Citrus Sinensis ID: 046787

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
MSDYVPEEVVAQILFRLPAKSVSEFRCVCKSWCALINDPTFISNYTHFAIKNITSNSQVILRHYDRVNSQERFTLHHDGISFSPIKELDLPFENKPDSFNVIGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPRPVVQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQKLGIYGETWSFFLDTYVESLVLMQRINGVLKMPTPPFNATSSSKAHRGETSGV
ccccccHHHHHHHcccccHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHcccccccEEEEEEEccccccEEEEEcccccccccccccccccccccccEEEEEEEEcEEEEEEcccccccEEEEEEEcccccEEEccccccccccccEEEEEEccccccEEEEEEEEEcccccccccccccEEEEEEcccccEEEEcccccccEEEEcccccEEEcccEEEEEEcccccccccccccEEEEEEEEccccEEEEEccccccccccccccccccEEEEEEccEEEEEEEcccccccccccEEEEEEEccccccccEEEEEEEcccccccEEEEEEEccEEEEEEEcccEEEEEEccccEEEEEEEEcccccEEEEEEEEccccccccccEEEcccccccccccccccccccccc
ccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccEEEEEEEcccccEEEEEccccccccccccccccccccccccEEEEEEcccEEEEEEccHHccccccEEEEccccccEEEEccccccccEEEEEEEEEccccccEEEEEEEEccccccccccccccEEEEEEcccccEEEEEcccccccccccccccEEEEEEEEEEEEEcccccccccccccEEEEEEEcccccccccccccccccccccEccccEEEEEEEHcEEEEEEEcccccccccccEEEEEEEEcccccccEEEEEEEcccccccEEEEEEEcccEEEEEccccEEEEEEccccEEEEEEEEcccccEEEEEEcccEEEEcccccEEEcccccccccccccccccccccc
MSDYVPEEVVAQILFrlpaksvseFRCVCKSWcalindptfisnyTHFAIKNITSNSQVILRHYdrvnsqerftlhhdgisfspikeldlpfenkpdsfnVIGICYGLVCLLdyhqkglsksvivwnpsleSCVRIMFKFTAANfesvhgfgfdpksvdykVVRIVVRDhfiigvrdaprpVVQVFALKVgswrnvttgdtslcritvktpqayvngtlhwvgydteshhVAQGIQRRLVLLAFDLREEVFkelnvpdelktdeLAYGREQKLFIGALDQKLALMHYYTQwynspsydgcciwmmkeyglgeswtKQFKIDLRLGLgkmaglrrngEMLLVTRYNEELVSFNTVNRKMQKLGIYGETWSFFLDTYVESLVLMQRINgvlkmptppfnatssskahrgetsgv
MSDYVPEEVVAQIlfrlpaksvsEFRCVCKSWCALINDPTFISNYTHFAIKNITSNSQVILRHYDRVNSQERFTLHHDGISFSPIKELDLPFENKPDSFNVIGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKFTAANFESVhgfgfdpksvdYKVVRIVVRDHFiigvrdaprpVVQVFALkvgswrnvttgdtslcritvkTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFkelnvpdelktdelAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQKLGIYGETWSFFLDTYVESLVLMQRINGVLKMPtppfnatssskahrgetsgv
MSDYVPEEVVAQILFRLPAKSVSEFRCVCKSWCALINDPTFISNYTHFAIKNITSNSQVILRHYDRVNSQERFTLHHDGISFSPIKELDLPFENKPDSFNVIGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPRPVVQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQKLGIYGETWSFFLDTYVESLVLMQRINGVLKMPTPPFNATSSSKAHRGETSGV
******EEVVAQILFRLPAKSVSEFRCVCKSWCALINDPTFISNYTHFAIKNITSNSQVILRHYDRVNSQERFTLHHDGISFSPIKELDLPFENKPDSFNVIGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPRPVVQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQKLGIYGETWSFFLDTYVESLVLMQRINGVLK**********************
MSDYVPEEVVAQILFRLPAKSVSEFRCVCKSWCALINDPTFISNYTHFAIKNITSNSQVILRHYDRVNSQERFTLHHDGISFSPIKELDLPFENKPDSFNVIGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPRPVVQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQKLGIYGETWSFFLDTYVESLVLMQRINGV************************
MSDYVPEEVVAQILFRLPAKSVSEFRCVCKSWCALINDPTFISNYTHFAIKNITSNSQVILRHYDRVNSQERFTLHHDGISFSPIKELDLPFENKPDSFNVIGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPRPVVQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQKLGIYGETWSFFLDTYVESLVLMQRINGVLKMPTPPF****************
**DYVPEEVVAQILFRLPAKSVSEFRCVCKSWCALINDPTFISNYTHFAIKNITSNSQVILRHYDRVNSQERFTLHHDGISFSPIKELDLPFENKPDSFNVIGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPRPVVQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQKLGIYGETWSFFLDTYVESLVLMQRINGVLKMPTPPF****************
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MSDYVPEEVVAQILFRLPAKSVSEFRCVCKSWCALINDPTFISNYTHFAIKNITSNSQVILRHYDRVNSQERFTLHHDGISFSPIKELDLPFENKPDSFNVIGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPRPVVQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQKLGIYGETWSFFLDTYVESLVLMQRINGVLKMPTPPFNATSSSKAHRGETSGV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query412 2.2.26 [Sep-21-2011]
Q8GXC7427 F-box/kelch-repeat protei yes no 0.808 0.779 0.274 1e-28
Q9SU30413 F-box protein CPR30 OS=Ar no no 0.810 0.808 0.276 3e-20
Q9LIR8364 F-box/kelch-repeat protei no no 0.665 0.752 0.254 6e-18
Q9SFC7417 F-box protein At3g07870 O no no 0.716 0.707 0.262 1e-14
Q9LU24360 Putative F-box protein At no no 0.567 0.65 0.258 1e-14
Q9FGY4359 F-box protein At5g49610 O no no 0.730 0.838 0.247 6e-13
Q9FZF8389 Putative F-box protein At no no 0.733 0.776 0.25 4e-12
Q9CAE7370 Putative F-box protein At no no 0.538 0.6 0.245 7e-12
Q9SUY0402 F-box protein At4g22390 O no no 0.805 0.825 0.264 1e-11
Q9ZPS1334 Putative F-box protein At no no 0.623 0.769 0.248 5e-10
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function desciption
 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 187/426 (43%), Gaps = 93/426 (21%)

Query: 5   VPEEVVAQILFRLPAKSVSEFRCVCKSWCALINDPTFISNYTHFAIKNITSNSQVILRHY 64
           +P E++ +IL RLPAKS+  FRCV K +C L +DP F   +    ++N +  S   L   
Sbjct: 36  LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRS---LHRK 92

Query: 65  DRVNSQERFTLHH----DGISFSPIKELDLPFENKPDSFN-------------------- 100
             V+S   ++L      DGI      E + P ++ P  F+                    
Sbjct: 93  LIVSSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLK 152

Query: 101 ------------VIGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKFTAANFE-- 146
                       ++G   GLVC+          +V ++NP+     R+   F   + E  
Sbjct: 153 LNAKSYRRNWVEIVGSSNGLVCI-----SPGEGAVFLYNPTTGDSKRLPENFRPKSVEYE 207

Query: 147 ----SVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPRPVVQVFALKVGSWRNVTTGDTS 202
                 +GFGFD  + DYK+V++V     I+           V++LK  SWR +      
Sbjct: 208 RDNFQTYGFGFDGLTDDYKLVKLVATSEDILDA--------SVYSLKADSWRRI------ 253

Query: 203 LCRITVK------TPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNV 256
            C +  +      T   + NG +HWV   TES H       + V++AFD++ E F+E+ V
Sbjct: 254 -CNLNYEHNDGSYTSGVHFNGAIHWVF--TESRH------NQRVVVAFDIQTEEFREMPV 304

Query: 257 PDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTK 316
           PDE    E    R     +G+L+ +L +++     ++        IW+M EYG  +SW++
Sbjct: 305 PDEA---EDCSHRFSNFVVGSLNGRLCVVNSCYDVHDD-------IWVMSEYGEAKSWSR 354

Query: 317 QFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQKLGIYGETWS--FFLDT 374
             +I+L     K     +N E +L+   + +LV +N        LGI G   S  F  +T
Sbjct: 355 -IRINLLYRSMKPLCSTKNDEEVLL-ELDGDLVLYNFETNASSNLGICGVKLSDGFEANT 412

Query: 375 YVESLV 380
           YVESL+
Sbjct: 413 YVESLI 418

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function description
>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1 Back     alignment and function description
>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 Back     alignment and function description
>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 Back     alignment and function description
>sp|Q9FGY4|FB341_ARATH F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1 Back     alignment and function description
>sp|Q9FZF8|FB44_ARATH Putative F-box protein At1g47790 OS=Arabidopsis thaliana GN=At1g47790 PE=4 SV=1 Back     alignment and function description
>sp|Q9CAE7|FB138_ARATH Putative F-box protein At3g10430 OS=Arabidopsis thaliana GN=At3g10430 PE=4 SV=1 Back     alignment and function description
>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3 Back     alignment and function description
>sp|Q9ZPS1|FB94_ARATH Putative F-box protein At2g02030 OS=Arabidopsis thaliana GN=At2g02030 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
255573101379 conserved hypothetical protein [Ricinus 0.871 0.947 0.367 1e-62
449444949379 PREDICTED: F-box protein CPR30-like [Cuc 0.873 0.949 0.319 6e-47
255569742371 conserved hypothetical protein [Ricinus 0.868 0.964 0.316 5e-45
296090345423 unnamed protein product [Vitis vinifera] 0.859 0.836 0.321 5e-42
449444947391 PREDICTED: F-box protein CPR30-like [Cuc 0.871 0.918 0.309 7e-42
224055111363 f-box family protein [Populus trichocarp 0.832 0.944 0.319 2e-40
224114972381 predicted protein [Populus trichocarpa] 0.888 0.960 0.303 1e-39
147785389485 hypothetical protein VITISV_041940 [Viti 0.900 0.764 0.299 3e-36
297739282423 unnamed protein product [Vitis vinifera] 0.900 0.877 0.299 8e-36
255573103242 conserved hypothetical protein [Ricinus 0.538 0.917 0.393 5e-34
>gi|255573101|ref|XP_002527480.1| conserved hypothetical protein [Ricinus communis] gi|223533120|gb|EEF34878.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/397 (36%), Positives = 224/397 (56%), Gaps = 38/397 (9%)

Query: 1   MSDYVPEEVVAQILFRLPAKSVSEFRCVCKSWCALINDPTFISNYTHFAIKNITSNSQVI 60
           M D++P+EV+ +I  RLP K +   RC+CK+W +LI++  FIS ++ + I +  +N+ +I
Sbjct: 1   MLDHIPKEVLIKIFLRLPVKQLLRCRCICKTWYSLISNHNFISTHSRYTIDS-NNNNYLI 59

Query: 61  LRHYDRVNSQERFTLHHDGIS-FSPIKELDLPFENKPDSFNVIGICYGLVCLLDYHQKGL 119
           LRHY R N +ERF LH D    FS  +ELD P E+  D F ++G C G++CL D H   L
Sbjct: 60  LRHYSRSNKKERFALHFDDDDMFSEYQELDFPLESSWDYFEIVGSCNGIICLTDNHSHIL 119

Query: 120 SKSVIVWNPSLESCV-----RIMFKFTAANFESVHGFGFDPKSVDYKVVRIVV----RDH 170
            K +++WNPS+   V     RI +K +      V GFGFD ++ DYKV+RIV      D 
Sbjct: 120 -KRIVLWNPSIGLSVTLPLQRISYKVSNV----VLGFGFDSRTNDYKVIRIVYYSTNDDS 174

Query: 171 FIIGVRDAPRPVVQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHH 230
            ++       P V++F L  G+WR   +       ++  + Q  + G +HWVGY +    
Sbjct: 175 LMVP------PEVEIFELSRGTWRINNSASVPAYDVSKYSSQIVLEGAIHWVGYYSP--- 225

Query: 231 VAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQ 290
                 R L +  + + +E FKE  +PDE+    L     Q L +    Q L+++ Y  +
Sbjct: 226 ------RELTIAVYVVHDEEFKEFRMPDEISGTAL-----QHLSVMLCCQLLSIIQYKKR 274

Query: 291 WYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVS 350
             +   Y+ CCIW+M EYG+ +SWTK F + +  G+GK+ GLR N E+LLV     EL+S
Sbjct: 275 G-SRLCYESCCIWVMNEYGVHDSWTKLFNVVVTGGIGKVLGLRNNVEVLLVGG-QGELIS 332

Query: 351 FNTVNRKMQKLGIYGETWSFFLDTYVESLVLMQRING 387
           ++   ++ + LGI GE+ SF+   Y+ESLVL++   G
Sbjct: 333 YDPWYQRSKSLGISGESCSFYAGIYMESLVLLKGRKG 369

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449444949|ref|XP_004140236.1| PREDICTED: F-box protein CPR30-like [Cucumis sativus] gi|449531147|ref|XP_004172549.1| PREDICTED: F-box protein CPR30-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255569742|ref|XP_002525835.1| conserved hypothetical protein [Ricinus communis] gi|223534840|gb|EEF36529.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|296090345|emb|CBI40164.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449444947|ref|XP_004140235.1| PREDICTED: F-box protein CPR30-like [Cucumis sativus] gi|449511918|ref|XP_004164088.1| PREDICTED: F-box protein CPR30-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224055111|ref|XP_002298418.1| f-box family protein [Populus trichocarpa] gi|222845676|gb|EEE83223.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224114972|ref|XP_002316906.1| predicted protein [Populus trichocarpa] gi|222859971|gb|EEE97518.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147785389|emb|CAN68677.1| hypothetical protein VITISV_041940 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297739282|emb|CBI28933.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255573103|ref|XP_002527481.1| conserved hypothetical protein [Ricinus communis] gi|223533121|gb|EEF34879.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.606 0.585 0.274 1.3e-21
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.553 0.626 0.277 1.3e-19
TAIR|locus:2135615413 CPR1 "AT4G12560" [Arabidopsis 0.832 0.830 0.275 1.5e-18
TAIR|locus:2077452417 AT3G07870 "AT3G07870" [Arabido 0.716 0.707 0.28 2.7e-14
TAIR|locus:2094947360 AT3G16210 "AT3G16210" [Arabido 0.364 0.416 0.317 1.6e-11
TAIR|locus:2075790370 AT3G10430 "AT3G10430" [Arabido 0.485 0.540 0.257 7e-10
TAIR|locus:2041115334 AT2G02030 "AT2G02030" [Arabido 0.286 0.353 0.3 3.1e-09
TAIR|locus:2089408374 AT3G16590 "AT3G16590" [Arabido 0.497 0.548 0.275 5.8e-09
TAIR|locus:2088985386 AT3G17280 "AT3G17280" [Arabido 0.439 0.468 0.279 6.1e-09
TAIR|locus:2202425389 AT1G47790 "AT1G47790" [Arabido 0.478 0.506 0.288 1.1e-08
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 192 (72.6 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
 Identities = 78/284 (27%), Positives = 135/284 (47%)

Query:   101 VIGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDY 160
             ++G   GLVC+      G   +V ++NP+     R+   F   + E      F      +
Sbjct:   165 IVGSSNGLVCI----SPG-EGAVFLYNPTTGDSKRLPENFRPKSVEYERD-NFQTYGFGF 218

Query:   161 KVVRIVVRDHFIIGVRDAPRPVVQ--VFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGT 218
               +     D+ ++ +      ++   V++LK  SWR +   +      +  T   + NG 
Sbjct:   219 DGL---TDDYKLVKLVATSEDILDASVYSLKADSWRRICNLNYEHNDGSY-TSGVHFNGA 274

Query:   219 LHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGAL 278
             +HWV   TES H     QR  V++AFD++ E F+E+ VPDE   ++ ++ R     +G+L
Sbjct:   275 IHWVF--TESRHN----QR--VVVAFDIQTEEFREMPVPDE--AEDCSH-RFSNFVVGSL 323

Query:   279 DQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEM 338
             + +L +++     Y+   +D   IW+M EYG  +SW++  +I+L     K     +N E 
Sbjct:   324 NGRLCVVN---SCYDV--HDD--IWVMSEYGEAKSWSR-IRINLLYRSMKPLCSTKNDEE 375

Query:   339 LLVTRYNEELVSFNTVNRKMQKLGIYGETWS--FFLDTYVESLV 380
             +L+   + +LV +N        LGI G   S  F  +TYVESL+
Sbjct:   376 VLL-ELDGDLVLYNFETNASSNLGICGVKLSDGFEANTYVESLI 418
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094947 AT3G16210 "AT3G16210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075790 AT3G10430 "AT3G10430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041115 AT2G02030 "AT2G02030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089408 AT3G16590 "AT3G16590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088985 AT3G17280 "AT3G17280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202425 AT1G47790 "AT1G47790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 1e-20
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 4e-06
pfam0064648 pfam00646, F-box, F-box domain 1e-05
pfam1293747 pfam12937, F-box-like, F-box-like 2e-05
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 89.7 bits (223), Expect = 1e-20
 Identities = 52/219 (23%), Positives = 89/219 (40%), Gaps = 36/219 (16%)

Query: 105 CYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMF-KFTAANFESVH-GFGFDPKSVDYKV 162
           C GL+C          K ++VWNPS      +   K   +N ES     G+DP    YKV
Sbjct: 4   CDGLICFSY------GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKV 57

Query: 163 VRIVVRDHFIIGVRDAPRPVVQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWV 222
           +    R           +   QV+ L   SWR +   + S     +K+    +NG L+++
Sbjct: 58  LCFSDRSGNR------NQSEHQVYTLGSNSWRTI---ECSPPHHPLKSRGVCINGVLYYL 108

Query: 223 GYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGALDQKL 282
            Y  +             +++FD+  E FKE        +D + Y     L +     KL
Sbjct: 109 AYTLK-------TNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDY-----LSLINYKGKL 156

Query: 283 ALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKID 321
           A++       ++ ++D   +W++ + G  E W+K F + 
Sbjct: 157 AVLKQK---KDTNNFD---LWVLNDAGKQE-WSKLFTVP 188

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 412
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.7
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.61
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.33
PHA02713557 hypothetical protein; Provisional 99.21
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.11
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.0
PHA02713557 hypothetical protein; Provisional 98.94
PHA03098534 kelch-like protein; Provisional 98.93
PHA02790480 Kelch-like protein; Provisional 98.91
PLN02153341 epithiospecifier protein 98.88
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.78
PLN02193470 nitrile-specifier protein 98.78
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.67
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.64
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.63
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.57
PLN02193470 nitrile-specifier protein 98.5
PHA02790480 Kelch-like protein; Provisional 98.49
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.49
PLN02153341 epithiospecifier protein 98.45
PHA03098534 kelch-like protein; Provisional 98.39
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.22
KOG4693392 consensus Uncharacterized conserved protein, conta 98.14
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.1
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.09
KOG4693392 consensus Uncharacterized conserved protein, conta 97.94
KOG1230 521 consensus Protein containing repeated kelch motifs 97.87
KOG0281499 consensus Beta-TrCP (transducin repeats containing 97.67
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.04
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.92
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.82
KOG1230 521 consensus Protein containing repeated kelch motifs 96.52
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 95.57
PF1396450 Kelch_6: Kelch motif 95.52
KOG2997366 consensus F-box protein FBX9 [General function pre 95.52
smart00284255 OLF Olfactomedin-like domains. 95.29
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 95.06
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 94.89
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 94.75
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 93.93
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 92.97
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 91.59
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 90.93
COG3055381 Uncharacterized protein conserved in bacteria [Fun 90.61
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 90.59
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 90.57
KOG2055514 consensus WD40 repeat protein [General function pr 90.41
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 90.1
KOG0316307 consensus Conserved WD40 repeat-containing protein 89.13
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 88.69
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 88.41
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 88.2
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 88.08
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 87.19
PF1396450 Kelch_6: Kelch motif 86.83
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 86.66
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 86.51
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 83.4
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 83.07
KOG4341483 consensus F-box protein containing LRR [General fu 82.0
smart0061247 Kelch Kelch domain. 81.49
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=9.4e-34  Score=256.97  Aligned_cols=219  Identities=23%  Similarity=0.413  Sum_probs=158.6

Q ss_pred             EEeeccEEEEeeeccCCCceeEEEEcCcCcceeecCCCCcC--CCcceEEEEeeeCCCCCEEEEEEEEEecccccccCCC
Q 046787          102 IGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKFTA--ANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAP  179 (412)
Q Consensus       102 ~~s~~GLlll~~~~~~~~~~~~~V~NP~T~~~~~LP~p~~~--~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~  179 (412)
                      ++|||||||+...      ..++||||+||+++.||+|...  ......++||||+.+++||||++.....    .   .
T Consensus         1 ~~sCnGLlc~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~----~---~   67 (230)
T TIGR01640         1 VVPCDGLICFSYG------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG----N---R   67 (230)
T ss_pred             CcccceEEEEecC------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC----C---C
Confidence            4799999998754      6799999999999999985432  1122368999999999999999976422    0   1


Q ss_pred             CCe-EEEEECCCCCceecCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEE-EecCC
Q 046787          180 RPV-VQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFK-ELNVP  257 (412)
Q Consensus       180 ~~~-~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~-~i~~P  257 (412)
                      ... ++||++++++||.++.  .+... .....+|++||++||++......       ....|++||+.+|+|+ .+++|
T Consensus        68 ~~~~~~Vys~~~~~Wr~~~~--~~~~~-~~~~~~v~~~G~lyw~~~~~~~~-------~~~~IvsFDl~~E~f~~~i~~P  137 (230)
T TIGR01640        68 NQSEHQVYTLGSNSWRTIEC--SPPHH-PLKSRGVCINGVLYYLAYTLKTN-------PDYFIVSFDVSSERFKEFIPLP  137 (230)
T ss_pred             CCccEEEEEeCCCCcccccc--CCCCc-cccCCeEEECCEEEEEEEECCCC-------CcEEEEEEEcccceEeeeeecC
Confidence            234 9999999999999942  22211 12234899999999999764311       1137999999999999 59999


Q ss_pred             CCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccC--Cc---cccEEE
Q 046787          258 DELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRL--GL---GKMAGL  332 (412)
Q Consensus       258 ~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~--~~---~~p~~~  332 (412)
                      .........      ..|++++|+||++....      ...+++||+|++++. ..|+|.++|+.+.  .+   ..|+++
T Consensus       138 ~~~~~~~~~------~~L~~~~G~L~~v~~~~------~~~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~  204 (230)
T TIGR01640       138 CGNSDSVDY------LSLINYKGKLAVLKQKK------DTNNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGF  204 (230)
T ss_pred             ccccccccc------eEEEEECCEEEEEEecC------CCCcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEE
Confidence            754321122      67999999999998864      125699999998874 4599999998532  12   247888


Q ss_pred             EecCCEEEEEEc-CCe-EEEEECCCC
Q 046787          333 RRNGEMLLVTRY-NEE-LVSFNTVNR  356 (412)
Q Consensus       333 ~~~g~~ill~~~-~~~-l~~yd~~t~  356 (412)
                      ..+|++++.... .+. ++.||++++
T Consensus       205 ~~~g~I~~~~~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       205 TDKGEIVLCCEDENPFYIFYYNVGEN  230 (230)
T ss_pred             eeCCEEEEEeCCCCceEEEEEeccCC
Confidence            877655554432 134 999999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 1e-05
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 1e-05
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 3e-04
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 6  PEEVVAQILFRLPAKS-VSEFRCVCKSWCALINDPTFISNYTH 47
          PE ++ ++L  LPA   V   R VC  W  L++          
Sbjct: 55 PEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQ 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query412
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.26
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.25
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.17
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.15
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.15
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.14
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.05
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.04
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.02
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.0
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.99
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.97
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.97
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 98.96
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.88
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.85
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.77
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.72
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.7
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.57
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.17
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.09
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.9
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.68
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.37
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.59
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.25
3jrp_A379 Fusion protein of protein transport protein SEC13 95.38
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 94.81
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 94.23
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 94.14
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 93.92
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 93.76
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 93.69
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 93.41
3jro_A 753 Fusion protein of protein transport protein SEC13 93.41
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 92.98
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 92.86
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 92.71
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 92.49
3jrp_A379 Fusion protein of protein transport protein SEC13 92.39
4g56_B357 MGC81050 protein; protein arginine methyltransfera 92.14
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 92.02
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 91.43
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 91.39
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 91.19
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 91.15
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 91.02
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 90.86
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 90.76
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 90.26
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 90.15
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 89.59
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 89.27
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 89.27
4e54_B435 DNA damage-binding protein 2; beta barrel, double 88.99
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 88.93
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 88.78
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 87.99
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 87.48
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 87.22
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 86.39
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 86.11
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 86.03
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 85.85
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 85.57
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 85.3
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 85.06
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 84.11
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 83.53
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 83.41
3v65_B386 Low-density lipoprotein receptor-related protein; 83.3
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 83.14
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 83.0
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 82.83
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 82.33
3bws_A 433 Protein LP49; two-domain, immunoglobulin-like, 7-b 82.03
1ri6_A 343 Putative isomerase YBHE; 7-bladed propeller, enzym 81.95
3ow8_A321 WD repeat-containing protein 61; structural genomi 81.54
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
Probab=99.26  E-value=1.9e-09  Score=100.31  Aligned_cols=222  Identities=11%  Similarity=-0.036  Sum_probs=135.2

Q ss_pred             EEEeeccEEEEeeeccCCCceeEEEEcCcCcceeecCCCCcCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccCCCC
Q 046787          101 VIGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPR  180 (412)
Q Consensus       101 i~~s~~GLlll~~~~~~~~~~~~~V~NP~T~~~~~LP~p~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~  180 (412)
                      .....+|.|++...........+.++||.|++|..+|+.........++.++       =+++.+.-...      ....
T Consensus        50 ~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~-------~~iyv~GG~~~------~~~~  116 (306)
T 3ii7_A           50 ACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAE-------GKIYTSGGSEV------GNSA  116 (306)
T ss_dssp             EEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEET-------TEEEEECCBBT------TBSC
T ss_pred             EEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEEC-------CEEEEECCCCC------CCcE
Confidence            3445677776655422222467899999999999998733222223333221       14555532221      1112


Q ss_pred             Ce-EEEEECCCCCceecCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEec-CCC
Q 046787          181 PV-VQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELN-VPD  258 (412)
Q Consensus       181 ~~-~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~-~P~  258 (412)
                      .. +++|++.+++|+.+  +.+|..  ......+.++|.+|.+++......   .......+..||+.+++|+.++ +|.
T Consensus       117 ~~~~~~~d~~~~~W~~~--~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~---~~~~~~~~~~yd~~~~~W~~~~~~p~  189 (306)
T 3ii7_A          117 LYLFECYDTRTESWHTK--PSMLTQ--RCSHGMVEANGLIYVCGGSLGNNV---SGRVLNSCEVYDPATETWTELCPMIE  189 (306)
T ss_dssp             CCCEEEEETTTTEEEEE--CCCSSC--CBSCEEEEETTEEEEECCEESCTT---TCEECCCEEEEETTTTEEEEECCCSS
T ss_pred             eeeEEEEeCCCCceEeC--CCCcCC--cceeEEEEECCEEEEECCCCCCCC---cccccceEEEeCCCCCeEEECCCccc
Confidence            33 99999999999999  556642  244556788999999987543110   0001256999999999999984 443


Q ss_pred             CcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCE
Q 046787          259 ELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEM  338 (412)
Q Consensus       259 ~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~  338 (412)
                      ...    .      ..++..+|+|++++....     ....-++|.++-  ....|..+..++.+.. ..-..+. + +.
T Consensus       190 ~r~----~------~~~~~~~~~i~v~GG~~~-----~~~~~~~~~yd~--~~~~W~~~~~~p~~r~-~~~~~~~-~-~~  249 (306)
T 3ii7_A          190 ARK----N------HGLVFVKDKIFAVGGQNG-----LGGLDNVEYYDI--KLNEWKMVSPMPWKGV-TVKCAAV-G-SI  249 (306)
T ss_dssp             CCB----S------CEEEEETTEEEEECCEET-----TEEBCCEEEEET--TTTEEEECCCCSCCBS-CCEEEEE-T-TE
T ss_pred             hhh----c------ceEEEECCEEEEEeCCCC-----CCCCceEEEeeC--CCCcEEECCCCCCCcc-ceeEEEE-C-CE
Confidence            221    1      466778999999987651     111235777764  2467998754442221 1222222 3 45


Q ss_pred             EEEEEc------CCeEEEEECCCCcEEEEE
Q 046787          339 LLVTRY------NEELVSFNTVNRKMQKLG  362 (412)
Q Consensus       339 ill~~~------~~~l~~yd~~t~~~~~v~  362 (412)
                      |++...      ...+..||+++++|+.+.
T Consensus       250 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~  279 (306)
T 3ii7_A          250 VYVLAGFQGVGRLGHILEYNTETDKWVANS  279 (306)
T ss_dssp             EEEEECBCSSSBCCEEEEEETTTTEEEEEE
T ss_pred             EEEEeCcCCCeeeeeEEEEcCCCCeEEeCC
Confidence            555432      256999999999999985
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 412
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 1e-08
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 1e-04
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 3e-04
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 0.003
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (115), Expect = 1e-08
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 3  DYVPEEVVAQILFRLPAKSVSEFRCVCKSWCALINDPTF 41
          D +P+E++  I   L    + +   VCK W  L +D + 
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query412
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.19
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.5
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.42
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.41
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.38
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.08
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.95
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.72
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 93.54
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 92.91
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 86.0
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 84.55
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 82.86
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 82.24
d2p4oa1 302 Hypothetical protein All0351 homologue {Nostoc pun 80.75
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.4e-12  Score=79.77  Aligned_cols=39  Identities=28%  Similarity=0.529  Sum_probs=37.0

Q ss_pred             CCCcHHHHHHHHccCCcccceeeeecchhhhhhhcCccc
Q 046787            3 DYVPEEVVAQILFRLPAKSVSEFRCVCKSWCALINDPTF   41 (412)
Q Consensus         3 ~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~p~F   41 (412)
                      +.||+|++.+||++||+++++|+++|||+|+.+++++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            579999999999999999999999999999999998875
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure