Citrus Sinensis ID: 046831

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MEMKLISSCGIALMVLLAMLSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGCLRGSPGSAQDSSANFVRIECDIILLATKEYILASKTLIAVVF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccHHHHcccccccccccHHHHHHHHccccccHHHcccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcHHHHHcccccccccHHcHHHHHHHHcccHHHHHHHccccccccccccccHHHHHHcHHHcccccccccccccccccccccccccEEEcccHHEHcHHHHHHHcHHEEEEEc
Coil and Loop (DISEMBL)
MEMKLISSCGIALMVLLAMLSVegtwaqstyclnrlapclrylngsrdvpdsccdplksvikdnpeclcsmisnkgsrraeeAGINVAAaqelpgkcgqrvnplgclrgspgsaqdssanfVRIECDIILLATKEYILASKTLIAVVF
Flexible Loop (DISEMBL)
MEMKLISSCGIALMVLLAMLSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLksvikdnpecLCSMISNKGSRRAEEAGINVAaaqelpgkcgQRVNPLGCLRGSPgsaqdssanfVRIECDIILLATKEYILASKTLIAVVF
Low Complexity Region (SEG)
MEMKLISSCGIALMVLLAMLSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGCLRGSPGSAQDSSANFVRIECDIILLATKEYILASKTLIAVVF
Disordered region (IsUnstruct)
****LISSCGIALMVLLAMLSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMI************************C***VNPLGC************ANFVRIECDIILLATKEYILASKTLIAVV*
Disordered Region (DISOPRED)
******S*CGIALMVLLAMLSVE*****STYCLNRLAPCLRYLN*SRDVPD*CCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNP**********************************LASKTLIAVVF
Disordered Region (DISEMBL)
MEMKLISSCGIALMVLLAMLSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGCLRGSPGSAQDSSANFVRIECDIILLATKEYILASKTLIAVVF
Disordered Region (DISPRO)
*EMKLISSCGIALMVLLAMLSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGCL***********ANFVRIECDIILLATKEYILASKTLIAVVF
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEMKLISSCGIALMVLLAMLSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGCLRGSPGSAQDSSANFVRIECDIILLATKEYILASKTLIAVVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
Q9FFY3	151	Lipid transfer-like prote	yes	no	0.777	0.761	0.529	2e-28
Q9M5X6	115	Non-specific lipid-transf	N/A	no	0.587	0.756	0.340	0.0009

>sp|Q9FFY3|VAS_ARATH Lipid transfer-like protein VAS OS=Arabidopsis thaliana GN=VAS PE=2 SV=1

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/117 (52%), Positives = 81/117 (69%), Gaps = 2/117 (1%)

Query: 1   MEMKLISSCGIALMVLLAMLSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKSV 60
           M MK  S     +++L+A  S      QS  CLN+LAPCL YLNG+++VP  CC+PLKSV
Sbjct: 3   MGMKFFSF--YVVLLLVAASSGMRINGQSVSCLNQLAPCLNYLNGTKEVPQVCCNPLKSV 60

Query: 61  IKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGCLRGSPGSAQDS 117
           I++NPECLC MISN+ S +AE AGI+V  AQ LP +CG+ VNP+ CL  S G + +S
Sbjct: 61  IRNNPECLCRMISNRWSSQAERAGIDVNDAQMLPARCGEHVNPIACLTRSRGGSTNS 117

Promotes the number of phloem (pro)cambial and pericycle cells.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M5X6|NLTP_PYRCO Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 11  IALMVLLAM-LSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKSV---IKDNP- 65
           +AL+V L M +SV      S    N LAPC+ Y+     VP +CC+ +K++    K  P 
Sbjct: 9   LALVVALCMAVSVAHAITCSQVSAN-LAPCINYVRSGGAVPPACCNGIKTINGLAKTTPD 67

Query: 66  -ECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRV 101
            +  C+ + N        +G+N   A+ LPGKCG  V
Sbjct: 68  RQAACNCLKN---LAGSVSGVNPGNAESLPGKCGVNV 101

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Pyrus communis (taxid: 23211)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
296082244	150	unnamed protein product [Vitis vinifera]	0.790	0.78	0.641	2e-36
356559508	142	PREDICTED: lipid transfer-like protein V	0.925	0.964	0.514	1e-32
255543483	148	lipid binding protein, putative [Ricinus	0.722	0.722	0.588	1e-32
224121908	142	predicted protein [Populus trichocarpa]	0.702	0.732	0.560	2e-28
15240748	151	Lipid transfer-like protein VAS [Arabido	0.777	0.761	0.529	1e-26
297811503	150	hypothetical protein ARALYDRAFT_488216 [	0.581	0.573	0.639	3e-26
449501313	147	PREDICTED: lipid transfer-like protein V	0.918	0.925	0.468	1e-25
449455760	147	PREDICTED: lipid transfer-like protein V	0.918	0.925	0.468	1e-25
294464420	173	unknown [Picea sitchensis]	0.695	0.595	0.364	3e-09
223029869	147	protease inhibitor/seed storage/lipid tr	0.608	0.612	0.357	1e-08

>gi|296082244|emb|CBI21249.3| unnamed protein product [Vitis vinifera]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 94/120 (78%), Gaps = 3/120 (2%)

Query: 1   MEMKLISSCGIALMVLLAMLSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKSV 60
           ME+K  + CGIA++VL+ ++  EG WAQ + CLN LAPCL YLNG+RD PDSCCDPLKSV
Sbjct: 1   MELKFWACCGIAVIVLVTLVP-EG-WAQDSSCLNELAPCLNYLNGTRDPPDSCCDPLKSV 58

Query: 61  IKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGCLRGSPGSAQDSSAN 120
           IK  PECLCSMIS KG+ +A +AGINV  AQ+LPG+CGQ VNPL CL  SP +++DS  N
Sbjct: 59  IKSKPECLCSMISTKGTSQARQAGINVTEAQQLPGRCGQHVNPLSCL-SSPPNSKDSVPN 117

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559508|ref|XP_003548041.1| PREDICTED: lipid transfer-like protein VAS-like [Glycine max]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 101/142 (71%), Gaps = 5/142 (3%)

Query: 1   MEMKLISSCGIALMVLLAMLSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKSV 60
           ME  L + C IA +VLL  +   G+ AQ + CLN+L+PCL YLNG+ D PDSCC+PLKSV
Sbjct: 1   METILRALCWIAFLVLLTCIP-RGS-AQDSSCLNKLSPCLNYLNGTEDPPDSCCEPLKSV 58

Query: 61  IKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGCLRGSPG---SAQDS 117
           I+ + ECLCS++SN+G+R+AE+AGIN+  AQ+LPG+CGQ VNPL CL  SPG   S ++S
Sbjct: 59  IESDAECLCSLVSNRGTRQAEQAGININEAQQLPGRCGQHVNPLSCLTNSPGPTNSDRNS 118

Query: 118 SANFVRIECDIILLATKEYILA 139
           +   V +   I+++     I+A
Sbjct: 119 ATKLVHVSSGIVMMILFFSIIA 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543483|ref|XP_002512804.1| lipid binding protein, putative [Ricinus communis] gi|223547815|gb|EEF49307.1| lipid binding protein, putative [Ricinus communis]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 84/107 (78%)

Query: 7   SSCGIALMVLLAMLSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPE 66
           S CGI  +VL+  + V+    Q T C+N+L PCL YLNG++DVPD+CC+PL++VIK +PE
Sbjct: 7   SRCGIVALVLVVAILVQKGNGQDTSCINQLVPCLNYLNGTKDVPDTCCEPLENVIKSDPE 66

Query: 67  CLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGCLRGSPGS 113
           CLCSMISN+GS +AE+AGINV  AQ+LPG+CG  VNP+ C+ GSP +
Sbjct: 67  CLCSMISNEGSDQAEQAGINVTEAQQLPGRCGLHVNPISCITGSPNT 113

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121908|ref|XP_002330683.1| predicted protein [Populus trichocarpa] gi|222872287|gb|EEF09418.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 79/107 (73%), Gaps = 3/107 (2%)

Query: 3   MKLISSCGIALMVLLAMLSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKSVIK 62
           M  + SC + +  L+  + ++  +AQ T CLN+L PCL YLNG++DVPD+CCDPLK+VIK
Sbjct: 1   MDKLLSCFLGISSLMLFVLLQDGYAQDTSCLNQLVPCLSYLNGTKDVPDTCCDPLKTVIK 60

Query: 63  DNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGCLRG 109
            NP+CLC++ SN+GS    +AGINV  AQELPG+CG  VNPL CL G
Sbjct: 61  SNPKCLCNLASNQGSN---QAGINVTEAQELPGRCGLHVNPLSCLTG 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240748|ref|NP_196894.1| Lipid transfer-like protein VAS [Arabidopsis thaliana] gi|75170324|sp|Q9FFY3.1|VAS_ARATH RecName: Full=Lipid transfer-like protein VAS; Flags: Precursor gi|18390051|gb|AAL68835.1|AF463514_1 lipid transfer protein-like VAS [Arabidopsis thaliana] gi|10177656|dbj|BAB11118.1| unnamed protein product [Arabidopsis thaliana] gi|50253552|gb|AAT71978.1| At5g13900 [Arabidopsis thaliana] gi|51968626|dbj|BAD43005.1| predicted GPI-anchored protein [Arabidopsis thaliana] gi|332004574|gb|AED91957.1| Lipid transfer-like protein VAS [Arabidopsis thaliana]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/117 (52%), Positives = 81/117 (69%), Gaps = 2/117 (1%)

Query: 1   MEMKLISSCGIALMVLLAMLSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKSV 60
           M MK  S     +++L+A  S      QS  CLN+LAPCL YLNG+++VP  CC+PLKSV
Sbjct: 3   MGMKFFSF--YVVLLLVAASSGMRINGQSVSCLNQLAPCLNYLNGTKEVPQVCCNPLKSV 60

Query: 61  IKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGCLRGSPGSAQDS 117
           I++NPECLC MISN+ S +AE AGI+V  AQ LP +CG+ VNP+ CL  S G + +S
Sbjct: 61  IRNNPECLCRMISNRWSSQAERAGIDVNDAQMLPARCGEHVNPIACLTRSRGGSTNS 117

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811503|ref|XP_002873635.1| hypothetical protein ARALYDRAFT_488216 [Arabidopsis lyrata subsp. lyrata] gi|297319472|gb|EFH49894.1| hypothetical protein ARALYDRAFT_488216 [Arabidopsis lyrata subsp. lyrata]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 68/86 (79%)

Query: 27  AQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGIN 86
            QS  CLN+LAPCL YLNG+++VP  CC+PLKSVI++NPECLC MISN+GS +AE AGI+
Sbjct: 29  GQSVSCLNQLAPCLNYLNGTKEVPQVCCNPLKSVIRNNPECLCRMISNRGSSQAERAGID 88

Query: 87  VAAAQELPGKCGQRVNPLGCLRGSPG 112
           V  AQ LP +CG+ VNP+ CL  S G
Sbjct: 89  VNDAQMLPARCGEHVNPIACLTRSRG 114

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501313|ref|XP_004161335.1| PREDICTED: lipid transfer-like protein VAS-like [Cucumis sativus]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/143 (46%), Positives = 89/143 (62%), Gaps = 7/143 (4%)

Query: 3   MKLISSCGIALMVLLAMLSVEGTWAQS--TYCLNRLAPCLRYLNGSRDVPDSCCDPLKSV 60
           MK I +  + +MVLL      GT AQS  T C+N L PCL Y+NG+RD P+SCC+PL+S+
Sbjct: 8   MKKIVAAAV-VMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPLRSI 66

Query: 61  IKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGCLRGSPGSAQDSSAN 120
           I  NPECLC +IS +GS RAE AGI++  AQ LP +CG+ VNPL CL  +  S   S   
Sbjct: 67  INSNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSGSPS--- 123

Query: 121 FVRIECDIILLATKEYILASKTL 143
            + +   +I LA    ++ S  L
Sbjct: 124 -MSLALQVITLAISTKLIMSSIL 145

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455760|ref|XP_004145619.1| PREDICTED: lipid transfer-like protein VAS-like [Cucumis sativus]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/143 (46%), Positives = 89/143 (62%), Gaps = 7/143 (4%)

Query: 3   MKLISSCGIALMVLLAMLSVEGTWAQS--TYCLNRLAPCLRYLNGSRDVPDSCCDPLKSV 60
           MK I +  + +MVLL      GT AQS  T C+N L PCL Y+NG+RD P+SCC+PL+S+
Sbjct: 8   MKKIVAAAV-VMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPLRSI 66

Query: 61  IKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGCLRGSPGSAQDSSAN 120
           I  NPECLC +IS +GS RAE AGI++  AQ LP +CG+ VNPL CL  +  S   S   
Sbjct: 67  INSNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSGSPS--- 123

Query: 121 FVRIECDIILLATKEYILASKTL 143
            + +   +I LA    ++ S  L
Sbjct: 124 -MSLALQVITLAISTKLIMSSIL 145

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294464420|gb|ADE77722.1| unknown [Picea sitchensis]

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 4/107 (3%)

Query: 1   MEMKLISSCGIALMVLLAMLS-VEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKS 59
           M+ + +   GI  MVL++ML  V    + ST CL+ L+ C  YLN +     SCC  L S
Sbjct: 1   MDSRRLKRSGIVCMVLMSMLMLVVCEDSDSTACLSSLSSCAPYLNATTKPDSSCCSALIS 60

Query: 60  VIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGC 106
           VI  + +CLC+++    S   +E G+NV  A ++P +CG+ V+   C
Sbjct: 61  VIDKDSQCLCNLL---NSNTVKELGVNVTQAMKMPAECGKNVSATQC 104

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223029869|gb|ACM78616.1| protease inhibitor/seed storage/lipid transfer protein family protein [Tamarix hispida]

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 5/95 (5%)

Query: 11  IALMVLLAMLSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPECLCS 70
           +A+ +  A+++       ST C + L PC  +LN +   P SCCDPLK  I+   +CLC+
Sbjct: 8   VAMALAGALIATTSEAQASTDCASSLTPCATFLNATTKPPSSCCDPLKKAIETEKDCLCN 67

Query: 71  MISNKGSRRAEEAGINVAAAQELPGKC---GQRVN 102
           + +  G  ++   GINV  A +LP KC   G  +N
Sbjct: 68  IFNTPGLLKS--FGINVTEATQLPRKCEIPGTSIN 100

Source: Tamarix hispida

Species: Tamarix hispida

Genus: Tamarix

Family: Tamaricaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
TAIR|locus:2159053	151	AT5G13900 [Arabidopsis thalian	0.770	0.754	0.525	3.1e-28
TAIR|locus:2077001	170	AT3G22600 [Arabidopsis thalian	0.702	0.611	0.355	2.2e-11
TAIR|locus:2039366	183	AT2G48130 [Arabidopsis thalian	0.810	0.655	0.333	6.6e-10
TAIR|locus:505006466	156	AT4G14815 [Arabidopsis thalian	0.729	0.692	0.293	3.6e-09
TAIR|locus:2065634	115	AT2G37870 [Arabidopsis thalian	0.675	0.869	0.339	5.9e-09
TAIR|locus:2035052	147	AT1G73560 [Arabidopsis thalian	0.668	0.673	0.314	9.7e-09
TAIR|locus:1006230669	171	AT1G03103 "AT1G03103" [Arabido	0.506	0.438	0.4	1.2e-08
TAIR|locus:2031551	193	AT1G73890 [Arabidopsis thalian	0.729	0.559	0.313	8.7e-08
TAIR|locus:2014074	180	AT1G18280 [Arabidopsis thalian	0.601	0.494	0.282	1.8e-07
TAIR|locus:2026257	150	AT1G62790 "AT1G62790" [Arabido	0.655	0.646	0.277	3.8e-07

TAIR|locus:2159053 AT5G13900 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 62/118 (52%), Positives = 82/118 (69%)

Query:     1 MEMKLISSCGIALMVLLAM-LSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKS 59
             M MK  S   + L+V  +  + + G   QS  CLN+LAPCL YLNG+++VP  CC+PLKS
Sbjct:     3 MGMKFFSFYVVLLLVAASSGMRING---QSVSCLNQLAPCLNYLNGTKEVPQVCCNPLKS 59

Query:    60 VIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGCLRGSPGSAQDS 117
             VI++NPECLC MISN+ S +AE AGI+V  AQ LP +CG+ VNP+ CL  S G + +S
Sbjct:    60 VIRNNPECLCRMISNRWSSQAERAGIDVNDAQMLPARCGEHVNPIACLTRSRGGSTNS 117

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2077001 AT3G22600 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 42/118 (35%), Positives = 62/118 (52%)

Query:    11 IALMVLLAMLSVEGTWAQSTYCLNRL---APCLRYLNGSRDVPDS-CCDPLKSVIKDNPE 66
             + L V +A++S     AQS+ C N L   +PCL Y+ G+   P+  CC+ L  V++ +P+
Sbjct:     8 VFLTVFMAVMSSTMVSAQSS-CTNALISMSPCLNYITGNSTSPNQQCCNQLSRVVQSSPD 66

Query:    67 CLCSMISNKGSRRAEEAGINVAAAQEL--PGKCGQRVNPLG-CLRGSPG--SAQDSSA 119
             CLC +++  GS    + GINV   Q L  P  C  +  P+  C  G  G  S  DS A
Sbjct:    67 CLCQVLNGGGS----QLGINVNQTQALGLPRACNVQTPPVSRCNTGGGGGGSTSDSPA 120

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2039366 AT2G48130 [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 45/135 (33%), Positives = 66/135 (48%)

Query:     8 SCGIALMVLLAML-SVEGTWAQ-STYC---LNRLAPCLRYLNGSRDVPDS-CCDPLKSVI 61
             S  I  + L+A L SV  T AQ S+ C   L  L+PCL Y+ G+   P   CC  L SVI
Sbjct:     6 SYAITFVALVAALWSV--TKAQPSSSCVSTLTTLSPCLSYITGNSTTPSQPCCSRLDSVI 63

Query:    62 KDNPECLCSMISNKGSRRAEEAGINVAAAQ--ELPGKCGQRVNPLGCLRGSPG-SAQDSS 118
             K +P+C+CS +++         G+N+   Q  +LP  C  +  PL     + G +AQ  +
Sbjct:    64 KSSPQCICSAVNSP----IPNIGLNINRTQALQLPNACNIQTPPLTQCNAATGPTAQPPA 119

Query:   119 ANFVRIECDIILLAT 133
              +      D+ L  T
Sbjct:   120 PSPTEKTPDVTLTPT 134

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:505006466 AT4G14815 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 34/116 (29%), Positives = 54/116 (46%)

Query:     9 CGIALMVLLAMLSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDS-CCDPLKSVIKDNPEC 67
             C I  + L+ ++S+    +  T  L  +APCL ++  +  +P   CC+ L  V++ + EC
Sbjct:     6 CLILFIALMRVMSIVSAQSSCTNVLISMAPCLSFITQNTSLPSQQCCNQLAHVVRYSSEC 65

Query:    68 LCSMISNKGSRRAEEAGINVAAAQEL--PGKCGQRVNPLG-CLRGSPGSAQDSSAN 120
             LC ++   GS    + GINV   Q L  P  C     P   C  GS  ++     N
Sbjct:    66 LCQVLDGGGS----QLGINVNETQALALPKACHVETPPASRCHSGSSVNSHSEHGN 117

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2065634 AT2G37870 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 37/109 (33%), Positives = 56/109 (51%)

Query:     3 MKLISSCGIALM-VLLAMLSVEGTWAQSTYCLNR----LAPCLRYLNGSRD-VPDSCCDP 56
             MK      +ALM +L+++ SVE         +N+    L+PCL      R  VP  CC  
Sbjct:     1 MKCCKFVAVALMSLLISLASVEAAGECGRMPINQAAASLSPCLPATKNPRGKVPPVCCAK 60

Query:    57 LKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLG 105
             + ++I+ NP CLC+++    S  A++AGIN   A  +P +C  R  P G
Sbjct:    61 VGALIRTNPRCLCAVML---SPLAKKAGINPGIAIGVPKRCNIRNRPAG 106

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2035052 AT1G73560 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 33/105 (31%), Positives = 54/105 (51%)

Query:     1 MEMKLISSCGIALMVLLAM-LSVEGTWAQSTYCLNRLAPCLRYLNG-SRDVPDSCCDPLK 58
             ME+    +  +A++VL ++  + +G   Q T CL +L PC  Y++  +   P SCC P+K
Sbjct:     1 MEINKFLAVVVAVVVLYSVEATAQGGNPQLTACLQKLLPCQPYIHSLNPPPPPSCCGPMK 60

Query:    59 SVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNP 103
              +++ +  CLC   +N    +A    +    A  LP  CG  VNP
Sbjct:    61 EIVEKDAPCLCIAFNNPEVLKA--LNLTKENALLLPKACG--VNP 101

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:1006230669 AT1G03103 "AT1G03103" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query:    33 LNRLAPCLRYLNGSRDVPD-SCCDPLKSVIKDNPECLCSMI-SNKGSRRAEEAGINVAAA 90
             L  L+PCL YLNG    P  SCC    +V++ +PECLCS++ SN+ S    +   N   A
Sbjct:    29 LTSLSPCLYYLNGGSSSPSWSCCRQFSTVVQSSPECLCSVVNSNESSFYGFK--FNRTLA 86

Query:    91 QELPGKCG-QRVNPLGCLRG 109
               LP  C  Q  +P  C  G
Sbjct:    87 LNLPTACNVQTPSPSLCNTG 106

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2031551 AT1G73890 [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 36/115 (31%), Positives = 50/115 (43%)

Query:    11 IALMVLLAMLSVEGTWAQ-STYCLNRL---APCLRYLNGSRDVP-DSCCDPLKSVIKDNP 65
             I L++ L+   +    AQ    C +RL   APC  ++ G   +P   CCD L  +     
Sbjct:     8 ITLLISLSAFFLRMVLAQVPATCASRLLSLAPCGPFVQGFAQLPAQPCCDSLNQIYSQEA 67

Query:    66 ECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGCLRGSPGSA-QDSSA 119
              CLC  ++N  S  +    IN   A +LP  C    N   C    PG A  DSS+
Sbjct:    68 TCLCLFLNNT-STLSPAFPINQTLALQLPPLCNIPANSSTCSSSFPGEAPSDSSS 121

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2014074 AT1G18280 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 26/92 (28%), Positives = 46/92 (50%)

Query:    27 AQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGIN 86
             A S  C+ +L PC  YL+ +   P +CC PL  ++  +  CLC++ +N    ++    + 
Sbjct:    36 AHSLPCIQKLMPCQPYLHLATPPPATCCMPLNEIVAKDATCLCAVFNNVDMLKS--LNLT 93

Query:    87 VAAAQELPGKCGQRVNPLGCLRGSPGSAQDSS 118
                A +LP  CG + +   C + S G+   S+
Sbjct:    94 KENALDLPKACGAKADVSLC-KTSAGTNSSST 124

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2026257 AT1G62790 "AT1G62790" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 28/101 (27%), Positives = 48/101 (47%)

Query:    12 ALMVLLAMLSVEGTWAQSTYCLNRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPECLCSM 71
             A M ++A+L V    AQ T C+++L PC   LN +      CCD +K  ++    CLC++
Sbjct:    10 AAMTVMALLLVPTIEAQ-TECVSKLVPCFNDLNTTTTPVKECCDSIKEAVEKELTCLCTI 68

Query:    72 ISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGCL-RGSP 111
              ++ G     +  +    A  L  +C    +   C  +G+P
Sbjct:    69 YTSPGL--LAQFNVTTEKALGLSRRCNVTTDLSACTAKGAP 107

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FFY3	VAS_ARATH	No assigned EC number	0.5299	0.7770	0.7615	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	148
cd00010	63	cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibit	1e-12
pfam14368	95	pfam14368, LTP_2, Probable lipid transfer	2e-12
smart00499	79	smart00499, AAI, Plant lipid transfer protein / se	4e-05
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	6e-05

>gnl|CDD|237980 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

 Score = 58.6 bits (142), Expect = 1e-12
 Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 36 LAPCLRYLNGSRD-VPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELP 94
          LAPCL YL G     P  CC  LKSV+K +P+CLC+ ++  G+        N   A  LP
Sbjct: 1  LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLG--LKNATRALALP 58

Query: 95 GKCG 98
            CG
Sbjct: 59 AACG 62

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges. Length = 63

>gnl|CDD|222713 pfam14368, LTP_2, Probable lipid transfer

 Score = 58.7 bits (142), Expect = 2e-12
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 12  ALMVLLAMLSVEGTWAQSTYCLNRLAPCLR--YLNGSRDVPDSCCDPLKSVIKDNPECLC 69
             ++L +  +     A +  C + L PCL   Y+NG+     +CC  LK+ +K +  CLC
Sbjct: 2   LAVLLASAAAAPPAPASAASCADSLLPCLGYCYVNGTAAPSPACCAALKAAVKADVPCLC 61

Query: 70  SMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGC 106
            ++    S  A   GIN+  A  LP  CG    P  C
Sbjct: 62  DLV---TSPLAAGFGINLTRAVALPKACGLTSPPSKC 95

The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways. Length = 95

>gnl|CDD|214698 smart00499, AAI, Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

 Score = 39.7 bits (92), Expect = 4e-05
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 33  LNRLAPCLRYLNG---SRDVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAA 89
           L +LAPCL YL G          CC  L+ +   + +C C  +        E  G+N   
Sbjct: 5   LLQLAPCLSYLVGGSRGAPPSQQCCSQLRGLN--SAQCRCLALRAAVLGILEIPGLNAQN 62

Query: 90  AQELPGKCGQRVNPLGC 106
           A  LP  CG       C
Sbjct: 63  AASLPSACGVPPPYTDC 79

Length = 79

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 39.1 bits (91), Expect = 6e-05
 Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 33  LNRLAPCLRYLNGSRDVP-DSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQ 91
           L +LAPC  YL G   VP   CC  L+ +     +C C+ I           GIN  AA 
Sbjct: 5   LLKLAPCAGYLQGGCQVPSQQCCSQLRQL---QAQCRCTAIRAIVLGIE---GINPQAAA 58

Query: 92  ELPGKCGQRVNP 103
            LP  CG  V  
Sbjct: 59  SLPSMCGVNVPY 70

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.64
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.43
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.39
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.36
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.35
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	98.8
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	98.25
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	89.85
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	88.27

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.64  E-value=2.4e-17  Score=114.80  Aligned_cols=81  Identities=41%  Similarity=0.823  Sum_probs=51.8

Q ss_pred             ccccccccchhhchhcc---hhhhcCCCCCCccchhhhhhhcCCCCccccccccCcccccccccCCCHHHHhhccccCCC
Q 046831           23 EGTWAQSTYCLNRLAPC---LRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQ   99 (148)
Q Consensus        23 ~~~~~~a~~C~~~L~pC---l~yl~g~~~Pp~~CC~~lk~l~~~~~~CLC~~l~~~~~~~~~~~~in~~~a~~LP~~Cgv   99 (148)
                      ........+|..+|.+|   ..|++++.+|++.||+++|++.+.++.|+|+++++..   ...++||.+++..||++||+
T Consensus        13 ~~~~~~~~~c~~~l~~c~~~~~~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~---~~~~~in~~~a~~Lp~~Cg~   89 (96)
T PF14368_consen   13 APAAACCCSCANSLLPCCPCLCYVTGGPAPSAACCSALKSVVQADPPCLCQLLNSPG---APGFGINVTRALALPAACGV   89 (96)
T ss_dssp             -----BTTB-HCCCCHH--HHHHHCC-----HHHHHHHCC----HCCHHHCCCC-CC---HCHHCCTCHHHHHHHHHCTS
T ss_pred             ccCCCCcchhHHHHhccccchhccCCCCCCCHHHHHHHHHhccCCCCCHHHhcCccc---cccCCcCHHHHHHHHHHcCC
Confidence            34445557788888888   7888866789999999999998888999999888753   13468999999999999999


Q ss_pred             CCCCCCC
Q 046831          100 RVNPLGC  106 (148)
Q Consensus       100 ~~p~~~C  106 (148)
                      +.++..|
T Consensus        90 ~~~~~~C   96 (96)
T PF14368_consen   90 PVPPSKC   96 (96)
T ss_dssp             S-S----
T ss_pred             CCCCCCC
Confidence            9988555

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.43  E-value=5.6e-14  Score=91.58  Aligned_cols=61  Identities=46%  Similarity=1.005  Sum_probs=51.9

Q ss_pred             hhcchhhhcCCC-CCCccchhhhhhhcCCCCccccccccCcccccccccCC-CHHHHhhccccCCC
Q 046831           36 LAPCLRYLNGSR-DVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGI-NVAAAQELPGKCGQ   99 (148)
Q Consensus        36 L~pCl~yl~g~~-~Pp~~CC~~lk~l~~~~~~CLC~~l~~~~~~~~~~~~i-n~~~a~~LP~~Cgv   99 (148)
                      |.||++|++|+. +|++.||++++++++.++.|+|+++++...   +..++ |.+++..||++||+
T Consensus         1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~---~~~~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGA---SLLGLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCccc---cccCcccHHHHHhchHhcCC
Confidence            579999999874 788999999999998889999999887542   22345 79999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.39  E-value=2.2e-13  Score=92.07  Aligned_cols=65  Identities=31%  Similarity=0.607  Sum_probs=52.0

Q ss_pred             hchhcchhhhcCCC---CCCccchhhhhhhcCCCCccccccccCcccccccccCCCHHHHhhccccCCCCCCCCCC
Q 046831           34 NRLAPCLRYLNGSR---DVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGC  106 (148)
Q Consensus        34 ~~L~pCl~yl~g~~---~Pp~~CC~~lk~l~~~~~~CLC~~l~~~~~~~~~~~~in~~~a~~LP~~Cgv~~p~~~C  106 (148)
                      ..|.||++|+++++   .|+..||+++|+++   ..|+|.+++...     ..+||.++|.+||++||+++|+.+|
T Consensus         6 ~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~---~~C~C~~~~~~~-----~~~i~~~~a~~Lp~~Cgv~~p~~~C   73 (73)
T cd04660           6 DLLAECQPYVTGPNPPPPPSRECCAALRRAD---LPCLCRYKTSLV-----LQIIDPDKAVYLPAKCGLPLPPSSC   73 (73)
T ss_pred             HHHHHHHHHHcCCCCCCCCCHHHHHHHHcCC---cCCEeeccCCCc-----ccccCHHHHHHHHHHcCCCCCCCCC
Confidence            46899999999765   47788999999853   459999766431     2259999999999999999987545

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.36  E-value=3.2e-13  Score=90.24  Aligned_cols=63  Identities=29%  Similarity=0.646  Sum_probs=53.4

Q ss_pred             hh-hchhcchhhhcCCCCCCccchhhhhhhcCCCCccccccccCcccccccccCCCHHHHhhccccCCCCCC
Q 046831           32 CL-NRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVN  102 (148)
Q Consensus        32 C~-~~L~pCl~yl~g~~~Pp~~CC~~lk~l~~~~~~CLC~~l~~~~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (148)
                      |+ .+|.+|.+|++++..||..||+.+|+    +..|||.|++++..   +. .||.++|.+||++||+++|
T Consensus         1 c~~~~L~~C~~ai~~~~~Ps~~CC~~Lk~----~~~CLC~y~~~p~l---~~-~i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           1 CNPTQLSPCLPAILGGSPPSAACCAKLKE----QQSCLCQYAKNPSL---KQ-YVNSPNARKVLAACGVPYP   64 (66)
T ss_pred             CChhhcccCHHHHhCCCCCCHHHHHHHhc----CCCCeeeeecCccH---Hh-hcCcHHHHHHHHHcCCCCC
Confidence            44 57999999999877899999999998    34899999887642   23 3999999999999999986

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.35  E-value=5e-13  Score=93.10  Aligned_cols=69  Identities=33%  Similarity=0.667  Sum_probs=53.0

Q ss_pred             chh---hchhcchhhhcCCC-CCCccchhhhhhhcCC-----CCccccccccCccccccccc-CCCHHHHhhccccCCCC
Q 046831           31 YCL---NRLAPCLRYLNGSR-DVPDSCCDPLKSVIKD-----NPECLCSMISNKGSRRAEEA-GINVAAAQELPGKCGQR  100 (148)
Q Consensus        31 ~C~---~~L~pCl~yl~g~~-~Pp~~CC~~lk~l~~~-----~~~CLC~~l~~~~~~~~~~~-~in~~~a~~LP~~Cgv~  100 (148)
                      +|.   ..|.||++|++|+. .|++.||++++++++.     +..|+|..+++..    ..+ +||.+++.+||++||++
T Consensus         2 ~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~----~~~~~i~~~~a~~LP~~C~v~   77 (89)
T cd01960           2 SCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAA----AGISGLNPGRAAGLPGKCGVS   77 (89)
T ss_pred             CHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccc----cccCCCCHHHHHhChHhcccC
Confidence            466   46899999999875 7889999999999753     3345665555532    233 59999999999999999


Q ss_pred             CCC
Q 046831          101 VNP  103 (148)
Q Consensus       101 ~p~  103 (148)
                      .+.
T Consensus        78 ~~~   80 (89)
T cd01960          78 IPY   80 (89)
T ss_pred             CCC
Confidence            764

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=98.80  E-value=4.9e-09  Score=69.04  Aligned_cols=64  Identities=31%  Similarity=0.663  Sum_probs=50.2

Q ss_pred             chhcchhhhcCC--C-CCCccchhhhhhhcCCCCccccccccCccccccccc---CCCHHHHhhccccCCCCCCC
Q 046831           35 RLAPCLRYLNGS--R-DVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEA---GINVAAAQELPGKCGQRVNP  103 (148)
Q Consensus        35 ~L~pCl~yl~g~--~-~Pp~~CC~~lk~l~~~~~~CLC~~l~~~~~~~~~~~---~in~~~a~~LP~~Cgv~~p~  103 (148)
                      ++.+|.+|+++.  . .|+..||+++++++  +..|+|.+++....   ...   .++..++..||+.||+..+.
T Consensus         7 ~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~~~---~~~~~~~~~~~~a~~lp~~C~~~~~~   76 (79)
T smart00499        7 QLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAAVL---GILEIPGVNAQNAASLPSACGVPPPY   76 (79)
T ss_pred             hHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcccc---cccchhhhhHHHHHhhHHhcCCCCCC
Confidence            456999999876  3 67789999999985  67899997765422   111   25899999999999998774

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=98.25  E-value=2.1e-08  Score=69.18  Aligned_cols=66  Identities=33%  Similarity=0.704  Sum_probs=51.2

Q ss_pred             chhcchhhhcCCC-CCCccchhhhhhhcCCCCccccccccCccccc-------ccccCCCHHHHhhccccCCCCCCC
Q 046831           35 RLAPCLRYLNGSR-DVPDSCCDPLKSVIKDNPECLCSMISNKGSRR-------AEEAGINVAAAQELPGKCGQRVNP  103 (148)
Q Consensus        35 ~L~pCl~yl~g~~-~Pp~~CC~~lk~l~~~~~~CLC~~l~~~~~~~-------~~~~~in~~~a~~LP~~Cgv~~p~  103 (148)
                      .+.+|.+|++++. .|+..||++|+++   ++.|+|..++......       ....+++..+|..||+.||++.+.
T Consensus        14 ~l~~c~~~~~~~~~~~~~~CC~~L~~l---~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~   87 (90)
T PF00234_consen   14 RLSPCLPYLQGGCQQPSQQCCQQLRQL---DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPY   87 (90)
T ss_dssp             HHHGGHHHHTTSSSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSS
T ss_pred             cccccHHHHhcccccchHHHhHHHHHH---hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCC
Confidence            5899999999875 6788999999998   4799998776532100       001258899999999999999875

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=89.85  E-value=0.16  Score=35.53  Aligned_cols=70  Identities=23%  Similarity=0.443  Sum_probs=43.9

Q ss_pred             chhcchhhhc--C--CC-CCCccchhhhhhhcCCC-CccccccccCcccccccccCCCHH-HHhhccccCCCCCCCCC-C
Q 046831           35 RLAPCLRYLN--G--SR-DVPDSCCDPLKSVIKDN-PECLCSMISNKGSRRAEEAGINVA-AAQELPGKCGQRVNPLG-C  106 (148)
Q Consensus        35 ~L~pCl~yl~--g--~~-~Pp~~CC~~lk~l~~~~-~~CLC~~l~~~~~~~~~~~~in~~-~a~~LP~~Cgv~~p~~~-C  106 (148)
                      +|.-|.+.+.  +  .+ .+...||+-++.+.+.+ ..|||..++....   ...++|.+ ....|-..||-..|... |
T Consensus         8 kLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vl---g~i~~~ipv~l~~lln~CGk~~p~gf~C   84 (85)
T PF14547_consen    8 KLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVL---GLINVNIPVALNLLLNACGKTVPSGFTC   84 (85)
T ss_pred             hhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcc---cccccccccHHHHHHHHhCCcCcCCCcC
Confidence            5677888771  1  12 34578999999998754 4799987764311   00123333 34466788998887653 6


Q ss_pred             C
Q 046831          107 L  107 (148)
Q Consensus       107 ~  107 (148)
                      +
T Consensus        85 ~   85 (85)
T PF14547_consen   85 P   85 (85)
T ss_pred             C
Confidence            4

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=88.27  E-value=0.32  Score=34.02  Aligned_cols=64  Identities=27%  Similarity=0.526  Sum_probs=41.1

Q ss_pred             chhcchhhhcCC----CC-CCccchhhhhhhcCC-CCccccccccCcccccccccCCC--HHH-HhhccccCCCCCCCC
Q 046831           35 RLAPCLRYLNGS----RD-VPDSCCDPLKSVIKD-NPECLCSMISNKGSRRAEEAGIN--VAA-AQELPGKCGQRVNPL  104 (148)
Q Consensus        35 ~L~pCl~yl~g~----~~-Pp~~CC~~lk~l~~~-~~~CLC~~l~~~~~~~~~~~~in--~~~-a~~LP~~Cgv~~p~~  104 (148)
                      +|.-|..-+...    +. |...||+-++.+.+- ...|+|..++..      .+||+  ..- ..-+-..||-..|++
T Consensus        10 kLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan------~lgi~~~~pv~l~llln~CGk~~P~g   82 (85)
T cd01958          10 KLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKAN------ILGISINIPVALSLLLNSCGRNVPPG   82 (85)
T ss_pred             HhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeecc------ccCcccccChhHHHHHHHHcCcCCCC
Confidence            467777776321    23 447899999999875 457999877643      23443  332 334456798887765

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	148
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	5e-07
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	2e-06
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	3e-06
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	3e-05
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	7e-04
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	7e-04

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Length = 90

 Score = 44.1 bits (104), Expect = 5e-07
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 36 LAPCLRYLNGSRDVPDSCCDPLKSVI-----KDNPECLCSMISNKGSRRAEEAGINVAAA 90
          + PCL Y+ G       CCD +K++      + + +  C+ +            +N   A
Sbjct: 10 VRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGI---HNLNEDNA 66

Query: 91 QELPGKCG 98
          + +P KCG
Sbjct: 67 RSIPPKCG 74

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Length = 92

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 36 LAPCLRYLNGSRDVPDSCCDPLKSVI-----KDNPECLCSMISNKGSRRAEEAGINVAAA 90
          LAPC+ Y+ G   VP +CC+ +++V        + +  C+ +    +      G+N   A
Sbjct: 11 LAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASV---PGVNPNNA 67

Query: 91 QELPGKCG 98
            LPGKCG
Sbjct: 68 AALPGKCG 75

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 36 LAPCLRYLNGSRDVPDSCCDPLKSV-----IKDNPECLCSMISNKGSRRAEEAGINVAAA 90
          LA C+ +L     VP SCC  +K++        +   +CS +           GIN   A
Sbjct: 10 LAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGA---VRGINPNNA 66

Query: 91 QELPGKCG 98
          + LPGKCG
Sbjct: 67 EALPGKCG 74

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 36 LAPCLRYLNGSRDVP-DSCCDPLKSVI-----KDNPECLCSMISNKGSRRAEEAGINVAA 89
          +APC+ Y  G    P   CC  ++S+        +    C+ + N  +     +G+N   
Sbjct: 11 IAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAG---VSGLNAGN 67

Query: 90 AQELPGKCG 98
          A  +P KCG
Sbjct: 68 AASIPSKCG 76

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana} Length = 77

 Score = 35.4 bits (81), Expect = 7e-04
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 34  NRLAPCLRYLNGSRDVPDS--CCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQ 91
           + L  C   ++       S  CC  L+     +  CLC     K S      G++   A 
Sbjct: 10  DELNECKPAVSKENPTSPSQPCCTALQHA---DFACLCGY---KNSPWLGSFGVDPELAS 63

Query: 92  ELPGKCGQRVNPLGC 106
            LP +CG   N   C
Sbjct: 64  ALPKQCG-LANAPTC 77

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Length = 91

 Score = 36.0 bits (83), Expect = 7e-04
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 9/68 (13%)

Query: 36 LAPCLRYLNGSRDVPDSCCDPLKSVI-----KDNPECLCSMISNKGSRRAEEAGINVAAA 90
          LAPCL YL  +  +   CC  +K+++      ++ +  C+ + +     +   GIN+  A
Sbjct: 11 LAPCLAYLRNTGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS---GINLGKA 66

Query: 91 QELPGKCG 98
            LP  CG
Sbjct: 67 AGLPSTCG 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.53
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.51
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.5
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.5
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.48
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.44
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.43
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.43
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.41
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	93.49
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	89.83

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.53  E-value=4.5e-16  Score=109.26  Aligned_cols=71  Identities=28%  Similarity=0.682  Sum_probs=58.3

Q ss_pred             ccchh---hchhcchhhhcCCCCCCccchhhhhhhcCC-----CCccccccccCcccccccccCCCHHHHhhccccCCCC
Q 046831           29 STYCL---NRLAPCLRYLNGSRDVPDSCCDPLKSVIKD-----NPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQR  100 (148)
Q Consensus        29 a~~C~---~~L~pCl~yl~g~~~Pp~~CC~~lk~l~~~-----~~~CLC~~l~~~~~~~~~~~~in~~~a~~LP~~Cgv~  100 (148)
                      +++|+   ..|.||++|++|++.|++.||++++++++.     ++.|+|..+++...   ...+||.++|.+||++||++
T Consensus         1 AisC~~v~~~L~pCl~Yv~g~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~---~~~~in~~~a~~LP~~CgV~   77 (93)
T 2ljo_A            1 AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAG---SITKLNTNNAAALPGKCGVN   77 (93)
T ss_dssp             CCSSHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGG---GCTTCCHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHhHHHHHcCCCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhh---ccCCcCHHHHHhhhHhcCCC
Confidence            36788   579999999998878999999999999853     34688887776422   23479999999999999999


Q ss_pred             CC
Q 046831          101 VN  102 (148)
Q Consensus       101 ~p  102 (148)
                      +|
T Consensus        78 ~p   79 (93)
T 2ljo_A           78 IP   79 (93)
T ss_dssp             CS
T ss_pred             CC
Confidence            88

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.51  E-value=2.2e-15  Score=101.93  Aligned_cols=68  Identities=24%  Similarity=0.543  Sum_probs=56.0

Q ss_pred             cchh---hchhcchhhhcCC--CCCCccchhhhhhhcCCCCccccccccCcccccccccCCCHHHHhhccccCCCCCCC
Q 046831           30 TYCL---NRLAPCLRYLNGS--RDVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNP  103 (148)
Q Consensus        30 ~~C~---~~L~pCl~yl~g~--~~Pp~~CC~~lk~l~~~~~~CLC~~l~~~~~~~~~~~~in~~~a~~LP~~Cgv~~p~  103 (148)
                      .+|+   .+|.||++|++++  ..|+..||+++|+   .+..|+|.+++++.   ++.++||.++|..||++||+++|+
T Consensus         3 ~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~---~~~~ClC~~~~~~~---~~~~gin~~~A~~LP~~Cgv~~p~   75 (77)
T 2rkn_A            3 DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQH---ADFACLCGYKNSPW---LGSFGVDPELASALPKQCGLANAP   75 (77)
T ss_dssp             CBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTT---CCHHHHHTTTTCHH---HHHHTBCHHHHHHHHHHTTCSCCC
T ss_pred             chHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHh---cCcCCcCcccCCcc---hhhcCcCHHHHHHHHHHcCCCCCC
Confidence            5787   5689999999974  4788899999998   35699999877542   234689999999999999999875

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.50  E-value=1.1e-15  Score=101.77  Aligned_cols=67  Identities=21%  Similarity=0.528  Sum_probs=56.5

Q ss_pred             chh-hchhcchhhhcCCCCCCccchhhhhhhcCCCCccccccccCcccccccccCCCHHHHhhccccCCCCCCCCCCC
Q 046831           31 YCL-NRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGCL  107 (148)
Q Consensus        31 ~C~-~~L~pCl~yl~g~~~Pp~~CC~~lk~l~~~~~~CLC~~l~~~~~~~~~~~~in~~~a~~LP~~Cgv~~p~~~C~  107 (148)
                      +|+ .+|.||++|+++++.||..||+++|+.    ..|+|.+++++..   . .+||.++|.+||++||+++|  .|+
T Consensus         2 ~C~~~~L~pC~~~v~~~~~Ps~~CC~~lk~~----~~ClC~~~k~~~~---~-~~in~~~A~~Lp~~Cgv~~P--~C~   69 (69)
T 1l6h_A            2 GCNAGQLTVCTGAIAGGARPTAACCSSLRAQ----QGCFCQFAKDPRY---G-RYVNSPNARKAVSSCGIALP--TCH   69 (69)
T ss_dssp             CSTTTTHHHHHHHHTTCCSTTHHHHHHHHHH----HHHHHHHTTCSSH---H-HHTTTTTGGGCCCCCSSCSC--CCC
T ss_pred             CCChhhcccCHHHHcCCCCCCHHHHHhhCCC----CCCCCccccCccc---c-cccCHHHHHHHHHHcCCCCC--CCC
Confidence            577 679999999998878999999999983    6899998887532   1 25999999999999999987  464

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.50  E-value=1.3e-15  Score=100.84  Aligned_cols=64  Identities=22%  Similarity=0.473  Sum_probs=54.5

Q ss_pred             chh-hchhcchhhhcCCCCCCccchhhhhhhcCCCCccccccccCcccccccccCCCHHHHhhccccCCCCCC
Q 046831           31 YCL-NRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVN  102 (148)
Q Consensus        31 ~C~-~~L~pCl~yl~g~~~Pp~~CC~~lk~l~~~~~~CLC~~l~~~~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (148)
                      +|+ .+|.||++|+++++.||+.||+++|+.    ..|+|.+++++..   . .+||.++|..||++||+++|
T Consensus         1 ~C~~~~L~pC~~~v~~~~~Ps~~CC~~lk~~----~~ClC~~~k~~~~---~-~~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            1 ACQASQLAVCASAILSGAKPSGECCGNLRAQ----QGCFCQYAKDPTY---G-QYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             CCCSSTTHHHHHHHTTCCCCCHHHHHHHHHH----SSHHHHGGGCSTT---H-HHHTCHHHHHHHHHHTSCCS
T ss_pred             CCChhhcccCHHHHcCCCCCCHHHHHhhCCC----CCCCCccccCccc---c-cccCHHHHHHHHHHcCCCCC
Confidence            366 679999999998878999999999983    7999998887532   1 25999999999999999987

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.48  E-value=1.6e-15  Score=106.00  Aligned_cols=68  Identities=34%  Similarity=0.762  Sum_probs=55.7

Q ss_pred             cchh---hchhcchhhhcCCCCCCccchhhhhhhc-------CCCCccccccccCccccccccc-CCCHHHHhhccccCC
Q 046831           30 TYCL---NRLAPCLRYLNGSRDVPDSCCDPLKSVI-------KDNPECLCSMISNKGSRRAEEA-GINVAAAQELPGKCG   98 (148)
Q Consensus        30 ~~C~---~~L~pCl~yl~g~~~Pp~~CC~~lk~l~-------~~~~~CLC~~l~~~~~~~~~~~-~in~~~a~~LP~~Cg   98 (148)
                      ++|+   .+|.||++|++|++.||+.||+++|+++       ++++.|+|.....      ..+ +||.++|.+||++||
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~------~~~~~in~~~A~~LP~~Cg   75 (92)
T 2alg_A            2 ITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLS------ASVPGVNPNNAAALPGKCG   75 (92)
T ss_dssp             CCHHHHHHHHGGGHHHHHHCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH------HHSTTCCHHHHHHHHHHTT
T ss_pred             CChHHHHHhccCcHHHHcCCCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcc------cccCccChHHHHHHHHHcC
Confidence            5788   4799999999987778889999999987       4457899973221      223 799999999999999


Q ss_pred             CCCCC
Q 046831           99 QRVNP  103 (148)
Q Consensus        99 v~~p~  103 (148)
                      +++|.
T Consensus        76 v~~p~   80 (92)
T 2alg_A           76 VSIPY   80 (92)
T ss_dssp             CCCSS
T ss_pred             CCCCC
Confidence            99874

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.44  E-value=6.2e-15  Score=102.65  Aligned_cols=67  Identities=27%  Similarity=0.630  Sum_probs=54.0

Q ss_pred             chh---hchhcchhhhcCCCCCCccchhhhhhhcC-------CCCccccccccCccccccccc-CCCHHHHhhccccCCC
Q 046831           31 YCL---NRLAPCLRYLNGSRDVPDSCCDPLKSVIK-------DNPECLCSMISNKGSRRAEEA-GINVAAAQELPGKCGQ   99 (148)
Q Consensus        31 ~C~---~~L~pCl~yl~g~~~Pp~~CC~~lk~l~~-------~~~~CLC~~l~~~~~~~~~~~-~in~~~a~~LP~~Cgv   99 (148)
                      +|+   .+|.||++|++|++.|++.||+++|++++       ++..|+|.  ++..    ..+ +||.++|.+||++||+
T Consensus         2 ~C~~v~~~L~pCl~y~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClCl--k~~~----~~~~~in~~~A~~LP~~C~v   75 (90)
T 1bwo_A            2 DCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCL--KGIA----RGIHNLNEDNARSIPPKCGV   75 (90)
T ss_dssp             CHHHHHHHHGGGHHHHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHH--HHHH----TTCTTCCHHHHHTHHHHHTC
T ss_pred             CHHHHHHhhcccHHHHcCCCCCCHHHhHHHHHHHhhccCCCCCCccCcCc--cCch----hccCCcCHHHHHHHHHHcCC
Confidence            577   47999999999876788899999999873       25689995  4422    223 7999999999999999


Q ss_pred             CCCC
Q 046831          100 RVNP  103 (148)
Q Consensus       100 ~~p~  103 (148)
                      ++|.
T Consensus        76 ~~p~   79 (90)
T 1bwo_A           76 NLPY   79 (90)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            9774

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.43  E-value=5.7e-15  Score=102.94  Aligned_cols=67  Identities=34%  Similarity=0.735  Sum_probs=54.1

Q ss_pred             chh---hchhcchhhhcCCCCCCccchhhhhhhcCC-------CCccccccccCccccccccc-CCCHHHHhhccccCCC
Q 046831           31 YCL---NRLAPCLRYLNGSRDVPDSCCDPLKSVIKD-------NPECLCSMISNKGSRRAEEA-GINVAAAQELPGKCGQ   99 (148)
Q Consensus        31 ~C~---~~L~pCl~yl~g~~~Pp~~CC~~lk~l~~~-------~~~CLC~~l~~~~~~~~~~~-~in~~~a~~LP~~Cgv   99 (148)
                      +|+   .+|.||++|++|++.|++.||+++|++++.       +..|+|.  ++..    +.+ +||.++|.+||++||+
T Consensus         2 ~C~~v~~~L~pCl~yv~~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~--k~~~----~~~~~in~~~A~~LP~~Cgv   75 (91)
T 1siy_A            2 TCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCL--KAAA----GAVRGINPNNAEALPGKCGV   75 (91)
T ss_dssp             CTTTTHHHHHHHHHHHTSCSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHH--HHHT----TCCSSCCHHHHHHHHHHHTC
T ss_pred             CHHHHHHhccCcHHHHhCCCCCcHHHHHHHHHHHhhhccCCCCCcCCccc--CCcc----cccCCcCHHHHHHHHHHcCC
Confidence            577   469999999998767888999999999742       4589996  4421    234 7999999999999999


Q ss_pred             CCCC
Q 046831          100 RVNP  103 (148)
Q Consensus       100 ~~p~  103 (148)
                      ++|.
T Consensus        76 ~~p~   79 (91)
T 1siy_A           76 NIPY   79 (91)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            9764

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.43  E-value=1.1e-14  Score=101.55  Aligned_cols=67  Identities=33%  Similarity=0.725  Sum_probs=54.0

Q ss_pred             cchh---hchhcchhhhcCCCCCCccchhhhhhhcCC-------CCccccccccCccccccccc-CCCHHHHhhccccCC
Q 046831           30 TYCL---NRLAPCLRYLNGSRDVPDSCCDPLKSVIKD-------NPECLCSMISNKGSRRAEEA-GINVAAAQELPGKCG   98 (148)
Q Consensus        30 ~~C~---~~L~pCl~yl~g~~~Pp~~CC~~lk~l~~~-------~~~CLC~~l~~~~~~~~~~~-~in~~~a~~LP~~Cg   98 (148)
                      ++|+   ..|.||++|++|++.|+ .||+++|++++.       ++.|+|.  ++.    +..+ +||.++|.+||++||
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~~P~-~CC~gv~~l~~~a~t~~dr~~~ClCl--k~~----~~~~~~in~~~A~~LP~~C~   74 (91)
T 1t12_A            2 ITCGQVTSNLAPCLAYLRNTGPLG-RCCGGVKALVNSARTTEDRQIACTCL--KSA----AGAISGINLGKAAGLPSTCG   74 (91)
T ss_dssp             CCHHHHHHHTHHHHHHHTTSSCCT-THHHHHHHHHHTTCSTHHHHHHHHHH--HHH----HHHCTTCCHHHHHHHHHHTT
T ss_pred             CChHHHHHhccCcHHHHcCCCChH-HHHHHHHHHHhhccCCCCCCccCCCc--ccc----ccccCCcChhHHHHHHHHcC
Confidence            5787   57999999999875576 999999999853       5789995  432    1234 799999999999999


Q ss_pred             CCCCC
Q 046831           99 QRVNP  103 (148)
Q Consensus        99 v~~p~  103 (148)
                      +++|.
T Consensus        75 v~~p~   79 (91)
T 1t12_A           75 VNIPY   79 (91)
T ss_dssp             CCCSS
T ss_pred             CCCCC
Confidence            99774

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.41  E-value=9.8e-15  Score=102.12  Aligned_cols=69  Identities=28%  Similarity=0.671  Sum_probs=53.8

Q ss_pred             cchh---hchhcchhhhcCCC-CCCccchhhhhhhcC-------CCCccccccccCcccccccccCCCHHHHhhccccCC
Q 046831           30 TYCL---NRLAPCLRYLNGSR-DVPDSCCDPLKSVIK-------DNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCG   98 (148)
Q Consensus        30 ~~C~---~~L~pCl~yl~g~~-~Pp~~CC~~lk~l~~-------~~~~CLC~~l~~~~~~~~~~~~in~~~a~~LP~~Cg   98 (148)
                      ++|+   .+|.||++|++|++ .|++.||+++|++++       ++..|+|.  +....   ...+||.++|.+||++||
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~--~~~~~---~~~~in~~~A~~LP~~C~   76 (93)
T 1afh_A            2 ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCL--KNAAA---GVSGLNAGNAASIPSKCG   76 (93)
T ss_dssp             CSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHH--HHHHT---TSTTCCHHHHHHHHHHHH
T ss_pred             CChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEee--ccccc---cccCcCHHHHHHHHHHcC
Confidence            5787   57999999999876 577799999999972       24689996  32111   112799999999999999


Q ss_pred             CCCCC
Q 046831           99 QRVNP  103 (148)
Q Consensus        99 v~~p~  103 (148)
                      +++|.
T Consensus        77 v~~p~   81 (93)
T 1afh_A           77 VSIPY   81 (93)
T ss_dssp             CCCSS
T ss_pred             CCCCC
Confidence            99774

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=93.49  E-value=0.0032  Score=53.79  Aligned_cols=58  Identities=22%  Similarity=0.579  Sum_probs=36.4

Q ss_pred             ccchhhhhhhcCCCCccccccccCccccccc------ccCCCHHHHhhccccCCCCCCCCCCCCCC
Q 046831           51 DSCCDPLKSVIKDNPECLCSMISNKGSRRAE------EAGINVAAAQELPGKCGQRVNPLGCLRGS  110 (148)
Q Consensus        51 ~~CC~~lk~l~~~~~~CLC~~l~~~~~~~~~------~~~in~~~a~~LP~~Cgv~~p~~~C~~~~  110 (148)
                      ..||+.|+.+.+ .+.|.|..++........      ..-.-..+|..||..||+. .|..|+-.+
T Consensus       429 ~~cc~~l~~~~~-~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~c~~~-~~~~c~~~~  492 (500)
T 3ob4_A          429 ERCCNELNEFEN-NQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLR-APQRCDLDV  492 (500)
T ss_dssp             HHHHHHHGGGTT-CHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTHHHHTTCC-CCSCCCCC-
T ss_pred             HHHHHHHHhCCc-ccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCchhcCCC-CCccCCccC
Confidence            579999998731 279999877653110000      0001134599999999997 456799544

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=89.83  E-value=0.059  Score=36.36  Aligned_cols=70  Identities=27%  Similarity=0.573  Sum_probs=48.6

Q ss_pred             cchhhchhcchhhhcCCCCCCccchhhhhhhcCC-CCccccccccCcccccccccC-CCHHHHhh-ccccCCCCCCCCC-
Q 046831           30 TYCLNRLAPCLRYLNGSRDVPDSCCDPLKSVIKD-NPECLCSMISNKGSRRAEEAG-INVAAAQE-LPGKCGQRVNPLG-  105 (148)
Q Consensus        30 ~~C~~~L~pCl~yl~g~~~Pp~~CC~~lk~l~~~-~~~CLC~~l~~~~~~~~~~~~-in~~~a~~-LP~~Cgv~~p~~~-  105 (148)
                      ..|- +|.-|.+-+.|.-.|...||+-++.+.+. ...|+|..++-        .| +|.+-... |-..||-..|+++ 
T Consensus         6 ~~CP-kLgvCanvL~g~~~~~~~CC~Ll~GL~dleAAvCLCtaik~--------Lgilnlpv~L~llln~Cgk~~P~gF~   76 (80)
T 1hyp_A            6 PSCP-DLSICLNILGGSLGTVDDCCALIGGLGDIEAIVCLCIQLRA--------LGILNLNRNLQLILNSCGRSYPSNAT   76 (80)
T ss_dssp             CCSC-CCGGGGGGGGTCCTTHHHHHHHHHTSCHHHHHHHHHHHHHH--------HTCSCHHHHHHHHHHHTTCSSCCCCC
T ss_pred             CCCC-chhHHHHHhCcCCCCCCccchhhhCcchhhhhhhhhhhccc--------cceeecChhHHHHHHHhCCcCcCCCC
Confidence            3455 78889887754323456899999999764 45799986651        23 46665555 5678999998875 


Q ss_pred             CCC
Q 046831          106 CLR  108 (148)
Q Consensus       106 C~~  108 (148)
                      |+.
T Consensus        77 C~~   79 (80)
T 1hyp_A           77 CPR   79 (80)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	148
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	7e-10
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	1e-07

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 50.6 bits (121), Expect = 7e-10
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 33 LNRLAPCLRYLNGSRDVPDSCCDPLKSVI-----KDNPECLCSMISNKGSRRAEEAGINV 87
           +++ PCL Y+ G       CC+ ++ +        + + +C+ +            +N+
Sbjct: 7  DSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARG---IHNLNL 63

Query: 88 AAAQELPGKCG 98
            A  +P KC 
Sbjct: 64 NNAASIPSKCN 74

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score = 44.5 bits (105), Expect = 1e-07
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 33 LNRLAPCLRYLNGSRDVPDS-CCDPLKSVI-----KDNPECLCSMISNKGSRRAEEAGIN 86
           + +APC+ Y  G    P + CC  ++S+        +    C+ + N  +     +G+N
Sbjct: 8  ASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAG---VSGLN 64

Query: 87 VAAAQELPGKCG 98
             A  +P KCG
Sbjct: 65 AGNAASIPSKCG 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	148
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.45
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.44
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	99.15
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	99.14
g1pnb.1	106	Napin BNIb {Rape (Brassica napus) [TaxId: 3708]}	90.67
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	87.62
d1psya_	125	2S albumin RicC3 {Castor bean (Ricinus communis) [	83.84

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.45  E-value=3.8e-15  Score=102.33  Aligned_cols=69  Identities=22%  Similarity=0.632  Sum_probs=56.7

Q ss_pred             chh---hchhcchhhhcCCCCCCccchhhhhhhcCC-----CCccccccccCcccccccccCCCHHHHhhccccCCCCCC
Q 046831           31 YCL---NRLAPCLRYLNGSRDVPDSCCDPLKSVIKD-----NPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVN  102 (148)
Q Consensus        31 ~C~---~~L~pCl~yl~g~~~Pp~~CC~~lk~l~~~-----~~~CLC~~l~~~~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (148)
                      +|.   ..|.||++|++|+++|++.||++++++++.     ++.|+|+.+++...   ...+||.+|+.+||++||+++|
T Consensus         2 ~C~~v~~~l~pCl~Yl~g~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~---~~~~in~~ra~~LP~~C~v~~p   78 (91)
T d1mida_           2 NCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIAR---GIHNLNLNNAASIPSKCNVNVP   78 (91)
T ss_dssp             CHHHHHHHHGGGHHHHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH---TCTTCCHHHHHHHHHHTTCCCC
T ss_pred             CHHHHHHHHHhhHHHHcCCCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcc---cCCCcCHHHHHhchHhcCCCCC
Confidence            577   579999999998888999999999999852     34688887776321   2347999999999999999987

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.44  E-value=2.4e-15  Score=103.70  Aligned_cols=71  Identities=25%  Similarity=0.657  Sum_probs=57.1

Q ss_pred             ccchh---hchhcchhhhcCCC-CCCccchhhhhhhcC-----CCCccccccccCcccccccccCCCHHHHhhccccCCC
Q 046831           29 STYCL---NRLAPCLRYLNGSR-DVPDSCCDPLKSVIK-----DNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQ   99 (148)
Q Consensus        29 a~~C~---~~L~pCl~yl~g~~-~Pp~~CC~~lk~l~~-----~~~~CLC~~l~~~~~~~~~~~~in~~~a~~LP~~Cgv   99 (148)
                      +++|.   ..|.||++|++|++ .|++.||++++++++     .++.|+|..+++...   ..++||.+|+.+||++||+
T Consensus         1 Ai~C~~v~~~l~pCl~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~---~~~~in~~ra~~LP~~C~v   77 (93)
T d1fk5a_           1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAA---GVSGLNAGNAASIPSKCGV   77 (93)
T ss_dssp             CCCHHHHHHHHGGGHHHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH---TCTTCCHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHhhhhHHHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhccc---ccCCcCHHHHHhhhHhcCC
Confidence            36788   57999999999876 788999999999985     244688877775321   2357999999999999999


Q ss_pred             CCC
Q 046831          100 RVN  102 (148)
Q Consensus       100 ~~p  102 (148)
                      +++
T Consensus        78 ~l~   80 (93)
T d1fk5a_          78 SIP   80 (93)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            886

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=99.15  E-value=1.7e-12  Score=84.29  Aligned_cols=64  Identities=22%  Similarity=0.509  Sum_probs=55.9

Q ss_pred             hh-hchhcchhhhcCCCCCCccchhhhhhhcCCCCccccccccCcccccccccCCCHHHHhhccccCCCCCCC
Q 046831           32 CL-NRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNP  103 (148)
Q Consensus        32 C~-~~L~pCl~yl~g~~~Pp~~CC~~lk~l~~~~~~CLC~~l~~~~~~~~~~~~in~~~a~~LP~~Cgv~~p~  103 (148)
                      |+ .+|.+|++.+++++.|+..||+.+|+    |..|||+|++|+..   +++ ||..+|..+-+.||+++|.
T Consensus         2 C~p~~L~~C~~Ai~~g~~PS~~CC~kLke----Q~~ClC~Y~kdP~~---~~y-v~spnarkv~~aCgvp~P~   66 (67)
T d1tuka1           2 CQASQLAVCASAILSGAKPSGECCGNLRA----QQGCFCQYAKDPTY---GQY-IRSPHARDTLTSCGLAVPH   66 (67)
T ss_dssp             CCGGGGGGGHHHHHHCCCCCHHHHHHHHH----HGGGHHHHTTCTTT---HHH-HTSHHHHHHHHHTTCCCCC
T ss_pred             CChhhccccHHHHhcCCCCcHHHHHHHHh----cCCccceecCCccH---HHH-cCCHHHHHHHHhcCCCCCC
Confidence            66 68999999999998999999999999    46899999999753   333 8999999999999999884

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.14  E-value=1.4e-12  Score=85.11  Aligned_cols=65  Identities=20%  Similarity=0.527  Sum_probs=56.8

Q ss_pred             chh-hchhcchhhhcCCCCCCccchhhhhhhcCCCCccccccccCcccccccccCCCHHHHhhccccCCCCCCC
Q 046831           31 YCL-NRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNP  103 (148)
Q Consensus        31 ~C~-~~L~pCl~yl~g~~~Pp~~CC~~lk~l~~~~~~CLC~~l~~~~~~~~~~~~in~~~a~~LP~~Cgv~~p~  103 (148)
                      .|+ .+|.+|++.++++..|+..||+.+|+    |..|||+|++|+..   +.+ ||..++..+-..|||++|.
T Consensus         2 ~C~p~~L~~C~~ai~~g~~PS~~CC~kLke----Q~~ClC~Y~k~P~~---~~y-v~spnarkv~~aCgvp~P~   67 (69)
T d1l6ha_           2 GCNAGQLTVCTGAIAGGARPTAACCSSLRA----QQGCFCQFAKDPRY---GRY-VNSPNARKAVSSCGIALPT   67 (69)
T ss_dssp             CSTTTTHHHHHHHHTTCCSTTHHHHHHHHH----HHHHHHHHTTCSSH---HHH-TTTTTGGGCCCCCSSCSCC
T ss_pred             CCChhhccccHHHHhCCCCCcHHHHHHHHh----cCCccceeccCccH---HHH-cCCHHHHHHHHhcCCCCCC
Confidence            577 78999999999999999999999999    45899999999743   333 8999999999999999884

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=87.62  E-value=0.037  Score=35.31  Aligned_cols=67  Identities=25%  Similarity=0.517  Sum_probs=45.6

Q ss_pred             chhcchhhhcCCCCCCccchhhhhhhcCC-CCccccccccCcccccccccCCCHHHHhh-ccccCCCCCCCCC-CCC
Q 046831           35 RLAPCLRYLNGSRDVPDSCCDPLKSVIKD-NPECLCSMISNKGSRRAEEAGINVAAAQE-LPGKCGQRVNPLG-CLR  108 (148)
Q Consensus        35 ~L~pCl~yl~g~~~Pp~~CC~~lk~l~~~-~~~CLC~~l~~~~~~~~~~~~in~~~a~~-LP~~Cgv~~p~~~-C~~  108 (148)
                      ++.-|.+-+.+...+...||.-++.+.+- ...|+|..++..      .. +|..-... |-..||-..|+++ |+.
T Consensus         5 Klg~C~nvLg~~~~~~~~CC~Ll~GL~dleAAvCLCtaika~------~l-lnvpv~l~llln~Cgk~~P~gF~CP~   74 (75)
T d1hypa_           5 DLSICLNILGGSLGTVDDCCALIGGLGDIEAIVCLCIQLRAL------GI-LNLNRNLQLILNSCGRSYPSNATCPR   74 (75)
T ss_dssp             CCGGGGGGGGTCCTTHHHHHHHHHTSCHHHHHHHHHHHHHHH------TC-SCHHHHHHHHHHHTTCSSCCCCCCSC
T ss_pred             chhhHHHHhcCccCCCCCcchHHhhHHHHHHHHHHHHHHHHh------hh-ccccchHHHHHHHcCCcCcCCCcCCC
Confidence            46678887765444457899999999764 457999877631      11 55554443 4567999988875 875

>d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus communis) [TaxId: 3988]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: 2S albumin RicC3
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=83.84  E-value=0.1  Score=36.03  Aligned_cols=71  Identities=31%  Similarity=0.627  Sum_probs=44.7

Q ss_pred             cccchh-----hchhcchhhhcCC----C--CC-----C-----------ccchhhhhhhcCCCCccccccccCccccc-
Q 046831           28 QSTYCL-----NRLAPCLRYLNGS----R--DV-----P-----------DSCCDPLKSVIKDNPECLCSMISNKGSRR-   79 (148)
Q Consensus        28 ~a~~C~-----~~L~pCl~yl~g~----~--~P-----p-----------~~CC~~lk~l~~~~~~CLC~~l~~~~~~~-   79 (148)
                      ....|.     ..|..|..||.-.    .  .+     .           ..||+.|+.+   ++.|.|..+....... 
T Consensus        14 ~~q~Crqe~q~q~L~sCq~Yl~qq~~~~~~~~~~~~~~~~~~~~~e~~~l~qCC~qL~q~---~~~CrC~~l~~~v~~~~   90 (125)
T d1psya_          14 SSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQI   90 (125)
T ss_dssp             SSSSHHHHHTTSTTSSHHHHHHSSSCCCCSCSCCCCSSCSSSCSSSCHHHHHHHHHHTTC---CSSHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHhhhHHHHHHHHHHHHhccCCCCcccccccccccccccHHHHHHHHHHHhC---CcCCcCHHHHHHHHHHH
Confidence            345676     3699999999621    1  11     0           2599999996   5899998765421100 


Q ss_pred             --ccccCCC----HHHHhhccccCCCCC
Q 046831           80 --AEEAGIN----VAAAQELPGKCGQRV  101 (148)
Q Consensus        80 --~~~~~in----~~~a~~LP~~Cgv~~  101 (148)
                        ...-+-.    +.+|..||..||+..
T Consensus        91 qq~~~~~~~~~~~~q~Ak~LPs~C~i~~  118 (125)
T d1psya_          91 QQGQLHGEESERVAQRAGEIVSSCGVRC  118 (125)
T ss_dssp             HHTTCCTTCSHHHHHHHHHHHHHHTCST
T ss_pred             HHHHHHHHHHHHHHHHHHhChhhcCCcc
Confidence              0001222    557889999999974