Citrus Sinensis ID: 046837

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------66
Protein Sequence
MALRNDLRMISASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSNIDGVPNGKREHMDALHDNKSLAAFSTPEPLSDIIHKICCEISCKGGGDALATTMALFKTLSSYSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLIGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRILSFRGLYTPSTTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRILGKHNRDNIKVLRALIYAEDLVDGETRTTVQIHVLKKKHVLLLISRPDDISQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKRLEEISSSITKTESSHIVIDATKMWFFWARLERMLYWKLQHGMGKTQETARAKGTAAIDCMEKFHEWQDDALRNGFIQALNNYLQKIHPGKHCNRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCCPE
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHEEEcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccEEEccEEEccEEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHccccccEEEEEEcccccEEcccHHHHHHHHccccccccHHHHHHHHHcccccHHHHcccccHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHcHHccccccHHHHHHHHHHcccccccccEEEEccccccccccEEcccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHccccccccccHHHHHccccccHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHcccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccEEEEEHHHcccEEEEEEEccccccHHHHHHHHHHHHHccccccEEEEEEEEcccccccHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHccccccEEEEEcccccEEcHHHHHHHHHHccccccccHHHHHHHHHHccccHHHEEccccHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccEEEEcccccccccEEEccccccccEEEEEEEcccc
Coil and Loop (DISEMBL)
malrndlrmisasDDSAKMMKQVLAnhapaghevdvrpILSIIEDIFRRatatpsnidgvpngkrehmdalhdnkslaafstpeplsdIIHKICCeisckgggDALATTMALFKTLSSYSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKqlpeiptgydalkPQFDELNNLIGAMLDLTNCIVEfkqlpsryisndgkamsmdqdhYHAAYWTFRSIVACNSRilsfrglytpsttheleLSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRILGKHNRDNIKVLRALIYAedlvdgetrTTVQIHVLKKKHVLLLisrpddisqEEILFLSNMYKDlkeskecrivwlpivdgsiDRQQALDKFKNLqkrmpwysiqdpamiqPAVIKYVKEEWKYSKKAIIVSvdpqgrilnqnAFHTLWIWGisafpftaeTEEALwkekpwtlellvgDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKRLEEISSSitktesshiVIDATKMWFFWARLERMLYWKLQHGMGKTQETARAKGTAAIDCMEKFHEWQDDALRNGFIQALNNYLqkihpgkhcnRLILAgvngaipgtvqcadcgrdmemffmyhccpe
Flexible Loop (DISEMBL)
MALRNDLRMISASDDSAKMMKQVLANhapaghevdvrPILSIIEDIFRRatatpsnidgvpnGKREHMDALHDNKSLAAFSTPEPLSDIIHKICCEISCKGGGDALATTMALFKTLSSYSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLIGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRILSFRGLYTPSTTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRilgkhnrdnIKVLRALIYAEDLVDGETRTTVQIHVLKKKHVLLLisrpddisqEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMpwysiqdpamiQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVAskaqinwgmayvgkknaKKRLEEISssitktesshiviDATKMWFFWARLERMLYWKLQHGMGKTQETARAKGTAAIDCMEKFHEWQDDALRNGFIQALNNYLQKIHPGKHCNRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCCPE
Low Complexity Region (SEG)
MALRNDLRMISASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSNIDGVPNGKREHMDALHDNKSLAAFSTPEPLSDIIHKICCEISCKGGGDALATTMALFKTLSSYSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLIGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRILSFRGLYtpstthelelstltYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRILGKHNRDNIKVLRALIYAEDLVDGETRTTVQIhvlkkkhvlllISRPDDISQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKRLeeisssitktessHIVIDATKMWFFWARLERMLYWKLQHGMGKTQETARAKGTAAIDCMEKFHEWQDDALRNGFIQALNNYLQKIHPGKHCNRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCCPE
Disordered region (IsUnstruct)
******************************GHEVDVRPILSIIEDIFRRAT*********************************PLSDIIHKICCEISCKGGGDALATTMALFKTLSSYSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLIGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRILSFRGLYTPSTTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRILGKHNRDNIKVLRALIYAEDLVDGETRTTVQIHVLKKKHVLLLISRPDDISQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKK*****************SSHIVIDATKMWFFWARLERMLYWKLQHGMGKTQETARAKGTAAIDCMEKFHEWQDDALRNGFIQALNNYLQKIHPGKHCNRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCC**
Disordered Region (DISOPRED)
*************DDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSN*****************NKSLAAFSTPEPLSDIIHKICCEISCKGGGDALATTMALFKTLSSYSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLIGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRILSFRGLYTPSTTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRILGKHNRDNIKVLRALIYAEDLVDGETRTTVQIHVLKKKHVLLLISRPDDISQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKN*KKRLEEISSSITKTESSHIVIDATKMWFFWARLERMLYWKLQHGMGKTQETARAKGTAAIDCMEKFHEWQDDALRNGFIQALNNYLQKIHPGKHCNRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCCPE
Disordered Region (DISEMBL)
MALRNDLRMISASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSNIDGVPNGKREHMDALHDNKSLAAFSTPEPLSDIIHKICCEISCKGGGDALATTMALFKTLSSYSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLIGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRILSFRGLYTPSTTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRILGKHNRDNIKVLRALIYAEDLVDGETRTTVQIHVLKKKHVLLLISRPDDISQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKRLEEISSSITKTESSHIVIDATKMWFFWARLERMLYWKLQH*************TAAIDCMEKFHEWQDDALRNGFIQALNNYLQKIHPGKHCNRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCCPE
Disordered Region (DISPRO)
************SDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSNIDGVPNGKREHMDALHDNKSLAAFSTPEPLSDIIHKICCEISCKGGGDALATTMALFKTLSSYSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLIGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRILSFRGLYTPSTTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRILGKHNRDNIKVLRALIYAEDLVDGETRTTVQIHVLKKKHVLLLISRPDDISQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKRLEEISSSITKTESSHIVIDATKMWFFWARLERMLYWKLQHGMGKTQETARAKGTAAIDCMEKFHEWQDDALRNGFIQALNNYLQKIHPGKHCNRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCCPE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALRNDLRMISASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSNIDGVPNGKREHMDALHDNKSLAAFSTPEPLSDIIHKICCEISCKGGGDALATTMALFKTLSSYSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLIGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRILSFRGLYTPSTTHELELSTLTYKVSNIHVxxxxxxxxxxxxxxxxxxxxxKEYNNLVRILGKHNRDNIKVLRALIYAEDLVDGETRTTVQIHVLKKKHVLLLISRPDDISQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKRLEEISSSITKTESSHIVIDATKMWFFWARLERMLYWKLQHGMGKTQETARAKGTAAIDCMEKFHEWQDDALRNGFIQALNNYLQKIHPGKHCNRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCCPE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	658
359806555	698	uncharacterized protein LOC100811452 [Gl	0.986	0.929	0.484	1e-176
359806206	705	uncharacterized protein LOC100789215 [Gl	0.986	0.920	0.482	1e-173
449501442	698	PREDICTED: uncharacterized LOC101204444	0.975	0.919	0.451	1e-169
297733661	708	unnamed protein product [Vitis vinifera]	0.984	0.915	0.469	1e-167
449440983	694	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.975	0.925	0.447	1e-167
255547988	701	conserved hypothetical protein [Ricinus	0.974	0.914	0.436	1e-161
147821880	693	hypothetical protein VITISV_041167 [Viti	0.965	0.916	0.456	1e-159
255572048	809	conserved hypothetical protein [Ricinus	0.983	0.799	0.438	1e-159
255572046	805	conserved hypothetical protein [Ricinus	0.987	0.807	0.429	1e-157
225424590	714	PREDICTED: uncharacterized protein LOC10	0.983	0.906	0.440	1e-154

>gi|359806555|ref|NP_001241263.1| uncharacterized protein LOC100811452 [Glycine max] gi|307101640|gb|ADN32785.1| sieve element occlusion c [Glycine max]

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 339/699 (48%), Positives = 452/699 (64%), Gaps = 50/699 (7%)

Query: 1   MALRNDLRMISASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSNIDGV 60
           M  R + RM S SDDSA M KQV A HAP G E+DV+PIL I+++I  R  A    ++G 
Sbjct: 9   MQQRRERRMFSTSDDSA-MTKQVEATHAPDGREIDVKPILQIVDEILVRFIA--RTVEG- 64

Query: 61  PNGKREHMDALHDNKSLAAFSTPEPLSDIIHKICCEISCK--GGGDALATTMALFKTLSS 118
            +  +   DAL    +LA F   + L+ II+KI CE+SCK  GGGDA ++TM L   +SS
Sbjct: 65  -HEVKRDQDALEMTAALAEFDMLDSLAYIINKISCELSCKCSGGGDAHSSTMVLLNYMSS 123

Query: 119 YSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDEL 178
           Y+W AK+VL+LAAFAV +GEFWLVAQL  +N+LA SVA+LKQLP+I   + +LKP F+ L
Sbjct: 124 YAWHAKVVLTLAAFAVIFGEFWLVAQLSAENTLAKSVALLKQLPDIAENFMSLKPHFEAL 183

Query: 179 NNLIGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHYH-AAYWTFRSIVACNSRILSF 237
             L+ A +D+T CIVEFK+LPS YIS D   MS+   H   A+YW  RSIVAC+S+I S 
Sbjct: 184 IRLVKAAMDVTMCIVEFKELPSEYISEDTPPMSVASTHIPIASYWVIRSIVACSSQIASL 243

Query: 238 RGLYT---PSTTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRIL 294
            G+      STT   ELS+L +KVS+I+  E+L  Q+    Q ID  R I+ ++NL+R+ 
Sbjct: 244 VGMRNESISSTTEAWELSSLAHKVSSIY--EHLKNQLVLCYQYIDDKRHIEAFHNLIRLF 301

Query: 295 GKHNRDNIKVLRALIYAED----LVDGETRTTVQIHVLKKKHVLLLISRPDDISQEEILF 350
              + DN+K+LRALIYA+D    LVDG T++ V + VL++KHVLLLIS   D+SQEEIL 
Sbjct: 302 ETVHVDNMKILRALIYAKDDVLPLVDGTTKSRVSLEVLRRKHVLLLISD-LDLSQEEILV 360

Query: 351 LSNMYKDLKESKEC--RIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVI 408
           L N+YKD +   +    +VW+P+VD +   + +  KF+ LQ  M WYS+ DP +I+P+ I
Sbjct: 361 LDNLYKDARARGDTHYEMVWIPVVDKATWNETSKQKFEYLQSLMAWYSVYDPFIIEPSAI 420

Query: 409 KYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLE 468
           KY+KE W +SK AI+V++DPQG++ + N  H LWIWG  AFPFT+E EE+LWK++ W+LE
Sbjct: 421 KYIKEVWNFSKTAILVALDPQGKLSSPNVVHMLWIWGNLAFPFTSEKEESLWKQEIWSLE 480

Query: 469 LLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNAK 528
           LLV  ID T+LEWM + + ICLYGG D  WI KF  +A  VA   +    MAYVGK NAK
Sbjct: 481 LLVDGIDPTVLEWMTDGKLICLYGGEDLEWIEKFTTTAISVAKAGKFELEMAYVGKSNAK 540

Query: 529 KRLEEISSSITKTESSHIVIDATKMWFFWARLERMLYWKLQHG----------------- 571
           +R++++  + T  + S+   + T +WFFW RLE MLY KLQHG                 
Sbjct: 541 ERMQKMIKTFTTRKFSYFWPNVTSIWFFWTRLESMLYSKLQHGRTVENDDIMSQVMTVLS 600

Query: 572 ------------MGKTQETARAKGTAAIDCMEKFHEWQDDALRNGFIQALNNYLQKIHPG 619
                        G T E ARAKG +A+ C++ F +W+D    +G +QA+N+YL K  P 
Sbjct: 601 FDGSDRGWAIFCRGAT-EMARAKGDSALICLQDFDKWKDRIEEDGVVQAMNDYLNKNKPP 659

Query: 620 KHCNRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCCPE 658
            HCNRLIL G  G IP  V CA+CGR ME +FMY CC E
Sbjct: 660 HHCNRLILPGSTGGIPQKVVCAECGRQMEKYFMYRCCVE 698

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806206|ref|NP_001241461.1| uncharacterized protein LOC100789215 [Glycine max] gi|307101642|gb|ADN32786.1| sieve element occlusion d [Glycine max]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 337/699 (48%), Positives = 450/699 (64%), Gaps = 50/699 (7%)

Query: 1   MALRNDLRMISASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSNIDGV 60
           M  R + +  S SDDSA M KQV A HAP G E+DV+PIL I+++I  R  A    ++G 
Sbjct: 16  MQQRKERQRFSTSDDSA-MTKQVQATHAPDGREIDVKPILQIVDEILVRFIA--RTVEGY 72

Query: 61  PNGKREHMDALHDNKSLAAFSTPEPLSDIIHKICCEISCK--GGGDALATTMALFKTLSS 118
              KR+  DAL    +LA F   + L+ II+KI CE+SCK  GGGDA ++TM L   +SS
Sbjct: 73  -EVKRDQ-DALEMTAALAEFDMLDSLAYIINKISCELSCKCSGGGDAHSSTMVLLNYISS 130

Query: 119 YSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDEL 178
           Y+W AK+VL+LAAFAV +GEFWLVAQL  +N+LA SVA+LKQLP+I   + ++KP F+ L
Sbjct: 131 YAWHAKVVLTLAAFAVIFGEFWLVAQLSAENTLAKSVALLKQLPDIAENFMSMKPHFEAL 190

Query: 179 NNLIGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHYH-AAYWTFRSIVACNSRILSF 237
             L+ A +D+T CIVEFK+LPS YIS D   MS+   H   A+YW  RSIVAC+S+I SF
Sbjct: 191 IRLVKAAMDVTMCIVEFKELPSEYISEDTPPMSVASTHIPIASYWVIRSIVACSSQISSF 250

Query: 238 RGLYT---PSTTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRIL 294
            G+      STT   ELS+L +KVS+I+  E+L  Q+    Q ID  R I+ ++NL+R+ 
Sbjct: 251 IGMRNESISSTTEAWELSSLAHKVSSIY--EHLKNQLVLCYQYIDDKRHIEAFHNLIRLF 308

Query: 295 GKHNRDNIKVLRALIYAED----LVDGETRTTVQIHVLKKKHVLLLISRPDDISQEEILF 350
              + DN+K+LRALIYA+D    LVDG  ++ V + VL++KHVLLLIS   D+SQEEIL 
Sbjct: 309 ETVHVDNMKILRALIYAKDDVLPLVDGTAKSRVSLEVLRRKHVLLLISD-LDLSQEEILV 367

Query: 351 LSNMYKDLKESKECR--IVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVI 408
           L N+YKD +   + +  +VW+PIVD +     +  KF+ LQ  M WYS+ DP +I+P+ +
Sbjct: 368 LDNLYKDARARGDTQYEMVWIPIVDKATWNDMSKQKFEYLQSLMAWYSVYDPFIIEPSAV 427

Query: 409 KYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLE 468
           KY+KE W +SKKAI+V++DPQGR+ + NA H +WIWG  AFPFT+E EE+LWK++ W+LE
Sbjct: 428 KYIKEVWNFSKKAILVALDPQGRLSSPNAVHMIWIWGNLAFPFTSEKEESLWKQEIWSLE 487

Query: 469 LLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNAK 528
           LLV  ID T+LEWM E + ICLYGG D  WI KF  +A  VA   +    MAY GK NAK
Sbjct: 488 LLVDGIDPTVLEWMTEGKLICLYGGEDLEWIEKFTATAISVAKAGKFELEMAYAGKSNAK 547

Query: 529 KRLEEISSSITKTESSHIVIDATKMWFFWARLERMLYWKLQHG----------------- 571
           +R++++  + T  + S+   + T +WFFW RLE MLY KL HG                 
Sbjct: 548 ERMQKMIKTFTTRKFSYFWPNVTSIWFFWTRLESMLYSKLLHGRTVEKDEIMSEVMTVLS 607

Query: 572 ------------MGKTQETARAKGTAAIDCMEKFHEWQDDALRNGFIQALNNYLQKIHPG 619
                        G T E ARAKG +A+ C++ F +W+     +G + A+N+YL K  P 
Sbjct: 608 FDGSDRGWAIFCRGAT-EMARAKGDSALRCLQDFDKWKGRIEEDGVVHAINDYLNKNKPP 666

Query: 620 KHCNRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCCPE 658
            HCNRLIL G  G IP  V CA+CGR ME +FMY CC E
Sbjct: 667 HHCNRLILPGSTGGIPQKVVCAECGRQMEKYFMYRCCVE 705

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501442|ref|XP_004161368.1| PREDICTED: uncharacterized LOC101204444 [Cucumis sativus]

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 314/696 (45%), Positives = 447/696 (64%), Gaps = 54/696 (7%)

Query: 4   RNDLRMISASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSNIDGVPNG 63
           + D RM+  SDD+A M KQ+LA H+P  H+VDV+PIL I+E++ R AT    +I    NG
Sbjct: 16  KTDRRMLPVSDDNA-MTKQILATHSPDSHKVDVKPILLIVEEVIRHATP---DIIAKGNG 71

Query: 64  KREHMDALHDNKSLAAF-STPEPLSDIIHKICCEISCK-GGGDALATTMALFKTLSSYSW 121
           +      L D   LA      EPL+ ++ K+  E++CK  GGDA ATTMA+   LS+YSW
Sbjct: 72  Q------LDDQLGLAEMDGMLEPLAHVVQKVGAELACKCSGGDAHATTMAILNLLSNYSW 125

Query: 122 DAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNL 181
           DAK+V++LAAF+V YG++WL+AQL T N LA ++A+LKQLP++    ++LKP FD L+ L
Sbjct: 126 DAKVVITLAAFSVTYGQYWLLAQLYTTNMLAKALALLKQLPDVIEHSNSLKPHFDALSKL 185

Query: 182 IGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHY-HAAYWTFRSIVACNSRILSFRGL 240
           I A+L++T CIV+F +LPS+YIS+D  AMS+    +  AAYWT +S+VAC S I S   L
Sbjct: 186 IAAILNVTKCIVKFTELPSQYISSDTPAMSVALASFPTAAYWTIKSLVACTSLIESLVSL 245

Query: 241 ---YTPSTTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRILGKH 297
                 STT   ELS+L +KV +IH   +L  Q++   Q ID+ R  + Y NLVRI    
Sbjct: 246 SHELIMSTTEVWELSSLAHKVKDIH--GHLQMQLKLCIQYIDEKRHEEAYQNLVRISETL 303

Query: 298 NRDNIKVLRALIYAED----LVDGETRTTVQIHVLKKKHVLLLISRPDDISQEEILFLSN 353
           + DN+K +RA I   +    + DG T+ TV + +LK+KHVLLLIS  D I  EE++ L N
Sbjct: 304 HLDNMKFIRAFISTREDIHPIYDGTTKMTVHLEILKRKHVLLLISDLD-IPHEEVMILDN 362

Query: 354 MYKDLKESKECR--IVWLPIVDGSIDRQ-QALDKFKNLQKRMPWYSIQDPAMIQPAVIKY 410
           ++K+  +  E R  IVW+PI+D +I++  ++  KF+ L++ MPW+S+ DP++I+ + I++
Sbjct: 363 LFKEAHQRPEIRYEIVWIPIIDPAIEQHSKSKHKFEELKQLMPWFSVYDPSIIELSTIRF 422

Query: 411 VKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLELL 470
           +KE+W + KK I+V++DPQG++ + NA H +WIWG  AFPFT+E EE LWK + W LELL
Sbjct: 423 IKEKWNFRKKTILVALDPQGKVSSTNALHMIWIWGNLAFPFTSEREEELWKTESWRLELL 482

Query: 471 VGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKR 530
           +  ID +IL+W  E R+IC+YGG D  WI++F +  K VA  A ++  MAYVGK NAK+R
Sbjct: 483 IDGIDFSILDWAAEGRYICIYGGEDTEWIKEFTSKTKKVAETANVDLQMAYVGKNNAKER 542

Query: 531 LEEISSSITKTESSHIVIDATKMWFFWARLERMLYWKLQHG------------------- 571
           + +IS  I+  + SH   D+T +WFFWARLE M+Y KL +G                   
Sbjct: 543 VRKISIMISDNKLSHYWADSTLVWFFWARLESMMYSKLNYGKTVENDPIMQEIMTLLSFD 602

Query: 572 ---------MGKTQETARAKGTAAIDCMEKFHEWQDDALRNGFIQALNNYLQKIHPGKHC 622
                     G+  ET RAKG   + C+  F +W+++    GF++AL +YLQ++    HC
Sbjct: 603 GSDKGWAIFFGRAGETTRAKGETVLSCILAFDQWKEEVEEKGFVKALADYLQQLKTPHHC 662

Query: 623 NRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCCPE 658
           NRLIL G+ G IP  V CA+CGR ME + MY CC E
Sbjct: 663 NRLILPGLAGNIPENVVCAECGRAMEKYLMYRCCVE 698

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733661|emb|CBI14908.3| unnamed protein product [Vitis vinifera]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 327/696 (46%), Positives = 437/696 (62%), Gaps = 48/696 (6%)

Query: 4   RNDLRMISASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSNIDGVPNG 63
           R+  + +  SDD+  MMKQ+ A H P G EV+V+PI+ +IEDI   AT     IDG   G
Sbjct: 20  RDHPKFLRMSDDTT-MMKQIQATHTPDGREVEVKPIVQVIEDILNHATPA---IDGTLYG 75

Query: 64  KREHMDALHDNKSLAAF-STPEPLSDIIHKICCEISCK--GGGDALATTMALFKTLSSYS 120
              H++AL D  S        E L+  I K+ CE+SCK  GGGDA ATTMA+F  LS YS
Sbjct: 76  NPPHLEALEDRSSQDGLHGILEELAYTIQKLSCELSCKCSGGGDAHATTMAVFNMLSHYS 135

Query: 121 WDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNN 180
           WDAK+VLSLAAFA NYGEFWLV QL   N LA SVA+LKQLP+I    ++LK +FD +  
Sbjct: 136 WDAKVVLSLAAFAANYGEFWLVIQLYATNPLAKSVALLKQLPDIIEHGNSLKSRFDAVTK 195

Query: 181 LIGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHY-HAAYWTFRSIVACNSRILSFRG 239
           LI  MLD+T  I+EFK+LPS YIS D   MS    H   AAYWT R IVAC S+I+S  G
Sbjct: 196 LIKVMLDVTKSIIEFKELPSLYISPDMPPMSSTMAHIPTAAYWTIRGIVACASQIISLIG 255

Query: 240 L---YTPSTTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRILGK 296
               YT  TT   ELSTL +KVS+IH  E+L +Q+    Q I++ +Q + YNNLVRI   
Sbjct: 256 TSNEYTSWTTESWELSTLAHKVSSIH--EHLIQQLIICHQHIEEKKQFESYNNLVRIFEM 313

Query: 297 HNRDNIKVLRALIYAED----LVDGETRTTVQIHVLKKKHVLLLISRPDDISQEEILFLS 352
            + DN KVL+ LIYA++    L+ G T+  V I +L++K VLLLIS   D+  EEI+ L 
Sbjct: 314 PHLDNQKVLKTLIYAKEDIQPLLQGNTKARVNIEILRRKTVLLLISD-LDLLHEEIVILH 372

Query: 353 NMYKD-LKESKECRIVWLPIVDGSID-RQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKY 410
             Y++ +K   E  +VWL +VD S    ++  +KF  LQK MPWY++  P++++PAV++Y
Sbjct: 373 KFYREQIKSDVEYEVVWLSVVDRSKPLTEENQNKFHELQKEMPWYTLLHPSLLEPAVVRY 432

Query: 411 VKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLELL 470
           +KE W ++KKAI+V +D QG+++ +NA H +WIWG +A+PFT   EE+LWKE+ W L+LL
Sbjct: 433 IKEVWHFTKKAILVVLDLQGKVVCRNALHMMWIWGNTAYPFTNSKEESLWKEETWRLKLL 492

Query: 471 VGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKR 530
           V DIDATI  W+ + ++IC+YGG +  WI  F  +A++VA  A I   M YVGK NAK++
Sbjct: 493 VDDIDATIFAWVNQGKYICMYGGVNSDWILNFNTAAREVAKAAGIQLEMVYVGKSNAKEQ 552

Query: 531 LEEISSSITKTESSHIVIDATKMWFFWARLERMLYWKLQHGM------------------ 572
           + +  + I      +   D T +WFFW R+E MLY K QHG                   
Sbjct: 553 VRKTITFIDSRSLGYCWTDPTNIWFFWTRMESMLYSKTQHGKTIENDSIFAGVLTMLSFD 612

Query: 573 GKTQ----------ETARAKGTAAIDCMEKFHEWQDDALRNGFIQALNNYLQKIHPGKHC 622
           G  Q          E A+AKG   + C  ++ +W D+  +NGF+ ALN +LQK+H  +HC
Sbjct: 613 GSDQGWSVICHGPTEMAKAKGDMILKCFTEYSDWSDNVQQNGFMPALNEHLQKLHTPEHC 672

Query: 623 NRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCCPE 658
           NRLIL G+NG IP  V CA+CGR ME +FMY CC +
Sbjct: 673 NRLILPGINGDIPEKVVCAECGRPMEKYFMYRCCTD 708

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440983|ref|XP_004138263.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101204444 [Cucumis sativus]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 314/702 (44%), Positives = 447/702 (63%), Gaps = 60/702 (8%)

Query: 4   RNDLRMISASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSNIDGVPNG 63
           + D RM+  SDD+A M KQ+LA H+P  H+VDV+PIL I+E++ R AT    +I    NG
Sbjct: 6   KTDRRMLPVSDDNA-MTKQILATHSPDSHKVDVKPILLIVEEVIRHATP---DIIAKGNG 61

Query: 64  KREHMDALHDNKSLAAF-STPEPLSDIIHKICCEISCK-GGGDALATTMALFKTLSSYSW 121
           +      L D   LA      EPL+ ++ K+  E++CK  GGDA ATTMA+   LS+YSW
Sbjct: 62  Q------LDDQLGLAEMDGMLEPLAHVVQKVGAELACKCSGGDAHATTMAILNLLSNYSW 115

Query: 122 DAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNL 181
           DAK+V++LAAF+V YG++WL+AQL T N LA ++A+LKQLP++    ++LKP FD L+ L
Sbjct: 116 DAKVVITLAAFSVTYGQYWLLAQLYTTNMLAKALALLKQLPDVIEHSNSLKPHFDALSKL 175

Query: 182 IGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHY-HAAYWTFRSIVACNSRILSFRGL 240
           I A+L++T CIV+F +LPS+YIS+D  AMS+    +  AAYWT +S+VAC S I S   L
Sbjct: 176 IAAILNVTKCIVKFTELPSQYISSDTPAMSVALASFPTAAYWTIKSLVACTSLIESLVSL 235

Query: 241 ---YTPSTTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRILGKH 297
                 STT   ELS+L +KV +IH   +L  Q++   Q ID+ R  + Y NLVRI    
Sbjct: 236 SHELIMSTTEVWELSSLAHKVKDIH--GHLQMQLKLCIQYIDEKRHEEAYQNLVRISETL 293

Query: 298 NRDNIKVLRALIYAED----LVDGETRTTVQIHVLKKKHVLLLISRPDDISQEEILFLSN 353
           + DN+K +RA I   +    + DG T+ TV + +LK+KHVLLLIS  D I  EE++ L N
Sbjct: 294 HLDNMKFIRAFISTREDIHPIYDGTTKMTVHLEILKRKHVLLLISDLD-IPHEEVMILDN 352

Query: 354 MYKDLKESKECR--IVWLPIVDGSIDRQ-QALDKFKNLQKRMPWYSIQDPAMIQPAVIKY 410
           ++K+  +  E R  IVW+PI+D +I++  ++  KF+ L++ MPW+S+ DP++I+ + I++
Sbjct: 353 LFKEAHQRPEIRYEIVWIPIIDPAIEQHSKSKHKFEELKQLMPWFSVYDPSIIELSTIRF 412

Query: 411 VKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLELL 470
           +KE+W + KK I+V++DPQG++ + NA H +WIWG  AFPFT+E EE LWK + W LELL
Sbjct: 413 IKEKWNFRKKTILVALDPQGKVSSTNALHMIWIWGNLAFPFTSEREEELWKTESWRLELL 472

Query: 471 VGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKR 530
           +  ID +IL+W  E R+IC+YGG D  WI++F +  K VA  A ++  MAYVGK NAK+R
Sbjct: 473 IDGIDFSILDWAAEGRYICIYGGEDTEWIKEFTSKTKKVAETANVDLQMAYVGKNNAKER 532

Query: 531 LEEISSSITKTESSHIVIDATKMWFFWARLERMLYWKLQHG------------------- 571
           + +IS  I+  + SH   D+T +WFFWARLE M+Y KL +G                   
Sbjct: 533 VRKISIMISDNKLSHYWADSTLVWFFWARLESMMYSKLNYGKTVENDPIMQEIMTLLSFD 592

Query: 572 ---------MGKTQETARAKGTAAIDCMEKFHEWQDDALRNGFIQALNNYLQKIHPGKHC 622
                     G+  ET RAKG   + C+  F +W+++    GF++AL +YLQ++    HC
Sbjct: 593 GSDKGWAIFFGRAGETTRAKGETVLSCILAFDQWKEEVEEKGFVKALADYLQQLKTPHHC 652

Query: 623 NRLILA------GVNGAIPGTVQCADCGRDMEMFFMYHCCPE 658
           NRLIL       G+ G IP  V CA+CGR ME + MY CC E
Sbjct: 653 NRLILPGLAGNIGIAGNIPENVVCAECGRAMEKYLMYRCCVE 694

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547988|ref|XP_002515051.1| conserved hypothetical protein [Ricinus communis] gi|223546102|gb|EEF47605.1| conserved hypothetical protein [Ricinus communis]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 306/701 (43%), Positives = 433/701 (61%), Gaps = 60/701 (8%)

Query: 4   RNDLRMISASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSNIDGVPNG 63
           R +  M S SDD+A MMKQ+ A HAP G E DVRP+L+++ED+F+RA   PS +  +   
Sbjct: 11  RGERHMFSTSDDNA-MMKQIQATHAPDGREFDVRPLLNVVEDVFQRAVP-PSGLATIVQP 68

Query: 64  KREHMDALHDNKSLAAFSTPEPLSDIIHKICCEISCK--GGGDALATTMALFKTLSSYSW 121
           + + +           +   + LS  I+KI CEI+CK  GGGDA ATT+A+F  +SSYSW
Sbjct: 69  QEKTLQN-------GFYEMLDLLSYTINKISCEIACKCSGGGDAHATTLAIFNLVSSYSW 121

Query: 122 DAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNL 181
           DAK+VL+LAAFAVNYGEFWLVA L   N LA +VA+LKQLP+I    DALKP+F+ +++L
Sbjct: 122 DAKLVLALAAFAVNYGEFWLVAHLYLTNPLAKAVALLKQLPDILERADALKPKFEAVSSL 181

Query: 182 IGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHY-HAAYWTFRSIVACNSRILSFRGL 240
           I A LD+  CIVEFK+LP +YI+ D   M +   H   A YWT RSIVAC ++I+   G+
Sbjct: 182 IRAALDVAKCIVEFKELPPQYITPDAPEMLIATAHIPTAVYWTIRSIVACATQIIGLIGM 241

Query: 241 ---YTPSTTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRILGKH 297
              Y  STT   ELS+L +KV +IH  E+L +Q+      ID+ R ++ Y  L+R+    
Sbjct: 242 GHEYMASTTEAWELSSLAHKVRSIH--EHLMRQLTLCYHHIDEKRHVEAYQTLIRLFDTI 299

Query: 298 NRDNIKVLRALIYAED----LVDGETRTTVQIHVLKKKHVLLLISRPDDISQEEILFLSN 353
           + DNIK+LRALIYA+D    L DG  +    + VL++K+VLL IS  D +  EE+  L  
Sbjct: 300 HIDNIKILRALIYAKDDQLPLYDGHNKKRASLDVLRRKNVLLYISDLD-LPHEELSMLEQ 358

Query: 354 MYKDLKES-----KECRIVWLPIVDGSIDRQQALDK-FKNLQKRMPWYSIQDPAMIQPAV 407
           MY + +++         +VWLP+V+ S     A  K F+NLQ  MPWY++  P+++ PAV
Sbjct: 359 MYSEARQNPARTESHYEVVWLPVVERSTAWNDAKQKQFENLQSVMPWYTVYHPSLLDPAV 418

Query: 408 IKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTL 467
           I+Y+KE WK++KK ++V +DPQG+++N NA H +WIWG +AFPFT+  EEALW+ + W +
Sbjct: 419 IRYIKEFWKFNKKPLLVVLDPQGKVVNPNAIHMMWIWGSAAFPFTSVREEALWRAENWKI 478

Query: 468 ELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNA 527
           +LL   ID  I  W+++ ++ICLYGG D  WIRKF  +A  +A  A I+  M YVGK N 
Sbjct: 479 DLLADTIDPIIHSWIQQGKYICLYGGEDIEWIRKFTMTANALAQAAGIDLEMLYVGKSNP 538

Query: 528 KKRLEEISSSITKTESSHIVIDATKMWFFWARLERMLYWKLQH----------------- 570
           ++++ + +  I   + SH++ D T +WFFW RLE M + K+QH                 
Sbjct: 539 REKVRKNNIIIQNEKLSHVLQDLTLIWFFWVRLESMWHSKVQHNRTVENDIIMQEIVTML 598

Query: 571 --------------GMG-KTQETARAKGTAAIDCMEKFHEWQDDALRNGFIQALNNYLQK 615
                         G G + ++ A+AKG+  ++C + +  W++ A   GF+ A+ +YL  
Sbjct: 599 SFDGSDQGWAVISKGSGAENRQLAKAKGSDILNCFDDYQSWREIAEEEGFVPAILDYLHG 658

Query: 616 IHPGKHCNRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCC 656
            H   HCNRLIL G  G+IP  V CA+C R ME F MY CC
Sbjct: 659 HHNPLHCNRLILPGTTGSIPEKVVCAECSRPMEKFIMYRCC 699

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147821880|emb|CAN65891.1| hypothetical protein VITISV_041167 [Vitis vinifera]

 Score =  570 bits (1468), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 317/694 (45%), Positives = 426/694 (61%), Gaps = 59/694 (8%)

Query: 4   RNDLRMISASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSNIDGVPNG 63
           R+  + +  SDD+  MMKQ+ A H P G EV+V+PI+ +IEDI   AT     IDG   G
Sbjct: 20  RDHXKFLRMSDDTT-MMKQIQATHTPDGREVEVKPIVQVIEDILNHATPA---IDGTLYG 75

Query: 64  KREHMDALHDNKSLAAF-STPEPLSDIIHKICCEISCKGGGDALATTMALFKTLSSYSWD 122
              H++AL D  S        E L+  I K+ C+  C GGGDA ATTMA+F  LS YSWD
Sbjct: 76  NPXHLEALEDRSSQDGLXGILEELAYTIQKLSCK--CSGGGDAHATTMAVFNMLSHYSWD 133

Query: 123 AKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLI 182
           AK+ LSLAAFA NYGEFWLV QL   N LA SVA+LKQLP+I    ++LK +FD +  LI
Sbjct: 134 AKVXLSLAAFAANYGEFWLVIQLYATNPLAKSVALLKQLPDIIEHGNSLKSRFDAVTKLI 193

Query: 183 GAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHY-HAAYWTFRSIVACNSRILSFRGL- 240
             MLD+T  I+EFK+LPS YIS D   MS    H   AAYWT R IVAC S+I+S  G  
Sbjct: 194 XVMLDVTKSIIEFKELPSLYISPDMPPMSSXMAHIPTAAYWTIRGIVACASQIISLIGTS 253

Query: 241 --YTPSTTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRILGKHN 298
             YT  TT   ELSTL +KVS+IH  E+L +Q+    Q I++ +Q + YNNLVRI    +
Sbjct: 254 NEYTSWTTESWELSTLAHKVSSIH--EHLIQQLIJCHQHIEEKKQFESYNNLVRIFEMPH 311

Query: 299 RDNIKVLRALIYAED----LVDGETRTTVQIHVLKKKHVLLLISRPDDISQEEILFLSNM 354
            DN KVL+ LIYA++    L+ G T+  V I +L++K VLLLIS   D+  EEI+ L   
Sbjct: 312 LDNQKVLKTLIYAKEDIQPLLQGNTKARVNIEILRRKTVLLLISD-LDLLHEEIVILHKF 370

Query: 355 YKD-LKESKECRIVWLPIVDGSID-RQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKYVK 412
           Y++ +K   E  +VWLP+VD S    ++  +KF  LQK MPWY++  P++++PAV++Y+K
Sbjct: 371 YREQIKSDVEYEVVWLPVVDRSKPLNEENQNKFHELQKEMPWYTLLHPSLLEPAVVRYIK 430

Query: 413 EEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLELLVG 472
           E W ++KKAI+V +D QG+++ +NA H +WIWG +A+PFT   EE+LWKE+ W L+LLV 
Sbjct: 431 EVWHFTKKAILVVLDLQGKVVCRNALHMMWIWGNTAYPFTNSKEESLWKEETWRLKLLVN 490

Query: 473 DIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKRLE 532
                      + ++IC+YGG +  WI  F  +A++VA  A I   M YVGK NAK+++ 
Sbjct: 491 -----------QGKYICMYGGVNSDWILNFNTAAREVAKAAGIQLEMVYVGKSNAKEQVR 539

Query: 533 EISSSITKTESSHIVIDATKMWFFWARLERMLYWKLQHGM------------------GK 574
           +  + I      +   D T +WFFW R+E MLY K QHG                   G 
Sbjct: 540 KTITFIDSRSLGYCWTDPTNIWFFWTRMESMLYSKTQHGKTIENDSIFAGVLTMLSFDGS 599

Query: 575 TQ----------ETARAKGTAAIDCMEKFHEWQDDALRNGFIQALNNYLQKIHPGKHCNR 624
            Q          E A+AKG   + C  ++ +W D+  +NGF+ ALN +LQK+H  +HCNR
Sbjct: 600 DQGWSVICHGPTEMAKAKGDMILKCFTEYSDWSDNVQQNGFMPALNEHLQKLHTPEHCNR 659

Query: 625 LILAGVNGAIPGTVQCADCGRDMEMFFMYHCCPE 658
           LIL G+NG IP  V CA+CGR ME +FMY CC +
Sbjct: 660 LILPGINGDIPEKVVCAECGRPMEKYFMYRCCTD 693

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572048|ref|XP_002526965.1| conserved hypothetical protein [Ricinus communis] gi|223533717|gb|EEF35452.1| conserved hypothetical protein [Ricinus communis]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 310/707 (43%), Positives = 430/707 (60%), Gaps = 60/707 (8%)

Query: 3   LRNDLRMISASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSNIDGVPN 62
           ++ D  + S+SD++A M KQ+ A H+P G E DV+P+L+I+EDIF RA  T  ++     
Sbjct: 112 IKGDRLLFSSSDENA-MTKQIQATHSPDGREFDVKPLLNIVEDIFERAAPTIESLALPAA 170

Query: 63  GKREHMDALHD----NKSLAAFSTPEPLSDIIHKICCEIS--CKGGGDALATTMALFKTL 116
           G +   + L D    + S+A     E LS II +I  EIS  C GGGDA ATTM++   L
Sbjct: 171 GHQARPEVLDDKIYHSSSMAML---ESLSFIIEQIASEISYKCSGGGDAHATTMSILNML 227

Query: 117 SSYSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFD 176
           SSY+WDAK+V++LAAF++ YGEFWLVAQ CT N LA SVA+LKQLP+I      LKP+FD
Sbjct: 228 SSYTWDAKLVIALAAFSMTYGEFWLVAQNCTSNQLAKSVAILKQLPDILEHSSMLKPRFD 287

Query: 177 ELNNLIGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHYH-AAYWTFRSIVACNSRIL 235
            + +LI  ML +  CIVEF+ LP RYI+ D  A+S    H   + YWT RSIVAC S+I+
Sbjct: 288 SVKSLIKVMLAIAKCIVEFQDLPPRYITMDVPALSTAMAHLPISVYWTIRSIVACASQII 347

Query: 236 SFRGL---YTPSTTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVR 292
              GL   +  STT   ELS+L +K+SN+    +L  Q+    + ID+ + ++ Y NL+ 
Sbjct: 348 GLIGLAHEHIASTTEAWELSSLAHKLSNMQ--SHLQNQLGLCYKHIDERKHMETYQNLIH 405

Query: 293 ILGKHNRDNIKVLRALIYAED----LVDGET-RTTVQIHVLKKKHVLLLISRPDDISQEE 347
           +    + DN++VL+ALIY++D    L++G T R  V I VL++K+VLLLIS   DI+Q+E
Sbjct: 406 LFDMAHIDNMRVLKALIYSKDDIQPLLEGTTKRRVVNIDVLRRKNVLLLISD-LDITQDE 464

Query: 348 ILFLSNMYKDL-----KESKECRIVWLPIVDGSIDRQQ-ALDKFKNLQKRMPWYSIQDPA 401
           I  L  +Y +      K+  +  IVWLPI+D ++      L KF+ LQ  M WYSI  P+
Sbjct: 465 ISILEQIYNESRLYPSKQESQYEIVWLPILDPAVPFNDIMLKKFEALQSVMTWYSIHHPS 524

Query: 402 MIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWK 461
           +I  AVI +VKE+W + KK I+V +DPQGR+   NA H +WIWG  AFPFT   EEALWK
Sbjct: 525 LIDRAVITFVKEKWNFGKKPILVVLDPQGRVACPNAVHMMWIWGSLAFPFTTIREEALWK 584

Query: 462 EKPWTLELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAY 521
           E+ W LELLV  ID  I  W++E R+ICLYGG D  WIRKF ++A+ VA  A I  GM Y
Sbjct: 585 EESWRLELLVAGIDPIITNWIEEGRYICLYGGEDMEWIRKFTSTARAVAQAAGIPLGMVY 644

Query: 522 VGKKNAKKRLEEISSSITKTESSHIVIDATKMWFFWARLERMLYWKLQHGMGK------- 574
           VGK N K+R+    S+I   + SH   D T +W+FW R+E M  W+ ++ +GK       
Sbjct: 645 VGKSNPKERVRRNVSTIMVEKLSHYWQDLTSIWYFWVRIESM--WRSKNQLGKTSENDSL 702

Query: 575 -----------------------TQETARAKGTAAIDCMEKFHEWQDDALRNGFIQALNN 611
                                  T+E  +AKG+ ++ C+  +  W+D   + GF+ +L +
Sbjct: 703 MKEIMAMLSFDSSEGGWAIFTKGTEELVKAKGSISLTCLSDYTIWKDQIQQKGFLPSLKD 762

Query: 612 YLQKIHPGKHCNRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCCPE 658
           YL+ +H   HCNRLIL    G IP  + C +C R+ME + +Y CC E
Sbjct: 763 YLKSLHTEHHCNRLILPSSAGMIPEKIVCTECSRNMERYILYKCCDE 809

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572046|ref|XP_002526964.1| conserved hypothetical protein [Ricinus communis] gi|223533716|gb|EEF35451.1| conserved hypothetical protein [Ricinus communis]

 Score =  563 bits (1451), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 302/703 (42%), Positives = 429/703 (61%), Gaps = 53/703 (7%)

Query: 3   LRNDLRMISASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSNIDGVPN 62
           ++ D  + S+SDD+A M KQ+ A H+P G E DV+P+L+I+EDIF RA     ++     
Sbjct: 109 IKADRLLFSSSDDNA-MTKQIQATHSPDGREFDVKPLLNIVEDIFDRAAPAIESLALPAA 167

Query: 63  GKREHMDALHDNKSLAA-FSTPEPLSDIIHKICCEIS--CKGGGDALATTMALFKTLSSY 119
                 +AL DN   ++  +  E LS +I ++  EI+  C  GG+A A TM++  TLSSY
Sbjct: 168 AHHARNEALDDNTYHSSVMAMLESLSFVIDRVASEITYKCSSGGEAHAITMSILNTLSSY 227

Query: 120 SWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELN 179
           +WDAK+V++LAAFA+ YGEFWLVAQ  T N LA S+A+LK +P+I      LKP+FD + 
Sbjct: 228 TWDAKLVIALAAFAMTYGEFWLVAQNYTSNQLAKSMAILKHMPDILEHSSMLKPRFDSVK 287

Query: 180 NLIGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHYH-AAYWTFRSIVACNSRILSFR 238
           NLI  ML +  CIVEF++LP +YI+ D  A+S    H   + YWT RSIVAC S+++   
Sbjct: 288 NLITVMLAIAKCIVEFQELPPQYITMDVPALSAAMAHLPISVYWTIRSIVACASQVIGLI 347

Query: 239 GL---YTPSTTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRILG 295
           GL   +  STT   ELS+L +K+SN+    +L  Q+    + ID+ + ++ Y NL+R+  
Sbjct: 348 GLGHEHVASTTEAWELSSLAHKLSNMQ--SHLQNQLGLCYKHIDERKHMEIYQNLIRLFE 405

Query: 296 KHNRDNIKVLRALIYAED----LVDGETRTTVQIHVLKKKHVLLLISRPDDISQEEILFL 351
             + DN++VL+ALIY++D    L++G T+  V I VL++K+VLLLIS  D I+Q+EI  L
Sbjct: 406 MAHIDNMRVLKALIYSKDDIQPLLEGTTKRRVNIDVLRRKNVLLLISDLD-ITQDEISIL 464

Query: 352 SNMYKDLK-----ESKECRIVWLPIVDGSID-RQQALDKFKNLQKRMPWYSIQDPAMIQP 405
             +Y + +     +  +  IVWLPI+D ++      L KF+ LQ  M WYSI  P++I  
Sbjct: 465 EQIYNESRLHPSRQESQYEIVWLPILDQAVPFNDNMLKKFEALQSVMTWYSIHHPSLIDR 524

Query: 406 AVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPW 465
           AVIK+VKE+W + KK I+V +DPQGR+   NA H +WIWG  AFPFT   EEALWKE+ W
Sbjct: 525 AVIKFVKEKWNFGKKPILVVLDPQGRVACPNAVHMMWIWGSLAFPFTTIREEALWKEESW 584

Query: 466 TLELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKK 525
            LELLV  ID  I  W++E R+ICLYGG D  WIRKF ++A+ VA  A I  GM YVGK 
Sbjct: 585 RLELLVDGIDPIITNWIEEGRYICLYGGEDMEWIRKFTSTARAVAQAAGIPLGMVYVGKS 644

Query: 526 NAKKRLEEISSSITKTESSHIVIDATKMWFFWARLERMLYWKLQHGMGKTQET------- 578
           N K+R+    ++I   + SH   D T +W+FW R+E M  W+ ++ +GKT E        
Sbjct: 645 NPKERVRRNIATIMVEKLSHYWQDLTSIWYFWVRIESM--WRSKNQLGKTSENDSLMKEI 702

Query: 579 -----------------------ARAKGTAAIDCMEKFHEWQDDALRNGFIQALNNYLQK 615
                                   +AKG+  + C+ ++  W+D   + GF+ +L +YL+ 
Sbjct: 703 MAMLSFDSSEGGWAIFTGGTDEIVKAKGSIFLTCLSEYTSWKDQIQQKGFLPSLKDYLKG 762

Query: 616 IHPGKHCNRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCCPE 658
           +H   HCNRLIL G  G IP  + C+DC R+ME + MY CC E
Sbjct: 763 LHTDHHCNRLILPGSAGTIPERIVCSDCSRNMERYIMYKCCDE 805

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424590|ref|XP_002282172.1| PREDICTED: uncharacterized protein LOC100261038 [Vitis vinifera] gi|296081390|emb|CBI16823.3| unnamed protein product [Vitis vinifera]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 310/703 (44%), Positives = 430/703 (61%), Gaps = 56/703 (7%)

Query: 4   RNDLRMISASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSN---IDGV 60
           R+  RM  ASDD+  +MKQ+ A H P G + DV+P+L I+E+I  R T++ +    + G+
Sbjct: 16  RSGDRMF-ASDDNG-IMKQIHAIHVPDGRDFDVKPLLRIVENILLRTTSSTTLTPALPGI 73

Query: 61  PNGKRE-HMDALHDNKSLAAFSTP--EPLSDIIHKICCEISCK--GGGDALATTMALFKT 115
           P G  +  +DAL D K+L   S+   + L+  I+KI CEISCK   GGDA AT +A+F  
Sbjct: 74  PLGSNQAQLDALED-KTLQDGSSNMIDLLAHTINKISCEISCKCTSGGDAHATAVAVFNI 132

Query: 116 LSSYSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQF 175
           LSSYSWDAK+VL+LAAFA  YGEFWLVA L   N LA SVA+LKQLP+I    DALKP+F
Sbjct: 133 LSSYSWDAKVVLALAAFATTYGEFWLVAHLYPTNPLAKSVAILKQLPDILEHTDALKPKF 192

Query: 176 DELNNLIGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHY-HAAYWTFRSIVACNSRI 234
           + L++LI  M+D+  CIV+FK+LP +YI+ D  AM     H   A YWT RSIVAC S+I
Sbjct: 193 EALSSLIKVMVDVAKCIVQFKELPPQYITPDTPAMVTAIAHIPTAVYWTIRSIVACASQI 252

Query: 235 LSFRGL---YTPSTTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLV 291
            S  G+   Y  ST    ELS L +KVSN++   +L  Q+   +Q I+  + I+ Y  LV
Sbjct: 253 ASLIGMSHEYIASTMDAWELSGLAHKVSNMY--GHLQSQLYLCQQHINDKKHIEAYMMLV 310

Query: 292 RILGKHNRDNIKVLRALIYAED----LVDGETRTTVQIHVLKKKHVLLLISRPDDISQEE 347
           R+    + DN+K++R LIYA+D    L DG ++  V + +L++K+VLL IS  + +  EE
Sbjct: 311 RLFETPHIDNMKIIRVLIYAKDDQPPLFDGLSKRKVSLDILRRKNVLLFISELE-VPHEE 369

Query: 348 ILFLSNMYKDLKE-----SKECRIVWLPIVDGSIDRQQALDK-FKNLQKRMPWYSIQDPA 401
           +  L  MY++ ++       +  +VW+P+VD S    +  ++ F+ L+  MPWYS+  P+
Sbjct: 370 LFILDQMYQESRQDPTRPESQYEVVWMPMVDRSTPWTEEKNRQFETLKSMMPWYSVDHPS 429

Query: 402 MIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWK 461
            I  AVIKY+KE W ++KK ++V +DPQGR++N NA H +WIWG  AFPFT+  EE LWK
Sbjct: 430 SIDLAVIKYIKEMWGFNKKPLLVVLDPQGRVVNNNAIHMMWIWGSLAFPFTSLREEGLWK 489

Query: 462 EKPWTLELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAY 521
            + W +ELL   ID  I  W+ E  +ICL+GG D  WIRKF   AK +A  A I   M Y
Sbjct: 490 GETWRMELLADTIDPIIHNWISEGSYICLFGGEDMEWIRKFCILAKAIARAAGIRLEMLY 549

Query: 522 VGKKNAKKRLEEISSSITKTESSHIVIDATKMWFFWARLERMLYWKLQHGM--------- 572
           VGK N ++++++I++ I+    SH + D   +WFFW RLE M Y K+QHG          
Sbjct: 550 VGKSNPREKIQKINAIISTDNLSHTLPDLHLVWFFWVRLESMWYSKMQHGKTVESDPIMQ 609

Query: 573 ---------GKTQ----------ETARAKGTAAIDCMEKFHEWQDDALRNGFIQALNNYL 613
                    G  Q          E  +AKG   + C+  +  W+++    GF+ ALN+YL
Sbjct: 610 EIVSMLSFDGSDQGWVVFSKGSGEMTKAKGENIVRCLSDYDVWKNNVSSKGFLGALNDYL 669

Query: 614 QKIHPGKHCNRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCC 656
           ++IH   HCNRLIL G  G+IP  V CA+CGR ME F MY CC
Sbjct: 670 REIHTPHHCNRLILPGTTGSIPERVVCAECGRPMEKFVMYRCC 712

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	658
TAIR|locus:2084143	822	SEOa "sieve element occlusion	0.823	0.659	0.315	8.3e-83
TAIR|locus:2084158	740	SEOR1 "Sieve-Element-Occlusion	0.869	0.772	0.310	1.9e-81
TAIR|locus:2008590	576	AT1G67790 "AT1G67790" [Arabido	0.317	0.362	0.266	5.6e-39

TAIR|locus:2084143 SEOa "sieve element occlusion a" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 8.3e-83, Sum P(2) = 8.3e-83
 Identities = 189/599 (31%), Positives = 289/599 (48%)

Query:     4 RNDLRMISASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSNIDGVPNG 63
             RN   M S SDD   M  +VL  H+P     DV  +LS++ DIF+  +  PS     P  
Sbjct:   128 RNGRPMFSLSDDRV-MADRVLKTHSPDMIFFDVTSLLSVVNDIFK--SHVPSIDSSAPKP 184

Query:    64 KREHMDALHDNKSLAAFSTPEPLSDIIHKICCEISCK--GGGDALA-------------T 108
                  D   D+ S   F+      D+I +I CEI CK   GG++               T
Sbjct:   185 SLVFKDYA-DHTSFETFA------DLIDQISCEIDCKCLHGGESHGMMTSGLHLDSRNTT 237

Query:   109 TMALFKTLSSYSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGY 168
             T ++   +S Y WDAK+VL L+A AV YG F L+A+    N L  S+A++KQLP I +  
Sbjct:   238 TFSVLSLVSKYRWDAKLVLVLSALAVKYGVFLLLAETHATNQLTKSLALIKQLPSIFSRQ 297

Query:   169 DALKPQFDELNNLIGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHYHAA-YWTFRSI 227
             +AL  + D+   L+  M+DLT  I++  QLP  +I+    A +   DH   A YW  R +
Sbjct:   298 NALHQRLDKTRILMQDMVDLTTTIIDIYQLPPNHIT---AAFT---DHIPTAVYWIVRCV 351

Query:   228 VACNSRILSFRGLYXXXXXXXXXXXXXXYKVSNIHV-SENLTKQIEFWRQQIDKIRQI-- 284
             + C S I    G                 +VS IH  SE L K   +  +Q  K +    
Sbjct:   352 LICVSHISGASGF-------KQDQIMSFMEVSEIHENSERLRKINAYLLEQFKKSKMTIE 404

Query:   285 -----KEYNNLVRILGKH-NRDNIKVLRALIYAEDLV---DGETRTTVQIXXXXXXXXXX 335
                  +EY  L++      + D +  L  L+   D +    G ++  V I          
Sbjct:   405 EGIIEEEYQELIQTFTTIIHVDVVPPLLRLLRPIDFLYHGAGVSKRRVGINVLTQKHVLL 464

Query:   336 XISRPDDISQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWY 395
              IS  ++I ++E+  L ++Y +  + +   I+W+P+ D   +   A  KF+ L   M WY
Sbjct:   465 LISDLENI-EKELYILESLYTEAWQ-QSFEILWVPVQDFWTEADDA--KFEALHMNMRWY 520

Query:   396 SIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAET 455
              + +P  ++ A I++V+E W +  + I+V++DP+G++++ NAF  +WIW   A PFT   
Sbjct:   521 VLGEPRKLRRAAIRFVREWWGFKNRPILVALDPKGQVMSTNAFPMVWIWQPFAHPFTTAR 580

Query:   456 EEALWKEKPWTLELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQI 515
             E  LW E+ W LE L+   D   L  + + ++ICLYGG D  WI+ F +  ++VA  A I
Sbjct:   581 ERDLWSEQEWNLEFLIDGTDPHSLNQLVDGKYICLYGGEDMQWIKNFTSLWRNVAKAANI 640

Query:   516 NWGMAYVGKKNAKKRLXXXXXXXXXXXXXHIVIDATKMWFFWARLERMLYWKLQHGMGK 574
                M YVGK+N K  +             H + D  ++WFFW R+E M  W+ +  M K
Sbjct:   641 QLEMVYVGKRNPKNGIQPIINTIREENLSHTLPDLFQIWFFWTRVESM--WESKQRMLK 697

GO:0009507 "chloroplast" evidence=ISM

GO:0043621 "protein self-association" evidence=IPI

TAIR|locus:2084158 SEOR1 "Sieve-Element-Occlusion-Related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 762 (273.3 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
 Identities = 191/616 (31%), Positives = 301/616 (48%)

Query:    10 ISASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRAT--ATPSNIDGVPNGKREH 67
             ++ S D + M+K +   H+P   EV VR +LS++EDI  RAT  +  +N   +P      
Sbjct:    34 LAMSSDESMMLKLIQQTHSPDAREVQVRGLLSLVEDILDRATLDSEDTNASMLPLPTE-- 91

Query:    68 MDALHDNKSLAAFSTPEPLSDIIHKIC-CEISCKGGGDALATTMALFKTLSSYSWDAKMV 126
              D L  +  ++   +     D +   C        G D+   TM++F+ LSS+ WD K+V
Sbjct:    92 -DKLMQSSMMSVLDSVSYAIDRV--ACEIAYKSLTGSDSHEITMSVFEHLSSFQWDGKLV 148

Query:   127 LSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLP-----EIPTGYDALKPQFDELNNL 181
             L+LAAFA+NYGEFWL+ Q  ++N LA S+A+LK +P      + +    L     E+ ++
Sbjct:   149 LTLAAFALNYGEFWLLVQFYSKNQLAKSLAMLKLVPVQNRVTLESVSQGLNDLIREMKSV 208

Query:   182 IGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRILSFRGL- 240
                +++L+     +       +S     + +      A YWT RS++AC S+I     + 
Sbjct:   209 TACVVELSELPDRYITPDVPQLSRILSTIPI------AVYWTIRSVIACISQINMITAMG 262

Query:   241 --YXXXXXXXXXXXXXXYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRILGKHN 298
                               K+ NIH  ++L + +    + I+K R  +    L  +    +
Sbjct:   263 HEMMNTQMDLWETSMLANKLKNIH--DHLAETLRLCYRHIEKQRSSESLKVLHSLFDTTH 320

Query:   299 RDNIKVLRALIYAED----LVDGETRTTVQIXXXXXXXXXXXISRPDDISQEEILFLSNM 354
              DN+K+L AL++ +     L DG T+  V +           IS  + I Q+E+     +
Sbjct:   321 IDNMKILTALVHPKPHITPLQDGLTKRKVHLDVLRRKTVLLLISDLN-ILQDELSIFEQI 379

Query:   355 YK---------DLKESKECRIVWLPIVDG--SIDRQQALDK-FKNLQKRMPWYSIQDPAM 402
             Y          D K      +VW+P+VD     +R   L K F++L+  MPWYS+  P +
Sbjct:   380 YTESRRNLVGVDGKSHMPYEVVWVPVVDPIEDFERSPILQKKFEDLRDPMPWYSVDSPKL 439

Query:   403 IQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKE 462
             I+  V+++++  W +  K I+V +DPQG   + NA H +WIWG  AFPFT   EE LW+ 
Sbjct:   440 IERHVVEFMRGRWHFMNKPILVVIDPQGNEASLNALHMIWIWGTEAFPFTRSREEELWRR 499

Query:   463 KPWTLELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYV 522
             + ++L L+V  ID+ I  W+K + +I LYGG+D  WIR+F  +AK  A  + +N  MAYV
Sbjct:   500 ETFSLNLIVDGIDSVIFNWIKPDNYIFLYGGDDLDWIRRFTMAAKATAKDSNVNLEMAYV 559

Query:   523 GKKNAKKR--LXXXXXXXXXXXXXHIVIDATKMWFFWARLERMLYWKLQHGMGKTQETAR 580
             GK+N   R  +             H   +   MWFFW RLE MLY K+Q G     +   
Sbjct:   560 GKRNHSHREQIRRISEVIRSENLSHSWAEPALMWFFWTRLESMLYSKIQLGKADDHDDVM 619

Query:   581 AKGTAAIDCMEKFHEW 596
              +G   I   +K   W
Sbjct:   620 -QGIKKILSYDKLGGW 634

GO:0005634 "nucleus" evidence=ISM

GO:0043621 "protein self-association" evidence=IPI

TAIR|locus:2008590 AT1G67790 "AT1G67790" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 5.6e-39, Sum P(3) = 5.6e-39
 Identities = 61/229 (26%), Positives = 106/229 (46%)

Query:   346 EEILFL-SNMY---KDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPA 401
             E + FL   +Y    +    +   I+W+PI        +  + F      +PW S++ P 
Sbjct:   250 EPLFFLLQQLYDHPSNTNTEQNYEIIWVPIPSSQKWTDEEKEIFDFYSNSLPWISVRQPW 309

Query:   402 MIQPAVIKYVKEEWKYS-KKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALW 460
             ++   ++ + K+EW Y   +A++V +D  GR +N NA   + IWG+ A+PF+   E+ LW
Sbjct:   310 LMSSTILNFFKQEWHYKDNEAMLVVIDSNGRFVNMNAMDMVLIWGVKAYPFSVSREDELW 369

Query:   461 KEKPWTLELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMA 520
             KE  W++ LL+  I  T      E R IC++G  +  WI +F + A+ + +       + 
Sbjct:   370 KEHGWSINLLLDGIHPTF-----EGREICIFGSENLDWIDEFVSLARKIQNLG-FQLELI 423

Query:   521 YVGKKNAKKRLXXXXXXXXXXXXXHIVIDATKMWFFWARLERMLYWKLQ 569
             Y+  +   +R               I+   T    FW RLE +   KL+
Sbjct:   424 YLSNQRRDERAMEESS---------ILFSPTLQQLFWLRLESIERSKLK 463

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	658
PF14576	286	SEO_N: Sieve element occlusion N-terminus	100.0
PF14577	235	SEO_C: Sieve element occlusion C-terminus	100.0
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.9
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.82
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.76
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.74
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.51
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.72
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.67
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.61
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.6
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.38
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.37
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.37
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.33
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	98.28
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.26
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.24
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.23
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.14
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.13
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.13
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.13
PLN02412	167	probable glutathione peroxidase	98.06
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	98.03
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.0
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	97.98
PTZ00256	183	glutathione peroxidase; Provisional	97.98
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	97.98
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	97.96
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	97.93
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	97.93
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	97.92
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	97.91
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	97.88
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.83
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	97.83
PTZ00056	199	glutathione peroxidase; Provisional	97.81
PTZ00253	199	tryparedoxin peroxidase; Provisional	97.8
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	97.65
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	97.63
PRK13190	202	putative peroxiredoxin; Provisional	97.62
PTZ00137	261	2-Cys peroxiredoxin; Provisional	97.42
PRK15000	200	peroxidase; Provisional	97.39
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	97.37
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	97.3
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	97.25
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	97.18
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	97.16
PRK13728	181	conjugal transfer protein TrbB; Provisional	97.11
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	97.07
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	97.07
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	97.03
PRK13599	215	putative peroxiredoxin; Provisional	97.01
PRK13191	215	putative peroxiredoxin; Provisional	96.96
PRK13189	222	peroxiredoxin; Provisional	96.93
PRK10606	183	btuE putative glutathione peroxidase; Provisional	96.87
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	96.64
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	96.52
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	96.34
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	95.96
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	95.94
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	95.85
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	95.82
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	95.74
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	95.69
PTZ00051	98	thioredoxin; Provisional	95.53
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	95.45
PRK10996	139	thioredoxin 2; Provisional	95.39
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	95.35
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	95.19
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	95.05
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	94.96
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	94.95
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	94.83
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	94.75
PHA02278	103	thioredoxin-like protein	94.73
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	94.69
PRK09381	109	trxA thioredoxin; Provisional	94.69
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	94.55
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	94.41
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	94.36
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	94.33
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	93.81
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	93.73
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	93.5
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	93.46
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	93.36
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	92.92
PTZ00102	477	disulphide isomerase; Provisional	92.91
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	92.9
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	92.71
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	92.57
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	92.27
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	91.84
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	91.79
cd02947	93	TRX_family TRX family; composed of two groups: Gro	91.75
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	91.33
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	90.95
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	90.86
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	90.54
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	89.75
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	89.6
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	89.37
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	88.93
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	88.43
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	87.81
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	86.79
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	86.0
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	85.94
smart00594	122	UAS UAS domain.	85.69
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	85.66
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	85.63
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	85.42
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	85.1
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	85.09
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	84.83
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	84.2
PTZ00062	204	glutaredoxin; Provisional	84.0
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	83.32
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	83.28
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	81.7
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	81.57
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	81.55
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	81.22
PTZ00102	477	disulphide isomerase; Provisional	81.16
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	80.47

>PF14576 SEO_N: Sieve element occlusion N-terminus

Probab=100.00  E-value=8.1e-105  Score=818.42  Aligned_cols=279  Identities=48%  Similarity=0.797  Sum_probs=259.8

Q ss_pred             cccccHHHHHHHHhhcCCCCCccChhHhHHHHHHHHHhhcCCCCCC-CCCCCCCccchhhhccccccccc-CCCCCchhh
Q 046837           12 ASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSNI-DGVPNGKREHMDALHDNKSLAAF-STPEPLSDI   89 (658)
Q Consensus        12 ~sdd~i~~~~~I~~TH~pd~~~~Dv~~Ll~~venIl~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f-~~le~l~~~   89 (658)
                      +|||++ ||||||+||+||||+|||+|||++||||++||++   ++ ++.....+.+.+++++++.+.++ +++||++++
T Consensus         1 ~~~D~~-ilk~I~~TH~pd~~~~Dv~~Ll~~venIl~~at~---~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~l~~~   76 (286)
T PF14576_consen    1 TSDDDQ-ILKQIYATHVPDGRKFDVEPLLHLVENILKRATP---IVGDSIDTVVQKHPEALEDKDYQIEPIASFEPLFYT   76 (286)
T ss_pred             CCcHHH-HHHHHHHhcCCCCCcccHHHHHHHHHHHHHHhhh---hhcchhhhhhhcchhhhhhhhcccchHhhcCchhHH
Confidence            467777 8999999999999999999999999999999988   34 22223344444555566666566 788999999


Q ss_pred             hhhhheeecccC--CCchhhhHHHHHHhhccCcchhHHHHHHHHHHHhhcchhhhhhccCccHHHHHHHHHhCCCCCCCC
Q 046837           90 IHKICCEISCKG--GGDALATTMALFKTLSSYSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTG  167 (658)
Q Consensus        90 i~~Iscem~ck~--~~~aH~TTm~Il~~Ls~YsWDAK~vLtLAAFAl~YGeFwlL~q~~~~n~LakSlA~Lkqlp~i~~~  167 (658)
                      ||||||||+|||  |+|||+|||+|||+||+|||||||||||||||+||||||||+|+|++||||||||+|||||+|+||
T Consensus        77 i~rIScem~ck~~g~~~aH~TTm~Il~~Ls~YsWDAK~VLtLAAFAl~YGeFwlLaq~~~~n~LakSlA~LkqlP~i~~~  156 (286)
T PF14576_consen   77 IKRISCEMSCKCSGEEDAHQTTMSILNMLSSYSWDAKAVLTLAAFALEYGEFWLLAQIYPTNPLAKSLAILKQLPDILEH  156 (286)
T ss_pred             HHHHHHHheecCCCCchHhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhHHHHhhhcccCHHHHHHHHHhcchhhhhh
Confidence            999999999999  899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccchHHhHHHHHHHHHhhHHHhcccCCcccccCCCcchhhHHHHH-HHHHHHHHHHHHhhhcccccccc-c-CCC
Q 046837          168 YDALKPQFDELNNLIGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHY-HAAYWTFRSIVACNSRILSFRGL-Y-TPS  244 (658)
Q Consensus       168 ~~~lk~~~~~ln~LVk~m~dV~~cIie~~~L~~~y~~~dvpal~~a~~~I-~~vYW~I~sivac~~qi~~l~~~-~-~~s  244 (658)
                      .+++||||+++|+|||+||||++||+||++||++||++|||+|++|++|| ++|||||||+|||++||++|+++ + +.+
T Consensus       157 ~~~lk~r~~~ln~LVk~mldV~~cIief~~L~~~y~~~Dvpal~~a~~~IPvavYWtI~siVAc~sqI~~lt~~~~e~~~  236 (286)
T PF14576_consen  157 SDSLKPRFDALNNLVKAMLDVTKCIIEFEELPSQYITKDVPALSTALAHIPVAVYWTIRSIVACASQITGLTGMGHEITS  236 (286)
T ss_pred             hhcccchhHHHHHHHHHHHHHHHHHHHHHHcChhhccccchhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            99999999999999999999999999999999999999999999999999 99999999999999999999999 4 467


Q ss_pred             CccchhhchhhhhhhhcccchhHHHHHHHHHHHHHhHhhHHHHHHHHHHhccCCc
Q 046837          245 TTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRILGKHNR  299 (658)
Q Consensus       245 ~~~~~eLS~l~~Kl~~I~~~~~L~~~l~~c~~~I~~~~~~e~y~~l~~lf~~~~~  299 (658)
                      ++++||||+|++||++|+  +|||+||+.|+||||+   +|+|++|+++|++||+
T Consensus       237 ~~~~~eLS~l~~KL~~I~--~~Lk~qL~~C~~~I~~---~E~y~~l~~lf~t~~~  286 (286)
T PF14576_consen  237 TTEAWELSSLAHKLSNIL--SHLKKQLDLCRQQIEE---IEDYQMLLKLFETPHI  286 (286)
T ss_pred             chhhhHHhhHHHHHHHHH--HHHHHHHHHHHHHHHH---HHHHHHHHHHhhcCCC
Confidence            899999999999999999  9999999999999999   8999999999999974

>PF14577 SEO_C: Sieve element occlusion C-terminus

Probab=100.00  E-value=4.4e-81  Score=626.83  Aligned_cols=206  Identities=43%  Similarity=0.886  Sum_probs=202.4

Q ss_pred             hhhHHHhhhcCCCchhhcccCCChhhhhhhcCCcEEEEEccCCchHHHHHHHHHHHHHhhcCCceeEEEeeccChhhHHH
Q 046837          453 AETEEALWKEKPWTLELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKRLE  532 (658)
Q Consensus       453 ~~r~eeL~~~e~w~le~Lv~~id~~I~~~i~egK~I~LYgg~d~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn~~e~v~  532 (658)
                      ++|+|+||++|+|+|++|+++|||.|.+||+||||||||||+|++|||+||.++++||++|++++||+||||+||+|+||
T Consensus         1 ~sree~Lw~e~~W~l~lL~d~Idp~i~~wi~e~kyI~iYGG~D~eWIq~Ft~~a~~va~~a~i~LEm~yvGKsn~~e~v~   80 (235)
T PF14577_consen    1 KSREESLWKEETWFLELLVDGIDPTILNWIKEGKYIFIYGGEDMEWIQEFTKAARKVAKAADIQLEMVYVGKSNPREQVR   80 (235)
T ss_pred             CchHHHhhhhhhHHHHHHHcccCHhHHHHhhCCcEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCChHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccccccccccccCcchhhHHHHHHHHHHHHHHhcCCC----------------------------Cccceeccccc
Q 046837          533 EISSSITKTESSHIVIDATKMWFFWARLERMLYWKLQHGMG----------------------------KTQETARAKGT  584 (658)
Q Consensus       533 ~~~~~i~~e~ls~~~~d~t~v~~FW~rlesm~~sK~q~~~~----------------------------Gs~~~~~g~G~  584 (658)
                      +++++|+.|||||+|+|||+|||||+|||||++||+|+|++                            ||+++++|||+
T Consensus        81 ~~~~~i~~e~ls~~~~d~t~v~~FW~rlESm~~SK~qlg~~~~~D~i~qEV~~LLs~d~~~~GWavlskGs~v~~~ghG~  160 (235)
T PF14577_consen   81 KIIATITSEKLSHSWEDPTMVWFFWTRLESMLFSKIQLGKTDENDPIMQEVKKLLSYDQDEQGWAVLSKGSNVMVKGHGE  160 (235)
T ss_pred             HHhhhhhhcccccccCCcchhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHhCCCCCCCceEEEecCCceeeecccc
Confidence            99999999999999999999999999999999999999775                            99999999999


Q ss_pred             hHHHHHHhhccchhhhhhccHHHHHHHHhhccC-CCCCccceeccCCCCCCCceeeCCCCCcccceeeeeccCCC
Q 046837          585 AAIDCMEKFHEWQDDALRNGFIQALNNYLQKIH-PGKHCNRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCCPE  658 (658)
Q Consensus       585 ~~~~~l~~f~~Wk~~v~~kGF~~Af~~y~~~~~-~~~~C~~~~~p~~~g~ip~~i~CpeC~R~ME~~v~Y~CCh~  658 (658)
                      +|++||++|+.||++|+++||++||+|||++++ +||||||+++|+++|+||++|+|||||||||+||+||||||
T Consensus       161 ~~l~tl~~f~~Wk~~v~~~GF~~Af~e~~~~~~~~~~~C~~~~~p~~~g~ipe~i~CpeC~R~MEk~v~YkCChd  235 (235)
T PF14577_consen  161 TMLQTLAEFDEWKENVPEKGFDPAFKEYYEKLHDTPHHCNRLEFPNSAGRIPETIVCPECGRPMEKFVMYKCCHD  235 (235)
T ss_pred             cHHHHHHHhhHhhccCcccCHHHHHHHHHhccCCCCCCCeeEeccCcccCCCceeECCCCCCchhhceeeeccCC
Confidence            999999999999999999999999999999998 69999999999999999999999999999999999999997

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.90  E-value=3.8e-24  Score=204.77  Aligned_cols=130  Identities=18%  Similarity=0.270  Sum_probs=116.2

Q ss_pred             cccCCCCcEEecc-cccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCC-CCeeEEEEecccCCCcchhhHHHHHHhh
Q 046837          314 LVDGETRTTVQIH-VLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKES-KECRIVWLPIVDGSIDRQQALDKFKNLQ  389 (658)
Q Consensus       314 l~~g~~~~kV~Is-~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~-~~fEIVwIpivD~s~~W~dde~~F~~~~  389 (658)
                      .+.+.+|..|.++ .|+||.|+|||||+ ||||  +|||+|+++|++++.+ ..|||||||.       |+++++|++|+
T Consensus        16 ~l~~~~~~~~~~~~~l~gKvV~lyFsA~-wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~-------D~~~~~~~~y~   87 (157)
T KOG2501|consen   16 RLRKQDGTEVLASEALQGKVVGLYFSAH-WCPPCRDFTPILKDFYEELKDNAAPFEVVFVSS-------DRDEESLDEYM   87 (157)
T ss_pred             eeeccCCccchHhHhhCCcEEEEEEEEE-ECCchhhCCchHHHHHHHHHhcCCceEEEEEec-------CCCHHHHHHHH
Confidence            5667788899999 69999999999999 9975  7899999999999864 7899999997       23888999999


Q ss_pred             c--CCCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHHhhhc
Q 046837          390 K--RMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKE  462 (658)
Q Consensus       390 ~--~MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~  462 (658)
                      .  .|||++|||.+    +.++.+.+.|.+++||.|++++|+|.+++.||+.+|..+|.       .+-.+++++
T Consensus        88 ~~~~~~W~~iPf~d----~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~-------~~~~a~~~e  151 (157)
T KOG2501|consen   88 LEHHGDWLAIPFGD----DLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS-------ADPKALVDE  151 (157)
T ss_pred             HhcCCCeEEecCCC----HHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc-------cCHHHHHHH
Confidence            8  49999999988    78999999999999999999999999999999999999998       556666665

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.82  E-value=7.1e-20  Score=166.65  Aligned_cols=126  Identities=22%  Similarity=0.343  Sum_probs=111.6

Q ss_pred             ccCCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCC-CCeeEEEEecccCCCcchhhHHHHHHhhcC
Q 046837          315 VDGETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKES-KECRIVWLPIVDGSIDRQQALDKFKNLQKR  391 (658)
Q Consensus       315 ~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~-~~fEIVwIpivD~s~~W~dde~~F~~~~~~  391 (658)
                      +...+|+.|++++++||.|+|+|.+. ||++|  +.+.|.++|++++.. .+++||+|+++       ++++.|.++.+.
T Consensus         3 l~~~~G~~v~l~~~~gk~vll~Fwa~-wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d-------~~~~~~~~~~~~   74 (131)
T cd03009           3 LLRNDGGKVPVSSLEGKTVGLYFSAS-WCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWD-------RDEESFNDYFSK   74 (131)
T ss_pred             ccccCCCCccHHHhCCcEEEEEEECC-CChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECC-------CCHHHHHHHHHc
Confidence            44567889999999999999999999 99765  477899999999764 58999999972       366789999999


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccccC
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPF  451 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPF  451 (658)
                      +||+.+||++   ....+.+.+.|++.++|+++++|++|+++..||.+|+..||.+||||
T Consensus        75 ~~~~~~~~~~---~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~  131 (131)
T cd03009          75 MPWLAVPFSD---RERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF  131 (131)
T ss_pred             CCeeEcccCC---HHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence            9999999965   34566788899999999999999999999999999999999999998

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.76  E-value=1.7e-18  Score=164.87  Aligned_cols=117  Identities=17%  Similarity=0.305  Sum_probs=101.5

Q ss_pred             cEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCC------CCeeEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837          321 TTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKES------KECRIVWLPIVDGSIDRQQALDKFKNLQKRM  392 (658)
Q Consensus       321 ~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~------~~fEIVwIpivD~s~~W~dde~~F~~~~~~M  392 (658)
                      .+++++.|+||.|+|+|.|. |||+  .|+|.|.++|++++.+      .+||||.|+.+       ++++.+..+.++|
T Consensus        16 ~~~~ls~~kgk~vlL~FwAs-WCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D-------~~~~~~~~f~~~~   87 (146)
T cd03008          16 EREIVARLENRVLLLFFGAV-VSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMD-------QSEQQQESFLKDM   87 (146)
T ss_pred             ccccHHHhCCCEEEEEEECC-CChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECC-------CCHHHHHHHHHHC
Confidence            45567899999999999999 9976  5788999999998643      47999999962       3667799999999


Q ss_pred             C--ceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccc
Q 046837          393 P--WYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAF  449 (658)
Q Consensus       393 P--WyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AF  449 (658)
                      |  |+++|+.+    .....+.+.|++.++|++++|||+|+++..|+++.|..+|.+||
T Consensus        88 ~~~~~~~p~~~----~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~  142 (146)
T cd03008          88 PKKWLFLPFED----EFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF  142 (146)
T ss_pred             CCCceeecccc----hHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence            8  99999976    23446778899999999999999999999999999999999997

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.74  E-value=1.4e-17  Score=152.84  Aligned_cols=125  Identities=26%  Similarity=0.401  Sum_probs=108.9

Q ss_pred             cccCCCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCC-CCeeEEEEecccCCCcchhhHHHHHHhhc
Q 046837          314 LVDGETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKES-KECRIVWLPIVDGSIDRQQALDKFKNLQK  390 (658)
Q Consensus       314 l~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~-~~fEIVwIpivD~s~~W~dde~~F~~~~~  390 (658)
                      |+||+  +.|+++.++||.|+|+|.+. ||++  .+.+.|.++|++++.+ .+++||+|++.       ++.+.++.+.+
T Consensus         3 ~~~~~--~~v~l~~~~Gk~vll~F~at-wC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d-------~~~~~~~~~~~   72 (132)
T cd02964           3 LLDGE--GVVPVSALEGKTVGLYFSAS-WCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRD-------RSEESFNEYFS   72 (132)
T ss_pred             cccCC--ccccHHHhCCCEEEEEEECC-CCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecC-------CCHHHHHHHHh
Confidence            46777  67999999999999999999 9976  4577899999999755 58999999972       25567778888


Q ss_pred             CC-CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccchHHHHHH-hCCccccC
Q 046837          391 RM-PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWI-WGISAFPF  451 (658)
Q Consensus       391 ~M-PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~-wG~~AFPF  451 (658)
                      ++ +|+.+++.+   ......+.+.|++.++|+.+++|++|+++..|+..++.. ||..||||
T Consensus        73 ~~~~~~~~~~~d---~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~  132 (132)
T cd02964          73 EMPPWLAVPFED---EELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW  132 (132)
T ss_pred             cCCCeEeeccCc---HHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence            88 899999954   345678889999999999999999999999999999999 99999998

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.51  E-value=1.3e-13  Score=118.44  Aligned_cols=91  Identities=22%  Similarity=0.410  Sum_probs=78.5

Q ss_pred             CcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC--CceeecCCCCCcH
Q 046837          330 KKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM--PWYSIQDPAMIQP  405 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M--PWyAVpf~~~i~~  405 (658)
                      ||.++|+|.+. ||++  .+++.|.++|++++++.+++||+||.+       ++++.++++.+.+  ||+.+|+.+    
T Consensus         1 gK~~ll~fwa~-~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d-------~~~~~~~~~~~~~~~~~~~~~~~~----   68 (95)
T PF13905_consen    1 GKPVLLYFWAS-WCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD-------EDEEEWKKFLKKNNFPWYNVPFDD----   68 (95)
T ss_dssp             TSEEEEEEE-T-TSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S-------SSHHHHHHHHHTCTTSSEEEETTT----
T ss_pred             CCEEEEEEECC-CCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC-------CCHHHHHHHHHhcCCCceEEeeCc----
Confidence            89999999999 9976  578899999999988899999999982       3777888888888  999999976    


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCce
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRI  432 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv  432 (658)
                      .....+.+.|++.++|++++|||+|+|
T Consensus        69 ~~~~~l~~~~~i~~iP~~~lld~~G~I   95 (95)
T PF13905_consen   69 DNNSELLKKYGINGIPTLVLLDPDGKI   95 (95)
T ss_dssp             HHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred             chHHHHHHHCCCCcCCEEEEECCCCCC
Confidence            457788999999999999999999986

...

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.72  E-value=7.4e-08  Score=88.17  Aligned_cols=108  Identities=19%  Similarity=0.341  Sum_probs=79.5

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCCh---HHHHHHHHHHHHhcCC--CCeeEEEEecccCCCcchhhHHHHHHhhcC-
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQ---EEILFLSNMYKDLKES--KECRIVWLPIVDGSIDRQQALDKFKNLQKR-  391 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~---~~~~~L~~iY~~lk~~--~~fEIVwIpivD~s~~W~dde~~F~~~~~~-  391 (658)
                      .+|+.++++.++||.++|+|.+. ||++   .+++.|.++|++++.+  +++++|+|++++.   . |..+..+++.+. 
T Consensus        10 ~~g~~~~l~~~~gk~~vl~f~~~-~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~---~-d~~~~~~~~~~~~   84 (142)
T cd02968          10 QDGRPVTLSDLKGKPVLVYFGYT-HCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPE---R-DTPEVLKAYAKAF   84 (142)
T ss_pred             CCCCEEchHHhCCCEEEEEEEcC-CCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCC---C-CCHHHHHHHHHHh
Confidence            46678999999999999999999 9975   4677899999999765  4899999998431   1 222333333333 


Q ss_pred             -CCceeecCCCCCcHHHHHHHHHhhccCCc--------------eEEEEECCCCceec
Q 046837          392 -MPWYSIQDPAMIQPAVIKYVKEEWKYSKK--------------AIIVSVDPQGRILN  434 (658)
Q Consensus       392 -MPWyAVpf~~~i~~~~~r~ike~f~~~~i--------------P~LVvL~pqGkv~~  434 (658)
                       .+|..+..++    +..+.+.+.|++...              |..+|+||+|+++.
T Consensus        85 ~~~~~~l~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~  138 (142)
T cd02968          85 GPGWIGLTGTP----EEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVR  138 (142)
T ss_pred             CCCcEEEECCH----HHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEE
Confidence             5788887754    345566777776544              56999999999974

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.67  E-value=2e-07  Score=84.92  Aligned_cols=106  Identities=13%  Similarity=0.140  Sum_probs=74.4

Q ss_pred             CCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh--cCCCc
Q 046837          319 TRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ--KRMPW  394 (658)
Q Consensus       319 ~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~--~~MPW  394 (658)
                      +++.|+++.++||.|+|+|-+. ||++  .+++.|.++|++.+. .+++||.|+..+.+.  +++.+...++.  ..++|
T Consensus        12 ~~~~v~l~~~~gk~vvl~F~a~-~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~--~~~~~~~~~~~~~~~~~~   87 (126)
T cd03012          12 TDKPLSLAQLRGKVVLLDFWTY-CCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAF--ERDLANVKSAVLRYGITY   87 (126)
T ss_pred             CCCccCHHHhCCCEEEEEEECC-CCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCcccc--ccCHHHHHHHHHHcCCCC
Confidence            3567999999999999999999 9965  567889999999974 679999987622111  11233333322  23454


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      ..+--     .  ...+.+.|++.++|..+++|++|+++..
T Consensus        88 p~~~D-----~--~~~~~~~~~v~~~P~~~vid~~G~v~~~  121 (126)
T cd03012          88 PVAND-----N--DYATWRAYGNQYWPALYLIDPTGNVRHV  121 (126)
T ss_pred             CEEEC-----C--chHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence            43322     2  1244566999999999999999999754

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.61  E-value=2.3e-07  Score=82.01  Aligned_cols=102  Identities=14%  Similarity=0.156  Sum_probs=70.6

Q ss_pred             CCCcEEeccccc-CcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837          318 ETRTTVQIHVLK-KKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW  394 (658)
Q Consensus       318 ~~~~kV~Is~L~-gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW  394 (658)
                      .+|+.+.++.++ ||.|.|+|-+. ||++  .+++.|.++|++.+  .++.|+-|+  |      ++.+..+.+.+.++.
T Consensus         8 ~~G~~~~l~~~~~gk~vvl~F~~~-wC~~C~~~~p~l~~~~~~~~--~~~~vi~v~--~------~~~~~~~~~~~~~~~   76 (114)
T cd02967           8 IDGAPVRIGGISPGRPTLLFFLSP-TCPVCKKLLPVIRSIARAEA--DWLDVVLAS--D------GEKAEHQRFLKKHGL   76 (114)
T ss_pred             CCCCEEEcccccCCCeEEEEEECC-CCcchHhHhHHHHHHHHHhc--CCcEEEEEe--C------CCHHHHHHHHHHhCC
Confidence            457789999998 99999999999 9965  56778999888763  457777665  2      223334433333332


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccc
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~n  436 (658)
                      -..|+  ..+.    .+.+.|++.++|..+++|++|+++..+
T Consensus        77 ~~~p~--~~~~----~~~~~~~~~~~P~~~vid~~G~v~~~~  112 (114)
T cd02967          77 EAFPY--VLSA----ELGMAYQVSKLPYAVLLDEAGVIAAKG  112 (114)
T ss_pred             CCCcE--EecH----HHHhhcCCCCcCeEEEECCCCeEEecc
Confidence            22222  1122    255779999999999999999998654

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.60  E-value=2.8e-07  Score=78.60  Aligned_cols=104  Identities=18%  Similarity=0.171  Sum_probs=75.0

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC--
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM--  392 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M--  392 (658)
                      ..+|+.++..+++||.++|+|.+. ||+.|  .++.|.++++++. +.++.++.|++..    .+  .+.-+++.+..  
T Consensus         6 ~~~g~~~~~~~~~~k~~ll~f~~~-~C~~C~~~~~~l~~~~~~~~-~~~~~~~~v~~d~----~~--~~~~~~~~~~~~~   77 (116)
T cd02966           6 DLDGKPVSLSDLKGKVVLVNFWAS-WCPPCRAEMPELEALAKEYK-DDGVEVVGVNVDD----DD--PAAVKAFLKKYGI   77 (116)
T ss_pred             CCCCCEeehHHcCCCEEEEEeecc-cChhHHHHhHHHHHHHHHhC-CCCeEEEEEECCC----CC--HHHHHHHHHHcCC
Confidence            346678999999999999999999 99765  4556888888875 5679999999732    11  33333333333  


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      ||.-+.     +.  .+.+.+.|++.+.|.++++||+|+++..
T Consensus        78 ~~~~~~-----~~--~~~~~~~~~~~~~P~~~l~d~~g~v~~~  113 (116)
T cd02966          78 TFPVLL-----DP--DGELAKAYGVRGLPTTFLIDRDGRIRAR  113 (116)
T ss_pred             CcceEE-----cC--cchHHHhcCcCccceEEEECCCCcEEEE
Confidence            443322     21  3456778999999999999999999753

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.38  E-value=4.3e-06  Score=74.51  Aligned_cols=105  Identities=21%  Similarity=0.330  Sum_probs=74.4

Q ss_pred             cCCCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837          316 DGETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP  393 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP  393 (658)
                      ...+|+++++++|+||.+.|+|-+..||+.  .++..|.+.|++++ ..+..+|.|+..+     .+..++|.+.+. +|
T Consensus        11 ~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~-~~~~~vi~is~d~-----~~~~~~~~~~~~-~~   83 (124)
T PF00578_consen   11 TDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYK-DKGVQVIGISTDD-----PEEIKQFLEEYG-LP   83 (124)
T ss_dssp             ETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHH-TTTEEEEEEESSS-----HHHHHHHHHHHT-CS
T ss_pred             ECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhc-cceEEeeeccccc-----ccchhhhhhhhc-cc
Confidence            455788899999999996666655548965  45677999999987 4589999999832     234455554443 44


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceec
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILN  434 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~  434 (658)
                      |-.+.-++       ..+.+.|+..      ..|..+++||+|+++.
T Consensus        84 ~~~~~D~~-------~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~  123 (124)
T PF00578_consen   84 FPVLSDPD-------GELAKAFGIEDEKDTLALPAVFLIDPDGKIRY  123 (124)
T ss_dssp             SEEEEETT-------SHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred             cccccCcc-------hHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence            43333322       2344458888      9999999999999863

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.37  E-value=1.6e-06  Score=82.07  Aligned_cols=107  Identities=18%  Similarity=0.248  Sum_probs=75.8

Q ss_pred             ccCCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837          315 VDGETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM  392 (658)
Q Consensus       315 ~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M  392 (658)
                      +...+|+.+++++++||.++|+|-+. ||+.|  +++.|.+++++++. .++++|-|+..+       +.+...++.+.+
T Consensus        46 ~~~~~g~~~~l~~~~~k~~~l~f~a~-~C~~C~~~~~~l~~~~~~~~~-~~~~vi~i~~d~-------~~~~~~~~~~~~  116 (173)
T PRK03147         46 LTDLEGKKIELKDLKGKGVFLNFWGT-WCKPCEKEMPYMNELYPKYKE-KGVEIIAVNVDE-------TELAVKNFVNRY  116 (173)
T ss_pred             eecCCCCEEeHHHcCCCEEEEEEECC-cCHHHHHHHHHHHHHHHHhhc-CCeEEEEEEcCC-------CHHHHHHHHHHh
Confidence            34556788999999999999999999 99764  56779999998863 468999998732       333444433333


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      +   ++|+-..|.  .+.+.+.|++.+.|..+++|++|+++..
T Consensus       117 ~---~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~~g~i~~~  154 (173)
T PRK03147        117 G---LTFPVAIDK--GRQVIDAYGVGPLPTTFLIDKDGKVVKV  154 (173)
T ss_pred             C---CCceEEECC--cchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence            2   233211121  2355566999999999999999999843

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.37  E-value=3.9e-06  Score=80.87  Aligned_cols=104  Identities=15%  Similarity=0.225  Sum_probs=75.6

Q ss_pred             CCcEEecccccCcEEEEEEe-cCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh------
Q 046837          319 TRTTVQIHVLKKKHVLLLIS-RPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ------  389 (658)
Q Consensus       319 ~~~kV~Is~L~gK~VlLyfS-a~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~------  389 (658)
                      +++.+++++++||.|+|+|- +. ||+  +.+++.|.+.|++++ +.++.||.|+.++     .+..+.|.+..      
T Consensus        18 ~~~~~~l~~~~Gk~vvl~F~~~~-~c~~C~~~l~~l~~~~~~~~-~~~v~vv~Is~d~-----~~~~~~~~~~~~~~~~~   90 (173)
T cd03015          18 EFKEISLSDYKGKWVVLFFYPLD-FTFVCPTEIIAFSDRYEEFK-KLNAEVLGVSTDS-----HFSHLAWRNTPRKEGGL   90 (173)
T ss_pred             CceEEehHHhCCCEEEEEEECCC-CCCcCHHHHHHHHHHHHHHH-HCCCEEEEEecCC-----HHHHHHHHHhhhhhCCc
Confidence            34789999999999888886 77 984  567888999999996 3679999999732     11334565543      


Q ss_pred             cCCCceeecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceeccc
Q 046837          390 KRMPWYSIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       390 ~~MPWyAVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~n  436 (658)
                      ..+||-.+.-++   .+..+    .|++.      .+|..++|||+|++...+
T Consensus        91 ~~~~f~~l~D~~---~~~~~----~~gv~~~~~~~~~p~~~lID~~G~I~~~~  136 (173)
T cd03015          91 GKINFPLLADPK---KKISR----DYGVLDEEEGVALRGTFIIDPEGIIRHIT  136 (173)
T ss_pred             cCcceeEEECCc---hhHHH----HhCCccccCCceeeEEEEECCCCeEEEEE
Confidence            357776665443   23333    47765      678999999999998766

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.33  E-value=2.7e-06  Score=81.46  Aligned_cols=110  Identities=13%  Similarity=0.141  Sum_probs=77.4

Q ss_pred             CCCCcEEecccc-cCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc--C
Q 046837          317 GETRTTVQIHVL-KKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK--R  391 (658)
Q Consensus       317 g~~~~kV~Is~L-~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~--~  391 (658)
                      ..+|..|.++.+ +||.|+|+|=+. |||.  .+++.|.++|++.+ +.++++|-|++++....+.|+.+..+.+.+  .
T Consensus        11 ~~~g~~v~l~~~~~~k~~ll~f~~t-~Cp~c~~~~~~l~~l~~~~~-~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~   88 (171)
T cd02969          11 DTDGKTYSLADFADGKALVVMFICN-HCPYVKAIEDRLNRLAKEYG-AKGVAVVAINSNDIEAYPEDSPENMKAKAKEHG   88 (171)
T ss_pred             CCCCCEEeHHHHhCCCEEEEEEECC-CCccHHHHHHHHHHHHHHHh-hCCeEEEEEecCccccccccCHHHHHHHHHHCC
Confidence            345668999998 999999999999 9976  45677999999885 357999999985322222233444444333  3


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      .||-.+-     |..  +.+.+.|++.+.|..+++||+|+++-.
T Consensus        89 ~~~~~l~-----D~~--~~~~~~~~v~~~P~~~lid~~G~v~~~  125 (171)
T cd02969          89 YPFPYLL-----DET--QEVAKAYGAACTPDFFLFDPDGKLVYR  125 (171)
T ss_pred             CCceEEE-----CCc--hHHHHHcCCCcCCcEEEECCCCeEEEe
Confidence            4433222     222  245667999999999999999999843

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=98.28  E-value=4.3e-06  Score=76.17  Aligned_cols=105  Identities=11%  Similarity=0.190  Sum_probs=75.7

Q ss_pred             CCCCcEEecccccCcEEEEEEe-cCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837          317 GETRTTVQIHVLKKKHVLLLIS-RPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP  393 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfS-a~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP  393 (658)
                      +.+|+.+++++++||.++|+|- +. ||+  +.+++.|.+.|++++ ..+++||.|+..+     .+...+|.+-....|
T Consensus         9 ~~~g~~~~l~~~~gk~~ll~f~~~~-~c~~C~~~~~~l~~~~~~~~-~~~~~~i~is~d~-----~~~~~~~~~~~~~~~   81 (140)
T cd02971           9 ATDGGEVSLSDFKGKWVVLFFYPKD-FTPVCTTELCAFRDLAEEFA-KGGAEVLGVSVDS-----PFSHKAWAEKEGGLN   81 (140)
T ss_pred             cCCCcEEehHHhCCCeEEEEEeCCC-CCCcCHHHHHHHHHHHHHHH-HCCCEEEEEeCCC-----HHHHHHHHhcccCCC
Confidence            3467789999999998888776 67 885  566788999999995 4579999999732     124455555443566


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccCCce---------EEEEECCCCceecc
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYSKKA---------IIVSVDPQGRILNQ  435 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~~iP---------~LVvL~pqGkv~~~  435 (658)
                      |-.+--+     ..  .+.+.|++...|         ..+++|++|+++..
T Consensus        82 ~~~l~D~-----~~--~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~  125 (140)
T cd02971          82 FPLLSDP-----DG--EFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYV  125 (140)
T ss_pred             ceEEECC-----Ch--HHHHHcCCccccccccCceeEEEEEECCCCcEEEE
Confidence            6655322     22  455668877665         89999999999865

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.26  E-value=4.2e-06  Score=76.39  Aligned_cols=102  Identities=19%  Similarity=0.309  Sum_probs=73.2

Q ss_pred             CCcEEecccccCcEEEEEEec-CCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCce
Q 046837          319 TRTTVQIHVLKKKHVLLLISR-PDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWY  395 (658)
Q Consensus       319 ~~~kV~Is~L~gK~VlLyfSa-~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWy  395 (658)
                      +|+.+.+++++||.++|+|-. . |||  +.+++.|.+.|++++ ..+++||.|+..+     .+.-.+|-+.+ .++|.
T Consensus        12 ~g~~~~l~~~~gk~~ll~f~~~~-~cp~C~~~~~~l~~~~~~~~-~~~~~vv~is~d~-----~~~~~~~~~~~-~~~~~   83 (140)
T cd03017          12 DGETVSLSDLRGKPVVLYFYPKD-DTPGCTKEACDFRDLYEEFK-ALGAVVIGVSPDS-----VESHAKFAEKY-GLPFP   83 (140)
T ss_pred             CCCEEeHHHhCCCcEEEEEeCCC-CCCchHHHHHHHHHHHHHHH-HCCCEEEEEcCCC-----HHHHHHHHHHh-CCCce
Confidence            577899999999998888874 5 875  456778999999986 3579999999731     12334454432 45665


Q ss_pred             eecCCCCCcHHHHHHHHHhhccCCc---------eEEEEECCCCceecc
Q 046837          396 SIQDPAMIQPAVIKYVKEEWKYSKK---------AIIVSVDPQGRILNQ  435 (658)
Q Consensus       396 AVpf~~~i~~~~~r~ike~f~~~~i---------P~LVvL~pqGkv~~~  435 (658)
                      .+--     ..  +.+.+.|++...         |..+++|++|+++..
T Consensus        84 ~l~D-----~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~  125 (140)
T cd03017          84 LLSD-----PD--GKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV  125 (140)
T ss_pred             EEEC-----Cc--cHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence            4432     22  245667998887         999999999998754

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.24  E-value=4.6e-06  Score=94.35  Aligned_cols=107  Identities=9%  Similarity=0.027  Sum_probs=80.0

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcch-h-hHHHHHHhhcCC
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQ-Q-ALDKFKNLQKRM  392 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~-d-de~~F~~~~~~M  392 (658)
                      ..+|+++.++  +||.|+|.|-|. ||++  .+++.|.++|++.+ ..+++||-|...    .++ + +.+.|.++.+.+
T Consensus        45 D~dG~~v~ls--kGKpVvV~FWAT-WCppCk~emP~L~eL~~e~k-~~~v~VI~Vs~~----~~~~e~~~~~~~~~~~~~  116 (521)
T PRK14018         45 DNRPASVYLK--KDKPTLIKFWAS-WCPLCLSELGETEKWAQDAK-FSSANLITVASP----GFLHEKKDGDFQKWYAGL  116 (521)
T ss_pred             cCCCceeecc--CCCEEEEEEEcC-CCHHHHHHHHHHHHHHHHhc-cCCeEEEEEecc----cccccccHHHHHHHHHhC
Confidence            3455567776  899999999999 9976  56889999999876 356999988862    222 2 567788888877


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      .|..+|.--  |.  -..+.+.|+++++|++++||++|+++..
T Consensus       117 ~y~~~pV~~--D~--~~~lak~fgV~giPTt~IIDkdGkIV~~  155 (521)
T PRK14018        117 DYPKLPVLT--DN--GGTLAQSLNISVYPSWAIIGKDGDVQRI  155 (521)
T ss_pred             CCcccceec--cc--cHHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence            765444321  22  2345667999999999999999999854

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.23  E-value=7.4e-06  Score=74.19  Aligned_cols=99  Identities=15%  Similarity=0.023  Sum_probs=69.3

Q ss_pred             cEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeec
Q 046837          321 TTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQ  398 (658)
Q Consensus       321 ~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVp  398 (658)
                      ..++.++++||.|+|+|-+. ||++|  +.+.|.+++++.    +++||-|+..|.    .++-++|-.. ...||..+-
T Consensus        16 ~~~~~~~~~gk~vvv~F~a~-~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~----~~~~~~~~~~-~~~~~~~~~   85 (127)
T cd03010          16 KTLTSADLKGKPYLLNVWAS-WCAPCREEHPVLMALARQG----RVPIYGINYKDN----PENALAWLAR-HGNPYAAVG   85 (127)
T ss_pred             ccccHHHcCCCEEEEEEEcC-cCHHHHHHHHHHHHHHHhc----CcEEEEEECCCC----HHHHHHHHHh-cCCCCceEE
Confidence            56888999999999999999 99764  566787776553    488998886331    1122333322 345776655


Q ss_pred             CCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          399 DPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       399 f~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      ...    .  ..+...|++.++|..++||++|+++..
T Consensus        86 ~D~----~--~~~~~~~~v~~~P~~~~ld~~G~v~~~  116 (127)
T cd03010          86 FDP----D--GRVGIDLGVYGVPETFLIDGDGIIRYK  116 (127)
T ss_pred             ECC----c--chHHHhcCCCCCCeEEEECCCceEEEE
Confidence            422    1  235566999999999999999998743

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.14  E-value=8.7e-06  Score=76.40  Aligned_cols=105  Identities=14%  Similarity=0.202  Sum_probs=71.6

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW  394 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW  394 (658)
                      ..+|+.+++++++||.++|+|=+.+|||  +.+++.|.+.|++++. .++++|-|++++     .+.-.+|-+-. ..||
T Consensus        17 ~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~v~vi~Is~d~-----~~~~~~~~~~~-~~~~   89 (154)
T PRK09437         17 DQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK-AGVVVLGISTDK-----PEKLSRFAEKE-LLNF   89 (154)
T ss_pred             CCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCC-----HHHHHHHHHHh-CCCC
Confidence            3456789999999999999997763564  4567789999999863 569999999732     12444454333 4566


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccCCc------------eEEEEECCCCceecc
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYSKK------------AIIVSVDPQGRILNQ  435 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~~i------------P~LVvL~pqGkv~~~  435 (658)
                      -.+.-++       +.+.+.|++...            |..++|||+|+++..
T Consensus        90 ~~l~D~~-------~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~  135 (154)
T PRK09437         90 TLLSDED-------HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV  135 (154)
T ss_pred             eEEECCC-------chHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence            6553222       234445776543            778999999999754

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.13  E-value=7.8e-06  Score=73.18  Aligned_cols=93  Identities=22%  Similarity=0.305  Sum_probs=66.0

Q ss_pred             CCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchh-hHHHHHHhhcCCCce
Q 046837          319 TRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQ-ALDKFKNLQKRMPWY  395 (658)
Q Consensus       319 ~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~d-de~~F~~~~~~MPWy  395 (658)
                      +|+.+..+.++||.++|+|-+. ||+.|  +.+.|.++|++      ++++-|+.++.    +. .-.+|-+.+ .+||.
T Consensus         9 ~g~~~~~~~~~~k~~vl~F~~~-~C~~C~~~~~~l~~~~~~------~~~i~i~~~~~----~~~~~~~~~~~~-~~~~~   76 (123)
T cd03011           9 DGEQFDLESLSGKPVLVYFWAT-WCPVCRFTSPTVNQLAAD------YPVVSVALRSG----DDGAVARFMQKK-GYGFP   76 (123)
T ss_pred             CCCEeeHHHhCCCEEEEEEECC-cChhhhhhChHHHHHHhh------CCEEEEEccCC----CHHHHHHHHHHc-CCCcc
Confidence            4578999999999999999999 99764  46779988876      67888886321    11 223343332 25555


Q ss_pred             eecCCCCCcHHHHHHHHHhhccCCceEEEEECCCC
Q 046837          396 SIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQG  430 (658)
Q Consensus       396 AVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqG  430 (658)
                      .+.-++       ..+.+.|++.+.|+++++|++|
T Consensus        77 ~~~d~~-------~~~~~~~~i~~~P~~~vid~~g  104 (123)
T cd03011          77 VINDPD-------GVISARWGVSVTPAIVIVDPGG  104 (123)
T ss_pred             EEECCC-------cHHHHhCCCCcccEEEEEcCCC
Confidence            443221       2456679999999999999999

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.13  E-value=2.4e-05  Score=72.37  Aligned_cols=106  Identities=14%  Similarity=0.197  Sum_probs=74.7

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW  394 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW  394 (658)
                      ..+|+.++++.++||.|+|.|-+.-|||+|  +++.|.++|++.+ +.++++|.|...+     +....+|-+- ...+|
T Consensus        15 ~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~-~~~v~~v~v~~~~-----~~~~~~~~~~-~~~~~   87 (146)
T PF08534_consen   15 DLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYK-DKGVDVVGVSSDD-----DPPVREFLKK-YGINF   87 (146)
T ss_dssp             ETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHH-TTTCEEEEEEESS-----SHHHHHHHHH-TTTTS
T ss_pred             cCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhc-cCceEEEEecccC-----CHHHHHHHHh-hCCCc
Confidence            368889999999999955555443399764  5778999988865 4579999999853     1244445433 45555


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccC---------CceEEEEECCCCceeccc
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYS---------KKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~---------~iP~LVvL~pqGkv~~~n  436 (658)
                      ..+--++       ..+.+.|++.         +.|..+++|++|+|+...
T Consensus        88 ~~~~D~~-------~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~  131 (146)
T PF08534_consen   88 PVLSDPD-------GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH  131 (146)
T ss_dssp             EEEEETT-------SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred             eEEechH-------HHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence            5544332       2344558887         999999999999998654

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.13  E-value=1.2e-05  Score=74.26  Aligned_cols=106  Identities=11%  Similarity=0.129  Sum_probs=71.5

Q ss_pred             CCCCcEEecccccC-cEEEEEE-ecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837          317 GETRTTVQIHVLKK-KHVLLLI-SRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM  392 (658)
Q Consensus       317 g~~~~kV~Is~L~g-K~VlLyf-Sa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M  392 (658)
                      ..+|+.+++++++| |.+.|+| .+. ||+.  .+++.|.++|++++ +.++.+|.|+..+     .+..++|-+-+ ..
T Consensus        14 ~~~g~~v~l~~~~g~k~~vl~f~~~~-~c~~C~~~~~~l~~~~~~~~-~~~v~vi~vs~d~-----~~~~~~~~~~~-~~   85 (149)
T cd03018          14 DQNGQEVRLSEFRGRKPVVLVFFPLA-FTPVCTKELCALRDSLELFE-AAGAEVLGISVDS-----PFSLRAWAEEN-GL   85 (149)
T ss_pred             CCCCCEEeHHHHcCCCeEEEEEeCCC-CCccHHHHHHHHHHHHHHHH-hCCCEEEEecCCC-----HHHHHHHHHhc-CC
Confidence            34678899999999 8766655 588 9965  56778999999986 3578999999632     12444554432 35


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccC----Cce--EEEEECCCCceecc
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYS----KKA--IIVSVDPQGRILNQ  435 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~----~iP--~LVvL~pqGkv~~~  435 (658)
                      ||..+-     |....+.+.+.|++.    ++|  ..+++|++|+++-.
T Consensus        86 ~~~~~~-----D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~  129 (149)
T cd03018          86 TFPLLS-----DFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYA  129 (149)
T ss_pred             CceEec-----CCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEE
Confidence            554442     211123455567776    433  89999999998765

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PLN02412 probable glutathione peroxidase

Probab=98.06  E-value=3.7e-05  Score=74.29  Aligned_cols=117  Identities=15%  Similarity=0.211  Sum_probs=80.1

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCC-Ccc-h-h-hHHHH-HHhh
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGS-IDR-Q-Q-ALDKF-KNLQ  389 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s-~~W-~-d-de~~F-~~~~  389 (658)
                      ..+|+++.++.++||.|+|+|-+. ||+++  +.+.|.++|++.+. .+++||=||..+.. .+. + + -.+.| +.+.
T Consensus        16 d~~G~~v~l~~~~gk~vlv~f~a~-~C~~c~~e~~~l~~l~~~~~~-~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~   93 (167)
T PLN02412         16 DIGGNDVSLNQYKGKVLLIVNVAS-KCGLTDSNYKELNVLYEKYKE-QGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFK   93 (167)
T ss_pred             CCCCCEEeHHHhCCCEEEEEEeCC-CCCChHHHHHHHHHHHHHHhh-CCcEEEEecccccccCCCCCHHHHHHHHHHccC
Confidence            356778999999999999999999 99764  67889999999974 46999999974210 011 1 1 23445 5555


Q ss_pred             cCCCceee--cCCCCCcHHHHHHHHHh----hc--cCCceEEEEECCCCceeccc
Q 046837          390 KRMPWYSI--QDPAMIQPAVIKYVKEE----WK--YSKKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       390 ~~MPWyAV--pf~~~i~~~~~r~ike~----f~--~~~iP~LVvL~pqGkv~~~n  436 (658)
                      -+.|+++-  +-... .....++++..    +.  +...|+-.++|++|+++..-
T Consensus        94 ~~fpvl~~~d~~g~~-~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~  147 (167)
T PLN02412         94 AEFPIFDKVDVNGKN-TAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY  147 (167)
T ss_pred             CCCceEeEEeeCCCC-CCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence            66787752  22111 22345555542    22  56679999999999998654

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=98.03  E-value=2.5e-05  Score=76.49  Aligned_cols=99  Identities=17%  Similarity=0.086  Sum_probs=67.7

Q ss_pred             CcEEecccc-cCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCcee
Q 046837          320 RTTVQIHVL-KKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYS  396 (658)
Q Consensus       320 ~~kV~Is~L-~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyA  396 (658)
                      |+.+..+.+ +||.|+|+|-+. ||++  .+.+.|.++++     .+++||-|+..|.    .++-.+|-+- ..+||..
T Consensus        57 g~~~~~~~~~~gk~vvv~Fwat-wC~~C~~e~p~l~~l~~-----~~~~vi~v~~~~~----~~~~~~~~~~-~~~~~~~  125 (185)
T PRK15412         57 GQFYQADVLTQGKPVLLNVWAT-WCPTCRAEHQYLNQLSA-----QGIRVVGMNYKDD----RQKAISWLKE-LGNPYAL  125 (185)
T ss_pred             CccccHHHhcCCCEEEEEEECC-CCHHHHHHHHHHHHHHH-----cCCEEEEEECCCC----HHHHHHHHHH-cCCCCce
Confidence            455666666 799999999999 9976  56777877754     3689999986330    0133344332 2467765


Q ss_pred             ecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          397 IQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       397 Vpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      +.+..    .  ..+.+.|++.++|..+++|++|++...
T Consensus       126 ~~~D~----~--~~~~~~~gv~~~P~t~vid~~G~i~~~  158 (185)
T PRK15412        126 SLFDG----D--GMLGLDLGVYGAPETFLIDGNGIIRYR  158 (185)
T ss_pred             EEEcC----C--ccHHHhcCCCcCCeEEEECCCceEEEE
Confidence            44422    1  124456999999999999999998754

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.00  E-value=4.3e-05  Score=75.26  Aligned_cols=97  Identities=14%  Similarity=0.175  Sum_probs=67.9

Q ss_pred             CCCcEEecc--cccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHH-hhcCC
Q 046837          318 ETRTTVQIH--VLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKN-LQKRM  392 (658)
Q Consensus       318 ~~~~kV~Is--~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~-~~~~M  392 (658)
                      .+|+.+.++  .++||.|.|+|.+. |||+  .+.+.+.++|++.    ++.+++|+. |   + .++.++|-. +.-+.
T Consensus        60 ~~G~~v~l~~~~~~gk~vvl~F~at-wCp~C~~~lp~l~~~~~~~----~~~vv~Is~-~---~-~~~~~~~~~~~~~~~  129 (189)
T TIGR02661        60 FDGEPVRIGGSIAPGRPTLLMFTAP-SCPVCDKLFPIIKSIARAE----ETDVVMISD-G---T-PAEHRRFLKDHELGG  129 (189)
T ss_pred             CCCCEEeccchhcCCCEEEEEEECC-CChhHHHHHHHHHHHHHhc----CCcEEEEeC-C---C-HHHHHHHHHhcCCCc
Confidence            456779984  57999999999999 9975  4577888888653    578999984 2   1 123344433 32234


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                      |.|.  .    +    ..+.+.|++.++|..+++|++|++..
T Consensus       130 ~~~~--~----~----~~i~~~y~v~~~P~~~lID~~G~I~~  161 (189)
T TIGR02661       130 ERYV--V----S----AEIGMAFQVGKIPYGVLLDQDGKIRA  161 (189)
T ss_pred             ceee--c----h----hHHHHhccCCccceEEEECCCCeEEE
Confidence            4443  1    1    23445699999999999999999985

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=97.98  E-value=3.7e-06  Score=81.69  Aligned_cols=50  Identities=20%  Similarity=0.399  Sum_probs=41.5

Q ss_pred             cCCcEEEEEccCCchHH---HHHHHHHHHHHhhc---CCceeEEEeeccChhhHHHHh
Q 046837          483 KEERFICLYGGNDEAWI---RKFRNSAKDVASKA---QINWGMAYVGKKNAKKRLEEI  534 (658)
Q Consensus       483 ~egK~I~LYgg~d~~Wi---r~FT~~~~~i~~~~---~~~~E~v~Vgkdn~~e~v~~~  534 (658)
                      .+||.|+||||+  +||   |+||+.+++++++.   +.+||+||||+|...+....-
T Consensus        31 l~gKvV~lyFsA--~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y   86 (157)
T KOG2501|consen   31 LQGKVVGLYFSA--HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEY   86 (157)
T ss_pred             hCCcEEEEEEEE--EECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHH
Confidence            499999999999  777   99999999998853   557999999999766554433

>PTZ00256 glutathione peroxidase; Provisional

Probab=97.98  E-value=8.6e-05  Score=72.73  Aligned_cols=116  Identities=13%  Similarity=0.188  Sum_probs=73.9

Q ss_pred             CCCCcEEecccccCcEE-EEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEeccc--CCCcchh-hHHHHHHhhc
Q 046837          317 GETRTTVQIHVLKKKHV-LLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVD--GSIDRQQ-ALDKFKNLQK  390 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~V-lLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD--~s~~W~d-de~~F~~~~~  390 (658)
                      ..+|+.|++++++||.| ++++-|. |||+  .+.+.|.++|++.+. .+++||-||..+  ...+++. +-.+|-.-..
T Consensus        27 d~~G~~vsLs~~~Gk~vvlv~n~at-wCp~C~~e~p~l~~l~~~~~~-~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~  104 (183)
T PTZ00256         27 DIDGQLVQLSKFKGKKAIIVVNVAC-KCGLTSDHYTQLVELYKQYKS-QGLEILAFPCNQFMEQEPWDEPEIKEYVQKKF  104 (183)
T ss_pred             cCCCCEEeHHHhCCCcEEEEEEECC-CCCchHHHHHHHHHHHHHHhh-CCcEEEEEecccccccCCCCHHHHHHHHHHhc
Confidence            45778899999999965 4455788 9975  578899999999863 469999999631  1112322 3334421111


Q ss_pred             CCCceee----cCCCCCcHHHHHHHHHhh--------ccCCceE---EEEECCCCceecc
Q 046837          391 RMPWYSI----QDPAMIQPAVIKYVKEEW--------KYSKKAI---IVSVDPQGRILNQ  435 (658)
Q Consensus       391 ~MPWyAV----pf~~~i~~~~~r~ike~f--------~~~~iP~---LVvL~pqGkv~~~  435 (658)
                      ..++..+    +-+. ...+..+++++..        .+.++|.   .+++|++|+++..
T Consensus       105 ~~~fpv~~d~d~~g~-~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~  163 (183)
T PTZ00256        105 NVDFPLFQKIEVNGE-NTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKY  163 (183)
T ss_pred             CCCCCCceEEecCCC-CCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEE
Confidence            3332222    1111 1134666777765        4668995   6999999999864

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=97.98  E-value=6.9e-05  Score=70.74  Aligned_cols=111  Identities=12%  Similarity=0.246  Sum_probs=72.1

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEec--ccCCCcch--hhHHHHHHhhcC
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPI--VDGSIDRQ--QALDKFKNLQKR  391 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpi--vD~s~~W~--dde~~F~~~~~~  391 (658)
                      .+|+.+.+++++||.|+|+|-+. |||+  .+.+.|.++|++.+ ..+++||-||.  +..+ +-+  +.-.+|-+-...
T Consensus        10 ~~G~~~~l~~~~Gk~vvv~~~as-~C~~c~~~~~~l~~l~~~~~-~~~~~v~~i~~~~~~~~-~~d~~~~~~~f~~~~~~   86 (153)
T TIGR02540        10 ARGRTVSLEKYRGKVSLVVNVAS-ECGFTDQNYRALQELHRELG-PSHFNVLAFPCNQFGES-EPDSSKEIESFARRNYG   86 (153)
T ss_pred             CCCCEecHHHhCCCEEEEEEeCC-CCCchhhhHHHHHHHHHHHh-hCCeEEEEEeccccccC-CCCCHHHHHHHHHHhcC
Confidence            46778999999999999999999 9976  57888999999997 34699999985  1100 001  133445432123


Q ss_pred             CCceeec-----CCCCCcHHHHHHHHHhhccCCceE----EEEECCCCceecc
Q 046837          392 MPWYSIQ-----DPAMIQPAVIKYVKEEWKYSKKAI----IVSVDPQGRILNQ  435 (658)
Q Consensus       392 MPWyAVp-----f~~~i~~~~~r~ike~f~~~~iP~----LVvL~pqGkv~~~  435 (658)
                      .++..+.     -++  -....+++.+  +..+.|.    ..++|++|+++..
T Consensus        87 ~~fp~~~d~~~~~~~--~~~~~~~~~~--~~~~~p~~~~~tflID~~G~v~~~  135 (153)
T TIGR02540        87 VTFPMFSKIKILGSE--AEPAFRFLVD--SSKKEPRWNFWKYLVNPEGQVVKF  135 (153)
T ss_pred             CCCCccceEecCCCC--CCcHHHHHHh--cCCCCCCCccEEEEEcCCCcEEEE
Confidence            4433221     111  0123455443  3456897    9999999999753

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=97.96  E-value=7e-05  Score=77.19  Aligned_cols=117  Identities=15%  Similarity=0.219  Sum_probs=75.0

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcc--h-hhHHHHH--Hhh
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDR--Q-QALDKFK--NLQ  389 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W--~-dde~~F~--~~~  389 (658)
                      ..+|+.|.+++++||.|+|.|-+. ||++  .+.+.|.++|++.+. .+++||-|+..+....-  + ++-.+|-  .+.
T Consensus        86 d~~G~~vsLsd~kGK~vvl~FwAs-wCp~c~~e~p~L~~L~~~~~~-~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g  163 (236)
T PLN02399         86 DIDGKDVALSKFKGKVLLIVNVAS-KCGLTSSNYSELSHLYEKYKT-QGFEILAFPCNQFGGQEPGSNPEIKQFACTRFK  163 (236)
T ss_pred             CCCCCEEeHHHhCCCeEEEEEEcC-CCcchHHHHHHHHHHHHHHhc-CCcEEEEEecccccccCCCCHHHHHHHHHHhcC
Confidence            356788999999999999999999 9976  478899999999864 46999999974210000  1 1334452  233


Q ss_pred             cCCCceeecCCC-CCcHHHHHHHHHhhc------cCCceEEEEECCCCceecc
Q 046837          390 KRMPWYSIQDPA-MIQPAVIKYVKEEWK------YSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       390 ~~MPWyAVpf~~-~i~~~~~r~ike~f~------~~~iP~LVvL~pqGkv~~~  435 (658)
                      -..|-++=.-.+ ..-.+..++++..+.      ++..|+-+++|++|+++..
T Consensus       164 ~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~  216 (236)
T PLN02399        164 AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVER  216 (236)
T ss_pred             CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEE
Confidence            333432100000 001123455544332      3567999999999999864

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=97.93  E-value=2.9e-05  Score=73.33  Aligned_cols=52  Identities=15%  Similarity=0.211  Sum_probs=44.8

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCC-hHHHHHHHHHHHHhcCCCCeeEEEEec
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDIS-QEEILFLSNMYKDLKESKECRIVWLPI  371 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~-~~~~~~L~~iY~~lk~~~~fEIVwIpi  371 (658)
                      .+|+.++++.++||.|+|+|=+. ||| ..+++.|.++|++.+. .+++||-|++
T Consensus        10 ~~G~~v~l~~~~Gk~vvl~fwat-wC~C~~e~p~l~~l~~~~~~-~~~~vv~v~~   62 (152)
T cd00340          10 IDGEPVSLSKYKGKVLLIVNVAS-KCGFTPQYEGLEALYEKYKD-RGLVVLGFPC   62 (152)
T ss_pred             CCCCEEeHHHhCCCEEEEEEEcC-CCCchHHHHHHHHHHHHhcC-CCEEEEEecc
Confidence            46778999999999999999999 996 5577889999999863 4699999986

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=97.93  E-value=4.1e-05  Score=74.05  Aligned_cols=97  Identities=21%  Similarity=0.108  Sum_probs=65.4

Q ss_pred             EEecccc-cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeec
Q 046837          322 TVQIHVL-KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQ  398 (658)
Q Consensus       322 kV~Is~L-~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVp  398 (658)
                      .+..+.+ +||.|+|+|.+. ||++|  +.+.|.++++     .+++||.|+..|.    .++..+|-+- ..+||..+.
T Consensus        54 ~~~~~~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~-----~~~~vi~V~~~~~----~~~~~~~~~~-~~~~f~~v~  122 (173)
T TIGR00385        54 AYTPEAFIQGKPVLLNVWAS-WCPPCRAEHPYLNELAK-----DGLPIVGVDYKDQ----SQNALKFLKE-LGNPYQAIL  122 (173)
T ss_pred             ccCHHHhcCCCEEEEEEECC-cCHHHHHHHHHHHHHHH-----cCCEEEEEECCCC----hHHHHHHHHH-cCCCCceEE
Confidence            4555565 799999999999 99764  5666776654     2599999986321    0122344322 246776554


Q ss_pred             CCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          399 DPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       399 f~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      +..    .  ..+.+.|++.+.|..+++|++|+++..
T Consensus       123 ~D~----~--~~~~~~~~v~~~P~~~~id~~G~i~~~  153 (173)
T TIGR00385       123 IDP----N--GKLGLDLGVYGAPETFLVDGNGVILYR  153 (173)
T ss_pred             ECC----C--CchHHhcCCeeCCeEEEEcCCceEEEE
Confidence            422    1  234556999999999999999998754

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=97.92  E-value=6e-05  Score=74.89  Aligned_cols=110  Identities=12%  Similarity=0.127  Sum_probs=76.6

Q ss_pred             cccCCCCcEEecccccCcEEEEEEe-cCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc
Q 046837          314 LVDGETRTTVQIHVLKKKHVLLLIS-RPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK  390 (658)
Q Consensus       314 l~~g~~~~kV~Is~L~gK~VlLyfS-a~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~  390 (658)
                      +++| ....+.+++++||.|.|+|= +. |||  +.|+..|.+.|++++ +.+++||-||.++     .+..+.|-+-..
T Consensus        16 ~~~g-~~~~v~L~d~~Gk~vvL~F~P~~-~~p~C~~el~~l~~~~~~f~-~~g~~vigIS~D~-----~~~~~a~~~~~~   87 (187)
T PRK10382         16 FKNG-EFIEVTEKDTEGRWSVFFFYPAD-FTFVCPTELGDVADHYEELQ-KLGVDVYSVSTDT-----HFTHKAWHSSSE   87 (187)
T ss_pred             EeCC-cceEEEHHHhCCCeEEEEEECCC-CCCcCHHHHHHHHHHHHHHH-hCCCEEEEEeCCC-----HHHHHHHHHhhc
Confidence            4544 45678889999999888877 77 884  567888999999986 4569999999732     125666764332


Q ss_pred             CCCceeecCCCCCcHHHHHHHHHhhcc----CCc--eEEEEECCCCceecc
Q 046837          391 RMPWYSIQDPAMIQPAVIKYVKEEWKY----SKK--AIIVSVDPQGRILNQ  435 (658)
Q Consensus       391 ~MPWyAVpf~~~i~~~~~r~ike~f~~----~~i--P~LVvL~pqGkv~~~  435 (658)
                      .+  ..+|||=+.|.  -+.+.+.|++    .+.  |..+|+||+|++...
T Consensus        88 ~~--~~l~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~  134 (187)
T PRK10382         88 TI--AKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDPQGIIQAI  134 (187)
T ss_pred             cc--cCCceeEEEcC--chHHHHHcCCCcccCCceeeEEEEECCCCEEEEE
Confidence            22  23444433332  3456666887    466  999999999998654

>TIGR03137 AhpC peroxiredoxin

Probab=97.91  E-value=4.7e-05  Score=74.91  Aligned_cols=101  Identities=13%  Similarity=0.159  Sum_probs=70.7

Q ss_pred             EEecccccCcEEEEEEe-cCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh---cCCCce
Q 046837          322 TVQIHVLKKKHVLLLIS-RPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ---KRMPWY  395 (658)
Q Consensus       322 kV~Is~L~gK~VlLyfS-a~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~---~~MPWy  395 (658)
                      .++.++++||.|+|+|= +. ||+  +.+++.|.+.|++++ ..+++||.||.++     .+..+.|....   ..+|+.
T Consensus        23 ~~sl~d~~Gk~vvl~F~p~~-~cp~C~~el~~l~~~~~~~~-~~gv~vi~VS~D~-----~~~~~~~~~~~~~~~~l~fp   95 (187)
T TIGR03137        23 EVTDEDVKGKWSVFFFYPAD-FTFVCPTELEDLADKYAELK-KLGVEVYSVSTDT-----HFVHKAWHDTSEAIGKITYP   95 (187)
T ss_pred             EecHHHHCCCEEEEEEECCC-cCCcCHHHHHHHHHHHHHHH-hcCCcEEEEeCCC-----HHHHHHHHhhhhhccCccee
Confidence            57888999999999997 77 985  567888999999996 4479999999732     12445554322   345543


Q ss_pred             eecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceeccc
Q 046837          396 SIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       396 AVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~n  436 (658)
                      .+-     |.  ...+.+.|++.      ..|..+++|++|++....
T Consensus        96 lls-----D~--~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~  135 (187)
T TIGR03137        96 MLG-----DP--TGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE  135 (187)
T ss_pred             EEE-----CC--ccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence            332     22  23445557775      469999999999997653

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=97.88  E-value=6.8e-05  Score=69.27  Aligned_cols=105  Identities=6%  Similarity=0.015  Sum_probs=69.1

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCC-CC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDD-IS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP  393 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~-~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP  393 (658)
                      ..+|..+++++++||.|.|+|=+. | ||  ..+++.|.+.|++.   .+++||-|+.++     .+...+|.+-.   .
T Consensus        13 ~~~g~~~~l~~~~gk~vvl~f~~~-~~c~~C~~e~~~l~~~~~~~---~~~~vi~Is~d~-----~~~~~~~~~~~---~   80 (143)
T cd03014          13 TSDLSEVSLADFAGKVKVISVFPS-IDTPVCATQTKRFNKEAAKL---DNTVVLTISADL-----PFAQKRWCGAE---G   80 (143)
T ss_pred             CCCCcEEeHHHhCCCeEEEEEEcC-CCCCcCHHHHHHHHHHHHhc---CCCEEEEEECCC-----HHHHHHHHHhc---C
Confidence            346678999999999999999888 6 54  56788899999996   368999998622     11344554433   2


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccCC------ceEEEEECCCCceeccc
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYSK------KAIIVSVDPQGRILNQN  436 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~~------iP~LVvL~pqGkv~~~n  436 (658)
                      ...+|.-+  |.. .+.+.+.|++..      .|...++|++|+++...
T Consensus        81 ~~~~~~l~--D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~  126 (143)
T cd03014          81 VDNVTTLS--DFR-DHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE  126 (143)
T ss_pred             CCCceEee--cCc-ccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence            21122111  111 123344466643      79999999999997654

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.83  E-value=8.7e-05  Score=90.48  Aligned_cols=103  Identities=19%  Similarity=0.182  Sum_probs=74.3

Q ss_pred             CCcEEec-ccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcch-h-hHH---HHHHhhc
Q 046837          319 TRTTVQI-HVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQ-Q-ALD---KFKNLQK  390 (658)
Q Consensus       319 ~~~kV~I-s~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~-d-de~---~F~~~~~  390 (658)
                      +|..+.+ ++++||.|+|.|.|. ||++  .+.|.|.++|++.+ +.+|+||-|+.++    .+ + +.+   +|- ...
T Consensus       408 ~g~~~~l~~~lkGK~vll~FWAs-WC~pC~~e~P~L~~l~~~y~-~~~~~vvgV~~~~----~D~~~~~~~~~~~~-~~~  480 (1057)
T PLN02919        408 NTAPLQFRRDLKGKVVILDFWTY-CCINCMHVLPDLEFLEKKYK-DQPFTVVGVHSAK----FDNEKDLEAIRNAV-LRY  480 (1057)
T ss_pred             CCccccchhhcCCCEEEEEEECC-cChhHHhHhHHHHHHHHHcC-CCCeEEEEEeccc----ccccccHHHHHHHH-HHh
Confidence            3456776 589999999999999 9976  56889999999986 3569999998531    11 1 222   233 245


Q ss_pred             CCCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          391 RMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       391 ~MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      .++|..+.-.+   .    .+-+.|+++++|+.+++|++|+++..
T Consensus       481 ~i~~pvv~D~~---~----~~~~~~~V~~iPt~ilid~~G~iv~~  518 (1057)
T PLN02919        481 NISHPVVNDGD---M----YLWRELGVSSWPTFAVVSPNGKLIAQ  518 (1057)
T ss_pred             CCCccEEECCc---h----HHHHhcCCCccceEEEECCCCeEEEE
Confidence            67776554322   2    34456999999999999999999743

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.83  E-value=8.2e-05  Score=68.18  Aligned_cols=102  Identities=18%  Similarity=0.218  Sum_probs=67.1

Q ss_pred             CCCcEEeccccc-Cc-EEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837          318 ETRTTVQIHVLK-KK-HVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP  393 (658)
Q Consensus       318 ~~~~kV~Is~L~-gK-~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP  393 (658)
                      .+|+.++++++. +| .|++||-+. |||.  .+++.|.+.|++++ ..+++||-|+..+     .+....|.+- ...|
T Consensus        10 ~~g~~~~l~~~~~~~~~vl~f~~~~-~Cp~C~~~~~~l~~~~~~~~-~~~v~vv~V~~~~-----~~~~~~~~~~-~~~~   81 (149)
T cd02970          10 AGGETVTLSALLGEGPVVVVFYRGF-GCPFCREYLRALSKLLPELD-ALGVELVAVGPES-----PEKLEAFDKG-KFLP   81 (149)
T ss_pred             CCCCEEchHHHhcCCCEEEEEECCC-CChhHHHHHHHHHHHHHHHH-hcCeEEEEEeCCC-----HHHHHHHHHh-cCCC
Confidence            467789999875 34 456666788 9975  56778999999986 4569999999732     1222234332 1233


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccC-----------------------------CceEEEEECCCCceec
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYS-----------------------------KKAIIVSVDPQGRILN  434 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~-----------------------------~iP~LVvL~pqGkv~~  434 (658)
                      |..+-     |..  +.+.+.|++.                             ..|..+|+|++|++.-
T Consensus        82 ~p~~~-----D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~  144 (149)
T cd02970          82 FPVYA-----DPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILF  144 (149)
T ss_pred             CeEEE-----CCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEE
Confidence            33222     322  2344557773                             7999999999999864

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PTZ00056 glutathione peroxidase; Provisional

Probab=97.81  E-value=0.0002  Score=71.60  Aligned_cols=112  Identities=13%  Similarity=0.187  Sum_probs=73.8

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccC-CCcchh--hHHHHHHhhcCC
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDG-SIDRQQ--ALDKFKNLQKRM  392 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~-s~~W~d--de~~F~~~~~~M  392 (658)
                      .+|+.|.++.++||.|+|.|=|. ||++  .+.+.|.++|++.+ ..+++||-||+.+. ..+.++  +-.+|-. ...+
T Consensus        27 ~~G~~vsL~~~kGkvvlv~fwAs-wC~~C~~e~p~L~~l~~~~~-~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~-~~~~  103 (199)
T PTZ00056         27 LEGTTVPMSSLKNKVLMITNSAS-KCGLTKKHVDQMNRLHSVFN-PLGLEILAFPTSQFLNQEFPNTKDIRKFND-KNKI  103 (199)
T ss_pred             CCCCEEeHHHhCCCEEEEEEECC-CCCChHHHHHHHHHHHHHHh-cCceEEEEecchhccCCCCCCHHHHHHHHH-HcCC
Confidence            45778999999999999999999 9965  57889999999986 34699999997320 001112  3444543 2345


Q ss_pred             Cceeec-----CCCCCcHHHHHHHHH----hhccCCc-------eEEEEECCCCceec
Q 046837          393 PWYSIQ-----DPAMIQPAVIKYVKE----EWKYSKK-------AIIVSVDPQGRILN  434 (658)
Q Consensus       393 PWyAVp-----f~~~i~~~~~r~ike----~f~~~~i-------P~LVvL~pqGkv~~  434 (658)
                      +|..+-     -++  ..++.+++++    .++..+.       |+-+++|++|+++.
T Consensus       104 ~fpvl~d~~v~g~~--~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~  159 (199)
T PTZ00056        104 KYNFFEPIEVNGEN--THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVA  159 (199)
T ss_pred             CceeeeeeeccCCc--cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEE
Confidence            654431     111  2245666653    2333333       37899999999984

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=97.80  E-value=0.00015  Score=71.86  Aligned_cols=109  Identities=17%  Similarity=0.210  Sum_probs=70.4

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCC--ChHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHH-hhcCCCc
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDI--SQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKN-LQKRMPW  394 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~--~~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~-~~~~MPW  394 (658)
                      .+++++.+++++||.|+|+|-..+||  |+.++..|.+.|++++. .+++||.||.++     .+....+.. .....-.
T Consensus        24 ~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~-~g~~vv~IS~d~-----~~~~~~~~~~~~~~~~~   97 (199)
T PTZ00253         24 GSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE-LNCEVLACSMDS-----EYAHLQWTLQERKKGGL   97 (199)
T ss_pred             CCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH-cCCEEEEEeCCC-----HHHHHHHHhChHhhCCc
Confidence            45568999999999999999875366  45667789999999864 589999999842     112222221 1111001


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccC----C--ceEEEEECCCCceec
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYS----K--KAIIVSVDPQGRILN  434 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~----~--iP~LVvL~pqGkv~~  434 (658)
                      -.++||-..|.  .+.+.+.|++.    +  .|..+||||+|++..
T Consensus        98 ~~~~fpll~D~--~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~  141 (199)
T PTZ00253         98 GTMAIPMLADK--TKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQ  141 (199)
T ss_pred             cccccceEECc--HhHHHHHcCCcccCCCceEEEEEEECCCCEEEE
Confidence            12334333332  34455567764    3  589999999999775

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=97.65  E-value=0.0006  Score=65.88  Aligned_cols=104  Identities=8%  Similarity=0.047  Sum_probs=72.6

Q ss_pred             CCCcEEecccccCcEEEEEEecCCC-CC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDD-IS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW  394 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~-~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW  394 (658)
                      .+|+.|++++++||.|.|+|=+. | |+  ..+++.|.+.|+++   .+++||=||.++     ....++|.+-. .+|-
T Consensus        32 ~~g~~v~l~~~~Gk~vvl~f~~s-~~cp~C~~e~~~l~~~~~~~---~~~~vv~vs~D~-----~~~~~~f~~~~-~~~~  101 (167)
T PRK00522         32 NDLSDVSLADFAGKRKVLNIFPS-IDTGVCATSVRKFNQEAAEL---DNTVVLCISADL-----PFAQKRFCGAE-GLEN  101 (167)
T ss_pred             CCCcEEehHHhCCCEEEEEEEcC-CCCCccHHHHHHHHHHHHHc---CCcEEEEEeCCC-----HHHHHHHHHhC-CCCC
Confidence            46778999999999999999999 6 74  56788899999997   379999999732     12556676543 2331


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccCCce---------EEEEECCCCceeccc
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYSKKA---------IIVSVDPQGRILNQN  436 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~~iP---------~LVvL~pqGkv~~~n  436 (658)
                      +.+-.    |.. -+.+.+.|++.+.|         ...++|++|+++...
T Consensus       102 ~~~ls----D~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~  147 (167)
T PRK00522        102 VITLS----DFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSE  147 (167)
T ss_pred             ceEee----cCC-ccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEE
Confidence            11111    211 22344568887777         999999999997654

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=97.63  E-value=0.00033  Score=68.41  Aligned_cols=110  Identities=24%  Similarity=0.358  Sum_probs=78.1

Q ss_pred             cccCCCCcEEecccccCcEEEEEEecCCCCC---hHHHHHHHHHHHHhcC-CCCeeEEEEecccCCCcchh---hHHHHH
Q 046837          314 LVDGETRTTVQIHVLKKKHVLLLISRPDDIS---QEEILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQ---ALDKFK  386 (658)
Q Consensus       314 l~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~---~~~~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~d---de~~F~  386 (658)
                      |.+. +|+.|..++|+||.++++|.-. -||   |-.+..|.++.+++.+ +.++++|+||++    |..|   .-++|-
T Consensus        37 L~d~-~G~~~~~~~~~Gk~~lv~F~yT-~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD----P~~DTp~~L~~Y~  110 (174)
T PF02630_consen   37 LTDQ-DGKTVTLDDLKGKWVLVFFGYT-RCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD----PERDTPEVLKKYA  110 (174)
T ss_dssp             EEET-TSSEEEGGGGTTSEEEEEEE-T-TSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS----TTTC-HHHHHHHH
T ss_pred             EEcC-CCCEecHHHhCCCeEEEEEEEc-CCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC----CCCCCHHHHHHHH
Confidence            5554 6778999999999999999988 885   4456679999999975 479999999984    3334   345565


Q ss_pred             HhhcCCCceeecCCCCCcHHHHHHHHHhhccC----------------CceEEEEECCCCceec
Q 046837          387 NLQKRMPWYSIQDPAMIQPAVIKYVKEEWKYS----------------KKAIIVSVDPQGRILN  434 (658)
Q Consensus       387 ~~~~~MPWyAVpf~~~i~~~~~r~ike~f~~~----------------~iP~LVvL~pqGkv~~  434 (658)
                      +.+. -.|..+-+    +.+.++.+.+.|++.                .-..+.++||+|++..
T Consensus       111 ~~~~-~~~~~ltg----~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~  169 (174)
T PF02630_consen  111 KKFG-PDFIGLTG----SREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRA  169 (174)
T ss_dssp             HCHT-TTCEEEEE----EHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEE
T ss_pred             HhcC-CCcceeEe----CHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEE
Confidence            5553 35666665    345667677776643                2347889999999864

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>PRK13190 putative peroxiredoxin; Provisional

Probab=97.62  E-value=0.00024  Score=70.96  Aligned_cols=99  Identities=19%  Similarity=0.213  Sum_probs=68.3

Q ss_pred             EEecccccCcEEEE-EEecCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHH----HHHhhc-CCC
Q 046837          322 TVQIHVLKKKHVLL-LISRPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDK----FKNLQK-RMP  393 (658)
Q Consensus       322 kV~Is~L~gK~VlL-yfSa~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~----F~~~~~-~MP  393 (658)
                      .+++++++||.|.| +|-+. |||  +.|+..|.+.|++++ +.+++||-||.++     .+....    |.+-.. .+|
T Consensus        19 ~v~l~d~~gk~vvL~~~p~~-~cp~C~~El~~l~~~~~~f~-~~~~~vi~vS~D~-----~~~~~~w~~~~~~~~g~~~~   91 (202)
T PRK13190         19 PIDLSKYKGKWVLLFSHPAD-FTPVCTTEFIAFSRRYEDFK-KLGVELVGLSVDS-----IYSHIAWLRDIEERFGIKIP   91 (202)
T ss_pred             cEeHHHhCCCEEEEEEEcCC-CCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCC-----HHHHHHHHHhHHHhcCCCce
Confidence            59999999998776 57888 985  567888999999997 4579999999732     112222    322222 345


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceec
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILN  434 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~  434 (658)
                      |..+--+     .  +.+.+.|++.      ..|..+++||+|++..
T Consensus        92 fPll~D~-----~--~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~  131 (202)
T PRK13190         92 FPVIADI-----D--KELAREYNLIDENSGATVRGVFIIDPNQIVRW  131 (202)
T ss_pred             EEEEECC-----C--hHHHHHcCCccccCCcEEeEEEEECCCCEEEE
Confidence            4443332     2  3455568874      4899999999999874

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=97.42  E-value=0.00064  Score=71.20  Aligned_cols=147  Identities=15%  Similarity=0.110  Sum_probs=90.1

Q ss_pred             HHHHHHhHhhHHHHHHHHHHhccCCcchHHHHHHHhccC--c--c---ccCCCCcEEecccc-cCcEEEEEEe-cCCCCC
Q 046837          274 WRQQIDKIRQIKEYNNLVRILGKHNRDNIKVLRALIYAE--D--L---VDGETRTTVQIHVL-KKKHVLLLIS-RPDDIS  344 (658)
Q Consensus       274 c~~~I~~~~~~e~y~~l~~lf~~~~~dn~~vlk~Li~~k--d--l---~~g~~~~kV~Is~L-~gK~VlLyfS-a~~~~~  344 (658)
                      |-+-.++.. .=..++-.+.|.+..--+.++-+.++-.+  |  +   .+| ++..++++++ +||.|.|||= +. |||
T Consensus        36 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vGd~aPdF~l~~~~~g-~~~~vsLsd~~kgk~vVL~FyPa~-ftp  112 (261)
T PTZ00137         36 CFKSVDRIS-SLKSVNGVRNYSTSEGLCNTVTSSLVGKLMPSFKGTALLND-DLVQFNSSDYFKDSYGLLVFYPLD-FTF  112 (261)
T ss_pred             hccchhhHH-HHHHHHHHHhccCCcccccccccccCCCCCCCCEeecccCC-CceEEeHHHHcCCCeEEEEEECCC-CCC
Confidence            555554421 11234566677665333444444444322  2  2   233 3346899997 8988777766 66 985


Q ss_pred             --hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHh-h-----cCCCceeecCCCCCcHHHHHHHHHhhc
Q 046837          345 --QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNL-Q-----KRMPWYSIQDPAMIQPAVIKYVKEEWK  416 (658)
Q Consensus       345 --~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~-~-----~~MPWyAVpf~~~i~~~~~r~ike~f~  416 (658)
                        +.|++.|.+.|++++ +.++|||=||+++   .  ...+.|.+. .     ..+|+.-+--++       +.+.+.|+
T Consensus       113 vCt~El~~l~~~~~ef~-~~gv~VigIS~Ds---~--~~h~aw~~~~~~~~g~~~l~fPlLsD~~-------~~iakayG  179 (261)
T PTZ00137        113 VCPSELLGFSERLKEFE-ERGVKVLGVSVDS---P--FSHKAWKELDVRQGGVSPLKFPLFSDIS-------REVSKSFG  179 (261)
T ss_pred             CCHHHHHHHHHHHHHHH-HCCCEEEEEECCC---H--HHHHHHHhhhhhhccccCcceEEEEcCC-------hHHHHHcC
Confidence              567888999999996 4569999999832   1  144555542 1     234443333322       44556688


Q ss_pred             cC-----CceEEEEECCCCceeccc
Q 046837          417 YS-----KKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       417 ~~-----~iP~LVvL~pqGkv~~~n  436 (658)
                      +.     ..|...|+||+|++....
T Consensus       180 v~~~~g~a~R~tFIID~dG~I~~~~  204 (261)
T PTZ00137        180 LLRDEGFSHRASVLVDKAGVVKHVA  204 (261)
T ss_pred             CCCcCCceecEEEEECCCCEEEEEE
Confidence            74     489999999999987643

>PRK15000 peroxidase; Provisional

Probab=97.39  E-value=0.00087  Score=67.13  Aligned_cols=93  Identities=12%  Similarity=0.228  Sum_probs=65.4

Q ss_pred             cCcEEEEEEecCCCC--ChHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchh-hHHHHHH-h---hc--CCCceeecC
Q 046837          329 KKKHVLLLISRPDDI--SQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQ-ALDKFKN-L---QK--RMPWYSIQD  399 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~--~~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~d-de~~F~~-~---~~--~MPWyAVpf  399 (658)
                      +||.|.|+|=+.+||  |+.|++.|.+.|++++. .+++||=||.++      . ..+.|.+ +   ..  .+||..+--
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~-~g~~vigvS~D~------~~~~~~w~~~~~~~~g~~~i~fpllsD  105 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK-RGVEVVGVSFDS------EFVHNAWRNTPVDKGGIGPVKYAMVAD  105 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCC------HHHHHHHHhhHHHhCCccccCceEEEC
Confidence            799988888886476  56788889999999973 569999999732      2 3344432 1   11  345554433


Q ss_pred             CCCCcHHHHHHHHHhhccC------CceEEEEECCCCceecc
Q 046837          400 PAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       400 ~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~  435 (658)
                      ++       +.+.+.|++.      ..|..+++||+|++...
T Consensus       106 ~~-------~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~  140 (200)
T PRK15000        106 VK-------REIQKAYGIEHPDEGVALRGSFLIDANGIVRHQ  140 (200)
T ss_pred             CC-------cHHHHHcCCccCCCCcEEeEEEEECCCCEEEEE
Confidence            32       3455568887      69999999999998764

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=97.37  E-value=0.00065  Score=64.30  Aligned_cols=73  Identities=14%  Similarity=0.093  Sum_probs=54.5

Q ss_pred             ccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          328 LKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      -+||.|+|+|.+. ||++|  +.+.|.+++++.+  ..+.++.|-+ |      ++  .+.                   
T Consensus        18 ~~gk~vvV~F~A~-WC~~C~~~~p~l~~l~~~~~--~~~~~v~v~v-d------~~--~~~-------------------   66 (142)
T cd02950          18 SNGKPTLVEFYAD-WCTVCQEMAPDVAKLKQKYG--DQVNFVMLNV-D------NP--KWL-------------------   66 (142)
T ss_pred             hCCCEEEEEEECC-cCHHHHHhHHHHHHHHHHhc--cCeeEEEEEc-C------Cc--ccH-------------------
Confidence            3589999999999 99776  4667888888775  4577888775 2      11  110                   


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                          .+.+.|+++++|++++++++|+++..
T Consensus        67 ----~~~~~~~V~~iPt~v~~~~~G~~v~~   92 (142)
T cd02950          67 ----PEIDRYRVDGIPHFVFLDREGNEEGQ   92 (142)
T ss_pred             ----HHHHHcCCCCCCEEEEECCCCCEEEE
Confidence                12356999999999999999998853

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=97.30  E-value=0.0012  Score=65.88  Aligned_cols=104  Identities=13%  Similarity=0.158  Sum_probs=69.1

Q ss_pred             EEecccccC-cEE-EEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHH-hhcCCCcee
Q 046837          322 TVQIHVLKK-KHV-LLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKN-LQKRMPWYS  396 (658)
Q Consensus       322 kV~Is~L~g-K~V-lLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~-~~~~MPWyA  396 (658)
                      ++.+++++| |.| +++|-+. |||.  .++..|.+.|++++ +.+++|+-||+++     .+...+|.+ ..+.+. +.
T Consensus        16 ~~~l~d~~g~k~vvlf~~pa~-~cp~C~~el~~l~~~~~~f~-~~gv~vigvS~D~-----~~~~~~~~~~i~~~~~-~~   87 (203)
T cd03016          16 PIKFHDYLGDSWGILFSHPAD-FTPVCTTELGAFAKLAPEFK-KRNVKLIGLSVDS-----VESHIKWIEDIEEYTG-VE   87 (203)
T ss_pred             cEeHHHHcCCCEEEEEEecCC-CCCcCHHHHHHHHHHHHHHH-HcCCEEEEEECCC-----HHHHHHHHhhHHHhcC-CC
Confidence            589999999 655 4467777 8864  66778999999996 3568999999843     123344432 222223 45


Q ss_pred             ecCCCCCcHHHHHHHHHhhccC----C----ceEEEEECCCCceecc
Q 046837          397 IQDPAMIQPAVIKYVKEEWKYS----K----KAIIVSVDPQGRILNQ  435 (658)
Q Consensus       397 Vpf~~~i~~~~~r~ike~f~~~----~----iP~LVvL~pqGkv~~~  435 (658)
                      ++||-..|..  +.+.+.|++.    +    .|..+||||+|++...
T Consensus        88 ~~fpil~D~~--~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~  132 (203)
T cd03016          88 IPFPIIADPD--REVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI  132 (203)
T ss_pred             CceeEEECch--HHHHHHcCCccccCCCCceeeEEEEECCCCeEEEE
Confidence            6665444433  4556667765    3    3569999999998643

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=97.25  E-value=0.0011  Score=58.39  Aligned_cols=89  Identities=15%  Similarity=0.172  Sum_probs=53.1

Q ss_pred             cCcEEEEEEecCCCCChHHHH--HHHHHHHHhcC-CCCeeEEEEecccCCCcchhhHHHHHHhh--cCCCceeecCCCCC
Q 046837          329 KKKHVLLLISRPDDISQEEIL--FLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQALDKFKNLQ--KRMPWYSIQDPAMI  403 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~~~--~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~dde~~F~~~~--~~MPWyAVpf~~~i  403 (658)
                      +||+++++|++. |||.|...  .+.+.-+-.+. ++++.++.+.+.+      +....+.-+.  ..      +++   
T Consensus         4 ~~k~~v~~F~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~------~~~---   67 (112)
T PF13098_consen    4 NGKPIVVVFTDP-WCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDD------SRDESEAVLDFDGQ------KNV---   67 (112)
T ss_dssp             TSSEEEEEEE-T-T-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHS------HHHHHHHHHSHTCH------SSC---
T ss_pred             CCCEEEEEEECC-CCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCC------cccccccccccccc------hhh---
Confidence            489999999999 99887643  34433221121 3578898888732      2222222111  11      111   


Q ss_pred             cHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          404 QPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       404 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                       ....+.+.+.|++.+-|+++++|++|+++.
T Consensus        68 -~~~~~~l~~~~~v~gtPt~~~~d~~G~~v~   97 (112)
T PF13098_consen   68 -RLSNKELAQRYGVNGTPTIVFLDKDGKIVY   97 (112)
T ss_dssp             -HHHHHHHHHHTT--SSSEEEECTTTSCEEE
T ss_pred             -hHHHHHHHHHcCCCccCEEEEEcCCCCEEE
Confidence             134557888899999999999999999763

...

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=97.18  E-value=0.0015  Score=65.32  Aligned_cols=103  Identities=15%  Similarity=0.129  Sum_probs=70.7

Q ss_pred             CCcEEecccccCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeE------EEEecccCCCcchh---hHHHHHH
Q 046837          319 TRTTVQIHVLKKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRI------VWLPIVDGSIDRQQ---ALDKFKN  387 (658)
Q Consensus       319 ~~~kV~Is~L~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEI------VwIpivD~s~~W~d---de~~F~~  387 (658)
                      +.+.++.+.|+||.+++-|-|. ||++|+  .|.|..+    + ..+|.+      +=|...|.  .|..   -++..++
T Consensus        48 ~y~~~~~~~l~GKV~lvn~~As-wc~~c~~e~P~l~~l----~-~~~~~~~~y~~t~~IN~dd~--~~~~~~fVk~fie~  119 (184)
T TIGR01626        48 VYQPWGSAELAGKVRVVHHIAG-RTSAKEXNASLIDAI----K-AAKFPPVKYQTTTIINADDA--IVGTGMFVKSSAKK  119 (184)
T ss_pred             cceeccHHHcCCCEEEEEEEec-CCChhhccchHHHHH----H-HcCCCcccccceEEEECccc--hhhHHHHHHHHHHH
Confidence            3456788899999999999999 997754  6678877    2 234777      77776431  2221   1122245


Q ss_pred             hhcCCCceeecCCCCCcHHHHHHHHHhhccCCceEE-EEECCCCceecc
Q 046837          388 LQKRMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAII-VSVDPQGRILNQ  435 (658)
Q Consensus       388 ~~~~MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~L-VvL~pqGkv~~~  435 (658)
                      ....-||-.+-...    .+  .+...|++.++|.- +|+|++|+++..
T Consensus       120 ~~~~~P~~~vllD~----~g--~v~~~~gv~~~P~T~fVIDk~GkVv~~  162 (184)
T TIGR01626       120 GKKENPWSQVVLDD----KG--AVKNAWQLNSEDSAIIVLDKTGKVKFV  162 (184)
T ss_pred             hcccCCcceEEECC----cc--hHHHhcCCCCCCceEEEECCCCcEEEE
Confidence            56678987666633    22  23457999999888 799999998743

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>TIGR02740 TraF-like TraF-like protein

Probab=97.16  E-value=0.00037  Score=72.99  Aligned_cols=89  Identities=13%  Similarity=0.138  Sum_probs=62.9

Q ss_pred             cEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeec
Q 046837          321 TTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQ  398 (658)
Q Consensus       321 ~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVp  398 (658)
                      +...++.|+||.++++|.+. ||++|  +.+.|.+++++..    ++|+.|++++      +..       ..+|-+   
T Consensus       157 ~~~~l~~l~~k~~Lv~F~As-wCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~------~~~-------~~fp~~---  215 (271)
T TIGR02740       157 KDRVMKDLAKKSGLFFFFKS-DCPYCHQQAPILQAFEDRYG----IEVLPVSVDG------GPL-------PGFPNA---  215 (271)
T ss_pred             HHHHHHHhcCCeEEEEEECC-CCccHHHHhHHHHHHHHHcC----cEEEEEeCCC------Ccc-------ccCCcc---
Confidence            34678889999999999999 99765  5678998888863    8999999732      111       112222   


Q ss_pred             CCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccch
Q 046837          399 DPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNA  437 (658)
Q Consensus       399 f~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA  437 (658)
                      ..   +    +.+.+.|+++++|++++++++|+.+..-+
T Consensus       216 ~~---d----~~la~~~gV~~vPtl~Lv~~~~~~v~~v~  247 (271)
T TIGR02740       216 RP---D----AGQAQQLKIRTVPAVFLADPDPNQFTPIG  247 (271)
T ss_pred             cC---C----HHHHHHcCCCcCCeEEEEECCCCEEEEEE
Confidence            11   1    12456799999999999999765544433

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=97.11  E-value=0.0016  Score=65.00  Aligned_cols=87  Identities=9%  Similarity=0.031  Sum_probs=64.0

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCce
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWY  395 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWy  395 (658)
                      .+|+.+.++.++    +++|-+. |||+  .|.+.|+++|++.+    |+|+-|++++      +.+             
T Consensus        61 ~dG~~v~lsd~~----lV~Fwas-wCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~------~~~-------------  112 (181)
T PRK13728         61 SNGRQVNLADWK----VVLFMQG-HCPYCHQFDPVLKQLAQQYG----FSVFPYTLDG------QGD-------------  112 (181)
T ss_pred             CCCCEeehhHce----EEEEECC-CCHhHHHHHHHHHHHHHHcC----CEEEEEEeCC------CCC-------------
Confidence            477889999998    5668889 9965  57889999999973    9999999732      111             


Q ss_pred             eecCCCCCc-HHHHHHHHHhhcc--CCceEEEEECCCCceecc
Q 046837          396 SIQDPAMIQ-PAVIKYVKEEWKY--SKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       396 AVpf~~~i~-~~~~r~ike~f~~--~~iP~LVvL~pqGkv~~~  435 (658)
                       +.||-.++ ..  ..+.+.|+.  .++|+.+++|++|+++-+
T Consensus       113 -~~fPv~~dd~~--~~~~~~~g~~~~~iPttfLId~~G~i~~~  152 (181)
T PRK13728        113 -TAFPEALPAPP--DVMQTFFPNIPVATPTTFLVNVNTLEALP  152 (181)
T ss_pred             -CCCceEecCch--hHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence             34554442 22  345667884  699999999999998643

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=97.07  E-value=0.0028  Score=59.38  Aligned_cols=79  Identities=8%  Similarity=-0.015  Sum_probs=49.9

Q ss_pred             cCcEEEEEEecCCCCChHHHH-----HHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837          329 KKKHVLLLISRPDDISQEEIL-----FLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI  403 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~~~-----~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i  403 (658)
                      ++|.|+|+|++. ||+.|...     .-.++-+.+.  .+|-.|-|=.       ++.. ...                 
T Consensus        14 ~~KpVll~f~a~-WC~~Ck~me~~~f~~~~V~~~l~--~~fv~VkvD~-------~~~~-~~~-----------------   65 (124)
T cd02955          14 EDKPIFLSIGYS-TCHWCHVMEHESFEDEEVAAILN--ENFVPIKVDR-------EERP-DVD-----------------   65 (124)
T ss_pred             cCCeEEEEEccC-CCHhHHHHHHHccCCHHHHHHHh--CCEEEEEEeC-------CcCc-HHH-----------------
Confidence            489999999999 99876522     1234444443  4565544322       1111 011                 


Q ss_pred             cHHHHHHHHHhhccCCceEEEEECCCCceeccc
Q 046837          404 QPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       404 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~n  436 (658)
                       ....++....|++.|.|++|++||+|++++..
T Consensus        66 -~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~   97 (124)
T cd02955          66 -KIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG   97 (124)
T ss_pred             -HHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence             11233445578999999999999999998765

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=97.07  E-value=0.0026  Score=55.82  Aligned_cols=72  Identities=10%  Similarity=0.018  Sum_probs=49.3

Q ss_pred             cCcEEEEEEecCCCCChHHHH--HH---HHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837          329 KKKHVLLLISRPDDISQEEIL--FL---SNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI  403 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~~~--~L---~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i  403 (658)
                      +||.|+++|++. ||++|...  .+   .++.+.++  +++.++.|-.       ++++                     
T Consensus        10 ~~k~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~vd~-------~~~~---------------------   58 (104)
T cd02953          10 QGKPVFVDFTAD-WCVTCKVNEKVVFSDPEVQAALK--KDVVLLRADW-------TKND---------------------   58 (104)
T ss_pred             cCCeEEEEEEcc-hhHHHHHHHHHhcCCHHHHHHHh--CCeEEEEEec-------CCCC---------------------
Confidence            478999999999 99887543  33   45666664  2555555543       2211                     


Q ss_pred             cHHHHHHHHHhhccCCceEEEEECC-CCcee
Q 046837          404 QPAVIKYVKEEWKYSKKAIIVSVDP-QGRIL  433 (658)
Q Consensus       404 ~~~~~r~ike~f~~~~iP~LVvL~p-qGkv~  433 (658)
                        .....+.+.|++.++|++++++| +|+++
T Consensus        59 --~~~~~~~~~~~i~~~Pti~~~~~~~g~~~   87 (104)
T cd02953          59 --PEITALLKRFGVFGPPTYLFYGPGGEPEP   87 (104)
T ss_pred             --HHHHHHHHHcCCCCCCEEEEECCCCCCCC
Confidence              11234566799999999999999 89875

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=97.03  E-value=0.0047  Score=59.80  Aligned_cols=82  Identities=13%  Similarity=0.140  Sum_probs=54.9

Q ss_pred             cccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCc
Q 046837          327 VLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQ  404 (658)
Q Consensus       327 ~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~  404 (658)
                      ...++.++++|-+. ||++  .+.|.|.++|++.    +++|+.|++++      +..+.|       |   +.++.  +
T Consensus        47 ~~l~~~~lvnFWAs-WCppCr~e~P~L~~l~~~~----~~~Vi~Vs~d~------~~~~~f-------p---~~~~~--~  103 (153)
T TIGR02738        47 ANQDDYALVFFYQS-TCPYCHQFAPVLKRFSQQF----GLPVYAFSLDG------QGLTGF-------P---DPLPA--T  103 (153)
T ss_pred             hhcCCCEEEEEECC-CChhHHHHHHHHHHHHHHc----CCcEEEEEeCC------Cccccc-------c---cccCC--c
Confidence            34456669999999 9966  5688999999886    38999999732      111111       2   22221  1


Q ss_pred             HHHHHHHHHhh---ccCCceEEEEECCCCceec
Q 046837          405 PAVIKYVKEEW---KYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       405 ~~~~r~ike~f---~~~~iP~LVvL~pqGkv~~  434 (658)
                      ..   .+...|   ++.++|+.+++|++|+++-
T Consensus       104 ~~---~~~~~~~~~~v~~iPTt~LID~~G~~i~  133 (153)
T TIGR02738       104 PE---VMQTFFPNPRPVVTPATFLVNVNTRKAY  133 (153)
T ss_pred             hH---HHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence            12   223345   7899999999999988643

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PRK13599 putative peroxiredoxin; Provisional

Probab=97.01  E-value=0.0029  Score=64.28  Aligned_cols=110  Identities=15%  Similarity=0.062  Sum_probs=71.4

Q ss_pred             CCCCcEEecccccCcEE-EEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837          317 GETRTTVQIHVLKKKHV-LLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP  393 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~V-lLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP  393 (658)
                      ...|+.+..++++||.| +++|=+. |||.  .|+..|.+.|++++. .+++||=||.++     ......|.+..+.+-
T Consensus        15 t~~G~~~~~~~~~Gk~vVL~~~pa~-~tpvCt~El~~l~~~~~~f~~-~gv~vigIS~D~-----~~~~~~w~~~i~~~~   87 (215)
T PRK13599         15 TTQGVKRLPEDYAGKWFVLFSHPAD-FTPVCTTEFVEFARKANDFKE-LNTELIGLSVDQ-----VFSHIKWVEWIKDNT   87 (215)
T ss_pred             CCCCcEecHHHHCCCeEEEEEeCCC-CCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCCC-----HHHHHHHHHhHHHhc
Confidence            34566677789999974 6677788 9854  677789999999863 468999999732     114555654322110


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhcc-------CCceEEEEECCCCceecc
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKY-------SKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~-------~~iP~LVvL~pqGkv~~~  435 (658)
                      =+.++||=..|..  +.+.+.|++       ...|...|+||+|++...
T Consensus        88 ~~~i~fPil~D~~--~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~  134 (215)
T PRK13599         88 NIAIPFPVIADDL--GKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI  134 (215)
T ss_pred             CCCCceeEEECCC--chHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence            0123443322221  234455776       368999999999999765

>PRK13191 putative peroxiredoxin; Provisional

Probab=96.96  E-value=0.0034  Score=63.69  Aligned_cols=102  Identities=14%  Similarity=0.187  Sum_probs=67.5

Q ss_pred             CCcEEec-ccccCcEEEE-EEecCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc----
Q 046837          319 TRTTVQI-HVLKKKHVLL-LISRPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK----  390 (658)
Q Consensus       319 ~~~kV~I-s~L~gK~VlL-yfSa~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~----  390 (658)
                      .|+ +.. +.++||.|.| +|=+. ||+  +.|+..|.+.|++++. .+.+||=||+++     ......|.+...    
T Consensus        22 ~G~-~~l~~~~~GK~vvLff~pa~-ftpvC~tEl~~l~~~~~ef~~-~g~~VigvS~Ds-----~~~h~aw~~~~~~~~~   93 (215)
T PRK13191         22 HGK-IKLPDDYKGRWFVLFSHPGD-FTPVCTTEFYSFAKKYEEFKK-LNTELIGLSVDS-----NISHIEWVMWIEKNLK   93 (215)
T ss_pred             CCC-EEcHHHhCCCcEEEEEeCCC-CCCcCHHHHHHHHHHHHHHHH-CCCEEEEEECCC-----HHHHHHHHhhHHHhcC
Confidence            454 555 4589997665 66777 984  5778889999999963 469999999732     114344543221    


Q ss_pred             -CCCceeecCCCCCcHHHHHHHHHhhccC-------CceEEEEECCCCceecc
Q 046837          391 -RMPWYSIQDPAMIQPAVIKYVKEEWKYS-------KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       391 -~MPWyAVpf~~~i~~~~~r~ike~f~~~-------~iP~LVvL~pqGkv~~~  435 (658)
                       ..||..+--++       +.+.+.|++-       ..|...||||+|++...
T Consensus        94 ~~i~fPllsD~~-------~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~  139 (215)
T PRK13191         94 VEVPFPIIADPM-------GNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLI  139 (215)
T ss_pred             CCCceEEEECCc-------hHHHHHcCCcccccCCceeEEEEEECCCCEEEEE
Confidence             45554443332       3444557753       37999999999998764

>PRK13189 peroxiredoxin; Provisional

Probab=96.93  E-value=0.0043  Score=63.18  Aligned_cols=102  Identities=14%  Similarity=0.193  Sum_probs=65.2

Q ss_pred             CCCcEEeccc-ccCcEEEE-EEecCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHH-hhc--
Q 046837          318 ETRTTVQIHV-LKKKHVLL-LISRPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKN-LQK--  390 (658)
Q Consensus       318 ~~~~kV~Is~-L~gK~VlL-yfSa~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~-~~~--  390 (658)
                      ..|+ +.+++ ++||.|.| +|=+. ||+  +.|+..|.+.|++.+ +.+.+||-||.++.     ....+|-+ +.+  
T Consensus        23 ~~g~-~~l~d~~~Gk~vvL~f~pa~-fcpvC~tEl~~l~~~~~ef~-~~~v~VigvS~D~~-----~~h~aw~~~~~~~~   94 (222)
T PRK13189         23 THGP-IKLPDDYKGKWFVLFSHPAD-FTPVCTTEFVAFQKRYDEFR-ELNTELIGLSIDQV-----FSHIKWVEWIKEKL   94 (222)
T ss_pred             CCCC-EeeHHHhCCCeEEEEEeCCC-CCCCCHHHHHHHHHHHHHHH-HcCCEEEEEECCCH-----HHHHHHHHhHHHhc
Confidence            3443 66665 69997655 56677 985  567888999999996 45799999998421     13334433 221  


Q ss_pred             --CCCceeecCCCCCcHHHHHHHHHhhccC-------CceEEEEECCCCceec
Q 046837          391 --RMPWYSIQDPAMIQPAVIKYVKEEWKYS-------KKAIIVSVDPQGRILN  434 (658)
Q Consensus       391 --~MPWyAVpf~~~i~~~~~r~ike~f~~~-------~iP~LVvL~pqGkv~~  434 (658)
                        .+|+.-+--+     .  +.+.+.|++.       ..|..++|||+|++..
T Consensus        95 g~~i~fPllsD~-----~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~  140 (222)
T PRK13189         95 GVEIEFPIIADD-----R--GEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRA  140 (222)
T ss_pred             CcCcceeEEEcC-----c--cHHHHHhCCCccccCCCceeEEEEECCCCeEEE
Confidence              3444333222     2  3444557754       4799999999999854

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=96.87  E-value=0.009  Score=59.49  Aligned_cols=123  Identities=7%  Similarity=0.103  Sum_probs=79.3

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCCh-HHHHHHHHHHHHhcCCCCeeEEEEecccC-CCcchh--hHHHHHH--hhcC
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQ-EEILFLSNMYKDLKESKECRIVWLPIVDG-SIDRQQ--ALDKFKN--LQKR  391 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~-~~~~~L~~iY~~lk~~~~fEIVwIpivD~-s~~W~d--de~~F~~--~~~~  391 (658)
                      .+|+.|++++++||.|++.|-|. ||+. .+.+.|.++|++.+ ..+|+||=||..+- ..+.++  +-..|-.  +--+
T Consensus        13 ~~G~~v~Ls~~~GKvvLVvf~AS-~C~~~~q~~~L~~L~~~y~-~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~   90 (183)
T PRK10606         13 IDGEVTTLEKYAGNVLLIVNVAS-KCGLTPQYEQLENIQKAWA-DQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT   90 (183)
T ss_pred             CCCCEEeHHHhCCCEEEEEEEeC-CCCCcHHHHHHHHHHHHHh-hCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC
Confidence            46678999999999999999999 9964 46778999999986 35699999998320 001111  3344432  2222


Q ss_pred             CCce---eecCCCCCcHHHHHHHHHhhccCCc----------------eE----------EEEECCCCceeccchHHHHH
Q 046837          392 MPWY---SIQDPAMIQPAVIKYVKEEWKYSKK----------------AI----------IVSVDPQGRILNQNAFHTLW  442 (658)
Q Consensus       392 MPWy---AVpf~~~i~~~~~r~ike~f~~~~i----------------P~----------LVvL~pqGkv~~~nA~~mI~  442 (658)
                      .|=+   .|.-+.  ..++-+||++.......                |.          =-++|++|+|+.        
T Consensus        91 Fpv~~k~dvnG~~--~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~--------  160 (183)
T PRK10606         91 FPMFSKIEVNGEG--RHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQ--------  160 (183)
T ss_pred             ceeEEEEccCCCC--CCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEE--------
Confidence            3322   111111  23588999876543211                11          467899999964        


Q ss_pred             HhCCccccCC
Q 046837          443 IWGISAFPFT  452 (658)
Q Consensus       443 ~wG~~AFPFT  452 (658)
                      .|+...-|-+
T Consensus       161 r~~~~~~p~~  170 (183)
T PRK10606        161 RFSPDMTPED  170 (183)
T ss_pred             EECCCCCCCH
Confidence            4888888854

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=96.64  E-value=0.0065  Score=55.21  Aligned_cols=82  Identities=17%  Similarity=0.294  Sum_probs=53.1

Q ss_pred             cC-cEEEEEEecCCCCChHHH--HHH---HHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 046837          329 KK-KHVLLLISRPDDISQEEI--LFL---SNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAM  402 (658)
Q Consensus       329 ~g-K~VlLyfSa~~~~~~~~~--~~L---~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~  402 (658)
                      +| |.|+++|++. ||++|..  +.+   ..+.+.++  ++|.++-|.+.+.     .....|+.            .. 
T Consensus        12 ~~~k~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~-----~~~~~~~~------------~~-   70 (125)
T cd02951          12 DGKKPLLLLFSQP-GCPYCDKLKRDYLNDPAVQAYIR--AHFVVVYINIDGD-----KEVTDFDG------------EA-   70 (125)
T ss_pred             cCCCcEEEEEeCC-CCHHHHHHHHHhcCcHHHHHHHH--hheEEEEEEccCC-----ceeeccCC------------CC-
Confidence            36 8899999999 9987653  333   24555554  4677777776320     01111211            00 


Q ss_pred             CcHHHHHHHHHhhccCCceEEEEECCC-Cceec
Q 046837          403 IQPAVIKYVKEEWKYSKKAIIVSVDPQ-GRILN  434 (658)
Q Consensus       403 i~~~~~r~ike~f~~~~iP~LVvL~pq-Gkv~~  434 (658)
                         ...+.+...|++++.|++++++++ |+++.
T Consensus        71 ---~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~  100 (125)
T cd02951          71 ---LSEKELARKYRVRFTPTVIFLDPEGGKEIA  100 (125)
T ss_pred             ---ccHHHHHHHcCCccccEEEEEcCCCCceeE
Confidence               124566778999999999999999 88764

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=96.52  E-value=0.0091  Score=51.34  Aligned_cols=67  Identities=7%  Similarity=0.153  Sum_probs=48.4

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|.  .+.|.++++...  +.  +.++-+ |      -++                        
T Consensus        11 ~~~~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~--~~--~~~~~v-d------~~~------------------------   54 (96)
T cd02956          11 TQVPVVVDFWAP-RSPPSKELLPLLERLAEEYQ--GQ--FVLAKV-N------CDA------------------------   54 (96)
T ss_pred             CCCeEEEEEECC-CChHHHHHHHHHHHHHHHhC--Cc--EEEEEE-e------ccC------------------------
Confidence            378999999999 998765  567888887764  22  556665 1      011                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCcee
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                       .+.+.+.|++++.|++++++ +|+.+
T Consensus        55 -~~~l~~~~~i~~~Pt~~~~~-~g~~~   79 (96)
T cd02956          55 -QPQIAQQFGVQALPTVYLFA-AGQPV   79 (96)
T ss_pred             -CHHHHHHcCCCCCCEEEEEe-CCEEe
Confidence             01355679999999999997 89875

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=96.34  E-value=0.02  Score=50.81  Aligned_cols=69  Identities=10%  Similarity=0.090  Sum_probs=48.1

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+|.|.+. ||++|.  .+.|.++.++.   .+  +.|+-+ |    .+++.                        
T Consensus        14 ~~k~vvv~F~a~-wC~~C~~~~p~l~~la~~~---~~--v~~~~v-d----~d~~~------------------------   58 (103)
T cd02985          14 KGRLVVLEFALK-HSGPSVKIYPTMVKLSRTC---ND--VVFLLV-N----GDEND------------------------   58 (103)
T ss_pred             CCCEEEEEEECC-CCHhHHHHhHHHHHHHHHC---CC--CEEEEE-E----CCCCh------------------------
Confidence            489999999999 998764  56788887776   23  455555 1    11211                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCcee
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                      ..+.+.+.|+++++|+++++ .+|+++
T Consensus        59 ~~~~l~~~~~V~~~Pt~~~~-~~G~~v   84 (103)
T cd02985          59 STMELCRREKIIEVPHFLFY-KDGEKI   84 (103)
T ss_pred             HHHHHHHHcCCCcCCEEEEE-eCCeEE
Confidence            12245567999999998777 789875

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=95.96  E-value=0.013  Score=50.32  Aligned_cols=54  Identities=11%  Similarity=0.033  Sum_probs=42.2

Q ss_pred             CcEEEEEccCC-chHHHHHHHHHHHHHhhcC--CceeEEEeeccChhhHHHHhhccc
Q 046837          485 ERFICLYGGND-EAWIRKFRNSAKDVASKAQ--INWGMAYVGKKNAKKRLEEISSSI  538 (658)
Q Consensus       485 gK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~--~~~E~v~Vgkdn~~e~v~~~~~~i  538 (658)
                      ||+++|||.+. -..|+++.+.+.+++++.+  ..+++|+|+.|...+..++..+..
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~   57 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN   57 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence            89999999994 2445999999999987644  999999999998777777766555

...

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=95.94  E-value=0.094  Score=53.13  Aligned_cols=111  Identities=16%  Similarity=0.307  Sum_probs=75.4

Q ss_pred             ccCCCCcEEecccccCcEEEEEEecCCCC---ChHHHHHHHHHHHHhc-C-CCCeeEEEEecccCCCcchhhHHHHHHhh
Q 046837          315 VDGETRTTVQIHVLKKKHVLLLISRPDDI---SQEEILFLSNMYKDLK-E-SKECRIVWLPIVDGSIDRQQALDKFKNLQ  389 (658)
Q Consensus       315 ~~g~~~~kV~Is~L~gK~VlLyfSa~~~~---~~~~~~~L~~iY~~lk-~-~~~fEIVwIpivD~s~~W~dde~~F~~~~  389 (658)
                      +....|+++....|+||.+++||.=- -|   ||-.+..|.++.++|. . ..++.+|+|+++    ++.|..+.-++|-
T Consensus        52 l~d~~G~~~~~~~l~Gk~~lv~FgyT-~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD----PerDtp~~lk~Y~  126 (207)
T COG1999          52 LTDQDGKPFTLKDLKGKPSLVFFGYT-HCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD----PERDTPEVLKKYA  126 (207)
T ss_pred             eecCCCCEeeccccCCCEEEEEeecC-CCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC----CCCCCHHHHHHHh
Confidence            34457888999999999999999966 56   5677788999999997 3 589999999984    4455444555555


Q ss_pred             c--C-CCceeecCCCCCcHHHHHHHHHhhcc---------------CCceEEEEECCCCceec
Q 046837          390 K--R-MPWYSIQDPAMIQPAVIKYVKEEWKY---------------SKKAIIVSVDPQGRILN  434 (658)
Q Consensus       390 ~--~-MPWyAVpf~~~i~~~~~r~ike~f~~---------------~~iP~LVvL~pqGkv~~  434 (658)
                      .  - =+|-.+--+    .+.++.+...|++               .+-..+.++||+|++..
T Consensus       127 ~~~~~~~~~~ltg~----~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~  185 (207)
T COG1999         127 ELNFDPRWIGLTGT----PEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLG  185 (207)
T ss_pred             cccCCCCeeeeeCC----HHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEE
Confidence            4  1 124444442    2333333333333               34456788899998864

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=95.85  E-value=0.015  Score=53.40  Aligned_cols=71  Identities=15%  Similarity=0.169  Sum_probs=43.2

Q ss_pred             cCcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+|.|+|. ||++|..  +.+.+.-+...  .+-.+|.|-+ |      ++++..                     
T Consensus        18 ~~kpVlV~F~a~-WC~~C~~~~~~~~~~~~~~~--~~~~fv~v~v-d------~~~~~~---------------------   66 (117)
T cd02959          18 SGKPLMLLIHKT-WCGACKALKPKFAESKEISE--LSHNFVMVNL-E------DDEEPK---------------------   66 (117)
T ss_pred             cCCcEEEEEeCC-cCHHHHHHHHHHhhhHHHHh--hcCcEEEEEe-c------CCCCch---------------------
Confidence            488999999999 9988763  33444333222  1223455544 1      111000                     


Q ss_pred             HHHHHHHhhccCC--ceEEEEECCCCceecc
Q 046837          407 VIKYVKEEWKYSK--KAIIVSVDPQGRILNQ  435 (658)
Q Consensus       407 ~~r~ike~f~~~~--iP~LVvL~pqGkv~~~  435 (658)
                           .+.|++.+  +|+++++||+|+++..
T Consensus        67 -----~~~~~~~g~~vPt~~f~~~~Gk~~~~   92 (117)
T cd02959          67 -----DEEFSPDGGYIPRILFLDPSGDVHPE   92 (117)
T ss_pred             -----hhhcccCCCccceEEEECCCCCCchh
Confidence                 11356665  9999999999999753

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=95.82  E-value=0.017  Score=51.40  Aligned_cols=69  Identities=7%  Similarity=-0.015  Sum_probs=48.8

Q ss_pred             cccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCc
Q 046837          327 VLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQ  404 (658)
Q Consensus       327 ~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~  404 (658)
                      .++||.|++.|.|. ||++|  ..+.|.++.++.+   +  +.++-+++       +.               .+     
T Consensus        15 ~~~g~~vlV~F~a~-WC~~C~~~~p~l~~la~~~~---~--~~~~~vd~-------~~---------------~~-----   61 (100)
T cd02999          15 FNREDYTAVLFYAS-WCPFSASFRPHFNALSSMFP---Q--IRHLAIEE-------SS---------------IK-----   61 (100)
T ss_pred             hcCCCEEEEEEECC-CCHHHHhHhHHHHHHHHHhc---c--CceEEEEC-------CC---------------CC-----
Confidence            47899999999999 99765  4678888888774   2  44555521       20               11     


Q ss_pred             HHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          405 PAVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       405 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                          ..+.+.|++++.|+++++++. .+.
T Consensus        62 ----~~l~~~~~V~~~PT~~lf~~g-~~~   85 (100)
T cd02999          62 ----PSLLSRYGVVGFPTILLFNST-PRV   85 (100)
T ss_pred             ----HHHHHhcCCeecCEEEEEcCC-cee
Confidence                134567999999999999754 443

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=95.74  E-value=0.05  Score=47.42  Aligned_cols=67  Identities=10%  Similarity=0.171  Sum_probs=47.3

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      .+|.|+++|++. ||+.|.  .+.|.++.+++.  +++.++.|-+       +++.                        
T Consensus        12 ~~~~vlv~f~a~-~C~~C~~~~~~l~~l~~~~~--~~v~~~~id~-------d~~~------------------------   57 (97)
T cd02949          12 SDRLILVLYTSP-TCGPCRTLKPILNKVIDEFD--GAVHFVEIDI-------DEDQ------------------------   57 (97)
T ss_pred             CCCeEEEEEECC-CChhHHHHHHHHHHHHHHhC--CceEEEEEEC-------CCCH------------------------
Confidence            368899999999 997754  667888888875  3444444332       1111                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCcee
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                         .+.+.+++.+.|+++++. +|+++
T Consensus        58 ---~l~~~~~v~~vPt~~i~~-~g~~v   80 (97)
T cd02949          58 ---EIAEAAGIMGTPTVQFFK-DKELV   80 (97)
T ss_pred             ---HHHHHCCCeeccEEEEEE-CCeEE
Confidence               134568999999999995 78876

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=95.69  E-value=0.038  Score=51.66  Aligned_cols=78  Identities=8%  Similarity=0.126  Sum_probs=54.0

Q ss_pred             cCcEEEEEEec-------CCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecC
Q 046837          329 KKKHVLLLISR-------PDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQD  399 (658)
Q Consensus       329 ~gK~VlLyfSa-------~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf  399 (658)
                      +||.|.++|+|       . ||++|.  -+.|.++.++.+  .+..++.|=+ |....|.+.                  
T Consensus        20 ~~~~vvV~F~A~~~~~~~~-WC~pCr~~~P~l~~l~~~~~--~~v~fv~Vdv-d~~~~w~d~------------------   77 (119)
T cd02952          20 EGKPIFILFYGDKDPDGQS-WCPDCVKAEPVVREALKAAP--EDCVFIYCDV-GDRPYWRDP------------------   77 (119)
T ss_pred             CCCeEEEEEEccCCCCCCC-CCHhHHhhchhHHHHHHHCC--CCCEEEEEEc-CCcccccCc------------------
Confidence            47899999999       9 998876  467999888875  3455566554 211112110                  


Q ss_pred             CCCCcHHHHHHHHHhhccC-CceEEEEECCCCceeccc
Q 046837          400 PAMIQPAVIKYVKEEWKYS-KKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       400 ~~~i~~~~~r~ike~f~~~-~iP~LVvL~pqGkv~~~n  436 (658)
                              ...+...|+++ ++|+++++...|+++.++
T Consensus        78 --------~~~~~~~~~I~~~iPT~~~~~~~~~l~~~~  107 (119)
T cd02952          78 --------NNPFRTDPKLTTGVPTLLRWKTPQRLVEDE  107 (119)
T ss_pred             --------chhhHhccCcccCCCEEEEEcCCceecchh
Confidence                    12334568888 999999998888887665

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PTZ00051 thioredoxin; Provisional

Probab=95.53  E-value=0.048  Score=46.92  Aligned_cols=65  Identities=11%  Similarity=0.130  Sum_probs=46.5

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ++.|+|+|.+. ||++|.  .+.|.++.++..     ++.|+.+.       .++                         
T Consensus        18 ~~~vli~f~~~-~C~~C~~~~~~l~~l~~~~~-----~~~~~~vd-------~~~-------------------------   59 (98)
T PTZ00051         18 NELVIVDFYAE-WCGPCKRIAPFYEECSKEYT-----KMVFVKVD-------VDE-------------------------   59 (98)
T ss_pred             CCeEEEEEECC-CCHHHHHHhHHHHHHHHHcC-----CcEEEEEE-------Ccc-------------------------
Confidence            67899999999 998765  456777776542     36777762       111                         


Q ss_pred             HHHHHHhhccCCceEEEEECCCCcee
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                      ...+.+.|++++.|+++++ .+|+++
T Consensus        60 ~~~~~~~~~v~~~Pt~~~~-~~g~~~   84 (98)
T PTZ00051         60 LSEVAEKENITSMPTFKVF-KNGSVV   84 (98)
T ss_pred             hHHHHHHCCCceeeEEEEE-eCCeEE
Confidence            1235567999999998877 688876

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=95.45  E-value=0.066  Score=45.73  Aligned_cols=69  Identities=14%  Similarity=0.062  Sum_probs=49.3

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +++.+.++|.+. ||+.|  +.+.|.++.+.++.+.++.++.+.+         ++.                       
T Consensus        12 ~~~~~~i~f~~~-~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~---------~~~-----------------------   58 (102)
T TIGR01126        12 SNKDVLVEFYAP-WCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA---------TAE-----------------------   58 (102)
T ss_pred             cCCcEEEEEECC-CCHHHHhhChHHHHHHHHhccCCceEEEEEEc---------cch-----------------------
Confidence            688999999999 99765  4567888877775444454444443         110                       


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCce
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRI  432 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv  432 (658)
                        ..+.+.|++++.|++++++++|.+
T Consensus        59 --~~~~~~~~i~~~P~~~~~~~~~~~   82 (102)
T TIGR01126        59 --KDLASRFGVSGFPTIKFFPKGKKP   82 (102)
T ss_pred             --HHHHHhCCCCcCCEEEEecCCCcc
Confidence              234566999999999999998864

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PRK10996 thioredoxin 2; Provisional

Probab=95.39  E-value=0.043  Score=51.71  Aligned_cols=69  Identities=7%  Similarity=0.197  Sum_probs=48.8

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++|.|+|+|.+. ||+++.  .+.|.+++++..  ++  +.|+-+ |.     ++                      .  
T Consensus        51 ~~k~vvv~F~a~-wC~~C~~~~~~l~~l~~~~~--~~--v~~~~v-d~-----~~----------------------~--   95 (139)
T PRK10996         51 DDLPVVIDFWAP-WCGPCRNFAPIFEDVAAERS--GK--VRFVKV-NT-----EA----------------------E--   95 (139)
T ss_pred             CCCeEEEEEECC-CCHHHHHHHHHHHHHHHHhC--CC--eEEEEE-eC-----CC----------------------C--
Confidence            478999999999 998754  567888887764  23  566665 20     11                      0  


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                        ..+.+.|++++.|++++++ +|+.+..
T Consensus        96 --~~l~~~~~V~~~Ptlii~~-~G~~v~~  121 (139)
T PRK10996         96 --RELSARFRIRSIPTIMIFK-NGQVVDM  121 (139)
T ss_pred             --HHHHHhcCCCccCEEEEEE-CCEEEEE
Confidence              1245679999999999885 8987643

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=95.35  E-value=0.088  Score=46.57  Aligned_cols=67  Identities=4%  Similarity=0.105  Sum_probs=46.1

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      .||.|.|+|.+. ||++|.  .+.|.+++++.+. ..  +.|+-+ |      -|.                      .+
T Consensus        16 ~~~~vvv~F~a~-wC~~Ck~~~p~l~~~~~~~~~-~~--~~~~~v-d------~d~----------------------~~   62 (102)
T cd02948          16 NKGLTVVDVYQE-WCGPCKAVVSLFKKIKNELGD-DL--LHFATA-E------ADT----------------------ID   62 (102)
T ss_pred             cCCeEEEEEECC-cCHhHHHHhHHHHHHHHHcCC-Cc--EEEEEE-e------CCC----------------------HH
Confidence            378999999999 998765  5678888888752 22  444444 1      011                      01


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCcee
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                          +.+.|++++.|+++++. +|+.+
T Consensus        63 ----~~~~~~v~~~Pt~~~~~-~g~~~   84 (102)
T cd02948          63 ----TLKRYRGKCEPTFLFYK-NGELV   84 (102)
T ss_pred             ----HHHHcCCCcCcEEEEEE-CCEEE
Confidence                23569999999998885 77654

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=95.19  E-value=0.34  Score=48.69  Aligned_cols=146  Identities=8%  Similarity=0.005  Sum_probs=76.3

Q ss_pred             CcEEEEEEe--cCCCCChHHHHHHHHHHHHhcC-CCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          330 KKHVLLLIS--RPDDISQEEILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       330 gK~VlLyfS--a~~~~~~~~~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      |+.|.+|++  +. ||++|..  +..+++++.. .++.+|.++-++       .++                        
T Consensus        20 ~~~i~~f~~~~a~-wC~~C~~--~~p~l~~la~~~~~~~i~~v~vd-------~~~------------------------   65 (215)
T TIGR02187        20 PVEIVVFTDNDKE-GCQYCKE--TEQLLEELSEVSPKLKLEIYDFD-------TPE------------------------   65 (215)
T ss_pred             CeEEEEEcCCCCC-CCCchHH--HHHHHHHHHhhCCCceEEEEecC-------Ccc------------------------
Confidence            566667666  58 9998764  3445555432 245778888872       011                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec--cchH---HHHHHhCCccccCChhhHHHhhhcCCCchhhcccCCChhhhh-
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN--QNAF---HTLWIWGISAFPFTAETEEALWKEKPWTLELLVGDIDATILE-  480 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~--~nA~---~mI~~wG~~AFPFT~~r~eeL~~~e~w~le~Lv~~id~~I~~-  480 (658)
                       -+.+.+.|++++.|++++++. |+.+.  ..|.   +-+.           +.++++-..     .-....+++...+ 
T Consensus        66 -~~~l~~~~~V~~~Pt~~~f~~-g~~~~~~~~G~~~~~~l~-----------~~i~~~~~~-----~~~~~~L~~~~~~~  127 (215)
T TIGR02187        66 -DKEEAEKYGVERVPTTIILEE-GKDGGIRYTGIPAGYEFA-----------ALIEDIVRV-----SQGEPGLSEKTVEL  127 (215)
T ss_pred             -cHHHHHHcCCCccCEEEEEeC-CeeeEEEEeecCCHHHHH-----------HHHHHHHHh-----cCCCCCCCHHHHHH
Confidence             123455699999999999974 44431  1121   1000           001111000     0000112232211 


Q ss_pred             --hhcCCcEEEEEccCCchHHHHHHHHHHHHHhhcCCceeEEEeeccChh
Q 046837          481 --WMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNAK  528 (658)
Q Consensus       481 --~i~egK~I~LYgg~d~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn~~  528 (658)
                        -...+..|-+|....-.+|+..-..+.+++.+ ...+.++.|..+...
T Consensus       128 l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~~~i~~~~vD~~~~~  176 (215)
T TIGR02187       128 LQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALA-NDKILGEMIEANENP  176 (215)
T ss_pred             HHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHh-cCceEEEEEeCCCCH
Confidence              12355566666666557778777888888766 335555556655433

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=95.05  E-value=0.063  Score=46.21  Aligned_cols=66  Identities=8%  Similarity=0.095  Sum_probs=45.0

Q ss_pred             EEEEEEecCCCCChHH--HHHHHHHHHHhcC-CCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHH
Q 046837          332 HVLLLISRPDDISQEE--ILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVI  408 (658)
Q Consensus       332 ~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~  408 (658)
                      .|+|+|.+. ||++|.  .+.+.+++++.+. ..++.++-|-.         +.                .         
T Consensus        18 ~~lv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~---------~~----------------~---------   62 (102)
T cd03005          18 NHFVKFFAP-WCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDC---------TQ----------------H---------   62 (102)
T ss_pred             CEEEEEECC-CCHHHHHhCHHHHHHHHHHhccCCcEEEEEEEC---------CC----------------C---------
Confidence            499999999 997654  6679999998864 23444443322         10                0         


Q ss_pred             HHHHHhhccCCceEEEEECCCCcee
Q 046837          409 KYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       409 r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                      ..+.+.|++++.|+++++ ++|+.+
T Consensus        63 ~~~~~~~~v~~~Pt~~~~-~~g~~~   86 (102)
T cd03005          63 RELCSEFQVRGYPTLLLF-KDGEKV   86 (102)
T ss_pred             hhhHhhcCCCcCCEEEEE-eCCCee
Confidence            023455899999999999 677653

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=94.96  E-value=0.32  Score=47.82  Aligned_cols=105  Identities=16%  Similarity=0.210  Sum_probs=68.3

Q ss_pred             cCCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837          316 DGETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP  393 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP  393 (658)
                      -+.+|+.|.+++++||.|.|||=--++.|.|  |.--+.+.|++++. -+.+|+=||.+.     -+..++|.+-+ ..|
T Consensus        16 p~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~-~~a~V~GIS~Ds-----~~~~~~F~~k~-~L~   88 (157)
T COG1225          16 PDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK-LGAVVLGISPDS-----PKSHKKFAEKH-GLT   88 (157)
T ss_pred             ecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh-CCCEEEEEeCCC-----HHHHHHHHHHh-CCC
Confidence            3456667999999999999999777344433  34457777777753 489999999732     12778897633 333


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccC------------CceEEEEECCCCceec
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYS------------KKAIIVSVDPQGRILN  434 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~------------~iP~LVvL~pqGkv~~  434 (658)
                      .--+--++   .+    +.+.|++-            -++.-.|||++|++..
T Consensus        89 f~LLSD~~---~~----v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~  134 (157)
T COG1225          89 FPLLSDED---GE----VAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRY  134 (157)
T ss_pred             ceeeECCc---HH----HHHHhCcccccccCccccccccceEEEECCCCeEEE
Confidence            22222211   22    44446653            3578899999999964

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=94.95  E-value=0.095  Score=50.60  Aligned_cols=53  Identities=19%  Similarity=0.273  Sum_probs=41.1

Q ss_pred             CCcEEEEEccCCc-hHHHHHHHHHHHHHhhc--------CCceeEEEeeccChhhHHHHhhc
Q 046837          484 EERFICLYGGNDE-AWIRKFRNSAKDVASKA--------QINWGMAYVGKKNAKKRLEEISS  536 (658)
Q Consensus       484 egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~--------~~~~E~v~Vgkdn~~e~v~~~~~  536 (658)
                      .||.++|||.+.+ ..|++|++.+.+++++.        +.+||+++|+.|...+.+++..+
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~   85 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLK   85 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHH
Confidence            8999999999942 33599999999987631        34699999999976666766553

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=94.83  E-value=0.078  Score=47.79  Aligned_cols=71  Identities=11%  Similarity=0.030  Sum_probs=49.7

Q ss_pred             ccCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          328 LKKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      .+||.|+++|.+. ||++|.  .+.+.++.++++. .  ++.+.-+ |.      ++                       
T Consensus        22 ~~~~~vlV~F~a~-wC~~C~~~~p~~~~l~~~~~~-~--~v~~~~v-d~------d~-----------------------   67 (111)
T cd02963          22 SFKKPYLIKITSD-WCFSCIHIEPVWKEVIQELEP-L--GVGIATV-NA------GH-----------------------   67 (111)
T ss_pred             cCCCeEEEEEECC-ccHhHHHhhHHHHHHHHHHHh-c--CceEEEE-ec------cc-----------------------
Confidence            4689999999999 998764  5678888888752 1  3444444 20      11                       


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                        -+.+.+.|++++.|+++++ ++|+.+..
T Consensus        68 --~~~l~~~~~V~~~Pt~~i~-~~g~~~~~   94 (111)
T cd02963          68 --ERRLARKLGAHSVPAIVGI-INGQVTFY   94 (111)
T ss_pred             --cHHHHHHcCCccCCEEEEE-ECCEEEEE
Confidence              0124566999999999999 48887643

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=94.75  E-value=0.11  Score=44.52  Aligned_cols=66  Identities=15%  Similarity=0.216  Sum_probs=46.9

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|+++|.+. ||++|.  .+.|.++.+++    ...+.|+-+ |      .++                         
T Consensus        14 ~~~v~v~f~~~-~C~~C~~~~~~l~~l~~~~----~~~i~~~~v-d------~~~-------------------------   56 (97)
T cd02984          14 SKLLVLHFWAP-WAEPCKQMNQVFEELAKEA----FPSVLFLSI-E------AEE-------------------------   56 (97)
T ss_pred             CCEEEEEEECC-CCHHHHHHhHHHHHHHHHh----CCceEEEEE-c------ccc-------------------------
Confidence            68999999999 997654  45677776665    236777776 2      111                         


Q ss_pred             HHHHHHhhccCCceEEEEECCCCcee
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                      ...+.+.|++.+.|+++++. +|+.+
T Consensus        57 ~~~~~~~~~i~~~Pt~~~~~-~g~~~   81 (97)
T cd02984          57 LPEISEKFEITAVPTFVFFR-NGTIV   81 (97)
T ss_pred             CHHHHHhcCCccccEEEEEE-CCEEE
Confidence            11345669999999999995 88875

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PHA02278 thioredoxin-like protein

Probab=94.73  E-value=0.052  Score=49.14  Aligned_cols=71  Identities=13%  Similarity=0.243  Sum_probs=45.5

Q ss_pred             cCcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +++.|+++|.|. ||+||..  |.|.++-++..  .+.+++.|=+.         +..++                    
T Consensus        13 ~~~~vvV~F~A~-WCgpCk~m~p~l~~l~~~~~--~~~~~~~vdvd---------~~~~d--------------------   60 (103)
T PHA02278         13 QKKDVIVMITQD-NCGKCEILKSVIPMFQESGD--IKKPILTLNLD---------AEDVD--------------------   60 (103)
T ss_pred             CCCcEEEEEECC-CCHHHHhHHHHHHHHHhhhc--CCceEEEEECC---------ccccc--------------------
Confidence            578899999999 9999873  45666544421  23445555541         11010                    


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCcee
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                       ...+.+.|+++++|+++++. +|+.+
T Consensus        61 -~~~l~~~~~I~~iPT~i~fk-~G~~v   85 (103)
T PHA02278         61 -REKAVKLFDIMSTPVLIGYK-DGQLV   85 (103)
T ss_pred             -cHHHHHHCCCccccEEEEEE-CCEEE
Confidence             11255679999999999996 35554

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=94.69  E-value=0.081  Score=46.61  Aligned_cols=65  Identities=14%  Similarity=0.041  Sum_probs=45.6

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +++.|+++|.+. ||++|.  .+.|.+++++++.. ...+.+..+ |    .  +.                +       
T Consensus        14 ~~~~vlv~f~a~-wC~~C~~~~p~l~~l~~~~~~~-~~~~~~~~v-d----~--~~----------------~-------   61 (104)
T cd03000          14 KEDIWLVDFYAP-WCGHCKKLEPVWNEVGAELKSS-GSPVRVGKL-D----A--TA----------------Y-------   61 (104)
T ss_pred             cCCeEEEEEECC-CCHHHHhhChHHHHHHHHHHhc-CCcEEEEEE-E----C--cc----------------C-------
Confidence            467899999999 998765  66798988887532 234666555 1    0  11                1       


Q ss_pred             HHHHHHHhhccCCceEEEEEC
Q 046837          407 VIKYVKEEWKYSKKAIIVSVD  427 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~  427 (658)
                        ..+.+.|++++.|+++++.
T Consensus        62 --~~~~~~~~I~~~Pt~~l~~   80 (104)
T cd03000          62 --SSIASEFGVRGYPTIKLLK   80 (104)
T ss_pred             --HhHHhhcCCccccEEEEEc
Confidence              1345669999999999994

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>PRK09381 trxA thioredoxin; Provisional

Probab=94.69  E-value=0.15  Score=44.99  Aligned_cols=67  Identities=9%  Similarity=0.048  Sum_probs=47.7

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ++.|+++|.+. ||++|.  .+.|.++.++..  +++.+.-|-..       +..                         
T Consensus        21 ~~~vvv~f~~~-~C~~C~~~~p~~~~l~~~~~--~~~~~~~vd~~-------~~~-------------------------   65 (109)
T PRK09381         21 DGAILVDFWAE-WCGPCKMIAPILDEIADEYQ--GKLTVAKLNID-------QNP-------------------------   65 (109)
T ss_pred             CCeEEEEEECC-CCHHHHHHhHHHHHHHHHhC--CCcEEEEEECC-------CCh-------------------------
Confidence            67899999999 998765  678999998875  34444444331       111                         


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceec
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        .+.++|++++.|+++++ ++|+++.
T Consensus        66 --~~~~~~~v~~~Pt~~~~-~~G~~~~   89 (109)
T PRK09381         66 --GTAPKYGIRGIPTLLLF-KNGEVAA   89 (109)
T ss_pred             --hHHHhCCCCcCCEEEEE-eCCeEEE
Confidence              13356899999999999 6888763

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=94.55  E-value=0.14  Score=45.65  Aligned_cols=69  Identities=13%  Similarity=0.178  Sum_probs=47.2

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|++.|.+. ||++|.  .+.+.++.++++ +.++.+.-|-+ |      .+.                        
T Consensus        20 ~~k~vlv~f~a~-wC~~C~~~~~~~~~la~~~~-~~~~~~~~vd~-d------~~~------------------------   66 (109)
T cd02993          20 RNQSTLVVLYAP-WCPFCQAMEASYEELAEKLA-GSNVKVAKFNA-D------GEQ------------------------   66 (109)
T ss_pred             cCCCEEEEEECC-CCHHHHHHhHHHHHHHHHhc-cCCeEEEEEEC-C------ccc------------------------
Confidence            378999999999 998765  456888887776 33455555443 1      000                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCc
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGR  431 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGk  431 (658)
                       ....++.|++++.|+++++++.|+
T Consensus        67 -~~~~~~~~~v~~~Pti~~f~~~~~   90 (109)
T cd02993          67 -REFAKEELQLKSFPTILFFPKNSR   90 (109)
T ss_pred             -hhhHHhhcCCCcCCEEEEEcCCCC
Confidence             112234589999999999988764

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=94.41  E-value=0.15  Score=44.68  Aligned_cols=67  Identities=9%  Similarity=-0.004  Sum_probs=47.5

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ||.|+|+|.+. ||++|.  .+.+.++.++++  ..+.++.|-+.       +++                         
T Consensus        18 ~~~~lv~f~a~-wC~~C~~~~~~~~~~a~~~~--~~~~~~~v~~~-------~~~-------------------------   62 (109)
T cd03002          18 NYTTLVEFYAP-WCGHCKNLKPEYAKAAKELD--GLVQVAAVDCD-------EDK-------------------------   62 (109)
T ss_pred             CCeEEEEEECC-CCHHHHhhChHHHHHHHHhc--CCceEEEEecC-------ccc-------------------------
Confidence            67799999999 997754  456777777764  44666665541       111                         


Q ss_pred             HHHHHHhhccCCceEEEEECCCCc
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGR  431 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGk  431 (658)
                      .+.+.+.|++++.|+++++++.|+
T Consensus        63 ~~~~~~~~~i~~~Pt~~~~~~~~~   86 (109)
T cd03002          63 NKPLCGKYGVQGFPTLKVFRPPKK   86 (109)
T ss_pred             cHHHHHHcCCCcCCEEEEEeCCCc
Confidence            123455699999999999998874

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=94.36  E-value=0.093  Score=60.62  Aligned_cols=72  Identities=17%  Similarity=0.130  Sum_probs=48.9

Q ss_pred             cCcEEEEEEecCCCCChHHHH--H-H--HHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837          329 KKKHVLLLISRPDDISQEEIL--F-L--SNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI  403 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~~~--~-L--~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i  403 (658)
                      +||.|.+.|.+. ||++|...  . +  .++.++++   +  ++++-+ |    |+++.+                    
T Consensus       473 ~gK~VlVdF~A~-WC~~Ck~~e~~~~~~~~v~~~l~---~--~~~v~v-D----vt~~~~--------------------  521 (571)
T PRK00293        473 KGKPVMLDLYAD-WCVACKEFEKYTFSDPQVQQALA---D--TVLLQA-D----VTANNA--------------------  521 (571)
T ss_pred             cCCcEEEEEECC-cCHhHHHHHHHhcCCHHHHHHhc---C--CEEEEE-E----CCCCCh--------------------
Confidence            379999999999 99887542  1 2  45555553   3  456655 2    333111                    


Q ss_pred             cHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          404 QPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       404 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         ..+.+.++|++.+.|+++++|++|+.++
T Consensus       522 ---~~~~l~~~~~v~g~Pt~~~~~~~G~~i~  549 (571)
T PRK00293        522 ---EDVALLKHYNVLGLPTILFFDAQGQEIP  549 (571)
T ss_pred             ---hhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence               1234556799999999999999999853

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=94.33  E-value=0.22  Score=41.58  Aligned_cols=66  Identities=14%  Similarity=0.046  Sum_probs=45.2

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ++.++++|.+. ||++|.  .+.+.++.+.++.+..+.++=|..         ++                         
T Consensus        15 ~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~---------~~-------------------------   59 (101)
T cd02961          15 SKDVLVEFYAP-WCGHCKALAPEYEKLAKELKGDGKVVVAKVDC---------TA-------------------------   59 (101)
T ss_pred             CCcEEEEEECC-CCHHHHhhhHHHHHHHHHhccCCceEEEEeec---------cc-------------------------
Confidence            45899999999 997654  556888877775334444333332         11                         


Q ss_pred             HHHHHHhhccCCceEEEEECCCC
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQG  430 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqG  430 (658)
                      ...+.+.|++++.|++++++++|
T Consensus        60 ~~~~~~~~~i~~~Pt~~~~~~~~   82 (101)
T cd02961          60 NNDLCSEYGVRGYPTIKLFPNGS   82 (101)
T ss_pred             hHHHHHhCCCCCCCEEEEEcCCC
Confidence            12345568999999999999886

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=93.81  E-value=0.25  Score=43.05  Aligned_cols=66  Identities=9%  Similarity=0.035  Sum_probs=44.7

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++|.|+++|.+. ||++|.  .+.+.++-++++  +.  +.+.-+ |    .++.                         
T Consensus        17 ~~~~~~v~f~a~-wC~~C~~~~p~~~~~a~~~~--~~--~~~~~v-d----~~~~-------------------------   61 (101)
T cd03003          17 SGEIWFVNFYSP-RCSHCHDLAPTWREFAKEMD--GV--IRIGAV-N----CGDD-------------------------   61 (101)
T ss_pred             CCCeEEEEEECC-CChHHHHhHHHHHHHHHHhc--Cc--eEEEEE-e----CCcc-------------------------
Confidence            468899999999 998765  556777766664  33  444444 1    0111                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCce
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRI  432 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv  432 (658)
                        +.+.+.+++++.|+++++ ++|+.
T Consensus        62 --~~~~~~~~v~~~Pt~~~~-~~g~~   84 (101)
T cd03003          62 --RMLCRSQGVNSYPSLYVF-PSGMN   84 (101)
T ss_pred             --HHHHHHcCCCccCEEEEE-cCCCC
Confidence              124556899999999999 78864

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=93.73  E-value=0.22  Score=42.77  Aligned_cols=68  Identities=12%  Similarity=0.040  Sum_probs=47.2

Q ss_pred             CcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|+++|.+. ||++|  +.+.+.++.++++...+  +.++.++       -+++               +        
T Consensus        18 ~~~~~v~f~a~-~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~id-------~~~~---------------~--------   64 (105)
T cd02998          18 KKDVLVEFYAP-WCGHCKNLAPEYEKLAAVFANEDD--VVIAKVD-------ADEA---------------N--------   64 (105)
T ss_pred             CCcEEEEEECC-CCHHHHhhChHHHHHHHHhCCCCC--EEEEEEE-------CCCc---------------c--------
Confidence            56899999999 99765  45678888888763334  5555551       1110               1        


Q ss_pred             HHHHHHhhccCCceEEEEECCCCc
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGR  431 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGk  431 (658)
                       ..+.+.|++++.|+++++++.|+
T Consensus        65 -~~~~~~~~i~~~P~~~~~~~~~~   87 (105)
T cd02998          65 -KDLAKKYGVSGFPTLKFFPKGST   87 (105)
T ss_pred             -hhhHHhCCCCCcCEEEEEeCCCC
Confidence             13455689999999999998764

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=93.50  E-value=0.15  Score=47.44  Aligned_cols=70  Identities=9%  Similarity=0.063  Sum_probs=44.1

Q ss_pred             cCcEEEEEEecCCCCChHHHHHHHHHHHHhcCC-CCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          329 KKKHVLLLISRPDDISQEEILFLSNMYKDLKES-KECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~~~~L~~iY~~lk~~-~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      .+|.|.+.|+|. ||+||.  .+..+++++.++ .+. +.|+-+ |.      |+                         
T Consensus        13 ~~~~vVV~F~A~-WCgpCk--~m~P~le~la~~~~~~-v~f~kV-Dv------D~-------------------------   56 (114)
T cd02954          13 EEKVVVIRFGRD-WDPVCM--QMDEVLAKIAEDVSNF-AVIYLV-DI------DE-------------------------   56 (114)
T ss_pred             CCCEEEEEEECC-CChhHH--HHHHHHHHHHHHccCc-eEEEEE-EC------CC-------------------------
Confidence            367899999999 999987  334444444322 111 334444 20      11                         


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceecc
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      ..-|.++|+++++|+++++- +|+.+..
T Consensus        57 ~~~la~~~~V~~iPTf~~fk-~G~~v~~   83 (114)
T cd02954          57 VPDFNKMYELYDPPTVMFFF-RNKHMKI   83 (114)
T ss_pred             CHHHHHHcCCCCCCEEEEEE-CCEEEEE
Confidence            11345669999999999997 6777644

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=93.46  E-value=0.21  Score=44.24  Aligned_cols=69  Identities=12%  Similarity=0.112  Sum_probs=47.8

Q ss_pred             CcEEEEEEecCCCCChH--HHHHHHHHHHHhcCC-C-CeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKES-K-ECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~-~-~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      ++.|+++|.+. ||++|  ..+.+.+++++++.+ . .-.+.|..++-       ++                       
T Consensus        18 ~~~vlv~F~a~-wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~-------d~-----------------------   66 (108)
T cd02996          18 AELVLVNFYAD-WCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDC-------DK-----------------------   66 (108)
T ss_pred             CCEEEEEEECC-CCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEEC-------CC-----------------------
Confidence            57899999999 99765  466788888887532 1 12466766620       11                       


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCce
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRI  432 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv  432 (658)
                        -+.+.+.|++++.|+++++ ++|+.
T Consensus        67 --~~~l~~~~~v~~~Ptl~~~-~~g~~   90 (108)
T cd02996          67 --ESDIADRYRINKYPTLKLF-RNGMM   90 (108)
T ss_pred             --CHHHHHhCCCCcCCEEEEE-eCCcC
Confidence              1235566999999999999 67874

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>TIGR01068 thioredoxin thioredoxin

Probab=93.36  E-value=0.39  Score=40.62  Aligned_cols=66  Identities=14%  Similarity=0.179  Sum_probs=45.0

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|.++|.+. ||+.|.  .+.|.++.+++.  ++..++.|-..       ++                          
T Consensus        14 ~~~vvi~f~~~-~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~-------~~--------------------------   57 (101)
T TIGR01068        14 DKPVLVDFWAP-WCGPCKMIAPILEELAKEYE--GKVKFVKLNVD-------EN--------------------------   57 (101)
T ss_pred             CCcEEEEEECC-CCHHHHHhCHHHHHHHHHhc--CCeEEEEEECC-------CC--------------------------
Confidence            56899999999 997654  456777766653  34555555431       11                          


Q ss_pred             HHHHHHhhccCCceEEEEECCCCcee
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                       +.+.+.|++++.|+++++ ++|+++
T Consensus        58 -~~~~~~~~v~~~P~~~~~-~~g~~~   81 (101)
T TIGR01068        58 -PDIAAKYGIRSIPTLLLF-KNGKEV   81 (101)
T ss_pred             -HHHHHHcCCCcCCEEEEE-eCCcEe
Confidence             123456899999999999 678754

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=92.92  E-value=0.52  Score=42.42  Aligned_cols=24  Identities=29%  Similarity=0.534  Sum_probs=20.2

Q ss_pred             HHHhhccCCceEEEEECC-CCceec
Q 046837          411 VKEEWKYSKKAIIVSVDP-QGRILN  434 (658)
Q Consensus       411 ike~f~~~~iP~LVvL~p-qGkv~~  434 (658)
                      +.+.+++.+.|+++++|| +|+++.
T Consensus        68 ~~~~~~~~~~P~~~~i~~~~g~~l~   92 (114)
T cd02958          68 FLQSYKVDKYPHIAIIDPRTGEVLK   92 (114)
T ss_pred             HHHHhCccCCCeEEEEeCccCcEeE
Confidence            455688999999999999 798875

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PTZ00102 disulphide isomerase; Provisional

Probab=92.91  E-value=0.2  Score=55.21  Aligned_cols=69  Identities=19%  Similarity=0.135  Sum_probs=47.5

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      .||.|+|+|.|. ||++|.  .+.+.++-++.+..+.+-+.+|-.       +.++                        
T Consensus       374 ~~k~vlv~f~a~-wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~-------~~~~------------------------  421 (477)
T PTZ00102        374 SDKDVLLEIYAP-WCGHCKNLEPVYNELGEKYKDNDSIIVAKMNG-------TANE------------------------  421 (477)
T ss_pred             CCCCEEEEEECC-CCHHHHHHHHHHHHHHHHhccCCcEEEEEEEC-------CCCc------------------------
Confidence            478899999999 997654  556777766665445565665543       1111                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCce
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRI  432 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv  432 (658)
                         .+.+.|++++.|+++++++.|++
T Consensus       422 ---~~~~~~~v~~~Pt~~~~~~~~~~  444 (477)
T PTZ00102        422 ---TPLEEFSWSAFPTILFVKAGERT  444 (477)
T ss_pred             ---cchhcCCCcccCeEEEEECCCcc
Confidence               01335888999999999987775

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=92.90  E-value=0.97  Score=43.42  Aligned_cols=103  Identities=13%  Similarity=0.120  Sum_probs=64.7

Q ss_pred             CCcEEeccc-ccCcEEEEEEecCCCCC--hHH-HHHHHHHHHHhcCCCCe-eEEEEecccCCCcchhhHHHHHHhhcC-C
Q 046837          319 TRTTVQIHV-LKKKHVLLLISRPDDIS--QEE-ILFLSNMYKDLKESKEC-RIVWLPIVDGSIDRQQALDKFKNLQKR-M  392 (658)
Q Consensus       319 ~~~kV~Is~-L~gK~VlLyfSa~~~~~--~~~-~~~L~~iY~~lk~~~~f-EIVwIpivD~s~~W~dde~~F~~~~~~-M  392 (658)
                      +|..|.+++ ++||.|.|||--..|||  ..+ +..|.+.|++++. .+. +|+=||.++     -...++|.+-..- .
T Consensus        17 ~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~-~g~~~V~~iS~D~-----~~~~~~~~~~~~~~~   90 (155)
T cd03013          17 PPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKA-KGVDEVICVSVND-----PFVMKAWGKALGAKD   90 (155)
T ss_pred             CCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHH-CCCCEEEEEECCC-----HHHHHHHHHhhCCCC
Confidence            467899999 68987666666554775  567 7789999999964 356 699999732     1266667665543 1


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccC------C-----ceEEEEECCCCceecc
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYS------K-----KAIIVSVDPQGRILNQ  435 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~------~-----iP~LVvL~pqGkv~~~  435 (658)
                      |+.-+--++       +.+.+.|++.      +     ....+|+| +|++...
T Consensus        91 ~f~lLsD~~-------~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~  136 (155)
T cd03013          91 KIRFLADGN-------GEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYL  136 (155)
T ss_pred             cEEEEECCC-------HHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEE
Confidence            222222222       2333335541      1     46678889 6998753

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=92.71  E-value=0.4  Score=41.25  Aligned_cols=71  Identities=21%  Similarity=0.278  Sum_probs=46.0

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +++.++++|.+. ||++|  ..+.+.++.++++....  ++++-+ |    .+++                .+       
T Consensus        16 ~~~~~~v~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~i-d----~~~~----------------~~-------   64 (104)
T cd02997          16 KEKHVLVMFYAP-WCGHCKKMKPEFTKAATELKEDGK--GVLAAV-D----CTKP----------------EH-------   64 (104)
T ss_pred             hCCCEEEEEECC-CCHHHHHhCHHHHHHHHHHhhCCc--eEEEEE-E----CCCC----------------cc-------
Confidence            367899999999 99765  46678888887754333  455544 1    1111                01       


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCcee
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                        ..+.+.+++++.|++++.. +|+++
T Consensus        65 --~~~~~~~~i~~~Pt~~~~~-~g~~~   88 (104)
T cd02997          65 --DALKEEYNVKGFPTFKYFE-NGKFV   88 (104)
T ss_pred             --HHHHHhCCCccccEEEEEe-CCCee
Confidence              1244568999999987764 77753

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=92.57  E-value=0.22  Score=47.43  Aligned_cols=91  Identities=13%  Similarity=0.179  Sum_probs=58.4

Q ss_pred             cCcEEEEEEecCCCCChHHHHH-----HHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837          329 KKKHVLLLISRPDDISQEEILF-----LSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI  403 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~~~~-----L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i  403 (658)
                      +||.|+|+|.+. ||+.|....     =.++-+.++  ++|  |.|.+..   +++|         ...+    |  +  
T Consensus        22 ~~Kpvmv~f~sd-wC~~Ck~l~k~~f~~~eV~~~l~--~~F--v~V~l~~---d~td---------~~~~----~--~--   76 (130)
T cd02960          22 SNKPLMVIHHLE-DCPHSQALKKAFAEHKEIQKLAQ--EDF--IMLNLVH---ETTD---------KNLS----P--D--   76 (130)
T ss_pred             CCCeEEEEEeCC-cCHhHHHHHHHhhCCHHHHHHHH--hCe--EEEEEEe---ccCC---------CCcC----c--c--
Confidence            389999999999 998765331     223333332  456  5566531   1121         0000    0  1  


Q ss_pred             cHHHHHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHHhhh
Q 046837          404 QPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWK  461 (658)
Q Consensus       404 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~  461 (658)
                                  + .++|+++++||+|+++.+    +.--++...|-+.+++.+.|.+
T Consensus        77 ------------g-~~vPtivFld~~g~vi~~----i~Gy~~~~~~~y~~~~~~~~~~  117 (130)
T cd02960          77 ------------G-QYVPRIMFVDPSLTVRAD----ITGRYSNRLYTYEPADIPLLIE  117 (130)
T ss_pred             ------------C-cccCeEEEECCCCCCccc----ccccccCccceeCcCcHHHHHH
Confidence                        1 368999999999998764    3566788888888888887764

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=92.27  E-value=0.69  Score=40.14  Aligned_cols=67  Identities=10%  Similarity=-0.010  Sum_probs=43.2

Q ss_pred             ccCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          328 LKKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      ++|+ ++|+|.+. ||++|.  .+.+.++.+..+   ...|.+..+ |    .+++.                       
T Consensus        15 ~~~~-~lv~f~a~-wC~~C~~~~p~~~~l~~~~~---~~~v~~~~v-d----~~~~~-----------------------   61 (101)
T cd02994          15 LEGE-WMIEFYAP-WCPACQQLQPEWEEFADWSD---DLGINVAKV-D----VTQEP-----------------------   61 (101)
T ss_pred             hCCC-EEEEEECC-CCHHHHHHhHHHHHHHHhhc---cCCeEEEEE-E----ccCCH-----------------------
Confidence            4565 67999999 998754  566777776543   223444444 1    01111                       


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCce
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRI  432 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv  432 (658)
                          .+.+.|++++.|+++++ ++|++
T Consensus        62 ----~~~~~~~i~~~Pt~~~~-~~g~~   83 (101)
T cd02994          62 ----GLSGRFFVTALPTIYHA-KDGVF   83 (101)
T ss_pred             ----hHHHHcCCcccCEEEEe-CCCCE
Confidence                13456899999999886 88975

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=91.84  E-value=0.81  Score=41.17  Aligned_cols=85  Identities=15%  Similarity=0.213  Sum_probs=53.2

Q ss_pred             CcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ++.|.++|.+. ||++|..  +.|.++-++.   .+  +.|+-+ |      -++                        .
T Consensus        24 ~~~vvv~F~a~-~c~~C~~l~~~l~~la~~~---~~--v~f~~v-d------~~~------------------------~   66 (113)
T cd02957          24 GTRVVVHFYEP-GFPRCKILDSHLEELAAKY---PE--TKFVKI-N------AEK------------------------A   66 (113)
T ss_pred             CCEEEEEEeCC-CCCcHHHHHHHHHHHHHHC---CC--cEEEEE-E------chh------------------------h
Confidence            57899999999 9988763  3455444443   22  445554 2      011                        1


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHH
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEA  458 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~ee  458 (658)
                        .|.+.|++++.|+++++. +|+.+. .-.+.....|   ..|+.+.++.
T Consensus        67 --~l~~~~~i~~~Pt~~~f~-~G~~v~-~~~G~~~~~~---~~~~~~~l~~  110 (113)
T cd02957          67 --FLVNYLDIKVLPTLLVYK-NGELID-NIVGFEELGG---DDFTTEDLEK  110 (113)
T ss_pred             --HHHHhcCCCcCCEEEEEE-CCEEEE-EEecHHHhCC---CCCCHHHHHH
Confidence              456679999999999886 577663 2223444455   6777666654

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=91.79  E-value=0.3  Score=41.59  Aligned_cols=67  Identities=12%  Similarity=0.136  Sum_probs=45.3

Q ss_pred             CcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|+++|.+. ||++|..  +.|.++-++...    .|.|+-++-      +                    .      
T Consensus        17 ~~~vvv~f~~~-~C~~C~~~~~~~~~~~~~~~~----~v~~~~vd~------~--------------------~------   59 (103)
T PF00085_consen   17 DKPVVVYFYAP-WCPPCKAFKPILEKLAKEYKD----NVKFAKVDC------D--------------------E------   59 (103)
T ss_dssp             SSEEEEEEEST-TSHHHHHHHHHHHHHHHHTTT----TSEEEEEET------T--------------------T------
T ss_pred             CCCEEEEEeCC-CCCccccccceeccccccccc----ccccchhhh------h--------------------c------
Confidence            68999999999 9987654  457777666543    455555410      1                    0      


Q ss_pred             HHHHHHhhccCCceEEEEECCCCcee
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                      -+.+.+.|++++.|+++++...+.+.
T Consensus        60 ~~~l~~~~~v~~~Pt~~~~~~g~~~~   85 (103)
T PF00085_consen   60 NKELCKKYGVKSVPTIIFFKNGKEVK   85 (103)
T ss_dssp             SHHHHHHTTCSSSSEEEEEETTEEEE
T ss_pred             cchhhhccCCCCCCEEEEEECCcEEE
Confidence            12355669999999999997655443

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=91.75  E-value=0.8  Score=37.22  Aligned_cols=62  Identities=13%  Similarity=0.143  Sum_probs=41.7

Q ss_pred             cEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHH
Q 046837          331 KHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVI  408 (658)
Q Consensus       331 K~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~  408 (658)
                      +.++|+|.+. ||+.|.  .+.|.++.++   ..++.++.|...       +                           .
T Consensus        11 ~~~ll~~~~~-~C~~C~~~~~~~~~~~~~---~~~~~~~~i~~~-------~---------------------------~   52 (93)
T cd02947          11 KPVVVDFWAP-WCGPCKAIAPVLEELAEE---YPKVKFVKVDVD-------E---------------------------N   52 (93)
T ss_pred             CcEEEEEECC-CChhHHHhhHHHHHHHHH---CCCceEEEEECC-------C---------------------------C
Confidence            7899999999 997754  3456666554   456666666641       1                           1


Q ss_pred             HHHHHhhccCCceEEEEECCCCc
Q 046837          409 KYVKEEWKYSKKAIIVSVDPQGR  431 (658)
Q Consensus       409 r~ike~f~~~~iP~LVvL~pqGk  431 (658)
                      +.+.+.|++.+.|+++++. +|+
T Consensus        53 ~~~~~~~~v~~~P~~~~~~-~g~   74 (93)
T cd02947          53 PELAEEYGVRSIPTFLFFK-NGK   74 (93)
T ss_pred             hhHHHhcCcccccEEEEEE-CCE
Confidence            1123458999999999995 555

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=91.33  E-value=0.65  Score=43.15  Aligned_cols=37  Identities=16%  Similarity=0.162  Sum_probs=28.5

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEec
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPI  371 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpi  371 (658)
                      |+.+.+||++. |||+|.  .|.|.++=++    .+.+|.+|-+
T Consensus        23 ~~~~iv~f~~~-~Cp~C~~~~P~l~~~~~~----~~~~~y~vdv   61 (122)
T TIGR01295        23 KETATFFIGRK-TCPYCRKFSGTLSGVVAQ----TKAPIYYIDS   61 (122)
T ss_pred             CCcEEEEEECC-CChhHHHHhHHHHHHHHh----cCCcEEEEEC
Confidence            67899999999 998765  4567766554    4577888887

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=90.95  E-value=1.2  Score=38.36  Aligned_cols=63  Identities=10%  Similarity=-0.017  Sum_probs=41.8

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ++.|+|+|.+. ||++|.  .+.+.++.++.+  +.+.+.-+-.         ++                         
T Consensus        18 ~~~vlv~f~a~-~C~~C~~~~~~~~~~~~~~~--~~~~~~~id~---------~~-------------------------   60 (103)
T cd03001          18 DDVWLVEFYAP-WCGHCKNLAPEWKKAAKALK--GIVKVGAVDA---------DV-------------------------   60 (103)
T ss_pred             CCcEEEEEECC-CCHHHHHHhHHHHHHHHHhc--CCceEEEEEC---------cc-------------------------
Confidence            45699999999 997654  567877777764  2333333221         11                         


Q ss_pred             HHHHHHhhccCCceEEEEECCC
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQ  429 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pq  429 (658)
                      ...+.+.|++++.|+++++++.
T Consensus        61 ~~~~~~~~~i~~~P~~~~~~~~   82 (103)
T cd03001          61 HQSLAQQYGVRGFPTIKVFGAG   82 (103)
T ss_pred             hHHHHHHCCCCccCEEEEECCC
Confidence            1234567899999999999755

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=90.86  E-value=1.2  Score=38.80  Aligned_cols=66  Identities=12%  Similarity=-0.002  Sum_probs=42.6

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ++.|+++|.+. ||++|.  .+.+.++-++.+  +.  +.+.-+ |-      +                   .      
T Consensus        19 ~~~v~v~f~a~-wC~~C~~~~p~~~~~~~~~~--~~--~~~~~v-d~------~-------------------~------   61 (104)
T cd03004          19 KEPWLVDFYAP-WCGPCQALLPELRKAARALK--GK--VKVGSV-DC------Q-------------------K------   61 (104)
T ss_pred             CCeEEEEEECC-CCHHHHHHHHHHHHHHHHhc--CC--cEEEEE-EC------C-------------------c------
Confidence            56899999999 998764  445555555542  23  344443 10      1                   0      


Q ss_pred             HHHHHHhhccCCceEEEEECCCCce
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRI  432 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv  432 (658)
                      .+.+.+.|++++.|+++++.+.|+.
T Consensus        62 ~~~~~~~~~i~~~Pt~~~~~~g~~~   86 (104)
T cd03004          62 YESLCQQANIRAYPTIRLYPGNASK   86 (104)
T ss_pred             hHHHHHHcCCCcccEEEEEcCCCCC
Confidence            1234566899999999999877443

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=90.54  E-value=0.54  Score=42.79  Aligned_cols=62  Identities=8%  Similarity=0.068  Sum_probs=39.9

Q ss_pred             CcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ++.|.++|++. ||++|..  +.|.++-.+.   +..+++.|-+         ++  +                      
T Consensus        22 ~~~vvv~f~a~-wC~~C~~~~~~l~~la~~~---~~i~~~~vd~---------d~--~----------------------   64 (113)
T cd02975          22 PVDLVVFSSKE-GCQYCEVTKQLLEELSELS---DKLKLEIYDF---------DE--D----------------------   64 (113)
T ss_pred             CeEEEEEeCCC-CCCChHHHHHHHHHHHHhc---CceEEEEEeC---------Cc--C----------------------
Confidence            45688999999 9988763  3455554332   3344444433         11  0                      


Q ss_pred             HHHHHHhhccCCceEEEEECCC
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQ  429 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pq  429 (658)
                       +.+.+.|++++.|++++++..
T Consensus        65 -~~l~~~~~v~~vPt~~i~~~g   85 (113)
T cd02975          65 -KEKAEKYGVERVPTTIFLQDG   85 (113)
T ss_pred             -HHHHHHcCCCcCCEEEEEeCC
Confidence             124566999999999999753

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=89.75  E-value=2.5  Score=44.87  Aligned_cols=57  Identities=9%  Similarity=0.114  Sum_probs=45.4

Q ss_pred             ccCCCCcEEecccccCcEEEEEEecCCCC---ChHHHHHHHHHHHHhcCCCCee--EEEEecc
Q 046837          315 VDGETRTTVQIHVLKKKHVLLLISRPDDI---SQEEILFLSNMYKDLKESKECR--IVWLPIV  372 (658)
Q Consensus       315 ~~g~~~~kV~Is~L~gK~VlLyfSa~~~~---~~~~~~~L~~iY~~lk~~~~fE--IVwIpiv  372 (658)
                      +...+|+.|.-.+|.||-+++||.=. -|   ||||+-.|.++-+++..+..-.  =|||+++
T Consensus       124 L~d~~Gk~~te~df~Gkw~LiYFGFT-hCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD  185 (280)
T KOG2792|consen  124 LVDHDGKRVTEKDFLGKWSLIYFGFT-HCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD  185 (280)
T ss_pred             EEecCCCeecccccccceEEEEeccc-CCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC
Confidence            34446667899999999999999987 66   6899999999999997642222  6899984

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=89.60  E-value=1.8  Score=39.40  Aligned_cols=75  Identities=11%  Similarity=0.048  Sum_probs=46.4

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|+++|.+. ||++|.  .+.+.++.++++...  ..|-+..+|      -+.+.                       
T Consensus        19 ~~~vvV~f~a~-wC~~C~~~~~~~~~la~~~~~~~--~~v~~~~vd------~~~~~-----------------------   66 (114)
T cd02992          19 PSAWLVEFYAS-WCGHCRAFAPTWKKLARDLRKWR--PVVRVAAVD------CADEE-----------------------   66 (114)
T ss_pred             CCeEEEEEECC-CCHHHHHHhHHHHHHHHHHHhcC--CceEEEEEe------ccchh-----------------------
Confidence            47899999999 998754  566888877775322  122223222      11111                       


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceeccch
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILNQNA  437 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~~nA  437 (658)
                      .+.+.+.|++++.|+++++.+.+ ....+|
T Consensus        67 ~~~~~~~~~i~~~Pt~~lf~~~~-~~~~~~   95 (114)
T cd02992          67 NVALCRDFGVTGYPTLRYFPPFS-KEATDG   95 (114)
T ss_pred             hHHHHHhCCCCCCCEEEEECCCC-ccCCCC
Confidence            12334569999999999996544 444444

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=89.37  E-value=1.4  Score=43.60  Aligned_cols=86  Identities=14%  Similarity=0.131  Sum_probs=54.1

Q ss_pred             CcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ++.|.++|.+. ||++|..  +.|.++-.+.   .  ++.|+-| |      -++                       . 
T Consensus        83 ~~~VVV~Fya~-wc~~Ck~m~~~l~~LA~~~---~--~vkF~kV-d------~d~-----------------------~-  125 (175)
T cd02987          83 DTTVVVHIYEP-GIPGCAALNSSLLCLAAEY---P--AVKFCKI-R------ASA-----------------------T-  125 (175)
T ss_pred             CcEEEEEEECC-CCchHHHHHHHHHHHHHHC---C--CeEEEEE-e------ccc-----------------------h-
Confidence            35899999999 9999873  2344444332   2  4778877 1      011                       0 


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHHh
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEAL  459 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL  459 (658)
                        .+.+.|+++.+|+++++- +|+.+.. -.+ ....|..  -|+.+++|..
T Consensus       126 --~l~~~f~v~~vPTlllyk-~G~~v~~-~vG-~~~~~g~--~f~~~~le~~  170 (175)
T cd02987         126 --GASDEFDTDALPALLVYK-GGELIGN-FVR-VTEDLGE--DFDAEDLESF  170 (175)
T ss_pred             --hhHHhCCCCCCCEEEEEE-CCEEEEE-Eec-hHHhcCC--CCCHHHHHHH
Confidence              345669999999999986 5777642 122 1234444  6777776654

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=88.93  E-value=1.1  Score=40.76  Aligned_cols=65  Identities=11%  Similarity=0.197  Sum_probs=43.3

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ++.|.++|.+. ||++|.  -+.|.++-++.   .+  +.|+-+ |.      ++                         
T Consensus        22 ~~~vvV~f~a~-~c~~C~~~~p~l~~la~~~---~~--i~f~~V-d~------~~-------------------------   63 (113)
T cd02989          22 SERVVCHFYHP-EFFRCKIMDKHLEILAKKH---LE--TKFIKV-NA------EK-------------------------   63 (113)
T ss_pred             CCcEEEEEECC-CCccHHHHHHHHHHHHHHc---CC--CEEEEE-Ec------cc-------------------------
Confidence            46899999999 998876  34555554443   22  445554 10      11                         


Q ss_pred             HHHHHHhhccCCceEEEEECCCCcee
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                      ...|.+.|+++++|+++++. +|+.+
T Consensus        64 ~~~l~~~~~v~~vPt~l~fk-~G~~v   88 (113)
T cd02989          64 APFLVEKLNIKVLPTVILFK-NGKTV   88 (113)
T ss_pred             CHHHHHHCCCccCCEEEEEE-CCEEE
Confidence            12355779999999999987 67766

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=88.43  E-value=0.95  Score=41.61  Aligned_cols=63  Identities=19%  Similarity=0.350  Sum_probs=43.5

Q ss_pred             cccCC-ChhhhhhhcCCcEEEEEccCCchHH---HHHHHHHHHHHhhcC---CceeEEEeeccChhhHHHHhhc
Q 046837          470 LVGDI-DATILEWMKEERFICLYGGNDEAWI---RKFRNSAKDVASKAQ---INWGMAYVGKKNAKKRLEEISS  536 (658)
Q Consensus       470 Lv~~i-d~~I~~~i~egK~I~LYgg~d~~Wi---r~FT~~~~~i~~~~~---~~~E~v~Vgkdn~~e~v~~~~~  536 (658)
                      |+|+- ...+.++  .||.+.|||.+  .||   ++..+.+.+++++.+   ..+++++|+-|...+.+++-++
T Consensus         3 ~~~~~~~v~l~~~--~Gk~vll~F~a--twC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~   72 (132)
T cd02964           3 LLDGEGVVPVSAL--EGKTVGLYFSA--SWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFS   72 (132)
T ss_pred             cccCCccccHHHh--CCCEEEEEEEC--CCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHh
Confidence            33443 2344554  89999999998  666   777788887766422   4799999998866555555544

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=87.81  E-value=0.71  Score=42.89  Aligned_cols=45  Identities=18%  Similarity=0.364  Sum_probs=37.2

Q ss_pred             hhhcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837          480 EWMKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKKN  526 (658)
Q Consensus       480 ~~i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn  526 (658)
                      +.++.|+++.+|||+.+ .|||.|.+.+.+++++  ....++||..|.
T Consensus        18 ~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~   63 (122)
T TIGR01295        18 EALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSEN   63 (122)
T ss_pred             HHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCC
Confidence            44678999999999964 7789999999999876  456789998873

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=86.79  E-value=1.8  Score=44.64  Aligned_cols=66  Identities=12%  Similarity=0.124  Sum_probs=46.0

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ++.++++|.+. ||++|.  .+.+.++.++++.  .  |.+.-+ |    .  ++.                        
T Consensus        52 ~~~vlV~FyAp-WC~~Ck~~~P~~e~la~~~~~--~--v~~~~V-D----~--~~~------------------------   95 (224)
T PTZ00443         52 TGPWFVKFYAP-WCSHCRKMAPAWERLAKALKG--Q--VNVADL-D----A--TRA------------------------   95 (224)
T ss_pred             CCCEEEEEECC-CChHHHHHHHHHHHHHHHcCC--C--eEEEEe-c----C--ccc------------------------
Confidence            46899999999 998764  5678888877752  2  333333 2    1  110                        


Q ss_pred             HHHHHHhhccCCceEEEEECCCCcee
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                       ..+.++|++++.|++++++ +|+++
T Consensus        96 -~~l~~~~~I~~~PTl~~f~-~G~~v  119 (224)
T PTZ00443         96 -LNLAKRFAIKGYPTLLLFD-KGKMY  119 (224)
T ss_pred             -HHHHHHcCCCcCCEEEEEE-CCEEE
Confidence             1355679999999999998 78765

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=86.00  E-value=1.4  Score=42.93  Aligned_cols=39  Identities=3%  Similarity=-0.077  Sum_probs=26.3

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEe
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLP  370 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIp  370 (658)
                      ++.|+++|.+. ||++|.  .+.|.++.++.. ..++.++-|-
T Consensus        47 ~~~vvV~Fya~-wC~~Ck~l~p~l~~la~~~~-~~~v~f~~VD   87 (152)
T cd02962          47 RVTWLVEFFTT-WSPECVNFAPVFAELSLKYN-NNNLKFGKID   87 (152)
T ss_pred             CCEEEEEEECC-CCHHHHHHHHHHHHHHHHcc-cCCeEEEEEE
Confidence            57899999999 998865  456776666553 2235545444

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=85.94  E-value=3  Score=42.46  Aligned_cols=103  Identities=14%  Similarity=0.203  Sum_probs=69.9

Q ss_pred             cEEecccccCcEEEEEEecCCCC---ChHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchh-hHHHHHHhhcCCCcee
Q 046837          321 TTVQIHVLKKKHVLLLISRPDDI---SQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQ-ALDKFKNLQKRMPWYS  396 (658)
Q Consensus       321 ~kV~Is~L~gK~VlLyfSa~~~~---~~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~d-de~~F~~~~~~MPWyA  396 (658)
                      .+|..++..||.+.|||=-. |.   ||-|+..+.+.|++.+ +.+-||+-||++.      . ...+..+.-.+-.=+.
T Consensus        24 ~~i~l~d~~gkw~VLff~P~-DFTfVCpTEi~af~~~y~eF~-~~g~eVigvS~Ds------~fsH~aW~~~~~~~~gi~   95 (194)
T COG0450          24 EEITLSDYYGKWVVLFFYPA-DFTFVCPTEIIAFAKRYEEFQ-KRGVEVIGVSTDS------VFSHKAWKATIREAGGIG   95 (194)
T ss_pred             eEEechhhcCcEEEEEeccC-CCCccCcchHHHHHhhhHHHH-HcCCEEEEEecCc------HHHHHHHHhcHHhcCCcc
Confidence            47999999999999999888 73   7888889999999986 5679999999832      2 3444433311111111


Q ss_pred             -ecCCCCCcHHHHHHHHHhhccCC------ceEEEEECCCCcee
Q 046837          397 -IQDPAMIQPAVIKYVKEEWKYSK------KAIIVSVDPQGRIL  433 (658)
Q Consensus       397 -Vpf~~~i~~~~~r~ike~f~~~~------iP~LVvL~pqGkv~  433 (658)
                       |+||=.-  ...+.|.+.|++-.      .=.+.|+||+|++-
T Consensus        96 ~i~~Pmia--D~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir  137 (194)
T COG0450          96 KIKFPMIA--DPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIR  137 (194)
T ss_pred             ceecceEE--cCchhHHHHcCCcccCCCcceeEEEEECCCCeEE
Confidence             4554321  23456677788753      23578999999874

>smart00594 UAS UAS domain

Probab=85.69  E-value=2.8  Score=38.60  Aligned_cols=67  Identities=12%  Similarity=0.259  Sum_probs=41.8

Q ss_pred             cCcEEEEEEecCCCCChHHHHH-----HHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837          329 KKKHVLLLISRPDDISQEEILF-----LSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI  403 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~~~~-----L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i  403 (658)
                      +||.+++||.+. ||+.+....     =.++-+-++  ++  .|.+.. |    +++.+                     
T Consensus        26 ~~K~~lv~~~~~-~c~~c~~~~r~vl~~~~V~~~i~--~~--fv~~~~-d----v~~~e---------------------   74 (122)
T smart00594       26 QRRLLWLYLHSQ-DSPDSQVFNRDVLCNEAVKSLIR--EN--FIFWQV-D----VDTSE---------------------   74 (122)
T ss_pred             hcCCEEEEEeCC-CCchHHHHHHHHccCHHHHHHHH--cC--EEEEEe-c----CCChh---------------------
Confidence            489999999999 998654331     122222232  22  444443 1    11211                     


Q ss_pred             cHHHHHHHHHhhccCCceEEEEECCCC
Q 046837          404 QPAVIKYVKEEWKYSKKAIIVSVDPQG  430 (658)
Q Consensus       404 ~~~~~r~ike~f~~~~iP~LVvL~pqG  430 (658)
                         + ..+.+.+++.+-|+++++||+|
T Consensus        75 ---g-~~l~~~~~~~~~P~~~~l~~~~   97 (122)
T smart00594       75 ---G-QRVSQFYKLDSFPYVAIVDPRT   97 (122)
T ss_pred             ---H-HHHHHhcCcCCCCEEEEEecCC
Confidence               2 3456668999999999999997

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=85.66  E-value=1.5  Score=39.84  Aligned_cols=62  Identities=13%  Similarity=0.153  Sum_probs=43.1

Q ss_pred             CCChhhhhhhcCCcEEEEEccCC-chHHHHHHHHHHHHHhhc---CCceeEEEeeccChhhHHHHhhc
Q 046837          473 DIDATILEWMKEERFICLYGGND-EAWIRKFRNSAKDVASKA---QINWGMAYVGKKNAKKRLEEISS  536 (658)
Q Consensus       473 ~id~~I~~~i~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~---~~~~E~v~Vgkdn~~e~v~~~~~  536 (658)
                      |-...+.+.  .||++.|||.+. -..|++..+.+.+++++.   +..+++++|+-|...+.+++-.+
T Consensus         8 G~~v~l~~~--~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~   73 (131)
T cd03009           8 GGKVPVSSL--EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFS   73 (131)
T ss_pred             CCCccHHHh--CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHH
Confidence            334445554  899999999883 233488888887776542   34799999999977666655443

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=85.63  E-value=2.3  Score=39.93  Aligned_cols=98  Identities=17%  Similarity=0.149  Sum_probs=57.5

Q ss_pred             hcCCcEEEEEccCCc-hHHHHHHHHH---HHHHhhcCCceeEEEeeccChhhHHHHhhcccccccccccccCcchhhHHH
Q 046837          482 MKEERFICLYGGNDE-AWIRKFRNSA---KDVASKAQINWGMAYVGKKNAKKRLEEISSSITKTESSHIVIDATKMWFFW  557 (658)
Q Consensus       482 i~egK~I~LYgg~d~-~Wir~FT~~~---~~i~~~~~~~~E~v~Vgkdn~~e~v~~~~~~i~~e~ls~~~~d~t~v~~FW  557 (658)
                      .++||.|+|++|+|+ .||+.+....   .+|++..+..|..|.|..+..                      |..-..  
T Consensus        12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~----------------------~~~~~~--   67 (124)
T cd02955          12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREER----------------------PDVDKI--   67 (124)
T ss_pred             HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcC----------------------cHHHHH--
Confidence            569999999999974 7788776422   356655566888888866521                      111100  


Q ss_pred             HHHHHHHHHHHhcCCCC--ccceeccccchHHHHHHhhccchhhhhhccHHHHH
Q 046837          558 ARLERMLYWKLQHGMGK--TQETARAKGTAAIDCMEKFHEWQDDALRNGFIQAL  609 (658)
Q Consensus       558 ~rlesm~~sK~q~~~~G--s~~~~~g~G~~~~~~l~~f~~Wk~~v~~kGF~~Af  609 (658)
                          -+-.-+.+.|..|  ..+++..+|..+..+  -|--+.++..+.||-.-|
T Consensus        68 ----~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~--~~~~~~~~~~~~~~~~~~  115 (124)
T cd02955          68 ----YMNAAQAMTGQGGWPLNVFLTPDLKPFFGG--TYFPPEDRYGRPGFKTVL  115 (124)
T ss_pred             ----HHHHHHHhcCCCCCCEEEEECCCCCEEeee--eecCCCCcCCCcCHHHHH
Confidence                0101112346666  337777888877776  333345555556655433

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=85.42  E-value=4.6  Score=34.50  Aligned_cols=39  Identities=18%  Similarity=0.216  Sum_probs=27.7

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEec
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPI  371 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpi  371 (658)
                      +|.|+|+|.+. ||++|.  .+.+.++.+.++...+  +.+..+
T Consensus        18 ~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~i   58 (104)
T cd02995          18 DKDVLVEFYAP-WCGHCKALAPIYEELAEKLKGDDN--VVIAKM   58 (104)
T ss_pred             CCcEEEEEECC-CCHHHHHHhhHHHHHHHHhcCCCC--EEEEEE
Confidence            57899999999 997654  5678888777754333  455554

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=85.10  E-value=4.5  Score=34.88  Aligned_cols=62  Identities=19%  Similarity=0.157  Sum_probs=42.7

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      |+.++++|.+. ||+++.  .+.|.++=++.+  +++.++||-.        | +  |.                     
T Consensus        12 ~~~~~~~f~~~-~~~~~~~~~~~~~~vA~~~~--~~v~f~~vd~--------~-~--~~---------------------   56 (103)
T cd02982          12 GKPLLVLFYNK-DDSESEELRERFKEVAKKFK--GKLLFVVVDA--------D-D--FG---------------------   56 (103)
T ss_pred             CCCEEEEEEcC-ChhhHHHHHHHHHHHHHHhC--CeEEEEEEch--------H-h--hH---------------------
Confidence            78999999999 996543  345665555554  5677777664        1 1  11                     


Q ss_pred             HHHHHHhhccC--CceEEEEECC
Q 046837          408 IKYVKEEWKYS--KKAIIVSVDP  428 (658)
Q Consensus       408 ~r~ike~f~~~--~iP~LVvL~p  428 (658)
                        .+.+.|+++  +.|++++++.
T Consensus        57 --~~~~~~~i~~~~~P~~~~~~~   77 (103)
T cd02982          57 --RHLEYFGLKEEDLPVIAIINL   77 (103)
T ss_pred             --HHHHHcCCChhhCCEEEEEec
Confidence              134458888  9999999987

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=85.09  E-value=4.4  Score=33.42  Aligned_cols=34  Identities=9%  Similarity=0.218  Sum_probs=23.2

Q ss_pred             EEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEec
Q 046837          335 LLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPI  371 (658)
Q Consensus       335 LyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpi  371 (658)
                      .+|++. ||+.|.  .+.|.++.++.+  .+++++.|-+
T Consensus         4 ~~f~~~-~C~~C~~~~~~l~~l~~~~~--~~~~~~~vd~   39 (82)
T TIGR00411         4 ELFTSP-TCPYCPAAKRVVEEVAKEMG--DAVEVEYINV   39 (82)
T ss_pred             EEEECC-CCcchHHHHHHHHHHHHHhc--CceEEEEEeC
Confidence            466778 998765  567888877764  4466666664

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=84.83  E-value=3.5  Score=36.29  Aligned_cols=71  Identities=10%  Similarity=-0.035  Sum_probs=42.9

Q ss_pred             cccccCcEEEEEEecCCCCChHHHHHHHHHHHHhcC-CCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837          325 IHVLKKKHVLLLISRPDDISQEEILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI  403 (658)
Q Consensus       325 Is~L~gK~VlLyfSa~~~~~~~~~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i  403 (658)
                      +..|++..-..+|.+. ||+.|..  +.++.+++.+ ..++++..+-+.       +    +                  
T Consensus         7 ~~~l~~pv~i~~F~~~-~C~~C~~--~~~~~~~l~~~~~~i~~~~vd~~-------~----~------------------   54 (89)
T cd03026           7 IRRLNGPINFETYVSL-SCHNCPD--VVQALNLMAVLNPNIEHEMIDGA-------L----F------------------   54 (89)
T ss_pred             HHhcCCCEEEEEEECC-CCCCcHH--HHHHHHHHHHHCCCceEEEEEhH-------h----C------------------
Confidence            3468888877778888 9987652  2334455432 234444444431       1    1                  


Q ss_pred             cHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          404 QPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       404 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                           ..+.++|++.++|++|+   +|+++..
T Consensus        55 -----~e~a~~~~V~~vPt~vi---dG~~~~~   78 (89)
T cd03026          55 -----QDEVEERGIMSVPAIFL---NGELFGF   78 (89)
T ss_pred             -----HHHHHHcCCccCCEEEE---CCEEEEe
Confidence                 12233589999999986   6877663

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=84.20  E-value=5.2  Score=37.27  Aligned_cols=68  Identities=10%  Similarity=0.191  Sum_probs=43.0

Q ss_pred             CcEEEEEEecCCC--CChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          330 KKHVLLLISRPDD--ISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       330 gK~VlLyfSa~~~--~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      |..+.|+|++. |  ||+|.  -+.|.++=++..  +...++-|=+        |+                      + 
T Consensus        27 ~~~~v~~f~~~-~~~cp~c~~i~P~leela~e~~--~~v~f~kVdi--------d~----------------------~-   72 (111)
T cd02965          27 GGDLVLLLAGD-PVRFPEVLDVAVVLPELLKAFP--GRFRAAVVGR--------AD----------------------E-   72 (111)
T ss_pred             CCCEEEEecCC-cccCcchhhhHhHHHHHHHHCC--CcEEEEEEEC--------CC----------------------C-
Confidence            45688899999 6  98754  345666555442  3344444433        11                      1 


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                         ..|.++|+++++|+|+++. +|+.+..
T Consensus        73 ---~~la~~f~V~sIPTli~fk-dGk~v~~   98 (111)
T cd02965          73 ---QALAARFGVLRTPALLFFR-DGRYVGV   98 (111)
T ss_pred             ---HHHHHHcCCCcCCEEEEEE-CCEEEEE
Confidence               1455669999999999986 6776643

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PTZ00062 glutaredoxin; Provisional

Probab=84.00  E-value=2  Score=43.80  Aligned_cols=127  Identities=13%  Similarity=0.208  Sum_probs=71.1

Q ss_pred             cEEEEEEecCCCCChHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHHHH
Q 046837          331 KHVLLLISRPDDISQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKY  410 (658)
Q Consensus       331 K~VlLyfSa~~~~~~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~r~  410 (658)
                      +.+.|||.|. ||++|.  .+..+.++|.++ --+|.|+.+ |      .+                             
T Consensus        18 g~~vl~f~a~-w~~~C~--~m~~vl~~l~~~-~~~~~F~~V-~------~d-----------------------------   57 (204)
T PTZ00062         18 GKLVLYVKSS-KEPEYE--QLMDVCNALVED-FPSLEFYVV-N------LA-----------------------------   57 (204)
T ss_pred             CcEEEEEeCC-CCcchH--HHHHHHHHHHHH-CCCcEEEEE-c------cc-----------------------------
Confidence            4578999999 999986  344555555321 124778876 1      01                             


Q ss_pred             HHHhhccCCceEEEEECCCCcee----ccchHHHHH---HhCCccccCChhhHHHhhhcCCCchhhcccCCChhhhhhhc
Q 046837          411 VKEEWKYSKKAIIVSVDPQGRIL----NQNAFHTLW---IWGISAFPFTAETEEALWKEKPWTLELLVGDIDATILEWMK  483 (658)
Q Consensus       411 ike~f~~~~iP~LVvL~pqGkv~----~~nA~~mI~---~wG~~AFPFT~~r~eeL~~~e~w~le~Lv~~id~~I~~~i~  483 (658)
                          |++.++|++|++. +|+.+    ..|+..+..   .|-..     .. .           +    .+...+.++|+
T Consensus        58 ----~~V~~vPtfv~~~-~g~~i~r~~G~~~~~~~~~~~~~~~~-----~~-~-----------~----~~~~~v~~li~  111 (204)
T PTZ00062         58 ----DANNEYGVFEFYQ-NSQLINSLEGCNTSTLVSFIRGWAQK-----GS-S-----------E----DTVEKIERLIR  111 (204)
T ss_pred             ----cCcccceEEEEEE-CCEEEeeeeCCCHHHHHHHHHHHcCC-----CC-H-----------H----HHHHHHHHHHh
Confidence                8999999999995 55554    445544321   11110     00 0           0    11223444454


Q ss_pred             CCcEEEEE--ccCCchHHHHHHHHHHHHHhhcCCceeEEEeecc
Q 046837          484 EERFICLY--GGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKK  525 (658)
Q Consensus       484 egK~I~LY--gg~d~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkd  525 (658)
                      . +-|.||  |.....||. |..++..+-+..+++++.+-|.+|
T Consensus       112 ~-~~Vvvf~Kg~~~~p~C~-~C~~~k~~L~~~~i~y~~~DI~~d  153 (204)
T PTZ00062        112 N-HKILLFMKGSKTFPFCR-FSNAVVNMLNSSGVKYETYNIFED  153 (204)
T ss_pred             c-CCEEEEEccCCCCCCCh-hHHHHHHHHHHcCCCEEEEEcCCC
Confidence            4 344444  433435563 334455554555899998877755

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=83.32  E-value=3.5  Score=38.00  Aligned_cols=66  Identities=11%  Similarity=0.122  Sum_probs=43.3

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +++.|++.|.|. ||++|.  .+.+.++-++++  +.  +.++-+ |-     | +                     +. 
T Consensus        28 ~~~~vlV~FyA~-WC~~Ck~l~p~~~~la~~~~--~~--v~~~~V-d~-----d-~---------------------~~-   73 (113)
T cd03006          28 DAEVSLVMYYAP-WDAQSQAARQEFEQVAQKLS--DQ--VLFVAI-NC-----W-W---------------------PQ-   73 (113)
T ss_pred             CCCEEEEEEECC-CCHHHHHHHHHHHHHHHHhc--CC--eEEEEE-EC-----C-C---------------------Ch-
Confidence            467899999999 998765  455666666664  22  556665 21     1 0                     01 


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCc
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGR  431 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGk  431 (658)
                        ...++++++++.|++.++ .+|+
T Consensus        74 --~l~~~~~~I~~~PTl~lf-~~g~   95 (113)
T cd03006          74 --GKCRKQKHFFYFPVIHLY-YRSR   95 (113)
T ss_pred             --HHHHHhcCCcccCEEEEE-ECCc
Confidence              112345899999999999 5665

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=83.28  E-value=4.6  Score=37.38  Aligned_cols=53  Identities=19%  Similarity=0.254  Sum_probs=44.1

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCCh-HHHHHHHHHHHHhcCCCCeeEEEEecc
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQ-EEILFLSNMYKDLKESKECRIVWLPIV  372 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~-~~~~~L~~iY~~lk~~~~fEIVwIpiv  372 (658)
                      .+|+.|+++.++||.+++.=-|. -|.- .....|.++|++.+. ..|+|+-.|..
T Consensus         9 ~~G~~v~l~~y~Gkv~LIVNvAs-~Cg~t~qy~~L~~L~~ky~~-~gl~ILaFPcn   62 (108)
T PF00255_consen    9 IDGKPVSLSKYKGKVLLIVNVAS-KCGYTKQYKQLNELYEKYKD-KGLEILAFPCN   62 (108)
T ss_dssp             TTSSEEEGGGGTTSEEEEEEEES-SSTTHHHHHHHHHHHHHHGG-GTEEEEEEEBS
T ss_pred             CCCCEECHHHcCCCEEEEEeccc-ccCCccccHHHHHHHHHHhc-CCeEEEeeehH
Confidence            36788999999999999988888 8863 355579999999874 46999999984

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=81.70  E-value=3  Score=39.60  Aligned_cols=45  Identities=4%  Similarity=-0.105  Sum_probs=35.8

Q ss_pred             hhcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeecc
Q 046837          481 WMKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKK  525 (658)
Q Consensus       481 ~i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkd  525 (658)
                      -+..||.+.|||.+.+ .+|+.+.+.+.++++..+..+.++.|.-|
T Consensus        16 a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd   61 (142)
T cd02950          16 ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVD   61 (142)
T ss_pred             HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcC
Confidence            3569999999999953 56699999999998775556778887665

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=81.57  E-value=4.1  Score=37.40  Aligned_cols=72  Identities=15%  Similarity=0.197  Sum_probs=46.9

Q ss_pred             CcEEEEEEecCCCCChHHHHHHHHHHHHhcC-CCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHH
Q 046837          330 KKHVLLLISRPDDISQEEILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVI  408 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~  408 (658)
                      +|-|.+.|+|. ||+||..  +...|++|.. ..+  ++|+=+ |      -|+                         .
T Consensus        21 ~kliVvdF~a~-wCgPCk~--i~P~~~~La~~y~~--v~Flkv-d------vde-------------------------~   63 (106)
T KOG0907|consen   21 DKLVVVDFYAT-WCGPCKA--IAPKFEKLAEKYPD--VVFLKV-D------VDE-------------------------L   63 (106)
T ss_pred             CCeEEEEEECC-CCcchhh--hhhHHHHHHHHCCC--CEEEEE-e------ccc-------------------------C
Confidence            68899999999 9999864  3456666643 244  666554 1      021                         3


Q ss_pred             HHHHHhhccCCceEEEEECC---CCceeccchH
Q 046837          409 KYVKEEWKYSKKAIIVSVDP---QGRILNQNAF  438 (658)
Q Consensus       409 r~ike~f~~~~iP~LVvL~p---qGkv~~~nA~  438 (658)
                      +-+.+.|+++..|+++.+-.   .|+++-.|..
T Consensus        64 ~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~   96 (106)
T KOG0907|consen   64 EEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA   96 (106)
T ss_pred             HhHHHhcCceEeeEEEEEECCEEEEEEecCCHH
Confidence            33455699999999999942   2455544444

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=81.55  E-value=1.5  Score=40.97  Aligned_cols=24  Identities=8%  Similarity=0.183  Sum_probs=19.3

Q ss_pred             HHHHhhccCCceEEEEECCCCceec
Q 046837          410 YVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       410 ~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                      .|.++|+++++|+|+++. +|+.+.
T Consensus        78 ~La~~~~I~~iPTl~lfk-~G~~v~  101 (120)
T cd03065          78 KVAKKLGLDEEDSIYVFK-DDEVIE  101 (120)
T ss_pred             HHHHHcCCccccEEEEEE-CCEEEE
Confidence            345569999999999995 888664

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=81.22  E-value=8.3  Score=27.89  Aligned_cols=60  Identities=15%  Similarity=0.142  Sum_probs=39.3

Q ss_pred             EEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHHHHHH
Q 046837          335 LLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKYVK  412 (658)
Q Consensus       335 LyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~r~ik  412 (658)
                      ++|.+. ||+.+.  ...+.++ .  ....++.++++++.+    . .+...+                          .
T Consensus         2 ~~~~~~-~c~~c~~~~~~~~~~-~--~~~~~~~~~~~~~~~----~-~~~~~~--------------------------~   46 (69)
T cd01659           2 VLFYAP-WCPFCQALRPVLAEL-A--LLNKGVKFEAVDVDE----D-PALEKE--------------------------L   46 (69)
T ss_pred             EEEECC-CChhHHhhhhHHHHH-H--hhCCCcEEEEEEcCC----C-hHHhhH--------------------------H
Confidence            567788 887654  3456665 2  234789999999732    1 111112                          4


Q ss_pred             HhhccCCceEEEEECCC
Q 046837          413 EEWKYSKKAIIVSVDPQ  429 (658)
Q Consensus       413 e~f~~~~iP~LVvL~pq  429 (658)
                      ..+++...|.+++.+++
T Consensus        47 ~~~~~~~~P~~~~~~~~   63 (69)
T cd01659          47 KRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             HhCCCccccEEEEEeCC
Confidence            45888899999999887

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PTZ00102 disulphide isomerase; Provisional

Probab=81.16  E-value=2.9  Score=46.21  Aligned_cols=70  Identities=17%  Similarity=0.116  Sum_probs=48.8

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +++.++++|-+. ||++|.  .+.+.++.++++.. ...|++..+ |-      ++                        
T Consensus        48 ~~~~~lv~f~a~-wC~~Ck~~~p~~~~~a~~~~~~-~~~i~~~~v-d~------~~------------------------   94 (477)
T PTZ00102         48 ENEIVLVKFYAP-WCGHCKRLAPEYKKAAKMLKEK-KSEIVLASV-DA------TE------------------------   94 (477)
T ss_pred             cCCcEEEEEECC-CCHHHHHhhHHHHHHHHHHHhc-CCcEEEEEE-EC------CC------------------------
Confidence            367899999999 998765  45577777776532 346888886 21      11                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCce
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRI  432 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv  432 (658)
                       -+.+.++|++++.|+++++.+.+.+
T Consensus        95 -~~~l~~~~~i~~~Pt~~~~~~g~~~  119 (477)
T PTZ00102         95 -EMELAQEFGVRGYPTIKFFNKGNPV  119 (477)
T ss_pred             -CHHHHHhcCCCcccEEEEEECCceE
Confidence             1235566999999999999876554

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=80.47  E-value=2.3  Score=40.14  Aligned_cols=72  Identities=11%  Similarity=0.165  Sum_probs=39.7

Q ss_pred             cccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCc
Q 046837          327 VLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQ  404 (658)
Q Consensus       327 ~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~  404 (658)
                      .+.++.-.|.|... |||.  .++|.|.++=+..   .+.++=+|+-       +++.+-.+.                 
T Consensus        38 ~~~~~~~ilvi~e~-WCgD~~~~vP~l~kiae~~---p~i~~~~i~r-------d~~~el~~~-----------------   89 (129)
T PF14595_consen   38 SIQKPYNILVITET-WCGDCARNVPVLAKIAEAN---PNIEVRIILR-------DENKELMDQ-----------------   89 (129)
T ss_dssp             T--S-EEEEEE--T-T-HHHHHHHHHHHHHHHH----TTEEEEEE-H-------HHHHHHTTT-----------------
T ss_pred             hcCCCcEEEEEECC-CchhHHHHHHHHHHHHHhC---CCCeEEEEEe-------cCChhHHHH-----------------
Confidence            45567788999999 9976  5678888887764   4677777774       223322221                 


Q ss_pred             HHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          405 PAVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       405 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                           |+.  .+.+.||++|++|.+|+++
T Consensus        90 -----~lt--~g~~~IP~~I~~d~~~~~l  111 (129)
T PF14595_consen   90 -----YLT--NGGRSIPTFIFLDKDGKEL  111 (129)
T ss_dssp             -----TTT---SS--SSEEEEE-TT--EE
T ss_pred             -----HHh--CCCeecCEEEEEcCCCCEe
Confidence                 111  5667799999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	658
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 80.3 bits (197), Expect = 1e-15
 Identities = 110/684 (16%), Positives = 217/684 (31%), Gaps = 199/684 (29%)

Query: 32  HEVDVRPILSIIEDIFRRATATPSNIDGVPNGKREHMDALHDNKSLAAFSTPEPLSDIIH 91
           H+   + ILS+ ED F        N D      ++  D        +  S  E +  II 
Sbjct: 14  HQYQYKDILSVFEDAFVD------NFDC-----KDVQDMPK-----SILSKEE-IDHII- 55

Query: 92  KICCEISCKGGGDALATTMALFKTLSSYSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSL 151
                       DA++ T+ LF TL S   +           +NY   +L++ + T+   
Sbjct: 56  ---------MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK--FLMSPIKTEQ-- 102

Query: 152 ANSVAVLKQLPEIPT-GY----DALK---PQFDELN-NLIGAMLDLTNCIVEFKQLPSRY 202
                  +Q P + T  Y    D L      F + N + +   L L   ++E +  P++ 
Sbjct: 103 -------RQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR--PAKN 152

Query: 203 ISNDG-----K---AMSMDQDH------YHAAYWTFRSIVACNSRILSFRGLYTPSTTHE 248
           +  DG     K   A+ +   +          +W            L+ +   +P T  E
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW------------LNLKNCNSPETVLE 200

Query: 249 LELSTLTYKV-----SNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRILGKHNRDNI- 302
           + L  L Y++     S    S N+  +I   + ++ ++ + K Y N + +L      N+ 
Sbjct: 201 M-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-----LNVQ 254

Query: 303 --KVLRAL-IYAEDLVDGETR---TTVQIHVLKKKHVLLLISRPDDISQEEIL-----FL 351
             K   A  +  + L+   TR    T  +      H+  L      ++ +E+      +L
Sbjct: 255 NAKAWNAFNLSCKILL--TTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYL 311

Query: 352 SNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKYV 411
               +DL           P     I                   SI+D      A     
Sbjct: 312 DCRPQDLPRE-VLTT--NPRRLSII-----------------AESIRDG----LATWDN- 346

Query: 412 KEEWKYS-----KKAIIVSVDPQGRILNQNAFHTLWIWGISAFP----FTAETEEALWKE 462
              WK+         I  S++       +  F  L +     FP            +W +
Sbjct: 347 ---WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-----FPPSAHIPTILLSLIWFD 398

Query: 463 KPW--TLELLVGDIDATILE-WMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGM 519
                 + ++      +++E   KE   I +     E               K ++    
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLE--------------LKVKLE--- 440

Query: 520 AYVGKKNAKKRLEEISSSITKTESSHIVIDATKMWFFW--------------ARLERMLY 565
               +    + + +  +     +S  ++      +F+                 L RM++
Sbjct: 441 ---NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

Query: 566 ----W---KLQHGMGKTQETARAKGTAAIDCMEKFHEW--QDDALRNGFIQALNNYLQK- 615
               +   K++H    T   A       +  ++ +  +   +D      + A+ ++L K 
Sbjct: 498 LDFRFLEQKIRH--DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555

Query: 616 ---IHPGKHCN--RLILAGVNGAI 634
              +   K+ +  R+ L   + AI
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 4e-08
 Identities = 57/479 (11%), Positives = 129/479 (26%), Gaps = 161/479 (33%)

Query: 21  KQVLANHAPAGHEVDVRP-----------------ILSIIEDIFRR-----------ATA 52
           K  +A      ++V  +                  +L +++ +  +           ++ 
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 53  TPSNIDGVPNGKREHM------------DALHDNKSLAAFSTPEPLSDIIHKICCEISCK 100
               I  +    R  +              + + K+  AF                +SCK
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF---------------NLSCK 267

Query: 101 GGGDALATT--MALFKTLSSYSW------DAKMVL----SLAAFA--VNYGEFWLVAQLC 146
                L TT    +   LS+ +          M L      +     ++     L  ++ 
Sbjct: 268 ----ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 147 TQNSLANSV--AVLKQLPEIPTGYDALKPQFDELNNLIGAMLD-LTNCIVEFKQLPSRYI 203
           T N    S+    ++        +       D+L  +I + L+ L     E++++   + 
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLEP--AEYRKM---F- 375

Query: 204 SNDGKAMSMDQDHYH------AAYWTF---------------RSIVACN--SRILSFRGL 240
                 +S+     H      +  W                  S+V        +S   +
Sbjct: 376 ----DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 241 YTPSTTHELELSTL------TYKVSNIHVSENLTKQIE--FWRQQI----DKIRQIKEYN 288
           Y            L       Y +     S++L       ++   I      I   +   
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 289 NLVRILGKHNRDNIKVLRA-LIYAEDLVDGETRTTVQIHVLK--KKHVLLLISRPDDISQ 345
               +       + + L   + +     +        +  LK  K ++       +D   
Sbjct: 492 LFRMVF-----LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-----CDNDPKY 541

Query: 346 EEIL-----FLSNMYKDLKESKECRIVWLPIVDGSIDRQQAL---------DKFKNLQK 390
           E ++     FL  + ++L  SK   ++           + AL         +  K +Q+
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLL-----------RIALMAEDEAIFEEAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	658
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.48
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.46
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.44
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.43
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.67
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.06
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.02
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.99
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.96
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.96
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.92
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	98.9
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.88
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.87
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.82
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.79
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.76
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.76
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.75
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.72
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.71
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.68
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	98.67
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	98.67
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.67
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.67
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	98.67
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.66
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.66
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.66
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.65
3me7_A	170	Putative uncharacterized protein; electron transfe	98.65
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.64
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.64
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.63
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.63
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.63
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.62
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.61
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.61
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.61
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.61
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.61
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.59
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.58
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.57
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.57
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.57
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.57
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.56
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.56
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	98.56
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	97.97
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.52
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.52
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.51
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.5
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.5
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.47
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.47
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	98.46
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.44
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.42
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.42
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.42
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.42
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.41
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.41
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.41
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.4
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.39
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.37
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.36
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.36
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	98.35
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.35
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	98.33
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.33
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.32
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.29
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.29
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.28
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.24
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	98.18
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.17
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.12
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.11
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.08
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	98.05
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	97.98
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	97.92
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	97.89
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	97.89
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	97.87
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	97.86
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	97.85
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	97.83
2l57_A	126	Uncharacterized protein; structural genomics, unkn	97.72
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	97.69
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	97.61
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	97.54
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	97.53
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	97.49
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	97.44
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	97.42
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	97.39
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	97.27
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	97.22
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	97.21
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	97.2
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	97.06
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	97.0
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	96.97
2kuc_A	130	Putative disulphide-isomerase; structural genomics	96.9
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	96.89
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	96.89
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	96.88
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	96.87
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	96.84
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	96.83
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	96.78
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	96.78
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	96.77
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	96.77
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	96.77
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	96.74
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	96.71
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	96.71
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	96.7
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	96.68
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	96.67
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	96.65
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	96.65
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	96.64
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	96.64
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	96.63
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	96.63
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	96.62
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	96.61
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	96.58
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	96.58
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.58
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	96.57
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	96.56
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	96.54
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	96.53
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	96.52
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	96.51
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	96.51
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	96.5
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	96.48
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	96.44
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	96.41
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	96.4
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	95.39
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	96.35
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	96.34
3ira_A	173	Conserved protein; methanosarcina mazei,structural	96.34
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	96.33
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	96.32
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	96.31
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	96.28
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	96.24
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	96.22
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	96.21
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	96.21
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	96.19
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	96.19
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	96.17
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	96.13
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	96.12
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	96.11
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	96.11
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	96.11
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	96.1
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	96.08
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	96.05
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	95.99
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	95.96
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	95.85
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	95.82
1mek_A	120	Protein disulfide isomerase; electron transport, r	95.8
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	95.67
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	95.44
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	95.39
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	95.25
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	95.23
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	95.18
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	95.13
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	94.96
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	94.82
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	94.74
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	94.67
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	94.57
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	94.39
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	94.17
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	94.12
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	94.02
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	93.06
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	93.98
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	93.97
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	93.3
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	93.07
2qsi_A	137	Putative hydrogenase expression/formation protein;	92.93
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	92.27
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	91.99
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	91.87
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	91.36
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	90.81
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	90.65
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	90.56
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	90.32
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	90.04
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	89.34
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	89.06
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	88.85
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	88.83
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	88.81
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	88.46
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	88.21
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	88.05
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	87.8
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	87.17
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	86.64
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	86.6
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	85.73
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	85.71
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	85.05
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	84.91
2lrt_A	152	Uncharacterized protein; structural genomics, thio	84.71
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	84.53
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	83.68
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	83.67
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	83.4
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	83.01
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	82.66
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	81.74
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	81.66
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	81.6
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	81.55
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	81.44
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	81.29
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	81.07
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	80.97
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	80.81
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	80.4
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	80.14

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.48  E-value=3.2e-13  Score=125.79  Aligned_cols=124  Identities=19%  Similarity=0.293  Sum_probs=105.0

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCce
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWY  395 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWy  395 (658)
                      .+| .+.++.++||.|+|+|.+. ||++  .+.+.|.++|++++.+.+++||.|+++       ++.+.+..+..+++|+
T Consensus        37 ~~g-~v~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d-------~~~~~~~~~~~~~~~~  107 (165)
T 3s9f_A           37 QAD-TADMDSLSGKTVFFYFSAS-WCPPCRGFTPQLVEFYEKHHDSKNFEIILASWD-------EEEDDFNAYYAKMPWL  107 (165)
T ss_dssp             TTE-EECSGGGTTSEEEEEEECT-TCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC-------CSHHHHHHHHTTCSSE
T ss_pred             CCC-cccHHHcCCCEEEEEEECC-cChhHHHHHHHHHHHHHHhccCCCeEEEEEecC-------CCHHHHHHHHHhCCCc
Confidence            456 8999999999999999999 9976  567789999999987679999999982       3667788999999999


Q ss_pred             eecCCCCCcHHHHHHHHHhhccCCceEEEEECCC-CceeccchHHHHHHh-CCccccCCh
Q 046837          396 SIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQ-GRILNQNAFHTLWIW-GISAFPFTA  453 (658)
Q Consensus       396 AVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pq-Gkv~~~nA~~mI~~w-G~~AFPFT~  453 (658)
                      .+|+..   ......+.+.|++.++|+++++|++ |+++..++.+.+..- ....||+..
T Consensus       108 ~~~~~~---~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~~~~~~d~~~~~fpw~~  164 (165)
T 3s9f_A          108 SIPFAN---RNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFPWRD  164 (165)
T ss_dssp             ECCTTC---HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCCC
T ss_pred             ccccCc---hhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccHHHHhhCcccccCCCCC
Confidence            999975   3344778889999999999999998 999999998877654 455688864

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.46  E-value=6.9e-13  Score=118.73  Aligned_cols=125  Identities=17%  Similarity=0.286  Sum_probs=106.0

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW  394 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW  394 (658)
                      ..+|+.+.++.++||.|+|+|.+. ||++|  +.+.|.++|++++.+.+++||.|+++       ++.+...++...++|
T Consensus        15 ~~~g~~~~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~~~~~~   86 (144)
T 1i5g_A           15 KGAAADIALPSLAGKTVFFYFSAS-WCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWD-------ESAEDFKDYYAKMPW   86 (144)
T ss_dssp             ETTEEEEEGGGGTTSEEEEEEECT-TCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC-------SSHHHHHHHHTTCSS
T ss_pred             cCCCCEecHHHcCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCC-------CCHHHHHHHHHhCCc
Confidence            346788999999999999999999 99765  57789999999976578999999982       366778888999999


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccCCceEEEEEC-CCCceeccchHHHHHHhCC-ccccCC
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVD-PQGRILNQNAFHTLWIWGI-SAFPFT  452 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~-pqGkv~~~nA~~mI~~wG~-~AFPFT  452 (658)
                      ..+|+..   ......+.+.|++.++|+++++| ++|+++..++...+..-+. ..||++
T Consensus        87 ~~~~~~~---~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~  143 (144)
T 1i5g_A           87 LALPFED---RKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWP  143 (144)
T ss_dssp             EECCTTC---HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred             cccccCc---hHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhhhhhCcccccCCCC
Confidence            9999863   23456778889999999999999 8999999999999988874 557764

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.44  E-value=1.3e-12  Score=116.39  Aligned_cols=125  Identities=15%  Similarity=0.246  Sum_probs=104.6

Q ss_pred             cCCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837          316 DGETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP  393 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP  393 (658)
                      ...+| .+.+++++||.|+|+|.+. ||++|  +.+.|.++|++++.+.+++||.|+++       ++.+.+.++...++
T Consensus        15 ~~~~g-~~~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d-------~~~~~~~~~~~~~~   85 (144)
T 1o73_A           15 LSKSG-EVSLGSLVGKTVFLYFSAS-WCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWD-------ENESDFHDYYGKMP   85 (144)
T ss_dssp             BCTTS-CBCSGGGTTCEEEEEEECT-TCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC-------SSHHHHHHHHTTCS
T ss_pred             ecCCC-cCcHHHhCCCEEEEEEECc-CCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCC-------CCHHHHHHHHHhCC
Confidence            34467 8999999999999999999 99765  56789999999976678999999982       35677889999999


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccCCceEEEEEC-CCCceeccchHHHHHHhCC-ccccCC
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVD-PQGRILNQNAFHTLWIWGI-SAFPFT  452 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~-pqGkv~~~nA~~mI~~wG~-~AFPFT  452 (658)
                      |+.+|+..   ......+.+.|++.++|+++++| ++|+++...+...+..-+. ..||+.
T Consensus        86 ~~~~~~~~---~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~W~  143 (144)
T 1o73_A           86 WLALPFDQ---RSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPWP  143 (144)
T ss_dssp             SEECCTTC---HHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred             ceEeeccc---hhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhhHHhhCCCccCCCCC
Confidence            99999863   23456778889999999999999 8999999999998887765 446663

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.43  E-value=1e-12  Score=118.19  Aligned_cols=124  Identities=19%  Similarity=0.301  Sum_probs=104.3

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCce
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWY  395 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWy  395 (658)
                      .+| .+.+++++||.|+|+|.+. ||++|  +.+.|.++|++++.+.+++||+|+++       ++++.++++...++|+
T Consensus        17 ~~g-~~~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~~~~~~~   87 (146)
T 1o8x_A           17 GDG-EVEVKSLAGKLVFFYFSAS-WCPPARGFTPQLIEFYDKFHESKNFEVVFCTWD-------EEEDGFAGYFAKMPWL   87 (146)
T ss_dssp             TTE-EEEGGGGTTCEEEEEEECT-TCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC-------CSHHHHHHHHTTCSSE
T ss_pred             CCC-CCcHHHhCCCEEEEEEEcc-CCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCC-------CCHHHHHHHHHHCCce
Confidence            456 8999999999999999999 99765  57789999999976568999999982       3667788999999999


Q ss_pred             eecCCCCCcHHHHHHHHHhhccCCceEEEEEC-CCCceeccchHHHHHHhCC-ccccCCh
Q 046837          396 SIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVD-PQGRILNQNAFHTLWIWGI-SAFPFTA  453 (658)
Q Consensus       396 AVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~-pqGkv~~~nA~~mI~~wG~-~AFPFT~  453 (658)
                      .+|+..   ......+.+.|++.++|+++++| ++|+++..++...+..-+. .+||+.+
T Consensus        88 ~~~~~~---~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~~  144 (146)
T 1o8x_A           88 AVPFAQ---SEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKD  144 (146)
T ss_dssp             ECCGGG---HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCC
T ss_pred             eeccch---hhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecchhHHhhCCccccCCCCC
Confidence            999852   23456778889999999999999 8999999999998877664 5677753

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.67  E-value=1.1e-11  Score=109.61  Aligned_cols=114  Identities=17%  Similarity=0.208  Sum_probs=90.1

Q ss_pred             CCCcEEeccc-ccCc-EEEEEEecCCCCChH--HHHHHHHHHHHhcCC-CCeeEEEEecccCCCcchhhHHHHHHhhc--
Q 046837          318 ETRTTVQIHV-LKKK-HVLLLISRPDDISQE--EILFLSNMYKDLKES-KECRIVWLPIVDGSIDRQQALDKFKNLQK--  390 (658)
Q Consensus       318 ~~~~kV~Is~-L~gK-~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~-~~fEIVwIpivD~s~~W~dde~~F~~~~~--  390 (658)
                      .+|+.+.+++ ++|| .|+|+|.+. ||++|  +.+.|.++|+++++. .+++||.|++.+       +.+...++..  
T Consensus        12 ~~g~~~~l~~~~~gk~~vll~F~a~-wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~-------~~~~~~~~~~~~   83 (143)
T 2lus_A           12 KNRCEVNANEALKDKDIIGFYFSAH-WCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDR-------SEDDMFQYMMES   83 (143)
Confidence            4677899999 9999 999999999 99765  577899999998754 689999999842       3333444443  


Q ss_pred             CCCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccchHHHHHH
Q 046837          391 RMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWI  443 (658)
Q Consensus       391 ~MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~  443 (658)
                      ..||..+|+.+    ...+.+.+.|++.++|+++++|++|+++..++...+..
T Consensus        84 ~~~~~~~~~~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~  132 (143)
T 2lus_A           84 HGDWLAIPYRS----GPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQS  132 (143)
Confidence            44899988855    34456777899999999999999999999888876553

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.06  E-value=5.6e-10  Score=101.94  Aligned_cols=106  Identities=14%  Similarity=0.199  Sum_probs=83.9

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW  394 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW  394 (658)
                      ..+|+.+.+++++||.|+|+|.+. ||++|  +++.|.++|++++.. +++||.|++++       .++..+.+...+||
T Consensus        22 ~~~G~~~~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~-~~~vv~i~~d~-------~~~~~~~~~~~~~~   92 (152)
T 2lrt_A           22 DLKGNTRSLTDLKGKVVLIDFTVY-NNAMSAAHNLALRELYNKYASQ-GFEIYQISLDG-------DEHFWKTSADNLPW   92 (152)
T ss_dssp             BTTSCEECTTTGGGSEEEEEEECT-TCHHHHHHHHHHHHHHHHHGGG-TEEEEEEECSC-------CHHHHHHHHTTCSS
T ss_pred             cCCCCEEeHHHhCCCEEEEEEEcC-CChhhHHHHHHHHHHHHHhccC-CeEEEEEEccC-------CHHHHHHHHhCCCc
Confidence            457788999999999999999999 99765  577899999998743 79999999832       34445566667999


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      ..+.-++    .....+.+.|++.+.|+.+++|++|+++..
T Consensus        93 ~~~~d~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  129 (152)
T 2lrt_A           93 VCVRDAN----GAYSSYISLYNVTNLPSVFLVNRNNELSAR  129 (152)
T ss_dssp             EEEECSS----GGGCHHHHHHTCCSCSEEEEEETTTEEEEE
T ss_pred             eEEECCC----CcchHHHHHcCcccCceEEEECCCCeEEEe
Confidence            8876544    112235567999999999999999999865

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.02  E-value=4.4e-10  Score=100.40  Aligned_cols=106  Identities=14%  Similarity=0.164  Sum_probs=82.2

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHH---HHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcC
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSN---MYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKR  391 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~---iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~  391 (658)
                      ..+|+.+.++.++||.|+|+|-+. ||++|  +++.|.+   +|++.+. .+++||.|+.+       ++.+.+..+...
T Consensus        18 ~~~g~~~~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~~~~l~~~~~~-~~~~vi~i~~d-------~~~~~~~~~~~~   88 (142)
T 3eur_A           18 LDSGVKGTLYQFPAEYTLLFINNP-GCHACAEMIEGLKASPVINGFTAA-KKLKVLSIYPD-------EELDEWKKHRND   88 (142)
T ss_dssp             ETTSCEEETTTCCCSEEEEEECCS-SSHHHHHHHHHHHHCHHHHHHHHT-TSEEEEEEECS-------SCHHHHHHHGGG
T ss_pred             cCCCCEeeHHHcCCCEEEEEEECC-CCccHHHHHHHHhhhHHHHHHhcc-CCeEEEEEEcC-------CCHHHHHHHHHh
Confidence            356788999999999999999999 99764  6778999   9999874 68999999973       244455554444


Q ss_pred             C--CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccc
Q 046837          392 M--PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       392 M--PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~n  436 (658)
                      +  +|..+.-+     .....+.+.|++.++|+++++|++|+++..+
T Consensus        89 ~~~~~~~~~d~-----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  130 (142)
T 3eur_A           89 FAKEWTNGYDK-----ELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD  130 (142)
T ss_dssp             SCTTSEEEECT-----TCHHHHTTCSCCTTCSEEEEECTTCBEEEEE
T ss_pred             cccccccccCc-----cchhhhhhhcCCCcCCeEEEECCCCcEEecC
Confidence            4  56654433     3334467789999999999999999999765

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.99  E-value=5.8e-10  Score=99.76  Aligned_cols=109  Identities=8%  Similarity=0.067  Sum_probs=77.1

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW  394 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW  394 (658)
                      ..+|+.+.++.++||.|+|+|.+. ||++  .+++.|.++|++.+.+ +++||.|++++.    .+.-.+|-+ ...++|
T Consensus        19 ~~~g~~~~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~----~~~~~~~~~-~~~~~~   91 (143)
T 4fo5_A           19 LGNDAKASFHNQLGRYTLLNFWAA-YDAESRARNVQLANEVNKFGPD-KIAMCSISMDEK----ESIFTETVK-IDKLDL   91 (143)
T ss_dssp             -----CCCSCCSSCCEEEEEEECT-TCHHHHHHHHHHHHHHTTSCTT-TEEEEEEECCSC----HHHHHHHHH-HHTCCG
T ss_pred             cCCCCEEEHHHhCCCEEEEEEEcC-cCHHHHHHHHHHHHHHHHhCcC-CEEEEEEEccCC----HHHHHHHHH-HhCCCC
Confidence            356778999999999999999999 9976  4567899999998643 799999998421    112233332 346888


Q ss_pred             -eeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccc
Q 046837          395 -YSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       395 -yAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~n  436 (658)
                       ..+..+.    .....+.+.|++.++|+.+++|++|+++..+
T Consensus        92 ~~~~~d~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  130 (143)
T 4fo5_A           92 STQFHEGL----GKESELYKKYDLRKGFKNFLINDEGVIIAAN  130 (143)
T ss_dssp             GGEEECTT----GGGSHHHHHTTGGGCCCEEEECTTSBEEEES
T ss_pred             ceeeeccc----ccchHHHHHcCCCCCCcEEEECCCCEEEEcc
Confidence             4444332    1123456679999999999999999998754

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.96  E-value=6.6e-09  Score=93.80  Aligned_cols=109  Identities=21%  Similarity=0.223  Sum_probs=82.6

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW  394 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW  394 (658)
                      ..+|+.+.+++++||.|+|+|.+. ||++|  +.+.|.++|++++. .+++||.|++++.    .+.-.+|-.- ..+||
T Consensus        16 ~~~G~~~~l~~~~gk~vll~F~a~-~C~~C~~~~~~l~~l~~~~~~-~~~~vv~v~~d~~----~~~~~~~~~~-~~~~~   88 (152)
T 2lrn_A           16 DLKGNSVSLNDFKGKYVLVDFWFA-GCSWCRKETPYLLKTYNAFKD-KGFTIYGVSTDRR----EEDWKKAIEE-DKSYW   88 (152)
T ss_dssp             CSSSCEEESGGGTTSEEEEEEECT-TCTTHHHHHHHHHHHHHHHTT-TTEEEEEEECCSC----HHHHHHHHHH-HTCCS
T ss_pred             cCCCCEEeHHHcCCCEEEEEEECC-CChhHHHHHHHHHHHHHHhcc-CCeEEEEEEccCC----HHHHHHHHHH-hCCCC
Confidence            346788999999999999999999 99875  56779999999863 4699999998431    1122334332 36788


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccc
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~n  436 (658)
                      ..+..+.    .....+.+.|++.+.|+++++|++|+++...
T Consensus        89 ~~~~d~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  126 (152)
T 2lrn_A           89 NQVLLQK----DDVKDVLESYCIVGFPHIILVDPEGKIVAKE  126 (152)
T ss_dssp             EEEEECH----HHHHHHHHHTTCCSSCEEEEECTTSEEEEEC
T ss_pred             eEEeccc----chhHHHHHHhCCCcCCeEEEECCCCeEEEee
Confidence            7665432    2346677889999999999999999998764

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.96  E-value=4.1e-09  Score=94.95  Aligned_cols=108  Identities=16%  Similarity=0.226  Sum_probs=82.6

Q ss_pred             CCCCcEEecc--cccCcEEEEEEecCCCCCh--H--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh-
Q 046837          317 GETRTTVQIH--VLKKKHVLLLISRPDDISQ--E--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ-  389 (658)
Q Consensus       317 g~~~~kV~Is--~L~gK~VlLyfSa~~~~~~--~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~-  389 (658)
                      ..+|+.+.++  .++||.|+|+|-+. ||++  |  +++.|.++|++++.+.+++||.|++++       +.+...++. 
T Consensus        18 ~~~g~~~~l~~~~~~gk~vll~F~a~-~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~-------~~~~~~~~~~   89 (150)
T 3fw2_A           18 NAKGEKITRSSDAFKQKSLLINFWAS-WNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDV-------DKQQWKDAIK   89 (150)
T ss_dssp             BTTCCEECTTSTTTTTSEEEEEEECT-TCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCS-------CHHHHHHHHH
T ss_pred             CCCCCEEecchhhhCCCEEEEEEEeC-CCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCC-------CHHHHHHHHH
Confidence            3577889999  99999999999999 9988  6  466799999999445679999999843       223333322 


Q ss_pred             -cCCCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccc
Q 046837          390 -KRMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       390 -~~MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~n  436 (658)
                       ..+||..+.-+.    .....+.+.|++.+.|+++++|++|+++...
T Consensus        90 ~~~~~~~~~~d~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  133 (150)
T 3fw2_A           90 RDTLDWEQVCDFG----GLNSEVAKQYSIYKIPANILLSSDGKILAKN  133 (150)
T ss_dssp             HTTCCSEEECCSC----GGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred             HhCCCceEEEcCc----ccchHHHHHcCCCccCeEEEECCCCEEEEcc
Confidence             366887765542    1123556679999999999999999998765

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.92  E-value=1.3e-08  Score=92.05  Aligned_cols=111  Identities=9%  Similarity=0.136  Sum_probs=84.5

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCCh-H--HHHHHHHHHHHhcCC---CCeeEEEEecccCCCcchhhHHHHHHhhcC
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQ-E--EILFLSNMYKDLKES---KECRIVWLPIVDGSIDRQQALDKFKNLQKR  391 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~-~--~~~~L~~iY~~lk~~---~~fEIVwIpivD~s~~W~dde~~F~~~~~~  391 (658)
                      .+|+.+.+++++||.|+|+|.+. ||++ |  +++.|.++|++++..   .+++||+|++++..+.. +.-++|-+-+ .
T Consensus        11 ~~G~~~~l~~~~gk~vll~f~~~-~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~-~~~~~~~~~~-~   87 (164)
T 2ggt_A           11 HTGERKTDKDYLGQWLLIYFGFT-HCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTK-EAIANYVKEF-S   87 (164)
T ss_dssp             TTSCEEEGGGGTTCEEEEEEECT-TCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCH-HHHHHHHHTT-C
T ss_pred             CCCCEEeHHHcCCCEEEEEEEeC-CCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCH-HHHHHHHHHc-C
Confidence            46788999999999999999999 9986 6  567899999998652   58999999984311111 1344455433 4


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhccCCce---------------EEEEECCCCceecc
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKYSKKA---------------IIVSVDPQGRILNQ  435 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~~~iP---------------~LVvL~pqGkv~~~  435 (658)
                      ++|..+.-    +......+.+.|++...|               ..+++||+|+++..
T Consensus        88 ~~~~~l~~----~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~  142 (164)
T 2ggt_A           88 PKLVGLTG----TREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY  142 (164)
T ss_dssp             SSCEEEEC----CHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEE
T ss_pred             CCeEEEeC----CHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEE
Confidence            68877754    235566778889999999               89999999999864

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=98.90  E-value=2.4e-09  Score=95.00  Aligned_cols=104  Identities=12%  Similarity=0.115  Sum_probs=76.3

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHH---HHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcC
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSN---MYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKR  391 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~---iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~  391 (658)
                      ..+|+.+.++.++||.|+|+|.+. ||++|  +++.|.+   +|++.+. .+++||.|++++       +.+...++...
T Consensus        14 ~~~g~~~~l~~~~gk~vll~F~a~-~C~~C~~~~~~l~~~~~l~~~~~~-~~~~~v~v~~d~-------~~~~~~~~~~~   84 (142)
T 3ewl_A           14 TVHGDNSRMSRLKAQYTMLFFYDP-DCSNCRKFEKLFAEIPAFVEMVEN-GTLRVLAIYPDE-------NREEWATKAVY   84 (142)
T ss_dssp             CTTCCEEEGGGCCCSEEEEEECCS-SCHHHHHHHHHHHTCHHHHHHHHH-TSEEEEEEECSS-------CHHHHHHHHTT
T ss_pred             CCCCCEEEhhhcCCCEEEEEEECC-CCccHHHHHHHHHHhHHHHHHhcc-CCeEEEEEEecC-------CHHHHHHHHHH
Confidence            456788999999999999999999 99765  5566777   8888763 569999999832       33344444443


Q ss_pred             --CCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          392 --MPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       392 --MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ++|..+.-++     ..-...+.|++.+.|+++++|++|+++.
T Consensus        85 ~~~~~~~~~d~~-----~~~~~~~~~~v~~~P~~~lid~~G~i~~  124 (142)
T 3ewl_A           85 MPQGWIVGWNKA-----GDIRTRQLYDIRATPTIYLLDGRKRVIL  124 (142)
T ss_dssp             SCTTCEEEECTT-----CHHHHTTCSCCCSSSEEEEECTTCBEEE
T ss_pred             cCCCcceeeCCc-----cchhhHHHcCCCCCCeEEEECCCCCEEe
Confidence              4555544332     2212244799999999999999999986

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.88  E-value=9.2e-09  Score=92.76  Aligned_cols=105  Identities=12%  Similarity=0.101  Sum_probs=79.7

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCce
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWY  395 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWy  395 (658)
                      .+|+.+.+++++||.|+|+|.+. ||++|  +.+.|.++|++++ ..+++||.|++++     .++-.+|-+- ..++|.
T Consensus        12 ~~G~~~~l~~~~gk~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~-~~~v~vv~v~~d~-----~~~~~~~~~~-~~~~~~   83 (151)
T 3raz_A           12 KDNTPQSLQSLKAPVRIVNLWAT-WCGPCRKEMPAMSKWYKAQK-KGSVDMVGIALDT-----SDNIGNFLKQ-TPVSYP   83 (151)
T ss_dssp             TTCCEECGGGCCSSEEEEEEECT-TCHHHHHHHHHHHHHHHTSC-TTTEEEEEEESSC-----HHHHHHHHHH-SCCSSC
T ss_pred             cCCCEecHHHhCCCEEEEEEEcC-cCHHHHHHHHHHHHHHHHhc-cCCeEEEEEECCC-----hHHHHHHHHH-cCCCCc
Confidence            57889999999999999999999 99764  5778999999984 4689999999832     1244445432 345555


Q ss_pred             eecCCCCCcHHHHHHHHHhhc--cCCceEEEEECCCCceec
Q 046837          396 SIQDPAMIQPAVIKYVKEEWK--YSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       396 AVpf~~~i~~~~~r~ike~f~--~~~iP~LVvL~pqGkv~~  434 (658)
                      .+...+    ...+.+.+.|+  +.++|+.+++|++|+++.
T Consensus        84 ~~~~~~----~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~  120 (151)
T 3raz_A           84 IWRYTG----ANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQ  120 (151)
T ss_dssp             EEEECC----SCHHHHHHTTTCCSCCSSEEEEEETTTTEEE
T ss_pred             eEecCc----cchHHHHHHhCCccCCCCEEEEECCCCcEEE
Confidence            554433    23455677799  999999999999999864

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.87  E-value=1.1e-08  Score=90.38  Aligned_cols=110  Identities=14%  Similarity=0.216  Sum_probs=81.8

Q ss_pred             CCCCcEEecc--cccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837          317 GETRTTVQIH--VLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM  392 (658)
Q Consensus       317 g~~~~kV~Is--~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M  392 (658)
                      ..+|+.+.++  .++||.|+|+|.+. ||++  .+.+.|.+++++++.+.+++||.|++.+.    .+.-.+|-. ...+
T Consensus        18 ~~~g~~~~l~~~~~~gk~vll~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~----~~~~~~~~~-~~~~   91 (148)
T 3fkf_A           18 NEKGEKLSRSAERFRNRYLLLNFWAS-WCDPQPEANAELKRLNKEYKKNKNFAMLGISLDID----REAWETAIK-KDTL   91 (148)
T ss_dssp             BTTSCEECTTSTTTTTSEEEEEEECG-GGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSC----HHHHHHHHH-HTTC
T ss_pred             CCCCCEEeccccccCCcEEEEEEECC-CCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCC----HHHHHHHHH-HcCC
Confidence            4577889999  99999999999999 9965  56778999999985456799999998421    112233332 2456


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccc
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~n  436 (658)
                      +|..+..+.    .....+.+.|++.+.|+++++|++|+++...
T Consensus        92 ~~~~~~d~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  131 (148)
T 3fkf_A           92 SWDQVCDFT----GLSSETAKQYAILTLPTNILLSPTGKILARD  131 (148)
T ss_dssp             CSEEECCSC----GGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred             CceEEEccC----CcchHHHHhcCCCCcCEEEEECCCCeEEEec
Confidence            777765542    1133556679999999999999999998654

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.82  E-value=4.6e-08  Score=89.27  Aligned_cols=111  Identities=11%  Similarity=0.150  Sum_probs=83.1

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCCh-H--HHHHHHHHHHHhcC---CCCeeEEEEecccCCCcchhhHHHHHHhhcC
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQ-E--EILFLSNMYKDLKE---SKECRIVWLPIVDGSIDRQQALDKFKNLQKR  391 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~-~--~~~~L~~iY~~lk~---~~~fEIVwIpivD~s~~W~dde~~F~~~~~~  391 (658)
                      .+|+.+.++.++||.|+|+|.+. ||++ |  +++.|.++|++++.   ..+++||+|+++... +-.+.-++|-+-+ .
T Consensus        14 ~~G~~~~l~~~~gk~vll~F~~~-~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~-d~~~~~~~~~~~~-~   90 (171)
T 2rli_A           14 HRGRARCKADFRGQWVLMYFGFT-HCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPER-DDVEAMARYVQDF-H   90 (171)
T ss_dssp             TTSCEEETTTTTTSEEEEEEECT-TCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTT-CCHHHHHHHHHTT-C
T ss_pred             CCCCEEeHHHhCCCEEEEEEEcC-CCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCC-CCHHHHHHHHHHc-C
Confidence            46788999999999999999999 9986 5  56789999999864   368999999984210 0011334454433 4


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhccCCce---------------EEEEECCCCceecc
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKYSKKA---------------IIVSVDPQGRILNQ  435 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~~~iP---------------~LVvL~pqGkv~~~  435 (658)
                      .+|..+.-+    ....+.+.+.|++...|               +.+++|++|+++..
T Consensus        91 ~~~~~l~~~----~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~  145 (171)
T 2rli_A           91 PRLLGLTGS----TKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY  145 (171)
T ss_dssp             TTCCEEECC----HHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEE
T ss_pred             CCeEEEeCC----HHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEE
Confidence            677666542    34556677889999998               99999999999864

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.79  E-value=2.4e-09  Score=94.64  Aligned_cols=107  Identities=13%  Similarity=0.168  Sum_probs=78.0

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC-
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP-  393 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP-  393 (658)
                      ..+|+.+.++.++||.|+|+|.+. ||++  .+.+.|.++|++++.+ ++++|.|++.+..    +.-.+|-.-+ .++ 
T Consensus        18 ~~~g~~~~l~~~~gk~vll~f~~~-~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~----~~~~~~~~~~-~~~~   90 (148)
T 3hcz_A           18 DTTGTYRYLYDVQAKYTILFFWDS-QCGHCQQETPKLYDWWLKNRAK-GIQVYAANIERKD----EEWLKFIRSK-KIGG   90 (148)
T ss_dssp             CTTSCBCCGGGCCCSEEEEEEECG-GGCTTCSHHHHHHHHHHHHGGG-TEEEEEEECCSSS----HHHHHHHHHH-TCTT
T ss_pred             cCCCCEEEhHHcCCCEEEEEEECC-CCccHHHHHHHHHHHHHHhccC-CEEEEEEEecCCH----HHHHHHHHHc-CCCC
Confidence            356788999999999999999999 9976  4677899999998743 6999999984311    1333343322 345 


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      |..+.-++     ....+.+.|++.+.|+++++|++|+++..
T Consensus        91 ~~~~~d~~-----~~~~~~~~~~i~~~P~~~lid~~G~i~~~  127 (148)
T 3hcz_A           91 WLNVRDSK-----NHTDFKITYDIYATPVLYVLDKNKVIIAK  127 (148)
T ss_dssp             SEEEECTT-----CCCCHHHHHCCCSSCEEEEECTTCBEEEE
T ss_pred             ceEEeccc-----cchhHHHhcCcCCCCEEEEECCCCcEEEe
Confidence            54443322     22235667999999999999999999864

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.76  E-value=5.9e-08  Score=86.70  Aligned_cols=106  Identities=13%  Similarity=0.168  Sum_probs=79.4

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW  394 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW  394 (658)
                      ..+|+.+.+++++||.|+|+|.+. ||++|  +.+.|.++|++.+ +.++.+|.|+..+.    .+.-++|-. ...++|
T Consensus        17 ~~~g~~~~l~~~~gk~~lv~f~~~-~C~~C~~~~~~l~~l~~~~~-~~~~~~v~v~~d~~----~~~~~~~~~-~~~~~~   89 (152)
T 2lja_A           17 DINGKTVSLADLKGKYIYIDVWAT-WCGPCRGELPALKELEEKYA-GKDIHFVSLSCDKN----KKAWENMVT-KDQLKG   89 (152)
T ss_dssp             ETTTEEEESTTTTTSEEEEEECCS-SCCGGGGTHHHHHHHHHHST-TSSEEEEEEECCSC----HHHHHHHHH-HHTCCS
T ss_pred             cCCCCEeeHHHcCCCEEEEEEECC-cCHhHHHHhHHHHHHHHHhc-cCCeEEEEEEccCc----HHHHHHHHH-hcCCCC
Confidence            356788999999999999999999 99765  5677999999875 35799999997421    112233433 236788


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      +.+....  +    ..+.+.|++.+.|+++++|++|+++..
T Consensus        90 ~~~~~d~--~----~~~~~~~~v~~~P~~~lid~~G~i~~~  124 (152)
T 2lja_A           90 IQLHMGT--D----RTFMDAYLINGIPRFILLDRDGKIISA  124 (152)
T ss_dssp             EEEECSS--C----THHHHHTTCCSSCCEEEECTTSCEEES
T ss_pred             ceeecCc--c----hhHHHHcCcCCCCEEEEECCCCeEEEc
Confidence            7766543  2    235566999999999999999999864

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.76  E-value=2e-08  Score=89.74  Aligned_cols=103  Identities=14%  Similarity=0.082  Sum_probs=75.3

Q ss_pred             CCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCcee
Q 046837          319 TRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYS  396 (658)
Q Consensus       319 ~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyA  396 (658)
                      +|..+.++.++||.|+|+|.+. ||+.|  +.+.|.++|++++.. +++||.|++.+.    .++-.+|-+- ...+|..
T Consensus        17 ~g~~~~l~~~~gk~vll~f~~~-~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~----~~~~~~~~~~-~~~~~~~   89 (152)
T 3gl3_A           17 KTGVVKLSDKTGSVVYLDFWAS-WCGPCRQSFPWMNQMQAKYKAK-GFQVVAVNLDAK----TGDAMKFLAQ-VPAEFTV   89 (152)
T ss_dssp             SSSEEEGGGGTTSEEEEEEECT-TCTHHHHHHHHHHHHHHHHGGG-TEEEEEEECCSS----HHHHHHHHHH-SCCCSEE
T ss_pred             CCCeEeHHHhCCCEEEEEEECC-cCHHHHHHHHHHHHHHHHhhcC-CeEEEEEECCCC----HHHHHHHHHH-cCCCCce
Confidence            6778999999999999999999 99865  466799999998643 599999998421    1233333322 2345544


Q ss_pred             ecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          397 IQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       397 Vpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      +.-++       ..+.+.|++.+.|+++++|++|+++..
T Consensus        90 ~~d~~-------~~~~~~~~v~~~P~~~lid~~G~i~~~  121 (152)
T 3gl3_A           90 AFDPK-------GQTPRLYGVKGMPTSFLIDRNGKVLLQ  121 (152)
T ss_dssp             EECTT-------CHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred             eECCc-------chhHHHcCCCCCCeEEEECCCCCEEEE
Confidence            43322       235677999999999999999999754

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.75  E-value=2.6e-08  Score=85.81  Aligned_cols=110  Identities=15%  Similarity=0.159  Sum_probs=77.4

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW  394 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW  394 (658)
                      ..+|+.+.++.++||.|+|+|.+. ||++|  +.+.|.+++++.  ..++.+|.|...+.  .-+++.+....+....++
T Consensus         9 ~~~g~~~~l~~~~gk~~lv~f~~~-~C~~C~~~~~~l~~~~~~~--~~~~~~v~i~~~~~--~~~~~~~~~~~~~~~~~~   83 (138)
T 4evm_A            9 GVDGKTYRLSDYKGKKVYLKFWAS-WCSICLASLPDTDEIAKEA--GDDYVVLTVVSPGH--KGEQSEADFKNWYKGLDY   83 (138)
T ss_dssp             BTTSCEEEGGGGTTSEEEEEECCT-TCHHHHHHHHHHHHHHHTC--TTTEEEEEEECTTS--TTCCCHHHHHHHHTTCCC
T ss_pred             CCCCCEEEHHHhCCCEEEEEEEcC-cCHHHHHHHHHHHHHHHHh--CCCcEEEEEEcCCC--CchhhHHHHHHHHhhcCC
Confidence            347788999999999999999999 99765  566799999883  46788888843221  112355666666666554


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      ...|.-  .+.  ...+.+.|++.+.|+++++|++|+++..
T Consensus        84 ~~~~~~--~d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~  120 (138)
T 4evm_A           84 KNLPVL--VDP--SGKLLETYGVRSYPTQAFIDKEGKLVKT  120 (138)
T ss_dssp             TTCCEE--ECT--TCHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred             CCeeEE--ECc--chHHHHHcCcccCCeEEEECCCCcEEEe
Confidence            222221  111  1245667999999999999999999753

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.72  E-value=1.3e-07  Score=85.99  Aligned_cols=117  Identities=16%  Similarity=0.149  Sum_probs=77.2

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccC--CCcchh-hHHHH--HHhh
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDG--SIDRQQ-ALDKF--KNLQ  389 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~--s~~W~d-de~~F--~~~~  389 (658)
                      ..+|+.+.+++++||.|+|+|.+. ||++|  +++.|.++|++++. .+++||.|++++.  ...++. .-.+|  +.+.
T Consensus        18 ~~~G~~~~l~~~~gk~vlv~f~a~-~C~~C~~~~~~l~~l~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~   95 (169)
T 2v1m_A           18 DINGVDVSLEKYRGHVCLIVNVAC-KCGATDKNYRQLQEMHTRLVG-KGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYG   95 (169)
T ss_dssp             BTTSCEEEGGGGTTSEEEEEEECS-SSTTHHHHHHHHHHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHC
T ss_pred             cCCCCCccHHHcCCCEEEEEEeec-cCCchHHHHHHHHHHHHHhhc-CCeEEEEEECCccCCCCCCCHHHHHHHHHHhcC
Confidence            356788999999999999999999 99865  67789999999874 4699999998420  011222 44556  4443


Q ss_pred             cCCCcee-ecCCCCCcHHHHHHHHHh-hc-----cCCceEEEEECCCCceecc
Q 046837          390 KRMPWYS-IQDPAMIQPAVIKYVKEE-WK-----YSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       390 ~~MPWyA-Vpf~~~i~~~~~r~ike~-f~-----~~~iP~LVvL~pqGkv~~~  435 (658)
                      -..|.++ +........+..+++++. ++     ++.+|..+++|++|+++..
T Consensus        96 ~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~  148 (169)
T 2v1m_A           96 VQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKR  148 (169)
T ss_dssp             CCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEE
T ss_pred             CCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEE
Confidence            3333332 111111111234555433 24     5567999999999999864

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.71  E-value=3.2e-08  Score=88.77  Aligned_cols=105  Identities=18%  Similarity=0.291  Sum_probs=76.0

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW  394 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW  394 (658)
                      ..+|+.+.++.++||.|+|+|.+. ||++|  +.+.|.+++++++. .+++||.|++.+.    .+.-++|-.-+ .++|
T Consensus        13 ~~~g~~~~l~~~~gk~vlv~F~~~-~C~~C~~~~~~l~~~~~~~~~-~~v~vv~v~~d~~----~~~~~~~~~~~-~~~~   85 (151)
T 2f9s_A           13 DTNGKRIELSDLKGKGVFLNFWGT-WCEPCKKEFPYMANQYKHFKS-QGVEIVAVNVGES----KIAVHNFMKSY-GVNF   85 (151)
T ss_dssp             CTTCCEEEGGGGTTSEEEEEEECT-TCHHHHHHHHHHHHHHHHHGG-GTEEEEEEEESCC----HHHHHHHHHHH-TCCS
T ss_pred             cCCCCEEEHHHcCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHhcc-CCeEEEEEECCCC----HHHHHHHHHHc-CCCc
Confidence            346788999999999999999999 99765  56779999998863 4799999998431    12333343322 3454


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      ..+.-++       ..+.+.|++.+.|+++++|++|+++..
T Consensus        86 ~~~~d~~-------~~~~~~~~v~~~P~~~lid~~G~i~~~  119 (151)
T 2f9s_A           86 PVVLDTD-------RQVLDAYDVSPLPTTFLINPEGKVVKV  119 (151)
T ss_dssp             CEEEETT-------SHHHHHTTCCSSCEEEEECTTSEEEEE
T ss_pred             eEEECCc-------hHHHHhcCCCCCCeEEEECCCCcEEEE
Confidence            4332221       234566999999999999999999764

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.68  E-value=1.8e-07  Score=85.10  Aligned_cols=117  Identities=13%  Similarity=0.303  Sum_probs=77.7

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCC-cc-hh-hHHHHHH--hh
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSI-DR-QQ-ALDKFKN--LQ  389 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~-~W-~d-de~~F~~--~~  389 (658)
                      ..+|+.+.+++++||.|+|+|.+. ||++|  +++.|.++|++++.+ +++||.|++++... +. +. .-.+|-.  +.
T Consensus        19 ~~~g~~~~l~~~~gk~vll~f~a~-~C~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~   96 (170)
T 2p5q_A           19 DAKENDVDLSIFKGKVLLIVNVAS-KCGMTNSNYAEMNQLYEKYKDQ-GLEILAFPCNQFGEEEPGTNDQITDFVCTRFK   96 (170)
T ss_dssp             BTTSCEEEGGGGTTSEEEEEEECS-SSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCTTTTCCCSCHHHHHHHHHHHTC
T ss_pred             cCCCCEecHHHhCCCEEEEEEEec-cCCccHHHHHHHHHHHHHhccC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHhcC
Confidence            356788999999999999999999 99875  577899999998743 69999999842000 00 12 3344433  23


Q ss_pred             cCCCcee-ecCCCCCcHHHHHHHH-Hhhcc--CCce---EEEEECCCCceecc
Q 046837          390 KRMPWYS-IQDPAMIQPAVIKYVK-EEWKY--SKKA---IIVSVDPQGRILNQ  435 (658)
Q Consensus       390 ~~MPWyA-Vpf~~~i~~~~~r~ik-e~f~~--~~iP---~LVvL~pqGkv~~~  435 (658)
                      -..|++. +.-......+..+++. +.+++  .++|   +.+++|++|+++..
T Consensus        97 ~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~  149 (170)
T 2p5q_A           97 SEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDR  149 (170)
T ss_dssp             CCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEE
T ss_pred             CCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEe
Confidence            3345443 1111111123444444 34566  7899   99999999999865

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=98.67  E-value=3.9e-08  Score=88.97  Aligned_cols=108  Identities=8%  Similarity=0.015  Sum_probs=79.2

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc-
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW-  394 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW-  394 (658)
                      .+|+.+.++.++||.|+|+|.+. ||++|  +.+.|.++|++++. .+++||.|++.+...  .+..+.+..+...+.| 
T Consensus        26 ~~g~~~~~~~~~gk~vlv~F~a~-~C~~C~~~~~~l~~l~~~~~~-~~~~vv~v~~~~~~~--~~~~~~~~~~~~~~~~~  101 (164)
T 2h30_A           26 ADNRPASVYLKKDKPTLIKFWAS-WCPLCLSELGQAEKWAQDAKF-SSANLITVASPGFLH--EKKDGEFQKWYAGLNYP  101 (164)
T ss_dssp             TTSSBGGGGCCTTSCEEEEECCT-TCHHHHHHHHHHHHHHTCGGG-TTSEEEEEECTTSTT--CCCTTHHHHHHTTSCCT
T ss_pred             CCCCEeeHHHhCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHccc-CCcEEEEEEcCCCcc--ccCHHHHHHHHHhCCCC
Confidence            35677999999999999999999 99765  56789999998864 469999999842110  1244567766665544 


Q ss_pred             -eeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          395 -YSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       395 -yAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                       +.+....      ...+.+.|++.++|+++++|++|+++..
T Consensus       102 ~~~~~~d~------~~~~~~~~~v~~~P~~~lid~~G~i~~~  137 (164)
T 2h30_A          102 KLPVVTDN------GGTIAQNLNISVYPSWALIGKDGDVQRI  137 (164)
T ss_dssp             TSCEEECT------TCHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred             cceEEEcC------chHHHHHcCCCccceEEEECCCCcEEEE
Confidence             4443322      2245567999999999999999998753

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.67  E-value=3.7e-08  Score=85.76  Aligned_cols=101  Identities=13%  Similarity=0.070  Sum_probs=74.9

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW  394 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW  394 (658)
                      ..+|+.+.++.++||.|+|+|.+. ||++|  +.+.|.+++++.+   +++++.|++.+.    .++-++|-.- ..++|
T Consensus        11 ~~~g~~~~l~~~~~k~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~----~~~~~~~~~~-~~~~~   81 (136)
T 1lu4_A           11 TLSGAPFDGASLQGKPAVLWFWTP-WCPFCNAEAPSLSQVAAANP---AVTFVGIATRAD----VGAMQSFVSK-YNLNF   81 (136)
T ss_dssp             BTTSCEEEGGGGTTSCEEEEEECT-TCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSC----HHHHHHHHHH-HTCCS
T ss_pred             cCCCCeecHHHhCCCEEEEEEECC-cChhHHHHHHHHHHHHHHCC---CcEEEEEEcCCC----HHHHHHHHHH-cCCCc
Confidence            456788999999999999999999 99765  5667999999885   899999997431    1133444432 24466


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                      ..+.-++       ..+.+.|++.+.|+++++|++|+++
T Consensus        82 ~~~~d~~-------~~~~~~~~i~~~P~~~lid~~G~i~  113 (136)
T 1lu4_A           82 TNLNDAD-------GVIWARYNVPWQPAFVFYRADGTST  113 (136)
T ss_dssp             EEEECTT-------SHHHHHTTCCSSSEEEEECTTSCEE
T ss_pred             eEEECCc-------hhHHHhcCCCCCCEEEEECCCCcEE
Confidence            5444322       2355669999999999999999997

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.67  E-value=3e-08  Score=90.41  Aligned_cols=103  Identities=13%  Similarity=0.150  Sum_probs=73.9

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEeccc---------------CCCcchh
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVD---------------GSIDRQQ  380 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD---------------~s~~W~d  380 (658)
                      .+|+.+.++.++||.|+|+|.+. ||++|  +.+.|.++|++.+   +++||.|+++.               .... .+
T Consensus        25 ~~g~~~~l~~~~gk~~lv~F~~~-~C~~C~~~~~~l~~l~~~~~---~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~-~~   99 (165)
T 3ha9_A           25 IDGEVISLNNVGGDVVILWFMAA-WCPSCVYMADLLDRLTEKYR---EISVIAIDFWTAEALKALGLNKPGYPPPDT-PE   99 (165)
T ss_dssp             TTSCEECGGGCCSSEEEEEEECT-TCTTHHHHHHHHHHHHHHCT---TEEEEEEECCSHHHHHHHTCCSTTSCCCCC-HH
T ss_pred             CCCCEeeHHHhCCCEEEEEEECC-CCcchhhhHHHHHHHHHHcC---CcEEEEEEecccccccccccccccCCCCCC-HH
Confidence            57788999999999999999999 99765  5667999999986   89999999840               0000 11


Q ss_pred             hHHHHHHhhcCC-CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          381 ALDKFKNLQKRM-PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       381 de~~F~~~~~~M-PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                      .-++|-.-+ .+ +|..+-- +       ..+.+.|++.+.|+++++|++|+++.
T Consensus       100 ~~~~~~~~~-~~~~~~~~~d-~-------~~~~~~~~v~~~P~~~lid~~G~i~~  145 (165)
T 3ha9_A          100 MFRKFIANY-GDPSWIMVMD-D-------GSLVEKFNVRSIDYIVIMDKSSNVLY  145 (165)
T ss_dssp             HHHHHHHHH-SCTTSEEEEC-C-------SHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred             HHHHHHHHc-CCCCeeEEeC-h-------HHHHHHhCCCCceEEEEEcCCCcEEE
Confidence            333333322 23 4433322 1       24556699999999999999999987

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.67  E-value=1.3e-07  Score=86.89  Aligned_cols=104  Identities=18%  Similarity=0.321  Sum_probs=78.0

Q ss_pred             CCCCcEEecccccCcE-EEEEEe-cCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837          317 GETRTTVQIHVLKKKH-VLLLIS-RPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM  392 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~-VlLyfS-a~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M  392 (658)
                      ..+|+.+.+++++||. |+|+|- +. ||++|  +++.|.++|++++. .+++||.|+.++     .+.-++|-+-+ .+
T Consensus        15 ~~~G~~~~l~~~~gk~~vvl~F~~a~-~C~~C~~~~~~l~~~~~~~~~-~~v~vv~vs~d~-----~~~~~~~~~~~-~~   86 (161)
T 3drn_A           15 ADNGEKISLSDYIGKHNIVLYFYPKD-DTPGSTREASAFRDNWDLLKD-YDVVVIGVSSDD-----INSHKRFKEKY-KL   86 (161)
T ss_dssp             ETTSCEEEGGGTTTTSEEEEEECSCT-TCHHHHHHHHHHHHTHHHHHT-TCEEEEEEESCC-----HHHHHHHHHHT-TC
T ss_pred             cCCCCEEEHHHhcCCCCEEEEEEcCC-CCCchHHHHHHHHHHHHHHHH-cCCEEEEEeCCC-----HHHHHHHHHHh-CC
Confidence            3578889999999998 999998 99 99764  67789999999973 469999999832     12444554432 45


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccCC----ceEEEEECCCCceecc
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYSK----KAIIVSVDPQGRILNQ  435 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~~----iP~LVvL~pqGkv~~~  435 (658)
                      ||..+.-++       ..+.+.|++.+    +|..+++|++|+++..
T Consensus        87 ~~~~~~d~~-------~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~  126 (161)
T 3drn_A           87 PFILVSDPD-------KKIRELYGAKGFILPARITFVIDKKGIIRHI  126 (161)
T ss_dssp             CSEEEECTT-------SHHHHHTTCCCSSSCCCEEEEECTTSBEEEE
T ss_pred             CceEEECCc-------HHHHHHcCCCCcCcccceEEEECCCCEEEEE
Confidence            665554332       23456699999    9999999999999643

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=98.67  E-value=7.4e-08  Score=86.80  Aligned_cols=113  Identities=12%  Similarity=0.119  Sum_probs=76.0

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCChH--H-HHHHHHHHHHhcCCCCeeEEEEecccCCCcch--hhHHHHHHhhcCC
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQE--E-ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQ--QALDKFKNLQKRM  392 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~-~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~--dde~~F~~~~~~M  392 (658)
                      ++|+.+.++.++||.|+|+|.+. ||++|  + ++.|.++|++++. .++++|.|++.....+.+  +.-.+|-.- ..+
T Consensus        16 ~~g~~~~l~~~~gk~vlv~f~a~-wC~~C~~~~~~~l~~l~~~~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~   92 (158)
T 3eyt_A           16 NSATDLTLADLRGKVIVIEAFQM-LCPGCVMHGIPLAQKVRAAFPE-DKVAVLGLHTVFEHHEAMTPISLKAFLHE-YRI   92 (158)
T ss_dssp             SCSSCCCTGGGTTSEEEEEEECT-TCHHHHHTHHHHHHHHHHHSCT-TTEEEEEEECCCSCGGGSCHHHHHHHHHH-TTC
T ss_pred             cCCCccCHHHhCCCEEEEEEECC-cCcchhhhhhHHHHHHHHHhCc-CCEEEEEEEecccccccCCHHHHHHHHHH-cCC
Confidence            35678999999999999999999 99765  4 6789999999863 469999999731100011  133334321 234


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      +|..+--++  .......+.+.|++.++|+++++|++|+++..
T Consensus        93 ~~~~~~d~~--~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  133 (158)
T 3eyt_A           93 KFPVGVDQP--GDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAH  133 (158)
T ss_dssp             CSCEEEECC--CSSSSCHHHHHTTCCSSSEEEEECTTSEEEEE
T ss_pred             CceEEEcCc--cchhhHHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence            443332222  10111145667999999999999999999764

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.66  E-value=1.3e-07  Score=89.45  Aligned_cols=117  Identities=10%  Similarity=0.127  Sum_probs=79.9

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccC--CCcchh-hHHHHH--Hhh
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDG--SIDRQQ-ALDKFK--NLQ  389 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~--s~~W~d-de~~F~--~~~  389 (658)
                      ..+|+.+++++++||.|+|+|.+. ||++|  +++.|.++|++++. .+++||.|++++.  -...+. .-++|-  .+.
T Consensus        35 ~~~G~~~~l~~~~Gk~vll~F~at-wC~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~  112 (190)
T 2vup_A           35 DADHKPYNLVQHKGSPLLIYNVAS-KCGYTKGGYETATTLYNKYKS-QGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFK  112 (190)
T ss_dssp             BTTSSBCCGGGGTTSCEEEEEECS-SSTTHHHHHHHHHHHHHHHGG-GTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHC
T ss_pred             cCCCCEEEHHHcCCCEEEEEEecC-CCCccHHHHHHHHHHHHHHhc-CCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcC
Confidence            356778999999999999999999 99765  67789999999974 3699999998420  001122 334454  344


Q ss_pred             cCCCceee-cCCCCCcHHHHHHHH-HhhccCCce------EEEEECCCCceecc
Q 046837          390 KRMPWYSI-QDPAMIQPAVIKYVK-EEWKYSKKA------IIVSVDPQGRILNQ  435 (658)
Q Consensus       390 ~~MPWyAV-pf~~~i~~~~~r~ik-e~f~~~~iP------~LVvL~pqGkv~~~  435 (658)
                      -..|+++- ........+..+++. +.|++.++|      +.+++|++|+++..
T Consensus       113 ~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~  166 (190)
T 2vup_A          113 AEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVER  166 (190)
T ss_dssp             CCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEE
T ss_pred             CCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEE
Confidence            44555541 221111122444443 457888999      99999999999864

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.66  E-value=4.2e-08  Score=93.16  Aligned_cols=101  Identities=16%  Similarity=0.201  Sum_probs=76.0

Q ss_pred             cEEecccccCcEEEEEEe-cCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh---cCCCc
Q 046837          321 TTVQIHVLKKKHVLLLIS-RPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ---KRMPW  394 (658)
Q Consensus       321 ~kV~Is~L~gK~VlLyfS-a~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~---~~MPW  394 (658)
                      +.|++++++||.|+|+|- +. ||++  .+++.|.++|++++. .+++||.|++++     .+..++|-+-+   ..++|
T Consensus        36 ~~v~l~~~~gk~vvl~F~~a~-~C~~C~~~~~~l~~l~~~~~~-~~v~vv~Vs~d~-----~~~~~~~~~~~~~~~~~~~  108 (195)
T 2bmx_A           36 TTITSDEHPGKWRVVFFWPKD-FTFVCPTEIAAFSKLNDEFED-RDAQILGVSIDS-----EFAHFQWRAQHNDLKTLPF  108 (195)
T ss_dssp             EEEETTSSTTCEEEEEECSCT-TSCCCHHHHHHHHHTHHHHHT-TTEEEEEEESSC-----HHHHHHHHHHCTTGGGCCS
T ss_pred             cEeeHHHhCCCcEEEEEEcCC-CCCCcHHHHHHHHHHHHHHHH-CCCEEEEEECCC-----HHHHHHHHHHhccccCCce
Confidence            789999999999999999 99 9965  567889999999863 479999999732     12445565443   14555


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccC-----CceEEEEECCCCceecc
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYS-----KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~-----~iP~LVvL~pqGkv~~~  435 (658)
                      ..+.-++       ..+.+.|++.     ++|+++++|++|+++..
T Consensus       109 ~~~~d~~-------~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~  147 (195)
T 2bmx_A          109 PMLSDIK-------RELSQAAGVLNADGVADRVTFIVDPNNEIQFV  147 (195)
T ss_dssp             CEEECTT-------SHHHHHHTCBCTTSSBCEEEEEECTTSBEEEE
T ss_pred             eEEeCCc-------hHHHHHhCCcccCCCccceEEEEcCCCeEEEE
Confidence            4443222       2345569999     99999999999999764

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.66  E-value=9.2e-08  Score=90.43  Aligned_cols=117  Identities=9%  Similarity=0.079  Sum_probs=78.0

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc---C
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK---R  391 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~---~  391 (658)
                      ..+|+.|.+++++||.|+|+|.+. ||++  .+++.|.++|++++.+ +++||.|++++...+-.++.+...++..   .
T Consensus        33 d~~G~~~~l~~~~Gk~vlv~F~at-wC~~C~~~~p~l~~l~~~~~~~-~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~  110 (187)
T 3dwv_A           33 DADHKPYNLVQHKGSPLLIYNVAS-KCGYTKGGYETATTLYNKYKSQ-GFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFK  110 (187)
T ss_dssp             BTTSCBCCGGGGTTSCEEEEEECC-BCSCCTTHHHHHHHHHHHHGGG-TCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCC
T ss_pred             cCCCCEeeHHHhCCCEEEEEEecC-CCCCcHHHHHHHHHHHHHhhhC-CeEEEEEECcccCCCCCCCHHHHHHHHHhccC
Confidence            346778999999999999999999 9965  5788999999999754 7999999984200000012333444333   4


Q ss_pred             CCceeec--C-CCCCcHHHHHHHHH----hhccCCce---EEEEECCCCceecc
Q 046837          392 MPWYSIQ--D-PAMIQPAVIKYVKE----EWKYSKKA---IIVSVDPQGRILNQ  435 (658)
Q Consensus       392 MPWyAVp--f-~~~i~~~~~r~ike----~f~~~~iP---~LVvL~pqGkv~~~  435 (658)
                      ++|..+.  . ......+..++++.    .+++..+|   +.+++|++|+++..
T Consensus       111 ~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~  164 (187)
T 3dwv_A          111 AEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVER  164 (187)
T ss_dssp             CSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEE
T ss_pred             CCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEE
Confidence            5554442  1 11111234555553    34667788   99999999999865

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.65  E-value=3.2e-08  Score=89.84  Aligned_cols=107  Identities=12%  Similarity=0.064  Sum_probs=76.1

Q ss_pred             cCCCCcEEecccccCc-EEEEEEe-cCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcC
Q 046837          316 DGETRTTVQIHVLKKK-HVLLLIS-RPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKR  391 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK-~VlLyfS-a~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~  391 (658)
                      ...+|+.+++++++|| .|+|+|- +. ||++|  +++.|.++|++++. .+++||.|++++     .+..++|-+-+ .
T Consensus        21 ~~~~G~~~~l~~~~gk~~vvl~F~~a~-~C~~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~-----~~~~~~~~~~~-~   92 (160)
T 1xvw_A           21 RDQNQQLVTLRGYRGAKNVLLVFFPLA-FTGICQGELDQLRDHLPEFEN-DDSAALAISVGP-----PPTHKIWATQS-G   92 (160)
T ss_dssp             ECTTSCEEEGGGGTTTCEEEEEECSCT-TSSHHHHHHHHHHHTGGGTSS-SSEEEEEEESCC-----HHHHHHHHHHH-T
T ss_pred             EcCCCCEEeHHHhcCCCCEEEEEECCC-CCCchHHHHHHHHHHHHHHHH-CCcEEEEEeCCC-----HHHHHHHHHhc-C
Confidence            3457889999999999 8999996 99 99875  56789999999863 479999999732     12444554432 2


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhccC----Cce--EEEEECCCCceecc
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKYS----KKA--IIVSVDPQGRILNQ  435 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~~----~iP--~LVvL~pqGkv~~~  435 (658)
                      .+|..+.-.     .....+.+.|++.    ++|  ..+++|++|+++..
T Consensus        93 ~~~~~~~d~-----~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~  137 (160)
T 1xvw_A           93 FTFPLLSDF-----WPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFA  137 (160)
T ss_dssp             CCSCEEECT-----TTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEE
T ss_pred             CCceEEecC-----CcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEE
Confidence            344433221     0012345669998    999  99999999999764

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.65  E-value=1.6e-07  Score=87.74  Aligned_cols=112  Identities=12%  Similarity=0.136  Sum_probs=79.4

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCC---hHHHHHHHHHHHHhcC-CCCeeEEEEecccCCCcchhhHHHHHHhhc-CC
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDIS---QEEILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQALDKFKNLQK-RM  392 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~---~~~~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~dde~~F~~~~~-~M  392 (658)
                      .+|+.|++++++||.|+|+|-+. ||+   +.+++.|.++|++++. ..+++||+||++ +.+. -+.-++|-+-+. ..
T Consensus        16 ~~G~~v~l~~~~Gk~vll~F~~t-~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d-~~d~-~~~~~~~~~~~~~~~   92 (170)
T 3me7_A           16 SYGNEFQLKNLKGKPIILSPIYT-HCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFD-PKDT-LEDIKRFQKEYGIDG   92 (170)
T ss_dssp             TTCCEEEGGGGTTSCEEEEEECT-TCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECC-TTCC-HHHHHHHHHHTTCCS
T ss_pred             CCcCEEchHHhCCCEEEEEEECC-CCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECC-CCCC-HHHHHHHHHHcCCCC
Confidence            57788999999999999999999 996   3567889999999965 468999999984 2110 114445544332 32


Q ss_pred             -CceeecCCCCCcHHHHHHHHHhhcc---------CCceEEEEECCCCceecc
Q 046837          393 -PWYSIQDPAMIQPAVIKYVKEEWKY---------SKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       393 -PWyAVpf~~~i~~~~~r~ike~f~~---------~~iP~LVvL~pqGkv~~~  435 (658)
                       .|.-+--.   +....+.+.+.|++         ...|.++++||+|+++..
T Consensus        93 ~~w~~l~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~  142 (170)
T 3me7_A           93 KGWKVVKAK---TSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDY  142 (170)
T ss_dssp             SSEEEEEES---SHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEE
T ss_pred             CCeEEEeCC---CHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEE
Confidence             37433222   23456666676664         466899999999999853

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.64  E-value=1.6e-07  Score=89.98  Aligned_cols=110  Identities=9%  Similarity=0.112  Sum_probs=78.1

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCCh-H--HHHHHHHHHHHhcC--CCCeeEEEEecccCCCcchhhHHHHHHhhc-
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQ-E--EILFLSNMYKDLKE--SKECRIVWLPIVDGSIDRQQALDKFKNLQK-  390 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~-~--~~~~L~~iY~~lk~--~~~fEIVwIpivD~s~~W~dde~~F~~~~~-  390 (658)
                      ..+|+.|.+++++||.|+|+|.+. ||++ |  +++.|.++|++++.  ..+++||.|+++..    .|..+...++.. 
T Consensus        28 d~~G~~v~l~~~~Gk~vlv~F~at-~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~----~d~~~~~~~~~~~  102 (200)
T 2b7k_A           28 DMYGNEFTEKNLLGKFSIIYFGFS-NCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPA----RDSPAVLKEYLSD  102 (200)
T ss_dssp             ETTSCEEEGGGGTTSCEEEEEECT-TCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTT----TCCHHHHHHHHTT
T ss_pred             cCCCCEEeHHHcCCCEEEEEEECC-CCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCC----CCCHHHHHHHHHH
Confidence            357888999999999999999999 9986 6  57789999999975  36899999998421    122233333333 


Q ss_pred             -CCCceeecCCCCCcHHHHHHHHHhhccC-Cce---------------EEEEECCCCceecc
Q 046837          391 -RMPWYSIQDPAMIQPAVIKYVKEEWKYS-KKA---------------IIVSVDPQGRILNQ  435 (658)
Q Consensus       391 -~MPWyAVpf~~~i~~~~~r~ike~f~~~-~iP---------------~LVvL~pqGkv~~~  435 (658)
                       ..+|..++-.    ......+.+.|++. ++|               +.+++||+|+++..
T Consensus       103 ~~~~~~~l~~~----~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~  160 (200)
T 2b7k_A          103 FHPSILGLTGT----FDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA  160 (200)
T ss_dssp             SCTTCEEEECC----HHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred             cCCCceEEeCC----HHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEE
Confidence             3568766642    24455666778886 454               78999999999853

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.64  E-value=8.6e-08  Score=84.11  Aligned_cols=105  Identities=12%  Similarity=0.178  Sum_probs=74.5

Q ss_pred             cCCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc--C
Q 046837          316 DGETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK--R  391 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~--~  391 (658)
                      ...+|+.+.++. +||.|+|+|.+. ||++|  +.+.|.++|++++. .++++|.|++++.    .++.+....+..  .
T Consensus        21 ~~~~g~~~~l~~-~gk~~ll~f~~~-~C~~C~~~~~~l~~~~~~~~~-~~~~~v~v~~d~~----~~~~~~~~~~~~~~~   93 (145)
T 3erw_A           21 KTIEGEDISIPN-KGQKTILHFWTS-WCPPCKKELPQFQSFYDAHPS-DSVKLVTVNLVNS----EQNQQVVEDFIKANK   93 (145)
T ss_dssp             ECTTSCEEEESC-TTSEEEEEEECS-SCHHHHHHHHHHHHHHHHCCC-SSEEEEEEECGGG----SSCHHHHHHHHHHTT
T ss_pred             ecCCCCEEeHHH-CCCEEEEEEECC-CCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEccCC----cCCHHHHHHHHHHcC
Confidence            345677899999 999999999999 99764  56679999998863 4699999998431    113333333322  3


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                      .+|..+.-++       ..+.+.|++.+.|+++++|++|+++.
T Consensus        94 ~~~~~~~d~~-------~~~~~~~~v~~~P~~~lid~~G~i~~  129 (145)
T 3erw_A           94 LTFPIVLDSK-------GELMKEYHIITIPTSFLLNEKGEIEK  129 (145)
T ss_dssp             CCSCEEECSS-------SHHHHHTTCCEESEEEEECTTCCEEE
T ss_pred             CceeEEEcCc-------hhHHHhcCcCccCeEEEEcCCCcEEE
Confidence            4443332221       23566799999999999999999875

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.63  E-value=1.3e-07  Score=86.13  Aligned_cols=110  Identities=14%  Similarity=0.287  Sum_probs=78.6

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCCh-H--HHHHHHHHHHHhcCC--CCeeEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQ-E--EILFLSNMYKDLKES--KECRIVWLPIVDGSIDRQQALDKFKNLQKRM  392 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~-~--~~~~L~~iY~~lk~~--~~fEIVwIpivD~s~~W~dde~~F~~~~~~M  392 (658)
                      .+| .+.+++++||.|+|+|.+. ||++ |  +++.|.++|++++.+  .+++||+|++++..+. .+.-++|-+-+ ..
T Consensus        24 ~~g-~~~l~~~~gk~vll~f~~~-~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~-~~~~~~~~~~~-~~   99 (172)
T 2k6v_A           24 PQG-PVRLSQFQDKVVLLFFGFT-RCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDP-PEVADRYAKAF-HP   99 (172)
T ss_dssp             SSS-EEEGGGSTTSEEEEEEECT-TCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCC-HHHHHHHHHHH-CT
T ss_pred             CCC-CCcHHHhCCCEEEEEEECC-CCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCC-HHHHHHHHHHh-CC
Confidence            456 8999999999999999999 9986 6  567899999998755  4899999998421000 11334454433 36


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhc---------------cCCceEEEEECCCCceeccc
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWK---------------YSKKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~---------------~~~iP~LVvL~pqGkv~~~n  436 (658)
                      +|..+.-+    ...++.+.+.|+               +.+.|+++++| +|+++..-
T Consensus       100 ~~~~l~d~----~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~  153 (172)
T 2k6v_A          100 SFLGLSGS----PEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLY  153 (172)
T ss_dssp             TEEEECCC----HHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEE
T ss_pred             CcEEEeCC----HHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEE
Confidence            77766543    234455555555               46889999999 99998643

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.63  E-value=1.2e-07  Score=85.62  Aligned_cols=108  Identities=11%  Similarity=0.092  Sum_probs=75.2

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW  394 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW  394 (658)
                      ..+|+.+.++.++||.|+|+|.+. ||++|  +.+.|.++|++++ +.++++|.|++.+.    .+.-.+|-.- ..++|
T Consensus        21 ~~~g~~~~l~~~~gk~vlv~f~~~-~C~~C~~~~~~l~~l~~~~~-~~~v~~v~v~~d~~----~~~~~~~~~~-~~~~~   93 (165)
T 3or5_A           21 TVDGKPFSSASLKGKAYIVNFFAT-WCPPCRSEIPDMVQVQKTWA-SRGFTFVGIAVNEQ----LPNVKNYMKT-QGIIY   93 (165)
T ss_dssp             CTTSCEEEGGGGTTCEEEEEEECT-TSHHHHHHHHHHHHHHHHHT-TTTEEEEEEECSCC----HHHHHHHHHH-HTCCS
T ss_pred             CCCCCEechhHcCCCEEEEEEEcC-cCHHHHHHHHHHHHHHHHhc-cCCeEEEEEECCCC----HHHHHHHHHH-cCCCC
Confidence            367888999999999999999999 99764  5677999999987 34599999998431    1133344332 34566


Q ss_pred             eeecCCCCCcHHHHHHHHHhh--ccCCceEEEEECCCCceecc
Q 046837          395 YSIQDPAMIQPAVIKYVKEEW--KYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f--~~~~iP~LVvL~pqGkv~~~  435 (658)
                      ..+..+    .+..+.+...+  ++.+.|+++++|++|+++..
T Consensus        94 ~~~~~~----~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~  132 (165)
T 3or5_A           94 PVMMAT----PELIRAFNGYIDGGITGIPTSFVIDASGNVSGV  132 (165)
T ss_dssp             CEEECC----HHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEE
T ss_pred             ceEecC----HHHHHHHhhhhccCCCCCCeEEEECCCCcEEEE
Confidence            544432    23333321111  79999999999999999743

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.63  E-value=5.1e-08  Score=84.45  Aligned_cols=101  Identities=17%  Similarity=0.153  Sum_probs=73.2

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC-C
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM-P  393 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M-P  393 (658)
                      ..+|+.+.++.++||.|+|+|.+. ||++|  +.+.|.+++++++   +++++.|++.+.    .+.-.+|-.-+ .+ +
T Consensus        12 ~~~g~~~~l~~~~~k~~ll~f~~~-~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~----~~~~~~~~~~~-~~~~   82 (136)
T 1zzo_A           12 TLDGHDFHGESLLGKPAVLWFWAP-WCPTCQGEAPVVGQVAASHP---EVTFVGVAGLDQ----VPAMQEFVNKY-PVKT   82 (136)
T ss_dssp             BTTSCEEEGGGGTTSCEEEEEECT-TCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSC----HHHHHHHHHHT-TCTT
T ss_pred             cCCCCEeeHHHhCCCeEEEEEEcC-CChhHHHHHHHHHHHHHHcC---CeEEEEEeCCCC----HHHHHHHHHHc-CCCc
Confidence            346788999999999999999999 99765  5667999999875   799999997431    11333333222 23 4


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                      |..+..++       ..+.+.|++.+.|+++++|++|+++
T Consensus        83 ~~~~~d~~-------~~~~~~~~i~~~P~~~~id~~g~i~  115 (136)
T 1zzo_A           83 FTQLADTD-------GSVWANFGVTQQPAYAFVDPHGNVD  115 (136)
T ss_dssp             SEEEECTT-------CHHHHHTTCCSSSEEEEECTTCCEE
T ss_pred             eEEEEcCC-------cHHHHHcCCCCCceEEEECCCCCEE
Confidence            44433322       2345669999999999999999996

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.62  E-value=8.2e-08  Score=86.47  Aligned_cols=113  Identities=15%  Similarity=0.129  Sum_probs=75.5

Q ss_pred             CCcEEecccccCcEEEEEEecCCCCChH--H-HHHHHHHHHHhcCCCCeeEEEEecccCCCcc--hhhHHHHHHhhcCCC
Q 046837          319 TRTTVQIHVLKKKHVLLLISRPDDISQE--E-ILFLSNMYKDLKESKECRIVWLPIVDGSIDR--QQALDKFKNLQKRMP  393 (658)
Q Consensus       319 ~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~-~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W--~dde~~F~~~~~~MP  393 (658)
                      +|+.+.++.++||.|+|+|.+. ||++|  + ++.|.++|++.+. .+++||.|+++....+.  .+.-++|-+- ..++
T Consensus        19 ~g~~~~l~~~~gk~vlv~F~a~-~C~~C~~e~~~~l~~l~~~~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~~   95 (160)
T 3lor_A           19 NHEGLSNEDLRGKVVVVEVFQM-LCPGCVNHGVPQAQKIHRMIDE-SQVQVIGLHSVFEHHDVMTPEALKVFIDE-FGIK   95 (160)
T ss_dssp             SSCCCCHHHHTTSEEEEEEECT-TCHHHHHTHHHHHHHHHHHSCT-TTEEEEEEECCCSCGGGSCHHHHHHHHHH-TTCC
T ss_pred             CCCccCHHHhCCCEEEEEEEcC-CCcchhhhhhHHHHHHHHHhCc-CCcEEEEEeccccccccCCHHHHHHHHHH-cCCC
Confidence            4577999999999999999999 99765  4 6789999999863 36999999973110000  1133334322 2334


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      |..+--++. .....+.+.+.|++.++|+.+++|++|+++..
T Consensus        96 ~~~~~d~~~-~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  136 (160)
T 3lor_A           96 FPVAVDMPR-EGQRIPSTMKKYRLEGTPSIILADRKGRIRQV  136 (160)
T ss_dssp             SCEEEECCC-TTCSSCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred             CcEEECCcc-ccchhhhHHHhcccCccceEEEECCCCcEEEE
Confidence            433322221 00112236667999999999999999999864

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.61  E-value=1.3e-07  Score=92.63  Aligned_cols=103  Identities=16%  Similarity=0.200  Sum_probs=78.7

Q ss_pred             CCcEEecccccCcEEEEEEec-CCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh------
Q 046837          319 TRTTVQIHVLKKKHVLLLISR-PDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ------  389 (658)
Q Consensus       319 ~~~kV~Is~L~gK~VlLyfSa-~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~------  389 (658)
                      +|+.|.+++++||.|+|+|-+ . ||++  .+++.|.++|++++ +.+++||.|++++     .++..+|.+.+      
T Consensus        58 ~G~~v~l~~~~Gk~vll~F~a~~-wC~~C~~~~p~l~~l~~~~~-~~~v~vv~Is~D~-----~~~~~~~~~~~~~~~~~  130 (222)
T 3ztl_A           58 EFKEICLKDYRGKYVVLFFYPAD-FTFVCPTEIIAFSDQVEEFN-SRNCQVIACSTDS-----QYSHLAWDNLDRKSGGL  130 (222)
T ss_dssp             EEEEEEGGGGTTSEEEEEECSCS-SCSHHHHHHHHHHHTHHHHH-TTTEEEEEEESSC-----HHHHHHHHHSCGGGTSC
T ss_pred             CCcEEeHHHhCCCeEEEEEECCC-CCCchHHHHHHHHHHHHHHH-HCCCEEEEEECCC-----HHHHHHHHHHhhhhccc
Confidence            457899999999999999996 8 9975  56778999999997 4469999999732     12555665543      


Q ss_pred             cCCCceeecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceecc
Q 046837          390 KRMPWYSIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       390 ~~MPWyAVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~  435 (658)
                      ..++|..+.-++       ..+.+.|++.      ..|..+++|++|+++..
T Consensus       131 ~~~~~~~l~D~~-------~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~  175 (222)
T 3ztl_A          131 GHMKIPLLADRK-------QEISKAYGVFDEEDGNAFRGLFIIDPNGILRQI  175 (222)
T ss_dssp             CSCSSCEEECSS-------SHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEE
T ss_pred             cccceeEEeCCc-------hHHHHHcCCeecCCCCccceEEEECCCCeEEEE
Confidence            166776655433       2345558888      89999999999999865

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.61  E-value=1.8e-07  Score=85.01  Aligned_cols=120  Identities=10%  Similarity=0.024  Sum_probs=84.5

Q ss_pred             cCCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837          316 DGETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP  393 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP  393 (658)
                      ...+|+.+.++.++||.|+|+|.+. ||++|  +.+.|.++|++++. .++.+|.|+..+   .+    .+|-. ...++
T Consensus        27 ~~~~g~~~~l~~~~gk~vll~F~~~-~C~~C~~~~~~l~~~~~~~~~-~~~~~v~v~~d~---~~----~~~~~-~~~~~   96 (158)
T 3hdc_A           27 PTLSGENKSLAQYRGKIVLVNFWAS-WCPYCRDEMPSMDRLVKSFPK-GDLVVLAVNVEK---RF----PEKYR-RAPVS   96 (158)
T ss_dssp             ECTTSCEEESGGGTTSEEEEEEECT-TCHHHHHHHHHHHHHHHHSST-TSEEEEEEECSS---SC----CGGGG-GCCCS
T ss_pred             EcCCCCEEehHHhCCCEEEEEEECC-cCHHHHHHHHHHHHHHHHccc-CCeEEEEEeCCH---HH----HHHHH-HcCCC
Confidence            3457888999999999999999999 99764  56789999999863 578999988733   11    12222 23456


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceec-------cchHHHHHHhCCccccCC
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN-------QNAFHTLWIWGISAFPFT  452 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~-------~nA~~mI~~wG~~AFPFT  452 (658)
                      |..+.-++       ..+.+.|++.+.|+++++|++|+++.       .+.-+++..+...-|||.
T Consensus        97 ~~~~~d~~-------~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~~~~~  155 (158)
T 3hdc_A           97 FNFLSDAT-------GQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEGHHH  155 (158)
T ss_dssp             CEEEECTT-------SHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTTC----
T ss_pred             ceEEECch-------HHHHHHhCCCCcceEEEEcCCCCEEEEEeCCCccchHHHHHHHHhhccccc
Confidence            55444322       24566799999999999999999874       455666666666666663

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.61  E-value=3.6e-07  Score=83.62  Aligned_cols=111  Identities=15%  Similarity=0.222  Sum_probs=76.3

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCC-h--HHHHHHHHHHHHhcCCC-CeeEEEEecccCCCcch--hhHHHHHHhhc
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDIS-Q--EEILFLSNMYKDLKESK-ECRIVWLPIVDGSIDRQ--QALDKFKNLQK  390 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~-~--~~~~~L~~iY~~lk~~~-~fEIVwIpivD~s~~W~--dde~~F~~~~~  390 (658)
                      ..+|+.+.+++++||.|+|+|-+. ||+ +  .+++.|.++|++++..+ +++||.|++++   +.+  +.-.+|-+- .
T Consensus        20 ~~~G~~~~l~~~~gk~vll~f~~~-~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~---~~d~~~~~~~~~~~-~   94 (174)
T 1xzo_A           20 NQDGKNVSLESLKGEVWLADFIFT-NCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDP---ENDKPKQLKKFAAN-Y   94 (174)
T ss_dssp             CTTSCEEETGGGTTCCEEEEEECS-CCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCT---TTCCHHHHHHHHTT-S
T ss_pred             cCCCCEEehhhcCCCEEEEEEEcC-CCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCC---CCCCHHHHHHHHHH-c
Confidence            457889999999999999999999 997 4  56888999999987543 79999999842   111  123344332 2


Q ss_pred             CCCc---eeecCCCCCcHHHHHHHH-Hh-----------hccCCceEEEEECCCCceecc
Q 046837          391 RMPW---YSIQDPAMIQPAVIKYVK-EE-----------WKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       391 ~MPW---yAVpf~~~i~~~~~r~ik-e~-----------f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      .++|   ..+.-++   .+..+.+. ..           +++.+.|+.+++|++|+++..
T Consensus        95 ~~~~~~~~~l~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~  151 (174)
T 1xzo_A           95 PLSFDNWDFLTGYS---QSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD  151 (174)
T ss_dssp             CCCGGGEEEEBCSC---HHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred             CCCCcceEEEeCCC---HHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEE
Confidence            3444   3333222   34333332 22           356789999999999999853

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.61  E-value=2.1e-07  Score=87.38  Aligned_cols=100  Identities=15%  Similarity=0.167  Sum_probs=76.9

Q ss_pred             EEecccccCcEEEEEEe-cCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc---CCCce
Q 046837          322 TVQIHVLKKKHVLLLIS-RPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK---RMPWY  395 (658)
Q Consensus       322 kV~Is~L~gK~VlLyfS-a~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~---~MPWy  395 (658)
                      .+.+++++||.|+|+|- +. ||++  .+++.|.++|++++. .+++||.|++++     .+..++|-..+.   .+||.
T Consensus        23 ~~~l~~~~gk~vvl~F~~a~-~C~~C~~~~~~l~~~~~~~~~-~~v~vv~vs~d~-----~~~~~~~~~~~~~~~~~~~~   95 (187)
T 1we0_A           23 EVTEADLKGKWSIVVFYPAD-FSFVCPTELEDVQKEYAELKK-LGVEVYSVSTDT-----HFVHKAWHENSPAVGSIEYI   95 (187)
T ss_dssp             EEETTTTSSSEEEEEECSCT-TCSSCTHHHHHHHHHHHHHHH-TTEEEEEEESSC-----HHHHHHHHHSCHHHHTCCSE
T ss_pred             EecHHHHCCCCEEEEEECCC-CCcchHHHHHHHHHHHHHHHH-cCCEEEEEECCC-----HHHHHHHHHHhccccCCCce
Confidence            89999999999999999 99 9965  678889999999874 379999999732     124555655442   56776


Q ss_pred             eecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceecc
Q 046837          396 SIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       396 AVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~  435 (658)
                      .+.-++       ..+.+.|++.      +.|+.+++|++|+++..
T Consensus        96 ~~~d~~-------~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~  134 (187)
T 1we0_A           96 MIGDPS-------QTISRQFDVLNEETGLADRGTFIIDPDGVIQAI  134 (187)
T ss_dssp             EEECTT-------CHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             EEECCc-------hHHHHHhCCCcCCCCceeeEEEEECCCCeEEEE
Confidence            554322       2344568998      89999999999999865

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.61  E-value=4.2e-07  Score=84.62  Aligned_cols=110  Identities=16%  Similarity=0.170  Sum_probs=76.9

Q ss_pred             cCCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc--C
Q 046837          316 DGETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK--R  391 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~--~  391 (658)
                      ...+|+.+.+++++||.|+|+|-+. ||++|  +++.|.++|++++ ..+++||.|++++.+   .+..++|-+-+.  .
T Consensus        46 ~~~~G~~~~l~~~~gk~vll~F~a~-~C~~C~~~~~~l~~l~~~~~-~~~~~vv~v~~d~~~---~~~~~~~~~~~~~~~  120 (186)
T 1jfu_A           46 EDADGKPKKLSDFRGKTLLVNLWAT-WCVPCRKEMPALDELQGKLS-GPNFEVVAINIDTRD---PEKPKTFLKEANLTR  120 (186)
T ss_dssp             ECTTSCEEEGGGGTTSEEEEEEECT-TCHHHHHHHHHHHHHHHHHC-BTTEEEEEEECCCSC---TTHHHHHHHHTTCCT
T ss_pred             EcCCCCEeeHHHcCCCEEEEEEEeC-CCHhHHHHHHHHHHHHHHhc-cCCcEEEEEECCCCC---HHHHHHHHHHcCCCC
Confidence            3457889999999999999999999 99764  6778999999986 468999999984210   013344544332  3


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      .|++.-+.     ....+.+.-.++..+.|+.+++|++|+++..
T Consensus       121 ~~~~~d~~-----~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~  159 (186)
T 1jfu_A          121 LGYFNDQK-----AKVFQDLKAIGRALGMPTSVLVDPQGCEIAT  159 (186)
T ss_dssp             TCCEECTT-----CHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred             CceEECCc-----chHHHHhccccccCCCCEEEEECCCCCEEEE
Confidence            56654222     2344443333333599999999999999854

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.59  E-value=2e-07  Score=86.21  Aligned_cols=117  Identities=16%  Similarity=0.206  Sum_probs=73.8

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH-HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchh---hHHHHHHhhcCC
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE-EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQ---ALDKFKNLQKRM  392 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~-~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~d---de~~F~~~~~~M  392 (658)
                      ..+|+.|++++++||.|+|+|.+. ||++| +++.|.++|++++. .+++||.|++++...+..|   .-.+|-.-...+
T Consensus        19 d~~G~~~~l~~~~Gk~vll~F~a~-wC~~C~~~~~l~~l~~~~~~-~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~   96 (171)
T 3cmi_A           19 DKKGQPFPFDQLKGKVVLIVNVAS-KCGFTPQYKELEALYKRYKD-EGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGV   96 (171)
T ss_dssp             BTTSCBCCGGGGTTCEEEEEEEES-SSCCHHHHHHHHHHHHHHGG-GTEEEEEEEECSCC------------------CC
T ss_pred             cCCCCEecHHHcCCCEEEEEEEec-CCCcchhHHHHHHHHHHhcc-CCeEEEEEECcccCCCCCCCHHHHHHHHHhccCC
Confidence            346778999999999999999999 99755 67789999999874 3699999998411101112   223343011234


Q ss_pred             CceeecCCCC---CcHHHHHHHH-HhhccCCce------EEEEECCCCceecc
Q 046837          393 PWYSIQDPAM---IQPAVIKYVK-EEWKYSKKA------IIVSVDPQGRILNQ  435 (658)
Q Consensus       393 PWyAVpf~~~---i~~~~~r~ik-e~f~~~~iP------~LVvL~pqGkv~~~  435 (658)
                      +|..+.-++.   .-.+..+++. +.|++.+.|      +.+++|++|+++..
T Consensus        97 ~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~  149 (171)
T 3cmi_A           97 TFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYER  149 (171)
T ss_dssp             CSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEE
T ss_pred             CceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEE
Confidence            4443321110   0112344443 468999999      99999999999864

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.58  E-value=1.2e-07  Score=88.55  Aligned_cols=108  Identities=7%  Similarity=0.042  Sum_probs=75.3

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchh---hHHHHHHhhcC
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQ---ALDKFKNLQKR  391 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~d---de~~F~~~~~~  391 (658)
                      ..+|+.+.++.++||.|+|+|.+. ||++|  +++.|.++|++++.+  ++||.|++.+....-.|   .-.+|-+-+ .
T Consensus        20 ~~~G~~~~l~~~~gk~vlv~F~a~-~C~~C~~~~~~l~~l~~~~~~~--~~~v~v~~d~~~~~~~d~~~~~~~~~~~~-~   95 (188)
T 2cvb_A           20 DPRGGRYRLSQFHEPLLAVVFMCN-HCPYVKGSIGELVALAERYRGK--VAFVGINANDYEKYPEDAPEKMAAFAEEH-G   95 (188)
T ss_dssp             CTTSCEEEGGGCCSSEEEEEEECS-SCHHHHTTHHHHHHHHHHTTTT--EEEEEEECCCTTTCGGGSHHHHHHHHHHH-T
T ss_pred             cCCCCEEeHHHhCCCEEEEEEECC-CCccHHHHHHHHHHHHHHhhcC--eEEEEEEcCccccccccCHHHHHHHHHHh-C
Confidence            456788999999999999999999 99765  567899999998744  99999998421000001   233343322 2


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      ++|..+--+   +.    .+.+.|++.+.|+++++|++|+++..
T Consensus        96 ~~~~~~~d~---~~----~~~~~~~v~~~P~~~lid~~G~i~~~  132 (188)
T 2cvb_A           96 IFFPYLLDE---TQ----EVAKAYRALRTPEVFLFDERRLLRYH  132 (188)
T ss_dssp             CCSCEEECS---SS----HHHHHTTCCEESEEEEECTTCBEEEE
T ss_pred             CCceEEECC---cc----hHHHHcCCCCCCeEEEECCCCcEEEE
Confidence            343322221   12    34556999999999999999999865

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.57  E-value=9.2e-08  Score=93.04  Aligned_cols=109  Identities=9%  Similarity=0.030  Sum_probs=76.9

Q ss_pred             cCCCCcEEecccccCcE-EEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchh---hHHHHHHhh
Q 046837          316 DGETRTTVQIHVLKKKH-VLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQ---ALDKFKNLQ  389 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~-VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~d---de~~F~~~~  389 (658)
                      ...+|+.|.+++++||. |+|+|.+. ||++|  +++.|.++|++++. .+++||.|++.+....-.|   .-++|-+-+
T Consensus        44 ~~~~G~~v~l~~~~gk~~vll~F~a~-~C~~C~~~~~~l~~l~~~~~~-~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~  121 (218)
T 3u5r_E           44 PDAGGNLFTLAEFKDSPALLVAFISN-RCPFVVLIREALAKFAGDYAG-QGLAVVAINSNDAQAFPEETLERVGAEVKAY  121 (218)
T ss_dssp             ECTTCCEECGGGGTTCSEEEEEECCS-SCHHHHTTHHHHHHHHHHHTT-TTEEEEEEECSCTTTCGGGSHHHHHHHHHHH
T ss_pred             ECCCCCEEeHHHhCCCCeEEEEEECC-CCccHHHHHHHHHHHHHHHHh-CCcEEEEEECCcccccccCCHHHHHHHHHHh
Confidence            34678899999999995 99999999 99764  57789999999964 4599999998431110002   333443322


Q ss_pred             cCCCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          390 KRMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       390 ~~MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                       .++|..+.-++       ..+.+.|++.++|.++++|++|+++.
T Consensus       122 -~~~~~~l~D~~-------~~~~~~~~v~~~P~~~liD~~G~i~~  158 (218)
T 3u5r_E          122 -GYGFPYLKDAS-------QSVAKAYGAACTPDFFLYDRERRLVY  158 (218)
T ss_dssp             -TCCSCEEECTT-------CHHHHHHTCCEESEEEEECTTCBEEE
T ss_pred             -CCCccEEECCc-------cHHHHHcCCCCCCeEEEECCCCcEEE
Confidence             34444332221       23556699999999999999999974

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.57  E-value=4.5e-07  Score=85.38  Aligned_cols=116  Identities=9%  Similarity=0.041  Sum_probs=75.7

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEeccc--CCCcchh-hHHHHHHhhcC
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVD--GSIDRQQ-ALDKFKNLQKR  391 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD--~s~~W~d-de~~F~~~~~~  391 (658)
                      ..+|+.+++++++||.|+|+|.+. ||++|  +++.|.++|++++. .+++||.|++++  ...+++. +-++|-+- ..
T Consensus        36 ~~~G~~v~l~~~~Gk~vlv~F~at-wC~~C~~~~~~l~~l~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~~~~~~~-~~  112 (185)
T 2gs3_A           36 DIDGHMVNLDKYRGFVCIVTNVAS-QGGKTEVNYTQLVDLHARYAE-CGLRILAFPCNQFGKQEPGSNEEIKEFAAG-YN  112 (185)
T ss_dssp             BTTSCEEEGGGGTTSEEEEEEECS-SSTTHHHHHHHHHHHHHHHGG-GTEEEEEEECCTTTTCCCSCHHHHHHHHHH-TT
T ss_pred             cCCCCEeeHHHcCCCEEEEEEecC-CCCchHHHHHHHHHHHHHhhc-CCeEEEEEECcccCCCCCCCHHHHHHHHHH-cC
Confidence            356788999999999999999999 99865  67789999999874 469999999742  0011222 33445321 23


Q ss_pred             CCceeec---CCCCCcHHHHHHHHHhh---c-----cCCceEEEEECCCCceecc
Q 046837          392 MPWYSIQ---DPAMIQPAVIKYVKEEW---K-----YSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       392 MPWyAVp---f~~~i~~~~~r~ike~f---~-----~~~iP~LVvL~pqGkv~~~  435 (658)
                      ++|..+.   .......+..+++++..   +     ++..|..+++|++|+++..
T Consensus       113 ~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~  167 (185)
T 2gs3_A          113 VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR  167 (185)
T ss_dssp             CCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEE
T ss_pred             CCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEe
Confidence            4443332   11111123445554433   3     3346999999999999764

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.57  E-value=2.8e-07  Score=84.05  Aligned_cols=105  Identities=10%  Similarity=0.156  Sum_probs=77.2

Q ss_pred             ccCCCCcEEecccccCcEEEEEEec-CCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcC
Q 046837          315 VDGETRTTVQIHVLKKKHVLLLISR-PDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKR  391 (658)
Q Consensus       315 ~~g~~~~kV~Is~L~gK~VlLyfSa-~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~  391 (658)
                      +...+|+.|.+++++||.|+|+|-+ . |||+  .+++.|.++|++++ +.+++||.|+.++     .+...+|-+-+ .
T Consensus        20 l~~~~G~~~~l~~~~gk~~vl~F~~~~-~c~~C~~~~~~l~~~~~~~~-~~~~~vv~vs~d~-----~~~~~~~~~~~-~   91 (163)
T 3gkn_A           20 LSLSGGTQTTLRAHAGHWLVIYFYPKD-STPGATTEGLDFNALLPEFD-KAGAKILGVSRDS-----VKSHDNFCAKQ-G   91 (163)
T ss_dssp             EECSTTCEECSGGGTTSCEEEEECSCT-TSHHHHHHHHHHHHHHHHHH-HTTCEEEEEESSC-----HHHHHHHHHHH-C
T ss_pred             ccCCCCCEEEHHHhCCCcEEEEEeCCC-CCCcHHHHHHHHHHHHHHHH-HCCCEEEEEeCCC-----HHHHHHHHHHh-C
Confidence            3456788999999999998888887 7 9965  56778999999997 3469999999831     12455565433 4


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhccCC------------ceEEEEECCCCceec
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKYSK------------KAIIVSVDPQGRILN  434 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~~~------------iP~LVvL~pqGkv~~  434 (658)
                      ++|..+.-++   .    .+.+.|++..            .|..+++|++|+++.
T Consensus        92 ~~~~~~~d~~---~----~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~  139 (163)
T 3gkn_A           92 FAFPLVSDGD---E----ALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQ  139 (163)
T ss_dssp             CSSCEEECTT---C----HHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEE
T ss_pred             CCceEEECCc---H----HHHHHhCCccccccccccccCcceEEEEECCCCeEEE
Confidence            5665553322   2    3445588876            899999999999975

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.57  E-value=7.5e-07  Score=79.66  Aligned_cols=105  Identities=19%  Similarity=0.217  Sum_probs=76.7

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchh-hHHHHHHhhcCCC
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQ-ALDKFKNLQKRMP  393 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~d-de~~F~~~~~~MP  393 (658)
                      ..+|+.+.++.++||.|+|+|.+. ||+.  .+.+.|.+++++++. .++++|.|++.+.    +. .-++|-..+ ..+
T Consensus        15 ~~~g~~~~l~~~~gk~vll~f~~~-~C~~C~~~~~~l~~~~~~~~~-~~~~~v~v~~d~~----~~~~~~~~~~~~-~~~   87 (154)
T 3kcm_A           15 TLNGEVVKLSDLKGQVVIVNFWAT-WCPPCREEIPSMMRLNAAMAG-KPFRMLCVSIDEG----GKVAVEEFFRKT-GFT   87 (154)
T ss_dssp             CTTSCEEEGGGGTTSEEEEEEECT-TCHHHHHHHHHHHHHHHHTTT-SSEEEEEEECCTT----HHHHHHHHHHHH-CCC
T ss_pred             cCCCCEEehhhcCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHhcc-CCeEEEEEEcCCc----chHHHHHHHHHc-CCC
Confidence            457788999999999999999999 9976  456789999999863 5799999998421    12 333443322 345


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      |..+.-++       ..+.+.|++.+.|..+++|++|+++..
T Consensus        88 ~~~~~d~~-------~~~~~~~~v~~~P~~~lid~~G~i~~~  122 (154)
T 3kcm_A           88 LPVLLDAD-------KRVGKLYGTTGVPETFVIDRHGVILKK  122 (154)
T ss_dssp             CCEEECTT-------CHHHHHHTCCSBCEEEEECTTSBEEEE
T ss_pred             eeEEecCc-------hHHHHHhCCCCCCeEEEECCCCcEEEE
Confidence            54443222       235566999999999999999999753

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.56  E-value=1.1e-07  Score=90.38  Aligned_cols=108  Identities=15%  Similarity=0.141  Sum_probs=77.2

Q ss_pred             CCc---EEecccc-cCcEEEEEEe-cCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHh-hc
Q 046837          319 TRT---TVQIHVL-KKKHVLLLIS-RPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNL-QK  390 (658)
Q Consensus       319 ~~~---kV~Is~L-~gK~VlLyfS-a~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~-~~  390 (658)
                      +|+   .|+++++ +||.|+|+|. +. ||++  .+++.|.++|++++. .+++||.|++++     .+..++|.+- ..
T Consensus        18 ~G~~~~~v~l~~~~~gk~vvl~F~~a~-~C~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d~-----~~~~~~~~~~~~~   90 (198)
T 1zof_A           18 NNEVDEHFELSKNLGKNGVILFFWPKD-FTFVCPTEIIAFDKRVKDFHE-KGFNVIGVSIDS-----EQVHFAWKNTPVE   90 (198)
T ss_dssp             TSCEEEEEETTTSCCSSEEEEEECSCT-TCSSCCTHHHHHHHTHHHHHH-TTEEEEEEESSC-----HHHHHHHHTSCGG
T ss_pred             CCcccceEEHHHHhCCCcEEEEEECCC-CCCchHHHHHHHHHHHHHHHH-cCCEEEEEECCC-----HHHHHHHHHhhhh
Confidence            566   8999999 9999999999 99 9965  578889999999863 479999999732     1244445432 22


Q ss_pred             CCCceeecCCCCCcHHHHHHHHHhhccC-----CceEEEEECCCCceecc
Q 046837          391 RMPWYSIQDPAMIQPAVIKYVKEEWKYS-----KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       391 ~MPWyAVpf~~~i~~~~~r~ike~f~~~-----~iP~LVvL~pqGkv~~~  435 (658)
                      ...|+.++|+-..|.  .+.+.+.|++.     ++|+.+++|++|+++..
T Consensus        91 ~~~~~~~~~~~~~d~--~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~  138 (198)
T 1zof_A           91 KGGIGQVSFPMVADI--TKSISRDYDVLFEEAIALRGAFLIDKNMKVRHA  138 (198)
T ss_dssp             GTCCCCCSSCEEECT--TSHHHHHTTCEETTTEECEEEEEEETTTEEEEE
T ss_pred             cccccCceeEEEECC--chHHHHHhCCcccCCcccceEEEECCCCEEEEE
Confidence            223344444322222  13445669998     99999999999999865

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.56  E-value=4.4e-07  Score=85.27  Aligned_cols=112  Identities=13%  Similarity=0.165  Sum_probs=78.9

Q ss_pred             cCCCCcEEecccccCcEEEEEEecCCCCC---hHHHHHHHHHHHHhcC-CCCeeEEEEecccCCCcchh---hHHHHHHh
Q 046837          316 DGETRTTVQIHVLKKKHVLLLISRPDDIS---QEEILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQ---ALDKFKNL  388 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfSa~~~~~---~~~~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~d---de~~F~~~  388 (658)
                      ...+|+.|.+++|+||.|+|+|-.. |||   +.+++.|.++|+.++. ..++.+|+||++.    ..|   .-++|-+.
T Consensus        18 ~d~~G~~v~l~d~~Gk~vll~F~~t-~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp----~~Dtp~~l~~y~~~   92 (170)
T 4hde_A           18 TNQDGKPFGTKDLKGKVWVADFMFT-NCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDP----DLDKPENLKAFIQK   92 (170)
T ss_dssp             ECTTSCEEEHHHHTTSCEEEEEECT-TCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT----TTCCHHHHHHHHTT
T ss_pred             ECCCCCEEeHHHhCCCEEEEEEECC-CCCCcccHHHHHHHHHHHhhhcccccceeEeeecCc----ccccHHHHHHHHHH
Confidence            3457889999999999999999999 995   4567789999999865 4689999999842    223   23455544


Q ss_pred             hc--CCCceeecCCCCCcHHHHHHHHHhhcc----------CCceEEEEECCCCceec
Q 046837          389 QK--RMPWYSIQDPAMIQPAVIKYVKEEWKY----------SKKAIIVSVDPQGRILN  434 (658)
Q Consensus       389 ~~--~MPWyAVpf~~~i~~~~~r~ike~f~~----------~~iP~LVvL~pqGkv~~  434 (658)
                      +.  ...|..+--++  .....+..+..|..          ..-|.++++||+|+++.
T Consensus        93 ~~~~~~~~~~ltg~~--~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~  148 (170)
T 4hde_A           93 FTEDTSNWNLLTGYS--LEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMK  148 (170)
T ss_dssp             TCSCCTTEEEEBCSC--HHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEE
T ss_pred             cCCCCCCceecCccc--HHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEE
Confidence            32  23587766544  23344555555543          33478999999999974

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=98.56  E-value=2.4e-07  Score=83.15  Aligned_cols=104  Identities=10%  Similarity=0.024  Sum_probs=77.3

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC--
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM--  392 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M--  392 (658)
                      ..+|+.+.+++++ |.|+|+|.+. ||++|  +.+.|.++|++.    ++++|.|++.+     +++.+....+....  
T Consensus        18 ~~~g~~~~l~~~~-k~vll~f~~~-~C~~C~~~~~~l~~l~~~~----~v~~v~v~~d~-----~~~~~~~~~~~~~~~~   86 (154)
T 3ia1_A           18 DPKGQPVTPATVS-KPAVIVFWAS-WCTVCKAEFPGLHRVAEET----GVPFYVISREP-----RDTREVVLEYMKTYPR   86 (154)
T ss_dssp             CTTSCEECTTTSC-SSEEEEEECT-TCHHHHHHHHHHHHHHHHH----CCCEEEEECCT-----TCCHHHHHHHHTTCTT
T ss_pred             CCCCCEechHHcC-CeEEEEEEcc-cChhHHHHHHHHHHHHHHc----CCeEEEEeCCC-----cccHHHHHHHHHHcCC
Confidence            3477889999999 9999999999 99764  567899999998    79999999831     12444555555554  


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      +|..+..+.    .....+.+.|++.+.|+++++|++|+++..
T Consensus        87 ~~~~~~d~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  125 (154)
T 3ia1_A           87 FIPLLASDR----DRPHEVAARFKVLGQPWTFVVDREGKVVAL  125 (154)
T ss_dssp             EEECBCCSS----CCHHHHHTTSSBCSSCEEEEECTTSEEEEE
T ss_pred             Ccccccccc----cchHHHHHHhCCCcccEEEEECCCCCEEEE
Confidence            443333211    134567788999999999999999998754

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=97.97  E-value=7.9e-09  Score=93.75  Aligned_cols=105  Identities=16%  Similarity=0.237  Sum_probs=73.4

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHH-HHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSN-MYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW  394 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~-iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW  394 (658)
                      .+|+.+.+++++||.|+|+|.+. ||++|  +.+.|.+ +|++.+...++++|.|++.+       +.+..+.+...+.+
T Consensus        21 ~~g~~~~l~~~~gk~vll~f~a~-~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~~~~~~   92 (159)
T 2ls5_A           21 TDGKQVTLSSLRGKVVMLQFTAS-WCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDE-------PLEKVLAFAKSTGV   92 (159)
Confidence            46778999999999999999999 99765  5667888 88887656789999999732       22222333323222


Q ss_pred             eeecCCCCCcHHHHHHHHHhhc--cCCceEEEEECCCCceecc
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWK--YSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~--~~~iP~LVvL~pqGkv~~~  435 (658)
                         +||-..|..  ..+.+.|+  +.++|+++++|++|+++..
T Consensus        93 ---~~~~~~d~~--~~~~~~~~~~~~~~P~~~lid~~G~i~~~  130 (159)
T 2ls5_A           93 ---TYPLGLDPG--ADIFAKYALRDAGITRNVLIDREGKIVKL  130 (159)
Confidence               222222222  34566788  5679999999999998753

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.52  E-value=4.5e-07  Score=84.89  Aligned_cols=98  Identities=17%  Similarity=0.047  Sum_probs=69.8

Q ss_pred             cEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeec
Q 046837          321 TTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQ  398 (658)
Q Consensus       321 ~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVp  398 (658)
                      +.+.++.++||.|+|+|.+. ||++|  +++.|.++|++     +++||.|++.|.    .+.-.+|-+- ...||..+-
T Consensus        49 ~~~~l~~~~gk~vll~F~a~-~C~~C~~~~~~l~~l~~~-----~v~vv~vs~~d~----~~~~~~~~~~-~~~~~~~~~  117 (176)
T 3kh7_A           49 RRLTEADLKGKPALVNVWGT-WCPSCRVEHPELTRLAEQ-----GVVIYGINYKDD----NAAAIKWLNE-LHNPYLLSI  117 (176)
T ss_dssp             SEEEGGGGCSSCEEEEEECT-TCHHHHHHHHHHHHHHHT-----TCEEEEEEESCC----HHHHHHHHHH-TTCCCSEEE
T ss_pred             ceecHHHhCCCEEEEEEECC-cCHHHHHHHHHHHHHHHC-----CCEEEEEeCCCC----HHHHHHHHHH-cCCCCceEE
Confidence            67999999999999999999 99764  56679998886     599999997431    1133333322 234554322


Q ss_pred             CCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          399 DPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       399 f~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      ...  +    ..+.+.|++.+.|..+++|++|+++..
T Consensus       118 ~d~--~----~~~~~~~~v~~~P~~~lid~~G~i~~~  148 (176)
T 3kh7_A          118 SDA--D----GTLGLDLGVYGAPETYLIDKQGIIRHK  148 (176)
T ss_dssp             EET--T----CHHHHHHTCCSSCEEEEECTTCBEEEE
T ss_pred             ECC--c----chHHHHcCCCCCCeEEEECCCCeEEEE
Confidence            211  1    244566999999999999999999753

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.52  E-value=1.7e-07  Score=88.60  Aligned_cols=103  Identities=18%  Similarity=0.179  Sum_probs=77.0

Q ss_pred             CC--cEEecccc-cCcEEEEEEe-cCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc--
Q 046837          319 TR--TTVQIHVL-KKKHVLLLIS-RPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK--  390 (658)
Q Consensus       319 ~~--~kV~Is~L-~gK~VlLyfS-a~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~--  390 (658)
                      +|  +.|+++++ +||.|+|+|- +. ||++  .+++.|.++|++++. .+++||.|++++     .+...+|...+.  
T Consensus        17 ~G~~~~~~l~~~~~gk~vvl~F~~a~-~C~~C~~~~~~l~~~~~~~~~-~~v~vv~Is~d~-----~~~~~~~~~~~~~~   89 (192)
T 2h01_A           17 DNTFGEVSLSDFIGKKYVLLYFYPLD-FTFVCPSEIIALDKALDSFKE-RNVELLGCSVDS-----KFTHLAWKKTPLSQ   89 (192)
T ss_dssp             TSCEEEEEGGGGTTTCEEEEEECSCS-SCSSCCHHHHHHHHTHHHHHH-TTEEEEEEESSC-----HHHHHHHHTSCGGG
T ss_pred             CCceeEEeHHHHcCCCeEEEEEECCC-CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEeCC-----HHHHHHHHHhHHhh
Confidence            56  78999999 9999999999 99 9965  678889999999863 579999999732     124455554332  


Q ss_pred             ----CCCceeecCCCCCcHHHHHHHHHhhccC-----CceEEEEECCCCceecc
Q 046837          391 ----RMPWYSIQDPAMIQPAVIKYVKEEWKYS-----KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       391 ----~MPWyAVpf~~~i~~~~~r~ike~f~~~-----~iP~LVvL~pqGkv~~~  435 (658)
                          .+||..+.-++       +.+.+.|++.     .+|..+++|++|+++..
T Consensus        90 ~~~~~~~~~~l~D~~-------~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~  136 (192)
T 2h01_A           90 GGIGNIKHTLISDIS-------KSIARSYDVLFNESVALRAFVLIDKQGVVQHL  136 (192)
T ss_dssp             TCCCSCSSEEEECTT-------SHHHHHTTCEETTTEECCEEEEECTTSBEEEE
T ss_pred             CCccCCCcCeEECCc-------HHHHHHhCCcCcCCceeeEEEEEcCCCEEEEE
Confidence                45555443322       2355669998     89999999999999865

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.51  E-value=5.6e-07  Score=84.23  Aligned_cols=116  Identities=9%  Similarity=0.051  Sum_probs=76.2

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccC-CCc-chh-hHHHHHHhhcC
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDG-SID-RQQ-ALDKFKNLQKR  391 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~-s~~-W~d-de~~F~~~~~~  391 (658)
                      ..+|+.+++++++||.|+|+|.+. ||++|  +++.|.++|++++. .+++||.|++++. ..+ .+. +-++|-+- ..
T Consensus        34 ~~~G~~~~l~~~~gk~vll~F~at-wC~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~-~~  110 (183)
T 2obi_A           34 DIDGHMVNLDKYRGFVCIVTNVAS-QCGKTEVNYTQLVDLHARYAE-CGLRILAFPCNQFGKQEPGSNEEIKEFAAG-YN  110 (183)
T ss_dssp             BTTSCEEEGGGGTTSEEEEEEECS-SSTTHHHHHHHHHHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHT-TT
T ss_pred             cCCCCEeeHHHcCCCEEEEEEeCC-CCCCcHHHHHHHHHHHHHHhc-CCeEEEEEECCCCCCCCCCCHHHHHHHHHH-cC
Confidence            356788999999999999999999 99765  67789999999874 4699999997420 001 122 33444322 23


Q ss_pred             CCceeec---CCCCCcHHHHHHHHHhh---c-----cCCceEEEEECCCCceecc
Q 046837          392 MPWYSIQ---DPAMIQPAVIKYVKEEW---K-----YSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       392 MPWyAVp---f~~~i~~~~~r~ike~f---~-----~~~iP~LVvL~pqGkv~~~  435 (658)
                      .+|..+.   .......+..+++++..   +     ++.+|+.+++|++|+++..
T Consensus       111 ~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~  165 (183)
T 2obi_A          111 VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR  165 (183)
T ss_dssp             CCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEE
T ss_pred             CCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEE
Confidence            4444332   11111113455555443   3     4457999999999999864

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.50  E-value=2.3e-07  Score=90.73  Aligned_cols=105  Identities=16%  Similarity=0.208  Sum_probs=78.1

Q ss_pred             CCCCcEEecccccCcEEEEEEe-cCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh-c--
Q 046837          317 GETRTTVQIHVLKKKHVLLLIS-RPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ-K--  390 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfS-a~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~-~--  390 (658)
                      +.+|+.|.+++++||.|+|+|- +. ||++  .+++.|.++|++++. .+++||.|++++     .++..+|-+-+ .  
T Consensus        43 ~~~g~~v~l~d~~Gk~vll~F~pa~-~Cp~C~~~~~~l~~l~~~~~~-~~v~vv~Is~D~-----~~~~~~~~~~~~~~~  115 (220)
T 1zye_A           43 SGEFKEISLDDFKGKYLVLFFYPLD-FTFVCPTEIIAFSDKASEFHD-VNCEVVAVSVDS-----HFSHLAWINTPRKNG  115 (220)
T ss_dssp             SSSEEEEEGGGGTTSEEEEEECSCT-TCSSSHHHHHHHHHHHHHHHH-TTEEEEEEESSC-----HHHHHHHHTSCGGGT
T ss_pred             CCCCcEEEHHHhCCCeEEEEEECCC-CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCC-----HHHHHHHHHHHHHhC
Confidence            5577899999999999999999 99 9965  567889999999863 579999999832     12444554322 1  


Q ss_pred             ---CCCceeecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceecc
Q 046837          391 ---RMPWYSIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       391 ---~MPWyAVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~  435 (658)
                         .++|..+.-++       +.+.+.|++.      .+|.++++|++|+++..
T Consensus       116 g~~~~~fp~l~D~~-------~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~  162 (220)
T 1zye_A          116 GLGHMNIALLSDLT-------KQISRDYGVLLEGPGLALRGLFIIDPNGVIKHL  162 (220)
T ss_dssp             CCCSCSSEEEECTT-------SHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             CCcCCceEEEECCc-------HHHHHHhCCeecCCCcccceEEEECCCCEEEEE
Confidence               45555443322       3455669998      99999999999999764

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.50  E-value=5.6e-07  Score=79.13  Aligned_cols=107  Identities=7%  Similarity=0.052  Sum_probs=73.5

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCc-chhhHHHHHHhhcCCCc
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSID-RQQALDKFKNLQKRMPW  394 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~-W~dde~~F~~~~~~MPW  394 (658)
                      .+|+.+..+.++||.|+|+|.+. ||++|  +.+.|.++|++++.+  ++++.|++.+.... -.+.-.+|-.- ..++|
T Consensus        17 ~~g~~~~~~~~~gk~~lv~f~~~-~C~~C~~~~~~l~~l~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~   92 (148)
T 2b5x_A           17 LNGEVTREQLIGEKPTLIHFWSI-SCHLCKEAMPQVNEFRDKYQDQ--LNVVAVHMPRSEDDLDPGKIKETAAE-HDITQ   92 (148)
T ss_dssp             ESCCCCHHHHTTTSCEEEEEECT-TCHHHHHHHHHHHHHHHHHTTT--SEEEEEECCCSTTTSSHHHHHHHHHH-TTCCS
T ss_pred             ccCcccchhhcCCCEEEEEEEcC-CCHHHHHHhHHHHHHHHHhcCC--cEEEEEEcCCCccccCHHHHHHHHHH-cCCCc
Confidence            35677999999999999999999 99765  566799999988643  99999997421100 01122333322 23454


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      ..+.-++       ..+.+.|++.+.|+++++|++|+++..
T Consensus        93 ~~~~d~~-------~~~~~~~~v~~~P~~~lid~~G~i~~~  126 (148)
T 2b5x_A           93 PIFVDSD-------HALTDAFENEYVPAYYVFDKTGQLRHF  126 (148)
T ss_dssp             CEEECSS-------CHHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred             ceEECCc-------hhHHHHhCCCCCCEEEEECCCCcEEEE
Confidence            4332221       234566999999999999999998763

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.47  E-value=6.3e-07  Score=84.43  Aligned_cols=103  Identities=12%  Similarity=0.163  Sum_probs=73.6

Q ss_pred             CCCcEEecccccCcEEEEEEe-cCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837          318 ETRTTVQIHVLKKKHVLLLIS-RPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW  394 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfS-a~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW  394 (658)
                      .+|+.|.+++++||.|+|+|- +. ||++  .+++.|.++|++++ ..+++||.|+.++     .+...+|-+-+ .+||
T Consensus        39 ~~G~~v~l~d~~Gk~vvl~f~~~~-~c~~C~~el~~l~~l~~~~~-~~~~~vv~Vs~D~-----~~~~~~~~~~~-~~~f  110 (179)
T 3ixr_A           39 SGSTCKTLSDYTNQWLVLYFYPKD-NTPGSSTEGLEFNLLLPQFE-QINATVLGVSRDS-----VKSHDSFCAKQ-GFTF  110 (179)
T ss_dssp             GGGEEECGGGGTTSEEEEEECSCT-TSHHHHHHHHHHHHHHHHHH-TTTEEEEEEESCC-----HHHHHHHHHHH-TCCS
T ss_pred             CCCCEEeHHHHCCCCEEEEEEcCC-CCCchHHHHHHHHHHHHHHH-HCCCEEEEEcCCC-----HHHHHHHHHHc-CCce
Confidence            467889999999998877776 88 9965  56778999999997 4579999999732     12555665432 4555


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccCC------------ceEEEEECCCCceecc
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYSK------------KAIIVSVDPQGRILNQ  435 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~~------------iP~LVvL~pqGkv~~~  435 (658)
                      ..+.-++   .    .+.+.|++..            .|..+++||+|+++..
T Consensus       111 ~~l~D~~---~----~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~  156 (179)
T 3ixr_A          111 PLVSDSD---A----ILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEA  156 (179)
T ss_dssp             CEEECTT---C----HHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEE
T ss_pred             EEEECCc---h----HHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEE
Confidence            4443322   2    3344577753            6889999999999753

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.47  E-value=7.2e-07  Score=87.93  Aligned_cols=103  Identities=16%  Similarity=0.200  Sum_probs=76.2

Q ss_pred             CC--cEEecccc-cCcEEEEEEe-cCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc--
Q 046837          319 TR--TTVQIHVL-KKKHVLLLIS-RPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK--  390 (658)
Q Consensus       319 ~~--~kV~Is~L-~gK~VlLyfS-a~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~--  390 (658)
                      +|  +.|.++++ +||.|+|+|- +. ||+  +.+++.|.++|++++. .+++||.|+.++     .+..+.|-+-+.  
T Consensus        42 ~G~~~~v~L~d~~~Gk~vvl~F~pat-wCp~C~~e~p~l~~l~~~~~~-~~v~vv~Is~D~-----~~~~~~~~~~~~~~  114 (221)
T 2c0d_A           42 NNEIINVDLSSFIGQKYCCLLFYPLN-YTFVCPTEIIEFNKHIKDFEN-KNVELLGISVDS-----VYSHLAWKNMPIEK  114 (221)
T ss_dssp             TSCEEEEEGGGGTTTCEEEEEECCCC-TTTCCHHHHHHHHHTHHHHHH-TTEEEEEEESSC-----HHHHHHHHHSCGGG
T ss_pred             CCCccEEeHHHHcCCCeEEEEEEcCC-CCCchHHHHHHHHHHHHHHHH-CCCEEEEEeCCC-----HHHHHHHHHHhhhh
Confidence            56  78999999 9999999998 99 995  5678889999999863 579999999832     124555655442  


Q ss_pred             ----CCCceeecCCCCCcHHHHHHHHHhhcc-----CCceEEEEECCCCceecc
Q 046837          391 ----RMPWYSIQDPAMIQPAVIKYVKEEWKY-----SKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       391 ----~MPWyAVpf~~~i~~~~~r~ike~f~~-----~~iP~LVvL~pqGkv~~~  435 (658)
                          .++|..+.-++       ..+.+.|++     ...|..+++|++|+++..
T Consensus       115 ~g~~~~~fp~l~D~~-------~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~  161 (221)
T 2c0d_A          115 GGIGNVEFTLVSDIN-------KDISKNYNVLYDNSFALRGLFIIDKNGCVRHQ  161 (221)
T ss_dssp             TCCCSCSSEEEECTT-------SHHHHHTTCEETTTEECEEEEEECTTSBEEEE
T ss_pred             cCccCCceEEEECCc-------hHHHHHcCCcccCCCccceEEEECCCCeEEEE
Confidence                45664443221       234455887     368999999999999865

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.46  E-value=2.4e-07  Score=82.86  Aligned_cols=106  Identities=17%  Similarity=0.160  Sum_probs=75.9

Q ss_pred             cCCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837          316 DGETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP  393 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP  393 (658)
                      ...+|+.+.+++++||.|+|+|.+. ||+.|  +.+.|.+++++++. .++.||.|++...  + .+.-++|-.- ..+|
T Consensus        14 ~~~~g~~~~l~~~~gk~~lv~f~~~-~C~~C~~~~~~l~~l~~~~~~-~~~~vv~v~~~~~--~-~~~~~~~~~~-~~~~   87 (153)
T 2l5o_A           14 PDLHGKTVSNADLQGKVTLINFWFP-SCPGCVSEMPKIIKTANDYKN-KNFQVLAVAQPID--P-IESVRQYVKD-YGLP   87 (153)
T ss_dssp             ECTTSCEEEHHHHTTCEEEEEEECT-TCTTHHHHHHHHHHHHHHGGG-TTEEEEEEECTTS--C-HHHHHHHHHH-TTCC
T ss_pred             ecCCCCCccHHHhCCCEEEEEEECC-CCccHHHHHHHHHHHHHHhcc-CCeEEEEEecCCC--C-HHHHHHHHHH-cCCC
Confidence            3456788999999999999999999 99875  46679999998863 4799999986210  0 1133344332 3556


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                      |..+.-++       ..+.+.|++.+.|+++++|++|+++.
T Consensus        88 ~~~~~d~~-------~~~~~~~~i~~~P~~~lid~~G~i~~  121 (153)
T 2l5o_A           88 FTVMYDAD-------KAVGQAFGTQVYPTSVLIGKKGEILK  121 (153)
T ss_dssp             SEEEECSS-------CHHHHHHTCCSSSEEEEECSSSCCCE
T ss_pred             ceEEcCch-------HHHHHHcCCCccCeEEEECCCCcEEE
Confidence            54433222       23556699999999999999999864

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.44  E-value=2.1e-06  Score=80.30  Aligned_cols=115  Identities=14%  Similarity=0.208  Sum_probs=77.0

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCC-cc-h-hhHHHHHH--hh
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSI-DR-Q-QALDKFKN--LQ  389 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~-~W-~-dde~~F~~--~~  389 (658)
                      ..+|+.|++++++||.|+|+|-+. ||++|  +++.|.++|++++. .+++||-|++++-.. +- + ++-++|-.  +.
T Consensus        25 d~~G~~v~l~~~~Gk~vlv~F~at-wC~~C~~~~p~l~~l~~~~~~-~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~  102 (180)
T 3kij_A           25 DAKGRTVSLEKYKGKVSLVVNVAS-DCQLTDRNYLGLKELHKEFGP-SHFSVLAFPCNQFGESEPRPSKEVESFARKNYG  102 (180)
T ss_dssp             BTTSCEEEGGGGTTSEEEEEEECS-SSTTHHHHHHHHHHHHHHHTT-TSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHC
T ss_pred             cCCCCEecHHHcCCCEEEEEEEec-CCCCcHHHHHHHHHHHHHhcc-CCeEEEEEECCccccCCCCCHHHHHHHHHHhcC
Confidence            356778999999999999999999 99764  67789999999863 469999999742000 00 1 23344543  33


Q ss_pred             cCCCceeecC-CCCCcHHHHHHHHHhhccCCceE----EEEECCCCceecc
Q 046837          390 KRMPWYSIQD-PAMIQPAVIKYVKEEWKYSKKAI----IVSVDPQGRILNQ  435 (658)
Q Consensus       390 ~~MPWyAVpf-~~~i~~~~~r~ike~f~~~~iP~----LVvL~pqGkv~~~  435 (658)
                      -..|.++-.. .+.......+++....  .+.|.    .+++|++|+++..
T Consensus       103 ~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~p~~~~~~~lid~~G~i~~~  151 (180)
T 3kij_A          103 VTFPIFHKIKILGSEGEPAFRFLVDSS--KKEPRWNFWKYLVNPEGQVVKF  151 (180)
T ss_dssp             CCSCBBCCCCCSSTTCCHHHHHHHHHH--TCCCSSTTCEEEECTTSCEEEE
T ss_pred             CCCceeeeeeccCccccHHHHHHHhcC--CCCccccceEEEECCCCCEEEE
Confidence            4455544111 1111223556666543  47898    9999999999754

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.42  E-value=7.3e-07  Score=86.95  Aligned_cols=103  Identities=15%  Similarity=0.151  Sum_probs=77.7

Q ss_pred             CC--cEEecccc-cCcEEEEEEe-cCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc--
Q 046837          319 TR--TTVQIHVL-KKKHVLLLIS-RPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK--  390 (658)
Q Consensus       319 ~~--~kV~Is~L-~gK~VlLyfS-a~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~--  390 (658)
                      +|  +.|.++++ +||.|+|+|- +. ||++|  +++.|.++|++++ +.+++||.|++++     .+...+|-+-+.  
T Consensus        38 ~G~~~~v~l~d~~~gk~vvl~F~pa~-~C~~C~~~~~~l~~l~~~~~-~~~v~vv~Is~D~-----~~~~~~~~~~~~~~  110 (213)
T 2i81_A           38 DNSFGEVNLTQFIGKKYVLLYFYPLD-FTFVCPSEIIALDKALDAFH-ERNVELLGCSVDS-----KYTHLAWKKTPLAK  110 (213)
T ss_dssp             TSCEEEEEGGGGTTTCEEEEEECSCT-TSSHHHHHHHHHHHTHHHHH-HTTEEEEEEESSC-----HHHHHHHHSSCGGG
T ss_pred             CCceeEEeHHHHcCCCeEEEEEEcCC-CCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCC-----HHHHHHHHHHHHhh
Confidence            56  78999999 9999999999 99 99764  6778999999986 3579999999732     124455554332  


Q ss_pred             ----CCCceeecCCCCCcHHHHHHHHHhhccC-----CceEEEEECCCCceecc
Q 046837          391 ----RMPWYSIQDPAMIQPAVIKYVKEEWKYS-----KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       391 ----~MPWyAVpf~~~i~~~~~r~ike~f~~~-----~iP~LVvL~pqGkv~~~  435 (658)
                          .+||..+--++       +.+.+.|++.     ..|..+++|++|+++..
T Consensus       111 ~g~~~~~fp~l~D~~-------~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~  157 (213)
T 2i81_A          111 GGIGNIKHTLLSDIT-------KSISKDYNVLFDDSVSLRAFVLIDMNGIVQHL  157 (213)
T ss_dssp             TCCCSCSSEEEECTT-------SHHHHHTTCEETTTEECEEEEEECTTSBEEEE
T ss_pred             CCccCCCceEEECCc-------hHHHHHhCCccccCCcccEEEEECCCCEEEEE
Confidence                56775554322       2445569998     89999999999999865

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.42  E-value=1.1e-06  Score=84.11  Aligned_cols=101  Identities=14%  Similarity=0.191  Sum_probs=75.3

Q ss_pred             cEEecccccCcEEEEEEe-cCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc------C
Q 046837          321 TTVQIHVLKKKHVLLLIS-RPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK------R  391 (658)
Q Consensus       321 ~kV~Is~L~gK~VlLyfS-a~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~------~  391 (658)
                      +.+.+++++||.|+|+|- +. ||++|  +++.|.++|++++. .+++||.|++++     .+...+|-+-+.      .
T Consensus        27 ~~v~l~~~~gk~vvl~F~~~~-~C~~C~~~~~~l~~l~~~~~~-~~v~vi~Is~D~-----~~~~~~~~~~~~~~~~~~~   99 (202)
T 1uul_A           27 KKVALTSYKGKWLVLFFYPMD-FTFVCPTEICQFSDRVKEFSD-IGCEVLACSMDS-----EYSHLAWTSIERKRGGLGQ   99 (202)
T ss_dssp             EEEEGGGGTTSEEEEEECSCT-TCSHHHHHHHHHHHTHHHHHT-TTEEEEEEESSC-----HHHHHHHHHSCGGGTCCCS
T ss_pred             cEEEHHHhCCCeEEEEEECCC-CCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCCC-----HHHHHHHHHHHHhhCCCCC
Confidence            789999999999999999 99 99765  57789999999863 579999999732     124445544331      4


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceecc
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~  435 (658)
                      ++|..+.-++       +.+.+.|++.      .+|..+++|++|+++..
T Consensus       100 ~~~p~l~D~~-------~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~  142 (202)
T 1uul_A          100 MNIPILADKT-------KCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQI  142 (202)
T ss_dssp             CSSCEEECTT-------CHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             CceeEEECCc-------hHHHHHcCCccCCCCceeeEEEEECCCCEEEEE
Confidence            5554443322       2345568998      99999999999999865

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.42  E-value=1.5e-06  Score=80.08  Aligned_cols=103  Identities=8%  Similarity=0.045  Sum_probs=74.1

Q ss_pred             CCCCcEEecccccCcEEEEEEe-cCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC-
Q 046837          317 GETRTTVQIHVLKKKHVLLLIS-RPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM-  392 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfS-a~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M-  392 (658)
                      ..+|+.|++++++||.|+|+|= +. ||++  .+++.|.++|+++   .+++||.|+.++     .+..++|-+-+ .. 
T Consensus        29 ~~~G~~v~l~~~~gk~vvl~F~~~~-~c~~C~~~~~~l~~~~~~~---~~v~vv~is~d~-----~~~~~~~~~~~-~~~   98 (163)
T 1psq_A           29 TTDLSKKSLADFDGKKKVLSVVPSI-DTGICSTQTRRFNEELAGL---DNTVVLTVSMDL-----PFAQKRWCGAE-GLD   98 (163)
T ss_dssp             CTTSCEEEGGGGTTSEEEEEECSCT-TSHHHHHHHHHHHHHTTTC---TTEEEEEEESSC-----HHHHHHHHHHH-TCT
T ss_pred             cCCCcEeeHHHhCCCEEEEEEECCC-CCCccHHHHHHHHHHHHHc---CCcEEEEEECCC-----HHHHHHHHHhc-CCC
Confidence            4578899999999999999996 57 9965  5677899999988   689999999732     12455565543 34 


Q ss_pred             CceeecC-CCCCcHHHHHHHHHhhccC----Cc--eEEEEECCCCceeccc
Q 046837          393 PWYSIQD-PAMIQPAVIKYVKEEWKYS----KK--AIIVSVDPQGRILNQN  436 (658)
Q Consensus       393 PWyAVpf-~~~i~~~~~r~ike~f~~~----~i--P~LVvL~pqGkv~~~n  436 (658)
                      +|..+.- ++   .    .+.+.|++.    |.  |..+++|++|+++...
T Consensus        99 ~~~~l~D~~~---~----~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~  142 (163)
T 1psq_A           99 NAIMLSDYFD---H----SFGRDYALLINEWHLLARAVFVLDTDNTIRYVE  142 (163)
T ss_dssp             TSEEEECTTT---C----HHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEE
T ss_pred             CcEEecCCch---h----HHHHHhCCccccCCceEEEEEEEcCCCeEEEEE
Confidence            5543332 21   2    344457776    44  9999999999997653

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.41  E-value=8.3e-07  Score=79.33  Aligned_cols=99  Identities=18%  Similarity=0.152  Sum_probs=70.9

Q ss_pred             cEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeec
Q 046837          321 TTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQ  398 (658)
Q Consensus       321 ~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVp  398 (658)
                      +.+.+++++||.|+|+|.+. ||++|  +.+.|.++|++    +++++|.|++.+.    .+.-.+|-.-+ .++|..+.
T Consensus        33 ~~~~l~~~~gk~~ll~f~~~-~C~~C~~~~~~l~~l~~~----~~v~~v~v~~~~~----~~~~~~~~~~~-~~~~~~~~  102 (156)
T 1kng_A           33 PGLDPAAFKGKVSLVNVWAS-WCVPCHDEAPLLTELGKD----KRFQLVGINYKDA----ADNARRFLGRY-GNPFGRVG  102 (156)
T ss_dssp             CCBCGGGGTTSCEEEEEECT-TCHHHHHHHHHHHHHTTC----TTSEEEEEEESCC----HHHHHHHHHHH-CCCCSEEE
T ss_pred             ceechHHhCCCEEEEEEEcc-cCHhHHHHHHHHHHHHhc----CCeEEEEEECCCC----HHHHHHHHHHc-CCCCceee
Confidence            78999999999999999999 99775  45567777654    6799999998431    11334443322 45665333


Q ss_pred             CCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          399 DPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       399 f~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      ...      ...+.+.|++.+.|+.+++|++|+++..
T Consensus       103 ~d~------~~~~~~~~~v~~~P~~~~id~~G~i~~~  133 (156)
T 1kng_A          103 VDA------NGRASIEWGVYGVPETFVVGREGTIVYK  133 (156)
T ss_dssp             EET------TSHHHHHTTCCSSCEEEEECTTSBEEEE
T ss_pred             eCc------hhHHHHhcCcCccCeEEEEcCCCCEEEE
Confidence            322      1235567999999999999999998753

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.41  E-value=5.4e-07  Score=83.84  Aligned_cols=108  Identities=15%  Similarity=0.079  Sum_probs=74.8

Q ss_pred             CCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCC-----CCeeEEEEecccCCCcchhhHHHHHHhhcC
Q 046837          319 TRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKES-----KECRIVWLPIVDGSIDRQQALDKFKNLQKR  391 (658)
Q Consensus       319 ~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~-----~~fEIVwIpivD~s~~W~dde~~F~~~~~~  391 (658)
                      +|+.+.++.++||.|+|+|-+. ||++|  +.+.|.++|++++.+     .+++||.|++.+.   -.+.-++|-.. ..
T Consensus        48 ~g~~~~l~~~~gk~vlv~F~a~-~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~---~~~~~~~~~~~-~~  122 (183)
T 3lwa_A           48 EGTQINLSDFENQVVILNAWGQ-WCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDY---SRDIAQDFVTD-NG  122 (183)
T ss_dssp             TTCEEEGGGGTTSEEEEEEECT-TCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCC---CHHHHHHHHHH-TT
T ss_pred             CCcEecHHHhCCCEEEEEEECC-cCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCC---CHHHHHHHHHH-cC
Confidence            7789999999999999999999 99765  567899999998643     2449999997320   01233344332 25


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      +||..+.-++   ....+.+ ..|++.++|..+++|++|+++..
T Consensus       123 ~~~~~~~d~~---~~~~~~~-~~~~v~~~P~~~lid~~G~i~~~  162 (183)
T 3lwa_A          123 LDYPSIYDPP---FMTAASL-GGVPASVIPTTIVLDKQHRPAAV  162 (183)
T ss_dssp             CCSCEEECTT---CGGGGGT-TTCCTTCCSEEEEECTTSCEEEE
T ss_pred             CCccEEECCc---chHHHHh-ccCCCCCCCeEEEECCCCcEEEE
Confidence            6666664433   1222221 12578999999999999999753

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.41  E-value=3.4e-07  Score=85.70  Aligned_cols=109  Identities=11%  Similarity=0.064  Sum_probs=75.6

Q ss_pred             CCCCcEEecccccCcE-EEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCC-cc-h-hhHHHHHHhhc
Q 046837          317 GETRTTVQIHVLKKKH-VLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSI-DR-Q-QALDKFKNLQK  390 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~-VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~-~W-~-dde~~F~~~~~  390 (658)
                      ..+|+.+.+++++||. |+|+|.+. ||++|  +++.|.++|++.+. .+++||.|++++... +. + +.-..|-.-+ 
T Consensus        32 ~~~G~~~~l~~~~gk~~vlv~F~a~-~C~~C~~~~~~l~~l~~~~~~-~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~-  108 (196)
T 2ywi_A           32 VIDGNVVRLEDVKSDAATVIMFICN-HCPFVKHVQHELVRLANDYMP-KGVSFVAINSNDAEQYPEDSPENMKKVAEEL-  108 (196)
T ss_dssp             TTTCCEEEHHHHCCSSEEEEEECCS-SCHHHHHHHHHHHHHHHHHGG-GTCEEEEEECSCTTTCGGGSHHHHHHHHHHH-
T ss_pred             cCCCCEEeHHHhCCCCeEEEEEeCC-CCccHHHHHHHHHHHHHHHHh-CCcEEEEEECCccccccccCHHHHHHHHHHc-
Confidence            5678899999999996 99999999 99764  67789999999864 369999999842100 00 1 1333443322 


Q ss_pred             CCCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          391 RMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       391 ~MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      .++|..+.-++   .    .+.+.|++.+.|+++++|++|+++..
T Consensus       109 ~~~~~~~~d~~---~----~~~~~~~v~~~P~~~lid~~G~i~~~  146 (196)
T 2ywi_A          109 GYPFPYLYDET---Q----EVAKAYDAACTPDFYIFDRDLKCVYR  146 (196)
T ss_dssp             TCCSCEEECSS---C----HHHHHHTCCEESEEEEEETTCBEEEE
T ss_pred             CCCceEEECCc---h----HHHHHhCCCCCCeEEEEcCCCeEEEc
Confidence            23433322211   2    24456899999999999999999864

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.40  E-value=8.5e-07  Score=86.34  Aligned_cols=103  Identities=9%  Similarity=0.100  Sum_probs=75.1

Q ss_pred             CCcEEecccccCcEEEEEEe-cCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc-----
Q 046837          319 TRTTVQIHVLKKKHVLLLIS-RPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK-----  390 (658)
Q Consensus       319 ~~~kV~Is~L~gK~VlLyfS-a~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~-----  390 (658)
                      +|+.|.+++++||.|+|+|- +. ||++  .+++.|.++|++++. .+++||.|++++     .+....|-+-+.     
T Consensus        37 ~g~~v~l~d~~Gk~vvl~F~pat-~C~~C~~e~~~l~~l~~~~~~-~~v~vv~Is~D~-----~~~~~~~~~~~~~~~g~  109 (211)
T 2pn8_A           37 EFKELKLTDYRGKYLVFFFYPLD-FTFVCPTEIIAFGDRLEEFRS-INTEVVACSVDS-----QFTHLAWINTPRRQGGL  109 (211)
T ss_dssp             EEEEEEGGGGTTSEEEEEECSCT-TSSHHHHHHHHHHHTHHHHHT-TTEEEEEEESSC-----HHHHHHHHTSCGGGTCC
T ss_pred             CCcEEEHHHhCCCeEEEEEECCC-CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCC-----HHHHHHHHHHhhhccCc
Confidence            46789999999999999998 99 9975  567789999999874 579999999832     124455654331     


Q ss_pred             -CCCceeecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceecc
Q 046837          391 -RMPWYSIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       391 -~MPWyAVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~  435 (658)
                       .++|..+--++       +.+.+.|++.      ..|..+++|++|+++..
T Consensus       110 ~~~~fp~l~D~~-------~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~  154 (211)
T 2pn8_A          110 GPIRIPLLSDLT-------HQISKDYGVYLEDSGHTLRGLFIIDDKGILRQI  154 (211)
T ss_dssp             CSCSSCEEECTT-------SHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             cCCceEEEECCc-------hHHHHHcCCcccCCCcccceEEEECCCCEEEEE
Confidence             34554332221       2345558884      59999999999999864

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.39  E-value=1.1e-06  Score=81.16  Aligned_cols=103  Identities=9%  Similarity=0.051  Sum_probs=73.8

Q ss_pred             cCCCCcEEecccccCcEEEEEEe-cCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837          316 DGETRTTVQIHVLKKKHVLLLIS-RPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM  392 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfS-a~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M  392 (658)
                      ...+|+.|++++++||.|+|+|= +. ||++|  +++.|.++|++    .+++||.||.++     .+..++|-+-+ .+
T Consensus        32 ~~~~G~~~~l~~~~Gk~vvl~f~~~~-~c~~C~~~~~~l~~~~~~----~~~~vv~is~d~-----~~~~~~~~~~~-~~  100 (166)
T 3p7x_A           32 LDNDLNQVTLADYAGKKKLISVVPSI-DTGVCDQQTRKFNSDASK----EEGIVLTISADL-----PFAQKRWCASA-GL  100 (166)
T ss_dssp             ECTTSCEEEGGGGTTSCEEEEECSCT-TSHHHHHHHHHHHHHSCT----TTSEEEEEESSC-----HHHHHHHHHHH-TC
T ss_pred             EcCCCCEEeHHHhCCCcEEEEEECCC-CCCccHHHHHHHHHHhhc----CCCEEEEEECCC-----HHHHHHHHHHc-CC
Confidence            34578899999999999888886 67 99665  67789999887    679999999732     12556676543 34


Q ss_pred             -CceeecCCCCCcHHHHHHHHHhhccCC------ceEEEEECCCCceecc
Q 046837          393 -PWYSIQDPAMIQPAVIKYVKEEWKYSK------KAIIVSVDPQGRILNQ  435 (658)
Q Consensus       393 -PWyAVpf~~~i~~~~~r~ike~f~~~~------iP~LVvL~pqGkv~~~  435 (658)
                       +|..+--+.  +.    .+.+.|++..      .|..+++|++|+++..
T Consensus       101 ~~~~~l~D~~--~~----~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~  144 (166)
T 3p7x_A          101 DNVITLSDHR--DL----SFGENYGVVMEELRLLARAVFVLDADNKVVYK  144 (166)
T ss_dssp             SSCEEEECTT--TC----HHHHHHTCEETTTTEECCEEEEECTTCBEEEE
T ss_pred             CceEEccCCc--hh----HHHHHhCCccccCCceeeEEEEECCCCeEEEE
Confidence             554443330  12    3444588875      8999999999999864

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.37  E-value=1.7e-06  Score=78.93  Aligned_cols=100  Identities=17%  Similarity=0.079  Sum_probs=71.1

Q ss_pred             CCcEEecccc-cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCce
Q 046837          319 TRTTVQIHVL-KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWY  395 (658)
Q Consensus       319 ~~~kV~Is~L-~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWy  395 (658)
                      +|+.+..+.+ +||.|+|+|.+. ||++|  +.+.|.+++++     ++++|.|++.+.    .+.-.+|-.-+ ..||.
T Consensus        39 ~g~~~~~~~~~~gk~vll~F~a~-~C~~C~~~~~~l~~l~~~-----~v~vv~v~~~~~----~~~~~~~~~~~-~~~~~  107 (168)
T 2b1k_A           39 PGQFYQADVLTQGKPVLLNVWAT-WCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDD----RQKAISWLKEL-GNPYA  107 (168)
T ss_dssp             TTCEEEGGGGCCSSCEEEEEECT-TCHHHHHHHHHHHHHHHT-----TCCEEEEEESCC----HHHHHHHHHHH-CCCCS
T ss_pred             CCcEeehhHhcCCCEEEEEEECC-CCHHHHHHHHHHHHHHHC-----CCEEEEEECCCC----hHHHHHHHHHc-CCCCc
Confidence            6778898885 999999999999 99765  46678888775     699999998431    12344454322 45664


Q ss_pred             eecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          396 SIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       396 AVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      .+-...  +    ..+.+.|++.+.|+.+++|++|+++..
T Consensus       108 ~~~~d~--~----~~~~~~~~v~~~P~~~lid~~G~i~~~  141 (168)
T 2b1k_A          108 LSLFDG--D----GMLGLDLGVYGAPETFLIDGNGIIRYR  141 (168)
T ss_dssp             EEEEET--T----CHHHHHHTCCSSSEEEEECTTSBEEEE
T ss_pred             eeeECc--c----hHHHHHcCccccCEEEEECCCCeEEEE
Confidence            322211  1    235567999999999999999999743

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.36  E-value=1.5e-06  Score=86.73  Aligned_cols=103  Identities=10%  Similarity=0.080  Sum_probs=76.2

Q ss_pred             CCcEEecccccCcEEEEEEec-CCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh------
Q 046837          319 TRTTVQIHVLKKKHVLLLISR-PDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ------  389 (658)
Q Consensus       319 ~~~kV~Is~L~gK~VlLyfSa-~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~------  389 (658)
                      +|+.|++++++||.|+|+|-+ . ||++  .+++.|.++|++++. .+++||.||.++     .+...+|-+..      
T Consensus        66 ~G~~vsLsd~~Gk~vvL~F~~~~-~cp~C~~el~~l~~l~~~~~~-~gv~vv~Is~D~-----~~~~~~~~~~~~~~~~~  138 (240)
T 3qpm_A           66 EFKELKLSDYRGKYLVFFFYPLD-FTFVCPTEIIAFSDRVHEFRA-INTEVVACSVDS-----QFTHLAWIITPRKQGGL  138 (240)
T ss_dssp             EEEEEEGGGGTTSEEEEEECSCT-TSSHHHHHHHHHHHHHHHHHT-TTEEEEEEESSC-----HHHHHHHHHSCGGGTCC
T ss_pred             CCcEEEHHHhCCCEEEEEEECCC-CCCchHHHHHHHHHHHHHHHH-CCCEEEEEECCC-----HHHHHHHHHHHHhhcCC
Confidence            466899999999999999988 7 9976  467789999999974 569999999732     12445665432      


Q ss_pred             cCCCceeecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceecc
Q 046837          390 KRMPWYSIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       390 ~~MPWyAVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~  435 (658)
                      ..+||..+.-++       +.+.+.|++.      ..|..+++||+|+++..
T Consensus       139 ~~~~fp~l~D~~-------~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~  183 (240)
T 3qpm_A          139 GPMKIPLLSDLT-------HQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQI  183 (240)
T ss_dssp             CSCSSCEEECTT-------SHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             CCCceeEEeCch-------HHHHHHhCCccccCCCccceEEEEcCCCeEEEE
Confidence            146665554332       2345558886      58999999999999865

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.36  E-value=1.9e-07  Score=85.67  Aligned_cols=103  Identities=8%  Similarity=0.050  Sum_probs=72.4

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCC-CChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC-
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDD-ISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM-  392 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~-~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M-  392 (658)
                      ..+|+.+++++++||.|+|+|-+. | |++|  +++.|.++|+++   .+++||.|+.++     .+..++|-+-+ .+ 
T Consensus        31 ~~~G~~~~l~~~~gk~~vl~F~~~-~~C~~C~~~~~~l~~l~~~~---~~~~vv~is~d~-----~~~~~~~~~~~-~~~  100 (167)
T 2jsy_A           31 TNSLEEKSLADMKGKVTIISVIPS-IDTGVCDAQTRRFNEEAAKL---GDVNVYTISADL-----PFAQARWCGAN-GID  100 (167)
T ss_dssp             BTTCCEEEHHHHTTSCEEEEECSC-STTSHHHHTHHHHHHHHHHH---SSCEEEEEECSS-----GGGTSCCGGGS-SCT
T ss_pred             CCCCCEeeHHHhCCCeEEEEEecC-CCCCchHHHHHHHHHHHHHc---CCCEEEEEECCC-----HHHHHHHHHhc-CCC
Confidence            457888999999999999999999 7 8664  577899999998   679999999832     01222233222 22 


Q ss_pred             CceeecC-CCCCcHHHHHHHHHhhccCC------ceEEEEECCCCceeccc
Q 046837          393 PWYSIQD-PAMIQPAVIKYVKEEWKYSK------KAIIVSVDPQGRILNQN  436 (658)
Q Consensus       393 PWyAVpf-~~~i~~~~~r~ike~f~~~~------iP~LVvL~pqGkv~~~n  436 (658)
                      +|..+.- ++       ..+.+.|++..      .|..+++|++|+++...
T Consensus       101 ~~~~~~d~~~-------~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~  144 (167)
T 2jsy_A          101 KVETLSDHRD-------MSFGEAFGVYIKELRLLARSVFVLDENGKVVYAE  144 (167)
T ss_dssp             TEEEEEGGGT-------CHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEE
T ss_pred             CceEeeCCch-------hHHHHHhCCccccCCceeeEEEEEcCCCcEEEEE
Confidence            3433322 11       23445588876      39999999999997653

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=98.35  E-value=5.8e-07  Score=86.80  Aligned_cols=104  Identities=12%  Similarity=0.144  Sum_probs=72.9

Q ss_pred             cCCCCcEEecccccCcEEEEEEe-cCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837          316 DGETRTTVQIHVLKKKHVLLLIS-RPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM  392 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfS-a~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M  392 (658)
                      ...+|+.|++++++||.|+|+|- +. ||+  +.+++.|.++|+++   .+++||.||.++     .+..++|-+-+ .+
T Consensus        64 ~d~~G~~v~L~d~~Gk~vvl~F~~~~-~c~~C~~e~~~l~~l~~~~---~~v~vv~Is~D~-----~~~~~~~~~~~-~~  133 (200)
T 3zrd_A           64 VAKDLSDVALSSFAGKRKVLNIFPSI-DTGVCAASVRKFNQLAGEL---ENTVVLCISSDL-----PFAQSRFCGAE-GL  133 (200)
T ss_dssp             ECTTSCEEEGGGGTTSEEEEEECSCC-CCSCCCHHHHHHHHHHHTS---TTEEEEEEESSC-----HHHHTTCTTTT-TC
T ss_pred             ECCCCCEEcHHHhCCCcEEEEEECCC-CCchhHHHHHHHHHHHHHh---CCCEEEEEECCC-----HHHHHHHHHHc-CC
Confidence            34577899999999999888886 66 985  56788899999998   579999999721     11333343322 34


Q ss_pred             -CceeecCCCCCcHHHHHHHHHhhccC-------C--ceEEEEECCCCceecc
Q 046837          393 -PWYSIQDPAMIQPAVIKYVKEEWKYS-------K--KAIIVSVDPQGRILNQ  435 (658)
Q Consensus       393 -PWyAVpf~~~i~~~~~r~ike~f~~~-------~--iP~LVvL~pqGkv~~~  435 (658)
                       ||..+.-+.  +.+    +.+.|++.       |  .|..+++|++|+++..
T Consensus       134 ~~f~~l~D~~--~~~----~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~  180 (200)
T 3zrd_A          134 SNVITLSTLR--GAD----FKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYS  180 (200)
T ss_dssp             TTEEEEETTS--CTH----HHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred             CCceEEecCc--hHH----HHHHhCceeecccCCCccccEEEEECCCCeEEEE
Confidence             555444331  123    34447764       3  5999999999999854

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.35  E-value=6.2e-07  Score=83.86  Aligned_cols=103  Identities=12%  Similarity=0.094  Sum_probs=71.3

Q ss_pred             cCCCCcEEecccccCcEEEEEEecCCC-CC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837          316 DGETRTTVQIHVLKKKHVLLLISRPDD-IS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM  392 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfSa~~~-~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M  392 (658)
                      ...+|+.+.+++++||.|+|+|-+. | |+  +.+++.|.++|++    .+++||.|++++     .+..++|-+-+ .+
T Consensus        30 ~~~~G~~v~l~~~~gk~vvl~F~~t-~~C~~C~~~~~~l~~l~~~----~~v~vv~Is~D~-----~~~~~~~~~~~-~~   98 (175)
T 1xvq_A           30 TGGDLGVISSDQFRGKSVLLNIFPS-VDTPVCATSVRTFDERAAA----SGATVLCVSKDL-----PFAQKRFCGAE-GT   98 (175)
T ss_dssp             ECTTSCEEEGGGGTTSCEEEEECSC-CCSSCCCHHHHHHHHHHHH----TTCEEEEEESSC-----HHHHTTCC------
T ss_pred             ECCCCCEEeHHHcCCCEEEEEEEeC-CCCchHHHHHHHHHHHHhh----cCCEEEEEECCC-----HHHHHHHHHHc-CC
Confidence            3457889999999999999999999 7 74  4678899999998    679999999732     11222232211 22


Q ss_pred             -CceeecCCCCCcHHHHHHHHHhhccCCc---------eEEEEECCCCceeccc
Q 046837          393 -PWYSIQDPAMIQPAVIKYVKEEWKYSKK---------AIIVSVDPQGRILNQN  436 (658)
Q Consensus       393 -PWyAVpf~~~i~~~~~r~ike~f~~~~i---------P~LVvL~pqGkv~~~n  436 (658)
                       +|..+.-++       ..+.+.|++...         |..+++|++|+++...
T Consensus        99 ~~~~~l~D~~-------~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~  145 (175)
T 1xvq_A           99 ENVMPASAFR-------DSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTE  145 (175)
T ss_dssp             -CEEEEECTT-------SSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEE
T ss_pred             CCceEeeCCH-------HHHHHHhCCcccccccCCcccceEEEECCCCeEEEEE
Confidence             343332221       234556888877         9999999999997653

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=98.33  E-value=2.7e-06  Score=78.62  Aligned_cols=104  Identities=13%  Similarity=0.142  Sum_probs=71.8

Q ss_pred             CCCCcEEecccccCcEEEEEEe-cCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC-
Q 046837          317 GETRTTVQIHVLKKKHVLLLIS-RPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM-  392 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfS-a~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M-  392 (658)
                      ..+|+.|.+++++||.|+|+|= +. ||+  +.+++.|.+.|+++   .+++||.||.++     .+..++|-+- ..+ 
T Consensus        30 ~~~G~~v~l~~~~gk~vvl~f~~~~-~c~~C~~e~~~l~~~~~~~---~~v~vv~Is~d~-----~~~~~~~~~~-~~~~   99 (165)
T 1q98_A           30 GNDLADVALNDFASKRKVLNIFPSI-DTGVCATSVRKFNQQAAKL---SNTIVLCISADL-----PFAQARFCGA-EGIE   99 (165)
T ss_dssp             CTTSCEEEGGGGTTSEEEEEECSCS-CSSCCCHHHHHHHHHHHHS---TTEEEEEEESSC-----HHHHTTCTTT-TTCT
T ss_pred             CCCCCEEehHHhCCCeEEEEEECCC-CCCccHHHHHHHHHHHHHc---CCCEEEEEeCCC-----HHHHHHHHHH-cCCC
Confidence            4578899999999999999885 78 986  46788899999998   689999999721     1122334332 234 


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccCC---------ceEEEEECCCCceeccc
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYSK---------KAIIVSVDPQGRILNQN  436 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~~---------iP~LVvL~pqGkv~~~n  436 (658)
                      ||..+--+.  +.+    +.+.|++..         .|..+++|++|+++...
T Consensus       100 ~~~~l~D~~--~~~----~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~  146 (165)
T 1q98_A          100 NAKTVSTFR--NHA----LHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQ  146 (165)
T ss_dssp             TEEEEECTT--CTH----HHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             ceEEeeccc--cch----HHHHhCceecccccCCccceeEEEEcCCCEEEEEE
Confidence            454333221  123    344577743         49999999999997653

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.33  E-value=3.5e-06  Score=79.02  Aligned_cols=112  Identities=13%  Similarity=0.202  Sum_probs=71.8

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCC-Ccc-hh-hHHHHHH--hh
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGS-IDR-QQ-ALDKFKN--LQ  389 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s-~~W-~d-de~~F~~--~~  389 (658)
                      ..+|+.+.+++++||.|+|+|.+. ||++|  +++.|.++|++++. .+++||.|++++.. .+. +. .-.+|-+  +.
T Consensus        36 ~~~G~~~~l~~~~Gk~vlv~F~at-wC~~C~~~~p~l~~l~~~~~~-~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~  113 (181)
T 2p31_A           36 NIRGKLVSLEKYRGSVSLVVNVAS-ECGFTDQHYRALQQLQRDLGP-HHFNVLAFPCNQFGQQEPDSNKEIESFARRTYS  113 (181)
T ss_dssp             BTTSCEEEGGGGTTSEEEEEEECS-SSTTHHHHHHHHHHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHC
T ss_pred             cCCCCEecHHHcCCCEEEEEEecc-CCCCcHHHHHHHHHHHHHhhc-CCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcC
Confidence            356788999999999999999999 99865  67789999999874 46999999984200 000 11 3334433  33


Q ss_pred             cCCCcee-ecCCCCCcHHHHHHHHHhhccCCce-------EEEEECCCCceecc
Q 046837          390 KRMPWYS-IQDPAMIQPAVIKYVKEEWKYSKKA-------IIVSVDPQGRILNQ  435 (658)
Q Consensus       390 ~~MPWyA-Vpf~~~i~~~~~r~ike~f~~~~iP-------~LVvL~pqGkv~~~  435 (658)
                      -..|.++ +........+..++     .+.+.|       +.+++|++|+++..
T Consensus       114 ~~~p~~~~~d~~g~~~~~~~~~-----~~~~~P~~~~~~~~~~lid~~G~i~~~  162 (181)
T 2p31_A          114 VSFPMFSKIAVTGTGAHPAFKY-----LAQTSGKEPTWNFWKYLVAPDGKVVGA  162 (181)
T ss_dssp             CCSCBBCCCCCSSTTSCHHHHH-----HHHHHSCCCCSTTCEEEECTTSCEEEE
T ss_pred             CCceeEeecccCCccchhhhhh-----hhhcCCCccccceeEEEEcCCCCEEEE
Confidence            3344333 11111001112222     344568       99999999999754

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.32  E-value=2.1e-06  Score=81.40  Aligned_cols=101  Identities=14%  Similarity=0.176  Sum_probs=73.7

Q ss_pred             cEEecccccCcEEEEEEe-cCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc---CCCc
Q 046837          321 TTVQIHVLKKKHVLLLIS-RPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK---RMPW  394 (658)
Q Consensus       321 ~kV~Is~L~gK~VlLyfS-a~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~---~MPW  394 (658)
                      +.|.+++++||.|+|+|= +. |||+  .+++.|.++|++++. .+++||.|+.++     .+..++|-+-+.   .++|
T Consensus        21 ~~v~l~~~~Gk~vvl~F~~~~-~Cp~C~~e~~~l~~~~~~~~~-~~v~vv~Is~d~-----~~~~~~~~~~~~~~~~~~f   93 (186)
T 1n8j_A           21 IEVTEKDTEGRWSVFFFYPAD-FTFVSPTELGDVADHYEELQK-LGVDVYSVSTDT-----HFTHKAWHSSSETIAKIKY   93 (186)
T ss_dssp             EEEEHHHHTTSEEEEEECSCT-TCSHHHHHHHHHHHHHHHHHH-TTEEEEEEESSC-----HHHHHHHHHHCTTGGGCCS
T ss_pred             eEEEHHHHCCCeEEEEEECCC-CCCccHHHHHHHHHHHHHHHH-CCCEEEEEECCC-----HHHHHHHHHHcCcccCCce
Confidence            789999999999999885 58 9975  567789999999863 579999999732     124556765442   5666


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccC----C--ceEEEEECCCCceecc
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYS----K--KAIIVSVDPQGRILNQ  435 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~----~--iP~LVvL~pqGkv~~~  435 (658)
                      ..+.-++   .+    +.+.|++.    |  .|..+++|++|+++..
T Consensus        94 p~l~D~~---~~----~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~  133 (186)
T 1n8j_A           94 AMIGDPT---GA----LTRNFDNMREDEGLADRATFVVDPQGIIQAI  133 (186)
T ss_dssp             EEEECTT---SH----HHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             eEEECCc---hH----HHHHhCCccCCCCceeeEEEEECCCCeEEEE
Confidence            5443322   23    34458876    3  6999999999999864

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.29  E-value=2.2e-06  Score=79.40  Aligned_cols=101  Identities=9%  Similarity=0.073  Sum_probs=72.0

Q ss_pred             CCCCcEEecccccCcEEEEEEe-cCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC-
Q 046837          317 GETRTTVQIHVLKKKHVLLLIS-RPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM-  392 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfS-a~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M-  392 (658)
                      ..+|+.+++++++||.|+|+|= +. ||++  .+++.|.++|+++   .+++||.|+.++     .+..++|-+-+ .. 
T Consensus        34 ~~~G~~~~l~~~~gk~vvl~f~~~~-~C~~C~~~~~~l~~~~~~~---~~v~vv~Is~d~-----~~~~~~~~~~~-~~~  103 (171)
T 2yzh_A           34 TKDLQEKIVGGAKDVVQVIITVPSL-DTPVCETETKKFNEIMAGM---EGVDVTVVSMDL-----PFAQKRFCESF-NIQ  103 (171)
T ss_dssp             ETTSCEEEESSCCSSEEEEEECSCT-TSHHHHHHHHHHHHHTTTC---TTEEEEEEESSC-----HHHHHHHHHHT-TCC
T ss_pred             CCCCCEeeHHHhCCCeEEEEEECCC-CCCchHHHHHHHHHHHHHc---CCceEEEEeCCC-----HHHHHHHHHHc-CCC
Confidence            4578899999999999999885 78 9965  5677899999988   689999999732     12445565432 33 


Q ss_pred             CceeecC-CCCCcHHHHHHHHHhhccC-------C--ceEEEEECCCCceecc
Q 046837          393 PWYSIQD-PAMIQPAVIKYVKEEWKYS-------K--KAIIVSVDPQGRILNQ  435 (658)
Q Consensus       393 PWyAVpf-~~~i~~~~~r~ike~f~~~-------~--iP~LVvL~pqGkv~~~  435 (658)
                      +|..+.- ++       ..+ +.|++.       +  .|..+++||+|+++..
T Consensus       104 ~~~~l~D~~~-------~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~  148 (171)
T 2yzh_A          104 NVTVASDFRY-------RDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYV  148 (171)
T ss_dssp             SSEEEECTTT-------CGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred             CeEEeecCcc-------CcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEE
Confidence            4433322 22       123 557774       2  6999999999999754

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.29  E-value=2.9e-06  Score=77.45  Aligned_cols=103  Identities=16%  Similarity=0.247  Sum_probs=74.0

Q ss_pred             cCCCCcEEecccccCc--EEEEEE-ecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc
Q 046837          316 DGETRTTVQIHVLKKK--HVLLLI-SRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK  390 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK--~VlLyf-Sa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~  390 (658)
                      ...+|+.|.+++++||  .|+|+| .+. |||+  .+++.|.++|++++.++  +||.|+.++     .+...+|-+-+ 
T Consensus        19 ~~~~G~~v~l~~~~gk~~~vvl~f~~~~-~c~~C~~~~~~l~~~~~~~~~~~--~vv~is~d~-----~~~~~~~~~~~-   89 (159)
T 2a4v_A           19 LNEDNDSISLKKITENNRVVVFFVYPRA-STPGSTRQASGFRDNYQELKEYA--AVFGLSADS-----VTSQKKFQSKQ-   89 (159)
T ss_dssp             ECTTSCEEEHHHHHHHCSEEEEEECSSS-SSHHHHHHHHHHHHHHHHHTTTC--EEEEEESCC-----HHHHHHHHHHH-
T ss_pred             ECCCCCEEeHHHHhCCCCeEEEEEcCCC-CCCCHHHHHHHHHHHHHHHHhCC--cEEEEeCCC-----HHHHHHHHHHh-
Confidence            3457789999999998  788886 688 9975  56778999999998655  999999732     12445565433 


Q ss_pred             CCCceeecCCCCCcHHHHHHHHHhhccCCce------EEEEECCCCceecc
Q 046837          391 RMPWYSIQDPAMIQPAVIKYVKEEWKYSKKA------IIVSVDPQGRILNQ  435 (658)
Q Consensus       391 ~MPWyAVpf~~~i~~~~~r~ike~f~~~~iP------~LVvL~pqGkv~~~  435 (658)
                      .++|..+--++       ..+.+.|++...|      ..+++ ++|+++..
T Consensus        90 ~~~~~~l~D~~-------~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~  132 (159)
T 2a4v_A           90 NLPYHLLSDPK-------REFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFK  132 (159)
T ss_dssp             TCSSEEEECTT-------CHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEE
T ss_pred             CCCceEEECCc-------cHHHHHhCCcccccCCccceEEEE-cCCEEEEE
Confidence            45665443322       2345569999988      77778 99999864

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.28  E-value=5.8e-06  Score=80.39  Aligned_cols=114  Identities=10%  Similarity=0.077  Sum_probs=76.1

Q ss_pred             CcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEeccc---CCCcchhhHHHHHHh-----h
Q 046837          320 RTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVD---GSIDRQQALDKFKNL-----Q  389 (658)
Q Consensus       320 ~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD---~s~~W~dde~~F~~~-----~  389 (658)
                      |+.|.+++++||.|+|+|-|. ||++|  +++.|.++|++.+. .+++||-||+.+   ......+.-.+|-.+     .
T Consensus        37 G~~v~l~~~~Gk~vlv~Fwat-wC~~C~~e~p~l~~l~~~~~~-~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~  114 (208)
T 2f8a_A           37 GEPVSLGSLRGKVLLIENVAS-LGGTTVRDYTQMNELQRRLGP-RGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGG  114 (208)
T ss_dssp             SSCEEGGGGTTSEEEEEEECS-SSTTHHHHHHHHHHHHHHHGG-GTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTT
T ss_pred             CCCccHHHcCCCEEEEEEECC-CCccHHHHHHHHHHHHHHccC-CCeEEEEEECCcccccCCCCHHHHHHHHHhcccccc
Confidence            788999999999999999999 99765  57889999999874 369999999841   100011234456542     2


Q ss_pred             cCCCceeecCCC---CCcHHHHHHHHHhhc-------------------------cCCceEEEEECCCCceecc
Q 046837          390 KRMPWYSIQDPA---MIQPAVIKYVKEEWK-------------------------YSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       390 ~~MPWyAVpf~~---~i~~~~~r~ike~f~-------------------------~~~iP~LVvL~pqGkv~~~  435 (658)
                      ...++..+.-.+   ....+..+++++.+.                         ++..|+.+++|++|+++..
T Consensus       115 ~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~  188 (208)
T 2f8a_A          115 FEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRR  188 (208)
T ss_dssp             CCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEE
T ss_pred             cccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEE
Confidence            233332221000   001245677776542                         4566999999999999754

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.24  E-value=1.4e-06  Score=92.26  Aligned_cols=109  Identities=10%  Similarity=0.063  Sum_probs=76.8

Q ss_pred             ccCCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchh---hHHHHHHhh
Q 046837          315 VDGETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQ---ALDKFKNLQ  389 (658)
Q Consensus       315 ~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~d---de~~F~~~~  389 (658)
                      +...+|+.+.+++++||.|+|+|.+. ||++|  +++.|.++|++++. .+++||.|++.+.  ..++   .-++|-+- 
T Consensus        67 L~d~dG~~vsLsdl~GK~vLl~F~at-wC~~C~~~~p~L~~l~~~~~~-~~v~vi~Vs~d~~--~~~d~~~~~~~~~~~-  141 (352)
T 2hyx_A           67 LNTPGNKPIDLKSLRGKVVLIDFWAY-SCINCQRAIPHVVGWYQAYKD-SGLAVIGVHTPEY--AFEKVPGNVAKGAAN-  141 (352)
T ss_dssp             ESSGGGCCCCGGGGTTSEEEEEEECT-TCHHHHHHHHHHHHHHHHHGG-GTEEEEEEECCSS--GGGGCHHHHHHHHHH-
T ss_pred             cCCCCCCEEcHHHhCCCEEEEEEECC-CChhHHHHHHHHHHHHHHhhc-CCeEEEEEECCcc--cccCCHHHHHHHHHH-
Confidence            34457788999999999999999999 99765  57789999999864 4699999987310  1112   23334322 


Q ss_pred             cCCCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          390 KRMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       390 ~~MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      ..++|..+--++       ..+.+.|++.++|+++++|++|+++..
T Consensus       142 ~~l~fpv~~D~~-------~~l~~~ygV~~~Pt~~lID~~G~Iv~~  180 (352)
T 2hyx_A          142 LGISYPIALDNN-------YATWTNYRNRYWPAEYLIDATGTVRHI  180 (352)
T ss_dssp             HTCCSCEEECTT-------SHHHHHTTCCEESEEEEECTTSBEEEE
T ss_pred             cCCCccEEeCCc-------HHHHHHcCCCccCEEEEEeCCCeEEEE
Confidence            234444332211       234566999999999999999999864

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=98.18  E-value=3.1e-06  Score=85.46  Aligned_cols=105  Identities=9%  Similarity=0.088  Sum_probs=75.6

Q ss_pred             CCCCcEEecccccCcEEEEEEe-cCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh----
Q 046837          317 GETRTTVQIHVLKKKHVLLLIS-RPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ----  389 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfS-a~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~----  389 (658)
                      ..+|+.|.+++++||.|+|+|= +. ||+  +.+++.|.++|++++. .+++||.||.++     .++..+|-+-.    
T Consensus        78 d~~G~~vsLsd~kGK~vvL~F~~a~-~cp~C~~el~~l~~l~~~~~~-~gv~vv~IS~D~-----~~~~~~~~~~~~~~~  150 (254)
T 3tjj_A           78 DGEFKELKLTDYRGKYLVFFFYPLD-FTFVCPTEIIAFGDRLEEFRS-INTEVVACSVDS-----QFTHLAWINTPRRQG  150 (254)
T ss_dssp             TTEEEEEEGGGGTTSEEEEEECSCT-TCSSCCHHHHHHHHTHHHHHT-TTEEEEEEESSC-----HHHHHHHHTSCGGGT
T ss_pred             CCCCcEEeHHHHCCCeEEEEEECCC-CCCchHHHHHHHHHHHHHHHH-cCCEEEEEcCCC-----HHHHHHHHHHHHHhc
Confidence            3356789999999999888886 77 985  5678889999999974 579999999732     12445665432    


Q ss_pred             --cCCCceeecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceecc
Q 046837          390 --KRMPWYSIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       390 --~~MPWyAVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~  435 (658)
                        ..++|..+.-++       ..+.+.|++.      ..|..++||++|++...
T Consensus       151 g~~~~~fp~l~D~~-------~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~  197 (254)
T 3tjj_A          151 GLGPIRIPLLSDLT-------HQISKDYGVYLEDSGHTLRGLFIIDDKGILRQI  197 (254)
T ss_dssp             SCCSCSSCEEECTT-------SHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             CCcccccceeeCcH-------HHHHHHcCCccccCCCccceEEEECCCCeEEEE
Confidence              145665444332       2344557774      47999999999999765

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.17  E-value=3.1e-06  Score=78.20  Aligned_cols=103  Identities=14%  Similarity=0.206  Sum_probs=71.0

Q ss_pred             CCCCcEEecccccCcEEEEEEe-cCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837          317 GETRTTVQIHVLKKKHVLLLIS-RPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP  393 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfS-a~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP  393 (658)
                      ..+|+.|++++++||.|+|+|= +. |||+|  +++.|.+.|++.+ ..++++|-||.++     .+..++|.+- ..+|
T Consensus        17 ~~~G~~~~l~d~~Gk~vvl~f~~~~-~c~~C~~e~~~l~~~~~~~~-~~~~~~v~vs~d~-----~~~~~~~~~~-~~~~   88 (157)
T 4g2e_A           17 DTELKKVKLSALKGKVVVLAFYPAA-FTQVCTKEMCTFRDSMAKFN-QVNAVVLGISVDP-----PFSNKAFKEH-NKLN   88 (157)
T ss_dssp             BTTSCEEEGGGGTTSCEEEEECSCT-TCCC------CCSCGGGGGG-GCSSEEEEEESSC-----HHHHHHHHHH-TTCC
T ss_pred             CCCCCEEeHHHHCCCeEEEEecCCC-CCCccccchhhccccccccc-ccCceEeeecccc-----hhHHHHHHHH-cCCc
Confidence            4578899999999999988886 88 99764  6677888888875 4678999999732     1255667653 3566


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccC-----------CceEEEEECCCCceec
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYS-----------KKAIIVSVDPQGRILN  434 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~-----------~iP~LVvL~pqGkv~~  434 (658)
                      |..+--++   .+    +.+.|++.           ..|+..|+|++|++..
T Consensus        89 ~p~l~D~~---~~----v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~  133 (157)
T 4g2e_A           89 FTILSDYN---RE----VVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRY  133 (157)
T ss_dssp             SEEEECTT---SH----HHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEE
T ss_pred             EEEEEcCC---cH----HHHHcCCccccccCCCcceeeeeEEEECCCCEEEE
Confidence            65554332   23    33446653           3688999999999964

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.12  E-value=1.8e-05  Score=77.99  Aligned_cols=120  Identities=12%  Similarity=0.065  Sum_probs=76.7

Q ss_pred             cccCCCCcEEecccccCcEEEEEEecCCCCChH-HHHHHHHHHHHhcCCCCeeEEEEecccC--CCcchh-hHHHHHH--
Q 046837          314 LVDGETRTTVQIHVLKKKHVLLLISRPDDISQE-EILFLSNMYKDLKESKECRIVWLPIVDG--SIDRQQ-ALDKFKN--  387 (658)
Q Consensus       314 l~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~-~~~~L~~iY~~lk~~~~fEIVwIpivD~--s~~W~d-de~~F~~--  387 (658)
                      +.+-.+|+.|++++++||.|+|+|-|. ||+++ +.+.|.++|++.+. .+++||-||..+.  ..+-+. .-.+|-+  
T Consensus        40 l~d~~~G~~v~Lsd~~GKvvll~FwAt-~C~~c~e~p~L~~l~~~~~~-~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~  117 (215)
T 2i3y_A           40 AIALNKNEYVSFKQYVGKHILFVNVAT-YCGLTAQYPELNALQEELKP-YGLVVLGFPCNQFGKQEPGDNKEILPGLKYV  117 (215)
T ss_dssp             EEBSSSSCEEEGGGGTTSEEEEEEECS-SSGGGGGHHHHHHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHHT
T ss_pred             eeeCCCCCEEcHHHhCCCEEEEEEeCC-CCCChHhHHHHHHHHHHhcc-CCeEEEEEEccccCcCCCCCHHHHHHHHHhc
Confidence            434332889999999999999999999 99654 67889999999874 4699999997421  011122 3455654  


Q ss_pred             -----hhcCCCceeecCCC-CCcHHHHHHHHHhhc---------------------cCCceEEEEECCCCceecc
Q 046837          388 -----LQKRMPWYSIQDPA-MIQPAVIKYVKEEWK---------------------YSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       388 -----~~~~MPWyAVpf~~-~i~~~~~r~ike~f~---------------------~~~iP~LVvL~pqGkv~~~  435 (658)
                           +.-..|.++-.-.+ ....+..+++++...                     ++..|+-.++|++|+++..
T Consensus       118 ~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~~  192 (215)
T 2i3y_A          118 RPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMR  192 (215)
T ss_dssp             SSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEEE
T ss_pred             cchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEEE
Confidence                 22234444311100 001245667765421                     1223789999999999764

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.11  E-value=2.1e-05  Score=76.75  Aligned_cols=114  Identities=11%  Similarity=0.030  Sum_probs=73.8

Q ss_pred             CcEEecccccCcEEEEEEecCCCCChH-HHHHHHHHHHHhcCCCCeeEEEEecccC--CCcchh-hHHHHHHh-----hc
Q 046837          320 RTTVQIHVLKKKHVLLLISRPDDISQE-EILFLSNMYKDLKESKECRIVWLPIVDG--SIDRQQ-ALDKFKNL-----QK  390 (658)
Q Consensus       320 ~~kV~Is~L~gK~VlLyfSa~~~~~~~-~~~~L~~iY~~lk~~~~fEIVwIpivD~--s~~W~d-de~~F~~~-----~~  390 (658)
                      |+.|++++++||.|+|+|-+. ||+++ +++.|.++|++.+. .+++||-||..+-  ..+-+. .-.+|-++     ..
T Consensus        28 G~~v~Ls~~kGKvvll~F~At-~C~~c~e~p~L~~l~~~~~~-~g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~  105 (207)
T 2r37_A           28 EEYIPFKQYAGKYVLFVNVAS-YGGLTGQYIELNALQEELAP-FGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGF  105 (207)
T ss_dssp             SCEEEGGGGTTSEEEEEEECS-SSTTTTHHHHHHHHHHHHGG-GTEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTC
T ss_pred             CCEEcHHHhCCCEEEEEEeCC-CCCChHHHHHHHHHHHHhcc-CCEEEEEEECcccCcCCCCCHHHHHHHHHhcchhhcc
Confidence            889999999999999999999 99764 67789999999974 4699999996320  001112 33456542     22


Q ss_pred             C--CCceeecCCC-CCcHHHHHHHHHhhc---------------------cCCceEEEEECCCCceecc
Q 046837          391 R--MPWYSIQDPA-MIQPAVIKYVKEEWK---------------------YSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       391 ~--MPWyAVpf~~-~i~~~~~r~ike~f~---------------------~~~iP~LVvL~pqGkv~~~  435 (658)
                      .  .|.++-.-.+ ....+..+++++...                     ++..|+-+++|++|+++..
T Consensus       106 ~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~  174 (207)
T 2r37_A          106 VPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMR  174 (207)
T ss_dssp             CCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEE
T ss_pred             CccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCcEEEE
Confidence            3  3433211100 001235567765432                     1223789999999999754

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.08  E-value=1.3e-05  Score=77.08  Aligned_cols=150  Identities=16%  Similarity=0.084  Sum_probs=91.5

Q ss_pred             ccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCC-CCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCc
Q 046837          328 LKKKHVLLLISRPDDISQE--EILFLSNMYKDLKES-KECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQ  404 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~-~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~  404 (658)
                      .+||.|+++|.+. ||++|  +.+.|.+++++++.. .++.++-|-.       +++                       
T Consensus        30 ~~~~~v~v~F~a~-wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~-------~~~-----------------------   78 (241)
T 3idv_A           30 ADKDTVLLEFYAP-WCGHCKQFAPEYEKIANILKDKDPPIPVAKIDA-------TSA-----------------------   78 (241)
T ss_dssp             TTCSEEEEEEECT-TCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEET-------TTC-----------------------
T ss_pred             hcCCeEEEEEECC-CCHHHHHhhHHHHHHHHHHhhcCCceEEEEEec-------cCC-----------------------
Confidence            3589999999999 99765  567899999988642 3455555543       111                       


Q ss_pred             HHHHHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHHhhhcC---CCch--hhcccCCChhhh
Q 046837          405 PAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEK---PWTL--ELLVGDIDATIL  479 (658)
Q Consensus       405 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~e---~w~l--e~Lv~~id~~I~  479 (658)
                          +.+.+.|++++.|++++++ +|+.+...+            +.+.+.+.+.-++.   .|..  +.+..-.+..+.
T Consensus        79 ----~~l~~~~~v~~~Pt~~~~~-~g~~~~~~g------------~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~  141 (241)
T 3idv_A           79 ----SVLASRFDVSGYPTIKILK-KGQAVDYEG------------SRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFD  141 (241)
T ss_dssp             ----HHHHHHTTCCSSSEEEEEE-TTEEEECCS------------CSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHH
T ss_pred             ----HHHHHhcCCCcCCEEEEEc-CCCcccccC------------cccHHHHHHHHhhccCcccccccccceeccHHHHH
Confidence                1256679999999999996 576653221            22333332222111   1111  111111122333


Q ss_pred             hhhcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhc---CCceeEEEeecc
Q 046837          480 EWMKEERFICLYGGNDE-AWIRKFRNSAKDVASKA---QINWGMAYVGKK  525 (658)
Q Consensus       480 ~~i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~---~~~~E~v~Vgkd  525 (658)
                      ..+..++.++++|.+.+ ..|+.|.+.+.++++..   +..+.++.|..+
T Consensus       142 ~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~  191 (241)
T 3idv_A          142 EVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT  191 (241)
T ss_dssp             HHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETT
T ss_pred             HhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECC
Confidence            44668899999999932 34599999888887653   334777777655

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=98.05  E-value=3.6e-05  Score=75.46  Aligned_cols=166  Identities=12%  Similarity=0.113  Sum_probs=102.4

Q ss_pred             CCc--EEeccc-ccCcEEEEEEe-cCCCCChH---HHHHHHHHHHHhcCCCCe-eEEEEecccCCCcchhhHHHHHHhhc
Q 046837          319 TRT--TVQIHV-LKKKHVLLLIS-RPDDISQE---EILFLSNMYKDLKESKEC-RIVWLPIVDGSIDRQQALDKFKNLQK  390 (658)
Q Consensus       319 ~~~--kV~Is~-L~gK~VlLyfS-a~~~~~~~---~~~~L~~iY~~lk~~~~f-EIVwIpivD~s~~W~dde~~F~~~~~  390 (658)
                      +|+  .|.+++ ++||.|+|+|= +. |||+|   +++.|.+.|++++. .++ +||-|+.++     .+..++|-+-..
T Consensus        19 ~g~~~~v~l~~~~~gk~vvl~f~~a~-~cp~C~~~e~~~l~~~~~~~~~-~~~~~vv~is~d~-----~~~~~~~~~~~~   91 (241)
T 1nm3_A           19 GDKWVDVTTSELFDNKTVIVFSLPGA-FTPTCSSSHLPRYNELAPVFKK-YGVDDILVVSVND-----TFVMNAWKEDEK   91 (241)
T ss_dssp             TTEEEEEEHHHHHTTSEEEEEEESCS-SCHHHHHTHHHHHHHHHHHHHH-TTCCEEEEEESSC-----HHHHHHHHHHTT
T ss_pred             CCCceeecHHHHhCCCeEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEEcCC-----HHHHHHHHHhcC
Confidence            455  799999 99999988886 88 99764   57889999999863 578 999999732     125556655332


Q ss_pred             CCC-ceeecCCCCCcHHHHHHHHHhhccC-----------CceEEEEECCCCceeccchHHHHHHhCCccc--cCChhhH
Q 046837          391 RMP-WYSIQDPAMIQPAVIKYVKEEWKYS-----------KKAIIVSVDPQGRILNQNAFHTLWIWGISAF--PFTAETE  456 (658)
Q Consensus       391 ~MP-WyAVpf~~~i~~~~~r~ike~f~~~-----------~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AF--PFT~~r~  456 (658)
                       .+ |..+.-++   .+    +.+.|++.           ..|..+++ ++|++.....       |....  ||+....
T Consensus        92 -~~~~~~l~D~~---~~----~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~-------~~~~~~~~~~~~~~  155 (241)
T 1nm3_A           92 -SENISFIPDGN---GE----FTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFI-------EPNEPGDPFKVSDA  155 (241)
T ss_dssp             -CTTSEEEECTT---SH----HHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEE-------CCSCSSCCCSSSSH
T ss_pred             -CCceEEEECCC---cH----HHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEE-------eccCCCccceecCH
Confidence             22 33332222   23    34447764           35888999 9999975431       22221  4433333


Q ss_pred             HHhhhcCCCchhhcccCCChhhhhhhcCCcEEEEEccCCchHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837          457 EALWKEKPWTLELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKN  526 (658)
Q Consensus       457 eeL~~~e~w~le~Lv~~id~~I~~~i~egK~I~LYgg~d~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn  526 (658)
                      +++-+           .++...   + ....|-+|....-..|+    +++++-++.++++|.+-|..+.
T Consensus       156 ~~il~-----------~l~~~~---i-~~~~i~ly~~~~Cp~C~----~a~~~L~~~~i~~~~~~i~~~~  206 (241)
T 1nm3_A          156 DTMLK-----------YLAPQH---Q-VQESISIFTKPGCPFCA----KAKQLLHDKGLSFEEIILGHDA  206 (241)
T ss_dssp             HHHHH-----------HHCTTS---C-CCCCEEEEECSSCHHHH----HHHHHHHHHTCCCEEEETTTTC
T ss_pred             HHHHH-----------Hhhhhc---c-ccceEEEEECCCChHHH----HHHHHHHHcCCceEEEECCCch
Confidence            33322           111111   1 34568888776556664    3344434458999999888763

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=97.98  E-value=7.5e-06  Score=75.70  Aligned_cols=103  Identities=14%  Similarity=0.117  Sum_probs=72.6

Q ss_pred             CCCC--cEEeccc-ccCcEEEEEEe-cCCCCChH---HHHHHHHHHHHhcCCCCee-EEEEecccCCCcchhhHHHHHHh
Q 046837          317 GETR--TTVQIHV-LKKKHVLLLIS-RPDDISQE---EILFLSNMYKDLKESKECR-IVWLPIVDGSIDRQQALDKFKNL  388 (658)
Q Consensus       317 g~~~--~kV~Is~-L~gK~VlLyfS-a~~~~~~~---~~~~L~~iY~~lk~~~~fE-IVwIpivD~s~~W~dde~~F~~~  388 (658)
                      ..+|  +.|++++ ++||.|.|+|= +. ||++|   +++.|.+.|++++. .+++ ||-|+.++     .+..++|-+-
T Consensus        19 ~~~G~~~~~~l~~~~~gk~vvl~f~~~~-~c~~C~~~e~~~l~~~~~~~~~-~~v~~vv~Is~d~-----~~~~~~~~~~   91 (162)
T 1tp9_A           19 DEQDQLQEVSVHSLVAGKKVILFGVPGA-FTPTCSLKHVPGFIEKAGELKS-KGVTEILCISVND-----PFVMKAWAKS   91 (162)
T ss_dssp             CTTSCEEEEESHHHHTTSEEEEEEESCT-TCHHHHHTHHHHHHHHHHHHHH-TTCCCEEEEESSC-----HHHHHHHHHT
T ss_pred             cCCCCceeEeHHHHhCCCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCC-----HHHHHHHHHh
Confidence            4567  8899999 99999999887 78 99654   57789999999873 5788 99999732     1245556543


Q ss_pred             hcCC--CceeecCCCCCcHHHHHHHHHhhccC------C-----ceEEEEECCCCceecc
Q 046837          389 QKRM--PWYSIQDPAMIQPAVIKYVKEEWKYS------K-----KAIIVSVDPQGRILNQ  435 (658)
Q Consensus       389 ~~~M--PWyAVpf~~~i~~~~~r~ike~f~~~------~-----iP~LVvL~pqGkv~~~  435 (658)
                      + ..  ||..+--++       ..+.+.|++.      |     .|..+|+| +|++...
T Consensus        92 ~-~~~~~~~~l~D~~-------~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~  142 (162)
T 1tp9_A           92 Y-PENKHVKFLADGS-------ATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAA  142 (162)
T ss_dssp             C-TTCSSEEEEECTT-------SHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEE
T ss_pred             c-CCCCCeEEEECCC-------chHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEE
Confidence            3 23  443333221       2344557775      3     79999999 9999765

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=97.92  E-value=3.1e-05  Score=72.76  Aligned_cols=103  Identities=13%  Similarity=0.130  Sum_probs=72.2

Q ss_pred             CCCCcEEecccc-cCcEEEEEE-ecCCCCCh--H-HHHHHHHHHHHhcCCCCe-eEEEEecccCCCcchhhHHHHHHhhc
Q 046837          317 GETRTTVQIHVL-KKKHVLLLI-SRPDDISQ--E-EILFLSNMYKDLKESKEC-RIVWLPIVDGSIDRQQALDKFKNLQK  390 (658)
Q Consensus       317 g~~~~kV~Is~L-~gK~VlLyf-Sa~~~~~~--~-~~~~L~~iY~~lk~~~~f-EIVwIpivD~s~~W~dde~~F~~~~~  390 (658)
                      ..+|+.|.++++ +||.|.|+| -+. |||+  . +++.|.+.|++++. .++ +||-|+.++     .+..++|-+-. 
T Consensus        17 ~~~G~~v~L~d~~~Gk~vvl~f~~a~-wcp~C~~~e~p~l~~~~~~~~~-~gv~~vv~Is~d~-----~~~~~~~~~~~-   88 (167)
T 2wfc_A           17 ATPNDKVNMAELFAGKKGVLFAVPGA-FTPGSSKTHLPGYVEQAAAIHG-KGVDIIACMAVND-----SFVMDAWGKAH-   88 (167)
T ss_dssp             SSTTCEEEHHHHTTTSEEEEEEESCT-TCHHHHHTHHHHHHHTHHHHHH-TTCCEEEEEESSC-----HHHHHHHHHHT-
T ss_pred             CCCCcEEeHHHHhCCCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEeCCC-----HHHHHHHHHhc-
Confidence            456789999998 999887776 588 9965  4 67789999999863 569 999999732     12455665432 


Q ss_pred             CCC--ceeecCCCCCcHHHHHHHHHhhccCC-----------ceEEEEECCCCceecc
Q 046837          391 RMP--WYSIQDPAMIQPAVIKYVKEEWKYSK-----------KAIIVSVDPQGRILNQ  435 (658)
Q Consensus       391 ~MP--WyAVpf~~~i~~~~~r~ike~f~~~~-----------iP~LVvL~pqGkv~~~  435 (658)
                      .+|  |..+.-++   .+    +.+.|++..           .|..+++ ++|+++..
T Consensus        89 ~~~~~fp~l~D~~---~~----~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~  138 (167)
T 2wfc_A           89 GADDKVQMLADPG---GA----FTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKV  138 (167)
T ss_dssp             TCTTTSEEEECTT---SH----HHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEE
T ss_pred             CCCcceEEEECCC---Cc----HHHHcCCccccccccCcccceEEEEEE-eCCEEEEE
Confidence            345  44333322   23    344477754           3999999 99999865

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=97.89  E-value=2.4e-05  Score=78.07  Aligned_cols=103  Identities=12%  Similarity=0.139  Sum_probs=71.3

Q ss_pred             CCCcEEecccccCc-EEEEEE-ecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHh-----
Q 046837          318 ETRTTVQIHVLKKK-HVLLLI-SRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNL-----  388 (658)
Q Consensus       318 ~~~~kV~Is~L~gK-~VlLyf-Sa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~-----  388 (658)
                      .+| .|.+++++|| .|.|+| .+. |||.  .+++.|.+.|++++. .+++||.||+++     .+....|-+-     
T Consensus        17 ~~G-~v~l~d~~Gk~~vvL~f~pa~-~cpvC~~el~~l~~l~~ef~~-~~v~vigIS~D~-----~~~~~~~~~~i~~~~   88 (233)
T 2v2g_A           17 TIG-KLKFHDWLGNSWGVLFSHPRD-FTPVSTTELGRVIQLEGDFKK-RGVKLIALSCDN-----VADHKEWSEDVKCLS   88 (233)
T ss_dssp             TTC-CEEHHHHHCSSEEEEEECSCS-SCHHHHHHHHHHHHTHHHHHH-TTEEEEEEESSC-----HHHHHHHHHHHHHHH
T ss_pred             CCC-CEEHHHHCCCCeEEEEEECCC-CCCCcHHHHHHHHHHHHHHHH-cCCEEEEEcCCC-----HHHHHHHHHHHHHhh
Confidence            356 7999999998 777777 588 9965  567789999999863 579999999732     1234445442     


Q ss_pred             hc--CCCceeecCCCCCcHHHHHHHHHhhccC------------CceEEEEECCCCceecc
Q 046837          389 QK--RMPWYSIQDPAMIQPAVIKYVKEEWKYS------------KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       389 ~~--~MPWyAVpf~~~i~~~~~r~ike~f~~~------------~iP~LVvL~pqGkv~~~  435 (658)
                      ..  .++|.-+--++   .+    +.+.|++.            ..|..+|+||+|++...
T Consensus        89 ~~~~~~~fpil~D~~---~~----va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~  142 (233)
T 2v2g_A           89 GVKGDMPYPIIADET---RE----LAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLS  142 (233)
T ss_dssp             TCCSSCSSCEEECTT---CH----HHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEE
T ss_pred             CcccCCceEEEECCh---HH----HHHHhCCcCcccccCCCcccccceEEEECCCCEEEEE
Confidence            12  56665443322   22    44457764            47999999999999754

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=97.89  E-value=5.8e-05  Score=74.45  Aligned_cols=103  Identities=10%  Similarity=0.169  Sum_probs=71.0

Q ss_pred             CCCcEEecccccCc--EEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHH----hh
Q 046837          318 ETRTTVQIHVLKKK--HVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKN----LQ  389 (658)
Q Consensus       318 ~~~~kV~Is~L~gK--~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~----~~  389 (658)
                      .+| .|++++++||  .|+++|-+. |||.  .+++.|.+.|++++. .+++||.||+++     .+....|.+    ..
T Consensus        19 ~~G-~v~l~d~~Gk~~vvL~~~~a~-~cp~C~~el~~l~~l~~~f~~-~~v~vi~IS~D~-----~~~~~~~~~~i~~~~   90 (224)
T 1prx_A           19 TVG-RIRFHDFLGDSWGILFSHPRD-FTPVCTTELGRAAKLAPEFAK-RNVKLIALSIDS-----VEDHLAWSKDINAYN   90 (224)
T ss_dssp             TTE-EEEHHHHHTTSEEEEEEESCS-SCHHHHHHHHHHHHHHHHHHT-TTEEEEEEESSC-----HHHHHHHHHHHHHHT
T ss_pred             CCC-CEEHHHHcCCCeEEEEEECCC-CCCCcHHHHHHHHHHHHHHHH-CCCEEEEEcCCC-----HHHHHHHHHHHHHhh
Confidence            356 7999999998  466666898 9965  567789999999863 579999999732     123344433    21


Q ss_pred             -----cCCCceeecCCCCCcHHHHHHHHHhhccC------------CceEEEEECCCCceecc
Q 046837          390 -----KRMPWYSIQDPAMIQPAVIKYVKEEWKYS------------KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       390 -----~~MPWyAVpf~~~i~~~~~r~ike~f~~~------------~iP~LVvL~pqGkv~~~  435 (658)
                           ..++|..+--++   .+    +.+.|++.            ..|..+++||+|++...
T Consensus        91 ~~~~~~~~~fpil~D~~---~~----va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~  146 (224)
T 1prx_A           91 SEEPTEKLPFPIIDDRN---RE----LAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLS  146 (224)
T ss_dssp             TSCCCSCCSSCEEECTT---CH----HHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEE
T ss_pred             CcccccCcCcceeecCc---hH----HHHHhCCCCcccccCCCccccceEEEEECCCCEEEEE
Confidence                 356665443322   22    44457763            37999999999998754

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=97.87  E-value=1.3e-05  Score=81.29  Aligned_cols=100  Identities=19%  Similarity=0.228  Sum_probs=70.7

Q ss_pred             EEec-ccc--cCcE-EEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh-----c
Q 046837          322 TVQI-HVL--KKKH-VLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ-----K  390 (658)
Q Consensus       322 kV~I-s~L--~gK~-VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~-----~  390 (658)
                      +|++ +++  +||. |+++|-+. ||+.  .+++.|.+.|++++. .+++||.||+++     .+....|.+..     .
T Consensus        22 ~v~l~~d~l~~GK~vVL~~fpa~-~CpvC~tEl~~l~~l~~ef~~-~gv~VI~VS~Ds-----~~~~~~w~~~~~~~~~~   94 (249)
T 3a2v_A           22 VIKLPDHYVSQGKWFVLFSHPAD-FTPVCTTEFVSFARRYEDFQR-LGVDLIGLSVDS-----VFSHIKWKEWIERHIGV   94 (249)
T ss_dssp             EEEETHHHHTTTCEEEEECCSCT-TCHHHHHHHHHHHHTHHHHHH-TTEEEEEEESSC-----HHHHHHHHHHHHHHTCC
T ss_pred             CEecHHHHhhCCCEEEEEEEcCC-CCcChHHHHHHHHHHHHHHHh-CCcEEEEEECCC-----HHHHHHHHHHHHHhcCC
Confidence            6999 998  9996 55678999 9965  567789999999863 479999999832     11344444321     2


Q ss_pred             CCCceeecCCCCCcHHHHHHHHHhhccC-------CceEEEEECCCCceecc
Q 046837          391 RMPWYSIQDPAMIQPAVIKYVKEEWKYS-------KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       391 ~MPWyAVpf~~~i~~~~~r~ike~f~~~-------~iP~LVvL~pqGkv~~~  435 (658)
                      .++|..+--++       +.+.+.|++.       ..|.++++||+|++...
T Consensus        95 ~i~fPil~D~~-------~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~  139 (249)
T 3a2v_A           95 RIPFPIIADPQ-------GTVARRLGLLHAESATHTVRGVFIVDARGVIRTM  139 (249)
T ss_dssp             CCCSCEEECTT-------SHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEE
T ss_pred             CCceeEEECCc-------hHHHHHhCCccccCCCcccceEEEECCCCeEEEE
Confidence            55554443322       2345568887       89999999999998754

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=97.86  E-value=8.4e-06  Score=76.19  Aligned_cols=104  Identities=14%  Similarity=0.234  Sum_probs=73.3

Q ss_pred             CCCCcEEecccc--cCcEEEEEEe-cCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcC
Q 046837          317 GETRTTVQIHVL--KKKHVLLLIS-RPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKR  391 (658)
Q Consensus       317 g~~~~kV~Is~L--~gK~VlLyfS-a~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~  391 (658)
                      ..+|+.|+++++  +||.|.|+|= +. |||+|  +++.|.+.|++++ +.++++|-||.++     .+..++|.+- ..
T Consensus        18 ~~~G~~v~Lsd~~~~Gk~vvl~f~~~~-~cp~C~~e~~~l~~~~~~~~-~~~v~vv~is~d~-----~~~~~~~~~~-~~   89 (164)
T 4gqc_A           18 NQDFEPVNLYEVLKRGRPAVLIFFPAA-FSPVCTKELCTFRDKMAQLE-KANAEVLAISVDS-----PWCLKKFKDE-NR   89 (164)
T ss_dssp             BTTSCEEEHHHHHHTSSCEEEEECSCT-TCCEECSSCEESCCCGGGGG-GSSSEEEEEESSC-----HHHHHHHHHH-TT
T ss_pred             CCCCCEEEHHHHhcCCCEEEEEEeCCC-CCCCcccchhhhhhhHHHhh-ccCceEEEecCCC-----HHHHHHHHHh-cC
Confidence            457889999998  8998888876 88 99765  5677999999886 4578999999732     1255667653 35


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhccC----------CceEEEEECCCCceecc
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKYS----------KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~~----------~iP~LVvL~pqGkv~~~  435 (658)
                      +||..+--++   .+    +.+.|++.          ..|...|+|++|++...
T Consensus        90 ~~fp~l~D~~---~~----v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~  136 (164)
T 4gqc_A           90 LAFNLLSDYN---RE----VIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYK  136 (164)
T ss_dssp             CCSEEEECTT---SH----HHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEE
T ss_pred             cccceeecCc---hH----HHHHcCCcccccccCcCCeeeEEEEECCCCEEEEE
Confidence            5655443332   23    34457763          25788999999999753

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=97.85  E-value=3.9e-05  Score=75.45  Aligned_cols=102  Identities=12%  Similarity=0.172  Sum_probs=70.0

Q ss_pred             CCcEEecccccCc-E-EEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHH----h--
Q 046837          319 TRTTVQIHVLKKK-H-VLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKN----L--  388 (658)
Q Consensus       319 ~~~kV~Is~L~gK-~-VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~----~--  388 (658)
                      +| .|++++++|| . |+++|-+. |||.  .+++.|.+.|++++. .+++||.||+++     .+....|.+    +  
T Consensus        20 ~G-~v~l~d~~Gk~~vvL~f~~a~-~cp~C~~el~~l~~l~~~f~~-~~v~vi~vS~D~-----~~~~~~~~~~i~~~~~   91 (220)
T 1xcc_A           20 DG-DFELYKYIENSWAILFSHPND-FTPVCTTELAELGKMHEDFLK-LNCKLIGFSCNS-----KESHDKWIEDIKYYGK   91 (220)
T ss_dssp             SS-CEEHHHHTTTSEEEEECCSCT-TCHHHHHHHHHHHHTHHHHHT-TTEEEEEEESSC-----HHHHHHHHHHHHHHHT
T ss_pred             CC-cEeHHHHcCCCeEEEEEECCC-CCCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCC-----HHHHHHHHHHHHHHhc
Confidence            56 7999999998 4 44455788 9965  567789999999973 579999999732     124444543    1  


Q ss_pred             hcCCCceeecCCCCCcHHHHHHHHHhhccC------------CceEEEEECCCCceecc
Q 046837          389 QKRMPWYSIQDPAMIQPAVIKYVKEEWKYS------------KKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       389 ~~~MPWyAVpf~~~i~~~~~r~ike~f~~~------------~iP~LVvL~pqGkv~~~  435 (658)
                      ...++|..+--++   .    .+.+.|++.            ..|..+|+||+|++...
T Consensus        92 ~~~~~fpil~D~~---~----~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~  143 (220)
T 1xcc_A           92 LNKWEIPIVCDES---R----ELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKAT  143 (220)
T ss_dssp             CSCCCCCEEECTT---S----HHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEE
T ss_pred             CCCCcceeEECch---h----HHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEE
Confidence            2456655443322   2    244557763            37999999999998754

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=97.83  E-value=4.9e-05  Score=67.40  Aligned_cols=83  Identities=10%  Similarity=0.019  Sum_probs=63.6

Q ss_pred             ccCCCCcEEecccccCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837          315 VDGETRTTVQIHVLKKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM  392 (658)
Q Consensus       315 ~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M  392 (658)
                      +...++..+.++.++||.|+++|.+. ||++|.  .+.|.+++++++  +++.++.|.+.       ++.          
T Consensus        36 l~~~~~~~~~l~~~~~k~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~-------~~~----------   95 (141)
T 3hxs_A           36 IADYENHSKEWKYLGDKPAIVDFYAD-WCGPCKMVAPILEELSKEYA--GKIYIYKVNVD-------KEP----------   95 (141)
T ss_dssp             TCCCSSCCCCCCCCCSSCEEEEEECT-TCTTHHHHHHHHHHHHHHTT--TTCEEEEEETT-------TCH----------
T ss_pred             hhccccchhHHHHhCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHhc--CceEEEEEECC-------CCH----------
Confidence            34456677889999999999999999 998754  567888888875  35666666651       111          


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                                       .+.+.|++++.|++++++++|+++.
T Consensus        96 -----------------~~~~~~~v~~~Pt~~~~~~~g~~~~  120 (141)
T 3hxs_A           96 -----------------ELARDFGIQSIPTIWFVPMKGEPQV  120 (141)
T ss_dssp             -----------------HHHHHTTCCSSSEEEEECSSSCCEE
T ss_pred             -----------------HHHHHcCCCCcCEEEEEeCCCCEEE
Confidence                             2456689999999999999999764

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=97.72  E-value=7.7e-05  Score=65.04  Aligned_cols=74  Identities=9%  Similarity=0.051  Sum_probs=56.8

Q ss_pred             ccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837          326 HVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI  403 (658)
Q Consensus       326 s~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i  403 (658)
                      ...+||.|+++|.+. ||++|  +.+.|.+++++++  .++.++.|.+.      .|+                      
T Consensus        22 ~~~~~k~~lv~f~a~-wC~~C~~~~~~l~~~~~~~~--~~v~~~~v~~~------~d~----------------------   70 (126)
T 2l57_A           22 EAKEGIPTIIMFKTD-TCPYCVEMQKELSYVSKERE--GKFNIYYARLE------EEK----------------------   70 (126)
T ss_dssp             TCCSSSCEEEEEECS-SCHHHHHHHHHHHHHHHHSS--SSCEEEEEETT------SSH----------------------
T ss_pred             HHhCCCcEEEEEECC-CCccHHHHHHHHHHHHHHhc--CCeEEEEEeCC------CCc----------------------
Confidence            345789999999999 99775  4567889988876  67888888830      010                      


Q ss_pred             cHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          404 QPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       404 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                          -..+.+.|++++.|++++++++|+++.
T Consensus        71 ----~~~~~~~~~v~~~Pt~~~~~~~G~~~~   97 (126)
T 2l57_A           71 ----NIDLAYKYDANIVPTTVFLDKEGNKFY   97 (126)
T ss_dssp             ----HHHHHHHTTCCSSSEEEEECTTCCEEE
T ss_pred             ----hHHHHHHcCCcceeEEEEECCCCCEEE
Confidence                123556799999999999999999864

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=97.69  E-value=1.3e-05  Score=74.04  Aligned_cols=95  Identities=12%  Similarity=0.098  Sum_probs=58.1

Q ss_pred             cccCcEEEEEEecCCCCChHHH--------HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeec
Q 046837          327 VLKKKHVLLLISRPDDISQEEI--------LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQ  398 (658)
Q Consensus       327 ~L~gK~VlLyfSa~~~~~~~~~--------~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVp  398 (658)
                      ..+||.|+|.|.|. ||++|..        +.+.+.|++     +|.+|-|.+.+..     +......+.....+..++
T Consensus        44 ~~~gk~vlv~F~A~-WC~~C~~~~~~~~~~~~~~~~~~~-----~~~~v~v~~d~~~-----~~~~~~~~~~~~~~~~~~  112 (172)
T 3f9u_A           44 RQHNKPVMLDFTGY-GCVNCRKMELAVWTDPKVSSIINN-----DYVLITLYVDNKT-----PLTEPVKIMENGTERTLR  112 (172)
T ss_dssp             HHTTCCEEEEEECT-TCHHHHHHHHHTTTSHHHHHHHHH-----HCEEEEEETTCCC-----EEEEEEEEEETTEEEEEE
T ss_pred             HHcCCeEEEEEECC-CCHHHHHHHHHhcCCHHHHHHhcC-----CEEEEEEecCccc-----ccchhhhhhhcchhhhhh
Confidence            35699999999999 9988753        334444443     5888888763210     000001112233344433


Q ss_pred             CCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          399 DPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       399 f~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      ...   ........+.|++.++|+++++|++|+++..
T Consensus       113 ~~~---~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~  146 (172)
T 3f9u_A          113 TVG---DKWSYLQRVKFGANAQPFYVLIDNEGNPLNK  146 (172)
T ss_dssp             EHH---HHHHHHHHHHHSCCCSSEEEEECTTSCBSSC
T ss_pred             hhh---hhhhHHHHHHcCCCCcceEEEECCCCCEEee
Confidence            311   1222233578999999999999999999764

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=97.61  E-value=2.2e-05  Score=72.07  Aligned_cols=90  Identities=13%  Similarity=0.064  Sum_probs=59.5

Q ss_pred             CcEEecccccCcEEEEEEe-cCCCCChHH--HHHH---HHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837          320 RTTVQIHVLKKKHVLLLIS-RPDDISQEE--ILFL---SNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP  393 (658)
Q Consensus       320 ~~kV~Is~L~gK~VlLyfS-a~~~~~~~~--~~~L---~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP  393 (658)
                      +..+..+..+||.|+|+|. +. ||++|.  .+.|   .++.+...  .+|.+|-|...       ++.        .+|
T Consensus        37 ~~~~~~a~~~gk~vlv~F~ga~-wC~~C~~~~p~l~~~~~~~~~~~--~~~~~v~vd~~-------~~~--------~~~   98 (154)
T 2ju5_A           37 AEALEHSKQDHKPIGLFFTGSD-WCMWCIKMQDQILQSSEFKHFAG--VHLHMVEVDFP-------QKN--------HQP   98 (154)
T ss_dssp             HHHHHHHHHHCCCEEEEEECTT-TCHHHHHHHHHTTTSHHHHHHHH--HHCEEEEEECC-------SSC--------CCC
T ss_pred             HHHHHHHHhCCCeEEEEEeCCC-CCHhHHHHHHHHhcCHHHHHHhc--CcEEEEEecCc-------ccc--------CCC
Confidence            3445566688999999999 89 998764  5556   45443332  34555555441       211        223


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                           ++.   ......+.+.|++.++|+++++|++|+++..
T Consensus        99 -----~~~---~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~  132 (154)
T 2ju5_A           99 -----EEQ---RQKNQELKAQYKVTGFPELVFIDAEGKQLAR  132 (154)
T ss_dssp             -----HHH---HHHHHHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred             -----hhh---HhhHHHHHHHcCCCCCCEEEEEcCCCCEEEE
Confidence                 211   1334567788999999999999999999764

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=97.54  E-value=0.00014  Score=69.10  Aligned_cols=76  Identities=9%  Similarity=0.108  Sum_probs=55.0

Q ss_pred             ecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCC
Q 046837          324 QIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPA  401 (658)
Q Consensus       324 ~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~  401 (658)
                      .++.++||.|+|.|+|. |||+|  +.|.|.+++++.   .+++++.|.+       +++++..+.+..           
T Consensus        48 ~l~~~~~k~vvv~F~A~-WC~pC~~~~P~l~~l~~~~---~~v~~~~v~~-------d~~~~~~~~~~~-----------  105 (167)
T 1z6n_A           48 RLQRIERRYRLLVAGEM-WCPDCQINLAALDFAQRLQ---PNIELAIISK-------GRAEDDLRQRLA-----------  105 (167)
T ss_dssp             HHHTCCSCEEEEEECCT-TCHHHHHHHHHHHHHHHHC---TTEEEEEECH-------HHHHHHTTTTTT-----------
T ss_pred             HHHHhCCCEEEEEEECC-CChhHHHHHHHHHHHHHHC---CCcEEEEEEC-------CCCHHHHHHHHH-----------
Confidence            35668899999999999 99876  578899999764   3688888775       122221111111           


Q ss_pred             CCcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          402 MIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       402 ~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                                   -+++++|++++++++|+++.
T Consensus       106 -------------~~v~~iPt~i~~~~~G~~~~  125 (167)
T 1z6n_A          106 -------------LERIAIPLVLVLDEEFNLLG  125 (167)
T ss_dssp             -------------CSSCCSSEEEEECTTCCEEE
T ss_pred             -------------cCCCCcCeEEEECCCCCEEE
Confidence                         14799999999999999864

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=97.53  E-value=0.00018  Score=64.06  Aligned_cols=78  Identities=14%  Similarity=0.014  Sum_probs=57.1

Q ss_pred             EEecccccCcEEEEEEecCCCCChHHH--HHH---HHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCcee
Q 046837          322 TVQIHVLKKKHVLLLISRPDDISQEEI--LFL---SNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYS  396 (658)
Q Consensus       322 kV~Is~L~gK~VlLyfSa~~~~~~~~~--~~L---~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyA  396 (658)
                      +..++..+||.|+|+|.+. ||++|..  +.+   .+++++++   ++.++.|.+.       +..              
T Consensus        23 ~~~l~~~~~k~vlv~F~a~-wC~~C~~~~~~~~~~~~l~~~~~---~~~~~~vd~~-------~~~--------------   77 (134)
T 2fwh_A           23 NQALVEAKGKPVMLDLYAD-WCVACKEFEKYTFSDPQVQKALA---DTVLLQANVT-------AND--------------   77 (134)
T ss_dssp             HHHHHHHTTSCEEEEEECT-TCHHHHHHHHHTTTSHHHHHHTT---TSEEEEEECT-------TCC--------------
T ss_pred             HHHHHHhcCCcEEEEEECC-CCHHHHHHHHHhcCCHHHHHHhc---CcEEEEEeCC-------CCc--------------
Confidence            4456667799999999999 9988654  345   66766664   4777777652       110              


Q ss_pred             ecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          397 IQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       397 Vpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                               .....+.+.|++.+.|+++++|++|+++
T Consensus        78 ---------~~~~~l~~~~~v~~~Pt~~~~d~~G~~v  105 (134)
T 2fwh_A           78 ---------AQDVALLKHLNVLGLPTILFFDGQGQEH  105 (134)
T ss_dssp             ---------HHHHHHHHHTTCCSSSEEEEECTTSCBC
T ss_pred             ---------chHHHHHHHcCCCCCCEEEEECCCCCEe
Confidence                     1234466779999999999999999996

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=97.49  E-value=0.00029  Score=61.90  Aligned_cols=80  Identities=8%  Similarity=0.039  Sum_probs=59.4

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW  394 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW  394 (658)
                      ..++..+.....+||.|+++|.+. ||++|  +.+.|.+++++.+  +++.++.|.+.       +..            
T Consensus        29 ~~~~~~~~~~~~~~k~vlv~F~a~-wC~~C~~~~p~l~~~~~~~~--~~v~~~~vd~d-------~~~------------   86 (128)
T 3ul3_B           29 QNGSNIINGVNMKNTVIVLYFFAK-WCQACTMQSTEMDKLQKYYG--KRIYLLKVDLD-------KNE------------   86 (128)
T ss_dssp             CCCCSSSSBTTSCCSEEEEEEECT-TCHHHHHHHHHHHHHHHHHG--GGEEEEEEEGG-------GCH------------
T ss_pred             cCCccHHHHHHccCCEEEEEEECC-CCHHHHHHhHHHHHHHHHhc--CCeEEEEEECC-------CCH------------
Confidence            334444566667899999999999 99765  4567999888876  45777776651       121            


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                                     .+.+.|++++.|+++++ ++|+++.
T Consensus        87 ---------------~l~~~~~v~~~Pt~~~~-~~G~~~~  110 (128)
T 3ul3_B           87 ---------------SLARKFSVKSLPTIILL-KNKTMLA  110 (128)
T ss_dssp             ---------------HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---------------HHHHHcCCCCcCEEEEE-ECCEEEE
Confidence                           35567999999999999 7898764

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=97.44  E-value=0.00018  Score=63.31  Aligned_cols=74  Identities=12%  Similarity=0.051  Sum_probs=54.9

Q ss_pred             ccCcEEEEEEecCCCCChHH--HHHHH--HHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837          328 LKKKHVLLLISRPDDISQEE--ILFLS--NMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI  403 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~~--~~~L~--~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i  403 (658)
                      .+||.|+|+|.+. ||++|.  .+.|.  ++.++++  +++.++.|.+.       +                  ...  
T Consensus        27 ~~~k~vlv~f~a~-wC~~C~~~~~~l~~~~~~~~~~--~~~~~~~vd~~-------~------------------~~~--   76 (133)
T 3fk8_A           27 RTHKPTLLVFGAN-WCTDCRALDKSLRNQKNTALIA--KHFEVVKIDVG-------N------------------FDR--   76 (133)
T ss_dssp             HHTCCEEEEEECT-TCHHHHHHHHHHTSHHHHHHHH--HHCEEEEEECT-------T------------------TTS--
T ss_pred             hcCCcEEEEEcCC-CCHHHHHHHHHhCCHHHHHHhc--CCEEEEEEeCC-------c------------------ccc--
Confidence            3589999999999 998764  55677  7777764  45888887761       1                  111  


Q ss_pred             cHHHHHHHHHhhcc---CCceEEEEECCCCceecc
Q 046837          404 QPAVIKYVKEEWKY---SKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       404 ~~~~~r~ike~f~~---~~iP~LVvL~pqGkv~~~  435 (658)
                          ...+.+.|++   .++|+++++|++|+++..
T Consensus        77 ----~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~  107 (133)
T 3fk8_A           77 ----NLELSQAYGDPIQDGIPAVVVVNSDGKVRYT  107 (133)
T ss_dssp             ----SHHHHHHTTCGGGGCSSEEEEECTTSCEEEE
T ss_pred             ----hHHHHHHhCCccCCccceEEEECCCCCEEEE
Confidence                1235567999   999999999999998754

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=97.42  E-value=0.00033  Score=66.55  Aligned_cols=104  Identities=20%  Similarity=0.180  Sum_probs=69.6

Q ss_pred             CCCCcEEeccc-ccCcEEEEEE-ecCCCCChH---HHHHHHHHHHHhcCCCCeeEEE-EecccCCCcchhhHHHHHHhhc
Q 046837          317 GETRTTVQIHV-LKKKHVLLLI-SRPDDISQE---EILFLSNMYKDLKESKECRIVW-LPIVDGSIDRQQALDKFKNLQK  390 (658)
Q Consensus       317 g~~~~kV~Is~-L~gK~VlLyf-Sa~~~~~~~---~~~~L~~iY~~lk~~~~fEIVw-IpivD~s~~W~dde~~F~~~~~  390 (658)
                      ..+|+.|.+++ ++||.|.|+| =+. |||+|   +++.|.+.|++++. .+++||. ||.++     -+..++|-+-..
T Consensus        29 ~~~g~~v~L~d~~~gk~vvL~f~pa~-wcp~C~~~e~p~l~~~~~~~~~-~gv~vv~~iS~D~-----~~~~~~f~~~~~  101 (173)
T 3mng_A           29 GEPGNKVNLAELFKGKKGVLFGVPGA-FTPGCSKTHLPGFVEQAEALKA-KGVQVVACLSVND-----AFVTGEWGRAHK  101 (173)
T ss_dssp             SSTTCEEEHHHHTTTSEEEEEECSCT-TCHHHHHTHHHHHHHTHHHHHT-TTCCEEEEEESSC-----HHHHHHHHHHTT
T ss_pred             CCCCCEEEhHHHhCCCcEEEEEEeCC-CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEEcCCC-----HHHHHHHHHHhC
Confidence            56788899999 5999766555 588 99765   46789999999973 5799998 99732     125556754332


Q ss_pred             CCC--ceeecCCCCCcHHHHHHHHHhhccC-------------CceEEEEECCCCceeccc
Q 046837          391 RMP--WYSIQDPAMIQPAVIKYVKEEWKYS-------------KKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       391 ~MP--WyAVpf~~~i~~~~~r~ike~f~~~-------------~iP~LVvL~pqGkv~~~n  436 (658)
                       .|  +..+--++   .+.    .+.|++.             ..|...|+| +|++....
T Consensus       102 -~~~~fp~l~D~~---~~v----a~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~  153 (173)
T 3mng_A          102 -AEGKVRLLADPT---GAF----GKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALN  153 (173)
T ss_dssp             -CTTTCEEEECTT---CHH----HHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred             -CCCceEEEECCC---hHH----HHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEE
Confidence             22  33332222   233    3346654             459999999 99997543

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=97.39  E-value=0.00067  Score=65.09  Aligned_cols=118  Identities=14%  Similarity=0.061  Sum_probs=75.1

Q ss_pred             CC-cEEeccc-ccCcEE-EEEEecCCCCChH---HHHHHHHHHHHhcCCCCee-EEEEecccCCCcchhhHHHHHHhhcC
Q 046837          319 TR-TTVQIHV-LKKKHV-LLLISRPDDISQE---EILFLSNMYKDLKESKECR-IVWLPIVDGSIDRQQALDKFKNLQKR  391 (658)
Q Consensus       319 ~~-~kV~Is~-L~gK~V-lLyfSa~~~~~~~---~~~~L~~iY~~lk~~~~fE-IVwIpivD~s~~W~dde~~F~~~~~~  391 (658)
                      +| +.|++++ ++||.| +++|=+. |||+|   |++.|.+.|++++. .+++ ||-|+..+     .+..++|-+-. .
T Consensus        43 ~G~~~v~L~d~~~Gk~vvL~f~~a~-wcp~C~~~e~p~l~~~~~~~~~-~gv~~vv~Is~d~-----~~~~~~f~~~~-~  114 (184)
T 3uma_A           43 DGPVEVTTELLFKGKRVVLFAVPGA-FTPTCSLNHLPGYLENRDAILA-RGVDDIAVVAVND-----LHVMGAWATHS-G  114 (184)
T ss_dssp             TEEEEEEHHHHHTTSEEEEEEESCT-TCHHHHHTHHHHHHHTHHHHHT-TTCCEEEEEESSC-----HHHHHHHHHHH-T
T ss_pred             CCceEEeHHHHhCCCCEEEEEEcCC-CCCCcCHHHHHHHHHHHHHHHH-cCCCEEEEEECCC-----HHHHHHHHHHh-C
Confidence            56 7899999 899965 5556688 99765   57789999999974 4588 99999732     12555665433 3


Q ss_pred             CC--ceeecCCCCCcHHHHHHHHHhhccC-----------CceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHH
Q 046837          392 MP--WYSIQDPAMIQPAVIKYVKEEWKYS-----------KKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEA  458 (658)
Q Consensus       392 MP--WyAVpf~~~i~~~~~r~ike~f~~~-----------~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~ee  458 (658)
                      .|  |.-+.-++   .    .+.+.|++.           ..|..+|++ +|+|.....       |.+.=+++.+..++
T Consensus       115 ~~~~fp~l~D~~---~----~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~-------~~~~g~~~~~~~~~  179 (184)
T 3uma_A          115 GMGKIHFLSDWN---A----AFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNI-------EESPGQATASGAAA  179 (184)
T ss_dssp             CTTTSEEEECTT---C----HHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEE-------CSSTTCCSTTSHHH
T ss_pred             CCCceEEEEcCc---h----HHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEE-------eCCCCCCcCCCHHH
Confidence            34  43333332   2    334447775           246677776 999975442       33333555555544


Q ss_pred             h
Q 046837          459 L  459 (658)
Q Consensus       459 L  459 (658)
                      +
T Consensus       180 v  180 (184)
T 3uma_A          180 M  180 (184)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=97.27  E-value=0.00086  Score=67.16  Aligned_cols=102  Identities=5%  Similarity=0.069  Sum_probs=64.7

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChHH-------HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQEE-------ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ  389 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~~-------~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~  389 (658)
                      ..+|+.|++++++||.|.|+|=..||||.|-       ++.|.+.|      .+++||-||.++     -+..++|-+-.
T Consensus        35 d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~~------~gv~VvgIS~Ds-----~~~~~~f~~~~  103 (224)
T 3keb_A           35 DDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDSW------PHLKLIVITVDS-----PSSLARARHEH  103 (224)
T ss_dssp             ETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTTC------TTSEEEEEESSC-----HHHHHHHHHHH
T ss_pred             CCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHHc------CCCEEEEEECCC-----HHHHHHHHHHc
Confidence            3467789999999999999998883476554       44444442      568999999732     12556675544


Q ss_pred             cCCCceeecCCCCCcHHHHHHHHHhhccCC---------ceEEEEECCCCceecc
Q 046837          390 KRMPWYSIQDPAMIQPAVIKYVKEEWKYSK---------KAIIVSVDPQGRILNQ  435 (658)
Q Consensus       390 ~~MPWyAVpf~~~i~~~~~r~ike~f~~~~---------iP~LVvL~pqGkv~~~  435 (658)
                      .--++.-+--+.  +.+    +.+.|++..         .|...|||++|++...
T Consensus       104 gl~~fplLsD~~--~~~----vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~  152 (224)
T 3keb_A          104 GLPNIALLSTLR--GRD----FHKRYGVLITEYPLSGYTSPAIILADAANVVHYS  152 (224)
T ss_dssp             CCTTCEEEESTT--CTT----HHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEE
T ss_pred             CCCCceEEEcCC--chH----HHHHhCCccccccccCCccCEEEEEcCCCEEEEE
Confidence            311222222110  112    334477753         7999999999999754

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.0013  Score=65.58  Aligned_cols=109  Identities=17%  Similarity=0.182  Sum_probs=71.7

Q ss_pred             CCCCcEEecccccCcEEEEEEe-cCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh-cCC
Q 046837          317 GETRTTVQIHVLKKKHVLLLIS-RPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ-KRM  392 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfS-a~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~-~~M  392 (658)
                      +.++.+|++++++||.|.|||= +. |||.  .|+..+.+.|++++ +.+.+||-||.++     -.....|.+-. ...
T Consensus        39 d~~~~~vsLsd~~GK~vVL~FyP~d-~TpvCt~E~~~f~~~~~~f~-~~g~~vigiS~Ds-----~~sh~aw~~~~~~~~  111 (216)
T 3sbc_A           39 DGVFDEVSLDKYKGKYVVLAFIPLA-FTFVSPTEIIAFSEAAKKFE-EQGAQVLFASTDS-----EYSLLAWTNIPRKEG  111 (216)
T ss_dssp             TTEEEEECGGGGTTSEEEEEECSCT-TSSHHHHHHHHHHHHHHHHH-HTTEEEEEEESSC-----HHHHHHHHTSCGGGT
T ss_pred             CCCCcEEehHHhCCCeEEEEEEcCC-CCCcCchhhhHHHHhHHhhc-cCCceEEEeecCc-----hhhHHHHHHHHHHhC
Confidence            3456789999999999999887 55 8865  45667999999986 4679999999832     11666676432 222


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceec
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILN  434 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~  434 (658)
                      .-..++||-+.|.  -+.+.+.|++-      ..+...|+||+|++..
T Consensus       112 ~~~~l~fpllsD~--~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~  157 (216)
T 3sbc_A          112 GLGPINIPLLADT--NHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRH  157 (216)
T ss_dssp             CCCSCSSCEEECT--TSHHHHHHTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             CccCcccceEeCC--CCHHHHHcCCeeccCCceeeEEEEECCCCeEEE
Confidence            2223444322221  12334446662      2478999999998853

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=97.21  E-value=0.00096  Score=59.32  Aligned_cols=68  Identities=9%  Similarity=0.029  Sum_probs=51.3

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      .+|.|+++|.+. ||++|.  .+.|.+++++++  +++.++-|.+.       ++                         
T Consensus        37 ~~k~~lv~f~a~-wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~-------~~-------------------------   81 (136)
T 2l5l_A           37 GDKPAIVDFYAD-WCGPCKMVAPILDELAKEYD--GQIVIYKVDTE-------KE-------------------------   81 (136)
T ss_dssp             CSSCEEEEEECT-TSHHHHHHHHHHHHHHHHTT--TTCEEEEEETT-------TC-------------------------
T ss_pred             CCCEEEEEEECC-cCHHHHHHHHHHHHHHHHhc--CCEEEEEEeCC-------CC-------------------------
Confidence            468899999999 997754  567888888775  34666666541       11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCcee
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                        ..+.+.|++++.|+++++|++|+++
T Consensus        82 --~~l~~~~~v~~~Pt~~~~~~~G~~~  106 (136)
T 2l5l_A           82 --QELAGAFGIRSIPSILFIPMEGKPE  106 (136)
T ss_dssp             --HHHHHHTTCCSSCEEEEECSSSCCE
T ss_pred             --HHHHHHcCCCCCCEEEEECCCCcEE
Confidence              1345569999999999999999986

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=97.20  E-value=0.001  Score=66.43  Aligned_cols=111  Identities=15%  Similarity=0.196  Sum_probs=76.6

Q ss_pred             ccCCCCcEEecccccCcEEEEEEecCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHH-hhcC
Q 046837          315 VDGETRTTVQIHVLKKKHVLLLISRPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKN-LQKR  391 (658)
Q Consensus       315 ~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~-~~~~  391 (658)
                      +-..++++|++++++||.|.|||=-.+|||  +.|+..+.+.|++.+ +.+.+||-||.++     -....+|.+ ...+
T Consensus        41 l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~-~~g~~vigiS~Ds-----~~sh~~w~~~~~~~  114 (219)
T 3tue_A           41 MPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFN-ELNCEVLACSIDS-----EYAHLQWTLQDRKK  114 (219)
T ss_dssp             CTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHH-TTTEEEEEEESSC-----HHHHHHHHHSCGGG
T ss_pred             ccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhc-cCCcEEEEeeCCc-----hhhHHHHhhhhHHh
Confidence            434567889999999999999998443774  567778999999986 5689999999832     126677753 3445


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhcc----CCce--EEEEECCCCcee
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKY----SKKA--IIVSVDPQGRIL  433 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~----~~iP--~LVvL~pqGkv~  433 (658)
                      ..-+.+|||-+-|.  -+.+.+.|++    .+.+  ...||||+|++.
T Consensus       115 ~~~~~l~fpllsD~--~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir  160 (219)
T 3tue_A          115 GGLGTMAIPILADK--TKNIARSYGVLEESQGVAYRGLFIIDPHGMLR  160 (219)
T ss_dssp             TCCCSCSSCEEECT--TSHHHHHTTCEETTTTEECEEEEEECTTSBEE
T ss_pred             cCccccccccccCc--ccHHHHHcCCcccCCCeeEEEEEEECCCCeEE
Confidence            55556666533232  2234455666    2443  789999999884

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=97.06  E-value=0.00055  Score=61.18  Aligned_cols=70  Identities=3%  Similarity=0.004  Sum_probs=47.6

Q ss_pred             cccccCcEEEEEEecCCCCChHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCc
Q 046837          325 IHVLKKKHVLLLISRPDDISQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQ  404 (658)
Q Consensus       325 Is~L~gK~VlLyfSa~~~~~~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~  404 (658)
                      ++..+||.|+++|.+. ||++|...  ...++++.  ..|.++++.+.-       ++                      
T Consensus        35 l~~~~~k~vvv~F~a~-wC~~C~~~--~p~l~~l~--~~~~v~~~~vd~-------~~----------------------   80 (133)
T 3cxg_A           35 FSSTQNSSIVIKFGAV-WCKPCNKI--KEYFKNQL--NYYYVTLVDIDV-------DI----------------------   80 (133)
T ss_dssp             HTC-CCSEEEEEEECT-TCHHHHHT--HHHHHGGG--GTEECEEEEEET-------TT----------------------
T ss_pred             HHhcCCCEEEEEEECC-CCHHHHHH--HHHHHHHH--HhcCEEEEEEec-------cc----------------------
Confidence            4455689999999999 99887642  44555554  245788887721       11                      


Q ss_pred             HHHHHHHHHhhccCCceEEEEE-CCCCc
Q 046837          405 PAVIKYVKEEWKYSKKAIIVSV-DPQGR  431 (658)
Q Consensus       405 ~~~~r~ike~f~~~~iP~LVvL-~pqGk  431 (658)
                         ...+.+.|++++.|+++++ +++|+
T Consensus        81 ---~~~l~~~~~v~~~Pt~~~~~~~~g~  105 (133)
T 3cxg_A           81 ---HPKLNDQHNIKALPTFEFYFNLNNE  105 (133)
T ss_dssp             ---CHHHHHHTTCCSSSEEEEEEEETTE
T ss_pred             ---hHHHHHhcCCCCCCEEEEEEecCCC
Confidence               0234567999999999999 56665

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=97.00  E-value=0.0016  Score=55.73  Aligned_cols=68  Identities=10%  Similarity=0.143  Sum_probs=52.5

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|  +.+.|.+++++++  +++.++.|.+.       ++                  +      
T Consensus        16 ~~~~~lv~f~a~-wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~-------~~------------------~------   61 (112)
T 2voc_A           16 SEGVVLADFWAP-WCGPSKMIAPVLEELDQEMG--DKLKIVKIDVD-------EN------------------Q------   61 (112)
T ss_dssp             SSSEEEEEEECT-TBGGGGGHHHHHHHHHHHHT--TTCEEEEEETT-------TC------------------C------
T ss_pred             CCCEEEEEEECC-CCHHHHHHHHHHHHHHHHhC--CCcEEEEEECC-------CC------------------H------
Confidence            689999999999 99765  4567888888875  35777777752       11                  1      


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         .+.+.|++++.|+++++ ++|+++.
T Consensus        62 ---~l~~~~~v~~~Pt~~~~-~~G~~~~   85 (112)
T 2voc_A           62 ---ETAGKYGVMSIPTLLVL-KDGEVVE   85 (112)
T ss_dssp             ---SHHHHTTCCSBSEEEEE-ETTEEEE
T ss_pred             ---HHHHHcCCCcccEEEEE-eCCEEEE
Confidence               14456999999999999 9999864

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=96.97  E-value=0.0021  Score=53.58  Aligned_cols=68  Identities=9%  Similarity=0.031  Sum_probs=50.7

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      .||.|+++|.+. ||++|.  .+.|.++.++.+  +++.++.|.+.       ++.                        
T Consensus        16 ~~~~~~v~f~~~-~C~~C~~~~~~l~~~~~~~~--~~v~~~~v~~~-------~~~------------------------   61 (105)
T 1nsw_A           16 GDGPVLVDFWAA-WCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVD-------ENP------------------------   61 (105)
T ss_dssp             SSSCEEEEEECT-TCHHHHHHHHHHHHHHHHST--TTCEEEEEETT-------TCH------------------------
T ss_pred             CCCcEEEEEECC-CCHHHHHHHHHHHHHHHHhc--CCcEEEEEECc-------CCH------------------------
Confidence            478899999999 998754  566888877764  34777777651       111                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         .+.+.|++++.|+++++ ++|+++.
T Consensus        62 ---~~~~~~~v~~~Pt~~~~-~~G~~~~   85 (105)
T 1nsw_A           62 ---ETTSQFGIMSIPTLILF-KGGRPVK   85 (105)
T ss_dssp             ---HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---HHHHHcCCccccEEEEE-eCCeEEE
Confidence               24556999999999999 8998764

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=96.90  E-value=0.00028  Score=61.44  Aligned_cols=77  Identities=8%  Similarity=0.060  Sum_probs=49.2

Q ss_pred             EecccccCcEEEEEEecCCCCChHHH--HHH---HHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceee
Q 046837          323 VQIHVLKKKHVLLLISRPDDISQEEI--LFL---SNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSI  397 (658)
Q Consensus       323 V~Is~L~gK~VlLyfSa~~~~~~~~~--~~L---~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAV  397 (658)
                      +..+..+||.|+++|.+. ||++|..  +.|   ..+-+.++  .++  +++.+ |.     +.                
T Consensus        20 ~~~~~~~~k~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~--~~~--~~~~v-d~-----~~----------------   72 (130)
T 2kuc_A           20 LKRAEVEDKLLFVDCFTT-WCGPCKRLSKVVFKDSLVADYFN--RHF--VNLKM-DM-----EK----------------   72 (130)
T ss_dssp             HHHHHHHSSCEEEEECCT-TCTHHHHHHHHGGGCHHHHHHHH--HHS--EEEEE-CS-----SS----------------
T ss_pred             HHHHHhcCCeEEEEEECC-CCccHHHHHHHhcCcHHHHHHHh--cCe--EEEEE-ec-----CC----------------
Confidence            444456899999999999 9988653  334   33322222  233  34444 10     11                


Q ss_pred             cCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          398 QDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       398 pf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         +     ....+.+.|++.+.|+++++|++|+++.
T Consensus        73 ---~-----~~~~~~~~~~v~~~Pt~~~~d~~G~~~~  101 (130)
T 2kuc_A           73 ---G-----EGVELRKKYGVHAYPTLLFINSSGEVVY  101 (130)
T ss_dssp             ---T-----THHHHHHHTTCCSSCEEEEECTTSCEEE
T ss_pred             ---c-----chHHHHHHcCCCCCCEEEEECCCCcEEE
Confidence               1     1234566799999999999999999874

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=96.89  E-value=0.0029  Score=59.32  Aligned_cols=100  Identities=12%  Similarity=0.104  Sum_probs=64.8

Q ss_pred             cEEecccc-cCc-EEEEEEecCCCCChH--H-HHHHHHHHHHhcCCCCee-EEEEecccCCCcchhhHHHHHHhhcC-CC
Q 046837          321 TTVQIHVL-KKK-HVLLLISRPDDISQE--E-ILFLSNMYKDLKESKECR-IVWLPIVDGSIDRQQALDKFKNLQKR-MP  393 (658)
Q Consensus       321 ~kV~Is~L-~gK-~VlLyfSa~~~~~~~--~-~~~L~~iY~~lk~~~~fE-IVwIpivD~s~~W~dde~~F~~~~~~-MP  393 (658)
                      ++|+++++ +|| .|+++|=+. |||+|  | ++.|.+.|++++. .+++ ||-|+..+     .+..++|-+-..- .|
T Consensus        33 ~~v~l~~~~~gk~vvl~~~~a~-wcp~C~~eh~p~l~~~~~~~~~-~g~~~vv~Is~d~-----~~~~~~~~~~~~~~~~  105 (171)
T 2pwj_A           33 STTPVNDIFKDKKVVIFGLPGA-YTGVCSSKHVPPYKHNIDKFKA-KGVDSVICVAIND-----PYTVNAWAEKIQAKDA  105 (171)
T ss_dssp             CCEEHHHHHTTSEEEEEECSCT-TCTTHHHHTHHHHHHTHHHHHH-TTCSEEEEEESSC-----HHHHHHHHHHTTCTTT
T ss_pred             ceEEHHHHhCCCCEEEEEecCC-CCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEeCCC-----HHHHHHHHHHhCCCCc
Confidence            78999996 997 566678888 99865  5 7789999999863 4688 99999732     1255567554431 23


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccCC-----------ceEEEEECCCCceecc
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYSK-----------KAIIVSVDPQGRILNQ  435 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~~-----------iP~LVvL~pqGkv~~~  435 (658)
                      +..+--++   .+..+    .|++..           .|.-+++| +|++...
T Consensus       106 fp~l~D~~---~~~~~----~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~  150 (171)
T 2pwj_A          106 IEFYGDFD---GSFHK----SLELTTDLSAGLLGIRSERWSAYVV-DGKVKAL  150 (171)
T ss_dssp             SEEEECTT---CHHHH----HHTCEEECTTTTCCEEECCEEEEEE-TTEEEEE
T ss_pred             eEEEECCc---cHHHH----HhCCccccccccCCcccceeEEEEE-CCEEEEE
Confidence            32222222   23333    366542           45566667 9999754

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=96.89  E-value=0.0033  Score=52.85  Aligned_cols=68  Identities=13%  Similarity=0.087  Sum_probs=51.7

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|.  .+.|.++.++.+  +++.++.|.+.       ++.                        
T Consensus        24 ~~~~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~--~~v~~~~v~~~-------~~~------------------------   69 (115)
T 1thx_A           24 AEQPVLVYFWAS-WCGPCQLMSPLINLAANTYS--DRLKVVKLEID-------PNP------------------------   69 (115)
T ss_dssp             CSSCEEEEEECT-TCTTHHHHHHHHHHHHHHTT--TTCEEEEEEST-------TCH------------------------
T ss_pred             CCceEEEEEECC-CCHHHHHhHHHHHHHHHHhC--CcEEEEEEEcC-------CCH------------------------
Confidence            478999999999 998764  456888777765  35888887762       111                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         .+.+.|++.+.|+++++ ++|+++.
T Consensus        70 ---~~~~~~~v~~~Pt~~~~-~~G~~~~   93 (115)
T 1thx_A           70 ---TTVKKYKVEGVPALRLV-KGEQILD   93 (115)
T ss_dssp             ---HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---HHHHHcCCCceeEEEEE-cCCEEEE
Confidence               24566999999999999 8999864

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=96.88  E-value=0.0032  Score=52.18  Aligned_cols=68  Identities=9%  Similarity=0.107  Sum_probs=51.4

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++|.|+++|.+. ||++|.  .+.|.+++++.+  +++.++.|.+.       ++.                        
T Consensus        18 ~~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~-------~~~------------------------   63 (106)
T 3die_A           18 ESGVQLVDFWAT-ACGPCKMIAPVLEELAADYE--GKADILKLDVD-------ENP------------------------   63 (106)
T ss_dssp             CSSEEEEEEECS-BCHHHHHHHHHHHHHHHHTT--TTCEEEEEETT-------TCH------------------------
T ss_pred             cCCcEEEEEECC-CCHHHHHHhHHHHHHHHHhc--CCcEEEEEECC-------cCH------------------------
Confidence            789999999999 997754  567888888875  34777777651       111                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         .+.+.|++++.|++++++ +|+.+.
T Consensus        64 ---~~~~~~~v~~~Pt~~~~~-~G~~~~   87 (106)
T 3die_A           64 ---STAAKYEVMSIPTLIVFK-DGQPVD   87 (106)
T ss_dssp             ---HHHHHTTCCSBSEEEEEE-TTEEEE
T ss_pred             ---HHHHhCCCcccCEEEEEe-CCeEEE
Confidence               144568999999999995 898764

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=96.87  E-value=0.0029  Score=52.91  Aligned_cols=68  Identities=9%  Similarity=0.045  Sum_probs=50.1

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++|.|+++|.+. ||++|.  .+.|.++.++.+  +++.++.|.+.       ++.                        
T Consensus        19 ~~~~~~v~f~~~-~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~-------~~~------------------------   64 (108)
T 2trx_A           19 ADGAILVDFWAE-WCGPCKMIAPILDEIADEYQ--GKLTVAKLNID-------QNP------------------------   64 (108)
T ss_dssp             CSSEEEEEEECT-TCHHHHHHHHHHHHHHHHTT--TTEEEEEEETT-------TCT------------------------
T ss_pred             cCCeEEEEEECC-CCHhHHHHHHHHHHHHHHhC--CCcEEEEEECC-------CCH------------------------
Confidence            478999999999 998754  566888887765  35666666541       110                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         .+.+.|++++.|+++++ ++|+++.
T Consensus        65 ---~~~~~~~v~~~Pt~~~~-~~G~~~~   88 (108)
T 2trx_A           65 ---GTAPKYGIRGIPTLLLF-KNGEVAA   88 (108)
T ss_dssp             ---THHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---HHHHHcCCcccCEEEEE-eCCEEEE
Confidence               14456999999999999 8999864

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=96.84  E-value=0.0038  Score=51.73  Aligned_cols=68  Identities=9%  Similarity=0.067  Sum_probs=50.5

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++|.++++|.+. ||++|.  .+.|.++.+++.  +++.++.|.+.       ++.                        
T Consensus        17 ~~~~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~-------~~~------------------------   62 (109)
T 2yzu_A           17 QHPLVLVDFWAE-WCAPCRMIAPILEEIAKEYE--GKLLVAKLDVD-------ENP------------------------   62 (109)
T ss_dssp             HCSEEEEEEECT-TCHHHHHHHHHHHHHHHHTB--TTBEEEEEETT-------TCH------------------------
T ss_pred             CCCeEEEEEECC-CCHHHHHhhHHHHHHHHHhh--CceEEEEEECC-------CCH------------------------
Confidence            378999999999 998754  556888888775  35666666651       111                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         .+.+.|++.+.|+++++ ++|+++.
T Consensus        63 ---~~~~~~~v~~~Pt~~~~-~~g~~~~   86 (109)
T 2yzu_A           63 ---KTAMRYRVMSIPTVILF-KDGQPVE   86 (109)
T ss_dssp             ---HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---hHHHhCCCCcCCEEEEE-eCCcEee
Confidence               24566999999999999 8999764

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=96.83  E-value=0.0033  Score=52.08  Aligned_cols=69  Identities=12%  Similarity=0.073  Sum_probs=50.1

Q ss_pred             ccCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          328 LKKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      .++|.|+++|.+. ||++|.  .+.|.++.++.+  +++.++.|.+.       ++                        
T Consensus        18 ~~~~~~vv~f~~~-~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~-------~~------------------------   63 (106)
T 1xwb_A           18 ASGKLVVLDFFAT-WCGPCKMISPKLVELSTQFA--DNVVVLKVDVD-------EC------------------------   63 (106)
T ss_dssp             HTTSEEEEEEECT-TCHHHHHHHHHHHHHHHHTT--TTEEEEEEETT-------TC------------------------
T ss_pred             cCCCEEEEEEECC-cCHHHHHhhHHHHHHHHHhC--CCeEEEEEecc-------ch------------------------
Confidence            3689999999999 998764  556888877765  45666666651       11                        


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         ..+.+.|++++.|+++++ ++|+++.
T Consensus        64 ---~~~~~~~~v~~~Pt~~~~-~~G~~~~   88 (106)
T 1xwb_A           64 ---EDIAMEYNISSMPTFVFL-KNGVKVE   88 (106)
T ss_dssp             ---HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---HHHHHHcCCCcccEEEEE-cCCcEEE
Confidence               124556999999998777 6898764

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=96.78  E-value=0.0047  Score=51.51  Aligned_cols=67  Identities=15%  Similarity=0.104  Sum_probs=49.5

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ||.|+++|.+. ||++|.  .+.|.+++++.+  +++.++.|...       ++.                         
T Consensus        19 ~~~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~-------~~~-------------------------   63 (107)
T 1dby_A           19 SVPVLVDFWAP-WCGPCRIIAPVVDEIAGEYK--DKLKCVKLNTD-------ESP-------------------------   63 (107)
T ss_dssp             SSCEEEEEECT-TCHHHHHHHHHHHHHHHHTT--TTCEEEEEETT-------TCH-------------------------
T ss_pred             CCcEEEEEECC-CCHhHHHHHHHHHHHHHHhC--CceEEEEEECC-------CCH-------------------------
Confidence            78899999999 998754  567888888775  34777766651       111                         


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceec
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        .+.+.|++++.|+++++ ++|+++.
T Consensus        64 --~~~~~~~v~~~Pt~~~~-~~G~~~~   87 (107)
T 1dby_A           64 --NVASEYGIRSIPTIMVF-KGGKKCE   87 (107)
T ss_dssp             --HHHHHHTCCSSCEEEEE-SSSSEEE
T ss_pred             --HHHHHCCCCcCCEEEEE-eCCEEEE
Confidence              24456899999999888 7998864

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=96.78  E-value=0.0037  Score=52.78  Aligned_cols=68  Identities=13%  Similarity=0.045  Sum_probs=50.5

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|.  .+.|.+++++.+  +++.++.|.+.       ++                         
T Consensus        22 ~~~~~vv~f~~~-~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~-------~~-------------------------   66 (112)
T 1t00_A           22 NDKPVLVDFWAA-WCGPCRQIAPSLEAIAAEYG--DKIEIVKLNID-------EN-------------------------   66 (112)
T ss_dssp             CSSCEEEEEECT-TCHHHHHHHHHHHHHHHHTT--TTCEEEEEETT-------TC-------------------------
T ss_pred             CCCeEEEEEECC-CCHhHHhcCHHHHHHHHHhc--CCeEEEEEEcC-------CC-------------------------
Confidence            378999999999 998754  567888888775  45777777751       11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        +.+.+.|++.+.|+++++ ++|+++.
T Consensus        67 --~~~~~~~~v~~~Pt~~~~-~~G~~~~   91 (112)
T 1t00_A           67 --PGTAAKYGVMSIPTLNVY-QGGEVAK   91 (112)
T ss_dssp             --HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             --HHHHHhCCCCcccEEEEE-eCCEEEE
Confidence              124456999999999888 7998853

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=96.77  E-value=0.0045  Score=51.37  Aligned_cols=68  Identities=10%  Similarity=0.078  Sum_probs=50.6

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++|.|+++|.+. ||++|.  .+.|.++.++.+  +++.++.|.+.       ++.                        
T Consensus        19 ~~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~-------~~~------------------------   64 (107)
T 2i4a_A           19 ASGLVLVDFWAE-WCGPCKMIGPALGEIGKEFA--GKVTVAKVNID-------DNP------------------------   64 (107)
T ss_dssp             CSSEEEEEEECT-TCHHHHHHHHHHHHHHHHHT--TSEEEEEEETT-------TCC------------------------
T ss_pred             CCCEEEEEEECC-CChhHHHHhHHHHHHHHHhC--CcEEEEEEECC-------CCH------------------------
Confidence            478999999999 997754  556888887775  35777766651       110                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         .+.+.|++++.|+++++ ++|+++.
T Consensus        65 ---~~~~~~~v~~~Pt~~~~-~~G~~~~   88 (107)
T 2i4a_A           65 ---ETPNAYQVRSIPTLMLV-RDGKVID   88 (107)
T ss_dssp             ---HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---HHHHhcCCCccCEEEEE-eCCEEEE
Confidence               24456999999999999 9999864

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=96.77  E-value=0.0043  Score=50.81  Aligned_cols=67  Identities=4%  Similarity=-0.011  Sum_probs=49.7

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++|.|+++|.+. ||++|.  .+.|.++.++.+   ++.++.|.+.       ++                         
T Consensus        15 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~---~~~~~~v~~~-------~~-------------------------   58 (104)
T 2e0q_A           15 SHEIAVVDFWAE-WCAPCLILAPIIEELAEDYP---QVGFGKLNSD-------EN-------------------------   58 (104)
T ss_dssp             HSSEEEEEEECT-TCHHHHHHHHHHHHHHHHCT---TSEEEEEETT-------TC-------------------------
T ss_pred             cCCcEEEEEECC-CChhHHHHhHHHHHHHHHcC---CceEEEEECC-------CC-------------------------
Confidence            578999999999 998754  556887777764   2777776651       11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ..+.+.|++++.|+++++ ++|+++.
T Consensus        59 --~~~~~~~~v~~~Pt~~~~-~~g~~~~   83 (104)
T 2e0q_A           59 --PDIAARYGVMSLPTVIFF-KDGEPVD   83 (104)
T ss_dssp             --HHHHHHTTCCSSCEEEEE-ETTEEEE
T ss_pred             --HHHHHhCCccccCEEEEE-ECCeEhh
Confidence              124566999999999999 8998864

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=96.77  E-value=0.0037  Score=54.09  Aligned_cols=68  Identities=10%  Similarity=0.085  Sum_probs=50.8

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      .||.|+|+|.+. ||++|.  .+.|.+++++++  +++.++.|.+.       ++                         
T Consensus        30 ~~k~vlv~f~a~-~C~~C~~~~~~l~~~~~~~~--~~v~~~~vd~d-------~~-------------------------   74 (119)
T 1w4v_A           30 SETPVVVDFHAQ-WCGPCKILGPRLEKMVAKQH--GKVVMAKVDID-------DH-------------------------   74 (119)
T ss_dssp             CSSCEEEEEECT-TCHHHHHHHHHHHHHHHHTT--TSSEEEEEETT-------TT-------------------------
T ss_pred             CCCcEEEEEECC-CCHHHHHHHHHHHHHHHHhc--CCeEEEEEeCC-------CC-------------------------
Confidence            378999999999 997754  556888888765  35777776651       11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ..+.+.|++++.|+++++ ++|+++.
T Consensus        75 --~~l~~~~~v~~~Pt~~~~-~~G~~~~   99 (119)
T 1w4v_A           75 --TDLAIEYEVSAVPTVLAM-KNGDVVD   99 (119)
T ss_dssp             --HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             --HHHHHHcCCCcccEEEEE-eCCcEEE
Confidence              125566999999999999 8998864

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=96.74  E-value=0.0028  Score=54.86  Aligned_cols=67  Identities=10%  Similarity=0.094  Sum_probs=48.3

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|.  .+.|.+++++.+   ++.++-|.+.       +.                         
T Consensus        30 ~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d-------~~-------------------------   73 (116)
T 3qfa_C           30 GDKLVVVDFSAT-WCGPSKMIKPFFHSLSEKYS---NVIFLEVDVD-------DC-------------------------   73 (116)
T ss_dssp             TTSCEEEEEECT-TCHHHHHHHHHHHHHHTTCT---TSEEEEEETT-------TT-------------------------
T ss_pred             CCCEEEEEEECC-CCHHHHHHHHHHHHHHHHCC---CCEEEEEECC-------CC-------------------------
Confidence            689999999999 997754  556777776653   3555555541       11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ..+.+.|++++.|+++++ .+|+.+.
T Consensus        74 --~~l~~~~~v~~~Pt~~~~-~~G~~~~   98 (116)
T 3qfa_C           74 --QDVASECEVKSMPTFQFF-KKGQKVG   98 (116)
T ss_dssp             --HHHHHHTTCCSSSEEEEE-SSSSEEE
T ss_pred             --HHHHHHcCCccccEEEEE-eCCeEEE
Confidence              134566999999999999 7898764

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=96.71  E-value=0.0046  Score=54.36  Aligned_cols=67  Identities=16%  Similarity=0.278  Sum_probs=48.7

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|.  .+.|.+++++..   ++.++.|.+       +++                         
T Consensus        37 ~~k~vvv~f~a~-wC~~C~~~~~~l~~l~~~~~---~v~~~~vd~-------d~~-------------------------   80 (124)
T 1xfl_A           37 SKTLVVVDFTAS-WCGPCRFIAPFFADLAKKLP---NVLFLKVDT-------DEL-------------------------   80 (124)
T ss_dssp             TTCEEEEEEECT-TCHHHHHHHHHHHHHHHHCS---SEEEEEEET-------TTS-------------------------
T ss_pred             cCCEEEEEEECC-CCHHHHHHHHHHHHHHHHCC---CcEEEEEEC-------ccC-------------------------
Confidence            589999999999 997754  566888887763   455555553       111                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ..+.+.|++++.|+++++ ++|+++.
T Consensus        81 --~~l~~~~~v~~~Pt~~~~-~~G~~~~  105 (124)
T 1xfl_A           81 --KSVASDWAIQAMPTFMFL-KEGKILD  105 (124)
T ss_dssp             --HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             --HHHHHHcCCCccCEEEEE-ECCEEEE
Confidence              124566999999999887 8998864

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=96.71  E-value=0.0037  Score=52.88  Aligned_cols=68  Identities=10%  Similarity=0.155  Sum_probs=48.1

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ||.|+++|.+. ||++|.  .+.|.+++++++. .++.++.|.+.       ++                          
T Consensus        21 ~~~~~v~f~a~-wC~~C~~~~~~~~~~~~~~~~-~~~~~~~vd~~-------~~--------------------------   65 (112)
T 3d6i_A           21 DKLIVLYFHTS-WAEPCKALKQVFEAISNEPSN-SNVSFLSIDAD-------EN--------------------------   65 (112)
T ss_dssp             TCCEEEEEECC-C--CHHHHHHHHHHHHHCGGG-TTSEEEEEETT-------TC--------------------------
T ss_pred             CCEEEEEEECC-CCHHHHHHHHHHHHHHHhcCC-CCEEEEEEecc-------cC--------------------------
Confidence            78999999999 998754  5568888877642 34666666641       11                          


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceec
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                       ..+.+.|++++.|+++++ .+|+++.
T Consensus        66 -~~~~~~~~v~~~Pt~~~~-~~G~~~~   90 (112)
T 3d6i_A           66 -SEISELFEISAVPYFIII-HKGTILK   90 (112)
T ss_dssp             -HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -HHHHHHcCCCcccEEEEE-ECCEEEE
Confidence             135566999999999998 6998865

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=96.70  E-value=0.0026  Score=55.33  Aligned_cols=66  Identities=11%  Similarity=0.039  Sum_probs=50.0

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ||.|+++|.+. ||++|.  .+.|.++++++   .++.++.|.+.       +.                          
T Consensus        23 ~~~vlv~f~a~-wC~~C~~~~~~l~~l~~~~---~~v~~~~vd~~-------~~--------------------------   65 (118)
T 2f51_A           23 PGLVLVDFFAT-WCGPCQRLGQILPSIAEAN---KDVTFIKVDVD-------KN--------------------------   65 (118)
T ss_dssp             SSCEEEEEECT-TCHHHHHHHHHHHHHHHHC---TTSEEEEEETT-------TC--------------------------
T ss_pred             CCEEEEEEECC-CCHHHHHHHHHHHHHHHHC---CCeEEEEEECC-------CC--------------------------
Confidence            78999999999 998764  55688888776   56777777651       11                          


Q ss_pred             HHHHHHhhccCCceEEEEECC---CCcee
Q 046837          408 IKYVKEEWKYSKKAIIVSVDP---QGRIL  433 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~p---qGkv~  433 (658)
                       ..+.+.|++++.|+++++++   +|+++
T Consensus        66 -~~~~~~~~i~~~Pt~~~~~~~~~~G~~~   93 (118)
T 2f51_A           66 -GNAADAYGVSSIPALFFVKKEGNEIKTL   93 (118)
T ss_dssp             -HHHHHHTTCCSSSEEEEEEEETTEEEEE
T ss_pred             -HHHHHhcCCCCCCEEEEEeCCCCcceEE
Confidence             12556799999999999987   47765

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=96.68  E-value=0.0044  Score=53.30  Aligned_cols=71  Identities=15%  Similarity=0.170  Sum_probs=51.8

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      .||.|+++|.+. ||++|  +.+.|.+++++.+    .+|+++.+.+     ..+                       ..
T Consensus        28 ~~~~~~v~f~a~-wC~~C~~~~p~l~~~~~~~~----~~v~~~~~~~-----~~~-----------------------~~   74 (118)
T 1zma_A           28 KKETATFFIGRK-TCPYCRKFAGTLSGVVAETK----AHIYFINSEE-----PSQ-----------------------LN   74 (118)
T ss_dssp             TTCCEEEEEECT-TCHHHHHHHHHHHHHHHHHC----CCCEEEETTC-----GGG-----------------------HH
T ss_pred             CCCeEEEEEECC-CCccHHHHHHHHHHHHHhcC----CeEEEEECCC-----cCc-----------------------HH
Confidence            367899999999 99875  4667888888764    4678887621     111                       12


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCcee
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                      ..+.+.+.|++++.|+++++. +|+++
T Consensus        75 ~~~~~~~~~~i~~~Pt~~~~~-~G~~~  100 (118)
T 1zma_A           75 DLQAFRSRYGIPTVPGFVHIT-DGQIN  100 (118)
T ss_dssp             HHHHHHHHHTCCSSCEEEEEE-TTEEE
T ss_pred             HHHHHHHHcCCCCCCeEEEEE-CCEEE
Confidence            234566779999999999995 88876

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=96.67  E-value=0.0042  Score=53.81  Aligned_cols=67  Identities=9%  Similarity=0.125  Sum_probs=48.9

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|.  .+.|.+++++.+   ++.++.|.+.       ++.                        
T Consensus        29 ~~k~vvv~F~a~-wC~~C~~~~p~l~~~~~~~~---~v~~~~vd~~-------~~~------------------------   73 (114)
T 2oe3_A           29 QNDKLVIDFYAT-WCGPCKMMQPHLTKLIQAYP---DVRFVKCDVD-------ESP------------------------   73 (114)
T ss_dssp             HCSEEEEEEECT-TCHHHHHTHHHHHHHHHHCT---TSEEEEEETT-------TCH------------------------
T ss_pred             CCCEEEEEEECC-CCHHHHHHHHHHHHHHHHCC---CCEEEEEECC-------CCH------------------------
Confidence            478999999999 997754  566888887764   2666666541       111                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         .+.+.|++++.|+++++ ++|+++.
T Consensus        74 ---~l~~~~~v~~~Pt~~~~-~~G~~~~   97 (114)
T 2oe3_A           74 ---DIAKECEVTAMPTFVLG-KDGQLIG   97 (114)
T ss_dssp             ---HHHHHTTCCSBSEEEEE-ETTEEEE
T ss_pred             ---HHHHHCCCCcccEEEEE-eCCeEEE
Confidence               24566999999999887 8998863

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=96.65  E-value=0.0047  Score=51.94  Aligned_cols=67  Identities=6%  Similarity=-0.033  Sum_probs=49.1

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++|.|+++|.+. ||++|.  .+.|.++.++.   +++.++.|.+.       ++                         
T Consensus        20 ~~~~v~v~f~a~-wC~~C~~~~~~~~~~~~~~---~~~~~~~vd~~-------~~-------------------------   63 (107)
T 1gh2_A           20 GSRLAVVKFTMR-GCGPCLRIAPAFSSMSNKY---PQAVFLEVDVH-------QC-------------------------   63 (107)
T ss_dssp             TTSCEEEEEECS-SCHHHHHHHHHHHHHHHHC---TTSEEEEEETT-------TS-------------------------
T ss_pred             CCCEEEEEEECC-CChhhHHHHHHHHHHHHHC---CCcEEEEEECc-------cC-------------------------
Confidence            478999999999 998764  45688777776   35666666651       11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ..+.+.|++++.|+++++ .+|+.+.
T Consensus        64 --~~~~~~~~v~~~Pt~~~~-~~G~~~~   88 (107)
T 1gh2_A           64 --QGTAATNNISATPTFQFF-RNKVRID   88 (107)
T ss_dssp             --HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             --HHHHHhcCCCcccEEEEE-ECCeEEE
Confidence              124566999999999999 7888764

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=96.65  E-value=0.0047  Score=52.73  Aligned_cols=67  Identities=9%  Similarity=0.049  Sum_probs=48.9

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|  +.+.|.+++++.+   ++.++-|.+.       +.                         
T Consensus        23 ~~k~vlv~f~a~-wC~~C~~~~p~l~~l~~~~~---~~~~~~vd~~-------~~-------------------------   66 (109)
T 3f3q_A           23 QDKLVVVDFYAT-WCGPCKMIAPMIEKFSEQYP---QADFYKLDVD-------EL-------------------------   66 (109)
T ss_dssp             SSSCEEEEEECT-TCHHHHHHHHHHHHHHHHCT---TSEEEEEETT-------TC-------------------------
T ss_pred             cCCEEEEEEECC-cCHhHHHHHHHHHHHHHHCC---CCEEEEEECC-------CC-------------------------
Confidence            388999999999 99765  4567888888763   3555555541       11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ..+.+.|++++.|++++++ +|+.+.
T Consensus        67 --~~l~~~~~v~~~Pt~~~~~-~G~~~~   91 (109)
T 3f3q_A           67 --GDVAQKNEVSAMPTLLLFK-NGKEVA   91 (109)
T ss_dssp             --HHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             --HHHHHHcCCCccCEEEEEE-CCEEEE
Confidence              1245669999999999998 898764

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=96.64  E-value=0.0039  Score=52.79  Aligned_cols=69  Identities=10%  Similarity=0.026  Sum_probs=48.1

Q ss_pred             ccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          328 LKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      .+||.|+++|.+. ||++|  ..+.|.+++++.+   ++.++.|.+.       ++                      + 
T Consensus        22 ~~~~~vlv~f~a~-wC~~C~~~~~~l~~~~~~~~---~v~~~~vd~~-------~~----------------------~-   67 (111)
T 2pu9_C           22 AGDKPVVLDMFTQ-WCGPSKAMAPKYEKLAEEYL---DVIFLKLDCN-------QE----------------------N-   67 (111)
T ss_dssp             CTTSCEEEEEECT-TCHHHHHHHHHHHHHHHHCT---TSEEEEEECS-------ST----------------------T-
T ss_pred             cCCCEEEEEEECC-cCHhHHHHCHHHHHHHHHCC---CeEEEEEecC-------cc----------------------h-
Confidence            3589999999999 99775  4567888888764   3555554431       11                      1 


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         ..+.+.|++++.|++ +++++|+++.
T Consensus        68 ---~~~~~~~~v~~~Pt~-~~~~~G~~~~   92 (111)
T 2pu9_C           68 ---KTLAKELGIRVVPTF-KILKENSVVG   92 (111)
T ss_dssp             ---HHHHHHHCCSBSSEE-EEESSSSEEE
T ss_pred             ---HHHHHHcCCCeeeEE-EEEeCCcEEE
Confidence               234566999999995 5569999764

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=96.64  E-value=0.0034  Score=52.93  Aligned_cols=67  Identities=7%  Similarity=0.118  Sum_probs=43.8

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++|.|+++|.+. ||++|.  .+.|.++.++.   +++.++-|.+.       +..                        
T Consensus        17 ~~~~vlv~f~a~-wC~~C~~~~p~~~~~~~~~---~~~~~~~vd~~-------~~~------------------------   61 (105)
T 4euy_A           17 EQQLVLLFIKTE-NCGVCDVMLRKVNYVLENY---NYVEKIEILLQ-------DMQ------------------------   61 (105)
T ss_dssp             CSSEEEEEEEES-SCHHHHHHHHHHHHHHHTC---TTEEEEEEEEC-------CC-------------------------
T ss_pred             cCCCEEEEEeCC-CCcchHHHHHHHHHHHHHc---CCceEEEEECC-------CCH------------------------
Confidence            578999999999 998764  55687777765   35666666651       111                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         .+.+.|++++.|+++++. +|+++.
T Consensus        62 ---~l~~~~~v~~~Pt~~~~~-~G~~~~   85 (105)
T 4euy_A           62 ---EIAGRYAVFTGPTVLLFY-NGKEIL   85 (105)
T ss_dssp             -----------CCCCEEEEEE-TTEEEE
T ss_pred             ---HHHHhcCCCCCCEEEEEe-CCeEEE
Confidence               234568999999999995 898863

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=96.63  E-value=0.0062  Score=50.53  Aligned_cols=68  Identities=9%  Similarity=0.055  Sum_probs=49.9

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|.  .+.|.++.++.+  +++.++.|.+.       +..                        
T Consensus        20 ~~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~-------~~~------------------------   65 (109)
T 3tco_A           20 NNKLVLVDCWAE-WCAPCHLYEPIYKKVAEKYK--GKAVFGRLNVD-------ENQ------------------------   65 (109)
T ss_dssp             HSSEEEEEEECT-TCHHHHHHHHHHHHHHHHTT--TTSEEEEEETT-------TCH------------------------
T ss_pred             cCCeEEEEEECC-CCHHHHhhhHHHHHHHHHhC--CCceEEEEccc-------cCH------------------------
Confidence            589999999999 997754  567888888775  34555555541       111                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         .+.+.|++++.|+++++ ++|+.+.
T Consensus        66 ---~~~~~~~i~~~Pt~~~~-~~g~~~~   89 (109)
T 3tco_A           66 ---KIADKYSVLNIPTTLIF-VNGQLVD   89 (109)
T ss_dssp             ---HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---HHHHhcCcccCCEEEEE-cCCcEEE
Confidence               24456899999999999 9998764

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=96.63  E-value=0.0043  Score=51.83  Aligned_cols=70  Identities=6%  Similarity=0.023  Sum_probs=48.3

Q ss_pred             ccCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCC-CCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCc
Q 046837          328 LKKKHVLLLISRPDDISQEE--ILFLSNMYKDLKES-KECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQ  404 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~-~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~  404 (658)
                      +++|.|+++|.+. ||++|.  .+.|.++.++.+.+ .++.++-|.+.       +..                      
T Consensus        19 ~~~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-------~~~----------------------   68 (111)
T 3uvt_A           19 IAEGITFIKFYAP-WCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT-------AER----------------------   68 (111)
T ss_dssp             HHSSEEEEEEECS-SCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETT-------TCH----------------------
T ss_pred             hcCCcEEEEEECC-CChhHHHhhHHHHHHHHHhhccCCceEEEEEecc-------ccH----------------------
Confidence            3488999999999 998764  45577776665433 45555555541       111                      


Q ss_pred             HHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          405 PAVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       405 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                           .+.+.|++++.|+++++ ++|+.+
T Consensus        69 -----~l~~~~~v~~~Pt~~~~-~~g~~~   91 (111)
T 3uvt_A           69 -----NICSKYSVRGYPTLLLF-RGGKKV   91 (111)
T ss_dssp             -----HHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred             -----hHHHhcCCCcccEEEEE-eCCcEE
Confidence                 15566999999999998 778765

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.62  E-value=0.0045  Score=53.72  Aligned_cols=69  Identities=7%  Similarity=0.015  Sum_probs=49.4

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcC--CCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCc
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKE--SKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQ  404 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~--~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~  404 (658)
                      .+|.|+++|.+. ||++|.  .+.|.+++++++.  +.++.++.|.+.       ++                       
T Consensus        24 ~~~~~lv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-------~~-----------------------   72 (133)
T 1x5d_A           24 SEDVWMVEFYAP-WCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDAT-------VN-----------------------   72 (133)
T ss_dssp             SSSEEEEEEECT-TCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETT-------TC-----------------------
T ss_pred             CCCeEEEEEECC-CCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECC-------CC-----------------------
Confidence            378999999999 997754  5678888888752  245666555541       11                       


Q ss_pred             HHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          405 PAVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       405 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                          +.+.+.|++++.|+++++++ |+.+
T Consensus        73 ----~~l~~~~~v~~~Pt~~~~~~-g~~~   96 (133)
T 1x5d_A           73 ----QVLASRYGIRGFPTIKIFQK-GESP   96 (133)
T ss_dssp             ----CHHHHHHTCCSSSEEEEEET-TEEE
T ss_pred             ----HHHHHhCCCCeeCeEEEEeC-CCce
Confidence                13456699999999999998 7743

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.61  E-value=0.0039  Score=54.08  Aligned_cols=68  Identities=9%  Similarity=-0.011  Sum_probs=49.3

Q ss_pred             ccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          328 LKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      ++++ |+++|.+. ||++|  +.+.|.+++++++. .++.++-|.+.       ++.                       
T Consensus        21 ~~~~-vlv~f~a~-wC~~C~~~~p~~~~~~~~~~~-~~v~~~~vd~~-------~~~-----------------------   67 (126)
T 1x5e_A           21 LEGD-WMIEFYAP-WCPACQNLQPEWESFAEWGED-LEVNIAKVDVT-------EQP-----------------------   67 (126)
T ss_dssp             TSSE-EEEEEECS-SCHHHHHHHHHHHHHHHHHGG-GTCEEEEEETT-------TCH-----------------------
T ss_pred             hCCC-EEEEEECC-CCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECc-------CCH-----------------------
Confidence            4454 99999999 99775  45678888887652 35666666641       111                       


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                          .+.+.|++++.|+++++ ++|++.
T Consensus        68 ----~~~~~~~v~~~Pt~~~~-~~G~~~   90 (126)
T 1x5e_A           68 ----GLSGRFIINALPTIYHC-KDGEFR   90 (126)
T ss_dssp             ----HHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred             ----HHHHHcCCcccCEEEEE-eCCeEE
Confidence                15667999999999999 899864

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=96.58  E-value=0.005  Score=55.98  Aligned_cols=67  Identities=15%  Similarity=0.155  Sum_probs=50.0

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|.  .+.|.+++++.   .++.++-|.+.       +.                         
T Consensus        31 ~~~~vvv~F~a~-wC~~C~~~~p~l~~l~~~~---~~v~~~~vd~~-------~~-------------------------   74 (153)
T 2wz9_A           31 AKSLLVVHFWAP-WAPQCAQMNEVMAELAKEL---PQVSFVKLEAE-------GV-------------------------   74 (153)
T ss_dssp             TTSCEEEEEECT-TCHHHHHHHHHHHHHHHHC---TTSEEEEEETT-------TS-------------------------
T ss_pred             CCCeEEEEEECC-CCHhHHHHHHHHHHHHHHc---CCeEEEEEECC-------CC-------------------------
Confidence            388999999999 997754  55688777775   35666666651       11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        +.+.+.|++++.|++++++ +|+++.
T Consensus        75 --~~l~~~~~v~~~Pt~~~~~-~G~~~~   99 (153)
T 2wz9_A           75 --PEVSEKYEISSVPTFLFFK-NSQKID   99 (153)
T ss_dssp             --HHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             --HHHHHHcCCCCCCEEEEEE-CCEEEE
Confidence              1355679999999999999 998864

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=96.58  E-value=0.0079  Score=51.41  Aligned_cols=68  Identities=7%  Similarity=0.081  Sum_probs=47.3

Q ss_pred             ccCcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          328 LKKKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      .++|.++++|.+. ||++|..  +.|.++.++.   .++.++.|.+.       +.                        
T Consensus        17 ~~~~~~vv~f~a~-wC~~C~~~~~~l~~~~~~~---~~v~~~~vd~~-------~~------------------------   61 (110)
T 2l6c_A           17 EGLSDAIVFFHKN-LCPHCKNMEKVLDKFGARA---PQVAISSVDSE-------AR------------------------   61 (110)
T ss_dssp             TTCSEEEEEEECS-SCSTHHHHHHHHHHHHTTC---TTSCEEEEEGG-------GC------------------------
T ss_pred             HcCCCEEEEEECC-CCHhHHHHHHHHHHHHHHC---CCcEEEEEcCc-------CC------------------------
Confidence            3478899999999 9988654  3455544432   35666666541       11                        


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         ..+.+.|++++.|+++++ ++|+++.
T Consensus        62 ---~~l~~~~~v~~~Pt~~~~-~~G~~v~   86 (110)
T 2l6c_A           62 ---PELMKELGFERVPTLVFI-RDGKVAK   86 (110)
T ss_dssp             ---HHHHHHTTCCSSCEEEEE-ESSSEEE
T ss_pred             ---HHHHHHcCCcccCEEEEE-ECCEEEE
Confidence               124566999999999999 8998864

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.58  E-value=0.0039  Score=61.89  Aligned_cols=68  Identities=7%  Similarity=0.055  Sum_probs=53.0

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|  +.+.|.+++++.+  +++.++.|.+.       +..                        
T Consensus        25 ~~~~v~v~f~a~-wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~~-------~~~------------------------   70 (287)
T 3qou_A           25 MTTPVLFYFWSE-RSQHCLQLTPILESLAAQYN--GQFILAKLDCD-------AEQ------------------------   70 (287)
T ss_dssp             TTSCEEEEEECT-TCTTTTTTHHHHHHHHHHHT--SSSEEEEEETT-------TCH------------------------
T ss_pred             CCCeEEEEEECC-CChHHHHHHHHHHHHHHHcC--CCeEEEEEeCc-------cCH------------------------
Confidence            389999999999 99775  5678999988876  45777777651       111                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         .+.+.|+++++|+++++ ++|+++.
T Consensus        71 ---~~~~~~~v~~~Pt~~~~-~~G~~~~   94 (287)
T 3qou_A           71 ---MIAAQFGLRAIPTVYLF-QNGQPVD   94 (287)
T ss_dssp             ---HHHHTTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---HHHHHcCCCCCCeEEEE-ECCEEEE
Confidence               35567999999999999 6898764

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=96.57  E-value=0.0043  Score=54.74  Aligned_cols=68  Identities=9%  Similarity=0.108  Sum_probs=50.7

Q ss_pred             ccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          328 LKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      .+||.|+++|.+. ||++|  +.+.|.+++++.   .++.++.|.+.       +.                        
T Consensus        44 ~~~k~vvv~f~a~-wC~~C~~~~~~l~~l~~~~---~~v~~~~v~~~-------~~------------------------   88 (139)
T 3d22_A           44 RDGKIVLANFSAR-WCGPSRQIAPYYIELSENY---PSLMFLVIDVD-------EL------------------------   88 (139)
T ss_dssp             HHTCCEEEEEECT-TCHHHHHHHHHHHHHHHHC---TTSEEEEEETT-------TS------------------------
T ss_pred             hcCCEEEEEEECC-CCHHHHHHHHHHHHHHHHC---CCCEEEEEeCc-------cc------------------------
Confidence            4699999999999 99775  456788887776   35666666641       11                        


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         ..+.+.|++++.|+++++ ++|+++.
T Consensus        89 ---~~~~~~~~v~~~Pt~~~~-~~G~~~~  113 (139)
T 3d22_A           89 ---SDFSASWEIKATPTFFFL-RDGQQVD  113 (139)
T ss_dssp             ---HHHHHHTTCCEESEEEEE-ETTEEEE
T ss_pred             ---HHHHHHcCCCcccEEEEE-cCCeEEE
Confidence               125566999999999988 8999864

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=96.56  E-value=0.0065  Score=50.88  Aligned_cols=67  Identities=10%  Similarity=0.167  Sum_probs=49.8

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++|.|+++|.+. ||++|.  .+.|.++.++.+  +++.++.|.+.       +..                        
T Consensus        21 ~~~~vlv~f~a~-~C~~C~~~~~~~~~~~~~~~--~~v~~~~vd~~-------~~~------------------------   66 (111)
T 3gnj_A           21 EGKACLVMFSRK-NCHVCQKVTPVLEELRLNYE--ESFGFYYVDVE-------EEK------------------------   66 (111)
T ss_dssp             SCCCEEEEEECS-SCHHHHHHHHHHHHHHHHTT--TTSEEEEEETT-------TCH------------------------
T ss_pred             cCCEEEEEEeCC-CChhHHHHHHHHHHHHHHcC--CceEEEEEECC-------cCh------------------------
Confidence            468899999999 997754  456888877764  35777777751       111                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCcee
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                         .+.+.|++++.|+++++ .+|+.+
T Consensus        67 ---~l~~~~~v~~~Pt~~~~-~~g~~~   89 (111)
T 3gnj_A           67 ---TLFQRFSLKGVPQILYF-KDGEYK   89 (111)
T ss_dssp             ---HHHHHTTCCSSCEEEEE-ETTEEE
T ss_pred             ---hHHHhcCCCcCCEEEEE-ECCEEE
Confidence               34566999999999999 688876

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=96.54  E-value=0.0054  Score=50.86  Aligned_cols=67  Identities=10%  Similarity=0.067  Sum_probs=47.9

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++|.|+++|.+. ||++|.  .+.|.++.++.+   ++.++.|...       +.                         
T Consensus        19 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~---~~~~~~vd~~-------~~-------------------------   62 (105)
T 3m9j_A           19 GDKLVVVDFSAT-WCGPCKMIKPFFHSLSEKYS---NVIFLEVDVD-------DC-------------------------   62 (105)
T ss_dssp             TTSCEEEEEECT-TCHHHHHHHHHHHHHHHHST---TSEEEEEETT-------TC-------------------------
T ss_pred             CCCeEEEEEECC-CChhhHHHHHHHHHHHHHcc---CeEEEEEEhh-------hh-------------------------
Confidence            589999999999 997754  556777777663   3555555541       11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ..+.+.|++++.|+++++ .+|+.+.
T Consensus        63 --~~~~~~~~v~~~Pt~~~~-~~g~~~~   87 (105)
T 3m9j_A           63 --QDVASESEVKSMPTFQFF-KKGQKVG   87 (105)
T ss_dssp             --HHHHHHTTCCBSSEEEEE-ETTEEEE
T ss_pred             --HHHHHHcCCCcCcEEEEE-ECCeEEE
Confidence              124566999999999999 7887763

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=96.53  E-value=0.0057  Score=51.44  Aligned_cols=67  Identities=7%  Similarity=0.022  Sum_probs=49.0

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ||.|+++|.+. ||++|.  .+.|.+++++.+  +++.++.|.+.       ++                          
T Consensus        24 ~~~~vv~f~~~-~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~-------~~--------------------------   67 (112)
T 1ep7_A           24 HKPIVVDFTAT-WCGPCKMIAPLFETLSNDYA--GKVIFLKVDVD-------AV--------------------------   67 (112)
T ss_dssp             TCCEEEEEECT-TCHHHHHHHHHHHHHHHHTT--TTSEEEEEETT-------TT--------------------------
T ss_pred             CCeEEEEEECC-CCHHHHHHHHHHHHHHHHcC--CCeEEEEEECC-------ch--------------------------
Confidence            78999999999 998754  556888887764  35666666641       11                          


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceec
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                       ..+.+.|++++.|+++++ ++|+++.
T Consensus        68 -~~~~~~~~v~~~Pt~~~~-~~G~~~~   92 (112)
T 1ep7_A           68 -AAVAEAAGITAMPTFHVY-KDGVKAD   92 (112)
T ss_dssp             -HHHHHHHTCCBSSEEEEE-ETTEEEE
T ss_pred             -HHHHHHcCCCcccEEEEE-ECCeEEE
Confidence             124556899999998877 7998864

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.52  E-value=0.0084  Score=52.02  Aligned_cols=65  Identities=8%  Similarity=-0.069  Sum_probs=48.9

Q ss_pred             CcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|+++|.+. ||++|  +.+.|.+++++++  +.+.++.|.+.       +.                          
T Consensus        35 ~~~~lv~f~a~-wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~-------~~--------------------------   78 (130)
T 2dml_A           35 DGLWLVEFYAP-WCGHCQRLTPEWKKAATALK--DVVKVGAVNAD-------KH--------------------------   78 (130)
T ss_dssp             SSCEEEEEECT-TCSTTGGGHHHHHHHHHHTT--TTSEEEEEETT-------TC--------------------------
T ss_pred             CCeEEEEEECC-CCHHHHhhCHHHHHHHHHhc--CceEEEEEeCC-------CC--------------------------
Confidence            68899999999 99765  5667888888875  34666655541       11                          


Q ss_pred             HHHHHHhhccCCceEEEEECCCCc
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGR  431 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGk  431 (658)
                       +.+.+.|++++.|++++++++|+
T Consensus        79 -~~l~~~~~v~~~Pt~~~~~~~~~  101 (130)
T 2dml_A           79 -QSLGGQYGVQGFPTIKIFGANKN  101 (130)
T ss_dssp             -HHHHHHHTCCSSSEEEEESSCTT
T ss_pred             -HHHHHHcCCCccCEEEEEeCCCC
Confidence             13456699999999999999987

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=96.51  E-value=0.0034  Score=55.62  Aligned_cols=68  Identities=9%  Similarity=0.060  Sum_probs=50.8

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++|.|+++|.+. ||++|.  .+.|.+++++++  +++.++.|.+.       ++.                        
T Consensus        39 ~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~~-------~~~------------------------   84 (128)
T 2o8v_B           39 ADGAILVDFWAE-WCGPAKMIAPILDEIADEYQ--GKLTVAKLNID-------QNP------------------------   84 (128)
T ss_dssp             CSSEEEEEEECS-SCHHHHHTHHHHHHHHHHTT--TTEEEEEEETT-------TCC------------------------
T ss_pred             cCCEEEEEEECC-CCHHHHHHhHHHHHHHHHhc--CCeEEEEEECC-------CCH------------------------
Confidence            478999999999 998754  567888888775  35777777652       110                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         .+.+.|++++.|+++++ ++|+++.
T Consensus        85 ---~l~~~~~v~~~Pt~~~~-~~G~~~~  108 (128)
T 2o8v_B           85 ---GTAPKYGIRGIPTLLLF-KNGEVAA  108 (128)
T ss_dssp             ---TTSGGGTCCSSSEEEEE-ETTEEEE
T ss_pred             ---HHHHHcCCCccCEEEEE-eCCEEEE
Confidence               13456899999999999 8999864

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=96.51  E-value=0.0076  Score=51.30  Aligned_cols=67  Identities=9%  Similarity=0.039  Sum_probs=48.8

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|.  .+.|.+++++.+   ++.++.|.+.       +..                        
T Consensus        25 ~~k~vlv~f~a~-~C~~C~~~~~~l~~l~~~~~---~v~~~~vd~~-------~~~------------------------   69 (112)
T 1syr_A           25 QNELVIVDFFAE-WCGPCKRIAPFYEECSKTYT---KMVFIKVDVD-------EVS------------------------   69 (112)
T ss_dssp             HCSEEEEEEECT-TCHHHHHHHHHHHHHHHHCT---TSEEEEEETT-------TTH------------------------
T ss_pred             cCCeEEEEEECC-CCHHHHHHHHHHHHHHHHcC---CCEEEEEECC-------CCH------------------------
Confidence            589999999999 997754  556888887753   4666666541       111                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         .+.+.|++.+.|+++++ ++|+++.
T Consensus        70 ---~~~~~~~v~~~Pt~~~~-~~G~~~~   93 (112)
T 1syr_A           70 ---EVTEKENITSMPTFKVY-KNGSSVD   93 (112)
T ss_dssp             ---HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---HHHHHcCCCcccEEEEE-ECCcEEE
Confidence               34566999999998877 5898764

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=96.50  E-value=0.0078  Score=49.74  Aligned_cols=68  Identities=9%  Similarity=0.075  Sum_probs=49.2

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      .+|.++++|.+. ||++|.  .+.|.+++++++  +++.++.|.+.       ++                         
T Consensus        17 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~-------~~-------------------------   61 (105)
T 1fb6_A           17 SEVPVMVDFWAP-WCGPCKLIAPVIDELAKEYS--GKIAVYKLNTD-------EA-------------------------   61 (105)
T ss_dssp             CSSCEEEEEECT-TCHHHHHHHHHHHHHHHHTT--TTCEEEEEETT-------TC-------------------------
T ss_pred             CCCcEEEEEECC-CChHHHHHHHHHHHHHHHhc--CceEEEEEcCc-------ch-------------------------
Confidence            378899999999 997754  556888888775  34666666541       11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ..+.+.|++++.|+++++ ++|+++.
T Consensus        62 --~~~~~~~~v~~~Pt~~~~-~~g~~~~   86 (105)
T 1fb6_A           62 --PGIATQYNIRSIPTVLFF-KNGERKE   86 (105)
T ss_dssp             --HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             --HHHHHhCCCCcccEEEEE-eCCeEEE
Confidence              124566999999998888 6998764

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.48  E-value=0.0034  Score=54.71  Aligned_cols=69  Identities=16%  Similarity=0.125  Sum_probs=49.0

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++|.|+++|.+. ||++|.  .+.|.+++++++...++.++.|-+       ++.                  +.     
T Consensus        24 ~~~~vlv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~-------~~~------------------~~-----   72 (133)
T 2dj3_A           24 PKKDVLIEFYAP-WCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDA-------TAN------------------DI-----   72 (133)
T ss_dssp             TTSEEEEEECCT-TCSHHHHHHHHHHHHHHHHTTSSSEEEEEECT-------TTS------------------CC-----
T ss_pred             CCCcEEEEEECC-CChhHHHHHHHHHHHHHHhcCCCCEEEEEecC-------CcC------------------HH-----
Confidence            489999999999 998754  567999998886545555544433       111                  11     


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCce
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRI  432 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv  432 (658)
                          +.+.|++++.|+++++++.|++
T Consensus        73 ----~~~~~~v~~~Pt~~~~~~g~~~   94 (133)
T 2dj3_A           73 ----TNDQYKVEGFPTIYFAPSGDKK   94 (133)
T ss_dssp             ----CCSSCCCSSSSEEEEECTTCTT
T ss_pred             ----HHhhcCCCcCCEEEEEeCCCcc
Confidence                1235899999999999987754

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=96.44  E-value=0.0055  Score=54.55  Aligned_cols=75  Identities=13%  Similarity=0.109  Sum_probs=52.3

Q ss_pred             ccCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          328 LKKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      +++ .|+++|.+. ||++|.  .+.|.+++++.+    +.++.|.+.+.     .+....                    
T Consensus        30 ~~~-~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~----v~~~~vd~~~~-----~~~~~~--------------------   78 (135)
T 3emx_A           30 LQG-DAILAVYSK-TCPHCHRDWPQLIQASKEVD----VPIVMFIWGSL-----IGEREL--------------------   78 (135)
T ss_dssp             HTS-SEEEEEEET-TCHHHHHHHHHHHHHHTTCC----SCEEEEEECTT-----CCHHHH--------------------
T ss_pred             hCC-cEEEEEECC-cCHhhhHhChhHHHHHHHCC----CEEEEEECCCc-----hhhhhh--------------------
Confidence            444 799999999 997754  566777776653    77888876331     122111                    


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                      ...+.+.+.|++++.|++++++ +|+++.
T Consensus        79 d~~~~l~~~~~v~~~Pt~~~~~-~G~~v~  106 (135)
T 3emx_A           79 SAARLEMNKAGVEGTPTLVFYK-EGRIVD  106 (135)
T ss_dssp             HHHHHHHHHHTCCSSSEEEEEE-TTEEEE
T ss_pred             hhhHHHHHHcCCceeCeEEEEc-CCEEEE
Confidence            2234566779999999999999 998764

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=96.41  E-value=0.0065  Score=52.15  Aligned_cols=67  Identities=10%  Similarity=0.157  Sum_probs=48.5

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++|.|+++|.+. ||++|.  .+.|.+++++.+   ++.++.|.+.       ++                         
T Consensus        33 ~~~~~vv~f~~~-~C~~C~~~~~~l~~~~~~~~---~~~~~~vd~~-------~~-------------------------   76 (122)
T 2vlu_A           33 AKKLVVIDFTAS-WCGPCRIMAPVFADLAKKFP---NAVFLKVDVD-------EL-------------------------   76 (122)
T ss_dssp             TTCCEEEEEECT-TCHHHHHHHHHHHHHHHHCT---TSEEEEEETT-------TC-------------------------
T ss_pred             cCCEEEEEEECC-CCHHHHHHHHHHHHHHHHCC---CcEEEEEECC-------CC-------------------------
Confidence            478999999999 998754  556888877764   2666666541       11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ..+.+.|++++.|+++++ ++|+++.
T Consensus        77 --~~~~~~~~v~~~Pt~~~~-~~G~~~~  101 (122)
T 2vlu_A           77 --KPIAEQFSVEAMPTFLFM-KEGDVKD  101 (122)
T ss_dssp             --HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             --HHHHHHcCCCcccEEEEE-eCCEEEE
Confidence              124556999999998877 8998863

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=96.40  E-value=0.0054  Score=53.28  Aligned_cols=67  Identities=12%  Similarity=0.159  Sum_probs=45.6

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      .+|.|++.|.|. ||++|.  .+.+.++.++.   .+  ++|+.+ |     .| +                     .  
T Consensus        19 ~~k~vvv~F~a~-wC~~C~~~~p~~~~~~~~~---~~--~~~~~v-d-----~d-~---------------------~--   62 (105)
T 3zzx_A           19 GNKLVVIDFYAT-WCGPCKMIAPKLEELSQSM---SD--VVFLKV-D-----VD-E---------------------C--   62 (105)
T ss_dssp             TTSEEEEEEECT-TCHHHHHHHHHHHHHHHHC---TT--EEEEEE-E-----TT-T---------------------C--
T ss_pred             CCCEEEEEEECC-CCCCccCCCcchhhhhhcc---CC--eEEEEE-e-----cc-c---------------------C--
Confidence            378999999999 998875  34455555443   33  556665 2     01 1                     0  


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ..|.+.|++++.|+++++ .+|+.+.
T Consensus        63 --~~l~~~~~V~~~PT~~~~-~~G~~v~   87 (105)
T 3zzx_A           63 --EDIAQDNQIACMPTFLFM-KNGQKLD   87 (105)
T ss_dssp             --HHHHHHTTCCBSSEEEEE-ETTEEEE
T ss_pred             --HHHHHHcCCCeecEEEEE-ECCEEEE
Confidence              124567999999999888 6898764

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=95.39  E-value=0.00054  Score=59.79  Aligned_cols=77  Identities=8%  Similarity=0.128  Sum_probs=51.1

Q ss_pred             cEEecccccCcEEEEEEecCCCCChHHH--HHH---HHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCce
Q 046837          321 TTVQIHVLKKKHVLLLISRPDDISQEEI--LFL---SNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWY  395 (658)
Q Consensus       321 ~kV~Is~L~gK~VlLyfSa~~~~~~~~~--~~L---~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWy  395 (658)
                      ..+.....+||.|+++|.+. ||++|..  +.|   .++.+.++  +++.++-|.+.       +++             
T Consensus        10 ~~~~~~~~~~k~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~vd~~-------~~~-------------   66 (130)
T 2lst_A           10 EALALAQAHGRMVMVYFHSE-HCPYCQQMNTFVLSDPGVSRLLE--ARFVVASVSVD-------TPE-------------   66 (130)
Confidence            34566667899999999999 9987643  445   55554443  34555554431       110             


Q ss_pred             eecCCCCCcHHHHHHHHHhhccCCceEEEEECCC-Cce
Q 046837          396 SIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQ-GRI  432 (658)
Q Consensus       396 AVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pq-Gkv  432 (658)
                                  ...+.+.|++++.|+++++||+ |++
T Consensus        67 ------------~~~~~~~~~v~~~Pt~~~~d~~~G~~   92 (130)
T 2lst_A           67 ------------GQELARRYRVPGTPTFVFLVPKAGAW   92 (130)
Confidence                        1234556899999999999985 876

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=96.35  E-value=0.005  Score=52.84  Aligned_cols=67  Identities=7%  Similarity=-0.147  Sum_probs=49.6

Q ss_pred             CcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|+++|.+. ||++|  ..+.|.+++++++  +++.++-|.+.       +..                         
T Consensus        21 ~~~~lv~f~a~-~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~-------~~~-------------------------   65 (122)
T 3aps_A           21 KTHWVVDFYAP-WCGPCQNFAPEFELLARMIK--GKVRAGKVDCQ-------AYP-------------------------   65 (122)
T ss_dssp             SSCEEEEEECT-TCHHHHHHHHHHHHHHHHHT--TTCEEEEEETT-------TCH-------------------------
T ss_pred             CCeEEEEEECC-CCHHHHHHHHHHHHHHHHhc--CCeEEEEEeCc-------CCH-------------------------
Confidence            68899999999 99775  4567888888875  35666666541       111                         


Q ss_pred             HHHHHHhhccCCceEEEEECCCCcee
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                        .+.+.|++++.|++++++++|++.
T Consensus        66 --~~~~~~~v~~~Pt~~~~~~~~~~~   89 (122)
T 3aps_A           66 --QTCQKAGIKAYPSVKLYQYERAKK   89 (122)
T ss_dssp             --HHHHHTTCCSSSEEEEEEEEGGGT
T ss_pred             --HHHHHcCCCccceEEEEeCCCccc
Confidence              245669999999999999888753

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=96.34  E-value=0.00099  Score=62.42  Aligned_cols=93  Identities=10%  Similarity=0.096  Sum_probs=58.3

Q ss_pred             ccCcEEEEEEecCCCCChHHH--HHHHH---HHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 046837          328 LKKKHVLLLISRPDDISQEEI--LFLSN---MYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAM  402 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~~~--~~L~~---iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~  402 (658)
                      -+||.|+|.|.|. ||++|..  +.+.+   +.+.++    ..+|.|-+++      +..                  + 
T Consensus        42 ~~~KpVlV~F~A~-WC~~Ck~m~p~~~~~~~~~~~~~----~~fv~V~vD~------e~~------------------~-   91 (151)
T 3ph9_A           42 KSKKPLMVIHHLE-DCQYSQALKKVFAQNEEIQEMAQ----NKFIMLNLMH------ETT------------------D-   91 (151)
T ss_dssp             HHTCCEEEEECCT-TCHHHHHHHHHHHHCHHHHHHHH----HTCEEEEESS------CCS------------------C-
T ss_pred             HcCCcEEEEEECC-CCHhHHHHHHHHhcCHHHHHHhh----cCeEEEEecC------Cch------------------h-
Confidence            3589999999999 9988764  23332   222222    2345555521      100                  0 


Q ss_pred             CcHHHHHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHHhhhc
Q 046837          403 IQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKE  462 (658)
Q Consensus       403 i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~  462 (658)
                        .      ...++++++|++++++|+|+++..    ++-..+.+-|+++.+..+++-+.
T Consensus        92 --~------~~~~~v~~~PT~~f~~~~G~~v~~----~~G~~~~~~~~~~~~~~~~ll~~  139 (151)
T 3ph9_A           92 --K------NLSPDGQYVPRIMFVDPSLTVRAD----IAGRYSNRLYTYEPRDLPLLIEN  139 (151)
T ss_dssp             --G------GGCTTCCCSSEEEEECTTSCBCTT----CCCSCTTSTTCCCGGGHHHHHHH
T ss_pred             --h------HhhcCCCCCCEEEEECCCCCEEEE----EeCCcCCcccccchhhHHHHHHH
Confidence              0      123678999999999999999862    22344557788888777666543

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=96.34  E-value=0.0074  Score=57.93  Aligned_cols=81  Identities=11%  Similarity=0.042  Sum_probs=48.6

Q ss_pred             ccccCcEEEEEEecCCCCChHHHH-----HHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCC
Q 046837          326 HVLKKKHVLLLISRPDDISQEEIL-----FLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDP  400 (658)
Q Consensus       326 s~L~gK~VlLyfSa~~~~~~~~~~-----~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~  400 (658)
                      ..-+||.|+|.|.+. ||++|...     ...++-+.++  +  .+|+|.+ |    .++..+-=..|            
T Consensus        35 A~~~~KpVlvdF~A~-WC~~Ck~m~~~~f~~~~va~~l~--~--~fv~ikV-D----~de~~~l~~~y------------   92 (173)
T 3ira_A           35 ARKENKPVFLSIGYS-TCHWCHMMAHESFEDEEVAGLMN--E--AFVSIKV-D----REERPDIDNIY------------   92 (173)
T ss_dssp             HHHHTCCEEEEEECT-TCHHHHHHHHHTTTCHHHHHHHH--H--HCEEEEE-E----TTTCHHHHHHH------------
T ss_pred             HHHhCCCEEEecccc-hhHhhccccccccCCHHHHHHHH--h--cCceeee-C----CcccCcHHHHH------------
Confidence            345699999999999 99876541     1122222232  1  3567776 3    12211110111            


Q ss_pred             CCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          401 AMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       401 ~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                             ..++...+++.++|++|+++|+|+++..
T Consensus        93 -------~~~~q~~~gv~g~Pt~v~l~~dG~~v~~  120 (173)
T 3ira_A           93 -------MTVCQIILGRGGWPLNIIMTPGKKPFFA  120 (173)
T ss_dssp             -------HHHHHHHHSCCCSSEEEEECTTSCEEEE
T ss_pred             -------HHHHHHHcCCCCCcceeeECCCCCceee
Confidence                   1123334799999999999999999753

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=96.33  E-value=0.029  Score=63.94  Aligned_cols=146  Identities=14%  Similarity=0.026  Sum_probs=87.7

Q ss_pred             cccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 046837          325 IHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAM  402 (658)
Q Consensus       325 Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~  402 (658)
                      .+.++||.|++.|.+. ||++|  +.+.|.+++++++  +++.++.|...       +..+                   
T Consensus       450 ~~~~~~~~vlv~F~a~-wC~~c~~~~p~~~~~a~~~~--~~v~~~~vd~~-------~~~~-------------------  500 (780)
T 3apo_A          450 FPASDKEPWLVDFFAP-WSPPSRALLPELRKASTLLY--GQLKVGTLDCT-------IHEG-------------------  500 (780)
T ss_dssp             SCTTCCSCEEEEEECT-TCHHHHHHHHHHHHHHHHTT--TTCEEEEEETT-------TCHH-------------------
T ss_pred             HHHcCCCeEEEEEECC-CCHHHHHHhHHHHHHHHHhc--CCeEEEEEeCC-------CCHH-------------------
Confidence            3345899999999999 99765  5677999998886  45666666641       1111                   


Q ss_pred             CcHHHHHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHHhhhcCCCchhhcccCCCh-hhhhh
Q 046837          403 IQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLELLVGDIDA-TILEW  481 (658)
Q Consensus       403 i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~e~w~le~Lv~~id~-~I~~~  481 (658)
                              +.+.|++++.|++++++ +|++....        |    +++.+.+.+.-++-   ++.-|..++. ...+.
T Consensus       501 --------~~~~~~v~~~Pt~~~~~-~g~~~~~~--------g----~~~~~~l~~fi~~~---~~~~v~~l~~~~f~~~  556 (780)
T 3apo_A          501 --------LCNMYNIQAYPTTVVFN-QSSIHEYE--------G----HHSAEQILEFIEDL---RNPSVVSLTPSTFNEL  556 (780)
T ss_dssp             --------HHHHTTCCSSSEEEEEE-TTEEEEEC--------S----CSCHHHHHHHHHHH---HSCSEEECCHHHHHHH
T ss_pred             --------HHHHcCCCcCCeEEEEc-CCceeeec--------C----cccHHHHHHHHHhh---cccceeecCcccHHHH
Confidence                    55679999999999994 57653221        2    23433333221110   0000111111 22233


Q ss_pred             hcC---CcEEEEEccCCchH---HHHHHHHHHHHHhhcCCceeEEEeecc
Q 046837          482 MKE---ERFICLYGGNDEAW---IRKFRNSAKDVASKAQINWGMAYVGKK  525 (658)
Q Consensus       482 i~e---gK~I~LYgg~d~~W---ir~FT~~~~~i~~~~~~~~E~v~Vgkd  525 (658)
                      +..   ++.++++|.+  .|   |+++.+.+.++|+.....+-++.|..+
T Consensus       557 v~~~~~~~~~lv~F~a--p~C~~c~~~~p~~~~lA~~~~~~v~~~~vd~~  604 (780)
T 3apo_A          557 VKQRKHDEVWMVDFYS--PWSHPSQVLMPEWKRMARTLTGLINVGSVDCG  604 (780)
T ss_dssp             TTTCCTTCCEEEEEEC--TTCHHHHHHHHHHHHHHHHHTTTSEEEEEETT
T ss_pred             hhccCCCCeEEEEEEC--CCCHHHHHhhHHHHHHHHHhhCCeEEEEEECc
Confidence            333   5667777777  56   688999999998875445555555444

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=96.32  E-value=0.011  Score=50.44  Aligned_cols=68  Identities=9%  Similarity=0.066  Sum_probs=49.7

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      .+|.++++|.+. ||++|.  .+.|.++.++.+  +++.++.|.+.       ++.                        
T Consensus        29 ~~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~-------~~~------------------------   74 (121)
T 2i1u_A           29 SNKPVLVDFWAT-WCGPCKMVAPVLEEIATERA--TDLTVAKLDVD-------TNP------------------------   74 (121)
T ss_dssp             CSSCEEEEEECT-TCHHHHHHHHHHHHHHHHTT--TTCEEEEEETT-------TCH------------------------
T ss_pred             CCCcEEEEEECC-CCHHHHHHHHHHHHHHHHhc--CCeEEEEEECC-------CCH------------------------
Confidence            378899999999 997754  556887777764  35777777651       111                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         .+.+.|++++.|+++++ ++|+++.
T Consensus        75 ---~~~~~~~i~~~Pt~~~~-~~g~~~~   98 (121)
T 2i1u_A           75 ---ETARNFQVVSIPTLILF-KDGQPVK   98 (121)
T ss_dssp             ---HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---HHHHhcCCCcCCEEEEE-ECCEEEE
Confidence               24566999999999988 5998864

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=96.31  E-value=0.0082  Score=53.15  Aligned_cols=67  Identities=3%  Similarity=0.007  Sum_probs=49.3

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++|.|+++|.+. ||++|.  .+.|.+++++.   .++.++.|.+.       ++                         
T Consensus        36 ~~k~vvv~F~a~-wC~~C~~~~p~l~~l~~~~---~~v~~~~vd~d-------~~-------------------------   79 (125)
T 1r26_A           36 EDILTVAWFTAV-WCGPCKTIERPMEKIAYEF---PTVKFAKVDAD-------NN-------------------------   79 (125)
T ss_dssp             SSSCEEEEEECT-TCHHHHHTHHHHHHHHHHC---TTSEEEEEETT-------TC-------------------------
T ss_pred             cCCEEEEEEECC-cCHhHHHHHHHHHHHHHHC---CCCEEEEEECC-------CC-------------------------
Confidence            478999999999 997754  55688887776   35666666651       11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ..+.+.|++++.|+++++ ++|+++.
T Consensus        80 --~~l~~~~~v~~~Pt~~i~-~~G~~~~  104 (125)
T 1r26_A           80 --SEIVSKCRVLQLPTFIIA-RSGKMLG  104 (125)
T ss_dssp             --HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             --HHHHHHcCCCcccEEEEE-eCCeEEE
Confidence              125566999999998887 8998764

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=96.28  E-value=0.011  Score=49.62  Aligned_cols=67  Identities=12%  Similarity=0.261  Sum_probs=47.7

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|.  .+.|.++.++..   ++.++.|.+.       +.                         
T Consensus        25 ~~~~~vv~f~~~-~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~-------~~-------------------------   68 (113)
T 1ti3_A           25 SQKLIVVDFTAS-WCPPCKMIAPIFAELAKKFP---NVTFLKVDVD-------EL-------------------------   68 (113)
T ss_dssp             SSSEEEEEEECS-SCHHHHHHHHHHHHHHHHCS---SEEEEEEETT-------TC-------------------------
T ss_pred             cCCeEEEEEECC-CCHHHHHHHHHHHHHHHhCC---CcEEEEEEcc-------cc-------------------------
Confidence            488999999999 998764  456777777653   4555555541       11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ..+.+.|++++.|+++++ ++|+++.
T Consensus        69 --~~~~~~~~v~~~Pt~~~~-~~G~~~~   93 (113)
T 1ti3_A           69 --KAVAEEWNVEAMPTFIFL-KDGKLVD   93 (113)
T ss_dssp             --HHHHHHHHCSSTTEEEEE-ETTEEEE
T ss_pred             --HHHHHhCCCCcccEEEEE-eCCEEEE
Confidence              123456899999999998 6898764

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.24  E-value=0.0085  Score=52.63  Aligned_cols=69  Identities=16%  Similarity=0.146  Sum_probs=49.4

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCC-CCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKES-KECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~-~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      ++|.|+++|.+. ||++|  +.+.|.+++++++.. .++.++.|-+       +++                        
T Consensus        33 ~~~~vlv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~-------~~~------------------------   80 (140)
T 2dj1_A           33 DKDTVLLEFYAP-WCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDA-------TSA------------------------   80 (140)
T ss_dssp             TCSEEEEEECCT-TCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECT-------TTC------------------------
T ss_pred             cCCeEEEEEECC-CCHHHHHhhHHHHHHHHHHhccCCceEEEEEeC-------ccc------------------------
Confidence            478999999999 99776  466799999888643 2344444332       111                        


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                         ..+.+.|++++.|+++++ .+|++.
T Consensus        81 ---~~~~~~~~v~~~Pt~~~~-~~G~~~  104 (140)
T 2dj1_A           81 ---SMLASKFDVSGYPTIKIL-KKGQAV  104 (140)
T ss_dssp             ---HHHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred             ---HHHHHHCCCCccCeEEEE-ECCcEE
Confidence               235567999999999999 789854

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=96.22  E-value=0.012  Score=48.50  Aligned_cols=67  Identities=9%  Similarity=0.113  Sum_probs=48.5

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|.  .+.|.++.++..   ++.++.|.+.       +.                         
T Consensus        18 ~~~~~~v~f~~~-~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~-------~~-------------------------   61 (104)
T 2vim_A           18 KGRLIVVDFFAQ-WCGPCRNIAPKVEALAKEIP---EVEFAKVDVD-------QN-------------------------   61 (104)
T ss_dssp             TTSCEEEEEECT-TCHHHHHHHHHHHHHHHHCT---TSEEEEEETT-------TC-------------------------
T ss_pred             CCCeEEEEEECC-CCHHHHHhhHHHHHHHHHCC---CCEEEEEecc-------CC-------------------------
Confidence            588999999999 998754  456777777653   5667666651       11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ..+.+.|++++.|++++++ +|+.+.
T Consensus        62 --~~~~~~~~v~~~Pt~~~~~-~g~~~~   86 (104)
T 2vim_A           62 --EEAAAKYSVTAMPTFVFIK-DGKEVD   86 (104)
T ss_dssp             --HHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             --HHHHHHcCCccccEEEEEe-CCcEEE
Confidence              1244569999999988885 898764

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=96.21  E-value=0.0097  Score=53.13  Aligned_cols=66  Identities=14%  Similarity=0.165  Sum_probs=49.4

Q ss_pred             CcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|+++|.+. ||++|  +.+.|.++.++++  +++.++.|.+.       +..                         
T Consensus        24 ~~~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~-------~~~-------------------------   68 (140)
T 3hz4_A           24 KKPVVVMFYSP-ACPYCKAMEPYFEEYAKEYG--SSAVFGRINIA-------TNP-------------------------   68 (140)
T ss_dssp             SSCEEEEEECT-TCHHHHHHHHHHHHHHHHHT--TTSEEEEEETT-------TCH-------------------------
T ss_pred             CCcEEEEEECC-CChhHHHHHHHHHHHHHHhC--CceEEEEEECC-------cCH-------------------------
Confidence            78999999999 99765  4567888888775  34666666651       111                         


Q ss_pred             HHHHHHhhccCCceEEEEECCCCcee
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                        .+.+.|++++.|+++++ .+|+.+
T Consensus        69 --~l~~~~~v~~~Pt~~~~-~~G~~~   91 (140)
T 3hz4_A           69 --WTAEKYGVQGTPTFKFF-CHGRPV   91 (140)
T ss_dssp             --HHHHHHTCCEESEEEEE-ETTEEE
T ss_pred             --hHHHHCCCCcCCEEEEE-eCCcEE
Confidence              24556999999999999 788876

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=96.21  E-value=0.012  Score=49.76  Aligned_cols=67  Identities=12%  Similarity=0.150  Sum_probs=47.9

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|.  .+.|.++.++.+   ++.++.|.+ |      +.                         
T Consensus        27 ~~~~~vv~f~~~-~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~-~------~~-------------------------   70 (118)
T 2vm1_A           27 TGKLVIIDFTAS-WCGPCRVIAPVFAEYAKKFP---GAIFLKVDV-D------EL-------------------------   70 (118)
T ss_dssp             HTCCEEEEEECT-TCHHHHHHHHHHHHHHHHCT---TSEEEEEET-T------TS-------------------------
T ss_pred             CCCEEEEEEECC-CCHhHHHHhHHHHHHHHHCC---CcEEEEEEc-c------cC-------------------------
Confidence            488999999999 998764  556777777653   455555553 1      11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        +.+.+.|++++.|+++++ ++|+++.
T Consensus        71 --~~~~~~~~v~~~Pt~~~~-~~g~~~~   95 (118)
T 2vm1_A           71 --KDVAEAYNVEAMPTFLFI-KDGEKVD   95 (118)
T ss_dssp             --HHHHHHTTCCSBSEEEEE-ETTEEEE
T ss_pred             --HHHHHHcCCCcCcEEEEE-eCCeEEE
Confidence              124556999999999988 7898764

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=96.19  E-value=0.012  Score=52.72  Aligned_cols=69  Identities=7%  Similarity=0.063  Sum_probs=50.4

Q ss_pred             ccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          328 LKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      -++|.|+++|.+. ||++|  +.+.|.+++++.+  +++.++-|.+.       ++.                       
T Consensus        53 ~~~k~vlv~F~a~-wC~~C~~~~p~l~~~~~~~~--~~~~~~~vd~~-------~~~-----------------------   99 (148)
T 3p2a_A           53 QDDLPMVIDFWAP-WCGPCRSFAPIFAETAAERA--GKVRFVKVNTE-------AEP-----------------------   99 (148)
T ss_dssp             TCSSCEEEEEECS-SCHHHHHHHHHHHHHHHHTT--TTCEEEEEETT-------TCH-----------------------
T ss_pred             hcCCcEEEEEECC-CCHHHHHHHHHHHHHHHHcC--CceEEEEEECc-------CCH-----------------------
Confidence            4578999999999 99765  4567888888875  34666655541       111                       


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                          .+.+.|++++.|+++++ .+|+.+.
T Consensus       100 ----~l~~~~~v~~~Pt~~~~-~~G~~~~  123 (148)
T 3p2a_A          100 ----ALSTRFRIRSIPTIMLY-RNGKMID  123 (148)
T ss_dssp             ----HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ----HHHHHCCCCccCEEEEE-ECCeEEE
Confidence                24566999999999999 5898764

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=96.19  E-value=0.0009  Score=62.24  Aligned_cols=76  Identities=9%  Similarity=0.096  Sum_probs=49.9

Q ss_pred             ecccccCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCC
Q 046837          324 QIHVLKKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPA  401 (658)
Q Consensus       324 ~Is~L~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~  401 (658)
                      .....+||.|+|+|.+. ||++|.  .+.|.++.+..+  .+.+++.|.+.       ++++.                 
T Consensus        40 ~~~~~~~k~vlv~F~a~-WC~~C~~~~p~l~~~~~~~~--~~~~~~~v~~d-------~~~~~-----------------   92 (164)
T 1sen_A           40 KEAAASGLPLMVIIHKS-WCGACKALKPKFAESTEISE--LSHNFVMVNLE-------DEEEP-----------------   92 (164)
T ss_dssp             HHHHHHTCCEEEEEECT-TCHHHHHHHHHHHTCHHHHH--HHTTSEEEEEE-------GGGSC-----------------
T ss_pred             HHHHhcCCeEEEEEECC-CCHHHHHHHHHHHHHHHHhh--cCCeEEEEEec-------CCchH-----------------
Confidence            33456799999999999 998764  556666544322  23567777763       21110                 


Q ss_pred             CCcHHHHHHHHHhhcc--CCceEEEEECCCCceecc
Q 046837          402 MIQPAVIKYVKEEWKY--SKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       402 ~i~~~~~r~ike~f~~--~~iP~LVvL~pqGkv~~~  435 (658)
                               +.+.|++  .++|+++++|++|+++..
T Consensus        93 ---------~~~~~~~~~~~~Pt~~~~d~~G~~~~~  119 (164)
T 1sen_A           93 ---------KDEDFSPDGGYIPRILFLDPSGKVHPE  119 (164)
T ss_dssp             ---------SCGGGCTTCSCSSEEEEECTTSCBCTT
T ss_pred             ---------HHHHhcccCCcCCeEEEECCCCCEEEE
Confidence                     0123556  569999999999998754

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=96.17  E-value=0.024  Score=58.15  Aligned_cols=147  Identities=12%  Similarity=0.109  Sum_probs=83.1

Q ss_pred             cEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHH
Q 046837          331 KHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVI  408 (658)
Q Consensus       331 K~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~  408 (658)
                      +.++++|.+. ||+++.  .+.|.++.++++  +.  |.|+-+ |.      ++..                       -
T Consensus       136 ~~~~v~F~~~-~~~~~~~~~~~~~~~A~~~~--~~--i~f~~v-d~------~~~~-----------------------~  180 (361)
T 3uem_A          136 KTHILLFLPK-SVSDYDGKLSNFKTAAESFK--GK--ILFIFI-DS------DHTD-----------------------N  180 (361)
T ss_dssp             CEEEEEECCS-SSSSHHHHHHHHHHHHGGGT--TT--CEEEEE-CT------TSGG-----------------------G
T ss_pred             CcEEEEEEeC-CchhHHHHHHHHHHHHHHcc--Cc--eEEEEe-cC------ChHH-----------------------H
Confidence            4688999999 997644  556788877776  33  555554 20      1100                       1


Q ss_pred             HHHHHhhccCC--ceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHHhhhcC----------------CCc---h
Q 046837          409 KYVKEEWKYSK--KAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEK----------------PWT---L  467 (658)
Q Consensus       409 r~ike~f~~~~--iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~e----------------~w~---l  467 (658)
                      +.+.+.|++++  .|++++++..+...         .|..+.-++|.+.+.+.-++-                .|.   +
T Consensus       181 ~~~~~~fgi~~~~~P~~~~~~~~~~~~---------ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v  251 (361)
T 3uem_A          181 QRILEFFGLKKEECPAVRLITLEEEMT---------KYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPV  251 (361)
T ss_dssp             HHHHHHTTCCTTTCSEEEEEECC--CC---------EECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTTSSS
T ss_pred             HHHHHHcCCCccCCccEEEEEcCCccc---------ccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCcccccCCc
Confidence            23445599987  99999998744221         122122345555544433221                111   1


Q ss_pred             hhcccCCChhhhhhh-cCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCC--ceeEEEeec
Q 046837          468 ELLVGDIDATILEWM-KEERFICLYGGNDE-AWIRKFRNSAKDVASKAQI--NWGMAYVGK  524 (658)
Q Consensus       468 e~Lv~~id~~I~~~i-~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~--~~E~v~Vgk  524 (658)
                      ..| .+-  ...+.+ ..+|.++++|.+.+ ..|+++.+.+.++++....  .+-++.|..
T Consensus       252 ~~l-~~~--~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~  309 (361)
T 3uem_A          252 KVL-VGK--NFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDS  309 (361)
T ss_dssp             EEE-CTT--THHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEET
T ss_pred             EEe-ecC--chhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEEC
Confidence            111 111  222223 48999999999942 4459999999999886433  355554443

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=96.13  E-value=0.0098  Score=51.27  Aligned_cols=68  Identities=10%  Similarity=0.028  Sum_probs=47.1

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|.  .+.|.+++++.+   ++.++.|...       ++                      +  
T Consensus        36 ~~~~~vv~f~a~-wC~~C~~~~~~l~~~~~~~~---~~~~~~vd~~-------~~----------------------~--   80 (124)
T 1faa_A           36 GDKPVVLDMFTQ-WCGPCKAMAPKYEKLAEEYL---DVIFLKLDCN-------QE----------------------N--   80 (124)
T ss_dssp             TTSCEEEEEECT-TCHHHHHHHHHHHHHHHHCT---TSEEEEEECS-------ST----------------------T--
T ss_pred             CCCEEEEEEECC-cCHhHHHHhHHHHHHHHHCC---CCEEEEEecC-------cc----------------------h--
Confidence            689999999999 998754  567888887764   3444444431       11                      1  


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        +.+.+.|++++.|++++. ++|+++.
T Consensus        81 --~~~~~~~~v~~~Pt~~~~-~~G~~~~  105 (124)
T 1faa_A           81 --KTLAKELGIRVVPTFKIL-KENSVVG  105 (124)
T ss_dssp             --HHHHHHHCCSSSSEEEEE-ETTEEEE
T ss_pred             --HHHHHHcCCCeeeEEEEE-eCCcEEE
Confidence              234556999999996655 8898763

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=96.12  E-value=0.0073  Score=54.85  Aligned_cols=69  Identities=7%  Similarity=0.021  Sum_probs=51.1

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      .+|.|+++|.+. ||++|  +.+.|.+++++++  +++.++.|-+.       +..                  +     
T Consensus        22 ~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d-------~~~------------------~-----   68 (142)
T 1qgv_A           22 EDRVVVIRFGHD-WDPTCMKMDEVLYSIAEKVK--NFAVIYLVDIT-------EVP------------------D-----   68 (142)
T ss_dssp             SSSEEEEEEECT-TSHHHHHHHHHHHHHHHHHT--TTEEEEEEETT-------TCC------------------T-----
T ss_pred             CCCEEEEEEECC-CCHHHHHHHHHHHHHHHHhC--CCeEEEEEccc-------cCH------------------H-----
Confidence            378999999999 99775  4567999888875  35777776652       110                  1     


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                          +.+.|+++++|+++++ .+|+.+..
T Consensus        69 ----~~~~~~i~~~Pt~~~~-~~G~~v~~   92 (142)
T 1qgv_A           69 ----FNKMYELYDPCTVMFF-FRNKHIMI   92 (142)
T ss_dssp             ----TTTSSCSCSSCEEEEE-ETTEEEEE
T ss_pred             ----HHHHcCCCCCCEEEEE-ECCcEEEE
Confidence                3456999999999999 48887753

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=96.11  E-value=0.0094  Score=51.00  Aligned_cols=67  Identities=9%  Similarity=0.138  Sum_probs=45.2

Q ss_pred             ccCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          328 LKKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      .+||.|+++|.+. ||++|.  .+.|.+++++.    ++.++-|..       ++.                        
T Consensus        31 ~~~~~~vv~f~a~-wC~~C~~~~~~~~~~~~~~----~~~~~~vd~-------~~~------------------------   74 (117)
T 2xc2_A           31 HKNKLVVVDFFAT-WCGPCKTIAPLFKELSEKY----DAIFVKVDV-------DKL------------------------   74 (117)
T ss_dssp             TTTSCEEEEEECT-TCHHHHHHHHHHHHHHTTS----SSEEEEEET-------TTS------------------------
T ss_pred             CCCCEEEEEEECC-CCHhHHHHhHHHHHHHHHc----CcEEEEEEC-------Ccc------------------------
Confidence            3688999999999 998764  44566665543    344444433       111                        


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         ..+.+.|++++.|+++++ ++|+++.
T Consensus        75 ---~~~~~~~~v~~~Pt~~~~-~~G~~~~   99 (117)
T 2xc2_A           75 ---EETARKYNISAMPTFIAI-KNGEKVG   99 (117)
T ss_dssp             ---HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---HHHHHHcCCCccceEEEE-eCCcEEE
Confidence               124556999999998887 7898764

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=96.11  E-value=0.011  Score=54.34  Aligned_cols=68  Identities=12%  Similarity=0.039  Sum_probs=50.9

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      .+|.|+++|.+. ||++|  +.+.|.+++++++  +++.++-|.+.       ++                         
T Consensus        63 ~~~~vlv~F~a~-wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~-------~~-------------------------  107 (155)
T 2ppt_A           63 DDLPLLVDFWAP-WCGPCRQMAPQFQAAAATLA--GQVRLAKIDTQ-------AH-------------------------  107 (155)
T ss_dssp             CSSCEEEEEECT-TCHHHHHHHHHHHHHHHHHT--TTCEEEEEETT-------TS-------------------------
T ss_pred             CCCcEEEEEECC-CCHHHHHHHHHHHHHHHHcc--CCEEEEEEeCC-------cc-------------------------
Confidence            578999999999 99775  4567888888875  34666666541       11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ..+.+.|+++++|+++++ ++|+++.
T Consensus       108 --~~l~~~~~i~~~Pt~~~~-~~G~~~~  132 (155)
T 2ppt_A          108 --PAVAGRHRIQGIPAFILF-HKGRELA  132 (155)
T ss_dssp             --THHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             --HHHHHHcCCCcCCEEEEE-eCCeEEE
Confidence              125567999999999999 7998864

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=96.11  E-value=0.042  Score=57.17  Aligned_cols=99  Identities=17%  Similarity=0.144  Sum_probs=64.0

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW  394 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW  394 (658)
                      ..+|+.|++++++||.|.|+|=-.+|||.|  |+..+.    +. ..++++||=||.++     -+..+.|-+-. .+|+
T Consensus        11 ~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~----~~-~~~~~~v~gis~D~-----~~~~~~f~~~~-~l~f   79 (322)
T 4eo3_A           11 TDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFS----RE-NFEKAQVVGISRDS-----VEALKRFKEKN-DLKV   79 (322)
T ss_dssp             ETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHH----HS-CCTTEEEEEEESCC-----HHHHHHHHHHH-TCCS
T ss_pred             CCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHH----HH-hhCCCEEEEEeCCC-----HHHHHHHHHhh-CCce
Confidence            467889999999999999999533155444  333232    22 23689999999731     12666786643 4554


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccC----CceEEEEECCCCcee
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYS----KKAIIVSVDPQGRIL  433 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~----~iP~LVvL~pqGkv~  433 (658)
                      .-+--++   .    .+.+.|++-    .+|+..|+||+|++.
T Consensus        80 p~l~D~~---~----~v~~~ygv~~~~~~~r~tfiId~~G~i~  115 (322)
T 4eo3_A           80 TLLSDPE---G----ILHEFFNVLENGKTVRSTFLIDRWGFVR  115 (322)
T ss_dssp             EEEECTT---C----HHHHHTTCEETTEECCEEEEECTTSBEE
T ss_pred             EEEEcCc---h----HHHHhcCCCCCCcCccEEEEECCCCEEE
Confidence            4443332   2    344458873    478899999999996

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=96.10  E-value=0.01  Score=54.32  Aligned_cols=66  Identities=20%  Similarity=0.104  Sum_probs=48.7

Q ss_pred             CcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|++.|.|. ||++|  +.+.|.+++++++  +.+.++-|-++       +.                          
T Consensus        23 ~k~vlv~F~a~-WC~~C~~~~p~l~~l~~~~~--~~~~~~~vd~d-------~~--------------------------   66 (149)
T 3gix_A           23 EKVLVLRFGRD-EDPVCLQLDDILSKTSSDLS--KMAAIYLVDVD-------QT--------------------------   66 (149)
T ss_dssp             SSEEEEEEECT-TSHHHHHHHHHHHHHHTTTT--TTEEEEEEETT-------TC--------------------------
T ss_pred             CCEEEEEEECC-CCHHHHHHHHHHHHHHHHcc--CceEEEEEECC-------cC--------------------------
Confidence            78999999999 99775  4567888887764  34666655541       11                          


Q ss_pred             HHHHHHhhccCCceEEEEECCCCcee
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                       ..+.+.|++.+.|+++ +.++|+.+
T Consensus        67 -~~l~~~~~v~~~Pt~~-~~~~G~~v   90 (149)
T 3gix_A           67 -AVYTQYFDISYIPSTV-FFFNGQHM   90 (149)
T ss_dssp             -CHHHHHTTCCSSSEEE-EEETTEEE
T ss_pred             -HHHHHHcCCCccCeEE-EEECCeEE
Confidence             0245669999999999 77899887

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=96.08  E-value=0.063  Score=51.00  Aligned_cols=150  Identities=10%  Similarity=0.060  Sum_probs=77.7

Q ss_pred             ccCcEEEEEEecCCCCChHHHHHHHHHHHHhcC-CCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          328 LKKKHVLLLISRPDDISQEEILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~~~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++++.++++|++..||++|.  .+..+++++.+ .+++.++.|-.        ++ .                       
T Consensus        20 ~~~~v~lv~f~~~~~C~~C~--~~~~~~~~la~~~~~v~~~~vd~--------~~-~-----------------------   65 (226)
T 1a8l_A           20 MVNPVKLIVFVRKDHCQYCD--QLKQLVQELSELTDKLSYEIVDF--------DT-P-----------------------   65 (226)
T ss_dssp             CCSCEEEEEEECSSSCTTHH--HHHHHHHHHHTTCTTEEEEEEET--------TS-H-----------------------
T ss_pred             cCCCeEEEEEecCCCCchhH--HHHHHHHHHHhhCCceEEEEEeC--------CC-c-----------------------
Confidence            45667778888754898864  34555555533 34555555543        11 0                       


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCcee--ccchHHHHHHhCCccccCChhhHHHhhhcCCCchhhcccCCChhh-hhhhc
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRIL--NQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLELLVGDIDATI-LEWMK  483 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~--~~nA~~mI~~wG~~AFPFT~~r~eeL~~~e~w~le~Lv~~id~~I-~~~i~  483 (658)
                      ..+.+.+.|++++.|+++++. +|+..  .-.        |.   | +.....++-..-- ....-+..++... .....
T Consensus        66 ~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~~--------G~---~-~~~~l~~~l~~~l-~~~~~~~~l~~~~~~~~~~  131 (226)
T 1a8l_A           66 EGKELAKRYRIDRAPATTITQ-DGKDFGVRYF--------GL---P-AGHEFAAFLEDIV-DVSREETNLMDETKQAIRN  131 (226)
T ss_dssp             HHHHHHHHTTCCSSSEEEEEE-TTBCCSEEEE--------SC---C-CTTHHHHHHHHHH-HHHHTCCCCCHHHHHHHTT
T ss_pred             ccHHHHHHcCCCcCceEEEEc-CCceeeEEEe--------cc---C-cHHHHHHHHHHHH-hhcCCCCCCCHHHHHHHHh
Confidence            112345669999999999993 44321  111        11   1 1111111100000 0000001222222 12222


Q ss_pred             -CCcEEEEEccCCc-hHHHHHHHHHHHHHhhcC----CceeEEEeecc
Q 046837          484 -EERFICLYGGNDE-AWIRKFRNSAKDVASKAQ----INWGMAYVGKK  525 (658)
Q Consensus       484 -egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~----~~~E~v~Vgkd  525 (658)
                       .++.++++|.+.+ ..|+++.+.+.++++..+    ..+.++.|.-+
T Consensus       132 ~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~  179 (226)
T 1a8l_A          132 IDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI  179 (226)
T ss_dssp             CCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGG
T ss_pred             cCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcc
Confidence             4555488888842 556999999999977643    46777777665

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=96.05  E-value=0.0078  Score=52.32  Aligned_cols=69  Identities=7%  Similarity=0.004  Sum_probs=48.0

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|.  .+.|.++.++.+. .++.++.|.+.       ++                         
T Consensus        32 ~~k~vvv~f~a~-~C~~C~~~~~~l~~l~~~~~~-~~v~~~~vd~d-------~~-------------------------   77 (121)
T 2j23_A           32 GDKVVVIDFWAT-WCGPCKMIGPVFEKISDTPAG-DKVGFYKVDVD-------EQ-------------------------   77 (121)
T ss_dssp             SSSCEEEEEECT-TCSTHHHHHHHHHHHHTSTHH-HHSEEEEEETT-------TC-------------------------
T ss_pred             CCCEEEEEEECC-CCHhHHHHHHHHHHHHHHCcC-CcEEEEEEECc-------CC-------------------------
Confidence            478899999999 998765  4457666655431 13677776651       11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ..+.+.|++.+.|+++++ ++|+++.
T Consensus        78 --~~~~~~~~v~~~Pt~~~~-~~G~~~~  102 (121)
T 2j23_A           78 --SQIAQEVGIRAMPTFVFF-KNGQKID  102 (121)
T ss_dssp             --HHHHHHHTCCSSSEEEEE-ETTEEEE
T ss_pred             --HHHHHHcCCCcccEEEEE-ECCeEEe
Confidence              124456899999999988 5898764

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.99  E-value=0.016  Score=51.34  Aligned_cols=68  Identities=6%  Similarity=-0.054  Sum_probs=47.6

Q ss_pred             CcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|+++|.+. ||++|  +.+.|.+++++.+. .++.++.|-+.       +..                         
T Consensus        26 ~~~vlv~f~a~-wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~-------~~~-------------------------   71 (137)
T 2dj0_A           26 RVTWIVEFFAN-WSNDCQSFAPIYADLSLKYNC-TGLNFGKVDVG-------RYT-------------------------   71 (137)
T ss_dssp             TSCEEEEECCT-TCSTTTTTHHHHHHHHHHHCS-SSCEEEECCTT-------TCH-------------------------
T ss_pred             CCEEEEEEECC-CCHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCc-------cCH-------------------------
Confidence            56899999999 99765  56778888888752 35555555431       111                         


Q ss_pred             HHHHHHhhccC------CceEEEEECCCCceec
Q 046837          408 IKYVKEEWKYS------KKAIIVSVDPQGRILN  434 (658)
Q Consensus       408 ~r~ike~f~~~------~iP~LVvL~pqGkv~~  434 (658)
                        .+.+.|+++      +.|+++++ ++|+++.
T Consensus        72 --~~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~  101 (137)
T 2dj0_A           72 --DVSTRYKVSTSPLTKQLPTLILF-QGGKEAM  101 (137)
T ss_dssp             --HHHHHTTCCCCSSSSCSSEEEEE-SSSSEEE
T ss_pred             --HHHHHccCcccCCcCCCCEEEEE-ECCEEEE
Confidence              133457776      99999999 7898864

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=95.96  E-value=0.022  Score=50.39  Aligned_cols=68  Identities=10%  Similarity=0.052  Sum_probs=48.9

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +++.|+++|.+. ||++|  +.+.|.+++++++  +++.++.|.+.       ++.                        
T Consensus        49 ~~~~vvv~f~~~-~C~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~-------~~~------------------------   94 (140)
T 1v98_A           49 GAPLTLVDFFAP-WCGPCRLVSPILEELARDHA--GRLKVVKVNVD-------EHP------------------------   94 (140)
T ss_dssp             CCCEEEEEEECT-TCHHHHHHHHHHHHHHHHTT--TTEEEEEEETT-------TCH------------------------
T ss_pred             cCCCEEEEEECC-CCHHHHHHHHHHHHHHHHcc--CceEEEEEECC-------CCH------------------------
Confidence            343499999999 99775  4556888887765  35666666651       111                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                         .+.+.|++++.|+++++ ++|+++.
T Consensus        95 ---~l~~~~~v~~~Pt~~~~-~~G~~~~  118 (140)
T 1v98_A           95 ---GLAARYGVRSVPTLVLF-RRGAPVA  118 (140)
T ss_dssp             ---HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---HHHHHCCCCccCEEEEE-eCCcEEE
Confidence               25567999999999999 7999764

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=95.85  E-value=0.0045  Score=54.56  Aligned_cols=68  Identities=10%  Similarity=0.093  Sum_probs=44.2

Q ss_pred             cCcEEEEEEecCCCCC--------------hHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837          329 KKKHVLLLISRPDDIS--------------QEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM  392 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~--------------~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M  392 (658)
                      +||.|+++|.+. ||+              +|.  .+.+.+++++.+  +++.++-|.+.       ++           
T Consensus        20 ~~k~vlv~F~a~-wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~--~~~~~~~vd~d-------~~-----------   78 (123)
T 1oaz_A           20 ADGAILVDFWAE-WCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQ--GKLTVAKLNID-------QN-----------   78 (123)
T ss_dssp             CSSEEEEEEECS-SCSCBSSSTTSCCSCCCCCCTTHHHHTTC---------CEEEEEETT-------SC-----------
T ss_pred             CCCeEEEEEECC-CCccccccccccccCCCCcHHHHHHHHHHHHHhc--CCeEEEEEECC-------CC-----------
Confidence            489999999999 999              753  445555554443  34666665541       11           


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                             +         .+.+.|++++.|+++++ ++|+++.
T Consensus        79 -------~---------~l~~~~~v~~~Pt~~~~-~~G~~~~  103 (123)
T 1oaz_A           79 -------P---------GTAPKYGIRGIPTLLLF-KNGEVAA  103 (123)
T ss_dssp             -------T---------TTGGGGTCCBSSEEEEE-ESSSEEE
T ss_pred             -------H---------HHHHHcCCCccCEEEEE-ECCEEEE
Confidence                   0         13456999999999999 9999864

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=95.82  E-value=0.022  Score=54.43  Aligned_cols=68  Identities=9%  Similarity=-0.083  Sum_probs=51.0

Q ss_pred             ccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          328 LKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      .+||.|+++|.+. ||++|  +.+.+.+++++++  +++.++.|-+.       +..                       
T Consensus       112 ~~~~~vlv~F~a~-wC~~C~~~~p~~~~l~~~~~--~~v~~~~vd~~-------~~~-----------------------  158 (210)
T 3apq_A          112 NSGELWFVNFYSP-GCSHCHDLAPTWREFAKEVD--GLLRIGAVNCG-------DDR-----------------------  158 (210)
T ss_dssp             HHSCCEEEEEECT-TCHHHHHHHHHHHHHHHHTB--TTBEEEEEETT-------TCH-----------------------
T ss_pred             ccCCcEEEEEeCC-CChhHHHHHHHHHHHHHHhc--CceEEEEEECC-------ccH-----------------------
Confidence            5689999999999 99775  4567888888875  34666665541       111                       


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                          .+.+.|++++.|+++++ ++|+++
T Consensus       159 ----~l~~~~~v~~~Pt~~~~-~~G~~~  181 (210)
T 3apq_A          159 ----MLCRMKGVNSYPSLFIF-RSGMAA  181 (210)
T ss_dssp             ----HHHHHTTCCSSSEEEEE-CTTSCC
T ss_pred             ----HHHHHcCCCcCCeEEEE-ECCCce
Confidence                24556999999999999 899874

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=95.80  E-value=0.01  Score=49.88  Aligned_cols=69  Identities=13%  Similarity=0.062  Sum_probs=48.3

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCC-CCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKES-KECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~-~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      ++|.|+++|.+. ||++|  +.+.|.+++++++.. .++.++-|-.         ++                .+     
T Consensus        23 ~~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~---------~~----------------~~-----   71 (120)
T 1mek_A           23 AHKYLLVEFYAP-WCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDA---------TE----------------ES-----   71 (120)
T ss_dssp             HCSEEEEEEECS-SCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEET---------TT----------------CC-----
T ss_pred             cCCeEEEEEECC-CCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcC---------CC----------------CH-----
Confidence            578999999999 99765  466788888887643 3444444332         11                11     


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                          .+.+.|++++.|+++++ ++|+.+
T Consensus        72 ----~~~~~~~v~~~Pt~~~~-~~g~~~   94 (120)
T 1mek_A           72 ----DLAQQYGVRGYPTIKFF-RNGDTA   94 (120)
T ss_dssp             ----SSHHHHTCCSSSEEEEE-ESSCSS
T ss_pred             ----HHHHHCCCCcccEEEEE-eCCCcC
Confidence                23345899999999999 688765

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=95.67  E-value=0.027  Score=54.95  Aligned_cols=69  Identities=6%  Similarity=-0.086  Sum_probs=52.4

Q ss_pred             CcEEEEEEecCCCCChH--HHHHHHHHHHHhcC-CCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +|.|+++|.+. ||++|  +.+.+.+++++++. +..+.++.|.+.+       ++                        
T Consensus        30 ~~~vlv~F~a~-wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~-------~~------------------------   77 (244)
T 3q6o_A           30 RSAWAVEFFAS-WCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAE-------ET------------------------   77 (244)
T ss_dssp             SSEEEEEEECT-TCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTS-------TT------------------------
T ss_pred             CCeEEEEEECC-cCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCc-------hh------------------------
Confidence            48999999999 99765  56789999999864 3578888888621       11                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCc
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGR  431 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGk  431 (658)
                       -+.+.+.|++++.|+++++++.++
T Consensus        78 -~~~l~~~~~v~~~Pt~~~~~~g~~  101 (244)
T 3q6o_A           78 -NSAVCRDFNIPGFPTVRFFXAFTX  101 (244)
T ss_dssp             -THHHHHHTTCCSSSEEEEECTTCC
T ss_pred             -hHHHHHHcCCCccCEEEEEeCCCc
Confidence             123556799999999999997433

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.44  E-value=0.039  Score=49.27  Aligned_cols=63  Identities=13%  Similarity=0.107  Sum_probs=44.9

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ||.|+++|.+. ||++|.  .+.|.++.++.   .  .+.|+.+ |.    ++.           |              
T Consensus        30 ~~~vvv~f~a~-wC~~C~~~~p~l~~la~~~---~--~v~~~~v-d~----~~~-----------~--------------   73 (135)
T 2dbc_A           30 DLWVVIHLYRS-SVPMCLVVNQHLSVLARKF---P--ETKFVKA-IV----NSC-----------I--------------   73 (135)
T ss_dssp             SCEEEEEECCT-TCHHHHHHHHHHHHHHHHC---S--SEEEEEE-CC----SSS-----------C--------------
T ss_pred             CCEEEEEEECC-CChHHHHHHHHHHHHHHHC---C--CcEEEEE-Eh----hcC-----------c--------------
Confidence            68999999999 998764  45677777664   2  3556665 10    111           0              


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceec
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                           +.|++++.|+++++. +|+++.
T Consensus        74 -----~~~~i~~~Pt~~~~~-~G~~v~   94 (135)
T 2dbc_A           74 -----EHYHDNCLPTIFVYK-NGQIEG   94 (135)
T ss_dssp             -----SSCCSSCCSEEEEES-SSSCSE
T ss_pred             -----ccCCCCCCCEEEEEE-CCEEEE
Confidence                 358999999999997 898764

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=95.39  E-value=0.057  Score=46.93  Aligned_cols=71  Identities=15%  Similarity=0.130  Sum_probs=48.3

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCC-CCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKES-KECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~-~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      .+|.|+++|.+. ||++|  ..+.+.++.++++.. ..-.|.++.+ |-    ++.                        
T Consensus        32 ~~~~vlv~F~a~-wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~v-d~----~~~------------------------   81 (127)
T 3h79_A           32 PEKDVFVLYYVP-WSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARI-DG----EKY------------------------   81 (127)
T ss_dssp             TTCEEEEEEECT-TCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEE-ET----TTC------------------------
T ss_pred             CCCCEEEEEECC-ccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEE-Ec----ccc------------------------
Confidence            389999999999 99775  456788887776432 1223555554 10    111                        


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCce
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRI  432 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv  432 (658)
                         +.+.+.|++++.|+++++.+.|++
T Consensus        82 ---~~l~~~~~v~~~Pt~~~~~~g~~~  105 (127)
T 3h79_A           82 ---PDVIERMRVSGFPTMRYYTRIDKQ  105 (127)
T ss_dssp             ---HHHHHHTTCCSSSEEEEECSSCSS
T ss_pred             ---HhHHHhcCCccCCEEEEEeCCCCC
Confidence               135566999999999999887764

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=95.25  E-value=0.026  Score=54.60  Aligned_cols=68  Identities=10%  Similarity=0.102  Sum_probs=50.2

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++|.|+++|.+. ||++|  ..+.|.+++++++  +++.++.|.+.       +.                  ++     
T Consensus        29 ~~k~vvv~F~a~-wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d-------~~------------------~~-----   75 (222)
T 3dxb_A           29 ADGAILVDFWAE-WCGPCKMIAPILDEIADEYQ--GKLTVAKLNID-------QN------------------PG-----   75 (222)
T ss_dssp             CSSCEEEEEECT-TCHHHHHHHHHHHHHHHHTT--TTCEEEEEETT-------TC------------------TT-----
T ss_pred             cCCEEEEEEECC-cCHHHHHHHHHHHHHHHHhc--CCcEEEEEECC-------CC------------------HH-----
Confidence            478899999999 99765  4567999988876  34777777652       11                  01     


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                          +.+.|++.+.|+++++. +|+++.
T Consensus        76 ----l~~~~~v~~~Pt~~~~~-~G~~~~   98 (222)
T 3dxb_A           76 ----TAPKYGIRGIPTLLLFK-NGEVAA   98 (222)
T ss_dssp             ----TGGGGTCCSBSEEEEEE-TTEEEE
T ss_pred             ----HHHHcCCCcCCEEEEEE-CCeEEE
Confidence                23568999999999995 888764

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=95.23  E-value=0.07  Score=51.47  Aligned_cols=102  Identities=8%  Similarity=0.026  Sum_probs=65.9

Q ss_pred             CCcEEecccc-cCcEEEE-EEecCCCCChH---HHHHHHHHHHHhcCCCCe-eEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837          319 TRTTVQIHVL-KKKHVLL-LISRPDDISQE---EILFLSNMYKDLKESKEC-RIVWLPIVDGSIDRQQALDKFKNLQKRM  392 (658)
Q Consensus       319 ~~~kV~Is~L-~gK~VlL-yfSa~~~~~~~---~~~~L~~iY~~lk~~~~f-EIVwIpivD~s~~W~dde~~F~~~~~~M  392 (658)
                      +-+.|+++++ +||.|.| +|=+. |||.|   |++.+.+.|++++. .++ +||=||.++     -...+.|.+-. ..
T Consensus        35 ~~~~vsLsd~~~Gk~vVL~fyP~~-~tp~Ct~~El~~f~~~~~ef~~-~g~d~VigIS~D~-----~~~~~~f~~~~-~l  106 (176)
T 4f82_A           35 GPNACSVRDQVAGKRVVIFGLPGA-FTPTCSAQHVPGYVEHAEQLRA-AGIDEIWCVSVND-----AFVMGAWGRDL-HT  106 (176)
T ss_dssp             EEEEEEHHHHHTTCEEEEEEESCT-TCHHHHHTHHHHHHHHHHHHHH-TTCCEEEEEESSC-----HHHHHHHHHHT-TC
T ss_pred             CceEEeHHHHhCCCeEEEEEEcCC-CCCCCCHHHHHHHHHHHHHHHh-CCCCEEEEEeCCC-----HHHHHHHHHHh-CC
Confidence            4467999996 9997655 55566 99765   67789999999973 467 999999842     12666776533 22


Q ss_pred             C--ceeecCCCCCcHHHHHHHHHhhccC-----------CceEEEEECCCCceeccc
Q 046837          393 P--WYSIQDPAMIQPAVIKYVKEEWKYS-----------KKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       393 P--WyAVpf~~~i~~~~~r~ike~f~~~-----------~iP~LVvL~pqGkv~~~n  436 (658)
                      |  +.-+--++   .+..+.    |++.           ..|...|+ |+|+|....
T Consensus       107 ~~~f~lLsD~~---~~va~a----yGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~  155 (176)
T 4f82_A          107 AGKVRMMADGS---AAFTHA----LGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLA  155 (176)
T ss_dssp             TTTSEEEECTT---CHHHHH----HTCEEECGGGTCCEEECCEEEEE-ETTEEEEEE
T ss_pred             CCCceEEEcCc---hHHHHH----hCCCccccccCCCcccccEEEEE-cCCEEEEEE
Confidence            2  22222222   233333    5542           24778888 999997543

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=95.18  E-value=0.16  Score=51.94  Aligned_cols=73  Identities=10%  Similarity=-0.024  Sum_probs=50.6

Q ss_pred             CcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|+++|.|. ||++|  +.+.+.+++++++  +.+.++.|-++       .++                         
T Consensus        35 ~~~vlV~F~A~-wC~~C~~~~p~~~~la~~~~--~~~~~~~v~~d-------~~~-------------------------   79 (298)
T 3ed3_A           35 NYTSLVEFYAP-WCGHCKKLSSTFRKAAKRLD--GVVQVAAVNCD-------LNK-------------------------   79 (298)
T ss_dssp             SSCEEEEEECT-TCHHHHHHHHHHHHHHHHTT--TTSEEEEEETT-------STT-------------------------
T ss_pred             CCeEEEEEECC-CCHHHHHHHHHHHHHHHHcc--CCcEEEEEEcc-------Ccc-------------------------
Confidence            67899999999 99775  4667888888885  45888888862       111                         


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceeccch
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILNQNA  437 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~~nA  437 (658)
                      -+.+.+.|++++.|+++++++.+.+....+
T Consensus        80 ~~~l~~~~~I~~~Pt~~~~~~g~~v~~~~g  109 (298)
T 3ed3_A           80 NKALCAKYDVNGFPTLMVFRPPKIDLSKPI  109 (298)
T ss_dssp             THHHHHHTTCCBSSEEEEEECCCC------
T ss_pred             CHHHHHhCCCCccceEEEEECCceeecccc
Confidence            123456699999999999987554444333

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=95.13  E-value=0.028  Score=47.92  Aligned_cols=66  Identities=9%  Similarity=-0.031  Sum_probs=47.6

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcC---CCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKE---SKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI  403 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~---~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i  403 (658)
                      ++|.|+++|.+. ||++|  +.+.|.+++++++.   ..++.++.|-+.       +.           |         +
T Consensus        24 ~~~~vlv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~-------~~-----------~---------~   75 (121)
T 2djj_A           24 DTKDVLIEFYAP-WCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT-------AN-----------D---------V   75 (121)
T ss_dssp             TTSCEEEEEECS-SCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT-------TS-----------C---------C
T ss_pred             CCCCEEEEEECC-CCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECc-------cc-----------c---------c
Confidence            688999999999 99875  45678888888864   235666555541       11           0         0


Q ss_pred             cHHHHHHHHHhhccCCceEEEEECCCCce
Q 046837          404 QPAVIKYVKEEWKYSKKAIIVSVDPQGRI  432 (658)
Q Consensus       404 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv  432 (658)
                              .+  ++++.|+++++++.|++
T Consensus        76 --------~~--~v~~~Pt~~~~~~~~~~   94 (121)
T 2djj_A           76 --------PD--EIQGFPTIKLYPAGAKG   94 (121)
T ss_dssp             --------SS--CCSSSSEEEEECSSCTT
T ss_pred             --------cc--ccCcCCeEEEEeCcCCC
Confidence                    11  88999999999998883

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=94.96  E-value=0.074  Score=50.51  Aligned_cols=69  Identities=7%  Similarity=-0.014  Sum_probs=48.2

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcC--CCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCc
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKE--SKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQ  404 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~--~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~  404 (658)
                      .++.++++|.+. ||++|  +.+.|.+++++.+.  ++++.++.|.+       ++.                       
T Consensus       133 ~~~~~~v~F~a~-wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~-------~~~-----------------------  181 (226)
T 1a8l_A          133 DQDVRILVFVTP-TCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEA-------IEY-----------------------  181 (226)
T ss_dssp             CSCEEEEEEECS-SCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEG-------GGC-----------------------
T ss_pred             CCCcEEEEEeCC-CCCccHHHHHHHHHHHHhcccccCCcEEEEEEEc-------ccC-----------------------
Confidence            355569999999 99875  46678888888752  24666666654       111                       


Q ss_pred             HHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          405 PAVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       405 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                          ..+.+.|++++.|+++++ ++|+.+
T Consensus       182 ----~~l~~~~~v~~~Pt~~~~-~~G~~~  205 (226)
T 1a8l_A          182 ----PEWADQYNVMAVPKIVIQ-VNGEDR  205 (226)
T ss_dssp             ----HHHHHHTTCCSSCEEEEE-ETTEEE
T ss_pred             ----HHHHHhCCCcccCeEEEE-eCCcee
Confidence                124566999999998887 588765

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=94.82  E-value=0.43  Score=45.45  Aligned_cols=147  Identities=8%  Similarity=-0.052  Sum_probs=75.9

Q ss_pred             cCcEEEEEEe----cCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 046837          329 KKKHVLLLIS----RPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAM  402 (658)
Q Consensus       329 ~gK~VlLyfS----a~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~  402 (658)
                      ++..+..+|+    +. ||.++  ..+.+.+++++++..++..++.|=.        +                      
T Consensus        20 ~~~v~v~~~~~~~~~~-~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~--------~----------------------   68 (229)
T 2ywm_A           20 KEPVSIKLFSQAIGCE-SCQTAEELLKETVEVIGEAVGQDKIKLDIYSP--------F----------------------   68 (229)
T ss_dssp             CSCEEEEEECCCTTCG-GGGHHHHHHHHHHHHHHHHHCTTTEEEEEECT--------T----------------------
T ss_pred             cCCeEEEEEccCCCCc-ccHHHHHHHHHHHHHHhccCCCCceEEEEecC--------c----------------------
Confidence            3445666663    44 67653  4567888887775445555554432        1                      


Q ss_pred             CcHHHHHHHHHhhccCCceEEEEECCCCc-eeccchHHHHHHhCCccccCChhhHHHhhhcCCCchhhcccCCChh-hhh
Q 046837          403 IQPAVIKYVKEEWKYSKKAIIVSVDPQGR-ILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLELLVGDIDAT-ILE  480 (658)
Q Consensus       403 i~~~~~r~ike~f~~~~iP~LVvL~pqGk-v~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~e~w~le~Lv~~id~~-I~~  480 (658)
                          .-+.|.+.|++++.|++++++. |+ ...-+|..       .+-.|+.- ...+-..     ..-+..++.. ...
T Consensus        69 ----~~~~l~~~~~v~~~Ptl~~~~~-~~~~~~~~G~~-------~~~~l~~~-~~~~~~~-----~~~~~~l~~~~~~~  130 (229)
T 2ywm_A           69 ----THKEETEKYGVDRVPTIVIEGD-KDYGIRYIGLP-------AGLEFTTL-INGIFHV-----SQRKPQLSEKTLEL  130 (229)
T ss_dssp             ----TCHHHHHHTTCCBSSEEEEESS-SCCCEEEESCC-------CTTHHHHH-HHHHHHH-----HTTCCSCCHHHHHH
T ss_pred             ----ccHHHHHHcCCCcCcEEEEECC-CcccceecCCc-------cHHHHHHH-HHHHHhc-----cCCccCCCHHHHHH
Confidence                0123556799999999999963 33 22222210       01111000 0000000     0000122222 122


Q ss_pred             hhc-CCcEEEEEccCC-chHHHHHHHHHHHHHhhcCCceeEEEeecc
Q 046837          481 WMK-EERFICLYGGND-EAWIRKFRNSAKDVASKAQINWGMAYVGKK  525 (658)
Q Consensus       481 ~i~-egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkd  525 (658)
                      .+. .++.+.++|.+. -..|+++.+.+.+++++. ..+.++.|.-+
T Consensus       131 ~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~-~~v~~~~vd~~  176 (229)
T 2ywm_A          131 LQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAN-DYITSKVIDAS  176 (229)
T ss_dssp             HTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHC-TTEEEEEEEGG
T ss_pred             HHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHC-CCeEEEEEECC
Confidence            223 455657777773 255699999999998774 36666666655

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=94.74  E-value=0.065  Score=51.08  Aligned_cols=70  Identities=11%  Similarity=0.065  Sum_probs=51.9

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcC-CCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      .+|.|+++|.+. ||++|  +.+.+.++.++++. ..++.++.|-..       ++.                       
T Consensus       146 ~~~~~~v~f~a~-wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~-------~~~-----------------------  194 (241)
T 3idv_A          146 DADIILVEFYAP-WCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT-------AET-----------------------  194 (241)
T ss_dssp             HCSEEEEEEECT-TCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETT-------TCH-----------------------
T ss_pred             cCCeEEEEEECC-CCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECC-------CCH-----------------------
Confidence            468899999999 99876  45678999888864 355777776651       111                       


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                          .+.+.|++++.|+++++. +|+.+.
T Consensus       195 ----~l~~~~~v~~~Pt~~~~~-~g~~~~  218 (241)
T 3idv_A          195 ----DLAKRFDVSGYPTLKIFR-KGRPYD  218 (241)
T ss_dssp             ----HHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             ----HHHHHcCCcccCEEEEEE-CCeEEE
Confidence                156679999999999997 477653

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=94.67  E-value=0.061  Score=49.27  Aligned_cols=66  Identities=5%  Similarity=0.196  Sum_probs=41.0

Q ss_pred             CcEEEEEEecCCC--CChH--HHHHHHHHHHHhcCCCCee--EEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837          330 KKHVLLLISRPDD--ISQE--EILFLSNMYKDLKESKECR--IVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI  403 (658)
Q Consensus       330 gK~VlLyfSa~~~--~~~~--~~~~L~~iY~~lk~~~~fE--IVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i  403 (658)
                      .+.++++|++. |  |++|  ..+.|.+++++.   +++.  ++-|-+         ++                     
T Consensus        34 ~~~~vv~f~~~-~~~C~~C~~l~P~l~~la~~~---~~v~~~~~~Vd~---------d~---------------------   79 (142)
T 2es7_A           34 VGDGVILLSSD-PRRTPEVSDNPVMIAELLREF---PQFDWQVAVADL---------EQ---------------------   79 (142)
T ss_dssp             CCSEEEEECCC-SCC----CCHHHHHHHHHHTC---TTSCCEEEEECH---------HH---------------------
T ss_pred             CCCEEEEEECC-CCCCccHHHHHHHHHHHHHHh---cccceeEEEEEC---------CC---------------------
Confidence            34588889988 6  7665  567888888876   3455  555443         11                     


Q ss_pred             cHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          404 QPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       404 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                          -..+.+.|+++++|+++++ .+|+++.
T Consensus        80 ----~~~la~~~~V~~iPT~~~f-k~G~~v~  105 (142)
T 2es7_A           80 ----SEAIGDRFNVRRFPATLVF-TDGKLRG  105 (142)
T ss_dssp             ----HHHHHHTTTCCSSSEEEEE-SCC----
T ss_pred             ----CHHHHHhcCCCcCCeEEEE-eCCEEEE
Confidence                1125567999999999999 8998763

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=94.57  E-value=0.042  Score=43.69  Aligned_cols=62  Identities=13%  Similarity=0.276  Sum_probs=45.5

Q ss_pred             cEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHH
Q 046837          331 KHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVI  408 (658)
Q Consensus       331 K~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~  408 (658)
                      +.+.++|++. ||++  ...+.|.++.++.+  ++++++.|.+.+       +                  ++       
T Consensus         3 ~~~vv~f~~~-~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~-------~------------------~~-------   47 (85)
T 1fo5_A            3 KVKIELFTSP-MCPHCPAAKRVVEEVANEMP--DAVEVEYINVME-------N------------------PQ-------   47 (85)
T ss_dssp             CEEEEEEECC-CSSCCCTHHHHHHHHHHHCS--SSEEEEEEESSS-------S------------------CC-------
T ss_pred             ceEEEEEeCC-CCCchHHHHHHHHHHHHHcC--CceEEEEEECCC-------C------------------HH-------
Confidence            4578899999 9976  45677888888775  568888877621       1                  01       


Q ss_pred             HHHHHhhccCCceEEEEECCCCce
Q 046837          409 KYVKEEWKYSKKAIIVSVDPQGRI  432 (658)
Q Consensus       409 r~ike~f~~~~iP~LVvL~pqGkv  432 (658)
                        +.+.|++++.|++++   +|++
T Consensus        48 --~~~~~~v~~~Pt~~~---~G~~   66 (85)
T 1fo5_A           48 --KAMEYGIMAVPTIVI---NGDV   66 (85)
T ss_dssp             --TTTSTTTCCSSEEEE---TTEE
T ss_pred             --HHHHCCCcccCEEEE---CCEE
Confidence              235589999999999   8886

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=94.39  E-value=0.0094  Score=51.44  Aligned_cols=67  Identities=10%  Similarity=0.080  Sum_probs=47.3

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|  ..+.|.+++++.+   ++.++.|.+.       +.                         
T Consensus        35 ~~~~~vv~f~~~-~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~-------~~-------------------------   78 (130)
T 1wmj_A           35 AGKVVIIDFTAS-WCGPCRFIAPVFAEYAKKFP---GAVFLKVDVD-------EL-------------------------   78 (130)
T ss_dssp             TTCBCBEECCSS-SCSCSSSSHHHHHHHHHHCT---TBCCEECCTT-------TS-------------------------
T ss_pred             cCCEEEEEEECC-CChhHHHHHHHHHHHHHHCC---CCEEEEEecc-------ch-------------------------
Confidence            488999999999 99764  5677888887764   4555544431       11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ..+.+.|++++.|+++++ ++|+++.
T Consensus        79 --~~~~~~~~v~~~Pt~~~~-~~g~~~~  103 (130)
T 1wmj_A           79 --KEVAEKYNVEAMPTFLFI-KDGAEAD  103 (130)
T ss_dssp             --GGGHHHHTCCSSCCCCBC-TTTTCCB
T ss_pred             --HHHHHHcCCCccceEEEE-eCCeEEE
Confidence              113456899999998887 8998764

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=94.17  E-value=0.072  Score=46.45  Aligned_cols=77  Identities=8%  Similarity=0.203  Sum_probs=50.7

Q ss_pred             cCcEEEEEEecCC------CCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCC
Q 046837          329 KKKHVLLLISRPD------DISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDP  400 (658)
Q Consensus       329 ~gK~VlLyfSa~~------~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~  400 (658)
                      +||.|+++|.+..      ||++|  ..+.|.+++++++  +++.++.|.+.       +. ..         |.   - 
T Consensus        23 ~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~--~~~~~~~vd~~-------~~-~~---------~~---d-   79 (123)
T 1wou_A           23 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS--EGCVFIYCQVG-------EK-PY---------WK---D-   79 (123)
T ss_dssp             TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCC--TTEEEEEEECC-------CH-HH---------HH---C-
T ss_pred             CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcC--CCcEEEEEECC-------Cc-hh---------hh---c-
Confidence            4889999999863      89775  4567888877664  36777777662       11 11         21   0 


Q ss_pred             CCCcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          401 AMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       401 ~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                      .  ..    .+.+.|+++++|+++++++.+++..
T Consensus        80 ~--~~----~~~~~~~i~~~Pt~~~~~~~~~~~g  107 (123)
T 1wou_A           80 P--NN----DFRKNLKVTAVPTLLKYGTPQKLVE  107 (123)
T ss_dssp             T--TC----HHHHHHCCCSSSEEEETTSSCEEEG
T ss_pred             h--hH----HHHHHCCCCeeCEEEEEcCCceEec
Confidence            1  11    2445599999999999998555553

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=94.12  E-value=0.056  Score=42.93  Aligned_cols=60  Identities=12%  Similarity=0.114  Sum_probs=44.2

Q ss_pred             EEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHHHH
Q 046837          333 VLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKY  410 (658)
Q Consensus       333 VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~r~  410 (658)
                      +.++|++. ||++|  ..+.|.++.++..  ++++++.|.+.       ++.                           .
T Consensus         4 ~vv~f~~~-~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~-------~~~---------------------------~   46 (85)
T 1nho_A            4 NIEVFTSP-TCPYCPMAIEVVDEAKKEFG--DKIDVEKIDIM-------VDR---------------------------E   46 (85)
T ss_dssp             CEEEESCS-SSCCSTTHHHHHHHHHHHHC--SSCCEEEECTT-------TCG---------------------------G
T ss_pred             EEEEEECC-CCcchHHHHHHHHHHHHHhc--CCeEEEEEECC-------CCH---------------------------H
Confidence            57889999 99764  5667888888775  46888887762       111                           1


Q ss_pred             HHHhhccCCceEEEEECCCCce
Q 046837          411 VKEEWKYSKKAIIVSVDPQGRI  432 (658)
Q Consensus       411 ike~f~~~~iP~LVvL~pqGkv  432 (658)
                      +.+.|++++.|++++   +|++
T Consensus        47 ~~~~~~v~~~Pt~~~---~G~~   65 (85)
T 1nho_A           47 KAIEYGLMAVPAIAI---NGVV   65 (85)
T ss_dssp             GGGGTCSSCSSEEEE---TTTE
T ss_pred             HHHhCCceeeCEEEE---CCEE
Confidence            335689999999999   8886

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=94.02  E-value=0.058  Score=57.63  Aligned_cols=66  Identities=12%  Similarity=0.040  Sum_probs=48.7

Q ss_pred             CcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ||.|+++|.|. ||++|  ..+.|.+++++++...++.++.|-.       ++.         .                
T Consensus       370 ~k~vlv~f~a~-wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~-------~~~---------~----------------  416 (481)
T 3f8u_A          370 NKDVLIEFYAP-WCGHCKNLEPKYKELGEKLSKDPNIVIAKMDA-------TAN---------D----------------  416 (481)
T ss_dssp             TCEEEEEEECT-TBHHHHHHHHHHHHHHHHTTTCSSEEEEEEET-------TSS---------C----------------
T ss_pred             CCcEEEEEecC-cChhHHHhhHHHHHHHHHhccCCCEEEEEEEC-------Cch---------h----------------
Confidence            89999999999 99775  5678999999887555555554443       111         0                


Q ss_pred             HHHHHHhhccCCceEEEEECCCCc
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGR  431 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGk  431 (658)
                         +.+.|++++.|+++++++.|+
T Consensus       417 ---~~~~~~v~~~Pt~~~~~~~~~  437 (481)
T 3f8u_A          417 ---VPSPYEVRGFPTIYFSPANKK  437 (481)
T ss_dssp             ---CCTTCCCCSSSEEEEECTTCT
T ss_pred             ---hHhhCCCcccCEEEEEeCCCe
Confidence               113589999999999998887

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=93.06  E-value=0.0096  Score=48.83  Aligned_cols=68  Identities=10%  Similarity=0.210  Sum_probs=45.0

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      .+|.|+++|.+. ||+.|.  .+.|.++.++.+  +++.++.|.+       +++                         
T Consensus        18 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~-------~~~-------------------------   62 (106)
T 2yj7_A           18 SDKPVLVDFWAP-WCGPCRMIAPIIEELAKEYE--GKVKVVKVNV-------DEN-------------------------   62 (106)
Confidence            378899999999 998754  445766666654  2344444433       111                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        ..+.+.|++++.|+++++ ++|+++.
T Consensus        63 --~~~~~~~~v~~~Pt~~~~-~~g~~~~   87 (106)
T 2yj7_A           63 --PNTAAQYGIRSIPTLLLF-KNGQVVD   87 (106)
Confidence              113455889999999999 8898753

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=93.98  E-value=0.1  Score=57.86  Aligned_cols=70  Identities=9%  Similarity=-0.017  Sum_probs=53.3

Q ss_pred             CcEEEEEEecCCCCCh--HHHHHHHHHHHHhcC-CCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          330 KKHVLLLISRPDDISQ--EEILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ||.|+++|.|. ||++  .+.+.+.+++++++. +..+.++-|-+.       +++                        
T Consensus        30 ~k~vlV~FyA~-WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d-------~d~------------------------   77 (519)
T 3t58_A           30 SSAWAVEFFAS-WCGHAIAFAPTWKELANDVKDWRPALNLAVLDCA-------EET------------------------   77 (519)
T ss_dssp             SSEEEEEEECT-TSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETT-------SGG------------------------
T ss_pred             CCeEEEEEECC-CCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECC-------ccc------------------------
Confidence            58999999999 9976  457789999999875 357888877762       111                        


Q ss_pred             HHHHHHHhhccCCceEEEEECC---CCce
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDP---QGRI  432 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~p---qGkv  432 (658)
                       -+.+.+.|++++.|+++++++   +|+.
T Consensus        78 -~~~l~~~~~V~~~PTl~~f~~g~~~G~~  105 (519)
T 3t58_A           78 -NSAVCREFNIAGFPTVRFFQAFTKNGSG  105 (519)
T ss_dssp             -GHHHHHHTTCCSBSEEEEECTTCCSCCC
T ss_pred             -cHHHHHHcCCcccCEEEEEcCcccCCCc
Confidence             123556799999999999998   6653

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=93.97  E-value=0.47  Score=54.02  Aligned_cols=145  Identities=8%  Similarity=-0.134  Sum_probs=83.7

Q ss_pred             CcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ++.++++|.+. ||++|  ..+.+.++.++++  ++  |++..++.       ++                         
T Consensus       563 ~~~~lv~F~ap-~C~~c~~~~p~~~~lA~~~~--~~--v~~~~vd~-------~~-------------------------  605 (780)
T 3apo_A          563 DEVWMVDFYSP-WSHPSQVLMPEWKRMARTLT--GL--INVGSVDC-------GQ-------------------------  605 (780)
T ss_dssp             TCCEEEEEECT-TCHHHHHHHHHHHHHHHHHT--TT--SEEEEEET-------TT-------------------------
T ss_pred             CCeEEEEEECC-CCHHHHHhhHHHHHHHHHhh--CC--eEEEEEEC-------cc-------------------------
Confidence            35689999999 99775  3456777777766  34  44444411       10                         


Q ss_pred             HHHHHHhhccCCceEEEEECCCCc----eeccchHHHHHHhCCccccCChhhHHHhhhcCCCchhhcccCCCh-hhhh-h
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGR----ILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLELLVGDIDA-TILE-W  481 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGk----v~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~e~w~le~Lv~~id~-~I~~-~  481 (658)
                      -+.+.+.|++++.|++++..+.++    .+.-           ++.+++.+.+.+.-++..  ...+ ..++. ...+ .
T Consensus       606 ~~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~y-----------~g~~~~~~~l~~fi~~~~--~~~v-~~l~~~~~~~~~  671 (780)
T 3apo_A          606 YHSFCTQENVQRYPEIRFYPQKSSKAYQYHSY-----------NGWNRDAYSLRSWGLGFL--PQAS-IDLTPQTFNEKV  671 (780)
T ss_dssp             THHHHHHTTCCSSSEEEEECCCSSSCCSCEEC-----------CCSCCSHHHHHHHHHTTS--CCCS-EEECHHHHHHHT
T ss_pred             hHHHHHHcCCCCCCeEEEEcCCCcCccchhhc-----------CCCCCCHHHHHHHHhhhc--cccc-ccCCHHHHHHHH
Confidence            012445699999999999987543    1211           112334333333222211  0111 11222 2222 2


Q ss_pred             hcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeecc
Q 046837          482 MKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKK  525 (658)
Q Consensus       482 i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkd  525 (658)
                      ...||.+.++|.+.+ ..|+++.+.+.+++++.+..+.++.|..+
T Consensus       672 ~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~  716 (780)
T 3apo_A          672 LQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQ  716 (780)
T ss_dssp             TTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred             hcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence            347899999999832 44699999999998875446666666554

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=93.30  E-value=0.15  Score=47.80  Aligned_cols=70  Identities=11%  Similarity=0.127  Sum_probs=43.7

Q ss_pred             CcEEEEEEecCCCCChHHHH-----HHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCc
Q 046837          330 KKHVLLLISRPDDISQEEIL-----FLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQ  404 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~~~-----~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~  404 (658)
                      ||.|+|+|.+. ||..|...     .=.++-+-++  ++|  |+|-+ |.    ++                        
T Consensus        42 ~K~vlvd~~a~-wC~~C~~me~~vf~d~~V~~~l~--~~f--v~v~~-d~----~~------------------------   87 (153)
T 2dlx_A           42 NKWLMINIQNV-QDFACQCLNRDVWSNEAVKNIIR--EHF--IFWQV-YH----DS------------------------   87 (153)
T ss_dssp             TCEEEEEEECS-CTTTHHHHHHHTTTCHHHHHHHH--HTE--EEEEE-ES----SS------------------------
T ss_pred             CCeEEEEEECC-CCHhHHHHHHHhcCCHHHHHHHH--cCe--EEEEE-ec----CC------------------------
Confidence            89999999999 99875432     1122333332  234  44444 21    11                        


Q ss_pred             HHHHHHHHHhhccCCceEEEEECCC-Cceec
Q 046837          405 PAVIKYVKEEWKYSKKAIIVSVDPQ-GRILN  434 (658)
Q Consensus       405 ~~~~r~ike~f~~~~iP~LVvL~pq-Gkv~~  434 (658)
                      .+ -+.+.+.|++.+.|+++++||+ |+.+.
T Consensus        88 ~~-~~~l~~~y~v~~~P~~~fld~~~G~~l~  117 (153)
T 2dlx_A           88 EE-GQRYIQFYKLGDFPYVSILDPRTGQKLV  117 (153)
T ss_dssp             HH-HHHHHHHHTCCSSSEEEEECTTTCCCCE
T ss_pred             Hh-HHHHHHHcCCCCCCEEEEEeCCCCcEee
Confidence            11 1234467999999999999999 87764

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=93.07  E-value=0.068  Score=52.41  Aligned_cols=87  Identities=8%  Similarity=0.104  Sum_probs=52.5

Q ss_pred             CcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ||.|+++|.+. ||++|..  +.|.++.++.   .+  |.|+.+ |      -+ .  .                     
T Consensus       120 ~k~vvV~F~a~-wC~~C~~l~p~l~~la~~~---~~--v~f~~v-d------~~-~--~---------------------  162 (217)
T 2trc_P          120 VTTIVVNIYED-GVRGCDALNSSLECLAAEY---PM--VKFCKI-R------AS-N--T---------------------  162 (217)
T ss_dssp             TCEEEEEEECT-TSTTHHHHHHHHHHHHTTC---TT--SEEEEE-E------HH-H--H---------------------
T ss_pred             CcEEEEEEECC-CCccHHHHHHHHHHHHHHC---CC--eEEEEE-E------CC-c--H---------------------
Confidence            58999999999 9988764  3455555443   34  445554 1      02 1  0                     


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHHhh
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALW  460 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~  460 (658)
                        .+.+.|++++.|+++++. +|+++.. -.+.....|   --|+.+.++.+-
T Consensus       163 --~l~~~~~i~~~PTl~~~~-~G~~v~~-~~G~~~~~g---~~~~~~~Le~~L  208 (217)
T 2trc_P          163 --GAGDRFSSDVLPTLLVYK-GGELISN-FISVAEQFA---EDFFAADVESFL  208 (217)
T ss_dssp             --TCSTTSCGGGCSEEEEEE-TTEEEEE-ETTGGGGSC---SSCCHHHHHHHH
T ss_pred             --HHHHHCCCCCCCEEEEEE-CCEEEEE-EeCCcccCc---ccCCHHHHHHHH
Confidence              022358999999999995 8988642 223222233   236666665554

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=92.93  E-value=0.34  Score=45.07  Aligned_cols=69  Identities=9%  Similarity=0.109  Sum_probs=48.1

Q ss_pred             cCc-EEEEEEecCCCC--ChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837          329 KKK-HVLLLISRPDDI--SQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI  403 (658)
Q Consensus       329 ~gK-~VlLyfSa~~~~--~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i  403 (658)
                      .++ .|++.|.|. ||  +||.  .++|.++=++..  +++.|+-|=+ |      +                       
T Consensus        31 ~~~~~vlVdF~A~-wCr~gpCk~iaPvleela~e~~--~~v~~~KVdv-D------e-----------------------   77 (137)
T 2qsi_A           31 HSGKIVVLFFRGD-AVRFPEAADLAVVLPELINAFP--GRLVAAEVAA-E------A-----------------------   77 (137)
T ss_dssp             TSSSEEEEEECCC-TTTCTTHHHHHHHHHHHHHTST--TTEEEEEECG-G------G-----------------------
T ss_pred             cCCCcEEEEEeCC-ccCCCchhhHHhHHHHHHHHcc--CCcEEEEEEC-C------C-----------------------
Confidence            344 899999999 99  7765  345666655542  5677777664 1      1                       


Q ss_pred             cHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          404 QPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       404 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                          -+.|..+|+++++|+|+++ .+|+++..
T Consensus        78 ----~~~la~~ygV~siPTlilF-kdG~~v~~  104 (137)
T 2qsi_A           78 ----ERGLMARFGVAVCPSLAVV-QPERTLGV  104 (137)
T ss_dssp             ----HHHHHHHHTCCSSSEEEEE-ECCEEEEE
T ss_pred             ----CHHHHHHcCCccCCEEEEE-ECCEEEEE
Confidence                1234556999999999999 57877643

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=92.27  E-value=0.14  Score=51.61  Aligned_cols=90  Identities=11%  Similarity=0.104  Sum_probs=55.3

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      +||.|+++|.+. ||++|.  .+.|.+++++..   +  |.|+-+ |      -++   ..                   
T Consensus       132 ~~k~VvV~Fya~-wC~~Ck~l~p~l~~La~~~~---~--v~f~kV-d------~d~---~~-------------------  176 (245)
T 1a0r_P          132 KITTIVVHIYED-GIKGCDALNSSLICLAAEYP---M--VKFCKI-K------ASN---TG-------------------  176 (245)
T ss_dssp             TTCEEEEEEECT-TSTTHHHHHHHHHHHHHHCT---T--SEEEEE-E------HHH---HC-------------------
T ss_pred             CCCEEEEEEECC-CChHHHHHHHHHHHHHHHCC---C--CEEEEE-e------CCc---HH-------------------
Confidence            388999999999 998875  456877777653   3  555555 1      121   10                   


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHHhhhc
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKE  462 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~  462 (658)
                          +.+.|+++++|+++++. +|+++.. -.+.....|.   -|+.+.++.+-.+
T Consensus       177 ----l~~~~~I~~~PTll~~~-~G~~v~~-~vG~~~~~g~---~~~~e~Le~~L~~  223 (245)
T 1a0r_P          177 ----AGDRFSSDVLPTLLVYK-GGELLSN-FISVTEQLAE---EFFTGDVESFLNE  223 (245)
T ss_dssp             ----CTTSSCTTTCSEEEEEE-TTEEEEE-ETTGGGGSCT---TCCHHHHHHHHHT
T ss_pred             ----HHHHCCCCCCCEEEEEE-CCEEEEE-EeCCcccccc---cccHHHHHHHHHH
Confidence                12358999999999886 8988642 2222211121   2566665555443

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=91.99  E-value=0.4  Score=47.25  Aligned_cols=69  Identities=12%  Similarity=0.082  Sum_probs=47.0

Q ss_pred             cccCcEEEEEEecCCCCChH--HHHHHHHHHHHhc--CCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 046837          327 VLKKKHVLLLISRPDDISQE--EILFLSNMYKDLK--ESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAM  402 (658)
Q Consensus       327 ~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk--~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~  402 (658)
                      .++|+.+.+.|.+. ||++|  ..+.|.+++.+.+  .+.++.++-|-+       ++.                     
T Consensus       135 ~~~~~~~vv~F~a~-wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~-------~~~---------------------  185 (243)
T 2hls_A          135 SLKGRVHIETIITP-SCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEA-------YEN---------------------  185 (243)
T ss_dssp             HCCSCEEEEEEECS-SCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEET-------TTC---------------------
T ss_pred             HcCCCcEEEEEECC-CCCCcHHHHHHHHHHHHHcccccCCcEEEEEEEC-------ccC---------------------
Confidence            46788889999999 99876  4567888777763  224555554433       111                     


Q ss_pred             CcHHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          403 IQPAVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       403 i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                        .    .+.+.|++++.|++++   +|+++
T Consensus       186 --~----~~~~~~~V~~vPt~~i---~G~~~  207 (243)
T 2hls_A          186 --P----DIADKYGVMSVPSIAI---NGYLV  207 (243)
T ss_dssp             --H----HHHHHTTCCSSSEEEE---TTEEE
T ss_pred             --H----HHHHHcCCeeeCeEEE---CCEEE
Confidence              1    2445699999999998   78764

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=91.87  E-value=0.36  Score=46.01  Aligned_cols=62  Identities=5%  Similarity=-0.053  Sum_probs=43.1

Q ss_pred             CcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ++.++++|.+. ||++|  ..+.|.++.++.   +++.++.|-+.       ++                          
T Consensus       136 ~~~~~v~F~a~-wC~~C~~~~~~~~~~~~~~---~~v~~~~vd~~-------~~--------------------------  178 (229)
T 2ywm_A          136 IPIEIWVFVTT-SCGYCPSAAVMAWDFALAN---DYITSKVIDAS-------EN--------------------------  178 (229)
T ss_dssp             SCEEEEEEECT-TCTTHHHHHHHHHHHHHHC---TTEEEEEEEGG-------GC--------------------------
T ss_pred             CCeEEEEEECC-CCcchHHHHHHHHHHHHHC---CCeEEEEEECC-------CC--------------------------
Confidence            55668889999 99875  456677777765   35666665541       11                          


Q ss_pred             HHHHHHhhccCCceEEEEECCCCce
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRI  432 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv  432 (658)
                       ..+.+.|++++.|++++   +|++
T Consensus       179 -~~l~~~~~v~~~Pt~~~---~G~~  199 (229)
T 2ywm_A          179 -QDLAEQFQVVGVPKIVI---NKGV  199 (229)
T ss_dssp             -HHHHHHTTCCSSSEEEE---GGGT
T ss_pred             -HHHHHHcCCcccCEEEE---CCEE
Confidence             12456699999999999   7774

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=91.36  E-value=0.38  Score=44.88  Aligned_cols=68  Identities=7%  Similarity=0.051  Sum_probs=43.6

Q ss_pred             cCcEEEEEEecCCC--CChHHHHHHHHHHHHhcCC--CC-eeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837          329 KKKHVLLLISRPDD--ISQEEILFLSNMYKDLKES--KE-CRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI  403 (658)
Q Consensus       329 ~gK~VlLyfSa~~~--~~~~~~~~L~~iY~~lk~~--~~-fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i  403 (658)
                      .++.|+++|.+. |  |++|.  .+..+.+++.++  ++ +.|+-|=+        | +                     
T Consensus        33 ~~~~vlVdF~a~-~crCgpCk--~iaPvleela~e~~g~~v~~~KVdv--------D-e---------------------   79 (140)
T 2qgv_A           33 QAPDGVVLLSSD-PKRTPEVS--DNPVMIGELLHEFPDYTWQVAIADL--------E-Q---------------------   79 (140)
T ss_dssp             TCSSEEEEECCC-TTTCTTTT--HHHHHHHHHHTTCTTSCCEEEECCH--------H-H---------------------
T ss_pred             CCCCEEEEEeCC-cccCCcHH--HHHhHHHHHHHHcCCCeEEEEEEEC--------C-C---------------------
Confidence            456689999999 8  76663  234444444322  44 66665443        1 1                     


Q ss_pred             cHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          404 QPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       404 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                          -..|..+|+++++|+|+++ .+|+++.
T Consensus        80 ----~~~lA~~ygV~sIPTlilF-k~G~~v~  105 (140)
T 2qgv_A           80 ----SEAIGDRFGAFRFPATLVF-TGGNYRG  105 (140)
T ss_dssp             ----HHHHHHHHTCCSSSEEEEE-ETTEEEE
T ss_pred             ----CHHHHHHcCCccCCEEEEE-ECCEEEE
Confidence                2235566999999999999 5787764

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=90.81  E-value=0.62  Score=42.05  Aligned_cols=70  Identities=10%  Similarity=0.150  Sum_probs=51.5

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|+++|.+. ||+++.  .+.+.+..++    ++..++.|=+ |      +                       .+++
T Consensus        24 ~~~vvi~khat-wCgpc~~~~~~~e~~~~~----~~v~~~~vdV-d------e-----------------------~r~~   68 (112)
T 3iv4_A           24 NKYVFVLKHSE-TCPISANAYDQFNKFLYE----RDMDGYYLIV-Q------Q-----------------------ERDL   68 (112)
T ss_dssp             CSEEEEEEECT-TCHHHHHHHHHHHHHHHH----HTCCEEEEEG-G------G-----------------------GHHH
T ss_pred             CCCEEEEEECC-cCHhHHHHHHHHHHHhcc----CCceEEEEEe-e------c-----------------------Cchh
Confidence            78999999999 999875  3456666652    4566776654 2      1                       2355


Q ss_pred             HHHHHHhhccCC-ceEEEEECCCCceecc
Q 046837          408 IKYVKEEWKYSK-KAIIVSVDPQGRILNQ  435 (658)
Q Consensus       408 ~r~ike~f~~~~-iP~LVvL~pqGkv~~~  435 (658)
                      -..|.++|++++ .|+++++ .+|+++-.
T Consensus        69 Sn~IA~~~~V~h~sPq~il~-k~G~~v~~   96 (112)
T 3iv4_A           69 SDYIAKKTNVKHESPQAFYF-VNGEMVWN   96 (112)
T ss_dssp             HHHHHHHHTCCCCSSEEEEE-ETTEEEEE
T ss_pred             hHHHHHHhCCccCCCeEEEE-ECCEEEEE
Confidence            678899999995 9999999 68887643

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=90.65  E-value=0.017  Score=52.29  Aligned_cols=73  Identities=16%  Similarity=0.154  Sum_probs=46.0

Q ss_pred             ccCcEEEEEEecCCCCChHHHH--HHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          328 LKKKHVLLLISRPDDISQEEIL--FLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~~~~--~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      -+.+.++++|.+. ||++|...  .+.+.|....+...+.++.|-+.+       +.          |      ++    
T Consensus        16 ~~~~~~LV~F~A~-wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~-------~~----------~------~~----   67 (116)
T 3dml_A           16 DKAELRLLMFEQP-GCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRD-------PL----------P------PG----   67 (116)
T ss_dssp             ---CEEEEEEECT-TCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTS-------CC----------C------TT----
T ss_pred             ccCCCEEEEEECC-CCHHHHHHHHHHHhhHHHhhhcccceEEEEECCC-------CC----------c------hh----
Confidence            3457899999999 99987654  233444432222347788877622       10          0      11    


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                           +...+++.++|+||+++ +|+.+.
T Consensus        68 -----la~~~~V~g~PT~i~f~-~G~ev~   90 (116)
T 3dml_A           68 -----LELARPVTFTPTFVLMA-GDVESG   90 (116)
T ss_dssp             -----CBCSSCCCSSSEEEEEE-TTEEEE
T ss_pred             -----HHHHCCCCCCCEEEEEE-CCEEEe
Confidence                 11347889999999999 998775

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=90.56  E-value=0.41  Score=48.98  Aligned_cols=64  Identities=13%  Similarity=0.031  Sum_probs=45.2

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      .+|.|+++|.+. ||++|  ..+.|.++.++++.+.++.++.|-.       +...                        
T Consensus       266 ~~k~~lv~f~a~-wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~-------~~~~------------------------  313 (361)
T 3uem_A          266 EKKNVFVEFYAP-WCGHCKQLAPIWDKLGETYKDHENIVIAKMDS-------TANE------------------------  313 (361)
T ss_dssp             TTCEEEEEEECT-TCHHHHHHHHHHHHHHHHTTTCSSEEEEEEET-------TTCB------------------------
T ss_pred             CCCcEEEEEecC-cCHhHHHHHHHHHHHHHHhccCCcEEEEEEEC-------Cccc------------------------
Confidence            589999999999 99765  5677888888887555444444332       1110                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCC
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQ  429 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pq  429 (658)
                           .+.|++++.|+++++.+.
T Consensus       314 -----~~~~~v~~~Pt~~~~~~~  331 (361)
T 3uem_A          314 -----VEAVKVHSFPTLKFFPAS  331 (361)
T ss_dssp             -----CSSCCCCSSSEEEEECSS
T ss_pred             -----hhhcCCcccCeEEEEECC
Confidence                 123789999999999765

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=90.32  E-value=0.45  Score=41.46  Aligned_cols=61  Identities=10%  Similarity=0.129  Sum_probs=45.7

Q ss_pred             ChhhhhhhcCCcEEEEEccCC-chHHHHHHHHHHHHHhhcC--CceeEEEeeccChhhHHHHhhcc
Q 046837          475 DATILEWMKEERFICLYGGND-EAWIRKFRNSAKDVASKAQ--INWGMAYVGKKNAKKRLEEISSS  537 (658)
Q Consensus       475 d~~I~~~i~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~--~~~E~v~Vgkdn~~e~v~~~~~~  537 (658)
                      ...+.+.  .||.+.|||.+. -..|+.+.+.+.+++++.+  ..++++.|+.|...+.+++..+.
T Consensus        20 ~~~l~~~--~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~   83 (144)
T 1o73_A           20 EVSLGSL--VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGK   83 (144)
T ss_dssp             CBCSGGG--TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTT
T ss_pred             cCcHHHh--CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHh
Confidence            4444554  799999999984 2445888899988877643  58999999999877777766543

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=90.04  E-value=0.38  Score=42.32  Aligned_cols=61  Identities=8%  Similarity=0.123  Sum_probs=45.9

Q ss_pred             ChhhhhhhcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcC--CceeEEEeeccChhhHHHHhhcc
Q 046837          475 DATILEWMKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQ--INWGMAYVGKKNAKKRLEEISSS  537 (658)
Q Consensus       475 d~~I~~~i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~--~~~E~v~Vgkdn~~e~v~~~~~~  537 (658)
                      ...+++.  .||.+.|||.+.+ ..|+++.+.+.+++++.+  ..+++++|+.|...+.+++..+.
T Consensus        20 ~~~l~~~--~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~   83 (146)
T 1o8x_A           20 EVEVKSL--AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAK   83 (146)
T ss_dssp             EEEGGGG--TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTT
T ss_pred             CCcHHHh--CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHH
Confidence            3344443  7999999999842 445899999999877644  58999999999777777766644

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=89.34  E-value=0.48  Score=41.49  Aligned_cols=54  Identities=9%  Similarity=0.111  Sum_probs=42.9

Q ss_pred             CCcEEEEEccCCc-hHHHHHHHHHHHHHhhcC--CceeEEEeeccChhhHHHHhhcc
Q 046837          484 EERFICLYGGNDE-AWIRKFRNSAKDVASKAQ--INWGMAYVGKKNAKKRLEEISSS  537 (658)
Q Consensus       484 egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~--~~~E~v~Vgkdn~~e~v~~~~~~  537 (658)
                      .||.+.|||.+.+ ..|+++.+.+.+++++.+  ..++++.|+.|...+.+++..+.
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~   83 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAK   83 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHh
Confidence            7999999999942 445889999999877644  58999999999777777776644

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=89.06  E-value=0.82  Score=38.74  Aligned_cols=24  Identities=4%  Similarity=-0.047  Sum_probs=18.4

Q ss_pred             HHHHHHhhccCCceEEEEECCCCceec
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                      ...+.+.|++.+.|++ ++  +|+.+.
T Consensus        62 ~~~l~~~~~v~~~Pt~-~~--~g~~v~   85 (116)
T 2e7p_A           62 QSALAHWTGRGTVPNV-FI--GGKQIG   85 (116)
T ss_dssp             HHHHHHHHSCCSSCEE-EE--TTEEEE
T ss_pred             HHHHHHHhCCCCcCEE-EE--CCEEEC
Confidence            4567778999999999 44  687764

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=88.85  E-value=0.67  Score=51.11  Aligned_cols=67  Identities=7%  Similarity=-0.048  Sum_probs=47.1

Q ss_pred             CcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCC------CeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCC
Q 046837          330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKESK------ECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPA  401 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~------~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~  401 (658)
                      +|.|+++|.|. ||++|  +.+.+.+++++++...      ++.++=|-+       ++.                    
T Consensus        42 ~k~VlV~FyA~-WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~-------d~~--------------------   93 (470)
T 3qcp_A           42 LCPWIVLFYND-GCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNC-------ASE--------------------   93 (470)
T ss_dssp             GSCEEEEEECT-TCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEET-------TTC--------------------
T ss_pred             CCeEEEEEECC-CCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEEC-------CCC--------------------
Confidence            47899999999 99775  5677999998876431      344444333       111                    


Q ss_pred             CCcHHHHHHHHHhhccCCceEEEEECCCCc
Q 046837          402 MIQPAVIKYVKEEWKYSKKAIIVSVDPQGR  431 (658)
Q Consensus       402 ~i~~~~~r~ike~f~~~~iP~LVvL~pqGk  431 (658)
                             +.+.+.|++++.|+++++++.|.
T Consensus        94 -------~~la~~y~V~~~PTlilf~~gg~  116 (470)
T 3qcp_A           94 -------VDLCRKYDINFVPRLFFFYPRDS  116 (470)
T ss_dssp             -------HHHHHHTTCCSSCEEEEEEESSC
T ss_pred             -------HHHHHHcCCCccCeEEEEECCCc
Confidence                   13456699999999999987664

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=88.83  E-value=1.4  Score=34.15  Aligned_cols=59  Identities=10%  Similarity=-0.054  Sum_probs=39.6

Q ss_pred             EEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHHHHH
Q 046837          334 LLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKYV  411 (658)
Q Consensus       334 lLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~r~i  411 (658)
                      -+.|.+. ||++|.  .+.|.++.+++.  .++++  +.+         +                   +   .    .+
T Consensus         3 ~v~f~a~-wC~~C~~~~~~l~~~~~~~~--~~~~~--~~v---------~-------------------~---~----~~   42 (77)
T 1ilo_A            3 KIQIYGT-GCANCQMLEKNAREAVKELG--IDAEF--EKI---------K-------------------E---M----DQ   42 (77)
T ss_dssp             EEEEECS-SSSTTHHHHHHHHHHHHHTT--CCEEE--EEE---------C-------------------S---H----HH
T ss_pred             EEEEEcC-CChhHHHHHHHHHHHHHHcC--CceEE--EEe---------c-------------------C---H----HH
Confidence            3677788 997654  566888877764  34444  444         1                   1   1    23


Q ss_pred             HHhhccCCceEEEEECCCCceecc
Q 046837          412 KEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       412 ke~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      .+.|++++.|++++   +|+++..
T Consensus        43 ~~~~~v~~~Pt~~~---~G~~~~~   63 (77)
T 1ilo_A           43 ILEAGLTALPGLAV---DGELKIM   63 (77)
T ss_dssp             HHHHTCSSSSCEEE---TTEEEEC
T ss_pred             HHHCCCCcCCEEEE---CCEEEEc
Confidence            45689999999999   8988654

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=88.81  E-value=0.35  Score=51.60  Aligned_cols=65  Identities=12%  Similarity=0.002  Sum_probs=45.8

Q ss_pred             CcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      |+.|+++|.+. ||++|  ..+.+.++.++++..    |.++.+ |-     ++                          
T Consensus        21 ~~~~lv~F~a~-wC~~C~~~~p~~~~~a~~~~~~----v~~~~v-d~-----~~--------------------------   63 (481)
T 3f8u_A           21 AGLMLVEFFAP-WCGHAKRLAPEYEAAATRLKGI----VPLAKV-DC-----TA--------------------------   63 (481)
T ss_dssp             SSEEEEEEECT-TCHHHHHHHHHHHHHHHHTTTT----CCEEEE-ET-----TT--------------------------
T ss_pred             CCeEEEEEECC-CCHHHHHhHHHHHHHHHHhcCc----eEEEEE-EC-----CC--------------------------
Confidence            48999999999 99765  456788888888643    444444 20     11                          


Q ss_pred             HHHHHHhhccCCceEEEEECCCCce
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRI  432 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv  432 (658)
                      -+.|.+.|++++.|+++++ .+|+.
T Consensus        64 ~~~l~~~~~v~~~Ptl~~~-~~g~~   87 (481)
T 3f8u_A           64 NTNTCNKYGVSGYPTLKIF-RDGEE   87 (481)
T ss_dssp             CHHHHHHTTCCEESEEEEE-ETTEE
T ss_pred             CHHHHHhcCCCCCCEEEEE-eCCce
Confidence            0135567999999999999 56753

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3

Probab=88.46  E-value=0.081  Score=45.79  Aligned_cols=18  Identities=22%  Similarity=0.067  Sum_probs=16.1

Q ss_pred             CCccccCChhhHHHhhhc
Q 046837          445 GISAFPFTAETEEALWKE  462 (658)
Q Consensus       445 G~~AFPFT~~r~eeL~~~  462 (658)
                      |++|||||.+|+++|.++
T Consensus         1 ~~~a~pfte~~~~~~~~~   18 (89)
T 1v5n_A            1 GSSGSSGTEERLKEIEAK   18 (89)
T ss_dssp             CCCCCCCCSSCCSHHHHH
T ss_pred             CCcccccCHHHHHHHHHH
Confidence            889999999999999654

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=88.21  E-value=0.59  Score=42.78  Aligned_cols=59  Identities=8%  Similarity=0.081  Sum_probs=46.0

Q ss_pred             hhhhhhcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcC--CceeEEEeeccChhhHHHHhhcc
Q 046837          477 TILEWMKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQ--INWGMAYVGKKNAKKRLEEISSS  537 (658)
Q Consensus       477 ~I~~~i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~--~~~E~v~Vgkdn~~e~v~~~~~~  537 (658)
                      .+.+.  .||.+.|||.+.+ ..|+++.+.+.+++++.+  ..++++.|+.|...+.+++..+.
T Consensus        42 ~l~~~--~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~  103 (165)
T 3s9f_A           42 DMDSL--SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAK  103 (165)
T ss_dssp             CSGGG--TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTT
T ss_pred             cHHHc--CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHh
Confidence            34443  7999999999842 556999999999977643  48999999999888888777653

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=88.05  E-value=2.7  Score=40.41  Aligned_cols=95  Identities=11%  Similarity=0.092  Sum_probs=52.5

Q ss_pred             ccCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecc-cCCCcch-----------hhHHHHHHhhcCCC
Q 046837          328 LKKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIV-DGSIDRQ-----------QALDKFKNLQKRMP  393 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpiv-D~s~~W~-----------dde~~F~~~~~~MP  393 (658)
                      -+||.+.+.|++. |||.|.  .+.|.++.++     +..|+|+.+- ..-.++.           |....|.+.+..-+
T Consensus        84 ~~~k~~vv~F~d~-~Cp~C~~~~~~l~~l~~~-----~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~  157 (216)
T 1eej_A           84 PQEKHVITVFTDI-TCGYCHKLHEQMADYNAL-----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKS  157 (216)
T ss_dssp             TTCCEEEEEEECT-TCHHHHHHHTTHHHHHHT-----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCC
T ss_pred             CCCCEEEEEEECC-CCHHHHHHHHHHHHHHhC-----CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCC
Confidence            3588999999999 998765  4457766542     4677776431 1000111           11123443332222


Q ss_pred             ceeecCCC-CCcHHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          394 WYSIQDPA-MIQPAVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       394 WyAVpf~~-~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                         ++++. .........+.+.++++|.|++++.  +|+.+
T Consensus       158 ---~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~--dG~~~  193 (216)
T 1eej_A          158 ---VAPASCDVDIADHYALGVQLGVSGTPAVVLS--NGTLV  193 (216)
T ss_dssp             ---CCCCCCSCCHHHHHHHHHHHTCCSSSEEECT--TSCEE
T ss_pred             ---CChhHHHHHHHHHHHHHHHcCCCccCEEEEc--CCeEe
Confidence               22211 0123444567788999999999664  46543

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=87.80  E-value=0.78  Score=47.86  Aligned_cols=71  Identities=13%  Similarity=0.150  Sum_probs=48.7

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCC--CeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCc
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESK--ECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQ  404 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~--~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~  404 (658)
                      ++|.|+++|.|. ||++|.  .+.+.++.++++...  .=.|+++-+ |-      +                   .  +
T Consensus        21 ~~~~vlV~F~a~-wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~V-d~------~-------------------~--~   71 (382)
T 2r2j_A           21 NADVALVNFYAD-WCRFSQMLHPIFEEASDVIKEEFPNENQVVFARV-DC------D-------------------Q--H   71 (382)
T ss_dssp             HCSEEEEEEECT-TCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEE-ET------T-------------------T--C
T ss_pred             cCCeEEEEEECC-CCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEE-EC------C-------------------c--c
Confidence            478999999999 997764  567888888886421  122555555 20      1                   0  1


Q ss_pred             HHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          405 PAVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       405 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                          +.|.+.|++++.|+++++ ++|+.+
T Consensus        72 ----~~l~~~~~v~~~Pt~~~f-~~G~~~   95 (382)
T 2r2j_A           72 ----SDIAQRYRISKYPTLKLF-RNGMMM   95 (382)
T ss_dssp             ----HHHHHHTTCCEESEEEEE-ETTEEE
T ss_pred             ----HHHHHhcCCCcCCEEEEE-eCCcEe
Confidence                235566999999999987 478765

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=87.17  E-value=0.77  Score=40.21  Aligned_cols=53  Identities=13%  Similarity=-0.029  Sum_probs=41.1

Q ss_pred             CCcEEEEEccCCc-hHHHHHHHHHHHHHhhc-CCceeEEEeeccChhhHHHHhhc
Q 046837          484 EERFICLYGGNDE-AWIRKFRNSAKDVASKA-QINWGMAYVGKKNAKKRLEEISS  536 (658)
Q Consensus       484 egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~-~~~~E~v~Vgkdn~~e~v~~~~~  536 (658)
                      .||.+.|+|.+.+ ..|+...+.+.+++++. +..++++.|+.|...+.+++.++
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~   85 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVK   85 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHH
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHH
Confidence            7999999998842 44588888888887764 35799999999977766666554

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=86.64  E-value=3.9  Score=40.13  Aligned_cols=99  Identities=6%  Similarity=-0.038  Sum_probs=53.0

Q ss_pred             cCcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecc--cCCC------cchh-hHHHHHH-hhcCCCcee
Q 046837          329 KKKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIV--DGSI------DRQQ-ALDKFKN-LQKRMPWYS  396 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpiv--D~s~------~W~d-de~~F~~-~~~~MPWyA  396 (658)
                      .+|.+...|++. |||.|.-  +.|.+..++    ++..|+|+++-  ++..      -|.. ++.+|-. +...+.=-.
T Consensus        96 ~ak~~v~~F~D~-~Cp~C~~~~~~l~~~~~~----g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~  170 (241)
T 1v58_A           96 DAPVIVYVFADP-FCPYCKQFWQQARPWVDS----GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLK  170 (241)
T ss_dssp             TCSEEEEEEECT-TCHHHHHHHHHHHHHHHT----TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCC
T ss_pred             CCCeEEEEEECC-CChhHHHHHHHHHHHHhC----CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCC
Confidence            378899999999 9987653  345554432    46788887761  1000      0111 2233322 211110000


Q ss_pred             ecCCCCCcHH------HHHHHHHhhccCCceEEEEECCCCce
Q 046837          397 IQDPAMIQPA------VIKYVKEEWKYSKKAIIVSVDPQGRI  432 (658)
Q Consensus       397 Vpf~~~i~~~------~~r~ike~f~~~~iP~LVvL~pqGkv  432 (658)
                      +.-....+.+      ....+-+.++++|.|++++.|.+|++
T Consensus       171 l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~  212 (241)
T 1v58_A          171 LNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL  212 (241)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence            0000001112      22345578999999999999989975

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=86.60  E-value=0.045  Score=47.59  Aligned_cols=35  Identities=3%  Similarity=-0.090  Sum_probs=24.2

Q ss_pred             EEecccccCcEEEEEEecCCCCChHHH--HHHHHHHHH
Q 046837          322 TVQIHVLKKKHVLLLISRPDDISQEEI--LFLSNMYKD  357 (658)
Q Consensus       322 kV~Is~L~gK~VlLyfSa~~~~~~~~~--~~L~~iY~~  357 (658)
                      ++.++...||.+.+.|.|. ||++|..  +.|.++.++
T Consensus         4 ~~~la~~~~k~~vV~F~A~-WC~~C~~~~p~~~~~a~~   40 (106)
T 3kp8_A            4 AVGLAAHLRQIGGTMYGAY-WCPHCQDQKELFGAAFDQ   40 (106)
T ss_dssp             HHHHHHHHHHHTCEEEECT-TCHHHHHHHHHHGGGGGG
T ss_pred             hhHHHHhcCCCEEEEEECC-CCHHHHHHHHHHHHHHHh
Confidence            3455667788889999999 9988653  345444433

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=85.73  E-value=0.85  Score=46.82  Aligned_cols=68  Identities=12%  Similarity=0.110  Sum_probs=43.3

Q ss_pred             cCcEEEEEEecCCCCCh-HHHHH-------HHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCC
Q 046837          329 KKKHVLLLISRPDDISQ-EEILF-------LSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDP  400 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~-~~~~~-------L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~  400 (658)
                      +++.|++.|.|. ||+. ...|.       +.++.++++..   .|.++-+ |     -++.                  
T Consensus        27 ~~~~~lV~F~a~-wC~c~~~~p~~~~~~~~~~~~a~~~~~~---~v~~~~V-d-----~~~~------------------   78 (350)
T 1sji_A           27 KYDVLCLYYHES-VSSDKVAQKQFQLKEIVLELVAQVLEHK---DIGFVMV-D-----AKKE------------------   78 (350)
T ss_dssp             TCSEEEEEEECC-SCSSSTTSHHHHHHHHHHHHHHHHGGGS---SEEEEEE-E-----TTTT------------------
T ss_pred             hCCeEEEEEECC-CCcchhhCchhhhhhHHHHHHHHHHhhc---CcEEEEE-e-----CCCC------------------
Confidence            368999999999 9972 22333       44455445422   3555555 2     0110                  


Q ss_pred             CCCcHHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          401 AMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       401 ~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                              +.+.++|++++.|+++++ .+|++.
T Consensus        79 --------~~l~~~~~v~~~Pt~~~~-~~g~~~  102 (350)
T 1sji_A           79 --------AKLAKKLGFDEEGSLYVL-KGDRTI  102 (350)
T ss_dssp             --------HHHHHHHTCCSTTEEEEE-ETTEEE
T ss_pred             --------HHHHHhcCCCccceEEEE-ECCcEE
Confidence                    125567999999999999 678754

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=85.71  E-value=1.9  Score=46.43  Aligned_cols=66  Identities=9%  Similarity=-0.033  Sum_probs=46.0

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ++|.|+++|.+. ||++|.  .+.+.++.++++.. ++.++-|-.       +++                         
T Consensus        30 ~~~~~lv~F~a~-wC~~C~~~~p~~~~~a~~~~~~-~v~~~~vd~-------~~~-------------------------   75 (504)
T 2b5e_A           30 SHDLVLAEFFAP-WCGHCKNMAPEYVKAAETLVEK-NITLAQIDC-------TEN-------------------------   75 (504)
T ss_dssp             TCSEEEEEEECT-TCHHHHHHHHHHHHHHHHTTTT-TCEEEEEET-------TTC-------------------------
T ss_pred             cCCeEEEEEECC-CCHHHHHhHHHHHHHHHHhccC-CeEEEEEEC-------CCC-------------------------
Confidence            378999999999 997754  56788888877633 344444433       111                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCc
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGR  431 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGk  431 (658)
                        +.+.++|++++.|+++++.. |+
T Consensus        76 --~~l~~~~~v~~~Pt~~~~~~-g~   97 (504)
T 2b5e_A           76 --QDLCMEHNIPGFPSLKIFKN-SD   97 (504)
T ss_dssp             --HHHHHHTTCCSSSEEEEEET-TC
T ss_pred             --HHHHHhcCCCcCCEEEEEeC-Cc
Confidence              12566799999999999964 55

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=85.05  E-value=1.8  Score=35.31  Aligned_cols=47  Identities=13%  Similarity=0.035  Sum_probs=37.5

Q ss_pred             hhhcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837          480 EWMKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKKN  526 (658)
Q Consensus       480 ~~i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn  526 (658)
                      +.+..||.+.+||.+++ .+|+.+.+.+.++++..+..+.++.|..+.
T Consensus        16 ~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~   63 (109)
T 3tco_A           16 EVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDE   63 (109)
T ss_dssp             HHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT
T ss_pred             HHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEcccc
Confidence            33567999999999863 777999999999988766678888887764

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=84.91  E-value=0.71  Score=44.78  Aligned_cols=48  Identities=4%  Similarity=-0.126  Sum_probs=36.7

Q ss_pred             HHHhhcCCCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccc
Q 046837          385 FKNLQKRMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       385 F~~~~~~MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~n  436 (658)
                      +-.-+..+||.+|++-..    ..+.+.++|++++.|+||+++++|++...+
T Consensus       175 ~~~d~~~~~~i~v~~~~~----~~~~l~~~f~v~~~Pslvl~~~~g~~~~~~  222 (244)
T 3q6o_A          175 VALDLSQHKGVAVRRVLN----TEANVVRKFGVTDFPSCYLLFRNGSVSRVP  222 (244)
T ss_dssp             HHHHTTTCTTEEEEEEET----TCHHHHHHHTCCCSSEEEEEETTSCEEECC
T ss_pred             HHHHhccCCceEEEEEeC----chHHHHHHcCCCCCCeEEEEeCCCCeEeec
Confidence            333456778898887542    124566679999999999999999998887

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=84.71  E-value=1.2  Score=39.93  Aligned_cols=58  Identities=3%  Similarity=0.019  Sum_probs=42.4

Q ss_pred             hhhhhhcCCcEEEEEccCC-chHHHHHHHHHHHHHhhc-CCceeEEEeeccChhhHHHHhhc
Q 046837          477 TILEWMKEERFICLYGGND-EAWIRKFRNSAKDVASKA-QINWGMAYVGKKNAKKRLEEISS  536 (658)
Q Consensus       477 ~I~~~i~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~-~~~~E~v~Vgkdn~~e~v~~~~~  536 (658)
                      .+.++  .||.+.|+|.+. -..|+...+.+.+++++. +..++++.|+.|...+.+++...
T Consensus        29 ~l~~~--~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~   88 (152)
T 2lrt_A           29 SLTDL--KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSAD   88 (152)
T ss_dssp             CTTTG--GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHT
T ss_pred             eHHHh--CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHh
Confidence            44444  799999999884 133477788888887653 34699999999988777766543

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=84.53  E-value=1.7  Score=37.53  Aligned_cols=50  Identities=14%  Similarity=0.189  Sum_probs=40.8

Q ss_pred             CCcEEEEEccCCchHH---HHHHHHHHHHHhhc--CCceeEEEeeccChhhHHHHhh
Q 046837          484 EERFICLYGGNDEAWI---RKFRNSAKDVASKA--QINWGMAYVGKKNAKKRLEEIS  535 (658)
Q Consensus       484 egK~I~LYgg~d~~Wi---r~FT~~~~~i~~~~--~~~~E~v~Vgkdn~~e~v~~~~  535 (658)
                      .||.+.|||.+  .||   +...+.+.+++++.  +..++++.|+.|...+.+++..
T Consensus        32 ~gk~vll~F~~--~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~   86 (148)
T 3fkf_A           32 RNRYLLLNFWA--SWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAI   86 (148)
T ss_dssp             TTSEEEEEEEC--GGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHH
T ss_pred             CCcEEEEEEEC--CCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHH
Confidence            79999999998  666   89999999997764  4459999999987777776655

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=83.68  E-value=6.1  Score=37.90  Aligned_cols=94  Identities=14%  Similarity=0.134  Sum_probs=52.0

Q ss_pred             cCcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEE--eccc-CCC-------cch--hhHHHHHHhhcCCCc
Q 046837          329 KKKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWL--PIVD-GSI-------DRQ--QALDKFKNLQKRMPW  394 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwI--pivD-~s~-------~W~--dde~~F~~~~~~MPW  394 (658)
                      .+|.+...|++. |||.|..  +.|.+ |.+.    +.+|+|+  |+.. ++.       -|.  |..+.|.+.+..-+ 
T Consensus        85 ~~k~~vv~F~d~-~Cp~C~~~~~~l~~-~~~~----~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~-  157 (211)
T 1t3b_A           85 NEKHVVTVFMDI-TCHYCHLLHQQLKE-YNDL----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNL-  157 (211)
T ss_dssp             TCSEEEEEEECT-TCHHHHHHHTTHHH-HHHT----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCC-
T ss_pred             CCCEEEEEEECC-CCHhHHHHHHHHHH-HHhC----CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCC-
Confidence            378999999999 9987654  35666 3331    4677665  5311 000       011  12233444443321 


Q ss_pred             eeecCCC-CCcHHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          395 YSIQDPA-MIQPAVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       395 yAVpf~~-~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                        ++... .........+-+.++++|.|++++  .+|+.+
T Consensus       158 --~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~nG~~~  193 (211)
T 1t3b_A          158 --PKEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGELI  193 (211)
T ss_dssp             --CSSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSCCC
T ss_pred             --CChHHHHHHHHHHHHHHHHcCCCcCCEEEE--eCCEEe
Confidence              12111 112233456678899999999998  578743

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=83.67  E-value=6.2  Score=37.68  Aligned_cols=100  Identities=14%  Similarity=0.131  Sum_probs=62.7

Q ss_pred             cEEeccc-ccCcEEEEEEecCCCCChH---HHHHHHHHHHHh-cCCCCee-EEEEecccCCCcchhhHHHHHHhhc--CC
Q 046837          321 TTVQIHV-LKKKHVLLLISRPDDISQE---EILFLSNMYKDL-KESKECR-IVWLPIVDGSIDRQQALDKFKNLQK--RM  392 (658)
Q Consensus       321 ~kV~Is~-L~gK~VlLyfSa~~~~~~~---~~~~L~~iY~~l-k~~~~fE-IVwIpivD~s~~W~dde~~F~~~~~--~M  392 (658)
                      +.|.+++ ++||.|.|||=-..|||.|   ++..+.+.|+++ +. .+.+ |+=||.++     -...+.|.+-..  ..
T Consensus        33 ~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~-~g~~~V~gvS~D~-----~~~~~~~~~~~~~~~f  106 (182)
T 1xiy_A           33 TSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKE-NNFDDIYCITNND-----IYVLKSWFKSMDIKKI  106 (182)
T ss_dssp             EEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT-SCCSEEEEEESSC-----HHHHHHHHHHTTCCSS
T ss_pred             eeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEeCCC-----HHHHHHHHHHcCCCCc
Confidence            6899998 6999988877655477644   466799999999 74 4564 88899742     115667765433  23


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccC------C-----ceEEEEECCCCceeccc
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYS------K-----KAIIVSVDPQGRILNQN  436 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~------~-----iP~LVvL~pqGkv~~~n  436 (658)
                      |-+|=  ++   .+.    .+.|++.      |     .....|+| +|+|....
T Consensus       107 ~lLsD--~~---~~~----a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~  151 (182)
T 1xiy_A          107 KYISD--GN---SSF----TDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMF  151 (182)
T ss_dssp             EEEEC--TT---SHH----HHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEE
T ss_pred             eEEEe--Cc---hHH----HHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEE
Confidence            33332  11   223    3335542      2     34566678 99997654

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=83.40  E-value=1.5  Score=38.64  Aligned_cols=58  Identities=7%  Similarity=0.075  Sum_probs=42.8

Q ss_pred             hhhhhhcCCcEEEEEccCC-chHHHHHHHHHHHHHhhc-CCceeEEEeeccChhhHHHHhhc
Q 046837          477 TILEWMKEERFICLYGGND-EAWIRKFRNSAKDVASKA-QINWGMAYVGKKNAKKRLEEISS  536 (658)
Q Consensus       477 ~I~~~i~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~-~~~~E~v~Vgkdn~~e~v~~~~~  536 (658)
                      .+.+.  .||.+.|+|.+. -..|++..+.+.+++++. +..++++.|+.|...+.+++..+
T Consensus        23 ~l~~~--~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~   82 (152)
T 2lrn_A           23 SLNDF--KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIE   82 (152)
T ss_dssp             ESGGG--TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHH
T ss_pred             eHHHc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHH
Confidence            34443  799999999884 244588899998887764 34699999999976666666543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=83.01  E-value=2  Score=37.76  Aligned_cols=64  Identities=3%  Similarity=-0.129  Sum_probs=42.8

Q ss_pred             cCCChhhhhhhcCCcEEEEEccCC-chHHHHH-HHHHHHHHhhcC-CceeEEEeecc------ChhhHHHHhhcc
Q 046837          472 GDIDATILEWMKEERFICLYGGND-EAWIRKF-RNSAKDVASKAQ-INWGMAYVGKK------NAKKRLEEISSS  537 (658)
Q Consensus       472 ~~id~~I~~~i~egK~I~LYgg~d-~~Wir~F-T~~~~~i~~~~~-~~~E~v~Vgkd------n~~e~v~~~~~~  537 (658)
                      +|-...+.++  .||.+.|+|.+. -..|+.. .+.+.+++++.+ ..++++.|+.+      +..+.+++..+.
T Consensus        19 ~g~~~~l~~~--~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~   91 (160)
T 3lor_A           19 NHEGLSNEDL--RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDE   91 (160)
T ss_dssp             SSCCCCHHHH--TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHH
T ss_pred             CCCccCHHHh--CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHH
Confidence            4433445554  799999999884 2444774 888888877643 46999999863      345555555443

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=82.66  E-value=2.8  Score=34.07  Aligned_cols=44  Identities=5%  Similarity=-0.114  Sum_probs=36.3

Q ss_pred             CCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeeccCh
Q 046837          484 EERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKKNA  527 (658)
Q Consensus       484 egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn~  527 (658)
                      .+|.+.+||.+++ .+|+++.+.+.++++..+..+.++.|.-++.
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~   62 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDEN   62 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcC
Confidence            8899999999863 6779999999999887666688888887643

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=81.74  E-value=2.1  Score=37.33  Aligned_cols=55  Identities=7%  Similarity=0.022  Sum_probs=42.7

Q ss_pred             CCcEEEEEccCC-chHHHHHHHHHHH---HHhh-cCCceeEEEeeccChhhHHHHhhccc
Q 046837          484 EERFICLYGGND-EAWIRKFRNSAKD---VASK-AQINWGMAYVGKKNAKKRLEEISSSI  538 (658)
Q Consensus       484 egK~I~LYgg~d-~~Wir~FT~~~~~---i~~~-~~~~~E~v~Vgkdn~~e~v~~~~~~i  538 (658)
                      .||.+.|+|-+. -..|+...+.+.+   ++++ .+..++++.|+.|+..+.+++.++..
T Consensus        30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~   89 (142)
T 3eur_A           30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDF   89 (142)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhc
Confidence            789999999873 2455888888888   7665 35689999999998888777766543

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=81.66  E-value=1.1  Score=38.62  Aligned_cols=53  Identities=8%  Similarity=-0.036  Sum_probs=40.5

Q ss_pred             CCcEEEEEccCCchHH---HHHHHHHHHHHhhcC-CceeEEEeeccChhhHHHHhhccc
Q 046837          484 EERFICLYGGNDEAWI---RKFRNSAKDVASKAQ-INWGMAYVGKKNAKKRLEEISSSI  538 (658)
Q Consensus       484 egK~I~LYgg~d~~Wi---r~FT~~~~~i~~~~~-~~~E~v~Vgkdn~~e~v~~~~~~i  538 (658)
                      .||.+.|||.+  .||   +...+.+.+++++.+ ..++++.|+.|...+.+++.....
T Consensus        30 ~gk~vll~f~~--~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~   86 (148)
T 3hcz_A           30 QAKYTILFFWD--SQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSK   86 (148)
T ss_dssp             CCSEEEEEEEC--GGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHH
T ss_pred             CCCEEEEEEEC--CCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHc
Confidence            89999999988  566   788888888876533 359999999997666666665443

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=81.60  E-value=2.5  Score=34.37  Aligned_cols=45  Identities=9%  Similarity=-0.022  Sum_probs=35.7

Q ss_pred             hcCCcEEEEEccCC-chHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837          482 MKEERFICLYGGND-EAWIRKFRNSAKDVASKAQINWGMAYVGKKN  526 (658)
Q Consensus       482 i~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn  526 (658)
                      ++.||.+.+||.++ -.+|+++.+.+.++++..+..+.++.|..++
T Consensus        15 ~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~   60 (109)
T 2yzu_A           15 LGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDE   60 (109)
T ss_dssp             HHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTT
T ss_pred             hcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCC
Confidence            45789999999885 3667999999999988765568888887663

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=81.55  E-value=1.6  Score=38.79  Aligned_cols=85  Identities=14%  Similarity=0.070  Sum_probs=51.3

Q ss_pred             CcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ++.|.++|.+. ||++|..  +.|.++-++.   .+  +.|+-+ |      -++         .               
T Consensus        23 ~~~vvv~F~a~-wc~~C~~~~p~l~~la~~~---~~--v~f~kv-d------~d~---------~---------------   65 (118)
T 3evi_A           23 DVWVIIHLYRS-SIPMCLLVNQHLSLLARKF---PE--TKFVKA-I------VNS---------C---------------   65 (118)
T ss_dssp             TCEEEEEEECT-TSHHHHHHHHHHHHHHHHC---TT--SEEEEE-E------GGG---------T---------------
T ss_pred             CCeEEEEEeCC-CChHHHHHHHHHHHHHHHC---CC--CEEEEE-E------hHH---------h---------------
Confidence            45899999999 9988764  3444443332   33  455555 1      121         0               


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceecc-chHHHHHHhCCccccCChhhHHHhhh
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILNQ-NAFHTLWIWGISAFPFTAETEEALWK  461 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~~-nA~~mI~~wG~~AFPFT~~r~eeL~~  461 (658)
                          .+.|+++++|+++++- +|+.+.. .|..   ..|-+  -||.+.+|..-.
T Consensus        66 ----~~~~~v~~~PT~~~fk-~G~~v~~~~G~~---~~gg~--~~~~~~le~~L~  110 (118)
T 3evi_A           66 ----IQHYHDNCLPTIFVYK-NGQIEAKFIGII---ECGGI--NLKLEELEWKLA  110 (118)
T ss_dssp             ----STTCCGGGCSEEEEEE-TTEEEEEEESTT---TTTCS--SCCHHHHHHHHH
T ss_pred             ----HHHCCCCCCCEEEEEE-CCEEEEEEeChh---hhCCC--CCCHHHHHHHHH
Confidence                0348999999999995 7877643 2111   22222  588877776543

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=81.44  E-value=2.9  Score=34.16  Aligned_cols=45  Identities=7%  Similarity=-0.104  Sum_probs=35.5

Q ss_pred             hcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837          482 MKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKKN  526 (658)
Q Consensus       482 i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn  526 (658)
                      ++.||.+.++|.+++ .+|+++.+.+.++++..+..+.++.|.-+.
T Consensus        14 ~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~   59 (105)
T 1nsw_A           14 IQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE   59 (105)
T ss_dssp             HSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTT
T ss_pred             HhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcC
Confidence            468899999998853 667999999999988765568888887663

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=81.29  E-value=6.5  Score=37.32  Aligned_cols=100  Identities=11%  Similarity=0.182  Sum_probs=63.8

Q ss_pred             cEEeccc-ccCcEEEEEEecCCCCC--hHHHHHHHHHHHHhcCCCCee-EEEEecccCCCcchhhHHHHHHhhc---CCC
Q 046837          321 TTVQIHV-LKKKHVLLLISRPDDIS--QEEILFLSNMYKDLKESKECR-IVWLPIVDGSIDRQQALDKFKNLQK---RMP  393 (658)
Q Consensus       321 ~kV~Is~-L~gK~VlLyfSa~~~~~--~~~~~~L~~iY~~lk~~~~fE-IVwIpivD~s~~W~dde~~F~~~~~---~MP  393 (658)
                      +.|++++ ++||.|.|||=-..|+|  ..++..+.+.|++++. .+.+ |+=||.++     -...+.|.+-..   ..|
T Consensus        32 ~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~-~gv~~VigIS~D~-----~~~~~~w~~~~~~~~~f~  105 (171)
T 2xhf_A           32 KSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKE-EGYHTIACIAVND-----PFVMAAWGKTVDPEHKIR  105 (171)
T ss_dssp             CEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHH-TTCCEEEEEESSC-----HHHHHHHHHHHCTTCCSE
T ss_pred             cEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCCEEEEEeCCC-----HHHHHHHHHhcCCCCCeE
Confidence            7899999 59999888876664675  4567789999999864 4675 99999843     116677866443   234


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccC-----------CceEEEEECCCCceeccc
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYS-----------KKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~-----------~iP~LVvL~pqGkv~~~n  436 (658)
                      -+|=|.     .+..+.    |++.           ..-...|+| +|+|....
T Consensus       106 lLSD~~-----~~~a~a----yGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~  149 (171)
T 2xhf_A          106 MLADMH-----GEFTRA----LGTELDSSKMLGNNRSRRYAMLID-DNKIRSVS  149 (171)
T ss_dssp             EEECTT-----SHHHHH----HTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred             EEEeCC-----chHHHH----hCCceeccccCCCcceEEEEEEEe-CCEEEEEE
Confidence            333221     233333    4431           223455668 99987543

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=81.07  E-value=2.2  Score=39.16  Aligned_cols=62  Identities=5%  Similarity=0.044  Sum_probs=41.9

Q ss_pred             CCChhhhhhhcCCcEEEEEccCC-chHHHHHHHHHHHHHhhc-CCceeEEEeeccC-------hhhHHHHhhc
Q 046837          473 DIDATILEWMKEERFICLYGGND-EAWIRKFRNSAKDVASKA-QINWGMAYVGKKN-------AKKRLEEISS  536 (658)
Q Consensus       473 ~id~~I~~~i~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~-~~~~E~v~Vgkdn-------~~e~v~~~~~  536 (658)
                      |-...+++.  .||.+.|+|.+. -..|+.-.+.+.+++++. +..++++.|+.|.       ..+.+++...
T Consensus        28 G~~v~l~~~--~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~   98 (180)
T 3kij_A           28 GRTVSLEKY--KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFAR   98 (180)
T ss_dssp             SCEEEGGGG--TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHH
T ss_pred             CCEecHHHc--CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHH
Confidence            333344554  899999999883 234488888888887764 4469999998653       4455555443

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=80.97  E-value=2.7  Score=36.64  Aligned_cols=54  Identities=7%  Similarity=-0.094  Sum_probs=40.5

Q ss_pred             CCcEEEEEccCC-chHHHHHHHHHHHHHhhc-CCceeEEEeeccChhhHHHHhhcc
Q 046837          484 EERFICLYGGND-EAWIRKFRNSAKDVASKA-QINWGMAYVGKKNAKKRLEEISSS  537 (658)
Q Consensus       484 egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~-~~~~E~v~Vgkdn~~e~v~~~~~~  537 (658)
                      .||.+.|||.+. -..|+.+.+.+.++++.. +..++++.|+.+...+.+++..+.
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~   82 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQ   82 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHH
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHH
Confidence            799999999874 355689999998887753 335999999998766666655443

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=80.81  E-value=1.4  Score=39.92  Aligned_cols=65  Identities=0%  Similarity=-0.097  Sum_probs=41.3

Q ss_pred             HhCCccccCChhhHHHhhhcCCCchhhcccCCChhhhhhhcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhc-CCceeEE
Q 046837          443 IWGISAFPFTAETEEALWKEKPWTLELLVGDIDATILEWMKEERFICLYGGNDE-AWIRKFRNSAKDVASKA-QINWGMA  520 (658)
Q Consensus       443 ~wG~~AFPFT~~r~eeL~~~e~w~le~Lv~~id~~I~~~i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~-~~~~E~v  520 (658)
                      -+|+.|++|+-.              .+ +|-...+++.  .||.+.|+|.+.+ ..|+ ..+.+.+++++. +..++++
T Consensus         7 ~~~~~~~~f~l~--------------d~-~G~~~~l~~~--~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv   68 (171)
T 3cmi_A            7 HHMSEFYKLAPV--------------DK-KGQPFPFDQL--KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTII   68 (171)
T ss_dssp             ---CGGGGCCCB--------------BT-TSCBCCGGGG--TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEE
T ss_pred             cchhheeeeEEE--------------cC-CCCEecHHHc--CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEE
Confidence            467888888421              11 2333344554  7999999998831 3347 778888887653 3469999


Q ss_pred             Eeecc
Q 046837          521 YVGKK  525 (658)
Q Consensus       521 ~Vgkd  525 (658)
                      .|+.|
T Consensus        69 ~vs~d   73 (171)
T 3cmi_A           69 GFPCN   73 (171)
T ss_dssp             EEEEC
T ss_pred             EEECc
Confidence            99875

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=80.40  E-value=1.8  Score=45.14  Aligned_cols=71  Identities=10%  Similarity=0.092  Sum_probs=44.7

Q ss_pred             cCcEEEEEEecCCCCChHHH-HHHH---HHHHHhcCC-CCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837          329 KKKHVLLLISRPDDISQEEI-LFLS---NMYKDLKES-KECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI  403 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~~-~~L~---~iY~~lk~~-~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i  403 (658)
                      .++.|++.|.|. ||+++.. +.|.   .+|+++... ..-.|.+.-+ |-      ++                     
T Consensus        29 ~~~~vlV~FyAp-WC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~V-d~------~~---------------------   79 (367)
T 3us3_A           29 KYEVLALLYHEP-PEDDKASQRQFEMEELILELAAQVLEDKGVGFGLV-DS------EK---------------------   79 (367)
T ss_dssp             HCSEEEEEEECC-CCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEE-ET------TT---------------------
T ss_pred             hCCeEEEEEECC-CchhHHHhhhhccccHHHHHHHHHhhcCCceEEEE-eC------cc---------------------
Confidence            368899999999 9987643 3233   355554221 1123666655 20      11                     


Q ss_pred             cHHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          404 QPAVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       404 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                          -+.|.++|++++.|+++++. +|+.+
T Consensus        80 ----~~~l~~~~~V~~~PTl~~f~-~G~~~  104 (367)
T 3us3_A           80 ----DAAVAKKLGLTEEDSIYVFK-EDEVI  104 (367)
T ss_dssp             ----THHHHHHHTCCSTTEEEEEE-TTEEE
T ss_pred             ----cHHHHHHcCCCcCceEEEEE-CCcEE
Confidence                01356679999999999997 57764

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=80.14  E-value=2.9  Score=35.17  Aligned_cols=52  Identities=10%  Similarity=-0.070  Sum_probs=40.9

Q ss_pred             CCcEEEEEccCC-chHHHHHHHHHHHHHhhcCCceeEEEeeccChhhHHHHhhc
Q 046837          484 EERFICLYGGND-EAWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKRLEEISS  536 (658)
Q Consensus       484 egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn~~e~v~~~~~  536 (658)
                      .||.+.|+|.+. -..|+.+.+.+.+++++.+ .++++.|+.+...+.+++..+
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~   76 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVN   76 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHH
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHH
Confidence            789999998874 3556888899999987766 899999998876666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	658
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.79
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.68
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.6
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.92
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.9
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	98.75
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.7
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	98.67
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.64
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	98.6
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	98.58
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.45
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.44
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.36
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.14
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	98.06
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.01
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.84
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.83
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	97.81
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	97.81
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	97.63
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	97.61
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	97.55
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	97.46
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	97.42
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	97.39
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	97.36
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	97.21
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	97.06
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	96.95
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	96.83
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.63
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	96.48
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	96.41
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.23
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	96.22
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.17
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	96.1
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	95.97
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	95.91
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	95.89
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	95.79
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	95.58
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	95.57
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	95.43
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	95.36
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	95.35
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	95.21
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	95.06
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	95.02
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	94.9
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	94.38
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	94.3
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	94.1
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	93.72
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	93.71
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	93.62
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	93.47
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	93.18
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	91.97
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	91.76
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	91.23
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	91.2
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	90.92
d1wjka_	100	Thioredoxin-like structure containing protein C330	89.82
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	89.72
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	88.13
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	87.55
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	87.11
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	86.0
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	83.71
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	81.71
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	81.33

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.79  E-value=4.5e-19  Score=162.22  Aligned_cols=126  Identities=17%  Similarity=0.326  Sum_probs=111.1

Q ss_pred             cccCCCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcC
Q 046837          314 LVDGETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKR  391 (658)
Q Consensus       314 l~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~  391 (658)
                      +++|+ |.+|++++|+||.|+|+|.|. ||++  .+++.|.++|++.+.+.+||||.|+.+       ++++.++++.++
T Consensus        13 ~l~~~-~~~v~ls~l~GK~vll~FwAt-WC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D-------~~~~~~~~~~~~   83 (144)
T d1i5ga_          13 VLKGA-AADIALPSLAGKTVFFYFSAS-WCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWD-------ESAEDFKDYYAK   83 (144)
T ss_dssp             EEETT-EEEEEGGGGTTSEEEEEEECT-TCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC-------SSHHHHHHHHTT
T ss_pred             hccCC-CCEeeHHHcCCCEEEEEEEec-CCchHhhhhHhHHHHHHHHHhccCcEEEEEecc-------ccHHHHHHHHHh
Confidence            67775 667999999999999999999 9976  578899999999988789999999972       377889999999


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCC-CceeccchHHHHHH-hCCccccC
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQ-GRILNQNAFHTLWI-WGISAFPF  451 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pq-Gkv~~~nA~~mI~~-wG~~AFPF  451 (658)
                      ++|+.+++.+   ..+...|.+.|+++++|++++||++ |+|++.+|++++.+ -+..+||+
T Consensus        84 ~~~~~~~~~d---~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~~~g~~~v~~d~~~~~fpw  142 (144)
T d1i5ga_          84 MPWLALPFED---RKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPW  142 (144)
T ss_dssp             CSSEECCTTC---HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred             CCCCceeeEC---hHHHHHHHHHCCCCCcCEEEEEeCCCCEEEeehhHHHHhhCcccccCCC
Confidence            9999999965   4566778899999999999999996 99999999999876 45778997

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.68  E-value=1.7e-16  Score=143.96  Aligned_cols=121  Identities=16%  Similarity=0.263  Sum_probs=102.9

Q ss_pred             CcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceee
Q 046837          320 RTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSI  397 (658)
Q Consensus       320 ~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAV  397 (658)
                      |.+|++++|+||.|+|+|.|. ||++  .+++.|.++|++.+.+.+|+||.|+..       ++++.+.++...++|+.+
T Consensus        18 ~~~v~l~~~~GK~vvl~Fwat-wC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d-------~~~~~~~~~~~~~~~~~~   89 (144)
T d1o73a_          18 SGEVSLGSLVGKTVFLYFSAS-WCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWD-------ENESDFHDYYGKMPWLAL   89 (144)
T ss_dssp             TSCBCSGGGTTCEEEEEEECT-TCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC-------SSHHHHHHHHTTCSSEEC
T ss_pred             CCEEeHHHhCCCEEEEEeChh-hCccchhhhHHHHHHHHHHhhccCeEEEEEecc-------hhHHHHHHHHHhccccce
Confidence            345999999999999999999 9976  578899999999987789999999972       366788888899999999


Q ss_pred             cCCCCCcHHHHHHHHHhhccCCceEEEEECCC-CceeccchHHH-HHHhCCccccC
Q 046837          398 QDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQ-GRILNQNAFHT-LWIWGISAFPF  451 (658)
Q Consensus       398 pf~~~i~~~~~r~ike~f~~~~iP~LVvL~pq-Gkv~~~nA~~m-I~~wG~~AFPF  451 (658)
                      ||..   ......+.+.|+++++|++++||+| |+++..+++.. +......+|||
T Consensus        90 ~~~~---~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~~~~~~~~~d~~~~~fpw  142 (144)
T d1o73a_          90 PFDQ---RSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPW  142 (144)
T ss_dssp             CTTC---HHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred             eeec---cchHHHHHHHcCCCcCCEEEEEECCCCEEEeecchhhhhhCcccccCCC
Confidence            9964   3445567888999999999999998 99999998654 45556778998

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.60  E-value=2.6e-15  Score=134.53  Aligned_cols=125  Identities=19%  Similarity=0.291  Sum_probs=105.9

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCce
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWY  395 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWy  395 (658)
                      ++|.+|+++.|+||.|+|+|.+. ||++  .+.+.|.++|++++...++++|+|+..       ++.+.+..++..++|+
T Consensus        14 ~~g~~v~l~~l~GK~vll~Fwa~-wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d-------~~~~~~~~~~~~~~~~   85 (144)
T d1o8xa_          14 RGDGEVEVKSLAGKLVFFYFSAS-WCPPARGFTPQLIEFYDKFHESKNFEVVFCTWD-------EEEDGFAGYFAKMPWL   85 (144)
T ss_dssp             ETTEEEEGGGGTTCEEEEEEECT-TCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC-------CSHHHHHHHHTTCSSE
T ss_pred             CCCCEEeHHHhCCCEEEEEeccc-cccccccccchhHHhhhhccccccccccccccc-------ccHHHHHHHHhhcccc
Confidence            34668999999999999999999 9976  467789999999987889999999972       3778899999999999


Q ss_pred             eecCCCCCcHHHHHHHHHhhccCCceEEEEECCC-CceeccchHHHH-HHhCCccccCCh
Q 046837          396 SIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQ-GRILNQNAFHTL-WIWGISAFPFTA  453 (658)
Q Consensus       396 AVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pq-Gkv~~~nA~~mI-~~wG~~AFPFT~  453 (658)
                      .+|+..   ......+.+.|+++++|+.+++|++ |+|+..+++..+ .......||+..
T Consensus        86 ~~~~~~---~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~~~~~~~~~d~~~~~~~w~~  142 (144)
T d1o8xa_          86 AVPFAQ---SEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKD  142 (144)
T ss_dssp             ECCGGG---HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCC
T ss_pred             ceeeec---ccchhhHHHHcCCCcCCEEEEEeCCCCEEEEEechhhhhhCcccccCCCCC
Confidence            999953   2445678889999999999999998 899999988766 456677788754

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.92  E-value=3.5e-10  Score=100.48  Aligned_cols=112  Identities=8%  Similarity=0.002  Sum_probs=84.1

Q ss_pred             cCCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837          316 DGETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP  393 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP  393 (658)
                      ...+|+.|+++.++||.|+|+|.|. ||++|  +++.|.+.|++.+ ..+++++-|+......++  +...+..++....
T Consensus         9 ~~~~~~~~~l~~~~gk~vvl~F~a~-wC~~C~~~~~~l~~l~~~~~-~~~~~~i~v~~~~~~~~~--~~~~~~~~~~~~~   84 (143)
T d2fy6a1           9 KTADNRPASVYLKKDKPTLIKFWAS-WCPLCLSELGQTEKWAQDAK-FSSANLITVASPGFLHEK--KDGDFQKWYAGLN   84 (143)
T ss_dssp             EETTSCBGGGGCCTTSCEEEEEECT-TCHHHHTTHHHHHHHHHCGG-GTTSEEEEEECTTSTTCC--CTTHHHHHHTTSC
T ss_pred             ECCCCCEeeHHHhCCCEEEEEEECC-CCccccccCcchhhhhhhhc-cCCcEEEEEeeeeccccc--chhhhhhhhhhcC
Confidence            3457888999999999999999999 99765  5788999999986 346888888874322223  4445666677777


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      ++..|...  |.  ...+.+.|++.++|+.+++|++|+++..
T Consensus        85 ~~~~~~~~--D~--~~~~~~~~~v~~~P~~~liD~~G~i~~~  122 (143)
T d2fy6a1          85 YPKLPVVT--DN--GGTIAQSLNISVYPSWALIGKDGDVQRI  122 (143)
T ss_dssp             CTTSCEEE--CT--TCHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred             Cccccccc--cc--chHHHHHcCCCccCEEEEECCCCEEEEE
Confidence            76655521  22  2245567999999999999999998754

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.90  E-value=4.2e-09  Score=97.19  Aligned_cols=112  Identities=14%  Similarity=0.136  Sum_probs=84.3

Q ss_pred             ccCCCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837          315 VDGETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM  392 (658)
Q Consensus       315 ~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M  392 (658)
                      +...+|++|++++|+||.|+|+|.+. ||++  .+.+.|.++|++.+ ...++||+|++...+   .+.-++|-+- ...
T Consensus        41 l~d~~G~~v~L~~~kGK~vll~F~a~-wC~~C~~~~~~l~~~~~~~~-~~~~~vv~vs~d~~~---~~~~~~~~~~-~~~  114 (176)
T d1jfua_          41 FEDADGKPKKLSDFRGKTLLVNLWAT-WCVPCRKEMPALDELQGKLS-GPNFEVVAINIDTRD---PEKPKTFLKE-ANL  114 (176)
T ss_dssp             EECTTSCEEEGGGGTTSEEEEEEECT-TCHHHHHHHHHHHHHHHHHC-BTTEEEEEEECCCSC---TTHHHHHHHH-TTC
T ss_pred             EECCCcCEEeHHHhCCCEEEEEeccC-cccchHHHHHhhhhcccccc-ccccccccccccccc---hhhhhhhHhh-hCC
Confidence            45567889999999999999999999 9976  46678999998864 578899999973210   1234445432 345


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                      +|+.+....  +....+.+...+++.++|+.++||++|+++.
T Consensus       115 ~~~~~~~d~--~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~  154 (176)
T d1jfua_         115 TRLGYFNDQ--KAKVFQDLKAIGRALGMPTSVLVDPQGCEIA  154 (176)
T ss_dssp             CTTCCEECT--TCHHHHHHHTTTCCSSSSEEEEECTTSBEEE
T ss_pred             cceeeeecc--hhHHHHHHhhhccCCCCCeEEEEcCCCEEEE
Confidence            665555544  3456777788899999999999999999974

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.75  E-value=3.4e-08  Score=87.24  Aligned_cols=100  Identities=13%  Similarity=0.082  Sum_probs=73.2

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCce
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWY  395 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWy  395 (658)
                      .+|+.+++++++||.|+|+|.+. |||+  .+++.|.++|++.   .+..+|+|+..+.   - +.-..|-+-+ ..+|.
T Consensus        12 ~~G~~~~l~~~~Gk~vll~F~a~-wC~~C~~~~p~l~~~~~~~---~~v~~v~v~~~~~---~-~~~~~~~~~~-~~~~p   82 (134)
T d1lu4a_          12 LSGAPFDGASLQGKPAVLWFWTP-WCPFCNAEAPSLSQVAAAN---PAVTFVGIATRAD---V-GAMQSFVSKY-NLNFT   82 (134)
T ss_dssp             TTSCEEEGGGGTTSCEEEEEECT-TCHHHHHHHHHHHHHHHHC---TTSEEEEEECSSC---H-HHHHHHHHHH-TCCSE
T ss_pred             CCCCEEcHHHhCCCEEEEEEeec-ccCCceecchhHHHHhhhh---ccccccccccccc---h-hhhhhhhhhh-ccccc
Confidence            47889999999999999999999 9976  4677899998864   5789999997431   0 1333454333 34554


Q ss_pred             eecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          396 SIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       396 AVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                      .+.-++   .    .+.+.|++.++|+++++|++|++.
T Consensus        83 ~~~d~~---~----~~~~~~~v~~~P~~~lid~~G~i~  113 (134)
T d1lu4a_          83 NLNDAD---G----VIWARYNVPWQPAFVFYRADGTST  113 (134)
T ss_dssp             EEECTT---S----HHHHHTTCCSSSEEEEECTTSCEE
T ss_pred             eeeCch---H----HHHHHcCCCcCCEEEEEeCCCeEE
Confidence            443222   2    345569999999999999999875

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.70  E-value=3.6e-08  Score=87.78  Aligned_cols=106  Identities=17%  Similarity=0.128  Sum_probs=72.9

Q ss_pred             ccCCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837          315 VDGETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM  392 (658)
Q Consensus       315 ~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M  392 (658)
                      .++..+..+.++.++||.|+|+|.+. ||++|  +++.|.++++    ..+++++.|...+   .. ++.++|..- ..+
T Consensus        16 ~~~~~~~~~~~~~~kgK~vll~fwa~-wC~~C~~~~p~l~~l~~----~~~~~~~~i~~~~---~~-~~~~~~~~~-~~~   85 (144)
T d1knga_          16 ADNVQVPGLDPAAFKGKVSLVNVWAS-WCVPCHDEAPLLTELGK----DKRFQLVGINYKD---AA-DNARRFLGR-YGN   85 (144)
T ss_dssp             ETTEECCCBCGGGGTTSCEEEEEECT-TCHHHHHHHHHHHHHTT----CTTSEEEEEEESC---CH-HHHHHHHHH-HCC
T ss_pred             ccCCcCCccCHHHhCCCEEEEEeecc-ccccccccCchhhhhhh----ccCceeEEEEeee---ch-HHHHHHHHH-cCC
Confidence            35556677999999999999999999 99876  4555665543    4568999998743   11 233344332 244


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccc
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~n  436 (658)
                      +|+.+-+..  +.    .+.+.|++.++|+.++||++|+++...
T Consensus        86 ~~~~~~~d~--~~----~~~~~~~v~~~P~~~liD~~G~i~~~~  123 (144)
T d1knga_          86 PFGRVGVDA--NG----RASIEWGVYGVPETFVVGREGTIVYKL  123 (144)
T ss_dssp             CCSEEEEET--TS----HHHHHTTCCSSCEEEEECTTSBEEEEE
T ss_pred             ccccccccc--cc----hhhhhcCccccceEEEEcCCCeEEEEE
Confidence            444333311  11    356679999999999999999998653

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.67  E-value=6.7e-08  Score=84.66  Aligned_cols=102  Identities=16%  Similarity=0.122  Sum_probs=73.5

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCce
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWY  395 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWy  395 (658)
                      .+|+.+.+++++||.|+|.|-+. |||+  .+.+.|.++|++.   .+..+|.|+..|.    .++...|-..+ ..+++
T Consensus        13 ~~G~~~~l~~~~Gk~vll~fwa~-wC~~C~~~~p~l~~l~~~~---~~~~~v~v~~~d~----~~~~~~~~~~~-~~~~~   83 (134)
T d1zzoa1          13 LDGHDFHGESLLGKPAVLWFWAP-WCPTCQGEAPVVGQVAASH---PEVTFVGVAGLDQ----VPAMQEFVNKY-PVKTF   83 (134)
T ss_dssp             TTSCEEEGGGGTTSCEEEEEECT-TCHHHHHHHHHHHHHHHHC---TTSEEEEEECSSC----HHHHHHHHHHT-TCTTS
T ss_pred             CCCCEEeHHHhCCCEEEEEeccc-ccCcccccchhhHHHHhhh---ccccccccccccc----chhHHHHHHhc-CCcce
Confidence            46789999999999999999999 9976  4678899999875   3566788876431    12444454433 34444


Q ss_pred             eecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          396 SIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       396 AVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                      .+-+..  +.    .+.+.|++.+.|..+++|++|++..
T Consensus        84 ~~l~D~--~~----~~~~~~~v~~~P~~~iiD~~G~i~~  116 (134)
T d1zzoa1          84 TQLADT--DG----SVWANFGVTQQPAYAFVDPHGNVDV  116 (134)
T ss_dssp             EEEECT--TC----HHHHHTTCCSSSEEEEECTTCCEEE
T ss_pred             eEEeec--cc----hHHHhcCCCccCeEEEECCCCeEEE
Confidence            444422  12    3556699999999999999999854

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.64  E-value=3.9e-08  Score=86.67  Aligned_cols=104  Identities=18%  Similarity=0.288  Sum_probs=76.4

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCce
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWY  395 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWy  395 (658)
                      .+|+.+++++++||.++++|.+. ||++|  +.+.|.++|++... .++.+|.|+..|.    .++-++|-+ ....||.
T Consensus        13 ~~G~~~~l~~~~gk~~li~f~~~-~C~~C~~~~~~l~~~~~~~~~-~~~~~v~i~~~~~----~~~~~~~~~-~~~~~~~   85 (137)
T d1st9a_          13 TNGKRIELSDLKGKGVFLNFWGT-WCEPCKKEFPYMANQYKHFKS-QGVEIVAVNVGES----KIAVHNFMK-SYGVNFP   85 (137)
T ss_dssp             TTSCEEEGGGGTTSEEEEEEECT-TCHHHHHHHHHHHHHHHHHGG-GTEEEEEEEESCC----HHHHHHHHH-HTTCCSC
T ss_pred             CCcCEEeHHHhCCCEEEEEEeec-cccceeecccccccccccccc-cccccccccccch----hhhHHHHHH-HcCCCcc
Confidence            36788999999999999999999 99765  56779999999864 4799999997331    113333432 1245655


Q ss_pred             eecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          396 SIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       396 AVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      .+--++   .    .+.+.|++.+.|.++++|++|+++..
T Consensus        86 ~~~d~~---~----~~~~~~~v~~~P~~~liD~~G~i~~~  118 (137)
T d1st9a_          86 VVLDTD---R----QVLDAYDVSPLPTTFLINPEGKVVKV  118 (137)
T ss_dssp             EEEETT---S----HHHHHTTCCSSCEEEEECTTSEEEEE
T ss_pred             cccccc---c----hhhhhhhccccceEEEECCCCEEEEE
Confidence            543322   2    35556999999999999999999754

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=1.1e-07  Score=83.80  Aligned_cols=100  Identities=22%  Similarity=0.187  Sum_probs=68.9

Q ss_pred             CCcEEecccc-cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCce
Q 046837          319 TRTTVQIHVL-KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWY  395 (658)
Q Consensus       319 ~~~kV~Is~L-~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWy  395 (658)
                      .|+.+..+.| +||.|+|.|-|. ||++|  +.|.|.++++     .++.+|.+...+   +.......+.+.  ..+|+
T Consensus         8 ~g~~~~~~~l~~Gk~vvl~Fwat-WC~pC~~e~p~l~~~~~-----~~~~vi~i~~~~---~~~~~~~~~~~~--~~~~~   76 (136)
T d1z5ye1           8 PGQFYQADVLTQGKPVLLNVWAT-WCPTSRAEHQYLNQLSA-----QGIRVVGMNYKD---DRQKAISWLKEL--GNPYA   76 (136)
T ss_dssp             TTCEECHHHHHSSSCEEEEEECT-TCHHHHHHHHHHHHHHH-----TTCCEEEEEESC---CHHHHHHHHHHH--CCCCS
T ss_pred             CCcEecHHHHcCCCEEEEEEEcC-cCCCcCccccchhhhhh-----hhhhhccccccc---chhhhHHHHHHc--CCccc
Confidence            4778899999 899999999999 99764  6788888765     368899888743   111122223333  33333


Q ss_pred             eecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          396 SIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       396 AVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      .+.+..  +.    .+.+.|++.++|+.+++|++|+++..
T Consensus        77 ~~~~d~--~~----~~~~~~~v~~~P~~~liD~~G~i~~~  110 (136)
T d1z5ye1          77 LSLFDG--DG----MLGLDLGVYGAPETFLIDGNGIIRYR  110 (136)
T ss_dssp             EEEEES--SC----HHHHHHTCCSBSEEEEECTTSCEEEE
T ss_pred             eeeccc--ch----hHHHhcccCCcceEEEEcCCCEEEEE
Confidence            333322  11    24556999999999999999999854

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=98.58  E-value=1.6e-07  Score=88.31  Aligned_cols=109  Identities=8%  Similarity=0.067  Sum_probs=78.8

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhh---HHHHHHhhcC
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQA---LDKFKNLQKR  391 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dd---e~~F~~~~~~  391 (658)
                      ..+|+.+.+++++||.|+|.|-+. |||+|  +.+.|.++|++.+  ++..+|.|...|....-.+.   -.+|.. ...
T Consensus        19 d~~G~~~~Lsd~kGk~vvl~Fwat-wCp~C~~~~p~l~~l~~~y~--~~v~~v~i~snd~~~~~~~~~e~~~~~~~-~~~   94 (187)
T d2cvba1          19 DPRGGRYRLSQFHEPLLAVVFMCN-HCPYVKGSIGELVALAERYR--GKVAFVGINANDYEKYPEDAPEKMAAFAE-EHG   94 (187)
T ss_dssp             CTTSCEEEGGGCCSSEEEEEEECS-SCHHHHTTHHHHHHHHHHTT--TTEEEEEEECCCTTTCGGGSHHHHHHHHH-HHT
T ss_pred             cCCCCEEEHHHhCCCeEEEEEeCC-CCccchhhhhhhhhhhhhcc--ccceeeeeeccccccccccchHHHHHHHH-HhC
Confidence            367889999999999999999999 99864  5788999999986  45888887653322222222   222333 345


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccc
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQN  436 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~n  436 (658)
                      ++|..+.-++   .    .+.+.|++.+.|..+++|++|+++-.=
T Consensus        95 ~~~p~l~D~~---~----~~~~~~~v~~~P~~~liD~~G~i~y~G  132 (187)
T d2cvba1          95 IFFPYLLDET---Q----EVAKAYRALRTPEVFLFDERRLLRYHG  132 (187)
T ss_dssp             CCSCEEECSS---S----HHHHHTTCCEESEEEEECTTCBEEEEE
T ss_pred             Ccceeeechh---h----hhcccccccceeeEEEEcCCCeEEEEe
Confidence            6776665443   2    344569999999999999999998653

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.45  E-value=3.8e-07  Score=81.04  Aligned_cols=105  Identities=9%  Similarity=0.107  Sum_probs=74.8

Q ss_pred             CCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHh--hcCCCc
Q 046837          319 TRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNL--QKRMPW  394 (658)
Q Consensus       319 ~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~--~~~MPW  394 (658)
                      +|..+..+.++||.|+|+|-+. ||++  .+++.|.++|++.+  ++.++|.|.+.+.  +.+.+......+  ...+||
T Consensus        18 ng~~~~~~~~~~k~vvl~f~a~-~C~~C~~~~p~l~~l~~~~~--~~~~~i~v~~~~~--~~~~~~~~~~~~~~~~~~~~   92 (143)
T d2b5xa1          18 NGEVTREQLIGEKPTLIHFWSI-SCHLCKEAMPQVNEFRDKYQ--DQLNVVAVHMPRS--EDDLDPGKIKETAAEHDITQ   92 (143)
T ss_dssp             SCCCCHHHHTTTSCEEEEEECT-TCHHHHHHHHHHHHHHHHHT--TTSEEEEEECCCS--TTTSSHHHHHHHHHHTTCCS
T ss_pred             CCeEecHHHhCCCEEEEEEEcC-CCcchhhhhhhhhhhhhhhh--ccccceeEEeecc--ccccchhhhhhHHHhhccCc
Confidence            4556788889999999999999 9976  46778999999986  4688999987431  111133333332  235676


Q ss_pred             eeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          395 YSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       395 yAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      ..+--++   .    .+.+.|++.+.|+.+++|++|+++..
T Consensus        93 p~~~D~~---~----~~~~~~~v~~~P~~~~id~~G~i~~~  126 (143)
T d2b5xa1          93 PIFVDSD---H----ALTDAFENEYVPAYYVFDKTGQLRHF  126 (143)
T ss_dssp             CEEECSS---C----HHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred             cccccCc---c----chHHHcCCCcCCEEEEECCCCEEEEE
Confidence            5553222   2    34556999999999999999999865

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.44  E-value=7.6e-07  Score=81.65  Aligned_cols=111  Identities=18%  Similarity=0.272  Sum_probs=75.5

Q ss_pred             cCCCCcEEecccccCcEEEEEEecCCCCC---hHHHHHHHHHHHHhcC-CCCeeEEEEecccCCCcchhhH---HHHHHh
Q 046837          316 DGETRTTVQIHVLKKKHVLLLISRPDDIS---QEEILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQAL---DKFKNL  388 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfSa~~~~~---~~~~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~dde---~~F~~~  388 (658)
                      -..+|+.|+.++++||.|+|+|-.. |||   +..+..|.++|++++. ..++++|+||+ |   ++.|..   ++|.+.
T Consensus        17 ~d~~G~~vsl~d~~Gk~vvl~F~~t-~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isi-D---p~~Dtp~~l~~y~~~   91 (172)
T d1xzoa1          17 QNQDGKNVSLESLKGEVWLADFIFT-NCETICPPMTAHMTDLQKKLKAENIDVRIISFSV-D---PENDKPKQLKKFAAN   91 (172)
T ss_dssp             ECTTSCEEETGGGTTCCEEEEEECS-CCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEES-C---TTTCCHHHHHHHHTT
T ss_pred             EcCCCCEEcHHHhCCCEEEEEEecc-cccccccccchhhhhhhhhhcccccccccccccc-c---cccchHHHHHHHHHH
Confidence            3568889999999999999999998 884   5678889999999964 46899999998 4   344433   344432


Q ss_pred             hc--CCCceeecCCCCCcHHHHHHHHHhhcc-CC----------ceEEEEECCCCcee
Q 046837          389 QK--RMPWYSIQDPAMIQPAVIKYVKEEWKY-SK----------KAIIVSVDPQGRIL  433 (658)
Q Consensus       389 ~~--~MPWyAVpf~~~i~~~~~r~ike~f~~-~~----------iP~LVvL~pqGkv~  433 (658)
                      +.  ...|-.+--++  .....++....|.. .+          .|.++++||+|+++
T Consensus        92 ~~~~~~~w~~lt~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~  147 (172)
T d1xzoa1          92 YPLSFDNWDFLTGYS--QSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVL  147 (172)
T ss_dssp             SCCCGGGEEEEBCSC--HHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEE
T ss_pred             hccccccceeeccch--HHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEE
Confidence            21  12365443322  22334444444433 23          36899999999986

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.3e-06  Score=76.69  Aligned_cols=108  Identities=9%  Similarity=0.151  Sum_probs=73.7

Q ss_pred             CCCcEEecccccCcEEEEEEecCCCCCh---HHHHHHHHHHHHhcCC---CCeeEEEEecccCCCcchhhHHHHH--Hhh
Q 046837          318 ETRTTVQIHVLKKKHVLLLISRPDDISQ---EEILFLSNMYKDLKES---KECRIVWLPIVDGSIDRQQALDKFK--NLQ  389 (658)
Q Consensus       318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~---~~~~~L~~iY~~lk~~---~~fEIVwIpivD~s~~W~dde~~F~--~~~  389 (658)
                      .+|+.|+.++|+||.|+|+|-.. |||.   .....|.++++++...   ..+.++.++..+   + .+..+...  ...
T Consensus         8 ~~G~~vsl~d~~GK~vll~F~~t-~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~   82 (160)
T d1wp0a1           8 HTGERKTDKDYLGQWLLIYFGFT-HCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDP---E-RDTKEAIANYVKE   82 (160)
T ss_dssp             TTSCEEEGGGGTTSEEEEEEECT-TCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCT---T-TCCHHHHHHHHHT
T ss_pred             CCCCEEcHHHhCCCEEEEEEECC-CCccccccchHHHHHHHHHhhcccccccccccccccCC---C-cccHHHHHHHHhh
Confidence            47789999999999999999999 9963   4566799999998543   455666666532   1 12222222  234


Q ss_pred             cCCCceeecCCCCCcHHHHHHHHHhhccCC---------------ceEEEEECCCCceec
Q 046837          390 KRMPWYSIQDPAMIQPAVIKYVKEEWKYSK---------------KAIIVSVDPQGRILN  434 (658)
Q Consensus       390 ~~MPWyAVpf~~~i~~~~~r~ike~f~~~~---------------iP~LVvL~pqGkv~~  434 (658)
                      ...+|..++-.    ......+...|.+..               .|.++++||+|+++.
T Consensus        83 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~  138 (160)
T d1wp0a1          83 FSPKLVGLTGT----REEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLD  138 (160)
T ss_dssp             TCTTCEEEECC----HHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEE
T ss_pred             cCCCcccccCc----hHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEE
Confidence            56677776653    344455566666443               358899999999974

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.14  E-value=2e-06  Score=78.57  Aligned_cols=111  Identities=15%  Similarity=0.151  Sum_probs=74.1

Q ss_pred             ccCCCCcEEecccccCcEEEEEE-ecCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHH-Hhhc
Q 046837          315 VDGETRTTVQIHVLKKKHVLLLI-SRPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFK-NLQK  390 (658)
Q Consensus       315 ~~g~~~~kV~Is~L~gK~VlLyf-Sa~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~-~~~~  390 (658)
                      +-..+|++|++++++||.|.|+| .+. |||  ..+++.|.+.|++++ +..++|+-||.++     .+...+|. ....
T Consensus        18 l~d~~g~~vsLsd~~GK~vVl~F~p~~-~c~~C~~e~~~l~~~~~~~~-~~~~~v~~is~d~-----~~~~~~~~~~~~~   90 (167)
T d1e2ya_          18 MPNGTFKKVSLSSYKGKYVVLFFYPMD-FTFVCPTEIIQFSDDAKRFA-EINTEVISCSCDS-----EYSHLQWTSVDRK   90 (167)
T ss_dssp             CSSSCEEEEEGGGGTTSEEEEEECSCS-SCSSCCHHHHHHHHTHHHHH-TTTEEEEEEESSC-----HHHHHHHHHSCGG
T ss_pred             ccCCCCcEEeHHHHCCCeEEEEEcccc-cccccchhhHHHHHHHHHhh-cCceEEEeecCCc-----HHhHHHHHhhHHH
Confidence            34557888999999999988888 588 985  567888999999996 4578999999732     12444443 3333


Q ss_pred             CCCceeecCCCCCcHHHHHHHHHhhcc----CC--ceEEEEECCCCceec
Q 046837          391 RMPWYSIQDPAMIQPAVIKYVKEEWKY----SK--KAIIVSVDPQGRILN  434 (658)
Q Consensus       391 ~MPWyAVpf~~~i~~~~~r~ike~f~~----~~--iP~LVvL~pqGkv~~  434 (658)
                      ..+=+.+||+-+.|..  +.+.+.|++    .+  .|+..|||++|++..
T Consensus        91 ~~~~~~~~~~~l~d~~--~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~  138 (167)
T d1e2ya_          91 KGGLGPMAIPMLADKT--KAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQ  138 (167)
T ss_dssp             GTCCCCCSSCEEECTT--CHHHHHHTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             hcccccccccccccch--hHHHHHcCCCcccCCCceeEEEEECCCCEEEE
Confidence            3333345555433322  223333665    23  468899999999843

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=98.06  E-value=1.1e-05  Score=74.20  Aligned_cols=108  Identities=16%  Similarity=0.191  Sum_probs=74.4

Q ss_pred             cccCCCCcEEecccccCcEEEEEEecCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh--
Q 046837          314 LVDGETRTTVQIHVLKKKHVLLLISRPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ--  389 (658)
Q Consensus       314 l~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~--  389 (658)
                      +..|.++++|++++++||.|.|+|=..+|||  ..+++.|.+.|++++ +.+++||-||.++     -+....|-+-+  
T Consensus        15 ~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~-~~g~~vv~IS~D~-----~~~~~~~~~~~~~   88 (166)
T d1we0a1          15 FQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELK-KLGVEVYSVSTDT-----HFVHKAWHENSPA   88 (166)
T ss_dssp             ECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHH-HTTEEEEEEESSC-----HHHHHHHHHSCHH
T ss_pred             ecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhc-ccceEEEeccccc-----HHHHHHHhhhhhh
Confidence            5567788899999999998777775443885  467888999999996 3589999999832     11334554322  


Q ss_pred             -cCCCceeecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceec
Q 046837          390 -KRMPWYSIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILN  434 (658)
Q Consensus       390 -~~MPWyAVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~  434 (658)
                       ..+|...+..++   .++.+    .|++.      ..|...|+||+|++..
T Consensus        89 ~~~~~fpll~D~~---~~v~~----~ygv~~~~~~~~~r~tfvID~~G~I~~  133 (166)
T d1we0a1          89 VGSIEYIMIGDPS---QTISR----QFDVLNEETGLADRGTFIIDPDGVIQA  133 (166)
T ss_dssp             HHTCCSEEEECTT---CHHHH----HTTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             hcccccccccCcc---cHHHH----HhCCCccccCcccceEEEECCCCcEEE
Confidence             245655554443   23444    36653      4577999999999954

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.01  E-value=9.1e-06  Score=74.18  Aligned_cols=105  Identities=15%  Similarity=0.201  Sum_probs=73.4

Q ss_pred             cCCCCcEEecccccCcEEEEEEe-cCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc--
Q 046837          316 DGETRTTVQIHVLKKKHVLLLIS-RPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK--  390 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfS-a~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~--  390 (658)
                      .+.+++.+.+++++||.|.|+|- +. |||  ..++..|.+.|++++. .+.+||.|+..+     .+...+|..-+.  
T Consensus        30 ~~~~~~~~~l~d~~GK~vvl~f~p~~-~~p~C~~~~~~~~~~~~~~~~-~g~~vv~is~d~-----~~~~~~~~~~~~~~  102 (169)
T d2bmxa1          30 PGDYFTTITSDEHPGKWRVVFFWPKD-FTFVCPTEIAAFSKLNDEFED-RDAQILGVSIDS-----EFAHFQWRAQHNDL  102 (169)
T ss_dssp             GGGGEEEEETTSSTTCEEEEEECSCT-TSCCCHHHHHHHHHTHHHHHT-TTEEEEEEESSC-----HHHHHHHHHHCTTG
T ss_pred             ccccccEeeHHHHCCCeEEEEEecCC-CCccccccccccccccccccc-cCcceeeccccc-----hhhhhhhccccccc
Confidence            34456789999999999888875 77 985  4667789999999974 457999999842     125556654433  


Q ss_pred             -CCCceeecCCCCCcHHHHHHHHHhhcc-----CCceEEEEECCCCceec
Q 046837          391 -RMPWYSIQDPAMIQPAVIKYVKEEWKY-----SKKAIIVSVDPQGRILN  434 (658)
Q Consensus       391 -~MPWyAVpf~~~i~~~~~r~ike~f~~-----~~iP~LVvL~pqGkv~~  434 (658)
                       ..|..-+.-++   .+..    +.|++     ...|+.+|+|++|++..
T Consensus       103 ~~~~f~ll~D~~---~~v~----~~ygv~~~~~~~~r~~fvID~~G~I~~  145 (169)
T d2bmxa1         103 KTLPFPMLSDIK---RELS----QAAGVLNADGVADRVTFIVDPNNEIQF  145 (169)
T ss_dssp             GGCCSCEEECTT---SHHH----HHHTCBCTTSSBCEEEEEECTTSBEEE
T ss_pred             ccceEEEEeccH---HHHH----HHcCCCccCCccceeEEEEcCCCEEEE
Confidence             24444443333   2333    34776     57899999999999964

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=7.8e-05  Score=64.62  Aligned_cols=112  Identities=11%  Similarity=0.078  Sum_probs=70.1

Q ss_pred             CCCCcEEecccccCcEEEEEEecCCCCCh-H--HHHHHHHHHHHhcC--CCCeeEEEEecccCCCcchhhHHHHHHhhcC
Q 046837          317 GETRTTVQIHVLKKKHVLLLISRPDDISQ-E--EILFLSNMYKDLKE--SKECRIVWLPIVDGSIDRQQALDKFKNLQKR  391 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~-~--~~~~L~~iY~~lk~--~~~fEIVwIpivD~s~~W~dde~~F~~~~~~  391 (658)
                      ..+|+.|+.++++||.|+++|-.. |||. |  ....+...+.....  ...+.+++++..+ ..+. .+..........
T Consensus        13 d~~G~~vsl~~~~GK~vli~f~~t-~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~   89 (169)
T d2b7ka1          13 DMYGNEFTEKNLLGKFSIIYFGFS-NCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDP-ARDS-PAVLKEYLSDFH   89 (169)
T ss_dssp             ETTSCEEEGGGGTTSCEEEEEECT-TCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCT-TTCC-HHHHHHHHTTSC
T ss_pred             eCCCCEECHHHHCCCEEEEEEecc-ccCCcccchhhhhhhhhhhccccccccceeeeecccc-ccCc-hhhhhhhhcccc
Confidence            357889999999999999999999 8864 3  23346656655543  4677888888743 1111 122223333445


Q ss_pred             CCceeecCCCCCcHHHHHHHH----------------HhhccCCceEEEEECCCCceecc
Q 046837          392 MPWYSIQDPAMIQPAVIKYVK----------------EEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ik----------------e~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      -+|..+....    .......                .-+.+.+.|.++++||+|+++..
T Consensus        90 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~  145 (169)
T d2b7ka1          90 PSILGLTGTF----DEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA  145 (169)
T ss_dssp             TTCEEEECCH----HHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred             ccccccccch----hhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEE
Confidence            5666666543    2222221                22456778999999999999854

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.83  E-value=1.8e-05  Score=75.02  Aligned_cols=111  Identities=14%  Similarity=0.164  Sum_probs=74.6

Q ss_pred             ccCCCCcEEecccccCcEEEEEEe-cCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHH-hhc
Q 046837          315 VDGETRTTVQIHVLKKKHVLLLIS-RPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKN-LQK  390 (658)
Q Consensus       315 ~~g~~~~kV~Is~L~gK~VlLyfS-a~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~-~~~  390 (658)
                      +...+|++|++++++||.|.|+|= +. ||+.  .|+..|.+.|++.+ +.+.+|+.||.++     .+..+.|.+ ...
T Consensus        18 l~d~~g~~vsLsd~~GK~vVL~FyP~~-~t~~C~~E~~~f~~~~~~f~-~~g~~VlgIS~Ds-----~~s~~~~~~~~~~   90 (194)
T d1uula_          18 MPNGTFKKVALTSYKGKWLVLFFYPMD-FTFVCPTEICQFSDRVKEFS-DIGCEVLACSMDS-----EYSHLAWTSIERK   90 (194)
T ss_dssp             CTTSCEEEEEGGGGTTSEEEEEECSCT-TCSHHHHHHHHHHHTHHHHH-TTTEEEEEEESSC-----HHHHHHHHHSCGG
T ss_pred             ccCCCCcEEehHHhCCCeEEEEEEeCC-ccccchhhhhHHHhhhhhhc-cCceEEEEEecCc-----hhhhhhhhhhhhh
Confidence            334578889999999999888887 66 8876  56667999999986 5689999999732     125556643 333


Q ss_pred             CCCceeecCCCCCcHHHHHHHHHhhcc------CCceEEEEECCCCceec
Q 046837          391 RMPWYSIQDPAMIQPAVIKYVKEEWKY------SKKAIIVSVDPQGRILN  434 (658)
Q Consensus       391 ~MPWyAVpf~~~i~~~~~r~ike~f~~------~~iP~LVvL~pqGkv~~  434 (658)
                      ...=..+|||-+.|..  +.+.+.|++      ...|...|+||+|++..
T Consensus        91 ~~~~~~l~fpllsD~~--~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~  138 (194)
T d1uula_          91 RGGLGQMNIPILADKT--KCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQ  138 (194)
T ss_dssp             GTCCCSCSSCEEECTT--CHHHHHHTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             hccccCCCcceeeCCc--chHHHHcCCeeccCCceEEEEEEECCCCeEEE
Confidence            2222344454333321  223344666      23578999999999854

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.81  E-value=5.4e-05  Score=68.75  Aligned_cols=104  Identities=14%  Similarity=0.186  Sum_probs=74.0

Q ss_pred             CCCCcEEecccccCcEEEEEEe-cCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh----
Q 046837          317 GETRTTVQIHVLKKKHVLLLIS-RPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ----  389 (658)
Q Consensus       317 g~~~~kV~Is~L~gK~VlLyfS-a~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~----  389 (658)
                      +..++.|++++++||.|.|||= +. |||.  .+...+.+.|++.+ +.+.+|+-||.+.     ....++|.+-.    
T Consensus        13 ~~~~~~vsL~d~~Gk~vVL~Fyp~~-~tp~C~~e~~~~~~~~~~~~-~~~~~vigIS~d~-----~~~~~~~~~~~~~~~   85 (158)
T d1zyea1          13 SGEFKEISLDDFKGKYLVLFFYPLD-FTFVCPTEIIAFSDKASEFH-DVNCEVVAVSVDS-----HFSHLAWINTPRKNG   85 (158)
T ss_dssp             SSSEEEEEGGGGTTSEEEEEECSCT-TCSSSHHHHHHHHHHHHHHH-HTTEEEEEEESSC-----HHHHHHHHTSCGGGT
T ss_pred             CCCccEEeHHHhCCCeEEEEEeehh-cCCccccchhhHHHhHHHhh-cCCceEEeccCcC-----HHHHHHHHhhhHhhc
Confidence            4567789999999999888888 55 8865  56667999999986 3578999999732     12666775432    


Q ss_pred             --cCCCceeecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceec
Q 046837          390 --KRMPWYSIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILN  434 (658)
Q Consensus       390 --~~MPWyAVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~  434 (658)
                        .++|+.-+--++   ..    +.+.|++.      .+|...|+||+|++..
T Consensus        86 ~~~~~~f~llsD~~---~~----~~~~ygv~~~~~g~~~R~tfvID~~G~I~~  131 (158)
T d1zyea1          86 GLGHMNIALLSDLT---KQ----ISRDYGVLLEGPGLALRGLFIIDPNGVIKH  131 (158)
T ss_dssp             CCCSCSSEEEECTT---SH----HHHHTTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             cccccccccccccc---cH----HHHHHHhccccCCccccEEEEECCCCEEEE
Confidence              355666665543   12    34446654      4678999999999964

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.81  E-value=2.2e-05  Score=69.99  Aligned_cols=104  Identities=15%  Similarity=0.257  Sum_probs=72.1

Q ss_pred             CCCCcEEecccc--cCcEEEEEEe-cCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcC
Q 046837          317 GETRTTVQIHVL--KKKHVLLLIS-RPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKR  391 (658)
Q Consensus       317 g~~~~kV~Is~L--~gK~VlLyfS-a~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~  391 (658)
                      +.+|+.++++++  +||.|.|+|= +. |||.|  +++.|.+.|++++ +...++|-|+..+     .+..++|.+. ..
T Consensus        15 ~~~G~~~~Lsd~~~~gk~vvl~f~~~~-~cp~C~~~~~~l~~~~~~~~-~~~~~vv~is~d~-----~~~~~~~~~~-~~   86 (160)
T d2cx4a1          15 NQDFEPVNLYEVLKRGRPAVLIFFPAA-FSPVCTKELCTFRDKMAQLE-KANAEVLAISVDS-----PWCLKKFKDE-NR   86 (160)
T ss_dssp             CTTSCCEEHHHHHTTSSCEEEEECSCT-TCHHHHHHHHHHHHTCTTTS-TTCCEEEEEESSC-----HHHHHHHHHH-HT
T ss_pred             CCCCCEEehHHHhhCCCEEEEEecccc-cCCchhhhhhhhhccccccc-ccccccccccccc-----hhhhhhhccc-ce
Confidence            467888999998  7888777764 77 99764  5667888888875 3568899998732     1245555543 46


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhcc----------CCceEEEEECCCCceecc
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKY----------SKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~----------~~iP~LVvL~pqGkv~~~  435 (658)
                      +||.-+..++   .+..    +.|++          ...|..+++||+|++...
T Consensus        87 ~~~~~l~D~~---~~~~----~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~  133 (160)
T d2cx4a1          87 LAFNLLSDYN---REVI----KLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYK  133 (160)
T ss_dssp             CSSEEEECTT---SHHH----HHTTCEEEEETTEEEEECCEEEEECTTSBEEEE
T ss_pred             eeEEEeecCC---cchH----HHcCccccccccccccceeeEEEEcCCCEEEEE
Confidence            7776666544   2333    34665          245789999999999754

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=0.00014  Score=64.59  Aligned_cols=105  Identities=10%  Similarity=0.085  Sum_probs=69.0

Q ss_pred             CCCCcEEecccccCc-E-EEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837          317 GETRTTVQIHVLKKK-H-VLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM  392 (658)
Q Consensus       317 g~~~~kV~Is~L~gK-~-VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M  392 (658)
                      ..+|++|.+++++|| . |+++|.+. |||.  .+++.|.+.|++.+ ..+++|+-|+.++     -+...+|.+-. .+
T Consensus        15 d~~G~~~slsd~~g~~~vvl~~~~~~-~cp~C~~e~~~l~~~~~~~~-~~~~~vi~vs~d~-----~~~~~~~~~~~-~~   86 (153)
T d1xvwa1          15 DQNQQLVTLRGYRGAKNVLLVFFPLA-FTGICQGELDQLRDHLPEFE-NDDSAALAISVGP-----PPTHKIWATQS-GF   86 (153)
T ss_dssp             CTTSCEEEGGGGTTTCEEEEEECSCT-TSSHHHHHHHHHHHTGGGTS-SSSEEEEEEESCC-----HHHHHHHHHHH-TC
T ss_pred             CCCCCEEeHHHHcCCCcEEEEecccc-cccchhhhhhhhhhhhhhhc-ccccccccccchh-----hhHHHHHhhhh-cc
Confidence            467888999999996 4 55556678 9975  56778999999875 5679999999732     12555675533 55


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccC----Cc--eEEEEECCCCceec
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYS----KK--AIIVSVDPQGRILN  434 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~----~i--P~LVvL~pqGkv~~  434 (658)
                      ||..+--.+. +.+    +.+.|++-    ++  |+.+|||++|++..
T Consensus        87 ~~~~l~~~~~-~~~----~~~~ygv~~~~~g~~~r~tfvID~~G~I~~  129 (153)
T d1xvwa1          87 TFPLLSDFWP-HGA----VSQAYGVFNEQAGIANRGTFVVDRSGIIRF  129 (153)
T ss_dssp             CSCEEECTTT-TTH----HHHHTTCEETTTTEECSEEEEECTTSBEEE
T ss_pred             ceeEEecccc-cch----hHHHhhhhhhccCceeeeEEEECCCCEEEE
Confidence            6554422211 122    33446652    33  46889999999953

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.00022  Score=66.96  Aligned_cols=114  Identities=10%  Similarity=0.059  Sum_probs=75.3

Q ss_pred             CCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccC--CCcchh-hHHHHHHhhcCCC
Q 046837          319 TRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDG--SIDRQQ-ALDKFKNLQKRMP  393 (658)
Q Consensus       319 ~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~--s~~W~d-de~~F~~~~~~MP  393 (658)
                      +|+.|+++.++||.|++.+-|. ||+.+  +.+.|+++|++.+ +..|+|+-+|..+-  ..+.++ +-..|-.+...-.
T Consensus        13 ~g~~vsL~~ykGKvvLivN~AS-~Cg~t~~~y~~L~~L~~ky~-~~g~~Il~fP~nqF~~qE~~~~~ei~~f~~~~~~~~   90 (184)
T d2f8aa1          13 GGEPVSLGSLRGKVLLIENVAS-LGGTTVRDYTQMNELQRRLG-PRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGG   90 (184)
T ss_dssp             CSSCEEGGGGTTSEEEEEEECS-SSTTHHHHHHHHHHHHHHHG-GGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCT
T ss_pred             CCCEecHHHcCCCEEEEEEecc-cCCcchhhhHHHHHhhhhhc-ccceeEEEeeccccccccccchhhhhhhhheecccc
Confidence            4677999999999999999999 99754  5788999999986 35799999998642  122333 3334433321111


Q ss_pred             ceeecCC--CCC------cHHHHHHHHHhhc--------cCCce-----------------EEEEECCCCceec
Q 046837          394 WYSIQDP--AMI------QPAVIKYVKEEWK--------YSKKA-----------------IIVSVDPQGRILN  434 (658)
Q Consensus       394 WyAVpf~--~~i------~~~~~r~ike~f~--------~~~iP-----------------~LVvL~pqGkv~~  434 (658)
                      =|.+.||  .++      ..++-++|++...        ..+.|                 +=.++|++|+++.
T Consensus        91 ~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~G~vv~  164 (184)
T d2f8aa1          91 GFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLR  164 (184)
T ss_dssp             TCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEE
T ss_pred             ccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCCCCEEE
Confidence            1222331  111      2367889987643        23444                 4589999999974

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=97.55  E-value=0.00013  Score=66.40  Aligned_cols=109  Identities=12%  Similarity=0.081  Sum_probs=70.8

Q ss_pred             cCCCCcEEecccccCcEEEEEEecCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837          316 DGETRTTVQIHVLKKKHVLLLISRPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP  393 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfSa~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP  393 (658)
                      -+.+|+.|.+++++||.|.|+|=..+|||  ..++..|.+.|++++   +.+++.||..+     -+..+.|..-..-.+
T Consensus        28 ~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~---~~~vi~iS~d~-----~~~~~~~~~~~~~~~   99 (164)
T d1q98a_          28 VGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS---NTIVLCISADL-----PFAQARFCGAEGIEN   99 (164)
T ss_dssp             ECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST---TEEEEEEESSC-----HHHHTTCTTTTTCTT
T ss_pred             ECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc---cceEEeecCCc-----HHHHHHHHHHhCCcc
Confidence            35567889999999999888888663664  467788999999985   58999999732     225556655444444


Q ss_pred             ceeecCCCCCcHHHHHHHH---HhhccCCc--eEEEEECCCCceec
Q 046837          394 WYSIQDPAMIQPAVIKYVK---EEWKYSKK--AIIVSVDPQGRILN  434 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ik---e~f~~~~i--P~LVvL~pqGkv~~  434 (658)
                      +..+.-..  +....+..-   +...+.|.  |...|+|++|++..
T Consensus       100 ~~~~~~~~--~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y  143 (164)
T d1q98a_         100 AKTVSTFR--NHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLH  143 (164)
T ss_dssp             EEEEECTT--CTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEE
T ss_pred             cccccccc--chhHHHhhceecccCccccCcccEEEEECCCCEEEE
Confidence            54444322  223222211   11112333  78999999999975

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00025  Score=64.37  Aligned_cols=103  Identities=9%  Similarity=0.061  Sum_probs=67.7

Q ss_pred             cCCCCcEEecccccCcEEEEEEe-cCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc-C
Q 046837          316 DGETRTTVQIHVLKKKHVLLLIS-RPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK-R  391 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfS-a~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~-~  391 (658)
                      ...+|+.|++++++||.|.|+|= +. |||.  .+++.|.+.|.+.   .+.++|.||..+     -+..++|..... .
T Consensus        30 ~~~~g~~vsLsd~~GK~vvl~f~~~~-~~p~C~~~~~~l~~~~~~~---~~~~vv~Is~d~-----~~~~~~~~~~~~~~  100 (164)
T d1qxha_          30 VAKDLSDVTLGQFAGKRKVLNIFPSI-DTGVCAASVRKFNQLATEI---DNTVVLCISADL-----PFAQSRFCGAEGLN  100 (164)
T ss_dssp             ECTTSCEEEGGGGTTSEEEEEECSCS-CSSCCCHHHHHHHHHHHTS---TTEEEEEEESSC-----HHHHTTCCSSTTCT
T ss_pred             ECCCCCEEeHHHhCCCeEEEEEecch-hcccchHHHHHHHHHHHhh---ccceeeeEEcCC-----HHHHHHHHHHhCCC
Confidence            34678899999999999887664 55 8854  5677788888754   479999999732     124455544332 3


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhcc-------CC--ceEEEEECCCCceec
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKY-------SK--KAIIVSVDPQGRILN  434 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~-------~~--iP~LVvL~pqGkv~~  434 (658)
                      -|-++..+++   ...    .+.|++       .|  .|...|+|++|++..
T Consensus       101 ~~~~~~~d~~---~~~----~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y  145 (164)
T d1qxha_         101 NVITLSTFRN---AEF----LQAYGVAIADGPLKGLAARAVVVIDENDNVIF  145 (164)
T ss_dssp             TEEEEECTTC---HHH----HHHTTCBBCSSTTTTSBCCEEEEECTTSBEEE
T ss_pred             cceeeccccc---hhh----HHhcCeEeecCcccCcccCEEEEEcCCCEEEE
Confidence            3344444443   222    333554       22  378999999999975

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=97.42  E-value=0.00019  Score=65.94  Aligned_cols=100  Identities=15%  Similarity=0.164  Sum_probs=69.3

Q ss_pred             cEEecccccCc-EEEEEEe-cCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc------
Q 046837          321 TTVQIHVLKKK-HVLLLIS-RPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK------  390 (658)
Q Consensus       321 ~kV~Is~L~gK-~VlLyfS-a~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~------  390 (658)
                      ..+++++++|| .|.|+|= +. |||.  .++..+.+.|++++ +...+||-||.++     .+.+.+|.+...      
T Consensus        23 ~~~~Lsd~~gk~~vvl~FyP~~-~tp~C~~e~~~~~~~~~~f~-~~g~~Vvgis~d~-----~~~~~~~~~~~~~~~~~~   95 (170)
T d1zofa1          23 EHFELSKNLGKNGVILFFWPKD-FTFVCPTEIIAFDKRVKDFH-EKGFNVIGVSIDS-----EQVHFAWKNTPVEKGGIG   95 (170)
T ss_dssp             EEEETTTSCCSSEEEEEECSCT-TCSSCCTHHHHHHHTHHHHH-HTTEEEEEEESSC-----HHHHHHHHTSCGGGTCCC
T ss_pred             eEEEeHHHcCCCEEEEEEEccc-cCCcCHHHHHHHHHhHHhhc-cCCeeEecccccc-----hhhHHHHHhhhhhccccc
Confidence            57999999997 4777774 66 8854  57778999999986 4579999999732     126666765442      


Q ss_pred             CCCceeecCCCCCcHHHHHHHHHhhccC-----CceEEEEECCCCceec
Q 046837          391 RMPWYSIQDPAMIQPAVIKYVKEEWKYS-----KKAIIVSVDPQGRILN  434 (658)
Q Consensus       391 ~MPWyAVpf~~~i~~~~~r~ike~f~~~-----~iP~LVvL~pqGkv~~  434 (658)
                      .+|+..+--++       +.+.+.|++.     ..|...||||+|++..
T Consensus        96 ~~~~~~l~D~~-------~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~  137 (170)
T d1zofa1          96 QVSFPMVADIT-------KSISRDYDVLFEEAIALRGAFLIDKNMKVRH  137 (170)
T ss_dssp             CCSSCEEECTT-------SHHHHHTTCEETTTEECEEEEEEETTTEEEE
T ss_pred             Ccccccccccc-------cHHHHHcCCCccccceeEEEEEEcCCCeEEE
Confidence            34444443333       2333446663     4688999999999963

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.39  E-value=0.00032  Score=65.88  Aligned_cols=102  Identities=14%  Similarity=0.174  Sum_probs=71.4

Q ss_pred             CCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc---CCC
Q 046837          319 TRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK---RMP  393 (658)
Q Consensus       319 ~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~---~MP  393 (658)
                      ...+|.+++++||.|.|||=-.+|||.  .|+..+.+.|++.+ +.+.+|+.||.++     -+..++|-+-..   .+|
T Consensus        19 ~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~-~~~~~v~gIS~Ds-----~~sh~~f~~~~~~~~~~~   92 (186)
T d1n8ja_          19 EFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQ-KLGVDVYSVSTDT-----HFTHKAWHSSSETIAKIK   92 (186)
T ss_dssp             EEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHH-HTTEEEEEEESSC-----HHHHHHHHHHCTTGGGCC
T ss_pred             eeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcc-cccEEEEeccccC-----HHHHHHHhcccccccccc
Confidence            345799999999999999985536754  45667999999986 4578999999732     126677876554   355


Q ss_pred             ceeecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCcee
Q 046837          394 WYSIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRIL  433 (658)
Q Consensus       394 WyAVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~  433 (658)
                      ...+--++       +.+.+.|++.      ..|...|+||+|+|.
T Consensus        93 fpllsD~~-------~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir  131 (186)
T d1n8ja_          93 YAMIGDPT-------GALTRNFDNMREDEGLADRATFVVDPQGIIQ  131 (186)
T ss_dssp             SEEEECTT-------SHHHHHTTCEETTTTEECEEEEEECTTSBEE
T ss_pred             ccccccHH-------HHHHHHhCCCcccCCcceeeEEEECchheEE
Confidence            54444433       2344447763      357899999999984

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=0.00013  Score=61.88  Aligned_cols=75  Identities=15%  Similarity=0.028  Sum_probs=50.7

Q ss_pred             ccccCcEEEEEEecCCCCChHHHH--H---HHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCC
Q 046837          326 HVLKKKHVLLLISRPDDISQEEIL--F---LSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDP  400 (658)
Q Consensus       326 s~L~gK~VlLyfSa~~~~~~~~~~--~---L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~  400 (658)
                      ...+||.|+|.|.|. ||++|...  .   +.++++.+   .++..+-+.+.+      +                    
T Consensus        18 ~~~~gK~vlv~F~a~-wC~~C~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~------~--------------------   67 (117)
T d2fwha1          18 VEAKGKPVMLDLYAD-WCVACKEFEKYTFSDPQVQKAL---ADTVLLQANVTA------N--------------------   67 (117)
T ss_dssp             HHHTTSCEEEEEECT-TCHHHHHHHHHTTTSHHHHHHT---TTSEEEEEECTT------C--------------------
T ss_pred             HHcCCCeEEEEEecc-cCCcccccchhHHhHHHHHHhc---cceEEEeccccc------c--------------------
Confidence            345799999999999 99887532  2   35555554   344444444311      1                    


Q ss_pred             CCCcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          401 AMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       401 ~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                          ...-+.+.+.|++++.|+++++||+|+++.
T Consensus        68 ----~~~~~~l~~~~~v~~~Pt~~~~~~~G~~~~   97 (117)
T d2fwha1          68 ----DAQDVALLKHLNVLGLPTILFFDGQGQEHP   97 (117)
T ss_dssp             ----CHHHHHHHHHTTCCSSSEEEEECTTSCBCG
T ss_pred             ----hhHHHHHHhhhehhhceEEEEEeCCCcEEe
Confidence                012234566799999999999999998764

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=0.00028  Score=64.10  Aligned_cols=53  Identities=13%  Similarity=0.095  Sum_probs=39.8

Q ss_pred             cCCCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecc
Q 046837          316 DGETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIV  372 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpiv  372 (658)
                      -..+|+.|.+++|+||.|.|+|=..+|||.  .+++.|.+.|++.    +.+||.|+.+
T Consensus        29 ~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~----g~~vv~Is~d   83 (166)
T d1xvqa_          29 TGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAAS----GATVLCVSKD   83 (166)
T ss_dssp             ECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT----TCEEEEEESS
T ss_pred             ECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhcccc----cccccccccc
Confidence            345677899999999999998876636653  5666676666654    5799999973

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.06  E-value=0.0037  Score=56.29  Aligned_cols=105  Identities=8%  Similarity=0.031  Sum_probs=68.4

Q ss_pred             ccCCCCcEEecccccCcEEEEEEe-cCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcC
Q 046837          315 VDGETRTTVQIHVLKKKHVLLLIS-RPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKR  391 (658)
Q Consensus       315 ~~g~~~~kV~Is~L~gK~VlLyfS-a~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~  391 (658)
                      +-..+|+.|++++++||.|.|+|= +. |||.|  +++.|.+.|++.   ++.++|=|+..+     .+..++|......
T Consensus        27 L~~~~g~~vsLsd~~gk~~vl~f~~~~-~~p~C~~~~~~l~~~~~~~---~~~~vv~Is~d~-----~~~~~~~~~~~~~   97 (163)
T d1psqa_          27 LTTTDLSKKSLADFDGKKKVLSVVPSI-DTGICSTQTRRFNEELAGL---DNTVVLTVSMDL-----PFAQKRWCGAEGL   97 (163)
T ss_dssp             EECTTSCEEEGGGGTTSEEEEEECSCT-TSHHHHHHHHHHHHHTTTC---TTEEEEEEESSC-----HHHHHHHHHHHTC
T ss_pred             EECCCCCEEehHHhCCcEEEEEecccc-ccccchhhHHHHHHHHHhh---cccceEEEEecc-----HHHHHHHHHHcCC
Confidence            345678899999999999777665 55 88644  455566555544   578999999732     1267778776666


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhccC----C--ceEEEEECCCCceec
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKYS----K--KAIIVSVDPQGRILN  434 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~~----~--iP~LVvL~pqGkv~~  434 (658)
                      +++..+....  +...    .+.|++.    +  .|..+|+|++|++..
T Consensus        98 ~~~~~~~~~~--~~~~----~~~ygv~~~~~~~~~Ra~fvID~~G~I~y  140 (163)
T d1psqa_          98 DNAIMLSDYF--DHSF----GRDYALLINEWHLLARAVFVLDTDNTIRY  140 (163)
T ss_dssp             TTSEEEECTT--TCHH----HHHHTCBCTTTCSBCCEEEEECTTCBEEE
T ss_pred             cceeeecccc--chhH----HHhheeecccccceeEEEEEECCCCEEEE
Confidence            6555544322  1222    2335542    2  246899999999974

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00039  Score=60.29  Aligned_cols=78  Identities=5%  Similarity=0.104  Sum_probs=53.1

Q ss_pred             ccCcEEEEEEec-------CCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeec
Q 046837          328 LKKKHVLLLISR-------PDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQ  398 (658)
Q Consensus       328 L~gK~VlLyfSa-------~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVp  398 (658)
                      -+||.|+++|.|       . ||++|.  .|.+.++.++.+  +++.++.|-+.+        ..   ++...       
T Consensus        19 ~~gk~v~v~F~a~~~~~g~s-WC~pCk~~~P~~~~l~~~~~--~~~~~~~vdv~~--------~~---~~~d~-------   77 (119)
T d1woua_          19 HNGKTIFAYFTGSKDAGGKS-WCPDCVQAEPVVREGLKHIS--EGCVFIYCQVGE--------KP---YWKDP-------   77 (119)
T ss_dssp             TTTSEEEEEEECCBCTTCCB-SCHHHHHHHHHHHHHGGGCC--TTEEEEEEECCC--------HH---HHHCT-------
T ss_pred             cCCCEEEEEEEecCCCCCCC-CChhHHHHHHHHHHHHHhcC--CceEEEEEECCC--------Cc---ccchh-------
Confidence            468999999987       6 998764  566777766654  568888888622        11   11110       


Q ss_pred             CCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          399 DPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       399 f~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                               -..+.+.|+++++|++++++..+++...
T Consensus        78 ---------~~~l~~~~~V~~iPT~i~~~~g~~l~~~  105 (119)
T d1woua_          78 ---------NNDFRKNLKVTAVPTLLKYGTPQKLVES  105 (119)
T ss_dssp             ---------TCHHHHHHCCCSSSEEEETTSSCEEEGG
T ss_pred             ---------hhhHHHhCCeEEEEEEEEEECCeEEeee
Confidence                     1234566999999999999876666543

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.83  E-value=0.00083  Score=65.43  Aligned_cols=106  Identities=16%  Similarity=0.153  Sum_probs=66.6

Q ss_pred             CCCcEEeccc---ccCcEEEEEEe-cCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcC
Q 046837          318 ETRTTVQIHV---LKKKHVLLLIS-RPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKR  391 (658)
Q Consensus       318 ~~~~kV~Is~---L~gK~VlLyfS-a~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~  391 (658)
                      .+| ++..++   ++||.|.|||= +. |||.|  |+..+.+.|+++++ .+.+||-||.++     .+....|.+-...
T Consensus        15 ~~G-~i~~~d~~~~kGk~vVLff~P~d-ftpvCttEl~~~~~~~~ef~~-~g~~vigiS~Ds-----~~sh~~w~~~~~~   86 (237)
T d2zcta1          15 DHG-VIKLPDHYVSQGKWFVLFSHPAD-FTPVCTTEFVSFARRYEDFQR-LGVDLIGLSVDS-----VFSHIKWKEWIER   86 (237)
T ss_dssp             TTE-EEEETHHHHTTTCEEEEEEESCS-SCHHHHHHHHHHHHTHHHHHH-TTEEEEEEESSC-----HHHHHHHHHHHHH
T ss_pred             CCC-CEEechHhhcCCCEEEEEEECCC-CCccCHHHHHHHHhhhhhhcc-CCcceeeccCCc-----HHHHHHHhhhhhh
Confidence            345 466655   37888776664 77 99654  67779999999873 468999999842     1244555443222


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhcc-------CCceEEEEECCCCcee
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKY-------SKKAIIVSVDPQGRIL  433 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~-------~~iP~LVvL~pqGkv~  433 (658)
                      ..-..++||-+.|.  -+.+.+.|++       ...|...|+||+|+|.
T Consensus        87 ~~~~~l~fpllsD~--~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir  133 (237)
T d2zcta1          87 HIGVRIPFPIIADP--QGTVARRLGLLHAESATHTVRGVFIVDARGVIR  133 (237)
T ss_dssp             HHCCCCCSCEEECG--GGHHHHHTTCC----CCTTCCEEEEECTTSBEE
T ss_pred             hcccccccccccCc--chHHHHHcCCccccccccceeeeEEECCCCEEE
Confidence            11123444422222  2344445776       4689999999999984

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0043  Score=58.39  Aligned_cols=110  Identities=16%  Similarity=0.150  Sum_probs=72.5

Q ss_pred             cCCCCcEEecccccCcEEEEEEe-cCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHh-hcC
Q 046837          316 DGETRTTVQIHVLKKKHVLLLIS-RPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNL-QKR  391 (658)
Q Consensus       316 ~g~~~~kV~Is~L~gK~VlLyfS-a~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~-~~~  391 (658)
                      .+.++.+|++++++||.|.|||= +. |||.|  |+..|.+.|++.+ +.+.+|+=||.++     -.....|.+- ...
T Consensus        20 ~d~~~~~v~L~d~~Gk~~vL~FyP~~-~tp~C~~e~~~~~~~~~~f~-~~g~~vigIS~D~-----~~~~~~~~~~~~~~   92 (197)
T d1qmva_          20 VDGAFKEVKLSDYKGKYVVLFFYPLD-FTFVCPTEIIAFSNRAEDFR-KLGCEVLGVSVDS-----QFTHLAWINTPRKE   92 (197)
T ss_dssp             ETTEEEEEEGGGGTTSEEEEEECSCT-TSSHHHHHHHHHHHTHHHHH-TTTEEEEEEESSC-----HHHHHHHHTSCGGG
T ss_pred             eCCCCcEEeHHHhCCCeEEEEEeccc-ccccchhhhHHHHHHHHHhc-cCCcEEEEEecCC-----HHHHHhhhcchhhh
Confidence            35567789999999999888775 66 88654  5667999999986 5689999999832     1255566542 221


Q ss_pred             CCceeecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceec
Q 046837          392 MPWYSIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILN  434 (658)
Q Consensus       392 MPWyAVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~  434 (658)
                      +-=.-++||=+.|.  -+.+.+.|++-      ..|...++||+|++..
T Consensus        93 ~~~~~~~fpll~D~--~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~  139 (197)
T d1qmva_          93 GGLGPLNIPLLADV--TRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQ  139 (197)
T ss_dssp             TCCCSCSSCEEECT--TCHHHHHTTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             cCcCCCccceEecc--chHHHHHhCCCcccCCeeeEEEEEECCCCcEEE
Confidence            11122444432222  23455557773      3588999999999843

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.48  E-value=0.006  Score=54.51  Aligned_cols=103  Identities=16%  Similarity=0.265  Sum_probs=65.8

Q ss_pred             cCCCCcEEeccccc--CcEEEEEE-ecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc
Q 046837          316 DGETRTTVQIHVLK--KKHVLLLI-SRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK  390 (658)
Q Consensus       316 ~g~~~~kV~Is~L~--gK~VlLyf-Sa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~  390 (658)
                      -+.+|+.|.+++++  ||.|.||| -+. |||.|  ++..|.+.|++++  +.+.++=|+.++     -+..++|.+-. 
T Consensus        17 ~~~~g~~~~l~~~~~k~~~vvlff~p~~-~cp~C~~~~~~~~~~~~~~~--~~~~~~~is~d~-----~~~~~~f~~~~-   87 (156)
T d2a4va1          17 LNEDNDSISLKKITENNRVVVFFVYPRA-STPGSTRQASGFRDNYQELK--EYAAVFGLSADS-----VTSQKKFQSKQ-   87 (156)
T ss_dssp             ECTTSCEEEHHHHHHHCSEEEEEECSSS-SSHHHHHHHHHHHHHHHHHT--TTCEEEEEESCC-----HHHHHHHHHHH-
T ss_pred             ECCCCCEEeeHHHcCCccEEEEEecccc-cCcchhhhhHHHHHHHHHHh--hccceeeeccch-----hhhHHhhhccc-
Confidence            34688899999995  56677776 477 99765  4567999999997  356788888621     12556776643 


Q ss_pred             CCCceeecCCCCCcHHHHHHHHHhhccCCceE-----EEEECCCCceec
Q 046837          391 RMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAI-----IVSVDPQGRILN  434 (658)
Q Consensus       391 ~MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~-----LVvL~pqGkv~~  434 (658)
                      ..|+..+.-++   .++.+.    |++.+.|.     =++++++|++.-
T Consensus        88 ~l~f~~L~D~~---~~v~~~----ygv~~~~~~~~~r~~~i~~dg~i~~  129 (156)
T d2a4va1          88 NLPYHLLSDPK---REFIGL----LGAKKTPLSGSIRSHFIFVDGKLKF  129 (156)
T ss_dssp             TCSSEEEECTT---CHHHHH----HTCBSSSSSCBCCEEEEEETTEEEE
T ss_pred             CccceeccchH---HHHHHH----cCCCccccCCeeEEEEEEECCeEEE
Confidence            46655554443   234443    76655542     233446787753

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.41  E-value=0.0044  Score=52.42  Aligned_cols=70  Identities=16%  Similarity=0.187  Sum_probs=50.0

Q ss_pred             CcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ++.|.+||.+. ||++|  +.+.|.++.++.+    ..+.+|-++.     .++.                       ..
T Consensus        26 ~~~~~v~f~~~-~C~~C~~~~p~l~~~~~~~~----~~v~~v~~~~-----~~~~-----------------------~~   72 (115)
T d1zmaa1          26 KETATFFIGRK-TCPYCRKFAGTLSGVVAETK----AHIYFINSEE-----PSQL-----------------------ND   72 (115)
T ss_dssp             TCCEEEEEECT-TCHHHHHHHHHHHHHHHHHC----CCCEEEETTC-----GGGH-----------------------HH
T ss_pred             CCCEEEEEcCC-CCccHHHHHHHHHHHHHHhh----hhhhhheeec-----cccc-----------------------cc
Confidence            67899999999 99875  4566877776664    4577777621     1222                       23


Q ss_pred             HHHHHHhhccCCceEEEEECCCCcee
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                      .+.+.+.|++++.|+|+++. +|++.
T Consensus        73 ~~~~~~~~~V~~~PTli~~~-~gk~~   97 (115)
T d1zmaa1          73 LQAFRSRYGIPTVPGFVHIT-DGQIN   97 (115)
T ss_dssp             HHHHHHHHTCCSSCEEEEEE-TTEEE
T ss_pred             ccccccccccccccEEEEEE-CCEEE
Confidence            34456779999999999996 78765

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.23  E-value=0.0036  Score=51.82  Aligned_cols=76  Identities=9%  Similarity=0.086  Sum_probs=48.1

Q ss_pred             cccccCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 046837          325 IHVLKKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAM  402 (658)
Q Consensus       325 Is~L~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~  402 (658)
                      +..+.++.+.++|++. ||++|.  .+.+.++-.+........|.++-+ |      -++  |                 
T Consensus        10 ~~~~~~~v~i~~F~a~-wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~i-d------~~~--~-----------------   62 (107)
T d1a8la2          10 IRNIDQDVRILVFVTP-TCPYCPLAVRMAHKFAIENTKAGKGKILGDMV-E------AIE--Y-----------------   62 (107)
T ss_dssp             HTTCCSCEEEEEEECS-SCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEE-E------GGG--C-----------------
T ss_pred             HHhcCCCeEEEEEEcC-ccccchhhChhHHhhhhhhhhccCCcEEEEEe-c------ccc--c-----------------
Confidence            3456677778889999 998874  445655544433334455666665 2      111  1                 


Q ss_pred             CcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837          403 IQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       403 i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                            ..|.++|+++++|++++ ..+|+.+.
T Consensus        63 ------~~l~~~~~V~~vPTi~i-~~~G~~~~   87 (107)
T d1a8la2          63 ------PEWADQYNVMAVPKIVI-QVNGEDRV   87 (107)
T ss_dssp             ------HHHHHHTTCCSSCEEEE-EETTEEEE
T ss_pred             ------cccccccccccceEEEE-EeCCeEEE
Confidence                  12566799999999765 56887654

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.22  E-value=0.0065  Score=50.89  Aligned_cols=70  Identities=11%  Similarity=0.072  Sum_probs=49.0

Q ss_pred             ccCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837          328 LKKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP  405 (658)
Q Consensus       328 L~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~  405 (658)
                      -.||.|+++|.+. ||++|.  .+.+.+++++.+  +...++-|-++       +.                       .
T Consensus        23 ~~~k~vlv~f~a~-wC~~C~~~~p~~~~l~~~~~--~~~~~~~i~~d-------~~-----------------------~   69 (111)
T d1xwaa_          23 ASGKLVVLDFFAT-WCGPCKMISPKLVELSTQFA--DNVVVLKVDVD-------EC-----------------------E   69 (111)
T ss_dssp             HTTSEEEEEEECT-TCHHHHHHHHHHHHHHHHTT--TTEEEEEEETT-------TC-----------------------H
T ss_pred             cCCCEEEEEEECC-cccCccccchhHHHHhhhcc--cceEEEEEEee-------cC-----------------------c
Confidence            3589999999999 998764  456877777765  34444444431       11                       1


Q ss_pred             HHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          406 AVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                          .+.+.|++++.|+++++ .+|+.+..
T Consensus        70 ----~l~~~~~V~~~Pt~~~~-~~G~~v~~   94 (111)
T d1xwaa_          70 ----DIAMEYNISSMPTFVFL-KNGVKVEE   94 (111)
T ss_dssp             ----HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             ----chhhcCCCccccEEEEE-ECCEEEEE
Confidence                23456999999999999 68887653

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=96.17  E-value=0.011  Score=53.66  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=69.6

Q ss_pred             CCCcEEecccccC-cEEEEEE-ecCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh----
Q 046837          318 ETRTTVQIHVLKK-KHVLLLI-SRPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ----  389 (658)
Q Consensus       318 ~~~~kV~Is~L~g-K~VlLyf-Sa~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~----  389 (658)
                      +++.+|++++++| |.|.||| -+. |||  ..++..+.+.|++++ +.+.+||=||.++     -...+.|.+-.    
T Consensus        14 ~~~~~vsL~d~~g~k~vVl~FyP~~-~tp~Ct~e~~~f~~~~~~f~-~~g~~vigIS~D~-----~~~~~~~~~~~~~~~   86 (170)
T d2h01a1          14 NTFGEVSLSDFIGKKYVLLYFYPLD-FTFVCPSEIIALDKALDSFK-ERNVELLGCSVDS-----KFTHLAWKKTPLSQG   86 (170)
T ss_dssp             SCEEEEEGGGGTTTCEEEEEECSCS-SCSSCCHHHHHHHHTHHHHH-HTTEEEEEEESSC-----HHHHHHHHTSCGGGT
T ss_pred             CCccEEehHHHCCCCeEEEEEECCC-CCCccchhhHHHhhhhhhhh-cCCeeEecccCCc-----HHHHHhHhhhhhhhc
Confidence            4666899999998 6576666 466 885  567778999999986 4579999999732     11556665322    


Q ss_pred             --cCCCceeecCCCCCcHHHHHHHHHhhccC-----CceEEEEECCCCceec
Q 046837          390 --KRMPWYSIQDPAMIQPAVIKYVKEEWKYS-----KKAIIVSVDPQGRILN  434 (658)
Q Consensus       390 --~~MPWyAVpf~~~i~~~~~r~ike~f~~~-----~iP~LVvL~pqGkv~~  434 (658)
                        ...|+.-+.-++   ..+.    +.|++-     ..+...|+||+|++..
T Consensus        87 ~~~~~~f~llsD~~---~~~~----~~ygv~~~~~~~~R~tfiId~~G~I~~  131 (170)
T d2h01a1          87 GIGNIKHTLISDIS---KSIA----RSYDVLFNESVALRAFVLIDKQGVVQH  131 (170)
T ss_dssp             CCCSCSSEEEECTT---SHHH----HHTTCEETTTEECCEEEEECTTSBEEE
T ss_pred             cccccCCceeEcCc---cHHH----HHhCCccccccceeeeEEEcCCCeEEE
Confidence              335665555544   2333    336552     3478999999999854

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=96.10  E-value=0.0091  Score=49.44  Aligned_cols=67  Identities=15%  Similarity=0.127  Sum_probs=47.7

Q ss_pred             CcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|+++|.|. ||++|..  +.+.++-++.  ..++.++.|-++       +.                          
T Consensus        19 ~kpvlv~F~a~-wC~~C~~~~p~~~~~~~~~--~~~~~~~~vd~d-------~~--------------------------   62 (107)
T d1dbya_          19 SVPVLVDFWAP-WCGPCRIIAPVVDEIAGEY--KDKLKCVKLNTD-------ES--------------------------   62 (107)
T ss_dssp             SSCEEEEEECT-TCHHHHHHHHHHHHHHHHT--TTTCEEEEEETT-------TC--------------------------
T ss_pred             CCcEEEEEECC-CCCCccccChHHHHHHHhh--cccceEEEEecc-------cc--------------------------
Confidence            57899999999 9987653  3455554443  367788877651       11                          


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceec
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                       ..|.+.|++++.|+++++. +|+.+.
T Consensus        63 -~~l~~~~~V~~~Pt~~~~~-~G~~v~   87 (107)
T d1dbya_          63 -PNVASEYGIRSIPTIMVFK-GGKKCE   87 (107)
T ss_dssp             -HHHHHHHTCCSSCEEEEES-SSSEEE
T ss_pred             -hhHHHHhcccceEEEEEEE-CCeEEE
Confidence             1245569999999999996 788764

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.97  E-value=0.0042  Score=54.85  Aligned_cols=58  Identities=9%  Similarity=0.117  Sum_probs=45.9

Q ss_pred             hhhhhhcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhc--CCceeEEEeeccChhhHHHHhhc
Q 046837          477 TILEWMKEERFICLYGGNDE-AWIRKFRNSAKDVASKA--QINWGMAYVGKKNAKKRLEEISS  536 (658)
Q Consensus       477 ~I~~~i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~--~~~~E~v~Vgkdn~~e~v~~~~~  536 (658)
                      .++++  +||+|.|||.+.+ ..|++|.+.+.+++++.  +..||+++|+.|...+.+++...
T Consensus        22 ~ls~l--~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~   82 (144)
T d1i5ga_          22 ALPSL--AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYA   82 (144)
T ss_dssp             EGGGG--TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHT
T ss_pred             eHHHc--CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHH
Confidence            45665  8999999999942 44599999999997753  45899999999988877776543

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=95.91  E-value=0.01  Score=48.73  Aligned_cols=67  Identities=9%  Similarity=0.067  Sum_probs=46.5

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|+++|.+. ||++|.  .+.+.++.++..  +.+.++-|..+       +..                         
T Consensus        17 ~~~vlv~F~a~-wC~~C~~~~~~~~~l~~~~~--~~~~~~~v~~d-------~~~-------------------------   61 (104)
T d1fb6a_          17 EVPVMVDFWAP-WCGPCKLIAPVIDELAKEYS--GKIAVYKLNTD-------EAP-------------------------   61 (104)
T ss_dssp             SSCEEEEEECT-TCHHHHHHHHHHHHHHHHTT--TTCEEEEEETT-------TCH-------------------------
T ss_pred             CCcEEEEEEcC-ccCCccccCchhHHHHHhhc--CccceeEEecc-------cch-------------------------
Confidence            46699999999 998865  345666655543  45566666541       111                         


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceec
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        .+.+.|++++.|+++++ .+|+.+.
T Consensus        62 --~l~~~~~V~~~Pt~~~~-~~G~~v~   85 (104)
T d1fb6a_          62 --GIATQYNIRSIPTVLFF-KNGERKE   85 (104)
T ss_dssp             --HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             --hhhhhcceeeeeEEEEE-EcCeEEE
Confidence              25567999999999998 5898763

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.00081  Score=58.31  Aligned_cols=70  Identities=13%  Similarity=0.121  Sum_probs=43.2

Q ss_pred             cCcEEEEEEecCCCCChHHHH--H---HHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837          329 KKKHVLLLISRPDDISQEEIL--F---LSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI  403 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~~~--~---L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i  403 (658)
                      +||.|+++|.|. ||++|...  .   +.++++. .  .+  +|.|.+++      +.+          +-.+       
T Consensus        24 ~~Kpvlv~F~a~-wC~~C~~~~~~~~~~~~~~~~-~--~~--fv~v~vd~------~~~----------~~~~-------   74 (135)
T d1sena_          24 SGLPLMVIIHKS-WCGACKALKPKFAESTEISEL-S--HN--FVMVNLED------EEE----------PKDE-------   74 (135)
T ss_dssp             HTCCEEEEEECT-TCHHHHHHHHHHHTCHHHHHH-H--TT--SEEEEEEG------GGS----------CSCG-------
T ss_pred             cCCcEEEEEEec-CCCCceecchhhhhhHHHHHh-c--CC--cEEEeCCC------CcC----------HHHH-------
Confidence            589999999999 99876432  2   3444442 2  34  57777631      110          0000       


Q ss_pred             cHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          404 QPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       404 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                              ....+..+.|+++++||+|+++..
T Consensus        75 --------~~~~~~~~~Pt~~~~d~~G~~~~~   98 (135)
T d1sena_          75 --------DFSPDGGYIPRILFLDPSGKVHPE   98 (135)
T ss_dssp             --------GGCTTCSCSSEEEEECTTSCBCTT
T ss_pred             --------HHHhhcccceeEEEECCCCeEEEE
Confidence                    001344568999999999998853

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=95.79  E-value=0.0071  Score=50.99  Aligned_cols=68  Identities=12%  Similarity=0.333  Sum_probs=44.9

Q ss_pred             CcEEEEEEecCCCCChHHHHHHHHHHHHhcC-CCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHH
Q 046837          330 KKHVLLLISRPDDISQEEILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVI  408 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~  408 (658)
                      +|.|+++|.+. ||++|..  +...++++.. ..++.++.|-+       ++.                           
T Consensus        26 ~k~vvv~F~a~-wC~~C~~--~~p~~~~~~~~~~~~~~~~vd~-------d~~---------------------------   68 (113)
T d1ti3a_          26 QKLIVVDFTAS-WCPPCKM--IAPIFAELAKKFPNVTFLKVDV-------DEL---------------------------   68 (113)
T ss_dssp             SSEEEEEEECS-SCHHHHH--HHHHHHHHHHHCSSEEEEEEET-------TTC---------------------------
T ss_pred             CCEEEEEEEcC-ccccchh--hhhhhhhhhccCCCceEEeeee-------ecc---------------------------
Confidence            68899999999 9988752  3344444432 24555554443       111                           


Q ss_pred             HHHHHhhccCCceEEEEECCCCceecc
Q 046837          409 KYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       409 r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                      +.|.+.|++++.|+++++. +|+.+..
T Consensus        69 ~~l~~~~~I~~~Pt~~~~k-~G~~v~~   94 (113)
T d1ti3a_          69 KAVAEEWNVEAMPTFIFLK-DGKLVDK   94 (113)
T ss_dssp             HHHHHHHHCSSTTEEEEEE-TTEEEEE
T ss_pred             ccccccCeecccceEEEEE-CCEEEEE
Confidence            1244669999999999996 8987643

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.58  E-value=0.011  Score=49.81  Aligned_cols=67  Identities=18%  Similarity=0.365  Sum_probs=44.8

Q ss_pred             CcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|+++|.+. ||++|..  +.|.++.++.   ++  ++|+-+..     ++.                          
T Consensus        28 ~~~vlv~F~a~-wC~~C~~~~p~~~~l~~~~---~~--~~~~~vd~-----~~~--------------------------   70 (114)
T d1xfla_          28 KTLVVVDFTAS-WCGPCRFIAPFFADLAKKL---PN--VLFLKVDT-----DEL--------------------------   70 (114)
T ss_dssp             TCEEEEEEECT-TCHHHHHHHHHHHHHHHHC---SS--EEEEEEET-----TTS--------------------------
T ss_pred             CCeEEEEEEcC-CCCCccccccchhhhcccc---cc--cceeEEEe-----eec--------------------------
Confidence            68899999999 9988753  3455554443   33  55665521     111                          


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceecc
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                       ..+.+.|++++.|+++++ .+|+.+..
T Consensus        71 -~~l~~~~~V~~~Pt~~~~-~~G~~v~~   96 (114)
T d1xfla_          71 -KSVASDWAIQAMPTFMFL-KEGKILDK   96 (114)
T ss_dssp             -HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -eeeccccceeeeEEEEEE-ECCEEEEE
Confidence             124456999999999999 68988754

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=95.57  E-value=0.0035  Score=53.07  Aligned_cols=69  Identities=9%  Similarity=0.077  Sum_probs=47.2

Q ss_pred             cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      .+|.|.++|.+. ||++|.  .+.|.++.++.+  +++.++-|-+        |+                         
T Consensus        23 ~~k~vvv~f~a~-wC~~C~~~~p~~~~l~~~~~--~~v~~~~vd~--------d~-------------------------   66 (112)
T d1ep7a_          23 EHKPIVVDFTAT-WCGPCKMIAPLFETLSNDYA--GKVIFLKVDV--------DA-------------------------   66 (112)
T ss_dssp             HTCCEEEEEECT-TCHHHHHHHHHHHHHHHHTT--TTSEEEEEET--------TT-------------------------
T ss_pred             cCCeEEEEEEcC-CcCCCcccchhhhhhhhccc--ceEEEEEeec--------cc-------------------------
Confidence            478899999999 998764  456777777664  3444444443        11                         


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceecc
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                       .+.+.+.|++++.|+++++ .+|+.+..
T Consensus        67 -~~~l~~~~~v~~~Pt~~~~-~~G~~v~~   93 (112)
T d1ep7a_          67 -VAAVAEAAGITAMPTFHVY-KDGVKADD   93 (112)
T ss_dssp             -THHHHHHHTCCBSSEEEEE-ETTEEEEE
T ss_pred             -cccccccccccCCCEEEEE-ECCEEEEE
Confidence             1134566999999999988 48887643

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=95.43  E-value=0.026  Score=46.65  Aligned_cols=67  Identities=13%  Similarity=0.104  Sum_probs=47.5

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|+++|.+. ||++|.  .+.|.++.++.+  +.+.++-|-++       +.                          
T Consensus        20 ~~~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~d-------~~--------------------------   63 (108)
T d1thxa_          20 EQPVLVYFWAS-WCGPCQLMSPLINLAANTYS--DRLKVVKLEID-------PN--------------------------   63 (108)
T ss_dssp             SSCEEEEEECT-TCTTHHHHHHHHHHHHHHTT--TTCEEEEEEST-------TC--------------------------
T ss_pred             CCcEEEEEECC-CCCCccccchHHHHHHHhcC--Ccceeceeccc-------cc--------------------------
Confidence            46799999999 998865  445766666554  45677666541       11                          


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceec
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                       ..|.+.|++++.|+++++. +|+.+.
T Consensus        64 -~~l~~~~~I~~~Pt~~~~~-~g~~v~   88 (108)
T d1thxa_          64 -PTTVKKYKVEGVPALRLVK-GEQILD   88 (108)
T ss_dssp             -HHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             -HHHHHHhcccCCCEEEEEE-CCEEEE
Confidence             1245679999999999997 787663

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.0049  Score=51.16  Aligned_cols=67  Identities=7%  Similarity=0.053  Sum_probs=43.7

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|+++|.+. ||++|.  .+.+.++.++..  .++.++-|-+         ++                     .   
T Consensus        20 ~~~v~v~F~a~-wC~~C~~~~~~~~~~a~~~~--~~~~~~~vd~---------d~---------------------~---   63 (108)
T d2trxa_          20 DGAILVDFWAE-WCGPCKMIAPILDEIADEYQ--GKLTVAKLNI---------DQ---------------------N---   63 (108)
T ss_dssp             SSEEEEEEECT-TCHHHHHHHHHHHHHHHHTT--TTEEEEEEET---------TT---------------------C---
T ss_pred             CCcEEEEEECC-CCCCccccCcHHHHHHHHhh--cceeeeeccc---------cc---------------------h---
Confidence            57899999999 998874  334544444432  4454444432         11                     0   


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceec
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                       +.+.++|++++.|+++++ .+|+.+.
T Consensus        64 -~~l~~~~~v~~~PT~~~~-~~G~~v~   88 (108)
T d2trxa_          64 -PGTAPKYGIRGIPTLLLF-KNGEVAA   88 (108)
T ss_dssp             -TTHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -hhHHHHhCCCcEEEEEEE-ECCEEEE
Confidence             124456999999999998 5898764

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.35  E-value=0.009  Score=50.76  Aligned_cols=66  Identities=3%  Similarity=0.013  Sum_probs=44.4

Q ss_pred             CcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ++.|+++|+|. ||++|..  +.|.++.++.   .+..++.|-+        |+                          
T Consensus        26 ~~~vvv~F~a~-wC~~C~~~~p~l~~l~~~~---~~v~~~~vd~--------d~--------------------------   67 (113)
T d1r26a_          26 DILTVAWFTAV-WCGPCKTIERPMEKIAYEF---PTVKFAKVDA--------DN--------------------------   67 (113)
T ss_dssp             SSCEEEEEECT-TCHHHHHTHHHHHHHHHHC---TTSEEEEEET--------TT--------------------------
T ss_pred             CCeEEEEEECC-CCccchhhceecccccccc---cccccccccc--------cc--------------------------
Confidence            56799999999 9988753  3455555443   3444444433        11                          


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceec
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                      ...|.+.|+++++|+++++ .+|+.+.
T Consensus        68 ~~~l~~~~~V~~~Pt~~~~-~~G~~v~   93 (113)
T d1r26a_          68 NSEIVSKCRVLQLPTFIIA-RSGKMLG   93 (113)
T ss_dssp             CHHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             chhhHHHccccCCCEEEEE-ECCEEEE
Confidence            1235667999999999988 5788764

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.21  E-value=0.017  Score=47.54  Aligned_cols=66  Identities=9%  Similarity=0.030  Sum_probs=45.3

Q ss_pred             CcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|.++|.+. ||++|..  +.|.++-++.   .+..++.|-++       +..                         
T Consensus        18 ~~~vvv~F~a~-wC~~C~~~~~~~~~l~~~~---~~~~~~~vd~d-------~~~-------------------------   61 (103)
T d1syra_          18 NELVIVDFFAE-WCGPCKRIAPFYEECSKTY---TKMVFIKVDVD-------EVS-------------------------   61 (103)
T ss_dssp             CSEEEEEEECT-TCHHHHHHHHHHHHHHHHC---TTSEEEEEETT-------TTH-------------------------
T ss_pred             CCcEEEEEeCC-cccCcccccccchhhhhcc---cceEEEeeccc-------cCc-------------------------
Confidence            67899999999 9988754  4566655554   34455555541       111                         


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceec
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        .+.+.|++++.|+++++. +|+.+.
T Consensus        62 --~~~~~~~V~~~Pt~i~~k-~G~~v~   85 (103)
T d1syra_          62 --EVTEKENITSMPTFKVYK-NGSSVD   85 (103)
T ss_dssp             --HHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             --ceeeeeeeecceEEEEEE-CCEEEE
Confidence              244679999999999995 898764

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=95.06  E-value=0.019  Score=47.23  Aligned_cols=66  Identities=9%  Similarity=0.045  Sum_probs=45.2

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|+++|.+. ||++|.  .+.+.++.++.+  +++.++=|-+        |                    .      
T Consensus        17 ~k~vvv~F~a~-wC~~C~~~~~~~~~l~~~~~--~~~~~~~vd~--------~--------------------~------   59 (105)
T d1nw2a_          17 DKPVLVDFWAA-WCGPCRMMAPVLEEFAEAHA--DKVTVAKLNV--------D--------------------E------   59 (105)
T ss_dssp             SSCEEEEEECT-TCHHHHHHHHHHHHHHHHHT--TTCEEEEEET--------T--------------------T------
T ss_pred             CCcEEEEEECC-CCCCcccccchhhhhhhhcC--CceEEEEEEC--------C--------------------C------
Confidence            57899999999 998765  456777766654  3444444332        1                    1      


Q ss_pred             HHHHHHhhccCCceEEEEECCCCcee
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                      -+.+.+.|++++.|+++++. +|+.+
T Consensus        60 ~~~~~~~~~V~~~Pt~~~~~-~G~~~   84 (105)
T d1nw2a_          60 NPETTSQFGIMSIPTLILFK-GGEPV   84 (105)
T ss_dssp             CHHHHHHTTCCBSSEEEEEE-TTEEE
T ss_pred             CcccHHHCCcceeeEEEEEE-CCEEE
Confidence            11234569999999999995 78765

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.058  Score=51.29  Aligned_cols=102  Identities=10%  Similarity=0.167  Sum_probs=65.5

Q ss_pred             CCCcEEecccccC-cEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHH----hhc
Q 046837          318 ETRTTVQIHVLKK-KHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKN----LQK  390 (658)
Q Consensus       318 ~~~~kV~Is~L~g-K~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~----~~~  390 (658)
                      ..| +|.+++++| |.|.|||=-.+|||.  .|+..|.+.|++.+ +.+.+|+-||.+.     .+....|.+    +..
T Consensus        15 ~~G-~v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~-~~g~~v~giS~Ds-----~~sh~~~~~~~~~~~~   87 (220)
T d1prxa_          15 TVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFA-KRNVKLIALSIDS-----VEDHLAWSKDINAYNS   87 (220)
T ss_dssp             TTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHH-TTTEEEEEEESSC-----HHHHHHHHHHHHHHTT
T ss_pred             CCC-CEEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhh-cccceeecccccc-----ccchhhhhhhhhhccc
Confidence            345 599999998 667776654327754  46667999999986 4569999999832     124444432    222


Q ss_pred             -----CCCceeecCCCCCcHHHHHHHHHhhccC------------CceEEEEECCCCcee
Q 046837          391 -----RMPWYSIQDPAMIQPAVIKYVKEEWKYS------------KKAIIVSVDPQGRIL  433 (658)
Q Consensus       391 -----~MPWyAVpf~~~i~~~~~r~ike~f~~~------------~iP~LVvL~pqGkv~  433 (658)
                           .+|..-+.-++       +.+.+.|++-            -.+...|+||+|++.
T Consensus        88 ~~~~~~l~fpllsD~~-------~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir  140 (220)
T d1prxa_          88 EEPTEKLPFPIIDDRN-------RELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLK  140 (220)
T ss_dssp             SCCCSCCSSCEEECTT-------CHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEE
T ss_pred             cccccCcccccccCcc-------cHHHHHhCCccccccccccceeeeEEEEEEcCcccee
Confidence                 34433333332       3444456653            358899999999984

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.90  E-value=0.024  Score=46.64  Aligned_cols=68  Identities=3%  Similarity=-0.128  Sum_probs=43.5

Q ss_pred             ccccCcEEEEEEecCCCCChHHHHHHHHHHHHhc-CCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCc
Q 046837          326 HVLKKKHVLLLISRPDDISQEEILFLSNMYKDLK-ESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQ  404 (658)
Q Consensus       326 s~L~gK~VlLyfSa~~~~~~~~~~~L~~iY~~lk-~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~  404 (658)
                      ..|+|....+.|++. |||+|.  .+..+++++. ...+.+++-|-..       +.                       
T Consensus        11 k~l~~~~~i~~F~s~-~C~~C~--~~~p~~~~~a~~~~~i~~~~vd~~-------~~-----------------------   57 (96)
T d1hyua4          11 RDIDGDFEFETYYSL-SCHNCP--DVVQALNLMAVLNPRIKHTAIDGG-------TF-----------------------   57 (96)
T ss_dssp             HHCCSCEEEEEEECT-TCSSHH--HHHHHHHHHHHHCTTEEEEEEETT-------TC-----------------------
T ss_pred             HhcCCCeEEEEEECC-CCcchH--HHHHHHHHHHHhCCceEEEEEecc-------cc-----------------------
Confidence            356788888899999 999874  2344444543 2456666655441       11                       


Q ss_pred             HHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837          405 PAVIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       405 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                          +.+.+.|+++++|++++   +|+.+
T Consensus        58 ----~~l~~~~~I~~vPt~~~---ng~~~   79 (96)
T d1hyua4          58 ----QNEITERNVMGVPAVFV---NGKEF   79 (96)
T ss_dssp             ----HHHHHHTTCCSSSEEEE---TTEEE
T ss_pred             ----hHHHhhcccccccEEEE---CCEEE
Confidence                12345689999999865   77765

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=94.38  E-value=0.037  Score=46.63  Aligned_cols=67  Identities=10%  Similarity=0.069  Sum_probs=44.7

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|.++|.+. ||++|.  .+.|.++-++.   .+.  +|+.++-     +++                          
T Consensus        25 ~k~vvv~f~a~-wC~~C~~~~p~~~~l~~~~---~~v--~~~~vd~-----~~~--------------------------   67 (112)
T d1f9ma_          25 DKPVVLDMFTQ-WCGPCKAMAPKYEKLAEEY---LDV--IFLKLDC-----NQE--------------------------   67 (112)
T ss_dssp             TSCEEEEEECT-TCHHHHHHHHHHHHHHHHC---TTS--EEEEEEC-----SST--------------------------
T ss_pred             CCEEEEEEEcC-CCcchHHHHHHHhhhcccc---ccc--eeecccc-----ccc--------------------------
Confidence            46799999999 998874  34566555554   343  4555411     010                          


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceec
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                      -+.|.+.|++++.|+++++ .+|+.+.
T Consensus        68 ~~~l~~~~~V~~~Pt~~~~-k~G~~v~   93 (112)
T d1f9ma_          68 NKTLAKELGIRVVPTFKIL-KENSVVG   93 (112)
T ss_dssp             THHHHHHHCCSSSSEEEEE-ETTEEEE
T ss_pred             chhhHhheeeccCCEEEEE-ECCEEEE
Confidence            1234566999999999999 5898874

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.30  E-value=0.0085  Score=47.58  Aligned_cols=66  Identities=12%  Similarity=0.117  Sum_probs=40.6

Q ss_pred             CcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|...++|+|. ||++|  ..+.+.++.++..  .  .+.++.++.      |+                 +++      
T Consensus         2 ~kv~v~~F~a~-wC~~C~~~~p~~~~~~~~~~--~--~~~~~~~~~------d~-----------------~~~------   47 (85)
T d1fo5a_           2 SKVKIELFTSP-MCPHCPAAKRVVEEVANEMP--D--AVEVEYINV------ME-----------------NPQ------   47 (85)
T ss_dssp             CCEEEEEEECC-CSSCCCTHHHHHHHHHHHCS--S--SEEEEEEES------SS-----------------SCC------
T ss_pred             CceEEEEEECC-CCcChHhhhhhccccccccc--c--ccccccccc------cc-----------------ccc------
Confidence            47778899999 99765  4556666665543  2  344444411      11                 222      


Q ss_pred             HHHHHHhhccCCceEEEEECCCCcee
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                         +.++|++++.|+++ ++.+|+.+
T Consensus        48 ---la~~~~V~~~Pt~~-i~~~g~~~   69 (85)
T d1fo5a_          48 ---KAMEYGIMAVPTIV-INGDVEFI   69 (85)
T ss_dssp             ---TTTSTTTCCSSEEE-ETTEEECC
T ss_pred             ---ccccCCceEeeEEE-EECCcEEE
Confidence               12468999999975 56677643

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.07  Score=43.91  Aligned_cols=67  Identities=13%  Similarity=0.168  Sum_probs=44.7

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|.+.|.|. ||++|.  .+.|.++.++.   ++.  +|+-+ |.    ++.                          
T Consensus        20 ~k~vvv~F~a~-wC~~C~~~~p~~~~l~~~~---~~~--~~~~v-d~----d~~--------------------------   62 (105)
T d2ifqa1          20 DKLVVVDFSAT-WCGPCKMIKPFFHSLSEKY---SNV--IFLEV-DV----DDC--------------------------   62 (105)
T ss_dssp             TSCEEEEEECT-TCHHHHHHHHHHHHHHHHC---TTS--EEEEE-ET----TTC--------------------------
T ss_pred             CCEEEEEEEcC-Cccchhhhhhhhhhhcccc---ccc--eeeec-cc----ccC--------------------------
Confidence            57899999999 998875  34566665544   333  45544 10    011                          


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceecc
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                       ..+.+.|++++.|+++++ .+|+.+..
T Consensus        63 -~~~~~~~~V~~~Pt~~~~-~~G~~v~~   88 (105)
T d2ifqa1          63 -QDVASECEVKCMPTFQFF-KKGQKVGE   88 (105)
T ss_dssp             -HHHHHHTTCCBSSEEEEE-ETTEEEEE
T ss_pred             -HhHHHHcCceEEEEEEEE-ECCEEEEE
Confidence             123456999999999999 68988753

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=93.72  E-value=0.036  Score=48.16  Aligned_cols=59  Identities=10%  Similarity=0.110  Sum_probs=46.2

Q ss_pred             hhhhhhcCCcEEEEEccCC-chHHHHHHHHHHHHHhhc--CCceeEEEeeccChhhHHHHhhcc
Q 046837          477 TILEWMKEERFICLYGGND-EAWIRKFRNSAKDVASKA--QINWGMAYVGKKNAKKRLEEISSS  537 (658)
Q Consensus       477 ~I~~~i~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~--~~~~E~v~Vgkdn~~e~v~~~~~~  537 (658)
                      .+++.  .||+|.|||.+. -..|+++.+.+.+++++.  +..|+++.|+.|+..+..++....
T Consensus        22 ~l~~~--~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~   83 (144)
T d1o73a_          22 SLGSL--VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGK   83 (144)
T ss_dssp             CSGGG--TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTT
T ss_pred             eHHHh--CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHh
Confidence            34554  899999999984 244599999999997753  568999999999888877776543

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.079  Score=44.21  Aligned_cols=66  Identities=9%  Similarity=0.017  Sum_probs=44.9

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|.++|++. ||++|.  .+.|.++.++..   +  +.|+-++-     ++.                          
T Consensus        21 ~klvvv~F~a~-wC~~Ck~~~p~~~~la~~~~---~--~~f~~vd~-----d~~--------------------------   63 (107)
T d1gh2a_          21 SRLAVVKFTMR-GCGPCLRIAPAFSSMSNKYP---Q--AVFLEVDV-----HQC--------------------------   63 (107)
T ss_dssp             TSCEEEEEECS-SCHHHHHHHHHHHHHHHHCT---T--SEEEEEET-----TTS--------------------------
T ss_pred             CCEEEEEEECC-CCCCccccchhhhccccccc---c--cccccccc-----ccc--------------------------
Confidence            67899999999 998865  456777766542   3  44554410     111                          


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceec
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                       ..|.+.|++++.|+++++ .+|+.+.
T Consensus        64 -~~l~~~~~v~~~Pt~~~~-~~G~~v~   88 (107)
T d1gh2a_          64 -QGTAATNNISATPTFQFF-RNKVRID   88 (107)
T ss_dssp             -HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -hhhhhhcCceeceEEEEE-ECCEEEE
Confidence             124467999999999999 5788764

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.62  E-value=0.072  Score=47.42  Aligned_cols=44  Identities=7%  Similarity=0.052  Sum_probs=35.7

Q ss_pred             ecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEec
Q 046837          324 QIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPI  371 (658)
Q Consensus       324 ~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpi  371 (658)
                      .+..|+||.+.|-|.+. |||+  .+.|.|.++|++-   .+.+++.|..
T Consensus        48 ~l~~~~~~~~~l~~~~t-WC~~C~~~~P~l~~l~~~~---~~~~~~~i~~   93 (166)
T d1z6na1          48 RLQRIERRYRLLVAGEM-WCPDCQINLAALDFAQRLQ---PNIELAIISK   93 (166)
T ss_dssp             HHHTCCSCEEEEEECCT-TCHHHHHHHHHHHHHHHHC---TTEEEEEECH
T ss_pred             HHHHhcCCeEEEEEEeC-cCccHHHHHHHHHHHHHHC---CCCcEEEEEC
Confidence            45578899999999999 9976  5788899998874   4678888775

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.47  E-value=0.063  Score=45.98  Aligned_cols=69  Identities=4%  Similarity=0.172  Sum_probs=40.3

Q ss_pred             cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      ..+.|+|.|.+. |||+|  ..+.|.++-++.. +.++.++-|-.        | +                        
T Consensus        29 ~~~~vll~f~a~-wCp~C~~~~pvl~eL~~~~~-~~~~~~~~Vd~--------d-~------------------------   73 (119)
T d2es7a1          29 GDGVILLSSDPR-RTPEVSDNPVMIAELLREFP-QFDWQVAVADL--------E-Q------------------------   73 (119)
T ss_dssp             CSEEEEECCCSC-C----CCHHHHHHHHHHTCT-TSCCEEEEECH--------H-H------------------------
T ss_pred             CCcEEEEeecCC-CCccHHHHHHHHHHHHHhcC-CCceEEEEEEC--------C-C------------------------
Confidence            356788889999 99875  4566777666542 22344444322        2 1                        


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCceec
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                       -+.|.+.|+++++|+++++ .+|+.+.
T Consensus        74 -~~~l~~~~~V~~~Pt~~~~-~~G~~v~   99 (119)
T d2es7a1          74 -SEAIGDRFNVRRFPATLVF-TDGKLRG   99 (119)
T ss_dssp             -HHHHHHTTTCCSSSEEEEE-SCC----
T ss_pred             -CHHHHHhcCcCcceEEEEE-EcCeEEE
Confidence             1346677999999999999 5787664

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.078  Score=47.03  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=18.8

Q ss_pred             HHHhhccCCceEEEEECCC-Ccee
Q 046837          411 VKEEWKYSKKAIIVSVDPQ-GRIL  433 (658)
Q Consensus       411 ike~f~~~~iP~LVvL~pq-Gkv~  433 (658)
                      +.+.|++.+.|+++++||. |+.+
T Consensus        93 ~~~~y~v~~~Pti~~idp~~ge~v  116 (147)
T d2dlxa1          93 YIQFYKLGDFPYVSILDPRTGQKL  116 (147)
T ss_dssp             HHHHHTCCSSSEEEEECTTTCCCC
T ss_pred             hhhheecCceeEEEEEeCCCCeEe
Confidence            3566899999999999995 7664

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.97  E-value=0.084  Score=46.48  Aligned_cols=67  Identities=9%  Similarity=0.062  Sum_probs=47.7

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|.+.|++. ||++|.  .+.|.++-++++  +.+.++-|-+.       +.                  |       
T Consensus        22 ~k~vvv~F~a~-wC~~C~~~~p~l~~la~~~~--~~v~~~~VDvd-------~~------------------~-------   66 (137)
T d1qgva_          22 DRVVVIRFGHD-WDPTCMKMDEVLYSIAEKVK--NFAVIYLVDIT-------EV------------------P-------   66 (137)
T ss_dssp             SSEEEEEEECT-TSHHHHHHHHHHHHHHHHHT--TTEEEEEEETT-------TC------------------C-------
T ss_pred             CCEEEEEEECC-CCccchhcChHHHHHHHHhh--ccceEEEeecc-------cc------------------c-------
Confidence            68999999999 998765  456777777764  44555555541       11                  1       


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceec
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                        -|.+.|+++++|+++++ .+|+.+.
T Consensus        67 --~la~~~~I~~~PT~~~f-~~g~~i~   90 (137)
T d1qgva_          67 --DFNKMYELYDPCTVMFF-FRNKHIM   90 (137)
T ss_dssp             --TTTTSSCSCSSCEEEEE-ETTEEEE
T ss_pred             --hhhhhcCeeeEEEEEEE-eCCcEEE
Confidence              13356999999999999 6787664

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.03  Score=46.86  Aligned_cols=68  Identities=13%  Similarity=0.094  Sum_probs=44.6

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      +|.|+++|-+. ||++|.  .+.+.++.++++. .+..|+++-+ |      -++                ++       
T Consensus        24 ~k~vlV~Fya~-wC~~C~~~~p~~~~~~~~~~~-~~~~v~~~~v-d------~~~----------------~~-------   71 (120)
T d1meka_          24 HKYLLVEFYAP-WCGHCKALAPEYAKAAGKLKA-EGSEIRLAKV-D------ATE----------------ES-------   71 (120)
T ss_dssp             CSEEEEEEECS-SCSTTSTTHHHHHHHHHTTTT-TCCCCBCEEE-E------TTT----------------CC-------
T ss_pred             CCcEEEEEECC-CcCCccccchhhhhhcccccc-cccceeeecc-c------ccc----------------ch-------
Confidence            68999999999 997764  4567777777653 2334555555 1      111                11       


Q ss_pred             HHHHHHhhccCCceEEEEECCCCce
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRI  432 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv  432 (658)
                        .|.++|++++.|+++++ ++|+.
T Consensus        72 --~l~~~~~i~~~Pt~~~~-~~G~~   93 (120)
T d1meka_          72 --DLAQQYGVRGYPTIKFF-RNGDT   93 (120)
T ss_dssp             --SSHHHHTCCSSSEEEEE-ESSCS
T ss_pred             --hHHHHhCCccCCeEEEE-ECCeE
Confidence              23456999999999988 34543

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=91.23  E-value=0.47  Score=44.87  Aligned_cols=99  Identities=13%  Similarity=0.202  Sum_probs=65.4

Q ss_pred             EEeccc-ccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh------cCC
Q 046837          322 TVQIHV-LKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ------KRM  392 (658)
Q Consensus       322 kV~Is~-L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~------~~M  392 (658)
                      ++.+++ ++||.|.|||=-.+++|.  .|+..+.+.|++.+ +.+.+|+=||.+.     -+....|.+-.      ..+
T Consensus        21 ~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~-~~~~~vigiS~Ds-----~~sh~~w~~~~~~~~~~~~l   94 (219)
T d1xcca_          21 DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFL-KLNCKLIGFSCNS-----KESHDKWIEDIKYYGKLNKW   94 (219)
T ss_dssp             CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHH-TTTEEEEEEESSC-----HHHHHHHHHHHHHHHTCSCC
T ss_pred             cEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhc-ccceEEEeecCcc-----HhHHhHHhhhhHhhcccCCC
Confidence            588888 589988888865526754  45566999999986 4579999999732     11555554332      255


Q ss_pred             CceeecCCCCCcHHHHHHHHHhhccC--------C----ceEEEEECCCCcee
Q 046837          393 PWYSIQDPAMIQPAVIKYVKEEWKYS--------K----KAIIVSVDPQGRIL  433 (658)
Q Consensus       393 PWyAVpf~~~i~~~~~r~ike~f~~~--------~----iP~LVvL~pqGkv~  433 (658)
                      |+.-+--++   .+    +.+.|++-        +    .....|+||+|++.
T Consensus        95 ~fpllsD~~---~~----va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir  140 (219)
T d1xcca_          95 EIPIVCDES---RE----LANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIK  140 (219)
T ss_dssp             CCCEEECTT---SH----HHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEE
T ss_pred             Ccccccccc---cH----HHHHhCCcccccccCcccceeeeeeEEEcCcceEE
Confidence            655555443   23    34446662        1    24888999999985

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.20  E-value=0.42  Score=42.14  Aligned_cols=58  Identities=17%  Similarity=0.123  Sum_probs=41.8

Q ss_pred             cccCCCCcEEecccc-cCcEEEEEEecCCCCChH---HHHHHHHHHHHhcCCCCeeEEEEec
Q 046837          314 LVDGETRTTVQIHVL-KKKHVLLLISRPDDISQE---EILFLSNMYKDLKESKECRIVWLPI  371 (658)
Q Consensus       314 l~~g~~~~kV~Is~L-~gK~VlLyfSa~~~~~~~---~~~~L~~iY~~lk~~~~fEIVwIpi  371 (658)
                      |++..+|++|.++++ +||.|.|||=-..++|.|   .+....+-|+++++.+.-+|+-+|.
T Consensus        14 l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~   75 (161)
T d1hd2a_          14 VFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSV   75 (161)
T ss_dssp             EECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEES
T ss_pred             EEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEec
Confidence            666777889999985 899988888755355544   4556777788887665556666776

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=90.92  E-value=0.12  Score=45.01  Aligned_cols=68  Identities=6%  Similarity=0.113  Sum_probs=44.4

Q ss_pred             CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837          330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV  407 (658)
Q Consensus       330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~  407 (658)
                      ++.|+|.|.+. |||+|.  .+.|.++-++.. +..|.+.-|-.        | +                         
T Consensus        36 ~~vVll~f~a~-wCp~C~~~~pvl~ela~~~~-~~~~~~a~Vd~--------d-~-------------------------   79 (132)
T d2hfda1          36 DGVVLLSSDPK-RTPEVSDNPVMIGELLREFP-DYTWQVAIADL--------E-Q-------------------------   79 (132)
T ss_dssp             EEEEEECSCCS-CCSSSSCCTHHHHHHHTTCT-TSCEEEEEECH--------H-H-------------------------
T ss_pred             CcEEEEEeeCC-CChhHHHHHHHHHHHHHHcc-CCcceeEEEEe--------c-C-------------------------
Confidence            45688889999 998754  556666544432 12344443322        2 1                         


Q ss_pred             HHHHHHhhccCCceEEEEECCCCceec
Q 046837          408 IKYVKEEWKYSKKAIIVSVDPQGRILN  434 (658)
Q Consensus       408 ~r~ike~f~~~~iP~LVvL~pqGkv~~  434 (658)
                      -+.|.+.|+++++|+++++ .+|+.+.
T Consensus        80 ~~~la~~~~V~~~PT~~~~-~~G~~v~  105 (132)
T d2hfda1          80 SEAIGDRFGVFRFPATLVF-TGGNYRG  105 (132)
T ss_dssp             HHHHHHHHTCCSCCEEEEE-ETTEEEE
T ss_pred             CHHHHHhhccCcceeEEEE-EcCcEee
Confidence            1456677999999999999 6887763

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.82  E-value=0.3  Score=40.25  Aligned_cols=49  Identities=8%  Similarity=0.074  Sum_probs=28.6

Q ss_pred             CCCcEEeccccc-CcEEEEEEecCCCCChHHHHHHHHHHHHhcCCCCeeEEEEec
Q 046837          318 ETRTTVQIHVLK-KKHVLLLISRPDDISQEEILFLSNMYKDLKESKECRIVWLPI  371 (658)
Q Consensus       318 ~~~~kV~Is~L~-gK~VlLyfSa~~~~~~~~~~~L~~iY~~lk~~~~fEIVwIpi  371 (658)
                      +.|..-+++.-. ...++.+|++. ||++|...  .++.+++  ..+|+..+|-+
T Consensus         2 ~~~~~~~~~~~~~~~p~i~lft~~-~C~~C~~a--~~~L~~~--~~~~~~~~v~v   51 (100)
T d1wjka_           2 SSGSSGNLSASNRALPVLTLFTKA-PCPLCDEA--KEVLQPY--KDRFILQEVDI   51 (100)
T ss_dssp             CCCCCCCCCCSCCCCCEEEEEECS-SCHHHHHH--HHHTSTT--SSSSEEEEEET
T ss_pred             CCCCCCCchhcCCCCCEEEEEECC-CCCChHHH--HHHHHHh--hhhcceEEEec
Confidence            334334444433 33478889999 99988632  2333333  36677777765

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.72  E-value=0.15  Score=43.37  Aligned_cols=53  Identities=9%  Similarity=0.114  Sum_probs=41.7

Q ss_pred             CCcEEEEEccCCc-hHHHHHHHHHHHHHhhc--CCceeEEEeeccChhhHHHHhhc
Q 046837          484 EERFICLYGGNDE-AWIRKFRNSAKDVASKA--QINWGMAYVGKKNAKKRLEEISS  536 (658)
Q Consensus       484 egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~--~~~~E~v~Vgkdn~~e~v~~~~~  536 (658)
                      .||.|.|||.+.+ ..|+.+.+.+.+++++.  ...+++++|+.|+..+.++....
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~   80 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFA   80 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHT
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHh
Confidence            8999999999832 44489999998887753  45799999999987777766553

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.13  E-value=0.32  Score=40.58  Aligned_cols=68  Identities=10%  Similarity=-0.044  Sum_probs=44.8

Q ss_pred             cCcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837          329 KKKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA  406 (658)
Q Consensus       329 ~gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~  406 (658)
                      .+|.|+++|.+. ||++|..  +.+.++-++++. ++..|+-|-+        +                    +     
T Consensus        26 ~~~~~lV~fya~-wC~~C~~~~~~~~~la~~~~~-~~v~~~~vd~--------~--------------------~-----   70 (119)
T d2b5ea4          26 SHDLVLAEFFAP-WCGHCKNMAPEYVKAAETLVE-KNITLAQIDC--------T--------------------E-----   70 (119)
T ss_dssp             TCSEEEEEEECT-TCHHHHHHHHHHHHHHHHTTT-TTCEEEEEET--------T--------------------T-----
T ss_pred             cCCeEEEEEECC-ccCcccccchhhhhhhhhhcc-cceeeeeeec--------c--------------------c-----
Confidence            357899999999 9988654  456666666542 3344444332        1                    0     


Q ss_pred             HHHHHHHhhccCCceEEEEECCCCcee
Q 046837          407 VIKYVKEEWKYSKKAIIVSVDPQGRIL  433 (658)
Q Consensus       407 ~~r~ike~f~~~~iP~LVvL~pqGkv~  433 (658)
                       -+.|.++|++++.|+++++ ++|+..
T Consensus        71 -~~~l~~~~~v~~~Pti~~f-~~g~~~   95 (119)
T d2b5ea4          71 -NQDLCMEHNIPGFPSLKIF-KNSDVN   95 (119)
T ss_dssp             -CHHHHHHTTCCSSSEEEEE-ETTCTT
T ss_pred             -hHHHHHHhccccCCeEEEE-ECCEEe
Confidence             1235666899999999999 666554

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.55  E-value=3.9  Score=35.83  Aligned_cols=118  Identities=9%  Similarity=0.050  Sum_probs=66.5

Q ss_pred             HHHHHHhccCccccCCCCcEEecccccCcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcc--
Q 046837          303 KVLRALIYAEDLVDGETRTTVQIHVLKKKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDR--  378 (658)
Q Consensus       303 ~vlk~Li~~kdl~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W--  378 (658)
                      ++.+.|-.+..+..|+.+         .+++...|++. .||.|..  ..|.+..    ...+..|+|+|+- --.++  
T Consensus        18 ~~~~~l~~~~~i~~G~~~---------a~~tv~vF~D~-~CP~C~~~~~~l~~l~----~~~~v~v~~~~~~-~~~~~s~   82 (169)
T d1v58a1          18 EMWQRMEQSHWLLDGKKD---------APVIVYVFADP-FCPYCKQFWQQARPWV----DSGKVQLRTLLVG-VIKPESP   82 (169)
T ss_dssp             HHHHHHHTSCCEEESCTT---------CSEEEEEEECT-TCHHHHHHHHHHHHHH----HTTSEEEEEEECC-CSSTTHH
T ss_pred             HHHHhcccCCCceeCCCC---------CCEEEEEEECC-CCcchHHHHHHHHHHH----hccceeEEEEecc-cCCcchH
Confidence            555555555556667765         56778889999 9987643  3343332    3457899999972 11111  


Q ss_pred             -------hh-hHHHHHH-hhcCCCceeecCCCCCcHHHHHHH------HHhhccCCceEEEEECCCCceecc
Q 046837          379 -------QQ-ALDKFKN-LQKRMPWYSIQDPAMIQPAVIKYV------KEEWKYSKKAIIVSVDPQGRILNQ  435 (658)
Q Consensus       379 -------~d-de~~F~~-~~~~MPWyAVpf~~~i~~~~~r~i------ke~f~~~~iP~LVvL~pqGkv~~~  435 (658)
                             -. ++.+|.. +....-.-....+...+....+.|      -+.++++|.|++|+-|++|++..-
T Consensus        83 ~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~  154 (169)
T d1v58a1          83 ATAAAILASKDPAKTWQQYEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQA  154 (169)
T ss_dssp             HHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEE
T ss_pred             HHHHHHHhhhCHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEe
Confidence                   11 2233322 221111111111222334444444      357899999999999999987543

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.11  E-value=0.45  Score=37.45  Aligned_cols=59  Identities=12%  Similarity=0.068  Sum_probs=38.3

Q ss_pred             EEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHHHHHH
Q 046837          335 LLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKYVK  412 (658)
Q Consensus       335 LyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~r~ik  412 (658)
                      ..|++. ||++|  ..+.|.++-++..  ++++++-|-..       +++                           .+.
T Consensus         6 ~~F~a~-wC~~C~~~~p~~~~l~~~~~--~~v~~~~vd~d-------~~~---------------------------~l~   48 (85)
T d1nhoa_           6 EVFTSP-TCPYCPMAIEVVDEAKKEFG--DKIDVEKIDIM-------VDR---------------------------EKA   48 (85)
T ss_dssp             EEESCS-SSCCSTTHHHHHHHHHHHHC--SSCCEEEECTT-------TCG---------------------------GGG
T ss_pred             EEEECC-CCcchHHHHHHHhhhccccc--ccccccccccc-------cch---------------------------hhH
Confidence            459999 99765  4566777766654  45777666541       111                           134


Q ss_pred             HhhccCCceEEEEECCCCc
Q 046837          413 EEWKYSKKAIIVSVDPQGR  431 (658)
Q Consensus       413 e~f~~~~iP~LVvL~pqGk  431 (658)
                      +.|+++++|++++ +.+|+
T Consensus        49 ~~~~V~~~Pt~~~-~~~~~   66 (85)
T d1nhoa_          49 IEYGLMAVPAIAI-NGVVR   66 (85)
T ss_dssp             GGTCSSCSSEEEE-TTTEE
T ss_pred             HhcCceEeCEEEE-CCcEE
Confidence            5699999999865 55554

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.00  E-value=0.44  Score=40.28  Aligned_cols=69  Identities=10%  Similarity=0.001  Sum_probs=48.6

Q ss_pred             CchhhcccCCChhhhhhhcCCcEEEEEccCC-chHHHHHHHHHHHHHhhcCCceeEEEeeccChhhHHHHhhcc
Q 046837          465 WTLELLVGDIDATILEWMKEERFICLYGGND-EAWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKRLEEISSS  537 (658)
Q Consensus       465 w~le~Lv~~id~~I~~~i~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn~~e~v~~~~~~  537 (658)
                      +++..+ +|....+++.  .||.+.|||.+. -.+|+...+.+.+++++ ...+.++.|+-+...+.+++-.+.
T Consensus         7 f~~~~~-~G~~~~l~~~--~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~-~~~v~~v~v~~~~~~~~~~~~~~~   76 (134)
T d1lu4a_           7 FTATTL-SGAPFDGASL--QGKPAVLWFWTPWCPFCNAEAPSLSQVAAA-NPAVTFVGIATRADVGAMQSFVSK   76 (134)
T ss_dssp             CEEEBT-TSCEEEGGGG--TTSCEEEEEECTTCHHHHHHHHHHHHHHHH-CTTSEEEEEECSSCHHHHHHHHHH
T ss_pred             ceeECC-CCCEEcHHHh--CCCEEEEEEeecccCCceecchhHHHHhhh-hccccccccccccchhhhhhhhhh
Confidence            344444 5665566665  799999999773 25558888999998776 567888888887666666665543

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=83.71  E-value=0.79  Score=37.82  Aligned_cols=45  Identities=13%  Similarity=0.356  Sum_probs=33.9

Q ss_pred             hhhhcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeecc
Q 046837          479 LEWMKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKK  525 (658)
Q Consensus       479 ~~~i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkd  525 (658)
                      .+.+..|+++.+|||+++ ..|+.|.+.+.++++..+..  +++|..+
T Consensus        20 ~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~--v~~v~~~   65 (115)
T d1zmaa1          20 QEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH--IYFINSE   65 (115)
T ss_dssp             HHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC--CEEEETT
T ss_pred             HHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhh--hhhheee
Confidence            345679999999999953 56699999999998775555  4555544

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=81.71  E-value=0.98  Score=37.27  Aligned_cols=50  Identities=6%  Similarity=-0.150  Sum_probs=38.5

Q ss_pred             hhhhhhcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837          477 TILEWMKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKKN  526 (658)
Q Consensus       477 ~I~~~i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn  526 (658)
                      .+..-...+|.|.++|++++ .+|+.+.+.+.++++..+..+.++.|.-+.
T Consensus        16 ~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~   66 (112)
T d1ep7a_          16 QLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA   66 (112)
T ss_dssp             HHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT
T ss_pred             HHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccc
Confidence            34333457899999999953 666999999999988766678888887764

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=81.33  E-value=1.5  Score=38.39  Aligned_cols=79  Identities=13%  Similarity=0.127  Sum_probs=50.2

Q ss_pred             CCCCcEEeccc-ccCcEEEEEEecCCCCChH---HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchh-hHHHHH-Hhhc
Q 046837          317 GETRTTVQIHV-LKKKHVLLLISRPDDISQE---EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQ-ALDKFK-NLQK  390 (658)
Q Consensus       317 g~~~~kV~Is~-L~gK~VlLyfSa~~~~~~~---~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~d-de~~F~-~~~~  390 (658)
                      +..+.++++++ ++||.|.|||=-..+.|.|   ..+.....++++++.+..+|+-||+.+      . ....|. ....
T Consensus        21 ~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd~------~~~~~~~~~~~~~   94 (162)
T d1tp9a1          21 QDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVND------PFVMKAWAKSYPE   94 (162)
T ss_dssp             TSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSC------HHHHHHHHHTCTT
T ss_pred             CCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeeccc------hhhhhhhhhhccc
Confidence            44567899987 5999988887655244333   344567777778777888999999843      3 344443 3333


Q ss_pred             CCCceeecCCC
Q 046837          391 RMPWYSIQDPA  401 (658)
Q Consensus       391 ~MPWyAVpf~~  401 (658)
                      .-|-..+..+.
T Consensus        95 ~~~~~~lsD~~  105 (162)
T d1tp9a1          95 NKHVKFLADGS  105 (162)
T ss_dssp             CSSEEEEECTT
T ss_pred             ccccccccchh
Confidence            44555555543