Citrus Sinensis ID: 046844

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------
Protein Sequence
MKNSLILSNDSGFPSTKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQARPPELPPSPPPASSGEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFRV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccEEEcccccEEEEEcccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccHHHHHcccccccEEEccccccccccccccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEccccccEEEcccccccccccccEEEccccEEEEEcccccccccccccEEEcccccccccccccccccccccccccccccEEEcccccccccccHHHHHHccccccEEEcccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccccccccccccccEEEEcccccEEcccccccccccccEEEccccccccccccHHcccccccccEEEccccccEEEcccccccccccccEEEccccccEEcccHHHHHcccccEEEcccccccccccHHHHccccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHHHHHHHHccccccccccEEEcccccEEEEEEEEEEcccEEEEcccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHHccccHHHHHHHHHHEEEEEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccccccccccccccccccccEEEEEEccccEEEEEEccccccccccccccHHHccHHHcEEEccccccccccccHHHcccccccEEEcccccccccccHHHHcccccEEEEcccccccccccccccccHHHHHHHHccccEEEccccccccccccHHHHHHcccccEEEEccccccccccccHHccccccEEEEEccccccccccHHHHcccccEEEEEccccccccccHHHccccccEEEEEcccccccccccccccccccEEEEEccccccccccHHHHccccccEEEcccccccccccHHHccccccEEEEEccccccccccccccccccEEEEEccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccHHHccccccEEEEcccccccccccHHHHHcccccEEEEcccccccccccccccccccEEEEccccccccccccccccccEEEEccccccccccccccccccccEEEEEEccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEEcccccccccccHHHccccccEEEEEcccccccccccHHHHHccccEEEEcccccccccccHHHHcccccEEEEEEcccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEcccccHHHHHHHcEEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccHHHEEEHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHEccc
Coil and Loop (DISEMBL)
mknslilsndsgfpstklsqwsshqssdccdwsgvrcdeaghvigldlswepiigglenatglfdlqYLQSLNLGftlfkgfqipsrlgnltnltylnlsqggfageipteISSLTRLVTLdlsgivpieYSYTVWIANLSLFLQNLTELTELhldrvdlsasgtEWCKAlsflpnlqvlslsgcdlsgpinhylaksrSLSVIRLHYNYGLSSGTEFLAHLTNlkaldlsecglqgkfpekilhvptletLDLSINQLLqgslpnfpknsslrDLILShtglsgtlpdsignlenltrvevsscnftgpippsmanltqlfhmdfssnhffgpipslhksrnlnnldlsfnnlsggisSTFWEQLLNLQIVVLGhnslsgsiprslfllpnlemlqlsnnqfenqlpeisnvsssvlfdldlsgnrlegpvpiSIFFELRNlytldlssnkfsrlklasskpraipilknqsqlsvldisdnqisgevpnwiwevgsgnlkfLNLSHNLVVslqepysisgirfldlhsnqlrgnipymspntsyvdysnnnftsipadignfmseTEYFYFVAANnslagvipesvckatnfqvldlsnnnlsgtipaclitkssstLEVLNLgrnnlngtlsdtifpgdcglqildlsgnqlqgvvpkslancnmlQVLDLRsnyisdnfpcwlrnASSLQVLVLRSnnfsghiscprnkvswplLQIVDLACNKFSGRLSQKWLLTMMVAETksgsevnhlgiempsnqfYEVRVTVTVKGIEIkllkvpniftsidfssnnfegpipvemGRFRSLYALNMshnaltgsipssfgnlkeiESLDlsmnnlsgkipAQLASLNFLSVLNLSYNnlvgkiptstqlqsfsptsyegnkglygppltnesqarppelppspppassgeidWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFRV
Flexible Loop (DISEMBL)
mknslilsndsgfpstklsqWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLasskpraipilknqsqlsvLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQARPPELPPSPPPASSGEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFRV
Low Complexity Region (SEG)
MKNSLILSNDSGFPSTKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRlgnltnltylnlSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKsrnlnnldlsfnnlsGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIsnvsssvlfdldlsGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVlnlgrnnlngtlSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQlaslnflsvlnlsynnlVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQARppelppspppassGEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFRV
Disordered region (IsUnstruct)
***************************DCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKL******AIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP**********************************************IDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRF**
Disordered Region (DISOPRED)
MKNSLILSNDSGFPSTKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMV***********LGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGP***************************FFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFRV
Disordered Region (DISEMBL)
******************************DWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLT****************ASSGEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFRV
Disordered Region (DISPRO)
MKNSLILSNDSGFPSTKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNES****************GEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFRV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKNSLILSNDSGFPSTKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQARPPELPPSPPPASSGEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	967	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.741	0.846	0.334	3e-88
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.831	0.643	0.314	2e-73
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.803	0.620	0.299	3e-71
Q9FL28	1173	LRR receptor-like serine/	no	no	0.670	0.552	0.329	7e-61
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.634	0.557	0.326	4e-60
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.654	0.574	0.312	2e-57
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.691	0.561	0.299	4e-56
O49318	1124	Probable leucine-rich rep	no	no	0.610	0.524	0.302	4e-54
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.680	0.579	0.306	1e-53
Q9LHP4	1141	Receptor-like protein kin	no	no	0.603	0.511	0.317	3e-51

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  327 bits (837), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 249/745 (33%), Positives = 386/745 (51%), Gaps = 28/745 (3%)

Query: 219 LAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKN-SSLRDLI 277
           L  L  L+ LDL+ C L G+ P  + ++  L  ++L  N+ + G +P    N + LR LI
Sbjct: 106 LFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFV-GEIPASIGNLNQLRHLI 164

Query: 278 LSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPS 337
           L++  L+G +P S+GNL  L  +E+ S    G IP S+ +L QL ++  +SN+  G IPS
Sbjct: 165 LANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPS 224

Query: 338 -LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEML 396
            L    NL +L L+ N L G + ++    L+ L+++   +NSLSG+IP S   L  L + 
Sbjct: 225 SLGNLSNLVHLVLTHNQLVGEVPASI-GNLIELRVMSFENNSLSGNIPISFANLTKLSIF 283

Query: 397 QLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRL 456
            LS+N F +  P   ++  ++ +  D+S N   GP P S+   + +L ++ L  N+F+  
Sbjct: 284 VLSSNNFTSTFPFDMSIFHNLEY-FDVSYNSFSGPFPKSLLL-IPSLESIYLQENQFT-- 339

Query: 457 KLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQE 516
                 P       + ++L  L +  N++ G +P  I  +   NL+ L++SHN       
Sbjct: 340 -----GPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLL--NLEELDISHNNFTGAIP 392

Query: 517 PY--SISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFV 574
           P    +  +  LDL  N L G +P      + +  S+N+F+S      N   E      +
Sbjct: 393 PTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFE----NTSQEEALIEEL 448

Query: 575 AAN-NSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGT 633
             N NS  G IP  +CK ++   LDLSNN  SG+IP+C I   S +++ LNLG NN +GT
Sbjct: 449 DLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSC-IRNFSGSIKELNLGDNNFSGT 507

Query: 634 LSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSL 693
           L D IF     L  LD+S NQL+G  PKSL NC  L+++++ SN I D FP WL +  SL
Sbjct: 508 LPD-IFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSL 566

Query: 694 QVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVN 753
            VL LRSN F G +      + +  L+I+D++ N FSG L   +        T +     
Sbjct: 567 HVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQ 626

Query: 754 HLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYA 813
           ++         Y   + +  KG+++   ++   F +IDFS N   G IP  +G  + L  
Sbjct: 627 YMTEFWRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRV 686

Query: 814 LNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKI 873
           LN+S NA T  IP    NL ++E+LD+S N LSG+IP  LA+L+FLS +N S+N L G +
Sbjct: 687 LNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPV 746

Query: 874 PTSTQLQSFSPTSYEGNKGLYG-PPLTNESQARPP--ELPPSPPPASSGEIDWFFIAMSI 930
           P  TQ Q    +S+  N GLYG   +  ++ A  P  +LP     A     +W   A++ 
Sbjct: 747 PRGTQFQRQKCSSFLDNPGLYGLEDICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAY 806

Query: 931 GFAVGFGAVVSPLMFSVQVNKWYND 955
           G  V  G V+    ++   ++W+ +
Sbjct: 807 GPGVLCGLVIGHF-YTSHNHEWFTE 830

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  278 bits (710), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 293/931 (31%), Positives = 438/931 (47%), Gaps = 127/931 (13%)

Query: 1   MKNSLILSNDSGFPSTKLSQWSSHQSSDCCDWSGVRCDEAG--HVIGLDLSWEPIIGGLE 58
           +K SL+ +     P   L QW+S  + + C W+GV CD  G   VI L+L+   + G + 
Sbjct: 33  VKKSLVTNPQEDDP---LRQWNS-DNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSIS 88

Query: 59  NATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRL 118
              G FD   L  L+L      G  IP+ L NLT+L  L L      GEIP+++ SL  +
Sbjct: 89  PWFGRFD--NLIHLDLSSNNLVG-PIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNI 145

Query: 119 VTL-----DLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSAS---GTEWCKA 170
            +L     +L G +P      V +  L+L    LT      L R+    S      + + 
Sbjct: 146 RSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEG 205

Query: 171 -----LSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNL 225
                L    +L V + +   L+G I   L +  +L ++ L  N         L  ++ L
Sbjct: 206 PIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQL 265

Query: 226 KALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLP-NFPKNSSLRDLILSHTGLS 284
           + L L    LQG  P+ +  +  L+TLDLS N  L G +P  F   S L DL+L++  LS
Sbjct: 266 QYLSLMANQLQGLIPKSLADLGNLQTLDLSANN-LTGEIPEEFWNMSQLLDLVLANNHLS 324

Query: 285 GTLPDSI-GNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP-SLHKSR 342
           G+LP SI  N  NL ++ +S    +G IP  ++    L  +D S+N   G IP +L +  
Sbjct: 325 GSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELV 384

Query: 343 NLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQ 402
            L +L L  N L G +S +    L NLQ +VL HN+L G +P+ +  L  LE+L L  N+
Sbjct: 385 ELTDLYLHNNTLEGTLSPSI-SNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENR 443

Query: 403 FENQLP-EISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASS 461
           F  ++P EI N +S  L  +D+ GN  EG +P SI   L+ L  L L  N     +L   
Sbjct: 444 FSGEIPQEIGNCTS--LKMIDMFGNHFEGEIPPSI-GRLKELNLLHLRQN-----ELVGG 495

Query: 462 KPRAIPILKNQSQLSVLDISDNQISGEVP-NWIWEVGSGNLKFLN--LSHNLVVSLQEPY 518
            P +   L N  QL++LD++DNQ+SG +P ++ +  G   L   N  L  NL  SL    
Sbjct: 496 LPAS---LGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSL---I 549

Query: 519 SISGIRFLDLHSNQLRGNIPYMSPNTSYV--DYSNNNFT-SIPADIGNFMSETEYFYFVA 575
           S+  +  ++L  N+L G I  +  ++SY+  D +NN F   IP ++GN            
Sbjct: 550 SLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGN---SQNLDRLRL 606

Query: 576 ANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLS 635
             N L G IP ++ K     +LD+S+N L+GTIP  L+                      
Sbjct: 607 GKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKK------------------ 648

Query: 636 DTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQV 695
                    L  +DL+ N L G +P  L   + L  L L SN   ++ P  L N + L V
Sbjct: 649 ---------LTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLV 699

Query: 696 LVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHL 755
           L L  N+ +G I  P+   +   L +++L  N+FSG L Q      M   +K        
Sbjct: 700 LSLDGNSLNGSI--PQEIGNLGALNVLNLDKNQFSGSLPQA-----MGKLSK-------- 744

Query: 756 GIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLY-AL 814
                    YE+R+                       S N+  G IPVE+G+ + L  AL
Sbjct: 745 --------LYELRL-----------------------SRNSLTGEIPVEIGQLQDLQSAL 773

Query: 815 NMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 874
           ++S+N  TG IPS+ G L ++E+LDLS N L+G++P  +  +  L  LN+S+NNL GK+ 
Sbjct: 774 DLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL- 832

Query: 875 TSTQLQSFSPTSYEGNKGLYGPPLTNESQAR 905
              Q   +   S+ GN GL G PL+  ++ R
Sbjct: 833 -KKQFSRWPADSFLGNTGLCGSPLSRCNRVR 862

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  270 bits (691), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 276/923 (29%), Positives = 421/923 (45%), Gaps = 146/923 (15%)

Query: 18  LSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFT 77
           L  W+S   S  C+W+GV C     +IGL+LS   + G +  + G F+   L  ++L   
Sbjct: 50  LRDWNSGSPS-YCNWTGVTCG-GREIIGLNLSGLGLTGSISPSIGRFN--NLIHIDLSSN 105

Query: 78  LFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTL-----DLSGIVPIEYS 132
              G    +     ++L  L+L     +G+IP+++ SL  L +L     +L+G +P  + 
Sbjct: 106 RLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFG 165

Query: 133 YTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPIN 192
             V +  L+L    LT L      R                L  LQ L L   +L GPI 
Sbjct: 166 NLVNLQMLALASCRLTGLIPSRFGR----------------LVQLQTLILQDNELEGPIP 209

Query: 193 HYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDL----------SECG-------- 234
             +    SL++    +N    S    L  L NL+ L+L          S+ G        
Sbjct: 210 AEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYL 269

Query: 235 ------LQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLP 288
                 LQG  P+++  +  L+TLDLS N L       F + + L  L+L+   LSG+LP
Sbjct: 270 NLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLP 329

Query: 289 DSI-GNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP-SLHKSRNLNN 346
            +I  N  +L ++ +S    +G IP  ++N   L  +D S+N   G IP SL +   L N
Sbjct: 330 KTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTN 389

Query: 347 LDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQ 406
           L L+ N+L G +SS+    L NLQ   L HN+L G +P+ +  L  LE++ L  N+F  +
Sbjct: 390 LYLNNNSLEGTLSSSI-SNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGE 448

Query: 407 LP-EISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRA 465
           +P EI N +   L ++D  GNRL G +P SI   L++L  L L  N     +L  + P +
Sbjct: 449 MPVEIGNCTR--LQEIDWYGNRLSGEIPSSI-GRLKDLTRLHLREN-----ELVGNIPAS 500

Query: 466 IPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRF 525
              L N  Q++V+D++DNQ+SG +P+        +  FL                + +  
Sbjct: 501 ---LGNCHQMTVIDLADNQLSGSIPS--------SFGFL----------------TALEL 533

Query: 526 LDLHSNQLRGNIP---YMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAG 582
             +++N L+GN+P       N + +++S+N F      I      + Y  F    N   G
Sbjct: 534 FMIYNNSLQGNLPDSLINLKNLTRINFSSNKFN---GSISPLCGSSSYLSFDVTENGFEG 590

Query: 583 VIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGD 642
            IP  + K+TN   L L  N  +G IP                      G +S+      
Sbjct: 591 DIPLELGKSTNLDRLRLGKNQFTGRIPRTF-------------------GKISE------ 625

Query: 643 CGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNN 702
             L +LD+S N L G++P  L  C  L  +DL +NY+S   P WL     L  L L SN 
Sbjct: 626 --LSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNK 683

Query: 703 FSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSN 762
           F G  S P    S   +  + L  N  +G + Q+  +  + A      E N L   +PS 
Sbjct: 684 FVG--SLPTEIFSLTNILTLFLDGNSLNGSIPQE--IGNLQALNALNLEENQLSGPLPST 739

Query: 763 QFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLY-ALNMSHNAL 821
                            + K+  +F  +  S N   G IPVE+G+ + L  AL++S+N  
Sbjct: 740 -----------------IGKLSKLF-ELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNF 781

Query: 822 TGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQS 881
           TG IPS+   L ++ESLDLS N L G++P Q+  +  L  LNLSYNNL GK+    Q   
Sbjct: 782 TGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQFSR 839

Query: 882 FSPTSYEGNKGLYGPPLTNESQA 904
           +   ++ GN GL G PL++ ++A
Sbjct: 840 WQADAFVGNAGLCGSPLSHCNRA 862

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  236 bits (602), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 238/722 (32%), Positives = 354/722 (49%), Gaps = 74/722 (10%)

Query: 219 LAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPN-FPKNSSLRDLI 277
           +A+LT L+ LDL+     GK P +I  +  L  L L +N    GS+P+   +  ++  L 
Sbjct: 92  IANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLN-YFSGSIPSGIWELKNIFYLD 150

Query: 278 LSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP- 336
           L +  LSG +P+ I    +L  +     N TG IP  + +L  L     + NH  G IP 
Sbjct: 151 LRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPV 210

Query: 337 SLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEML 396
           S+    NL +LDLS N L+G I   F   LLNLQ +VL  N L G IP  +    +L  L
Sbjct: 211 SIGTLANLTDLDLSGNQLTGKIPRDFG-NLLNLQSLVLTENLLEGDIPAEIGNCSSLVQL 269

Query: 397 QLSNNQFENQLP-EISNV-------------SSSV---------LFDLDLSGNRLEGPVP 433
           +L +NQ   ++P E+ N+             +SS+         L  L LS N L GP+ 
Sbjct: 270 ELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPIS 329

Query: 434 ISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWI 493
             I F L +L  L L SN F+        P++I  L+N   L+VL +  N ISGE+P  +
Sbjct: 330 EEIGF-LESLEVLTLHSNNFT-----GEFPQSITNLRN---LTVLTVGFNNISGELPADL 380

Query: 494 WEVGSGNLKFLNLSHNLVVSLQEPYSIS---GIRFLDLHSNQLRGNIP--YMSPNTSYVD 548
             +   NL+ L+   NL+     P SIS   G++ LDL  NQ+ G IP  +   N +++ 
Sbjct: 381 GLLT--NLRNLSAHDNLLTG-PIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFIS 437

Query: 549 YSNNNFT-SIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGT 607
              N+FT  IP DI N  S  E      A+N+L G +   + K    ++L +S N+L+G 
Sbjct: 438 IGRNHFTGEIPDDIFN-CSNLETLS--VADNNLTGTLKPLIGKLQKLRILQVSYNSLTGP 494

Query: 608 IPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCG----LQILDLSGNQLQGVVPKSL 663
           IP  +   +   L +L L  N   G +     P +      LQ L +  N L+G +P+ +
Sbjct: 495 IPREI--GNLKDLNILYLHSNGFTGRI-----PREMSNLTLLQGLRMYSNDLEGPIPEEM 547

Query: 664 ANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVD 723
            +  +L VLDL +N  S   P       SL  L L+ N F+G I  P +  S  LL   D
Sbjct: 548 FDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSI--PASLKSLSLLNTFD 605

Query: 724 LACNKFSGRLSQKWLLTMMVAETK--------SGSEVNHLG-IEMPSNQFYEVRVTVTVK 774
           ++ N  +G +  + L ++   +          +G+    LG +EM   Q  ++   +   
Sbjct: 606 ISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMV--QEIDLSNNLFSG 663

Query: 775 GIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGR-FRSLYALNMSHNALTGSIPSSFGNLK 833
            I   L    N+FT +DFS NN  G IP E+ +    + +LN+S N+ +G IP SFGN+ 
Sbjct: 664 SIPRSLQACKNVFT-LDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMT 722

Query: 834 EIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGL 893
            + SLDLS NNL+G+IP  LA+L+ L  L L+ NNL G +P S   ++ + +   GN  L
Sbjct: 723 HLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDL 782

Query: 894 YG 895
            G
Sbjct: 783 CG 784

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  233 bits (595), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 229/702 (32%), Positives = 341/702 (48%), Gaps = 88/702 (12%)

Query: 219 LAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLP-NFPKNSSLRDLI 277
           +  L +LK LDLS  GL GK P++I +  +LE L L+ NQ   G +P    K  SL +LI
Sbjct: 93  IGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQF-DGEIPVEIGKLVSLENLI 151

Query: 278 LSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPS 337
           + +  +SG+LP  IGNL +L+++   S N +G +P S+ NL +L       N   G +PS
Sbjct: 152 IYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPS 211

Query: 338 LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQ 397
                             GG  S        L ++ L  N LSG +P+ + +L  L  + 
Sbjct: 212 E----------------IGGCES--------LVMLGLAQNQLSGELPKEIGMLKKLSQVI 247

Query: 398 LSNNQFENQLP-EISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRL 456
           L  N+F   +P EISN +S  L  L L  N+L GP+P     EL +L +L+       R 
Sbjct: 248 LWENEFSGFIPREISNCTS--LETLALYKNQLVGPIPK----ELGDLQSLEFL--YLYRN 299

Query: 457 KLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFL---NLSHNLVVS 513
            L  + PR I    N S    +D S+N ++GE+P  +  +    L +L    L+  + V 
Sbjct: 300 GLNGTIPREI---GNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVE 356

Query: 514 LQEPYSISGIRFLDLHSNQLRGNIP----YMSPNTSYVDYSNNNFTSIPADIGNFMSETE 569
           L    ++  +  LDL  N L G IP    Y+        + N+   +IP  +G +   ++
Sbjct: 357 LS---TLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWY---SD 410

Query: 570 YFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNN 629
            +    ++N L+G IP  +C  +N  +L+L  NNLSG IP  + T    TL  L L RNN
Sbjct: 411 LWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITT--CKTLVQLRLARNN 468

Query: 630 LNGTLSDTIFPGDCGLQI----LDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPC 685
           L G      FP +   Q+    ++L  N+ +G +P+ + NC+ LQ L L  N  +   P 
Sbjct: 469 LVGR-----FPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPR 523

Query: 686 WLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAE 745
            +   S L  L + SN  +G +  P    +  +LQ +D+ CN FSG L          +E
Sbjct: 524 EIGMLSQLGTLNISSNKLTGEV--PSEIFNCKMLQRLDMCCNNFSGTLP---------SE 572

Query: 746 TKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEM 805
             S  ++  L +   SN      + V +  +        +  T +    N F G IP E+
Sbjct: 573 VGSLYQLELLKL---SNNNLSGTIPVALGNL--------SRLTELQMGGNLFNGSIPREL 621

Query: 806 GRFRSL-YALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNL 864
           G    L  ALN+S+N LTG IP    NL  +E L L+ NNLSG+IP+  A+L+ L   N 
Sbjct: 622 GSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNF 681

Query: 865 SYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQARP 906
           SYN+L G IP    L++ S +S+ GN+GL GPPL    Q +P
Sbjct: 682 SYNSLTGPIPL---LRNISMSSFIGNEGLCGPPLNQCIQTQP 720

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  224 bits (571), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 224/717 (31%), Positives = 341/717 (47%), Gaps = 84/717 (11%)

Query: 218 FLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLP-NFPKNSSLRDL 276
            +  L  L+ L++S   + G  P+ +    +LE LDL  N+   G +P       +L+ L
Sbjct: 86  LICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRF-HGVIPIQLTMIITLKKL 144

Query: 277 ILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP 336
            L    L G++P  IGNL +L  + + S N TG IPPSMA L QL  +    N F G IP
Sbjct: 145 YLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIP 204

Query: 337 S-LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEM 395
           S +    +L  L L+ N L G +     E+L NL  ++L  N LSG IP S+  +  LE+
Sbjct: 205 SEISGCESLKVLGLAENLLEGSLPKQL-EKLQNLTDLILWQNRLSGEIPPSVGNISRLEV 263

Query: 396 LQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSR 455
           L L  N F   +P                         I    +++ LY   L +N+   
Sbjct: 264 LALHENYFTGSIPR-----------------------EIGKLTKMKRLY---LYTNQ--- 294

Query: 456 LKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSL- 514
             L    PR I  L + +++   D S+NQ++G +P     +   NLK L+L  N+++   
Sbjct: 295 --LTGEIPREIGNLIDAAEI---DFSENQLTGFIPKEFGHIL--NLKLLHLFENILLGPI 347

Query: 515 -QEPYSISGIRFLDLHSNQLRGNIPYMSPNTSY-VD---YSNNNFTSIPADIGNFMSETE 569
            +E   ++ +  LDL  N+L G IP       Y VD   + N     IP  IG +   + 
Sbjct: 348 PRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFY---SN 404

Query: 570 YFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNN 629
           +     + NSL+G IP   C+     +L L +N LSG IP  L  K+  +L  L LG N 
Sbjct: 405 FSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDL--KTCKSLTKLMLGDNQ 462

Query: 630 LNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRN 689
           L G+L   +F     L  L+L  N L G +   L     L+ L L +N  +   P  + N
Sbjct: 463 LTGSLPIELFNLQ-NLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGN 521

Query: 690 ASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSG 749
            + +    + SN  +GHI  P+   S   +Q +DL+ NKFSG ++Q+ L  ++  E    
Sbjct: 522 LTKIVGFNISSNQLTGHI--PKELGSCVTIQRLDLSGNKFSGYIAQE-LGQLVYLEILRL 578

Query: 750 SEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFR 809
           S+ N L  E+P + F ++      + +E++L              N     IPVE+G+  
Sbjct: 579 SD-NRLTGEIP-HSFGDL-----TRLMELQL------------GGNLLSENIPVELGKLT 619

Query: 810 SL-YALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 868
           SL  +LN+SHN L+G+IP S GNL+ +E L L+ N LSG+IPA + +L  L + N+S NN
Sbjct: 620 SLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNN 679

Query: 869 LVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQARPPELPPSPPPASSGEIDWFF 925
           LVG +P +   Q    +++ GN GL     +  S  +P        P S  +++W  
Sbjct: 680 LVGTVPDTAVFQRMDSSNFAGNHGLCN---SQRSHCQP------LVPHSDSKLNWLI 727

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  220 bits (560), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 241/804 (29%), Positives = 369/804 (45%), Gaps = 135/804 (16%)

Query: 221 HLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPN--FPKNSSLRDLIL 278
           +L +L+ LDLS   L G  P  +  +P L  LDLS N    GSLP   F    +L  L +
Sbjct: 111 NLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDNHF-SGSLPPSFFISLPALSSLDV 169

Query: 279 SHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPS- 337
           S+  LSG +P  IG L NL+ + +   +F+G IP  + N++ L +    S  F GP+P  
Sbjct: 170 SNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKE 229

Query: 338 LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQ 397
           + K ++L  LDLS+N L   I  +F E L NL I+ L    L G IP  L    +L+ L 
Sbjct: 230 ISKLKHLAKLDLSYNPLKCSIPKSFGE-LHNLSILNLVSAELIGLIPPELGNCKSLKSLM 288

Query: 398 LSNNQFENQLP-EISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRL 456
           LS N     LP E+S +    L       N+L G +P S   + + L +L L++N+FS  
Sbjct: 289 LSFNSLSGPLPLELSEIP---LLTFSAERNQLSGSLP-SWMGKWKVLDSLLLANNRFS-- 342

Query: 457 KLASSKPRAI---PILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVV- 512
                 P  I   P+LK+      L ++ N +SG +P  +   GSG+L+ ++LS NL+  
Sbjct: 343 ---GEIPHEIEDCPMLKH------LSLASNLLSGSIPREL--CGSGSLEAIDLSGNLLSG 391

Query: 513 SLQEPYS-ISGIRFLDLHSNQLRGNIP---YMSPNTSYVDYSNNNFTS------------ 556
           +++E +   S +  L L +NQ+ G+IP   +  P  + +D  +NNFT             
Sbjct: 392 TIEEVFDGCSSLGELLLTNNQINGSIPEDLWKLPLMA-LDLDSNNFTGEIPKSLWKSTNL 450

Query: 557 -------------IPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNN 603
                        +PA+IGN  S       V ++N L G IP  + K T+  VL+L+ N 
Sbjct: 451 MEFTASYNRLEGYLPAEIGNAASLKR---LVLSDNQLTGEIPREIGKLTSLSVLNLNANM 507

Query: 604 LSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTI------------------------- 638
             G IP  L     ++L  L+LG NNL G + D I                         
Sbjct: 508 FQGKIPVEL--GDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPS 565

Query: 639 -------FPGDCGLQ---ILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLR 688
                   P    LQ   I DLS N+L G +P+ L  C +L  + L +N++S   P  L 
Sbjct: 566 AYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLS 625

Query: 689 NASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKS 748
             ++L +L L  N  +G I  P+   +   LQ ++LA N+ +G + + +   ++ +  K 
Sbjct: 626 RLTNLTILDLSGNALTGSI--PKEMGNSLKLQGLNLANNQLNGHIPESF--GLLGSLVKL 681

Query: 749 GSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRF 808
               N L   +P++                  L      T +D S NN  G +  E+   
Sbjct: 682 NLTKNKLDGPVPAS------------------LGNLKELTHMDLSFNNLSGELSSELSTM 723

Query: 809 RSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 868
             L  L +  N  TG IPS  GNL ++E LD+S N LSG+IP ++  L  L  LNL+ NN
Sbjct: 724 EKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNN 783

Query: 869 LVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQARPPELPPSPPPASSGEIDWFFIAM 928
           L G++P+    Q  S     GNK L G  + ++ +    +L  +          W    +
Sbjct: 784 LRGEVPSDGVCQDPSKALLSGNKELCGRVVGSDCKIEGTKLRSA----------WGIAGL 833

Query: 929 SIGFAVGFGAVVSPLMFSVQVNKW 952
            +GF +    +V   +FS++  +W
Sbjct: 834 MLGFTI----IVFVFVFSLR--RW 851

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  214 bits (544), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 214/707 (30%), Positives = 322/707 (45%), Gaps = 117/707 (16%)

Query: 219 LAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLP-NFPKNSSLRDLI 277
           +  L NL  L+L+   L G  P +I +   LE + L+ NQ   GS+P    K S LR   
Sbjct: 105 IGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQF-GGSIPVEINKLSQLRSFN 163

Query: 278 LSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPS 337
           + +  LSG LP+ IG+L NL  +   + N TGP+P S+ NL +L       N F G IP 
Sbjct: 164 ICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIP- 222

Query: 338 LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQ 397
                                  T   + LNL+++ L  N +SG +P+ + +L  L+ + 
Sbjct: 223 -----------------------TEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVI 259

Query: 398 LSNNQFENQLP-EISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRL 456
           L  N+F   +P +I N++S  L  L L GN L GP+P  I   +++L  L L  N+    
Sbjct: 260 LWQNKFSGFIPKDIGNLTS--LETLALYGNSLVGPIPSEIG-NMKSLKKLYLYQNQ---- 312

Query: 457 KLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQE 516
            L  + P+ +  L   S++  +D S+N +SGE+P                         E
Sbjct: 313 -LNGTIPKELGKL---SKVMEIDFSENLLSGEIP------------------------VE 344

Query: 517 PYSISGIRFLDLHSNQLRGNIP---YMSPNTSYVDYSNNNFTS-IPADIGNFMSETEYFY 572
              IS +R L L  N+L G IP       N + +D S N+ T  IP    N  S  +   
Sbjct: 345 LSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQL 404

Query: 573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNG 632
           F   +NSL+GVIP+ +   +   V+D S N LSG IP  +  +S+  L +LNLG N + G
Sbjct: 405 F---HNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSN--LILLNLGSNRIFG 459

Query: 633 TLSDTI-------------------FPGD----CGLQILDLSGNQLQGVVPKSLANCNML 669
            +   +                   FP +      L  ++L  N+  G +P  +  C  L
Sbjct: 460 NIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKL 519

Query: 670 QVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKF 729
           Q L L +N  S N P  +   S+L    + SN+ +G I  P    +  +LQ +DL+ N F
Sbjct: 520 QRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPI--PSEIANCKMLQRLDLSRNSF 577

Query: 730 SGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTS 789
            G L  +               ++ L I   S   +   +  T+  +           T 
Sbjct: 578 IGSLPPEL------------GSLHQLEILRLSENRFSGNIPFTIGNL--------THLTE 617

Query: 790 IDFSSNNFEGPIPVEMGRFRSL-YALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGK 848
           +    N F G IP ++G   SL  A+N+S+N  +G IP   GNL  +  L L+ N+LSG+
Sbjct: 618 LQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGE 677

Query: 849 IPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYG 895
           IP    +L+ L   N SYNNL G++P +   Q+ + TS+ GNKGL G
Sbjct: 678 IPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCG 724

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  212 bits (540), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 213/695 (30%), Positives = 331/695 (47%), Gaps = 37/695 (5%)

Query: 228 LDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLP-NFPKNSSLRDLILSHTGLSGT 286
           + L    L G+  ++I  +  L  L L  N    G++P +    + L  + L +  LSG 
Sbjct: 73  IRLPRLQLSGRISDRISGLRMLRKLSLRSNSF-NGTIPTSLAYCTRLLSVFLQYNSLSGK 131

Query: 287 LPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPS-LHKSRNLN 345
           LP ++ NL +L    V+    +G IP  + +  Q   +D SSN F G IPS L     L 
Sbjct: 132 LPPAMRNLTSLEVFNVAGNRLSGEIPVGLPSSLQF--LDISSNTFSGQIPSGLANLTQLQ 189

Query: 346 NLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFEN 405
            L+LS+N L+G I ++    L +LQ + L  N L G++P ++    +L  L  S N+   
Sbjct: 190 LLNLSYNQLTGEIPASLG-NLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGG 248

Query: 406 QLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRA 465
            +P         L  L LS N   G VP S+F    +L  + L  N FS +    +    
Sbjct: 249 VIPAAYGALPK-LEVLSLSNNNFSGTVPFSLFCN-TSLTIVQLGFNAFSDIVRPETTANC 306

Query: 466 IPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRF 525
                 ++ L VLD+ +N+ISG  P W+  + S  LK L++S NL  S + P  I  ++ 
Sbjct: 307 ------RTGLQVLDLQENRISGRFPLWLTNILS--LKNLDVSGNLF-SGEIPPDIGNLKR 357

Query: 526 LD---LHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVA-ANNSLA 581
           L+   L +N L G IP        +D  +    S+   I  F+   +    ++   NS +
Sbjct: 358 LEELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFS 417

Query: 582 GVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPG 641
           G +P S+      + L+L  NNL+G+ P  L+  +S  L  L+L  N  +G +  +I   
Sbjct: 418 GYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTS--LSELDLSGNRFSGAVPVSI-SN 474

Query: 642 DCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSN 701
              L  L+LSGN   G +P S+ N   L  LDL    +S   P  L    ++QV+ L+ N
Sbjct: 475 LSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGN 534

Query: 702 NFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPS 761
           NFSG +  P    S   L+ V+L+ N FSG + Q +    ++         NH+   +P 
Sbjct: 535 NFSGVV--PEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSD--NHISGSIPP 590

Query: 762 N-------QFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYAL 814
                   +  E+R    +  I   L ++P +   +D   NN  G IP E+ +  SL +L
Sbjct: 591 EIGNCSALEVLELRSNRLMGHIPADLSRLPRL-KVLDLGQNNLSGEIPPEISQSSSLNSL 649

Query: 815 NMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNF-LSVLNLSYNNLVGKI 873
           ++ HN L+G IP SF  L  +  +DLS+NNL+G+IPA LA ++  L   N+S NNL G+I
Sbjct: 650 SLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEI 709

Query: 874 PTSTQLQSFSPTSYEGNKGLYGPPLTNESQARPPE 908
           P S   +  + + + GN  L G PL    ++   E
Sbjct: 710 PASLGSRINNTSEFSGNTELCGKPLNRRCESSTAE 744

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  204 bits (518), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 212/667 (31%), Positives = 327/667 (49%), Gaps = 83/667 (12%)

Query: 253 DLSINQL-LQGSLP-NFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGP 310
           D+ I  + LQ SLP N P   SL+ L +S   L+GTLP+S+G+   L  +++SS    G 
Sbjct: 85  DIDIESVPLQLSLPKNLPAFRSLQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGD 144

Query: 311 IPPSMANLTQLFHMDFSSNHFFGPI-PSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNL 369
           IP S++ L  L  +  +SN   G I P + K   L +L L F+NL  G   T   +L  L
Sbjct: 145 IPWSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLIL-FDNLLTGSIPTELGKLSGL 203

Query: 370 QIVVLGHNS-LSGSIPRSLFLLPNLEMLQLSNNQFENQLP----EISNVSSSVLFDLDLS 424
           +++ +G N  +SG IP  +    NL +L L+       LP    ++  + +  ++   +S
Sbjct: 204 EVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMIS 263

Query: 425 GNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQ 484
           G   E P  +    EL +L+  + S        L+ S PR I  L   ++L  L +  N 
Sbjct: 264 G---EIPSDLGNCSELVDLFLYENS--------LSGSIPREIGQL---TKLEQLFLWQNS 309

Query: 485 ISGEVPNWIWEVGS-GNLKFLNLSHNLVVSLQEPYSISGIRFLD---LHSNQLRGNIPYM 540
           + G +P    E+G+  NLK ++LS NL +S   P SI  + FL+   +  N+  G+IP  
Sbjct: 310 LVGGIPE---EIGNCSNLKMIDLSLNL-LSGSIPSSIGRLSFLEEFMISDNKFSGSIPTT 365

Query: 541 SPNTS---YVDYSNNNFTS-IPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQV 596
             N S    +    N  +  IP+++G     T+   F A +N L G IP  +   T+ Q 
Sbjct: 366 ISNCSSLVQLQLDKNQISGLIPSELGTL---TKLTLFFAWSNQLEGSIPPGLADCTDLQA 422

Query: 597 LDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDC-GLQILDLSGNQL 655
           LDLS N+L+GTIP+ L    +  L  L L  N+L+G +   I  G+C  L  L L  N++
Sbjct: 423 LDLSRNSLTGTIPSGLFMLRN--LTKLLLISNSLSGFIPQEI--GNCSSLVRLRLGFNRI 478

Query: 656 QGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVS 715
            G +P  + +   +  LD  SN +    P  + + S LQ++ L +N+  G +  P + +S
Sbjct: 479 TGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLS 538

Query: 716 WPLLQIVDLACNKFSGRLSQKWLLTMMVAETK--------SGSEVNHLGIEMPSNQFYEV 767
              LQ++D++ N+FSG++     L  +V+  K        SGS    LG+          
Sbjct: 539 G--LQVLDVSANQFSGKIPAS--LGRLVSLNKLILSKNLFSGSIPTSLGM---------- 584

Query: 768 RVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSL-YALNMSHNALTGSIP 826
                  G+++           +D  SN   G IP E+G   +L  ALN+S N LTG IP
Sbjct: 585 -----CSGLQL-----------LDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIP 628

Query: 827 SSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 886
           S   +L ++  LDLS N L G + A LA++  L  LN+SYN+  G +P +   +  SP  
Sbjct: 629 SKIASLNKLSILDLSHNMLEGDL-APLANIENLVSLNISYNSFSGYLPDNKLFRQLSPQD 687

Query: 887 YEGNKGL 893
            EGNK L
Sbjct: 688 LEGNKKL 694

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	967
224139184	1032	predicted protein [Populus trichocarpa]	0.974	0.912	0.516	0.0
359481304	1057	PREDICTED: LRR receptor-like serine/thre	0.974	0.891	0.511	0.0
359481300	1054	PREDICTED: leucine-rich repeat receptor	0.971	0.890	0.508	0.0
359481298	1070	PREDICTED: LRR receptor-like serine/thre	0.971	0.877	0.507	0.0
214011438	1128	GbVe [Gossypium barbadense]	0.981	0.841	0.488	0.0
147806063	1032	hypothetical protein VITISV_032508 [Viti	0.973	0.911	0.497	0.0
359481296	1075	PREDICTED: receptor-like protein 12-like	0.968	0.871	0.506	0.0
359481293	1197	PREDICTED: leucine-rich repeat receptor	0.972	0.785	0.499	0.0
37956237	1051	resistance protein SlVe1 precursor [Sola	0.970	0.892	0.48	0.0
237899605	1139	verticillium wilt disease resistance pro	0.973	0.826	0.482	0.0

>gi|224139184|ref|XP_002323001.1| predicted protein [Populus trichocarpa] gi|222867631|gb|EEF04762.1| predicted protein [Populus trichocarpa]

 Score =  905 bits (2338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/1015 (51%), Positives = 670/1015 (66%), Gaps = 73/1015 (7%)

Query: 1    MKNSLILSNDSGFPSTKLSQWSSHQSSDCCDWSGVRCDE-AGHVIGLDLSWEPIIGGLEN 59
            +KN+L+        S KL +W+S  + DCCDW G+ CDE +G VI LDLS E I GGL +
Sbjct: 36   LKNTLVFDQSV---SAKLVKWNS--TPDCCDWPGITCDEGSGRVISLDLSSERITGGLGD 90

Query: 60   ATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLV 119
            ++GL+ LQ+LQSLNL F  F    +P    NLT+L  LNLS  GF G+IP + S LT+LV
Sbjct: 91   SSGLYRLQFLQSLNLSFNSFST-ALPVGFANLTDLISLNLSNAGFTGQIPNDFSKLTKLV 149

Query: 120  TLDLSGI-VPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSF-LPNL 177
            +LDLS +  P   +  +   N +  +QNLT LTEL LD V++SA G +WCKALS  LPNL
Sbjct: 150  SLDLSALSFPGSPALKLEQPNFATLVQNLTHLTELLLDGVNISAHGNDWCKALSSSLPNL 209

Query: 178  QVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQG 237
            +VLS+S C LSGP++  LAK +SLS+IRL  N   +   EFLA+ + L AL LS C L G
Sbjct: 210  KVLSMSNCYLSGPLDASLAKLQSLSIIRLSGNNLSTPVPEFLANYSKLTALQLSSCQLNG 269

Query: 238  KFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENL 297
             FP+ I  VPTLE LDL  N+ LQGS P F +N SLR L+LS+T  SGTLP SIG L+ L
Sbjct: 270  IFPQAIFQVPTLEILDLQYNKFLQGSFPEFHQNLSLRTLLLSNTNFSGTLPQSIGELQKL 329

Query: 298  TRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGG 357
            +R+E++  NFTGPIP SMANLTQLF++D  SN F G +PS  KS+NL  +D+S N L G 
Sbjct: 330  SRIELAGNNFTGPIPNSMANLTQLFYLDLLSNKFTGTLPSFRKSKNLTYVDVSHNQLKGE 389

Query: 358  ISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSV 417
            I S  WE L +L  V LG+N+ +GSIP SLF +P+L+ +QLSNN+F  Q+PE  NVSSS+
Sbjct: 390  IPSGHWEGLRSLTYVDLGYNAFNGSIPSSLFAIPSLQKIQLSNNRFGGQIPEFPNVSSSL 449

Query: 418  LFDLDLSGNRLEGPVPISIFF------------------------ELRNLYTLDLSSN-- 451
            L  LDLS N+LEGP+P S+F                         +L NL TL LS N  
Sbjct: 450  LDTLDLSSNKLEGPIPSSVFGLAKLNVLELSSNMLNDTLQLHWIQKLPNLTTLGLSYNNL 509

Query: 452  ---------------KFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEV 496
                           +  +L+LAS      P L+NQS+L  LD+SDNQI+G VP WI E+
Sbjct: 510  TVKSSGGNSNMSSLPQIKKLRLASCDLGMFPDLRNQSKLFHLDLSDNQITGPVPGWISEL 569

Query: 497  GSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTS 556
                L++LNLS NL+V L+ P S+ G+  LDLH NQL+G+IP      +YVDYS+N F+S
Sbjct: 570  IL--LQYLNLSRNLLVDLERPLSLPGLSILDLHHNQLQGSIPVPPSYITYVDYSSNKFSS 627

Query: 557  -IPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITK 615
             IP +IGN+ + T   +F  +NN L G IP+S+C     QVLDLSNN+LSG IP+CLI K
Sbjct: 628  FIPPNIGNYFNFT--LFFSLSNNHLTGEIPQSICNTEWLQVLDLSNNSLSGAIPSCLIDK 685

Query: 616  SSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLR 675
               TL VLNL RNN +G + D  FP  C L+ LDLSGN LQG VPKSLANC ML+VLDL 
Sbjct: 686  -IKTLRVLNLRRNNFDGIIPDK-FPRSCELKTLDLSGNNLQGQVPKSLANCTMLEVLDLG 743

Query: 676  SNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQ 735
            +N I+D+FPC L++ SS +VLVLR+N FSGHI CP+ + +WP LQIVDLA N F G LS 
Sbjct: 744  NNQINDSFPCLLKSISSFRVLVLRNNMFSGHIGCPQIEGTWPRLQIVDLAFNHFIGNLSD 803

Query: 736  KWLLT---MMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDF 792
              L T   MM    +S   + +  +++ +  +Y+  +TVTVKG+E++L+K+  +FTS DF
Sbjct: 804  ICLKTWEGMMEGGNRSLDHIRYDPLQLTNGLYYQDSITVTVKGLELELVKILTVFTSADF 863

Query: 793  SSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQ 852
            SSNNFEGPIP  +G+F +LY LN+SHN LTG IPSS GNL ++ESLDLS N LSG+IPAQ
Sbjct: 864  SSNNFEGPIPDAIGKFNALYVLNLSHNVLTGQIPSSLGNLSQLESLDLSSNQLSGQIPAQ 923

Query: 853  LASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPL------TNESQARP 906
            L SL FLSVLNLSYN LVG+IPT  Q  +FS  S+EGN+GL GPPL      TNES +  
Sbjct: 924  LTSLTFLSVLNLSYNRLVGRIPTGNQFLTFSSDSFEGNQGLCGPPLKLACSNTNESNS-- 981

Query: 907  PELPPSPPPASSGEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFI 961
                 +       E DW FI   +GF +G G VV+PL+FS ++NK Y+D I K +
Sbjct: 982  -----TRGSNQRKEFDWQFIVPGLGFGLGSGIVVAPLLFSKKINKCYDDRIDKIL 1031

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481304|ref|XP_002270356.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/1003 (51%), Positives = 653/1003 (65%), Gaps = 61/1003 (6%)

Query: 15   STKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNL 74
            S KL  W  +QS+DCC W GV  D  GHV+ LDLS E I  G  +++ +F LQYLQSLNL
Sbjct: 39   SNKLVSW--NQSADCCSWGGVTWDATGHVVALDLSSEFISDGFYSSSSIFSLQYLQSLNL 96

Query: 75   GFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPI--EYS 132
                F   +IPS    L NLTYLNLS+ GF+G+IP EIS LTRLVT+D+S    +    +
Sbjct: 97   ANNTFFSSEIPSGFDKLGNLTYLNLSKAGFSGQIPIEISRLTRLVTIDISSFNDLFGTPA 156

Query: 133  YTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSF-LPNLQVLSLSGCDLSGPI 191
              +   NL + +QNL EL ELHLD VD+SA G EWC+ALS  +PNL+VLSLS C LSGPI
Sbjct: 157  PKLEQPNLRMLVQNLKELRELHLDGVDISAQGKEWCQALSSSVPNLRVLSLSRCFLSGPI 216

Query: 192  NHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLET 251
            +  L K RSLSV+ L+YN   +   +FLA+ +NL +L LS C L G FPE I  VP L+ 
Sbjct: 217  DSSLVKLRSLSVVHLNYNNFTAPVPDFLANFSNLTSLSLSFCRLYGTFPENIFQVPALQI 276

Query: 252  LDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPI 311
            LDLS NQLL G+LP FP+  SLR L+LS T  SG +PDSIG LE L+ +E++ CNF+GPI
Sbjct: 277  LDLSNNQLLWGALPEFPQGGSLRTLVLSDTKFSGHMPDSIGKLEMLSWIELARCNFSGPI 336

Query: 312  PPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQI 371
            P S+ANLT+L ++D SSN F G IPS   S+NL +++LS N  +G I S  WE  LNL  
Sbjct: 337  PSSIANLTRLLYLDLSSNGFTGSIPSFRSSKNLTHINLSRNYFTGQIISHHWEGFLNLLN 396

Query: 372  VVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGP 431
            + L  N L G +P SLF  P+L+ +QL+ NQF  QL E S VSS VL  LDLS N L+G 
Sbjct: 397  LDLHQNLLHGDLPLSLFSHPSLQKIQLNQNQFSGQLNEFSVVSSFVLEVLDLSSNNLQGS 456

Query: 432  VPISI------------------------FFELRNLYTLDLSSNK--------------- 452
            +P+S+                        F EL NL TL LS NK               
Sbjct: 457  IPLSVFDLRALRVLELSFNNVSGTLELSKFQELGNLTTLSLSHNKLSINVDSFNSSFSKS 516

Query: 453  --FSRLKLASSKPRAIPILKNQSQ-LSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN 509
              F+ LKLAS   +  P L+N S+ L  LD+S NQI GE+P+WIW +G+  L  LNLSHN
Sbjct: 517  PHFTTLKLASCNLKRFPDLRNNSKFLGYLDLSQNQIQGEIPHWIWMIGNSFLVHLNLSHN 576

Query: 510  LVVSLQEPY-SISGIRF-LDLHSNQLRGNIPYMSPNTSYVDYSNNNF-TSIPADIGNFMS 566
            L+V LQEP+ ++    F LDLHSN LRG IP     +SYVDYSNN+F +SIP DIG+++S
Sbjct: 577  LLVDLQEPFPNLPPYLFTLDLHSNLLRGRIPTPPQFSSYVDYSNNSFISSIPEDIGSYIS 636

Query: 567  ETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLG 626
                 +F  + N+++G+IPES+C ATN QVLDLS+N LSG IP+CLI   +  L VLNL 
Sbjct: 637  YV--IFFSLSKNNISGIIPESICNATNVQVLDLSDNALSGEIPSCLIENEA--LAVLNLR 692

Query: 627  RNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCW 686
            RN  +GT+S   FPG+C L  LDL+GN L+G +P+S+ANC  L+VL+L +N I D FPCW
Sbjct: 693  RNMFSGTISGN-FPGNCILHTLDLNGNLLEGTIPESVANCKELEVLNLGNNRIDDKFPCW 751

Query: 687  LRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLT---MMV 743
            L+N SSL+VLVLR+N F G I CP +  +WP+LQIVDLA N FSG+L  K  LT   MM 
Sbjct: 752  LKNMSSLRVLVLRANRFHGPIGCPNSNSTWPMLQIVDLAYNNFSGKLPAKGFLTWKAMMA 811

Query: 744  AETKSGSEVNHLGIEMP--SNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPI 801
            +E +  S++NH+  ++   S  +Y+  VTVT KG E++L+KV  +FTSIDFSSN FEG I
Sbjct: 812  SEDEVQSKLNHIQFKILEFSELYYQDAVTVTSKGQEMELVKVLTLFTSIDFSSNKFEGQI 871

Query: 802  PVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSV 861
            P EMG F SLY LN+S N  TG IPSS G L+++ESLDLS N+LSGKIP +L SL FLSV
Sbjct: 872  PEEMGNFISLYVLNLSGNGFTGQIPSSMGQLRQLESLDLSRNHLSGKIPTELVSLTFLSV 931

Query: 862  LNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPL-TNESQARPPELPPSPPPASSGE 920
            L+LS+N LVG IP+  Q Q+FS  S++ NKGL G PL  N  +  PP        AS  E
Sbjct: 932  LDLSFNQLVGAIPSGNQFQTFSEASFQVNKGLCGQPLNVNCEEDTPPPTFDDRHSASRME 991

Query: 921  IDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYR 963
            I W +IA  IGF  G G V+ PL+F  +  + Y   + + + R
Sbjct: 992  IKWEYIAPEIGFVTGLGIVIWPLVFCRRWRQCYYKRVDRILSR 1034

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481300|ref|XP_002269481.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  877 bits (2266), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1002 (50%), Positives = 644/1002 (64%), Gaps = 63/1002 (6%)

Query: 15   STKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNL 74
            S KL  W   QS+DCC W GV  D  G V+ LDLS E I G L +++ +F LQYLQSLNL
Sbjct: 39   SNKLVSWI--QSADCCSWGGVTWDATGRVVSLDLSSEFISGELNSSSSIFSLQYLQSLNL 96

Query: 75   GFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYT 134
                F   QIP+    L NLTYLNLS  GF+G+IP EIS LT+LVT+DLS +  I     
Sbjct: 97   ANNTFSS-QIPAEFHKLGNLTYLNLSNAGFSGQIPIEISYLTKLVTIDLSSLYFITGIPK 155

Query: 135  VWIAN--LSLFLQNLTELTELHLDRVDLSASGTEWCKALSF-LPNLQVLSLSGCDLSGPI 191
            + + N  L + +QNL +L ELHLD V +SA G EWC ALS  +PNLQVLSL  C LSGPI
Sbjct: 156  LKLENPNLRMLVQNLKKLRELHLDGVIISAQGKEWCWALSSSVPNLQVLSLYSCHLSGPI 215

Query: 192  NHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLET 251
            ++ L K +SLS IRL  N   +   EFL++ +NL  L LS CGL G FPEKI  VPTL+T
Sbjct: 216  HYSLKKLQSLSRIRLDDNNIAAPVPEFLSNFSNLTHLQLSSCGLYGTFPEKIFQVPTLQT 275

Query: 252  LDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPI 311
            LDLS N+LLQGSLP FP+   L  L+LS T  SG LP+SI NL+ L R+E++ C+F+GPI
Sbjct: 276  LDLSYNKLLQGSLPEFPQGGCLETLVLSVTKFSGKLPNSIANLKRLARIELADCDFSGPI 335

Query: 312  PPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQI 371
            P  MANLTQL ++DFS N F G IPS   S+NL  +DLS NNL+G ISS+ W   +NL  
Sbjct: 336  PTVMANLTQLVYLDFSHNKFSGAIPSFSLSKNLTLIDLSHNNLTGQISSSHWVGFVNLVT 395

Query: 372  VVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGP 431
            +   +NSL GS+P  LF LP+L+ ++L+NNQF     E    SS  +  LDLSGN LEGP
Sbjct: 396  IDFCYNSLYGSLPMPLFSLPSLQKIKLNNNQFSGPFGEFPATSSHPMDTLDLSGNNLEGP 455

Query: 432  VPISIFFELRNLYTLDLSSNKF-------------------------------------- 453
            +P+S+ F+L++L  LDLSSNKF                                      
Sbjct: 456  IPVSL-FDLQHLNILDLSSNKFNGTVELSQFQKLGNLTTLSLSYNNLSINPSRSNPTSPL 514

Query: 454  ----SRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN 509
                S LKLAS K R +P L +QS L +LD+S NQI G++PNWIW++G+G L  LNLSHN
Sbjct: 515  LPILSTLKLASCKLRTLPDLSSQSMLVILDLSQNQIPGKIPNWIWKIGNGFLSHLNLSHN 574

Query: 510  LVVSLQEPYS--ISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFT-SIPADIGNFMS 566
            L+  LQEP S     +  LDLHSNQLRG IP   P+++YVDYSNN FT SIP DIG +M+
Sbjct: 575  LLEGLQEPLSNLPPFLSTLDLHSNQLRGPIP-TPPSSTYVDYSNNRFTSSIPDDIGTYMN 633

Query: 567  ETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLG 626
             T +F    + N++ G+IP S+C A   QVLD S+N+LSG IP+CLI   +  L VLNL 
Sbjct: 634  VTVFFSL--SKNNITGIIPASICNAHYLQVLDFSDNSLSGKIPSCLI--ENGDLAVLNLR 689

Query: 627  RNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCW 686
            RN   GT+    FPG C LQ LDL+GN L+G +P+SLANC  L+VL+L +N ++D FPCW
Sbjct: 690  RNKFKGTIPGE-FPGHCLLQTLDLNGNLLEGKIPESLANCKALEVLNLGNNRMNDIFPCW 748

Query: 687  LRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWL---LTMMV 743
            L+N SSL+VLVLR+N F G I CP +  +WP+LQIVDLA N FSG L +K       MM 
Sbjct: 749  LKNISSLRVLVLRANKFHGPIGCPNSNSTWPMLQIVDLAWNNFSGVLPEKCFSNWRAMMA 808

Query: 744  AETKSGSEVNHLGIEMP--SNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPI 801
             E    S+ NHL  ++   S  +Y+  VTVT KG E++L+KV  +FTSIDFS NNF+G I
Sbjct: 809  GEDDVQSKSNHLRFKVLAFSQLYYQDAVTVTSKGQEMELVKVLTLFTSIDFSCNNFQGDI 868

Query: 802  PVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSV 861
            P ++G  + LY LN+S N  TG IPSS G L+++ESLDLS+N LSG+IPAQL+SLNFLSV
Sbjct: 869  PEDIGDLKLLYVLNLSGNGFTGQIPSSLGQLRQLESLDLSLNKLSGEIPAQLSSLNFLSV 928

Query: 862  LNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQARPPELPPSPPPASSGEI 921
            LNLS+N LVG+IPT  QLQ+FS  S+ GN+GL G PL    +   P         S   I
Sbjct: 929  LNLSFNGLVGRIPTGNQLQTFSENSFAGNRGLCGFPLNVSCEDATPPTFDGRHSGSRIAI 988

Query: 922  DWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYR 963
             W +IA  IGF  G G V+ PL+   +  K Y   +   + R
Sbjct: 989  KWDYIAPEIGFVTGLGIVIWPLVLCRRWRKCYYKHVDGILSR 1030

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481298|ref|XP_003632604.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  864 bits (2232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1000 (50%), Positives = 637/1000 (63%), Gaps = 61/1000 (6%)

Query: 15   STKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNL 74
            S+KL  W  + S DCC W GV  D  GHV+ LDLS + I GG  N + +F LQYLQSLNL
Sbjct: 59   SSKLVSW--NPSMDCCSWGGVTWDATGHVVALDLSSQSIYGGFNNTSSIFSLQYLQSLNL 116

Query: 75   GFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYT 134
                F   QIPS  G L NL YLNLS  GF+G+IP E+S LT+LVT+D S       +  
Sbjct: 117  ADNSFNSSQIPSGFGKLGNLMYLNLSNAGFSGQIPIEVSCLTKLVTIDFSVFYLGVPTLK 176

Query: 135  VWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSF-LPNLQVLSLSGCDLSGPINH 193
            +   NL + +QNLTEL EL+L+ V++SA G EWC+ALS  +PNLQVLSL  C LSGP++ 
Sbjct: 177  LENPNLRMLVQNLTELRELYLNGVNISAQGKEWCQALSSSVPNLQVLSLPSCYLSGPLDS 236

Query: 194  YLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLD 253
             L K RSLS IRL  N   +   EFLA+ +NL  L LS CGL G FPEKI  VPTL+ LD
Sbjct: 237  SLQKLRSLSSIRLDGNNFSAPVPEFLANFSNLTQLRLSSCGLNGTFPEKIFQVPTLQILD 296

Query: 254  LSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPP 313
            LS N+LL GSLP FP+N SL  L+L  T  SG +P+SIGNL+ LTR+E++ CNF+GPIP 
Sbjct: 297  LSNNKLLLGSLPEFPQNGSLETLVLPDTKFSGKVPNSIGNLKRLTRIELARCNFSGPIPN 356

Query: 314  SMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVV 373
            S ANL QL ++D S N F GPIP    S+NL  ++LS N L+G I S+  + L+NL I+ 
Sbjct: 357  STANLAQLVYLDLSENKFSGPIPPFSLSKNLTRINLSHNYLTGPIPSSHLDGLVNLVILD 416

Query: 374  LGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVP 433
            L  NSL+GS+P  LF LP+L+ +QLSNNQF   L + S V  SVL  LDLS N LEG +P
Sbjct: 417  LRDNSLNGSLPMPLFSLPSLQKIQLSNNQFSGPLSKFS-VVPSVLDTLDLSSNNLEGQIP 475

Query: 434  ISIFFELRNLYTLDLSSNKFS--------------------------------------- 454
            +SIF +L+ L  LDLSSNKF+                                       
Sbjct: 476  VSIF-DLQCLNILDLSSNKFNGTVLLSSFQKLGNLTTLSLSYNNLSINSSVGNPTLPLLL 534

Query: 455  ---RLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLV 511
                LKLAS K R +P L  QS+L+ LD+SDNQI G +PNWIW++G+ +L  LNLSHNL+
Sbjct: 535  NLTTLKLASCKLRTLPDLSTQSRLTYLDLSDNQICGNIPNWIWKIGNCSLAHLNLSHNLL 594

Query: 512  VSLQEPYS--ISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTS-IPADIGNFMSET 568
              LQEP S     +  LDLHSNQL G IP      SYVDYS+N FTS IP  IG ++S T
Sbjct: 595  EDLQEPLSNFTPYLSILDLHSNQLHGQIPTPPQFCSYVDYSDNRFTSSIPDGIGVYISFT 654

Query: 569  EYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRN 628
               +F  + N++ G IP S+C AT  QVLD S+N+LSG IP+CLI     TL VLNL RN
Sbjct: 655  --IFFSLSKNNITGSIPRSICNATYLQVLDFSDNHLSGKIPSCLI--EYGTLGVLNLRRN 710

Query: 629  NLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLR 688
            N +G +    FP +C LQ LDLS N ++G +P SLANC  L+VL+L +N ++  FPC L+
Sbjct: 711  NFSGAIPGK-FPVNCLLQTLDLSRNHIEGKIPGSLANCTALEVLNLGNNQMNGTFPCLLK 769

Query: 689  NASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLT---MMVAE 745
            N ++L+VLVLR NNF G I C ++  +W +LQIVDLA N FSG+L      T   MM  E
Sbjct: 770  NITTLRVLVLRGNNFQGSIGCCKSNSTWAMLQIVDLAFNNFSGKLPATCFSTWTAMMAGE 829

Query: 746  TKSGSEVNHLGIEMP--SNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPV 803
             +  S++ HL   +   S  +Y+  VTVT KG+E++L+KV  ++TSID S NNF+G IP 
Sbjct: 830  NEVQSKLKHLQFRVLQFSQLYYQDAVTVTSKGLEMELVKVLTLYTSIDLSCNNFQGDIPE 889

Query: 804  EMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLN 863
             MG F SLY LN+SHN  TG IPSS GNL+++ESLDLS N LSG+IP QLA+LNFLSVLN
Sbjct: 890  VMGNFTSLYVLNLSHNGFTGHIPSSIGNLRQLESLDLSQNRLSGEIPTQLANLNFLSVLN 949

Query: 864  LSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQARPPELPPSPPPASSGEIDW 923
            LS+N LVG+IP   Q+Q+FS TSYEGNK L G PL       PPE        S  EI W
Sbjct: 950  LSFNQLVGRIPPGNQMQTFSETSYEGNKELCGWPLDLSCTDPPPEFDDRHS-GSRMEIKW 1008

Query: 924  FFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYR 963
             +IA  IGF  G G V+ PL+   +  K Y   + + + R
Sbjct: 1009 EYIAPEIGFVTGLGIVIWPLVLCRRWRKCYYKHVDRILSR 1048

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|214011438|gb|ACJ61469.1| GbVe [Gossypium barbadense]

 Score =  849 bits (2194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1015 (48%), Positives = 662/1015 (65%), Gaps = 66/1015 (6%)

Query: 2    KNSLILSNDSGFPST---KLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLE 58
            +  L+L   S F ST   KL +W  +Q++DCC W GV CD +G VIGLDLS + I G ++
Sbjct: 35   QGQLLLELKSSFNSTSLGKLQKW--NQTTDCCFWDGVTCDASGRVIGLDLSNQSISGAID 92

Query: 59   NATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRL 118
            +++GLF  Q+LQ LNL +        P+    L NL+YLNLS  GF G+IP  IS +TRL
Sbjct: 93   DSSGLFRFQHLQQLNLAYNRLMA-TFPTGFDKLENLSYLNLSNAGFTGQIPAVISRMTRL 151

Query: 119  VTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQ 178
            VTLDLS    +  S T+    L + +QNLT+L  LHLD V++ A+G EWC+ALS L +LQ
Sbjct: 152  VTLDLSVSSLLGRSLTLEKPKLEMLVQNLTKLKFLHLDGVNIRATGNEWCRALSSLTDLQ 211

Query: 179  VLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGK 238
            VLS+S C+LSGPI+  ++K RSLSVIRL  N   +S  EF A   NL +L LS  GL+G 
Sbjct: 212  VLSMSNCNLSGPIDSSISKLRSLSVIRLDNNNLSTSVPEFFAEFPNLTSLHLSTSGLRGG 271

Query: 239  FPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLT 298
             P ++L +PTL+ LDLS N+LL+GS   FP N SL+ L LS T   G +PDSIGNL  LT
Sbjct: 272  LPAEVLKIPTLQILDLSNNELLEGSFQEFPSNGSLQTLTLSGTKFGGQVPDSIGNLGQLT 331

Query: 299  RVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGI 358
            R+E++SCNF+GPIP ++  LTQL ++DFSSN F GPIPS   SRNL  L+L++N L+G I
Sbjct: 332  RIELASCNFSGPIPKAVKKLTQLVYLDFSSNSFSGPIPSFSSSRNLTQLNLAYNRLNGTI 391

Query: 359  SSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVL 418
             ST W  L NL  + L +N LSG+IP +LF +P+L+ + LS N+F   L ++   ++ +L
Sbjct: 392  HSTDWSVLSNLVSIDLRNNKLSGTIPPTLFGIPSLQKISLSQNRFNGSLGDLRGKTTLLL 451

Query: 419  FDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFS------------------------ 454
              LDLS N L+G  P+ + FEL+ L  L +SSNKFS                        
Sbjct: 452  DTLDLSSNMLQGQFPMFV-FELQGLKILTISSNKFSGFIQWTDIQKLRNLSNLDLSYNNL 510

Query: 455  ------------------RLKLASSKPRAIP-ILKNQSQLSVLDISDNQISGEVPNWIWE 495
                               LKLAS   +  P  LK Q +L+ LD+S NQ+SGE+PNW+WE
Sbjct: 511  SIDATSTNSALSTFPNITTLKLASCNLKKFPGFLKTQVKLNHLDLSKNQMSGEIPNWVWE 570

Query: 496  VGSGNLKFLNLSHNLVVSLQEPY-SI-SGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNN 553
            +   NL +LNLS N ++  + P+ SI S +  +DLH NQL+G I  +    +Y+DYS NN
Sbjct: 571  I--KNLAYLNLSQNSLMKFEGPFLSITSTLTVVDLHGNQLQGQIDRLPQYATYLDYSRNN 628

Query: 554  FTSI-PADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACL 612
            F+S+ P DIG+F+ +  YF+ ++ NN   G IPES+CK++  QVLDLSNN+LSG+IP CL
Sbjct: 629  FSSVLPRDIGDFL-QFAYFFSISDNN-FHGSIPESICKSSYLQVLDLSNNSLSGSIPECL 686

Query: 613  ITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL 672
            I  S S L VLNL RNNL G +SDT FP +C LQ L L+ N L+G VPKSL +C ML+VL
Sbjct: 687  IQMSVS-LGVLNLRRNNLTGNISDT-FPENCLLQTLVLNRNLLRGKVPKSLVSCKMLEVL 744

Query: 673  DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGR 732
            DL +N I+D FPC L+N SSL+VLVLR N F+G++ C   +  WP+LQIVDL+ N FSGR
Sbjct: 745  DLGNNQINDTFPCHLKNISSLRVLVLRGNKFNGNVHCSE-RSPWPMLQIVDLSSNSFSGR 803

Query: 733  LSQKWLLT---MMVAETKSGSEVNHLGIE-MPSNQF-YEVRVTVTVKGIEIKLLKVPNIF 787
            L +  L T   M  AE+++ SE+NHL  + +  NQF Y+  +TVT+KG+E++LLK+  +F
Sbjct: 804  LHEACLSTWKAMRAAESETLSELNHLQFKVLKLNQFYYQDAITVTMKGLELELLKILTVF 863

Query: 788  TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSG 847
            TSID S NNFEGPIP  +G F++LY LN SHNA TGSIP S GNL ++ESLDLS N+  G
Sbjct: 864  TSIDISRNNFEGPIPEVIGTFKALYVLNFSHNAFTGSIPPSLGNLSQLESLDLSSNSFDG 923

Query: 848  KIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNES-QARP 906
            +IP QLA+LNF+S LN+S N L G+IP STQ+QSFS  S+E NKGL G PLT +      
Sbjct: 924  EIPIQLANLNFISFLNVSNNKLEGQIPRSTQIQSFSEASFENNKGLCGLPLTTDCVNGTS 983

Query: 907  PELPPSPPPASSGEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFI 961
            P+   +     + E DW FI + +GF VG    V+PL+F    +KW ++++ K +
Sbjct: 984  PKPRTTQEFQPADEFDWQFIFIGVGFGVGAALFVAPLIFWKTASKWVDEIVDKIL 1038

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147806063|emb|CAN76702.1| hypothetical protein VITISV_032508 [Vitis vinifera]

 Score =  842 bits (2174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1001 (49%), Positives = 631/1001 (63%), Gaps = 60/1001 (5%)

Query: 15   STKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNL 74
            S+KL  W  + S DCC W GV  D +GHV+ LDLS E I GG  +++ LF LQ+LQ LNL
Sbjct: 18   SSKLVSW--NPSGDCCSWGGVTWDSSGHVVELDLSSELISGGFNSSSSLFSLQHLQRLNL 75

Query: 75   GFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEY-SY 133
                F   QIPS  G L NL YLNLS  GF+G+IP EIS LTRLVT+D S +  +   + 
Sbjct: 76   ANNSFNASQIPSGFGKLGNLIYLNLSSAGFSGQIPIEISRLTRLVTIDFSILYFLGLPTL 135

Query: 134  TVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSF-LPNLQVLSLSGCDLSGPIN 192
             +   NL   LQNL EL ELHL+ V++SA G EWC+ LS  +PNLQVLS+  C LSGP++
Sbjct: 136  KLENPNLRKLLQNLRELRELHLNGVNISAEGKEWCQXLSSSVPNLQVLSMPNCYLSGPLD 195

Query: 193  HYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETL 252
              L K RSLS IRL  N   +   EFLA+  NL  L LS CGL G FPEKI  VPTL+ L
Sbjct: 196  SSLQKLRSLSSIRLDNNXFSAPVPEFLANFLNLTLLRLSSCGLHGTFPEKIFQVPTLQXL 255

Query: 253  DLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIP 312
            DLS B+LLQGSLP FP+N SL  L+LS T  SG +P SIGNL+ LTR+E++ C+F+GPIP
Sbjct: 256  DLSNBKLLQGSLPKFPQNGSLGTLVLSDTKFSGKVPYSIGNLKXLTRIELAGCDFSGPIP 315

Query: 313  PSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIV 372
             SMA+LTQL ++D S+N F G IP    S+NL  ++LS N L+G ISS+ W+ L+NL  +
Sbjct: 316  NSMADLTQLVYLDLSNNKFSGSIPPFSLSKNLTRINLSHNYLTGPISSSHWDGLVNLVTL 375

Query: 373  VLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPV 432
             L  NSL+GS+P  LF LP+L+ +QLSNN+F   L + S V  SVL  LD S N LEGP+
Sbjct: 376  DLRDNSLNGSLPMLLFSLPSLQKIQLSNNKFSGPLSKFSVVPFSVLETLDSSSNNLEGPI 435

Query: 433  PISIFFELRNLYTLDLSSNKF--------------------------------------- 453
            P+S+F +L  L  LDLSSNKF                                       
Sbjct: 436  PVSVF-DLHCLNILDLSSNKFNGTVELSSFQKLGNLSTLSLSYNFLSTNASVGNPTSPLL 494

Query: 454  ---SRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNL 510
               + LKLAS K   +P L  QS+L+ LD+SDNQI G +PNWIW++G+G+L  LNLSHNL
Sbjct: 495  SNLTTLKLASCKLXTLPDLSTQSRLTHLDLSDNQIRGSIPNWIWKIGNGSLMHLNLSHNL 554

Query: 511  VVSLQEPYS--ISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNF-TSIPADIGNFMSE 567
            +  LQE +S     +  LDLHSNQL G IP     + YVDYSNN+F +SIP DIG +MS 
Sbjct: 555  LEDLQETFSNFTPYLSILDLHSNQLHGQIPTPPQFSKYVDYSNNSFNSSIPDDIGTYMSF 614

Query: 568  TEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGR 627
            T   +F    N++ G IP S+C AT  QVLD S+N  SG IP+CLI   +  L VLNLGR
Sbjct: 615  T--IFFSLXKNNITGSIPRSICNATYLQVLDFSDNAFSGEIPSCLIQNEA--LAVLNLGR 670

Query: 628  NNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWL 687
            N   GT+   +    C L+ LDLS N LQG +P+SL NC  L++L+L +N I D FPCWL
Sbjct: 671  NKFVGTIXGELX-HKCLLRTLDLSENLLQGNIPESLVNCKELEILNLGNNQIDDIFPCWL 729

Query: 688  RNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLT---MMVA 744
            +N SSL+VLVLR+N F G I CP++  +W  LQI DLA N FSG+L  K L T   +M  
Sbjct: 730  KNISSLRVLVLRANKFHGTIGCPKSNSTWATLQIFDLAFNNFSGKLPAKCLSTWTAIMAG 789

Query: 745  ETKSGSEVNHLGIEMPS--NQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIP 802
            E +  S++  L   +P     +Y+  V V  KG E++L+K+  +FTSID+S NNFEG IP
Sbjct: 790  ENEVQSKLKILQFRVPQFGQLYYQDTVRVISKGQEMELVKILTLFTSIDWSYNNFEGEIP 849

Query: 803  VEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVL 862
              +G   SLY LN+SHN  TG IPSS G L+++ESLDLS N LSG+IP QLA+LNFLSVL
Sbjct: 850  EVIGNLTSLYVLNLSHNGFTGQIPSSIGKLRQLESLDLSQNRLSGEIPTQLANLNFLSVL 909

Query: 863  NLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQARPPELPPSPPPASSGEID 922
            NLS+N LVG+IP   QLQ+FSP S+ GN+GL G P+    +   P         S  EI 
Sbjct: 910  NLSFNQLVGRIPPGNQLQTFSPNSFVGNRGLCGFPVNVSCEDATPPTSDDGHSGSGMEIK 969

Query: 923  WFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYR 963
            W  IA  IGF  G G V+ PL+   +  K Y   + + + R
Sbjct: 970  WECIAPEIGFVTGLGIVIWPLVLCRRWRKCYYKHVDRILSR 1010

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481296|ref|XP_003632603.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  841 bits (2172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1005 (50%), Positives = 644/1005 (64%), Gaps = 68/1005 (6%)

Query: 15   STKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNL 74
            S+KL  W  + S+DCC W GV  D  GHV+ LDLS + I GG  N++ +F LQYLQSLNL
Sbjct: 59   SSKLVSW--NPSTDCCSWGGVTWDATGHVVALDLSSQSIYGGFNNSSSIFSLQYLQSLNL 116

Query: 75   GFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGI-VPIEYSY 133
                F   QIPS    L +L YLNLS  GF+G+IP EIS LT+LVT+D S   +P   + 
Sbjct: 117  ANNTFYSSQIPSGFSKLDHLIYLNLSNAGFSGQIPIEISCLTKLVTIDFSVFYLPGVPTL 176

Query: 134  TVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSF-LPNLQVLSLSGCDLSGPIN 192
            T+   NL + +QNLTEL EL+L+ V++SA G EWC+ALS  +PNLQVLSL+ C L GP++
Sbjct: 177  TLENPNLRMLVQNLTELRELYLNGVNISAQGKEWCQALSSSVPNLQVLSLASCYLYGPLD 236

Query: 193  HYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETL 252
              L K RSLS IRL  N   +   EFLA+ +NL  L LS CGL G FPEKI  VPTL+ L
Sbjct: 237  SSLQKLRSLSSIRLDSNNFSAPVLEFLANFSNLTQLRLSSCGLYGTFPEKIFQVPTLQIL 296

Query: 253  DLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIP 312
            DLS N+LL GSLP FP+N SL  L+LS T  SG +P SIGNL+ LTR+E++ C+F+G IP
Sbjct: 297  DLSNNKLLLGSLPEFPQNGSLGTLVLSDTKFSGKVPYSIGNLKRLTRIELAGCDFSGAIP 356

Query: 313  PSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIV 372
             SMA+LTQL ++D S N F GPIP    S+NL  ++LS N L+G I S+  + L+NL  +
Sbjct: 357  NSMADLTQLVYLDSSYNKFSGPIPPFSLSKNLTRINLSHNYLTGPIPSSHLDGLVNLVTL 416

Query: 373  VLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPV 432
             L  NSL+GS+P  LF LP+L+ +QLSNNQF   L + S V  SVL  LDLS N LEGP+
Sbjct: 417  DLRDNSLNGSLPMLLFSLPSLQKIQLSNNQFSGPLSKFSVVPFSVLETLDLSSNNLEGPI 476

Query: 433  PISIFFELRNLYTLDLSSNKFS-------------------------------------- 454
            PIS+ F+L+ L  LDLSSNKF+                                      
Sbjct: 477  PISV-FDLQCLNILDLSSNKFNGTVLLSSFQNLGNLTTLSLSYNNLSINSSVGNPTLPLL 535

Query: 455  ----RLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNL 510
                 LKLAS K R +P L  QS+L+ LD+SDNQI G +PNWIW+ G+G+L  LNLSHNL
Sbjct: 536  LNLTTLKLASCKLRTLPDLSTQSRLTHLDLSDNQIPGSIPNWIWKNGNGSLLHLNLSHNL 595

Query: 511  VVSLQEPYS--ISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNF-TSIPADIGNFMSE 567
            +  LQE +S     +  LDLHSNQL G IP     + YVDYS+N+F +SIP DIG ++S 
Sbjct: 596  LEDLQETFSNFTPYLSILDLHSNQLHGQIPTPPQFSIYVDYSDNSFNSSIPDDIGIYISF 655

Query: 568  TEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGR 627
            T   +F  + N++ GVIPES+C A+  QVLD S+N  SG IP+CLI   +  L VLNLGR
Sbjct: 656  T--LFFSLSKNNITGVIPESICNASYLQVLDFSDNAFSGKIPSCLIQNEA--LAVLNLGR 711

Query: 628  NNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWL 687
            N  NGT+    F   C LQ LDL+ N L+G + +SLANC  L++L+L +N I D FPCWL
Sbjct: 712  NKFNGTIPGE-FRHKCLLQTLDLNENLLEGNITESLANCKELEILNLGNNQIDDIFPCWL 770

Query: 688  RNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLT---MMVA 744
            +N ++L+VLVLR N F G I C R+  +W +LQIVDLA N FSG+L +K   T   MM  
Sbjct: 771  KNITNLRVLVLRGNKFHGPIGCLRSNSTWAMLQIVDLADNNFSGKLPEKCFSTWTAMMAG 830

Query: 745  ETKSGSEVNHLGIEMP--SNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIP 802
            E +  S++ HL   +   S  +Y+  VTVT KG+E++L+KV  ++TSID S NNF+G IP
Sbjct: 831  ENEVQSKLKHLQFRVLQFSQLYYQDAVTVTSKGLEMELVKVLTLYTSIDLSCNNFQGDIP 890

Query: 803  VEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVL 862
              MG F SLY LN+SHN  TG IPSS GNL+++ESLDLS N LSG+IP QLA+LNFLSVL
Sbjct: 891  EVMGNFTSLYGLNLSHNGFTGHIPSSIGNLRQLESLDLSQNRLSGEIPTQLANLNFLSVL 950

Query: 863  NLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQARPP----ELPPSPPPASS 918
            NLS+N LVG+IP   Q+Q+FS  SYEGNK L G PL       PP    E        S 
Sbjct: 951  NLSFNQLVGRIPPGNQMQTFSEASYEGNKELCGWPLDLSCTDPPPSQGKEEFDDRHSGSR 1010

Query: 919  GEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYR 963
             EI W +IA  IGF  G G V+ PL+   +  K Y    YK + R
Sbjct: 1011 MEIKWEYIAPEIGFVTGLGIVIWPLVLCRRWRKCY----YKHVDR 1051

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481293|ref|XP_003632602.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  832 bits (2149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1024 (49%), Positives = 649/1024 (63%), Gaps = 84/1024 (8%)

Query: 1    MKNSLILSNDSGFPSTKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENA 60
            +KNSL   ++    S KL  W  ++S  CC W GV  D  GHV+GLDLS E I GG  ++
Sbjct: 100  LKNSLKFKSNV---SMKLVTW--NESVGCCSWEGVTWDSNGHVVGLDLSSELISGGFNSS 154

Query: 61   TGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVT 120
            + LF L++LQ LNL    F   QIPS    L NLTYLNLS  GF G+IP EIS LTRLVT
Sbjct: 155  SSLFSLRHLQRLNLANNSFNSSQIPSGFDKLGNLTYLNLSATGFYGQIPIEISRLTRLVT 214

Query: 121  LDLSGI-VPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSF-LPNLQ 178
            +D S +  P   +  +   NL + +QNL EL EL+L+ V++SA G EWC+ALS  +PNLQ
Sbjct: 215  IDFSILYFPGVPTLKLENPNLRMLVQNLAELRELYLNGVNISAQGKEWCRALSSSVPNLQ 274

Query: 179  VLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGK 238
            VLSL  C LSGP++  L K RSLS IRL  N   +   EFLA+ +NL  L LS CGL G 
Sbjct: 275  VLSLPSCYLSGPLDSSLQKLRSLSSIRLDSNNFSAPVPEFLANFSNLTQLRLSSCGLYGT 334

Query: 239  FPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLT 298
            FPEKI  VPTL+ LDLS N+LL GSLP FP+N SL  L+L  T  SG +P+SIGNL+ LT
Sbjct: 335  FPEKIFQVPTLQILDLSNNKLLLGSLPEFPQNGSLETLVLPDTKFSGKVPNSIGNLKRLT 394

Query: 299  RVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGI 358
            R+E++ CNF+GPIP S ANL +L ++D S N F GPIP    S+NL  ++LS N+L+G I
Sbjct: 395  RIELARCNFSGPIPNSTANLARLVYLDLSENKFSGPIPPFSLSKNLTRINLSHNHLTGPI 454

Query: 359  SSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVL 418
             S+  + L+NL  + L  NSL+GS+P  LF LP+L+ +QLSNNQF   L + S V  SVL
Sbjct: 455  PSSHLDGLVNLVTLDLSKNSLNGSLPMPLFSLPSLQKIQLSNNQFSGPLSKFS-VVPSVL 513

Query: 419  FDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFS------------------------ 454
              LDLS N LEG +P+SI F+L+ L  LDLSSNKF+                        
Sbjct: 514  DTLDLSSNNLEGQIPVSI-FDLQCLSILDLSSNKFNGTVLLSSFQKLGNLTTLSLSYNNL 572

Query: 455  ------------------RLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEV 496
                               LKLAS K R +P L  QS+L+ LD+SDNQI G +PNWI ++
Sbjct: 573  SINSSVGNPTLPLLLNLTTLKLASCKLRTLPDLSTQSRLTYLDLSDNQIPGSIPNWIRKI 632

Query: 497  GSGNLKFLNLSHNLVVSLQEPYS--ISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNF 554
            G+G+L  LNLSHNL+  LQE +S     +  LDLHSNQL G IP      SYVDYS+N F
Sbjct: 633  GNGSLLHLNLSHNLLEDLQETFSNFTPSLSILDLHSNQLHGQIPTPPQFCSYVDYSDNRF 692

Query: 555  T-SIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLI 613
            T SIP  IG ++S T   +F  + N++ G IP S+C AT  QVLD SNNNLSG IP+CLI
Sbjct: 693  TSSIPDGIGVYISFT--IFFSLSKNNITGSIPRSICNATYLQVLDFSNNNLSGKIPSCLI 750

Query: 614  TKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLD 673
                 TL VLNL RNN +G +    FP +C LQ LDLS N ++G +P SLANC  L+VL+
Sbjct: 751  --EYGTLGVLNLRRNNFSGAIPGK-FPVNCLLQTLDLSRNHIEGKIPGSLANCTALEVLN 807

Query: 674  LRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRL 733
            L +N ++  FPC L+N ++L+VLVLR NNF G I C ++  +W +LQIVDLA N FSG+L
Sbjct: 808  LGNNQMNGTFPCLLKNITTLRVLVLRGNNFQGSIGCRKSNSTWAMLQIVDLAFNNFSGKL 867

Query: 734  SQKWLLT---MMVAETKSGSEVNHLGIEMP--SNQFYEVRVTVTVKGIEIKLLKVPNIFT 788
                  T   MM  E +  S++ HL   +   S  +Y+  VTVT KG+E++L+KV  ++T
Sbjct: 868  PATCFSTWTAMMAGENEVQSKLKHLQFRVLQFSQLYYQDAVTVTSKGLEMELVKVLTLYT 927

Query: 789  SIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGK 848
            SID S NNF+G IP  MG F SLY LN+SHN  TG IPSS GNL+++ESLDLS N LSG+
Sbjct: 928  SIDLSCNNFQGDIPEVMGNFTSLYVLNLSHNGFTGHIPSSIGNLRQLESLDLSRNRLSGE 987

Query: 849  IPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQARPPE 908
            IP QLA+LNFLSVLNLS+N LVG+IP   Q+Q+FS TSYEGNK L G PL N +      
Sbjct: 988  IPTQLANLNFLSVLNLSFNQLVGRIPPGNQMQTFSETSYEGNKELCGWPLINCTD----- 1042

Query: 909  LPPSPPPASSG-----------EIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLI 957
                PPP               E DW FI   +GF VG G +V+PL+F  +  KW ++ +
Sbjct: 1043 ----PPPTQDKRFQDKRFQDKEEFDWEFIITGLGFGVGAGIIVAPLIFWKKGRKWLDECV 1098

Query: 958  YKFI 961
             +F+
Sbjct: 1099 DRFV 1102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37956237|gb|AAP20228.1| resistance protein SlVe1 precursor [Solanum lycopersicoides] gi|37956239|gb|AAP20229.1| resistance protein SlVe1 precursor [Solanum lycopersicoides]

 Score =  829 bits (2141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1000 (48%), Positives = 642/1000 (64%), Gaps = 62/1000 (6%)

Query: 15   STKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNL 74
            S KL +W+ H +S+CC+W+GV CD +GHVI L+L  E I  G+ENA+ LF LQYL+SLNL
Sbjct: 55   SNKLERWN-HNTSECCNWNGVTCDLSGHVIALELDDEKISSGIENASALFSLQYLESLNL 113

Query: 75   GFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVP-IEYSY 133
             +  F    IP  +GNLTNL YLNLS  GF G+IP  +S LTRLVTLDLS + P  +   
Sbjct: 114  AYNKFN-VGIPVGIGNLTNLKYLNLSNAGFVGQIPMMLSRLTRLVTLDLSTLFPDFDQPL 172

Query: 134  TVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALS-FLPNLQVLSLSGCDLSGPIN 192
             +   NL  F++N TEL EL+LD VDLSA  T+WC++LS +LPNL VLSL  C +SGPI+
Sbjct: 173  KLENPNLRHFIENSTELRELYLDGVDLSAQRTDWCQSLSSYLPNLTVLSLCACQISGPID 232

Query: 193  HYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETL 252
              L+K + LS+IRL  N   ++   + A+ TNL  L L  C LQG FP+KI  V  LE+L
Sbjct: 233  ESLSKLQILSIIRLERNNLSTTVPGYFANFTNLTTLSLDSCNLQGAFPKKIFQVQVLESL 292

Query: 253  DLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIP 312
            DLS N+LL GS+P+FP+N SLR + LS+T  SG+LP+SI NL+NL+R+ +S  NF GPIP
Sbjct: 293  DLSNNKLLSGSIPSFPRNGSLRRISLSYTNFSGSLPESISNLQNLSRLGLSDFNFNGPIP 352

Query: 313  PSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIV 372
             +MANL  L ++DFS N+F G IP   +S+ L  LDLS N L+G +S   +E L  L  +
Sbjct: 353  STMANLINLGYLDFSRNNFTGSIPHFQRSKKLTYLDLSRNGLTGLLSRAHFEGLSELVYI 412

Query: 373  VLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPV 432
             +G NSL+G++P  +F LP+L+ L L++NQF  Q+ E  N SSS+L  +DL  N L G +
Sbjct: 413  NVGDNSLNGTLPAYIFELPSLQQLFLNSNQFVGQVDEFRNASSSLLDTVDLRNNHLNGSI 472

Query: 433  PISIFFELRNLYTLDLSSNKFSR------------------------------------- 455
            P S  FE+  L  L LSSN FS                                      
Sbjct: 473  PKST-FEIGRLKVLSLSSNFFSGTVTLDLIGRLNNLSRLELSYNNLTVDASSSNSTSFTF 531

Query: 456  -----LKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNL 510
                 LKLAS + +  P L NQS +  LD+SDNQI G +PNWIW +G   L  LNLS N 
Sbjct: 532  PQLSILKLASCRLQKFPDLMNQSMMIHLDLSDNQIRGAIPNWIWGIGDQGLTHLNLSFNQ 591

Query: 511  VVSLQEPYSISG-IRFLDLHSNQLRGN--IPYMSPNTSYVDY-SNNNFTSIPADIGNFMS 566
            +  +++PY+ S  +  LDLH+N+L+G+  IP  SP   YVDY SNN+  SIP DIG  + 
Sbjct: 592  LEYMEQPYTASSNLVVLDLHTNRLKGDLLIPPSSP--IYVDYSSNNSNNSIPLDIGKSLG 649

Query: 567  ETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLG 626
                 +F  ANN + G+IPES+C  +  Q+LD SNN LSGTIP CL+ + S+TL VLNLG
Sbjct: 650  FAS--FFSVANNGITGIIPESICDVSYLQILDFSNNALSGTIPPCLL-EYSTTLGVLNLG 706

Query: 627  RNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCW 686
             N L+G + D+ FP DC L  LDLS N+LQG +PKSL NC +L+VL+  +N + D+FPC 
Sbjct: 707  NNRLHGVIPDS-FPIDCALNTLDLSENKLQGRLPKSLVNCKLLEVLNAGNNRLVDHFPCM 765

Query: 687  LRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWL---LTMMV 743
            LRN++SL+VLVLRSN FSG++ C     SWP LQI+D+A N F+G L+ ++      MMV
Sbjct: 766  LRNSNSLRVLVLRSNQFSGNLQCEVTINSWPNLQIIDIASNNFTGVLNAEFFSNWRGMMV 825

Query: 744  AETKSGSEVNHLGIEM--PSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPI 801
            A+    +  NH+  +    SN +Y+  VT+T+KG+E++L+K+  +FTSIDFSSN F+G I
Sbjct: 826  ADDYVETGRNHIQYKFFELSNMYYQDTVTLTIKGMELELVKILRVFTSIDFSSNRFQGAI 885

Query: 802  PVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSV 861
            P  +G   SLY LN+SHNAL G IP S G L+ +ESLDLS N+LSG+IP++LASL FL+ 
Sbjct: 886  PDTIGNLSSLYVLNLSHNALEGPIPKSIGKLQMLESLDLSRNHLSGEIPSELASLTFLAA 945

Query: 862  LNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQARPPELPPSPPPASSGEI 921
            LNLS+N   GKIP++ Q Q+FS  S+EGN GL G PL +  Q+   E  P     S  + 
Sbjct: 946  LNLSFNKFFGKIPSTNQFQTFSADSFEGNSGLCGLPLNDSCQSNGSESLPPLTSQSDSDD 1005

Query: 922  DWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFI 961
            +W FI  ++G+ VG    +SPL F   V KW++    K++
Sbjct: 1006 EWKFIFAAVGYLVGAANTISPLWFYEPVKKWFDKHAEKWL 1045

Source: Solanum lycopersicoides

Species: Solanum lycopersicoides

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|237899605|gb|ACR33107.1| verticillium wilt disease resistance protein [Solanum lycopersicum]

 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1014 (48%), Positives = 658/1014 (64%), Gaps = 73/1014 (7%)

Query: 15   STKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNL 74
            S KL++W+ H +S+CC+W+GV CD +GHVI L+L  E I  G+ENA+ LF LQYL+ LNL
Sbjct: 53   SNKLARWN-HNTSECCNWNGVTCDLSGHVIALELDDEKISSGIENASALFSLQYLERLNL 111

Query: 75   GFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYT 134
             +  F    IP  +GNLTNLTYLNLS  GF G+IP  +S LTRLVTLDLS + P +++  
Sbjct: 112  AYNKFN-VGIPVGIGNLTNLTYLNLSNAGFVGQIPMMLSRLTRLVTLDLSTLFP-DFAQP 169

Query: 135  VWIAN--LSLFLQNLTELTELHLDRVDLSASGTEWCKALS-FLPNLQVLSLSGCDLSGPI 191
            + + N  LS F++N TEL EL+LD VDLSA  TEWC++LS +LPNL VLSL  C +SGPI
Sbjct: 170  LKLENPNLSHFIENSTELRELYLDGVDLSAQRTEWCQSLSSYLPNLTVLSLRTCRISGPI 229

Query: 192  NHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLET 251
            +  L+K   LS IRL  N   ++  E+ A+ +NL  L LS C LQG FP++I  VP LE 
Sbjct: 230  DESLSKLHFLSFIRLDQNNLSTTVPEYFANFSNLTTLTLSSCNLQGTFPKRIFQVPVLEF 289

Query: 252  LDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPI 311
            LDLS N+LL GS+P FP+  SLR + LS+T  SG+LPD+I NL+NL+R+E+S+CNF+ PI
Sbjct: 290  LDLSTNKLLSGSIPIFPQIGSLRTISLSYTKFSGSLPDTISNLQNLSRLELSNCNFSEPI 349

Query: 312  PPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQI 371
            P +MANLT L ++DFS N+F G +P    ++ L  LDLS N L+G +S   +E L  L  
Sbjct: 350  PSTMANLTNLVYLDFSFNNFTGSLPYFQGAKKLIYLDLSRNGLTGLLSRAHFEGLSELVY 409

Query: 372  VVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGP 431
            + LG+NSL+GS+P  +F LP+L+ L L +NQF  Q+ E  N SSS L  +DL  N L G 
Sbjct: 410  INLGNNSLNGSLPAYIFELPSLKQLFLYSNQFVGQVDEFRNASSSPLDTVDLRNNHLNGS 469

Query: 432  VPISIFFELRNLYTLDLSSNKF---------------SR--------------------- 455
            +P S+ FE+  L  L LSSN F               SR                     
Sbjct: 470  IPKSM-FEVGRLKVLSLSSNFFRGTVPLDLIGRLSNLSRLELSYNNLTVDASSSNSTSFT 528

Query: 456  ------LKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN 509
                  LKLAS + +  P LKNQS++  LD+SDNQI G +PNWIW +G G L  LNLS N
Sbjct: 529  FPQLNILKLASCRLQKFPDLKNQSRMMHLDLSDNQILGAIPNWIWGIGGGGLAHLNLSFN 588

Query: 510  LVVSLQEPYSISG-IRFLDLHSNQLRGNIPYMSPNTS-YVDYSNNNF-TSIPADIGNFMS 566
             +  +++PY++S  +  LDLHSN+L+G++  + P+T+ YVDYS+NN   SIP DIG  + 
Sbjct: 589  QLEYVEQPYTVSSNLVVLDLHSNRLKGDL-LIPPSTAIYVDYSSNNLNNSIPTDIGRSLG 647

Query: 567  ETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLG 626
                 +F  ANNS+ G+IPES+C  +  QVLD SNN LSGTIP CL+ + S  L VLNLG
Sbjct: 648  FAS--FFSVANNSITGIIPESICNVSYLQVLDFSNNALSGTIPPCLL-EYSPKLGVLNLG 704

Query: 627  RNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCW 686
             N L+G + D+ FP  C L  LDLS N  +G +PKSL NC +L+VL++ +N + D FPC 
Sbjct: 705  NNRLHGVIPDS-FPIGCALITLDLSRNIFEGKLPKSLVNCTLLEVLNVGNNSLVDRFPCM 763

Query: 687  LRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLT---MMV 743
            LRN++SL+VLVLRSN F+G+++C   K SW  LQI+D+A N F+G L+ +       MMV
Sbjct: 764  LRNSTSLKVLVLRSNKFNGNLTCNITKHSWKNLQIIDIASNNFTGMLNAECFTNWRGMMV 823

Query: 744  AETKSGSEVNHLGIEM--PSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPI 801
            A+    +  NH+  E    SN +Y+  VT+ +KG+E++L+K+  +FTSIDFSSN F+G I
Sbjct: 824  AKDYVETGRNHIQYEFLQLSNLYYQDTVTLIIKGMELELVKILRVFTSIDFSSNRFQGKI 883

Query: 802  PVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSV 861
            P  +G   SLY LN+SHNAL G IP S G L+ +ESLDLS N+LSG+IP++L+SL FL+V
Sbjct: 884  PDTVGDLSSLYVLNLSHNALEGPIPKSIGKLQMLESLDLSRNHLSGEIPSELSSLTFLAV 943

Query: 862  LNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQARPPELPPSPPPASSGEI 921
            LNLS+NNL GKIP S Q ++FS  S+EGN+GL G PL    ++   EL P+ P +     
Sbjct: 944  LNLSFNNLFGKIPQSNQFETFSAESFEGNRGLCGLPLNVICKSDTSELKPA-PSSQDDSY 1002

Query: 922  DWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLI----------YKFIYRRF 965
            DW FI   +G+ VG    ++PL+F  Q NK+++  +          Y F Y RF
Sbjct: 1003 DWQFIFTGVGYGVGAAISIAPLLFYKQGNKYFDKHLERMLKLMFPRYWFSYTRF 1056

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	967
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.829	0.806	0.318	7.5e-89
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.770	0.851	0.321	4.9e-85
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.813	0.880	0.307	1.2e-81
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.827	0.848	0.300	1.4e-80
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.849	0.835	0.295	2.2e-80
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.829	0.838	0.286	2.9e-80
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.837	0.794	0.301	7.6e-80
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.710	0.791	0.320	5.5e-77
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.758	0.865	0.295	3.5e-75
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.796	0.864	0.306	1.5e-74

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 283/888 (31%), Positives = 431/888 (48%)

Query:   108 IPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEW 167
             IP E S   RL  L+LS       S++    ++S+ L  LT L  L     DLS+S    
Sbjct:   140 IPAEFSKFMRLERLNLS-----RSSFS---GHISIKLLQLTNLVSL-----DLSSS---- 182

Query:   168 CKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYN-YGLSSGT--EFLAHLTN 224
                  + P+    SLS   +  P+  +L     +++  L  +   +SS    EF +++ +
Sbjct:   183 ---FPYSPS----SLS---IEKPLFLHLLALNFMNLRELDMSSVDISSAIPIEF-SYMWS 231

Query:   225 LKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS 284
             L++L L  C L G+FP  +L +P LE++ L  N  L+GSLPNF +N+SL  L + +T  S
Sbjct:   232 LRSLTLKGCNLLGRFPNSVLLIPNLESISLDHNLNLEGSLPNFLRNNSLLKLSIYNTSFS 291

Query:   285 GTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKXXXX 344
             GT+P+SI NL++LT +++    F+G IP S+ +L+ L ++  S N+F G IPS       
Sbjct:   292 GTIPNSISNLKHLTSLKLQQSAFSGRIPSSLRSLSHLSNLVLSENNFVGEIPS---SVSN 348

Query:   345 XXXXXXXXXXXGGISSTFWEQLLNL-QI--VVLGHNSLSGSIPRSLFLLPNLEMLQLSNN 401
                          ++  F   LLNL Q+  + +  N  +G +P ++  L NLE     +N
Sbjct:   349 LKQLTLFDVSDNNLNGNFPSSLLNLNQLRYIDICSNHFTGFLPPTISQLSNLEFFSACDN 408

Query:   402 QFENQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIFFELRNLYTLDLSSNKFSR----LK 457
              F   +P                 N+L     I     L NL  L L +N F      L 
Sbjct:   409 SFTGSIPSSLFNISSLTTLGLSY-NQLNDTTNIKNISLLHNLQRLLLDNNNFKASQVDLD 467

Query:   458 LASSKPRAIPILKNQSQLSVLDI-SDNQ---------ISG----EVPNWIWEVGSGNLKF 503
             +  S  R + +  +   LS  +I SD++         +SG    E P +I      NL  
Sbjct:   468 VFLSLKRLVSLALSGIPLSTTNITSDSEFSSHLEYLELSGCNIIEFPEFIRN--QRNLSS 525

Query:   504 LNLSHNLVVSLQEP---YSISGIRFLDLHSNQL---RGNIPYMSPNTSYV-DYSNNNFTS 556
             ++LS+N +   Q P   + +  +  +DL +N L    G++  +S +   + D S+N F  
Sbjct:   526 IDLSNNNIKG-QVPNWLWRLPELSTVDLSNNSLIGFNGSLKALSGSKIVMLDLSSNAFQG 584

Query:   557 IPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKS 616
              P     FM      YF+ + N+  G IP S+C   N  +LDLSNNNL G IP CL  + 
Sbjct:   585 -PL----FMPPRGIQYFLGSYNNFTGYIPPSICGLANPLILDLSNNNLHGLIPRCLEAQM 639

Query:   617 SSTLEVXXXXXXXXXXXXSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRS 676
             SS L V             + IF     L  LD+S N L+G +P SLA C+ L++L++ S
Sbjct:   640 SS-LSVLNLRNNSLDGSLPN-IFMNAKVLSSLDVSHNTLEGKLPASLAGCSALEILNVES 697

Query:   677 NYISDNFPCWLRNASSLQVLVLRSNNFSGHI-SCPRNKVSWPLLQIVDLACNKFSGRLSQ 735
             N I+D FP WL +   LQVLVLRSNNF G + +       +PLL+I D++ N F G L  
Sbjct:   698 NNINDTFPFWLNSLPKLQVLVLRSNNFRGTLHNVDGVWFGFPLLRITDVSHNDFVGTLPS 757

Query:   736 KWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSN 795
              + +    A +KS +E+ ++G   P +  Y   + +  KG+ +++ ++   +T IDF+ N
Sbjct:   758 DYFMNW-TAISKSETELQYIGD--PEDYGYYTSLVLMNKGVSMEMQRILTKYTVIDFAGN 814

Query:   796 NFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQXXX 855
               +G IP  +G  + L+ LN+S NA TG IPSS  NL  +ESLD+S N + G+IP +   
Sbjct:   815 KIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEIPPELGT 874

Query:   856 XXXXXXXXXXXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTN---ESQA-RXXXXXX 911
                           VG IP  TQ    + +SYEGN G+YG  L +   +  A R      
Sbjct:   875 LSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGSSLKDVCGDIHAPRPPQAVL 934

Query:   912 XXXXXXXGEIDWF--FIAMSIGFAVG--FGAVVSPLMFSVQVNKWYND 955
                     E D    +IA  +GFA G  FG  +  +M S + ++W+ D
Sbjct:   935 PHSSSSSSEEDELISWIAACLGFAPGMVFGLTMGYIMTSHK-HEWFMD 981

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 254/791 (32%), Positives = 375/791 (47%)

Query:   206 LHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLP 265
             LH  +  +S    L +   L  LDLS   L G+    I ++  L TLDLS N    G +P
Sbjct:    94 LHGWFHSNSNLSMLQNFHFLTTLDLSYNHLSGQISSSIGNLSHLTTLDLSGNNF-SGWIP 152

Query:   266 NFPKNS-SLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHM 324
             +   N   L  L L      G +P S+GNL  LT +++S+ NF G IP S  +L QL  +
Sbjct:   153 SSLGNLFHLTSLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSIL 212

Query:   325 DFSSNHFFGPIP-SLHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSI 383
                +N   G +P  +                 G +       L  L+      N+  G+I
Sbjct:   213 RLDNNKLSGNLPLEVINLTKLSEISLSHNQFTGTLPPNI-TSLSILESFSASGNNFVGTI 271

Query:   384 PRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIFFELRNL 443
             P SLF +P++ ++ L NNQ    L                 GN L GP+P SI   L NL
Sbjct:   272 PSSLFTIPSITLIFLDNNQLSGTLEFGNISSPSNLLVLQLGGNNLRGPIPTSIS-RLVNL 330

Query:   444 YTLDLSS---------NKFSRLKLA-------SSKPRAIP---ILKNQSQLSVLDISDNQ 484
              TLDLS          N FS LKL        S+    I    +L     L  LD+S N 
Sbjct:   331 RTLDLSHFNIQGQVDFNIFSHLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNH 390

Query:   485 ISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISG-IRFLDLHSNQLRGNIP-YMSP 542
             +     + + +   G +  LNLS   +    +       +R LD+ +N+++G +P ++  
Sbjct:   391 VLVTNKSSVSDPPLGLIGSLNLSGCGITEFPDILRTQRQMRTLDISNNKIKGQVPSWLLL 450

Query:   543 NTSYVDYSNNNFTSIPADIG---NFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDL 599
                Y+  SNNNF             + +    +F  +NN+ +G IP  +C   +  +LDL
Sbjct:   451 QLEYMHISNNNFIGFERSTKLEKTVVPKPSMKHFFGSNNNFSGKIPSFICSLRSLIILDL 510

Query:   600 SNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDTIFPGDCGLQILDLSGNQLQGVV 659
             SNNN SG IP C + K  STL                TI      L+ LD+S N+L+G +
Sbjct:   511 SNNNFSGAIPPC-VGKFKSTLSDLNLRRNRLSGSLPKTIIKS---LRSLDVSHNELEGKL 566

Query:   660 PKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLL 719
             P+SL + + L+VL++ SN I+D FP WL +   LQVLVLRSN F G I    +K  +P L
Sbjct:   567 PRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNAFHGRI----HKTRFPKL 622

Query:   720 QIVDLACNKFSGRLSQKWLL--TMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIE 777
             +I+D++ N F+G L     +  T M +  K+    N     M S  +++  V +  KG+E
Sbjct:   623 RIIDISRNHFNGTLPSDCFVEWTGMHSLEKNEDRFNEK--YMGSGYYHDSMVLMN-KGLE 679

Query:   778 IKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIES 837
             ++L+++  I+T++DFS N FEG IP  +G  + L+ LN+S N  TG IPSS GNL+E+ES
Sbjct:   680 MELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELES 739

Query:   838 LDLSMNNLSGKIPAQXXXXXXXXXXXXXXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPP 897
             LD+S N LSG+IP +                 VG++P  TQ ++ S +S+E N GL G P
Sbjct:   740 LDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRP 799

Query:   898 LTNESQARXXXXXXXXXXXXXGEIDWFFIAMSIGFAVGF--GAVVSPLMFSVQVNKWYND 955
             L  E +                E    +IA +IGF  G   G  +  ++ S +  +W+  
Sbjct:   800 L-EECRVVHEPTPSGESETLESEQVLSWIAAAIGFTPGIVLGLTIGHIVLSSKP-RWFFK 857

Query:   956 LIYKFIYRRFR 966
             ++Y    RR R
Sbjct:   858 VLYINNSRRRR 868

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 260/846 (30%), Positives = 387/846 (45%)

Query:   144 LQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSV 203
             ++NL  LT L     D     T   + LS L +L    LS    SG I + +     L+ 
Sbjct:    54 IRNLHFLTTLDRSHNDFEGQITSSIENLSHLTSLD---LSYNRFSGQILNSIGNLSRLTS 110

Query:   204 IRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGS 263
             + L +N         + +L++L  L LS     G+ P  I ++  L  L LS N+   G 
Sbjct:   111 LDLSFNQFSGQIPSSIGNLSHLTFLGLSGNRFFGQIPSSIGNLSHLTFLGLSGNRFF-GQ 169

Query:   264 LPNFPKN-SSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLF 322
              P+     S+L +L LS+   SG +P SIGNL  L  + +S  NF G IP S  NL QL 
Sbjct:   170 FPSSIGGLSNLTNLHLSYNKYSGQIPSSIGNLSQLIVLYLSVNNFYGEIPSSFGNLNQLT 229

Query:   323 HMDFSSNHFFGPIPSLHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGS 382
              +D S N   G  P++                  G        L NL       N+ +G+
Sbjct:   230 RLDVSFNKLGGNFPNVLLNLTGLSVVSLSNNKFTGTLPPNITSLSNLMAFYASDNAFTGT 289

Query:   383 IPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXXXXXG-NRLEGPVPISIFFELR 441
              P  LF++P+L  L LS NQ +  L E               G N   GP+P SI  +L 
Sbjct:   290 FPSFLFIIPSLTYLGLSGNQLKGTL-EFGNISSPSNLQYLNIGSNNFIGPIPSSIS-KLI 347

Query:   442 NLYTLDLSS-NK---------FSRLK---------LASSKPRAIPILKNQSQLSVLDISD 482
             NL  L +S  N          FS LK         L ++      IL     L  LD+S 
Sbjct:   348 NLQELGISHLNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDLSG 407

Query:   483 NQISGEVPNWIW-EVGSGNLKFLNLSHNLVVSLQEPYSISG-IRFLDLHSNQLRGNIP-- 538
             N +S    + +  +  S +++ L LS   +    E       + FLD+ +N+++G +P  
Sbjct:   408 NLVSATNKSSVSSDPPSQSIQSLYLSGCGITDFPEILRTQHELGFLDVSNNKIKGQVPGW 467

Query:   539 -YMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVL 597
              +  PN  Y++ SNN F            E    Y + +NN+  G IP  +C+  +   L
Sbjct:   468 LWTLPNLFYLNLSNNTFIGFQRPT---KPEPSMAYLLGSNNNFTGKIPSFICELRSLYTL 524

Query:   598 DLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDTIFPGDCGLQILDLSGNQLQG 657
             DLS+NN SG+IP C+    S+  E+             + IF     L+ LD+  NQL G
Sbjct:   525 DLSDNNFSGSIPRCMENLKSNLSELNLRQNNLSGGF-PEHIFES---LRSLDVGHNQLVG 580

Query:   658 VVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWP 717
              +P+SL   + L+VL++ SN I+D FP WL +   LQVLVLRSN F G    P N+  +P
Sbjct:   581 KLPRSLRFFSNLEVLNVESNRINDMFPFWLSSLQKLQVLVLRSNAFHG----PINQALFP 636

Query:   718 LLQIVDLACNKFSGRLSQK----WLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTV 773
              L+I+D++ N F+G L  +    W     +   + GS VN+LG     + +Y+  + +  
Sbjct:   637 KLRIIDISHNHFNGSLPTEYFVEWSRMSSLGTYEDGSNVNYLG-----SGYYQDSMVLMN 691

Query:   774 KGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLK 833
             KG+E +L+++  I+T++DFS N FEG IP  +G  + L+ LN+S+NA TG IPSS GNL 
Sbjct:   692 KGVESELVRILTIYTAVDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFTGHIPSSIGNLT 751

Query:   834 EIESLDLSMNNLSGKIPAQXXXXXXXXXXXXXXXXXVGKIPTSTQLQSFSPTSYEGNKGL 893
              +ESLD+S N L G+IP +                  G +P   Q  +   +S+EGN GL
Sbjct:   752 ALESLDVSQNKLYGEIPQEIGNLSLLSYMNFSHNQLTGLVPGGQQFLTQRCSSFEGNLGL 811

Query:   894 YGPPLTNESQARXXXXXXXXXXXXXGE------IDWFFIAMSIGFAVGFGAVVSPLMFSV 947
             +G  L    +                E      I W   A+  G  + FG +   ++ S 
Sbjct:   812 FGSSLEEVCRDIHTPASHQQFETPQTEEEDEDLISWIAAAIGFGPGIAFGLMFGYILVSY 871

Query:   948 QVNKWY 953
             +  +W+
Sbjct:   872 KP-EWF 876

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 259/862 (30%), Positives = 400/862 (46%)

Query:   118 LVTLDLSGIVPIEYSYTVWIANLSLF-LQNLTELTELHLDRVDLSASGTEWCKALSFLPN 176
             ++ LDLS      + Y  + +N SLF LQNL  L    L + DL     E   ++  L +
Sbjct:   101 VIELDLS----CSWLYGSFHSNSSLFRLQNLRVLD---LTQNDLDG---EIPSSIGNLSH 150

Query:   177 LQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQ 236
             L  L LS     G I   +     L+ + L  N         + +L++L +L+LS     
Sbjct:   151 LTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSGQIPSSIGNLSHLTSLELSSNQFS 210

Query:   237 GKFPEKILHVPTLETLDLSINQLLQGSLPNFPKN-SSLRDLILSHTGLSGTLPDSIGNLE 295
             G+ P  I ++  L  L L  N    G +P+   N + L  L LS+    G +P S GNL 
Sbjct:   211 GQIPSSIGNLSNLTFLSLPSNDFF-GQIPSSIGNLARLTYLYLSYNNFVGEIPSSFGNLN 269

Query:   296 NLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKXXXXXXXXXXXXXXX 355
              L  ++V S   +G +P S+ NLT+L  +  S N F G IP+                  
Sbjct:   270 QLIVLQVDSNKLSGNVPISLLNLTRLSALLLSHNQFTGTIPN---NISLLSNLMDFEASN 326

Query:   356 GGISSTFWEQLLNLQIVV---LGHNSLSGSIPRSLFLLP-NLEMLQLSNNQFENQLPEIX 411
                + T    L N+  ++   L  N L+G++       P NL+ L + +N F   +P   
Sbjct:   327 NAFTGTLPSSLFNIPPLIRLDLSDNQLNGTLHFGNISSPSNLQYLIIGSNNFIGTIPRSL 386

Query:   412 XXXXXXXXXXXXXGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKN 471
                           N    PV  SIF  L++L  L LS    + + L       +P  K 
Sbjct:   387 SRFVNLTLFDLSHLNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLND----ILPYFKT 442

Query:   472 QSQLSVLDISDNQISGEVPNWIW-EVGSGNLKFLNLSHNLVVSLQEPYSISG-IRFLDLH 529
                L  LDIS N +S    + +  +  S +++ L LS   +    E       + FLD+ 
Sbjct:   443 ---LRSLDISGNLVSATNKSSVSSDPPSQSIQSLYLSGCGITDFPEILRTQHELGFLDVS 499

Query:   530 SNQLRGNIP---YMSPNTSYVDYSNNNFTSIPADI---G-NFMSETEYFYFVAANNSLAG 582
             +N+++G +P   +  PN  Y++ SNN F S  +     G + + +    +  A+NN+  G
Sbjct:   500 NNKIKGQVPGWLWTLPNLFYLNLSNNTFISFESSSKKHGLSSVRKPSMIHLFASNNNFTG 559

Query:   583 VIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDTIFPGD 642
              IP  +C   +   LDLS NN +G+IP C+  K  STL V               IF   
Sbjct:   560 KIPSFICGLRSLNTLDLSENNYNGSIPRCM-EKLKSTLFVLNLRQNNLSGGLPKHIFES- 617

Query:   643 CGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNN 702
               L+ LD+  N L G +P+SL   + L+VL++ SN I+D FP WL + S LQVLVLRSN 
Sbjct:   618 --LRSLDVGHNLLVGKLPRSLIRFSNLEVLNVESNRINDTFPFWLSSLSKLQVLVLRSNA 675

Query:   703 FSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQ----KWLLTMMVAETKSGSEVNHLGIE 758
             F G    P ++ ++P L+I+D++ N F+G L      KW     + + +  S   ++G  
Sbjct:   676 FHG----PIHEATFPELRIIDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMG-- 729

Query:   759 MPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSH 818
               S  +Y+  + +  KG+ ++L+++  I+T++DFS N FEG IP  +G  + L  LN+S+
Sbjct:   730 --SGLYYQDSMVLMNKGLAMELVRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSN 787

Query:   819 NALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQXXXXXXXXXXXXXXXXXVGKIPTSTQ 878
             NA  G IPSS GNL  +ESLD+S N L+G+IP +                  G +P  TQ
Sbjct:   788 NAFGGHIPSSMGNLTALESLDVSQNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGTQ 847

Query:   879 LQSFSPTSYEGNKGLYGPPLTN-----ESQARXXXXXXXXXXXXXGEIDWFFIAMSIGFA 933
              +  + +++E N GL+GP L        + A               EI W  IA +IGF 
Sbjct:   848 FRRQNCSAFENNLGLFGPSLDEVCRDKHTPASQQNETTETEEEDEEEISW--IAAAIGFI 905

Query:   934 VG--FGAVVSPLMFSVQVNKWY 953
              G  FG  +  ++ S +  +W+
Sbjct:   906 PGIVFGLTIGYILVSYKP-EWF 926

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
 Identities = 261/884 (29%), Positives = 412/884 (46%)

Query:   100 SQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVD 159
             S   F G+IP+ + +L+ L TLDLS      +S       +   + NL+ L  + +D   
Sbjct:   120 SNNDFIGQIPSSLETLSNLTTLDLSRN---HFS-----GRIPSSIGNLSHL--IFVDFSH 169

Query:   160 LSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYN--YG-LSSGT 216
              + SG +   +L +L +L   +LS  + SG +   +     L+ +RL  N  +G L S  
Sbjct:   170 NNFSG-QIPSSLGYLSHLTSFNLSYNNFSGRVPSSIGNLSYLTTLRLSRNSFFGELPSSL 228

Query:   217 EFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKN-SSLRD 275
               L HLT+L  LD +     GK P  + ++  L ++DL  N  + G +P    N S L  
Sbjct:   229 GSLFHLTDL-ILDTNH--FVGKIPSSLGNLSHLTSIDLHKNNFV-GEIPFSLGNLSCLTS 284

Query:   276 LILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPI 335
              ILS   + G +P S GNL  L  + V S   +G  P ++ NL +L  +   +N   G +
Sbjct:   285 FILSDNNIVGEIPSSFGNLNQLDILNVKSNKLSGSFPIALLNLRKLSTLSLFNNRLTGTL 344

Query:   336 PS-LHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIP-RSLFLLPNL 393
             PS +                 G + S+ +  + +L+ + L +N L+GS+   ++    NL
Sbjct:   345 PSNMSSLSNLKLFDATENHFTGPLPSSLFN-IPSLKTITLENNQLNGSLGFGNISSYSNL 403

Query:   394 EMLQLSNNQFENQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIFFELRNLYTLDLSS-NK 452
              +L+L NN F   +                  N  +G V  +IF  L+++  L+LS  N 
Sbjct:   404 TVLRLGNNNFRGPIHRSISKLVNLKELDLSNYNT-QGLVDFTIFSHLKSIEYLNLSHLNT 462

Query:   453 FSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVV 512
              + + +         IL +   L  LD+S + +S    + +       +  L LS   + 
Sbjct:   463 TTTIDMYE-------ILSSFKLLDTLDLSGSHVSTTNKSSLSNSSLVLISQLYLSGCGIT 515

Query:   513 SLQEPYSISGIRF-LDLHSNQLRGNIP---YMSPNTSYVDYSNNNFT----SIPADIGNF 564
                +      +   LD+ +N+++G +P   +M P  +YV+ SNN F     S    + + 
Sbjct:   516 EFPKFLRSQELMLTLDISNNKIKGQVPGWLWMLPVLNYVNLSNNTFIGFERSTKLGLTSI 575

Query:   565 MSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXX 624
                        +NN+  G IP  +C+      LD SNN  +G+IP C+    S  L+   
Sbjct:   576 QEPPAMRQLFCSNNNFTGNIPSFICELPYLSTLDFSNNKFNGSIPTCMGNIQSPYLQALN 635

Query:   625 XXXXXXXXXXSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFP 684
                        + IF     L  LD+  NQL G +P+SL++ + L +L++ SN ISD FP
Sbjct:   636 LRHNRLSGLLPENIFES---LISLDVGHNQLVGKLPRSLSHISSLGLLNVESNKISDTFP 692

Query:   685 CWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLL--TMM 742
              WL +   LQVLVLRSN F G    P  K  +  L+I+D++ N+F+G L   + +  T M
Sbjct:   693 LWLSSLQELQVLVLRSNAFYG----PIEKTQFSKLRIIDISGNQFNGTLPANFFVNWTAM 748

Query:   743 VA----ETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFE 798
              +    E +S  E     + M ++ FY   + +  KG+E++L +V  +FT IDFS N FE
Sbjct:   749 FSLDENEDQSNGETMS-NMYMSTDYFYFDSMVLMNKGVEMELERVLKVFTVIDFSGNKFE 807

Query:   799 GPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQXXXXXX 858
             G IP  +G  + L+ LN+S+NAL+G I SS GNL  +ESLD+S N LSG+IP +      
Sbjct:   808 GEIPKSIGLLKELHVLNLSNNALSGHIASSMGNLMALESLDVSQNKLSGEIPQELGKLTY 867

Query:   859 XXXXXXXXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTN--ESQARXXXXXXXXXXX 916
                        VG +P  TQ Q+   +S+E N GLYGP L    +   +           
Sbjct:   868 LAYMNFSHNQLVGLLPGGTQFQTQKCSSFEDNHGLYGPSLEKICDIHGKTPQQSDMAPEP 927

Query:   917 XXGE---IDWFFIAMSIGFAVG--FGAVVSPLMFSVQVNKWYND 955
                E   I W  IA  IGF +G   G     ++FS + + W+ +
Sbjct:   928 EEDEEEVISW--IAAVIGFILGTALGLTFGCILFSYKPD-WFKN 968

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 244/851 (28%), Positives = 387/851 (45%)

Query:   122 DLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLS 181
             +L  +  ++ S+  +   ++  ++NL+ LT  +LD      SG +   ++  L  L  L+
Sbjct:   119 NLHFLTTLDLSFNDFKGQITSSIENLSHLT--YLDLSSNHFSG-QILNSIGNLSRLTYLN 175

Query:   182 LSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPE 241
             L     SG     +     L+ + L YN         +  L++L  L L      G+ P 
Sbjct:   176 LFDNQFSGQAPSSICNLSHLTFLDLSYNRFFGQFPSSIGGLSHLTTLSLFSNKFSGQIPS 235

Query:   242 KILHVPTLETLDLSINQLLQGSLPNFPKN-SSLRDLILSHTGLSGTLPDSIGNLENLTRV 300
              I ++  L TLDLS N    G +P+F  N S L  L L      G +P S GNL  LTR+
Sbjct:   236 SIGNLSNLTTLDLSNNNF-SGQIPSFIGNLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRL 294

Query:   301 EVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKXXXXXXXXXXXXXXXGGISS 360
              V     +G  P  + NLT L  +  S+N F G +P                    G   
Sbjct:   295 YVDDNKLSGNFPNVLLNLTGLSLLSLSNNKFTGTLPPNITSLSNLMDFDASDNAFTGTFP 354

Query:   361 TFWEQLLNLQIVVLGHNSLSGSIPRSLFLLP-NLEMLQLSNNQFENQLPEIXXXXXXXXX 419
             +F   + +L  + L  N L G++       P NL  L + NN F   +P           
Sbjct:   355 SFLFTIPSLTYIRLNGNQLKGTLEFGNISSPSNLYELDIGNNNFIGPIPSSISKLVKLFR 414

Query:   420 XXXXXGNRLEGPVPISIFFELRNLYTLDLSS-NKFSRLKLASSKPRAIPILKNQSQLSVL 478
                   N  +GPV  SIF  L++L  L++S  N  +R+ L          L    +L +L
Sbjct:   415 LDISHLNT-QGPVDFSIFSHLKSLLDLNISHLNTTTRIDLNY-------FLSYFKRLLLL 466

Query:   479 DISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISG-IRFLDLHSNQLRGNI 537
             D+S N +S    + + +  S  ++ L LS   +    E       + FLD+ +N+++G +
Sbjct:   467 DLSGNHVSATNKSSVSDPPSQLIQSLYLSGCGITEFPEFVRTQHELGFLDISNNKIKGQV 526

Query:   538 P---YMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNF 594
             P   +  P   YV+ SNN              E    Y + +NN+  G IP  +C   + 
Sbjct:   527 PDWLWRLPILYYVNLSNNTLIGFQRPS---KPEPSLLYLLGSNNNFIGKIPSFICGLRSL 583

Query:   595 QVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDTIFPGDCGLQILDLSGNQ 654
               LDLS+NN +G+IP C+     STL V               IF     L+ LD+  NQ
Sbjct:   584 NTLDLSDNNFNGSIPRCM-GHLKSTLSVLNLRQNHLSGGLPKQIFEI---LRSLDVGHNQ 639

Query:   655 LQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKV 714
             L G +P+SL+  + L+VL++ SN I+D FP WL +   LQVLVLRSN F G    P ++ 
Sbjct:   640 LVGKLPRSLSFFSTLEVLNVESNRINDTFPFWLSSLPKLQVLVLRSNAFHG----PIHEA 695

Query:   715 SWPLLQIVDLACNKFSGRLSQ----KWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVT 770
             ++P L+I+D++ N+F+G L      KW     + + +  S   ++G    S  +Y+  + 
Sbjct:   696 TFPELRIIDISHNRFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMG----SGLYYQDSMV 751

Query:   771 VTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFG 830
             +  KG+ ++L+++  I+T++DFS N FEG IP  +G  + L  L++S+NA +G +PSS G
Sbjct:   752 LMNKGVAMELVRILTIYTAVDFSGNRFEGEIPKSIGLLKELLVLSLSNNAFSGHMPSSMG 811

Query:   831 NLKEIESLDLSMNNLSGKIPAQXXXXXXXXXXXXXXXXXVGKIPTSTQLQSFSPTSYEGN 890
             NL  +ESLD+S N L+G+IP +                  G +P   Q  + + +++E N
Sbjct:   812 NLTALESLDVSKNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGQQFLTQNCSAFEDN 871

Query:   891 KGLYGPPLTNESQARXXXXXXXXXXXXXGE--------IDWFFIAMSIGFAVGFGAVVSP 942
              GL+G  L  E   R              E        I W   A+  G  + FG +   
Sbjct:   872 LGLFGSSL--EEVCRDIHTPASHQQFETPETEEEDEDLISWIAAAIGFGPGIAFGLMFGY 929

Query:   943 LMFSVQVNKWY 953
             ++ S +  +W+
Sbjct:   930 ILVSYKP-EWF 939

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 266/882 (30%), Positives = 407/882 (46%)

Query:   108 IPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEW 167
             IP E   LT L  LDLS     + S +     + + L  LT+L  L L   D     +  
Sbjct:   159 IPAEFDKLTGLERLDLS-----QSSLS---GQIPINLLQLTKLVSLDLSSSDFFGDESFH 210

Query:   168 CKAL--SFLP-------NLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEF 218
               ++  SFLP       NL+ L +S   +S  I    +  RSL  + L+   G +   EF
Sbjct:   211 YLSIDKSFLPLLARNLRNLRELDMSYVKISSEIPEEFSNIRSLRSLNLN---GCNLFGEF 267

Query:   219 ---LAHLTNLKALDL-SECGLQGKFPEKILHVPTLETLDLSINQL-LQGSLPNFPKN-SS 272
                +  + NL+++DL +   L+G  P  + H      L L+I      G++P+   +  +
Sbjct:   268 PSSILLIPNLQSIDLGNNPNLRGNLP--VFHENN-SLLKLTILYTSFSGAIPDSISSLKN 324

Query:   273 LRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFF 332
             L  L LS +  SG +P S+GNL +L+ + +SS N  G IP S+ NL QL +     N   
Sbjct:   325 LTSLTLSVSYFSGKIPFSLGNLSHLSHLSLSSNNLIGEIPSSIGNLNQLTNFYVGGNKLS 384

Query:   333 GPIPS-LHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLP 391
             G +P+ L                 G +  +   QL  L+      N   G+I   L  +P
Sbjct:   385 GNLPATLSNLTKLNTISLSSNQFTGSLPPSI-SQLSKLKFFFADDNPFIGAILSPLLKIP 443

Query:   392 NLEMLQLSNNQFENQ--LPEIXXXXXXXXXXXXXXGNRLEGPVPISIFFELRNLYTLDLS 449
             +L  + LS NQ  +   +  I                    P+ +++F  L+ L TL +S
Sbjct:   444 SLTRIHLSYNQLNDLVGIENIFMLPNLETFYIYHYNYTKVRPLDLNVFSSLKQLGTLYIS 503

Query:   450 SNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN 509
                 S   + S  P         S L  L +    I+ + P +I +    NL+ L+LS+N
Sbjct:   504 RIPISTTNITSDFP---------SNLEYLSLRSCNIT-DFPEFIRK--GRNLQILDLSNN 551

Query:   510 LVVSLQEP---YSISGIRFLDLHSNQLRG-NIPYM-SPNTSY--VDYSNNNFTSIPADIG 562
              +   Q P   + +  +  +DL +N L G ++    SP +    VD S+N F   P    
Sbjct:   552 KIKG-QVPDWLWRMPTLNSVDLSNNSLSGFHVSVKASPESQLTSVDLSSNAFQG-PL--- 606

Query:   563 NFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEV 622
              F+      YF  +NN+  G IP S+C  ++ ++LDLSNNNL+G++P CL T  SS  ++
Sbjct:   607 -FLPSKSLRYFSGSNNNFTGKIPRSICGLSSLEILDLSNNNLNGSLPWCLETLMSSLSDL 665

Query:   623 XXXXXXXXXXXXSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDN 682
                            IF     L+ LD+S N+++G +P SL  C+ L+VL++ SN I+D 
Sbjct:   666 DLRNNSLSGSLPE--IFMNATKLRSLDVSHNRMEGKLPGSLTGCSSLEVLNVGSNRINDM 723

Query:   683 FPCWLRNASSLQVLVLRSNNFSGHI-SCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTM 741
             FP  L +   LQVLVL SN F G + +       +P LQI+D++ N F G L   + +  
Sbjct:   724 FPFELNSLQKLQVLVLHSNKFHGTLHNVDGVWFGFPQLQIIDVSHNDFFGILPSDYFMNW 783

Query:   742 MVAETKSGSEVNHLGIEMPS----NQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNF 797
                 +K  + +    I+ PS    +  Y   + +  KG+ +++ +V  I+T+ID S N  
Sbjct:   784 TAMSSKKDNNIEPEYIQNPSVYGSSLGYYTSLVLMSKGVSMEMERVLTIYTAIDLSGNQL 843

Query:   798 EGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQXXXXX 857
              G IP  +G  + L  LNMS N  TG IPSS  NLK +ESLD+S NN+SG+IP +     
Sbjct:   844 HGKIPDSIGLLKELRILNMSSNGFTGHIPSSLANLKNLESLDISQNNISGEIPPELGTLS 903

Query:   858 XXXXXXXXXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNE----SQARXXXXXXXX 913
                         VG IP  TQ Q    +SYEGN GL GP L N      ++         
Sbjct:   904 SLAWINVSHNQLVGSIPQGTQFQRQKCSSYEGNPGLNGPSLENVCGHIKESTPTQTEPLE 963

Query:   914 XXXXXGEIDWFFIAMSIGFAVG--FGAVVSPLMFSVQVNKWY 953
                   E  + +IA  +GFA G  FG  +  ++ S + ++W+
Sbjct:   964 TKEEEEEESFSWIAAGLGFAPGVVFGLAMGYIVVSYK-HQWF 1004

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 234/729 (32%), Positives = 354/729 (48%)

Query:   186 DLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILH 245
             D SG +   L  SRS    R H N  L +    + +L  L  LDLS     G+ P  I +
Sbjct:    87 DKSGEVLE-LDLSRSCLQSRFHSNSSLFT----VLNLRFLTTLDLSYNYFSGQIPSCIEN 141

Query:   246 VPTLETLDLSINQLLQGSLPNFPKN-SSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSS 304
                L TLDLS N    G +P+   N S L  L LS     G +P   GN+  LT + V S
Sbjct:   142 FSHLTTLDLSKNYF-SGGIPSSIGNLSQLTFLDLSGNEFVGEMP-FFGNMNQLTNLYVDS 199

Query:   305 CNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPS-LHKXXXXXXXXXXXXXXXGGISSTFW 363
              + TG  P S+ NL  L  +  S N F G +PS +                 G + S+ +
Sbjct:   200 NDLTGIFPLSLLNLKHLSDLSLSRNQFTGTLPSNMSSLSNLEYFEAWGNAFTGTLPSSLF 259

Query:   364 EQLLNLQIVVLGHNSLSGSIPRSLFLLPN-LEMLQLSNNQFENQLPEIXXXXXXXXXXXX 422
               + +L  + L +N L+G++       P+ L +L +SNN F   +P+             
Sbjct:   260 T-IASLTSINLRNNQLNGTLEFGNISSPSTLTVLDISNNNFIGPIPKSISKFINLQDLDL 318

Query:   423 XXGNRLEGPVPISIFFELRNLYTLDLSS-NKFSRLKLASSKPRAIPILKNQSQLSVLDIS 481
                N  +GPV  SIF  L++L  L+LS  N  + + L      A+    + + +  +D+S
Sbjct:   319 SHLNT-QGPVDFSIFTNLKSLQLLNLSHLNTTTTIDL-----NAL-FSSHLNSIYSMDLS 371

Query:   482 DNQISGEVPNWIWEVGSGNL-KFLNLSHNLVVSLQEPY-SISGIRFLDLHSNQLRGNIP- 538
              N +S      + +     L   L LS   +    E   S   +  LD+ +N+++G +P 
Sbjct:   372 GNHVSATTKISVADHHPTQLISQLYLSGCGITEFPELLRSQHKMTNLDISNNKIKGQVPG 431

Query:   539 --YMSPNTSYVDYSNNNFTSIP--ADIG-NFMSETEYFYFVAANNSLAGVIPESVCKATN 593
               +  P   +VD SNN FT      + G + +++    Y V +NN+  G IP  +C   +
Sbjct:   432 WLWTLPKLIFVDLSNNIFTGFERSTEHGLSLITKPSMQYLVGSNNNFTGKIPSFICALRS 491

Query:   594 FQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDTIFPGDCGLQILDLSGN 653
                LDLS+NNL+G+IP C+     STL                +IF     L+ LD+  N
Sbjct:   492 LITLDLSDNNLNGSIPPCM-GNLKSTLSFLNLRQNRLGGGLPRSIFKS---LRSLDVGHN 547

Query:   654 QLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNK 713
             QL G +P+S    + L+VL++ +N I+D FP WL +   LQVLVLRSN F G    P + 
Sbjct:   548 QLVGKLPRSFIRLSALEVLNVENNRINDTFPFWLSSLKKLQVLVLRSNAFHG----PIHH 603

Query:   714 VSWPLLQIVDLACNKFSGRLSQK----WLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRV 769
              S+  L+I++L+ N+FSG L       W     +  T+  S+  ++G    S ++Y   V
Sbjct:   604 ASFHTLRIINLSHNQFSGTLPANYFVNWNAMSSLMATEDRSQEKYMG---DSFRYYHDSV 660

Query:   770 TVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSF 829
              +  KG+E++L+++  I+T++DFS N  EG IP  +G  + L+ LN+S NA TG IPSS 
Sbjct:   661 VLMNKGLEMELVRILKIYTALDFSENKLEGEIPRSIGLLKELHVLNLSSNAFTGHIPSSM 720

Query:   830 GNLKEIESLDLSMNNLSGKIPAQXXXXXXXXXXXXXXXXXVGKIPTSTQLQSFSPTSYEG 889
             GNL+E+ESLD+S N LSG+IP +                  G +P  TQ +  + +S++ 
Sbjct:   721 GNLRELESLDVSQNKLSGEIPQELGNLSYLAYMNFSHNQLGGLVPGGTQFRRQNCSSFKD 780

Query:   890 NKGLYGPPL 898
             N GLYG  L
Sbjct:   781 NPGLYGSSL 789

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 226/766 (29%), Positives = 352/766 (45%)

Query:   200 SLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQL 259
             SL +     N  L + +  L  L  L+ LDL+ C L G+ P  + ++  L  ++L  N+ 
Sbjct:    88 SLDIPNTFLNNYLKTNSS-LFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKF 146

Query:   260 LQGSLPNFPKN-SSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANL 318
             + G +P    N + LR LIL++  L+G +P S+GNL  L  +E+ S    G IP S+ +L
Sbjct:   147 V-GEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDL 205

Query:   319 TQLFHMDFSSNHFFGPIPS-LHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHN 377
              QL ++  +SN+  G IPS L                 G + ++    L+ L+++   +N
Sbjct:   206 KQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGN-LIELRVMSFENN 264

Query:   378 SLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIF 437
             SLSG+IP S   L  L +  LS+N F +  P                 N   GP P S+ 
Sbjct:   265 SLSGNIPISFANLTKLSIFVLSSNNFTSTFP-FDMSIFHNLEYFDVSYNSFSGPFPKSLL 323

Query:   438 FELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVG 497
               + +L ++ L  N+F+        P       + ++L  L +  N++ G +P  I  + 
Sbjct:   324 L-IPSLESIYLQENQFTG-------PIEFANTSSSTKLQDLILGRNRLHGPIPESISRLL 375

Query:   498 SGNLKFLNLSHNLVVSLQEPY--SISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFT 555
               NL+ L++SHN       P    +  +  LDL  N L G +P      + +  S+N+F+
Sbjct:   376 --NLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFS 433

Query:   556 SIPADIGNFMSETEYFYFVAAN-NSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLIT 614
             S      N   E      +  N NS  G IP  +CK ++   LDLSNN  SG+IP+C+  
Sbjct:   434 SFE----NTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRN 489

Query:   615 KSSSTLEVXXXXXXXXXXXXSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDL 674
              S S  E+               IF     L  LD+S NQL+G  PKSL NC  L+++++
Sbjct:   490 FSGSIKELNLGDNNFSGTLPD--IFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNV 547

Query:   675 RSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLS 734
              SN I D FP WL +  SL VL LRSN F G +      + +  L+I+D++ N FSG L 
Sbjct:   548 ESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLP 607

Query:   735 QKWLLTMMVAETKSGSEVNHLGIEM--PSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDF 792
               +        T +  E++    E    ++ +Y     V  KG+++   ++   F +IDF
Sbjct:   608 PYYFSNWKDMTTLT-EEMDQYMTEFWRYADSYYHEMEMVN-KGVDMSFERIRRDFRAIDF 665

Query:   793 SSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQ 852
             S N   G IP  +G  + L  LN+S NA T  IP    NL ++E+LD+S N LSG+IP  
Sbjct:   666 SGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQD 725

Query:   853 XXXXXXXXXXXXXXXXXVGKIPTSTQLQSFSPTSYEGNKGLYG-PPLTNESQARXXXXXX 911
                               G +P  TQ Q    +S+  N GLYG   +  ++ A       
Sbjct:   726 LAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYGLEDICRDTGALNPTSQL 785

Query:   912 XXXXXXXGE--IDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYND 955
                     E   +W   A++ G  V  G V+    ++   ++W+ +
Sbjct:   786 PEDLSEAEENMFNWVAAAIAYGPGVLCGLVIGHF-YTSHNHEWFTE 830

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 255/832 (30%), Positives = 389/832 (46%)

Query:   150 LTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRL-HY 208
             + EL L   DL+        +L  L +LQ L LS  DLS  +       + L V+ L   
Sbjct:    81 VVELDLGNSDLNGR-LRSNSSLFRLQHLQSLDLSYNDLSCTLPDSSGNFKYLRVLNLLGC 139

Query:   209 N-YG-LSSGTEFLAHLTNLKALDLS-ECGLQGKFPEKILHVPTLETLDLSINQLLQGSLP 265
             N +G + +    L++LT+L   DLS    L G+  + + ++  L  L L+  +   G +P
Sbjct:   140 NLFGEIPTSLRSLSYLTDL---DLSYNDDLTGEILDSMGNLKHLRVLSLTSCKFT-GKIP 195

Query:   266 NFPKNSS-LRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHM 324
             +   N + L DL LS    +G LPDS+GNL++L  + +  CNF G IP S+ +L+ L  +
Sbjct:   196 SSLGNLTYLTDLDLSWNYFTGELPDSMGNLKSLRVLNLHRCNFFGKIPTSLGSLSNLTDL 255

Query:   325 DFSSNHFF--GP--IPSLHKXXXXXXXXXXXXXXXG-GISSTFWEQLL--------NLQI 371
             D S N F   GP  + SL++                  +SS  ++ +L         L+ 
Sbjct:   256 DISKNEFTSEGPDSMSSLNRLTDFQLMLLNLSSLTNVDLSSNQFKAMLPSNMSSLSKLEA 315

Query:   372 VVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXXXXXG-NRLEG 430
               +  NS SG+IP SLF+LP+L  L L  N F   L +I              G N + G
Sbjct:   316 FDISGNSFSGTIPSSLFMLPSLIKLDLGTNDFSGPL-KIGNISSPSNLQELYIGENNING 374

Query:   431 PVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDN-QISGEV 489
             P+P SI  +L  L  L LS      +   S   +    LK+   L +  I+ N   S  +
Sbjct:   375 PIPRSIL-KLVGLSALSLSFWDTGGIVDFSIFLQ----LKSLRSLDLSGINLNISSSHHL 429

Query:   490 PNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIP---YMSPNTSY 546
             P+ +  +    L   N+S      L+   S+     LD+ +NQ+ G +P   +  P   Y
Sbjct:   430 PSHMMHL---ILSSCNISQ-FPKFLENQTSLY---HLDISANQIEGQVPEWLWRLPTLRY 482

Query:   547 VDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSG 606
             V+ + N F+     + N       + F+A++N  +G IP +VC+      L LSNNN SG
Sbjct:   483 VNIAQNAFSGELTMLPN-----PIYSFIASDNKFSGEIPRAVCE---IGTLVLSNNNFSG 534

Query:   607 TIPACLITKSSSTLEVXXXXXXXXXXXXSDTIFPGDCGLQILDLSGNQLQGVVPKSLANC 666
             +IP C    S+ TL +             +    G   L+ LD+  N+L G  PKSL NC
Sbjct:   535 SIPPCFEI-SNKTLSILHLRNNSLSGVIPEESLHGY--LRSLDVGSNRLSGQFPKSLINC 591

Query:   667 NMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLAC 726
             + LQ L++  N I+D FP WL++  +LQ+LVLRSN F G I  P + +S+  L+  D++ 
Sbjct:   592 SYLQFLNVEENRINDTFPSWLKSLPNLQLLVLRSNEFHGPIFSPGDSLSFSKLRFFDISE 651

Query:   727 NKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSN--QFYEVRVTVTVKGIEIKLLKVP 784
             N+FSG L   + +   V  +      N  G  +  +  + +   V +T+KG+ ++L+   
Sbjct:   652 NRFSGVLPSDYFVGWSVMSSFVDIIDNTPGFTVVGDDQESFHKSVVLTIKGLNMELVGSG 711

Query:   785 -NIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMN 843
               I+ +ID S N  EG IP  +G  + L  LNMS+NA TG IP S  NL  ++SLDLS N
Sbjct:   712 FEIYKTIDVSGNRLEGDIPESIGILKELIVLNMSNNAFTGHIPPSLSNLSNLQSLDLSQN 771

Query:   844 NLSGKIPAQXXXXXXXXXXXXXXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQ 903
              LSG IP +                  G IP  TQ+QS + +S+  N GL G PL  +  
Sbjct:   772 RLSGSIPGELGELTFLARMNFSYNMLEGPIPQGTQIQSQNSSSFAENPGLCGAPLQKKCG 831

Query:   904 ARXXXXXXXXXXXXXGEIDWFFIAMSIGFAVGF--GAVVSPLMFSVQVNKWY 953
                              + W  +A +IG+  G   G  +  ++ S +   W+
Sbjct:   832 GEEEEDKEKEEKDKG--LSW--VAAAIGYVPGLFCGLAIGHILTSYK-RDWF 878

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	967
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-60
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-51
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-39
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  223 bits (571), Expect = 1e-60
 Identities = 197/633 (31%), Positives = 299/633 (47%), Gaps = 77/633 (12%)

Query: 341 SRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLP-NLEMLQLS 399
           S  + ++DLS  N+SG ISS  + +L  +Q + L +N LSG IP  +F    +L  L LS
Sbjct: 68  SSRVVSIDLSGKNISGKISSAIF-RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 400 NNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLA 459
           NN F   +P     S   L  LDLS N L G +P  I     +L  LDL  N      L 
Sbjct: 127 NNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNV-----LV 177

Query: 460 SSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGS-GNLKFLNLSHNLVVSLQEPY 518
              P     L N + L  L ++ NQ+ G++P    E+G   +LK++ L +N  +S + PY
Sbjct: 178 GKIP---NSLTNLTSLEFLTLASNQLVGQIPR---ELGQMKSLKWIYLGYN-NLSGEIPY 230

Query: 519 SISGI---RFLDLHSNQLRGNIPYMSPNTSYVDY---SNNNFT-SIPADIGNFMSETEYF 571
            I G+     LDL  N L G IP    N   + Y     N  +  IP  I +     +  
Sbjct: 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL---QKLI 287

Query: 572 YFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLN 631
               ++NSL+G IPE V +  N ++L L +NN +G IP  L   S   L+VL L  N  +
Sbjct: 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFS 345

Query: 632 GTLSDTIFPGDCG----LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWL 687
           G +     P + G    L +LDLS N L G +P+ L +   L  L L SN +    P  L
Sbjct: 346 GEI-----PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400

Query: 688 RNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRL-SQKW----LLTMM 742
               SL+ + L+ N+FSG +  P      PL+  +D++ N   GR+ S+KW    L  + 
Sbjct: 401 GACRSLRRVRLQDNSFSGEL--PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458

Query: 743 VAETK--------SGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSS 794
           +A  K         GS+     +++  NQF           +  KL  +  +   +  S 
Sbjct: 459 LARNKFFGGLPDSFGSK-RLENLDLSRNQFSGA--------VPRKLGSLSELM-QLKLSE 508

Query: 795 NNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLA 854
           N   G IP E+   + L +L++SHN L+G IP+SF  +  +  LDLS N LSG+IP  L 
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568

Query: 855 SLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQARPP--ELPPS 912
           ++  L  +N+S+N+L G +P++    + + ++  GN  L G    + +   PP   +  +
Sbjct: 569 NVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG---GDTTSGLPPCKRVRKT 625

Query: 913 PPPASSGEIDWFFIAMSIGFAVGFGAVVSPLMF 945
           P         WF+I  ++G  +    V    +F
Sbjct: 626 P-------SWWFYITCTLGAFLVLALVAFGFVF 651

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  195 bits (498), Expect = 2e-51
 Identities = 202/654 (30%), Positives = 282/654 (43%), Gaps = 137/654 (20%)

Query: 14  PSTKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLN 73
           P   LS W+S  S+D C W G+ C+ +  V+ +DLS + I G + +A   F L Y+Q++N
Sbjct: 44  PLKYLSNWNS--SADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAI--FRLPYIQTIN 99

Query: 74  LGFTLFKG------FQIPSRL----------------GNLTNLTYLNLSQGGFAGEIPTE 111
           L      G      F   S L                G++ NL  L+LS    +GEIP +
Sbjct: 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND 159

Query: 112 ISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKAL 171
           I S + L  LDL G         V +  +   L NLT                       
Sbjct: 160 IGSFSSLKVLDLGG--------NVLVGKIPNSLTNLT----------------------- 188

Query: 172 SFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEF-LAHLTNLKALDL 230
               +L+ L+L+   L G I   L + +SL  I L YN  LS    + +  LT+L  LDL
Sbjct: 189 ----SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN-NLSGEIPYEIGGLTSLNHLDL 243

Query: 231 SECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLI---LSHTGLSGTL 287
               L G  P  + ++  L+ L L  N+ L G +P  P   SL+ LI   LS   LSG +
Sbjct: 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNK-LSGPIP--PSIFSLQKLISLDLSDNSLSGEI 300

Query: 288 PDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPS-LHKSRNLNN 346
           P+ +  L+NL  + + S NFTG IP ++ +L +L  +   SN F G IP  L K  NL  
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360

Query: 347 LDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQ 406
           LDLS NNL+G I         NL  ++L  NSL G IP+SL    +L  ++L +N F  +
Sbjct: 361 LDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419

Query: 407 LPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAI 466
           LP        V F LD+S N L+G +  S  +++ +L  L L+ NKF            +
Sbjct: 420 LPSEFTKLPLVYF-LDISNNNLQGRIN-SRKWDMPSLQMLSLARNKFF---------GGL 468

Query: 467 PILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFL 526
           P      +L  LD+S NQ SG VP           K  +LS               +  L
Sbjct: 469 PDSFGSKRLENLDLSRNQFSGAVPR----------KLGSLSE--------------LMQL 504

Query: 527 DLHSNQLRGNIP---YMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGV 583
            L  N+L G IP           +D S+N  +                          G 
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLS--------------------------GQ 538

Query: 584 IPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDT 637
           IP S  +      LDLS N LSG IP  L    S  L  +N+  N+L+G+L  T
Sbjct: 539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES--LVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  158 bits (401), Expect = 2e-39
 Identities = 156/501 (31%), Positives = 221/501 (44%), Gaps = 57/501 (11%)

Query: 46  LDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFA 105
           LDL    ++G + N+    +L  L+ L L      G QIP  LG + +L ++ L     +
Sbjct: 169 LDLGGNVLVGKIPNSLT--NLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNNLS 225

Query: 106 GEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGT 165
           GEIP EI  LT L  LDL         Y      +   L NL  L  L L +  LS    
Sbjct: 226 GEIPYEIGGLTSLNHLDL--------VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277

Query: 166 EWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNL 225
               ++  L  L  L LS   LSG I                         E +  L NL
Sbjct: 278 ---PSIFSLQKLISLDLSDNSLSGEI------------------------PELVIQLQNL 310

Query: 226 KALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSG 285
           + L L      GK P  +  +P L+ L L  N+       N  K+++L  L LS   L+G
Sbjct: 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370

Query: 286 TLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPS-LHKSRNL 344
            +P+ + +  NL ++ + S +  G IP S+     L  +    N F G +PS   K   +
Sbjct: 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430

Query: 345 NNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFE 404
             LD+S NNL G I+S  W+ + +LQ++ L  N   G +P S F    LE L LS NQF 
Sbjct: 431 YFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFS 488

Query: 405 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPR 464
             +P     S S L  L LS N+L G +P       + L +LDLS N+ S    AS    
Sbjct: 489 GAVPR-KLGSLSELMQLKLSENKLSGEIP-DELSSCKKLVSLDLSHNQLSGQIPAS---- 542

Query: 465 AIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIR 524
                     LS LD+S NQ+SGE+P  +  V S  L  +N+SHN    L      +G  
Sbjct: 543 ----FSEMPVLSQLDLSQNQLSGEIPKNLGNVES--LVQVNISHNH---LHGSLPSTGA- 592

Query: 525 FLDLHSNQLRGNIPYMSPNTS 545
           FL ++++ + GNI     +T+
Sbjct: 593 FLAINASAVAGNIDLCGGDTT 613

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 79.5 bits (196), Expect = 4e-15
 Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 16/149 (10%)

Query: 799 GPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNF 858
           G IP ++ + R L ++N+S N++ G+IP S G++  +E LDLS N+ +G IP  L  L  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 859 LSVLNLSYNNLVGKIPTSTQLQSFSPTSYE--GNKGLYGPPLTNESQARPPELPPSPPPA 916
           L +LNL+ N+L G++P +   +     S+    N GL G           P L    P  
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG----------IPGLRACGPHL 541

Query: 917 SSGEIDWFFIAMSIGFAVGFGAVVSPLMF 945
           S G      I ++ G +V F  +V   M 
Sbjct: 542 SVGAK----IGIAFGVSVAFLFLVICAMC 566

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.1 bits (164), Expect = 3e-11
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 7/77 (9%)

Query: 789 SIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGK 848
           SI+ S N+  G IP  +G   SL  L++S+N+  GSIP S G L  +  L+L+ N+LSG+
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 849 IPAQL-------ASLNF 858
           +PA L       AS NF
Sbjct: 506 VPAALGGRLLHRASFNF 522

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 7e-10
 Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 5/88 (5%)

Query: 577 NNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSD 636
           N  L G IP  + K  + Q ++LS N++ G IP  L + +S  LEVL+L  N+ NG++ +
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS--LEVLDLSYNSFNGSIPE 484

Query: 637 TIFPGD-CGLQILDLSGNQLQGVVPKSL 663
           ++  G    L+IL+L+GN L G VP +L
Sbjct: 485 SL--GQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 9e-08
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 3/99 (3%)

Query: 611 CLITKSSSTLEVLNLGRNN--LNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM 668
           C    +     +  LG +N  L G + + I      LQ ++LSGN ++G +P SL +   
Sbjct: 409 CQFDSTKGKWFIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITS 467

Query: 669 LQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHI 707
           L+VLDL  N  + + P  L   +SL++L L  N+ SG +
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 32  WSGVRC---DEAGH--VIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPS 86
           WSG  C      G   + GL L  + + G + N   +  L++LQS+NL     +G  IP 
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPND--ISKLRHLQSINLSGNSIRG-NIPP 460

Query: 87  RLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSG 125
            LG++T+L  L+LS   F G IP  +  LT L  L+L+G
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.2 bits (130), Expect = 2e-07
 Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 9/239 (3%)

Query: 214 SGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSL 273
            G+E L +L  L +LDL+   L      ++L +  L +LDL  N +           S+L
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRL-RSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNL 142

Query: 274 RDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFG 333
           ++L LS   +  +LP  + NL NL  +++S  + +  +P  ++NL+ L ++D S N    
Sbjct: 143 KELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISD 200

Query: 334 PIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNL 393
             P +     L  LDLS N++      +    L NL  + L +N L   +P S+  L NL
Sbjct: 201 LPPEIELLSALEELDLSNNSII--ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNL 257

Query: 394 EMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNK 452
           E L LSNNQ  + +  + ++++  L +LDLSGN L   +P+     L     L+L    
Sbjct: 258 ETLDLSNNQISS-ISSLGSLTN--LRELDLSGNSLSNALPLIALLLLLLELLLNLLLTL 313

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 5e-07
 Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 333 GPIPS-LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLP 391
           G IP+ + K R+L +++LS N++ G I  +    + +L+++ L +NS +GSIP SL  L 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 392 NLEMLQLSNNQFENQLP 408
           +L +L L+ N    ++P
Sbjct: 491 SLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 5e-07
 Identities = 69/238 (28%), Positives = 102/238 (42%), Gaps = 28/238 (11%)

Query: 333 GPIPSLHKSRNLNNLD----LSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLF 388
             I SL  S NL NL     L  N      + +   +L NL  + L +N+++   P    
Sbjct: 78  SGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGL 137

Query: 389 LLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDL 448
           L  NL+ L LS+N+ E+    + N+ +  L +LDLS N L     +     L NL  LDL
Sbjct: 138 LKSNLKELDLSDNKIESLPSPLRNLPN--LKNLDLSFNDLSDLPKLLS--NLSNLNNLDL 193

Query: 449 SSNKFSRLKLASSKPRAIP--ILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNL 506
           S NK S L        A+    L N S + +L    N                NL  L L
Sbjct: 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLK--------------NLSGLEL 239

Query: 507 SHNLVVSLQEPYS-ISGIRFLDLHSNQLRGNIPYMSPNTS--YVDYSNNNFTSIPADI 561
           S+N +  L E    +S +  LDL +NQ+  +I  +   T+   +D S N+ ++    I
Sbjct: 240 SNNKLEDLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLSNALPLI 296

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 28/213 (13%)

Query: 542 PNTSYVDYSNNNFTSIP----ADIGNFMSETEYFYFVAANNSL----AGVIPESVCKATN 593
           P+   +  S N    IP    + +              ++N+L     GV+ ES+ ++++
Sbjct: 51  PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSS 109

Query: 594 FQVLDLSNNNLSGT---IPACLITKSSSTLEVLNLGRNNLNGTLSDTI---FPGDCGLQI 647
            Q L L+NN L      + A  +      LE L LGRN L G   + +      +  L+ 
Sbjct: 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKE 169

Query: 648 LDLSGNQLQGVVPKSLA-----NCNMLQVLDLRSNYISDN----FPCWLRNASSLQVLVL 698
           L+L+ N +     ++LA     NCN L+VLDL +N ++D         L +  SL+VL L
Sbjct: 170 LNLANNGIGDAGIRALAEGLKANCN-LEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228

Query: 699 RSNNFSGHIS---CPRNKVSWPLLQIVDLACNK 728
             NN +   +             L  + L+CN 
Sbjct: 229 GDNNLTDAGAAALASALLSPNISLLTLSLSCND 261

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.2 bits (113), Expect = 6e-07
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 620 LEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYI 679
           L+ L+L  N L   + D  F G   L++LDLSGN L  + P++ +    L+ LDL  N +
Sbjct: 2   LKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 8e-07
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 347 LDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQ 406
           L L    L G I +    +L +LQ + L  NS+ G+IP SL  + +LE+L LS N F   
Sbjct: 423 LGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 407 LPEISNVSSSVLFDLDLSGNRLEGPVPISI 436
           +PE     +S L  L+L+GN L G VP ++
Sbjct: 482 IPESLGQLTS-LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 5/116 (4%)

Query: 227 ALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGT 286
            L L   GL+G  P  I  +  L++++LS N +     P+    +SL  L LS+   +G+
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 287 LPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFH---MDFSSNHFFGPIPSLH 339
           +P+S+G L +L  + ++  + +G +P ++     L H    +F+ N     IP L 
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGR--LLHRASFNFTDNAGLCGIPGLR 535

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 1/101 (0%)

Query: 257 NQLLQGSLPN-FPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSM 315
           NQ L+G +PN   K   L+ + LS   + G +P S+G++ +L  +++S  +F G IP S+
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 316 ANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSG 356
             LT L  ++ + N   G +P+    R L+    +F + +G
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 71/298 (23%), Positives = 108/298 (36%), Gaps = 79/298 (26%)

Query: 216 TEFLAHLTNLKALDLSECGLQ---GKFPEKILHV-PTLETLDLSINQLLQGSLPNFPKNS 271
           TE L  L  L+ L L    L     K     L   P+L+ L LS+N+   G +P      
Sbjct: 16  TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET--GRIP-----R 68

Query: 272 SLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHF 331
            L+ L                 L+ LT                      L  +D S N  
Sbjct: 69  GLQSL-----------------LQGLT------------------KGCGLQELDLSDNAL 93

Query: 332 F----GPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQL----LNLQIVVLGHNSLSG-- 381
                G + SL +S +L  L L+ N L         + L      L+ +VLG N L G  
Sbjct: 94  GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153

Query: 382 --SIPRSLFLLPNLEMLQLSNNQFENQ--------LPEISNVSSSVLFDLDLSGNRLEGP 431
             ++ ++L    +L+ L L+NN   +         L    N+    + DL+ +G   EG 
Sbjct: 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL---EVLDLNNNGLTDEGA 210

Query: 432 VPISIFFE-LRNLYTLDLSSNKFSR---LKLASSKPRAIPILKNQSQLSVLDISDNQI 485
             ++     L++L  L+L  N  +      LAS+      +L     L  L +S N I
Sbjct: 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASA------LLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 50.3 bits (120), Expect = 6e-06
 Identities = 80/295 (27%), Positives = 129/295 (43%), Gaps = 37/295 (12%)

Query: 50  WEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIP 109
           W+    G+ + TGL ++    S NL        +IP  L   TNL  L LS      E+P
Sbjct: 627 WD----GVHSLTGLRNIDLRGSKNLK-------EIPD-LSMATNLETLKLSDCSSLVELP 674

Query: 110 TEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTEL--------HLDRVDLS 161
           + I  L +L  LD+S    +E      I   SL+  NL+  + L        ++  +DL 
Sbjct: 675 SSIQYLNKLEDLDMSRCENLE-ILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLD 733

Query: 162 ASGTEWCKALSFLPNLQVLSLSGCDLSG--------PINHYLAK-SRSLSVIRLHYNYGL 212
            +  E   +   L NL  L L  C++          P+   +   S SL+ + L     L
Sbjct: 734 ETAIEEFPSNLRLENLDELIL--CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL 791

Query: 213 SSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSS 272
                 + +L  L+ L++  C      P  I ++ +LE+LDLS    L+ + P+   N S
Sbjct: 792 VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR-TFPDISTNIS 849

Query: 273 LRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFS 327
             DL LS TG+   +P  I    NL+ ++++ CN    +  +++ L  L  +DFS
Sbjct: 850 --DLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901

syringae 6; Provisional. Length = 1153

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 810 SLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
           +L +L++S+N LT     +F  L  ++ LDLS NNL+   P   + L  L  L+LS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 20/60 (33%), Positives = 28/60 (46%)

Query: 644 GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNF 703
            L+ LDLS N+L  +   +      L+VLDL  N ++   P       SL+ L L  NN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 48.5 bits (115), Expect = 2e-05
 Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 35/222 (15%)

Query: 442 NLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNL 501
           N+ TL  +SN+ + +      P  +P       +  +++S N+I+ E+P    E     L
Sbjct: 221 NIKTLYANSNQLTSI------PATLP-----DTIQEMELSINRIT-ELP----ERLPSAL 264

Query: 502 KFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADI 561
           + L+L HN +  L E      +R+L ++ N +R    ++    ++++  +N+ T++P  +
Sbjct: 265 QSLDLFHNKISCLPENLP-EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL 323

Query: 562 GNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLE 621
              +         A  N+L   +P S+      QVLD+S N ++  +P  L      T+ 
Sbjct: 324 PPGLK-----TLEAGENALTS-LPASLPPE--LQVLDVSKNQIT-VLPETL----PPTIT 370

Query: 622 VLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSL 663
            L++ RN L     +   P    LQI+  S N L   +P+SL
Sbjct: 371 TLDVSRNALTNLPEN--LPA--ALQIMQASRNNL-VRLPESL 407

Length = 754

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 343 NLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQ 402
           NL +LDLS N L+  I    ++ L NL+++ L  N+L+   P +   LP+L  L LS N 
Sbjct: 1   NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 403 F 403
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 8e-05
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 222 LTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLP-NFPKNSSLRDLILSH 280
           L +L++++LS   ++G  P  +  + +LE LDLS N    GS+P +  + +SLR L L+ 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-FNGSIPESLGQLTSLRILNLNG 499

Query: 281 TGLSGTLPDSIG 292
             LSG +P ++G
Sbjct: 500 NSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.7 bits (108), Expect = 9e-05
 Identities = 75/281 (26%), Positives = 121/281 (43%), Gaps = 20/281 (7%)

Query: 71  SLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIE 130
            L L  +      +PS L  L +L  L+ S    + +    + +L  L +LDL+      
Sbjct: 49  RLALNLSSNTLLLLPSSLSRLLSLDLLSPSGIS-SLDGSENLLNLLPLPSLDLNLN---- 103

Query: 131 YSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGP 190
                 + +    L  LT LT L LD  +++          S L  L +       L  P
Sbjct: 104 -----RLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP 158

Query: 191 INHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLE 250
           + +      +L  + L +N  LS   + L++L+NL  LDLS   +    P +I  +  LE
Sbjct: 159 LRNL----PNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALE 212

Query: 251 TLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGP 310
            LDLS N +++  L +     +L  L LS+      LP+SIGNL NL  +++S+   +  
Sbjct: 213 ELDLSNNSIIE-LLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQIS-- 268

Query: 311 IPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSF 351
              S+ +LT L  +D S N     +P +     L  L L+ 
Sbjct: 269 SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNL 309

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 14/120 (11%)

Query: 576 ANNSLAGVIPESVCKA----TNFQVLDLSNNNLS--GTIPACLITKSSSTLEVLNLGRNN 629
           ANN +      ++ +      N +VLDL+NN L+  G         S  +LEVLNLG NN
Sbjct: 173 ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232

Query: 630 LNG----TLSDTIFPGDCGLQILDLSGNQLQGVVPKSLA----NCNMLQVLDLRSNYISD 681
           L       L+  +   +  L  L LS N +     K LA        L  LDLR N   +
Sbjct: 233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 526 LDLHSNQLRGNIPYMSPNTSY---VDYSNNNFT-SIPADIGNFMSETEYFYFVAANNSLA 581
           L L +  LRG IP       +   ++ S N+   +IP  +G+  S         + NS  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE---VLDLSYNSFN 479

Query: 582 GVIPESVCKATNFQVLDLSNNNLSGTIPACL 612
           G IPES+ + T+ ++L+L+ N+LSG +PA L
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 47/213 (22%), Positives = 72/213 (33%), Gaps = 38/213 (17%)

Query: 85  PSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFL 144
              L     L  L+LS      +    + SL R  +L     + +  +  +    L L  
Sbjct: 74  LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSL---QELKLNNN-GLGDRGLRLLA 129

Query: 145 QNLTE----LTELHLDRVDLSASGTE-WCKALSFLPNLQVLSLSGCDLSGPINHYLAKSR 199
           + L +    L +L L R  L  +  E   KAL    +L+ L+L+   +       LA+  
Sbjct: 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG- 188

Query: 200 SLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQ----GKFPEKILHVPTLETLDLS 255
                              L    NL+ LDL+  GL         E +  + +LE L+L 
Sbjct: 189 -------------------LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229

Query: 256 INQL----LQGSLPNFPK-NSSLRDLILSHTGL 283
            N L               N SL  L LS   +
Sbjct: 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 6e-04
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%)

Query: 396 LQLSNNQFENQLP-EISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFS 454
           L L N      +P +IS +    L  ++LSGN + G +P S    + +L  LDLS N F+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRH--LQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFN 479

Query: 455 RLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVP 490
                 S P ++  L   + L +L+++ N +SG VP
Sbjct: 480 -----GSIPESLGQL---TSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 58/297 (19%), Positives = 93/297 (31%), Gaps = 83/297 (27%)

Query: 267 FPKNSSLRDLILSHTGLSGT----LPDSIGNLENLTRVEVSSCNFTGPIPPS-------M 315
            PK   L+ L L    L       L  ++    +L  + +S  N TG IP         +
Sbjct: 19  LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSL-NETGRIPRGLQSLLQGL 77

Query: 316 ANLTQLFHMDFSSNHFF----GPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQI 371
                L  +D S N       G + SL +S +L  L L+ N L         + L +L  
Sbjct: 78  TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP- 136

Query: 372 VVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGP 431
                              P LE L L  N+ E    E             L+       
Sbjct: 137 -------------------PALEKLVLGRNRLEGASCE------------ALAK------ 159

Query: 432 VPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDN-------- 483
                    R+L  L+L++N        +        LK    L VLD+++N        
Sbjct: 160 ----ALRANRDLKELNLANNGI----GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211

Query: 484 QISGEVPNWIWEVGSGNLKFLNLSHNLV-------VSLQEPYSISGIRFLDLHSNQL 533
            ++  + +        +L+ LNL  N +       ++         +  L L  N +
Sbjct: 212 ALAETLASLK------SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 38/182 (20%), Positives = 58/182 (31%), Gaps = 39/182 (21%)

Query: 143 FLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLS 202
            L     L EL L    L   G    ++L    +LQ L L+   L       LAK     
Sbjct: 76  GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG---- 131

Query: 203 VIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKIL----HVPTLETLDLSINQ 258
                                 L+ L L    L+G   E +         L+ L+L+ N 
Sbjct: 132 ---------------LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176

Query: 259 LLQGSLPN----FPKNSSLRDLILSHTG--------LSGTLPDSIGNLENLTRVEVSSCN 306
           +    +         N +L  L L++ G        L+ TL      L++L  + +   N
Sbjct: 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS----LKSLEVLNLGDNN 232

Query: 307 FT 308
            T
Sbjct: 233 LT 234

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 6/38 (15%)

Query: 1  MKNSLILSNDSGFPSTKLSQWSSHQSSDCCDWSGVRCD 38
           K+SL     +G PS  LS W+   SSD C W+GV CD
Sbjct: 11 FKSSL-----NGDPSGALSSWNP-SSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 788 TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFG 830
             +D S N+F G IP  +G+  SL  LN++ N+L+G +P++ G
Sbjct: 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 392 NLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSN 451
           NL+ L LSNN+    +P+ +      L  LDLSGN L   +    F  L +L +LDLS N
Sbjct: 1   NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGN 58

Query: 452 KF 453
             
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 46/196 (23%), Positives = 66/196 (33%), Gaps = 22/196 (11%)

Query: 270 NSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSN 329
              L DL   +  LSG          NL+  ++S+ N  G      A+L+     D    
Sbjct: 38  ELQLGDLNFENANLSGLDLSGA----NLSGADLSNANLRGADLSKGADLSG---ADLEGA 90

Query: 330 HFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLL---NLQIVVLGHNSLSGSIPRS 386
           +  G         NL+  +LS  NLS    +      L   NL    L   +LSG+    
Sbjct: 91  NLRG--------ANLSGANLSGANLSNATRANLSGADLSGANLSNANLTGANLSGANLNG 142

Query: 387 LFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTL 446
                NL    LS           +++S + L   DL G  L G           NL   
Sbjct: 143 A----NLSNANLSGADLSGADLSGADLSGANLSGADLRGANLSGANLSGADLRNANLSGA 198

Query: 447 DLSSNKFSRLKLASSK 462
           DLS    +   L ++ 
Sbjct: 199 DLSGADLTGANLVNAN 214

Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	967
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
PLN03150	623	hypothetical protein; Provisional	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.27
PLN03150	623	hypothetical protein; Provisional	99.2
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.19
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.12
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.11
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.08
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.0
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.97
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.88
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.73
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.69
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.62
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.49
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.24
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.17
KOG4341	483	consensus F-box protein containing LRR [General fu	98.16
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.15
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.12
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.07
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.01
KOG4341	483	consensus F-box protein containing LRR [General fu	97.87
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.76
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.74
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.73
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.73
PRK15386	426	type III secretion protein GogB; Provisional	97.68
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.66
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.65
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.57
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.43
PRK15386	426	type III secretion protein GogB; Provisional	97.4
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	96.95
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.91
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.69
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.68
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.62
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.15
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.14
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.67
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.67
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.63
KOG4308	478	consensus LRR-containing protein [Function unknown	93.85
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.92
KOG4308	478	consensus LRR-containing protein [Function unknown	91.79
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.38
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.28
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.54
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.89
smart00370	26	LRR Leucine-rich repeats, outliers.	85.89
smart00370	26	LRR Leucine-rich repeats, outliers.	84.81
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.81
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.02
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.57
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.12

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5e-67  Score=660.77  Aligned_cols=565  Identities=35%  Similarity=0.564  Sum_probs=378.4

Q ss_pred             CCcCCCCCCCCCCCcccceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCcccc-CCCCC
Q 046844           16 TKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLG-NLTNL   94 (967)
Q Consensus        16 ~~l~~w~~~~~~~~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~-~l~~L   94 (967)
                      ..+++|  ..+.|||.|.||+|+..++|+.|+|+++.+.|.+  ++.+..+++|++|+|++|.+.+. +|..+. .+++|
T Consensus        46 ~~~~~w--~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~--~~~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L  120 (968)
T PLN00113         46 KYLSNW--NSSADVCLWQGITCNNSSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSL  120 (968)
T ss_pred             ccCCCC--CCCCCCCcCcceecCCCCcEEEEEecCCCccccC--ChHHhCCCCCCEEECCCCccCCc-CChHHhccCCCC
Confidence            468899  6678999999999987789999999999998877  67888999999999999998876 886654 88999


Q ss_pred             CEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHHhcCC
Q 046844           95 TYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFL  174 (967)
Q Consensus        95 ~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l  174 (967)
                      ++|+|++|.+.+.+|.  +.+++|++|++++                                                 
T Consensus       121 ~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~-------------------------------------------------  149 (968)
T PLN00113        121 RYLNLSNNNFTGSIPR--GSIPNLETLDLSN-------------------------------------------------  149 (968)
T ss_pred             CEEECcCCccccccCc--cccCCCCEEECcC-------------------------------------------------
Confidence            9999999988877774  3455555555554                                                 


Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEec
Q 046844          175 PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDL  254 (967)
Q Consensus       175 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  254 (967)
                                |.+.+..|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++
T Consensus       150 ----------n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        150 ----------NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             ----------CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence                      3333344444555555555555555555555555666666666666666666555555555555555544


Q ss_pred             cCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCcccccc
Q 046844          255 SINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGP  334 (967)
Q Consensus       255 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  334 (967)
                      ++|.                        +.+.+|..++.+++|++|++++|.+++.+|..+.++++|++|++++|.+.+.
T Consensus       220 ~~n~------------------------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  275 (968)
T PLN00113        220 GYNN------------------------LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP  275 (968)
T ss_pred             cCCc------------------------cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence            4443                        3344555566666666666666666666666666666666666666655443


Q ss_pred             CccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccC
Q 046844          335 IPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVS  414 (967)
Q Consensus       335 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  414 (967)
                      +|                       .. +..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+       
T Consensus       276 ~p-----------------------~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------  324 (968)
T PLN00113        276 IP-----------------------PS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI-------  324 (968)
T ss_pred             Cc-----------------------hh-HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC-------
Confidence            33                       22 334445555555555555555555555566666665555544321       


Q ss_pred             CCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchh
Q 046844          415 SSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIW  494 (967)
Q Consensus       415 ~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~  494 (967)
                                        |..+ ..++                                +|+.|++++|.+++.+|..+ 
T Consensus       325 ------------------~~~~-~~l~--------------------------------~L~~L~L~~n~l~~~~p~~l-  352 (968)
T PLN00113        325 ------------------PVAL-TSLP--------------------------------RLQVLQLWSNKFSGEIPKNL-  352 (968)
T ss_pred             ------------------ChhH-hcCC--------------------------------CCCEEECcCCCCcCcCChHH-
Confidence                              1111 2222                                23333333333333333222 


Q ss_pred             ccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeee
Q 046844          495 EVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFV  574 (967)
Q Consensus       495 ~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~  574 (967)
                                                                                                      
T Consensus       353 --------------------------------------------------------------------------------  352 (968)
T PLN00113        353 --------------------------------------------------------------------------------  352 (968)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCc
Q 046844          575 AANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ  654 (967)
Q Consensus       575 l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~  654 (967)
                                    ..+++|+.|++++|++++.+|..+....  +|+.|++++|++.+.+|.. +..+++|+.|++++|+
T Consensus       353 --------------~~~~~L~~L~Ls~n~l~~~~p~~~~~~~--~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~  415 (968)
T PLN00113        353 --------------GKHNNLTVLDLSTNNLTGEIPEGLCSSG--NLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNS  415 (968)
T ss_pred             --------------hCCCCCcEEECCCCeeEeeCChhHhCcC--CCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCE
Confidence                          1222333333333333333333333222  3444444444444444443 4445555555555555


Q ss_pred             cCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCc
Q 046844          655 LQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLS  734 (967)
Q Consensus       655 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p  734 (967)
                      +++.+|..|..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.|.+  |..+ ..++|+.||+++|+++|.+|
T Consensus       416 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--p~~~-~~~~L~~L~ls~n~l~~~~~  492 (968)
T PLN00113        416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL--PDSF-GSKRLENLDLSRNQFSGAVP  492 (968)
T ss_pred             eeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec--Cccc-ccccceEEECcCCccCCccC
Confidence            55555556666666666666666666666666666666666666666666654  4433 34678888888888888777


Q ss_pred             HHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEE
Q 046844          735 QKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYAL  814 (967)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L  814 (967)
                      ..+.                                            .++.|+.|+|++|+++|.+|.+++.+++|++|
T Consensus       493 ~~~~--------------------------------------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  528 (968)
T PLN00113        493 RKLG--------------------------------------------SLSELMQLKLSENKLSGEIPDELSSCKKLVSL  528 (968)
T ss_pred             hhhh--------------------------------------------hhhccCEEECcCCcceeeCChHHcCccCCCEE
Confidence            5431                                            35568889999999999999999999999999


Q ss_pred             ECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCCCcCCccCCCccCCCCCCC
Q 046844          815 NMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLY  894 (967)
Q Consensus       815 ~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc  894 (967)
                      +|++|.++|.+|..|+++++|+.|||++|+++|.+|..+.+++.|+.+++++|+++|.+|...++.++...+|.||+++|
T Consensus       529 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc  608 (968)
T PLN00113        529 DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLC  608 (968)
T ss_pred             ECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 046844          895 GPP  897 (967)
Q Consensus       895 g~~  897 (967)
                      |.+
T Consensus       609 ~~~  611 (968)
T PLN00113        609 GGD  611 (968)
T ss_pred             CCc
Confidence            864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.9e-54  Score=544.65  Aligned_cols=512  Identities=34%  Similarity=0.510  Sum_probs=406.6

Q ss_pred             CCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccc-CCCCCcEEEccCccccccCccccccCcccEEECC
Q 046844          272 SLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMA-NLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLS  350 (967)
Q Consensus       272 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~  350 (967)
                      .++.|++++|.+.+.++..+..+++|++|++++|++.+.+|..+. .+++|++|++++|.+++.+|. ...++|++|+++
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls  148 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLS  148 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECc
Confidence            566677777777777777777777888888888777776766544 777788888887777766664 234578888888


Q ss_pred             CCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCC
Q 046844          351 FNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEG  430 (967)
Q Consensus       351 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  430 (967)
                      +|.+.+.+|.. ++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|.. ...+.+|+.|++++|.+.+
T Consensus       149 ~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        149 NNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             CCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCC
Confidence            88887777766 777888888888888887777888888888888888888777655542 2245666666666666666


Q ss_pred             CCChhhhccCCCCCEEECCCCcccccccCCCCCccCCC-CCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccc
Q 046844          431 PVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPI-LKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN  509 (967)
Q Consensus       431 ~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~-l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n  509 (967)
                      .+|..+ ..+++|++|++++|+++         +.+|. +.++++|++|++++|++++.+|..+..              
T Consensus       227 ~~p~~l-~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--------------  282 (968)
T PLN00113        227 EIPYEI-GGLTSLNHLDLVYNNLT---------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS--------------  282 (968)
T ss_pred             cCChhH-hcCCCCCEEECcCceec---------cccChhHhCCCCCCEEECcCCeeeccCchhHhh--------------
Confidence            666655 66777777777777665         33444 666667777777777776666655543              


Q ss_pred             cccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhh
Q 046844          510 LVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVC  589 (967)
Q Consensus       510 ~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~  589 (967)
                                +++|+.|++++|.+.+.+|....                     .+..++.  |++++|.+.+.+|..++
T Consensus       283 ----------l~~L~~L~Ls~n~l~~~~p~~~~---------------------~l~~L~~--L~l~~n~~~~~~~~~~~  329 (968)
T PLN00113        283 ----------LQKLISLDLSDNSLSGEIPELVI---------------------QLQNLEI--LHLFSNNFTGKIPVALT  329 (968)
T ss_pred             ----------ccCcCEEECcCCeeccCCChhHc---------------------CCCCCcE--EECCCCccCCcCChhHh
Confidence                      23455666666665555443211                     1223333  66677777777888888


Q ss_pred             cCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCC
Q 046844          590 KATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML  669 (967)
Q Consensus       590 ~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  669 (967)
                      .+++|+.|++++|.+++.+|..+....  +|+.|++++|++++.+|.. +..+.+|+.|++++|++.+.+|..+..+++|
T Consensus       330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~--~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L  406 (968)
T PLN00113        330 SLPRLQVLQLWSNKFSGEIPKNLGKHN--NLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNSLEGEIPKSLGACRSL  406 (968)
T ss_pred             cCCCCCEEECcCCCCcCcCChHHhCCC--CCcEEECCCCeeEeeCChh-HhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence            999999999999999999999887776  9999999999999999988 8888999999999999999999999999999


Q ss_pred             CEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCC
Q 046844          670 QVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSG  749 (967)
Q Consensus       670 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~  749 (967)
                      +.|++++|++++..|..|.++++|+.|++++|++++.+  |..+..+++|+.|++++|++.|.+|..+            
T Consensus       407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~p~~~------------  472 (968)
T PLN00113        407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--NSRKWDMPSLQMLSLARNKFFGGLPDSF------------  472 (968)
T ss_pred             CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc--ChhhccCCCCcEEECcCceeeeecCccc------------
Confidence            99999999999999999999999999999999999987  8888899999999999999998888432            


Q ss_pred             cccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccc
Q 046844          750 SEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSF  829 (967)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~  829 (967)
                                                       ....|+.||+++|+++|.+|..++.++.|+.|+|++|+++|.+|..+
T Consensus       473 ---------------------------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  519 (968)
T PLN00113        473 ---------------------------------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL  519 (968)
T ss_pred             ---------------------------------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHH
Confidence                                             23568899999999999999999999999999999999999999999


Q ss_pred             cCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCCC-cCCccCCCccCCCCCC
Q 046844          830 GNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTSYEGNKGL  893 (967)
Q Consensus       830 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~-~~~~~~~~~~~gn~~l  893 (967)
                      +++++|++|||++|+++|.+|..+.+++.|+.||+++|+++|.+|... .+..+......+|+..
T Consensus       520 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  584 (968)
T PLN00113        520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH  584 (968)
T ss_pred             cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence            999999999999999999999999999999999999999999999753 2233334445566533

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-35  Score=314.50  Aligned_cols=316  Identities=24%  Similarity=0.279  Sum_probs=207.8

Q ss_pred             hhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCC
Q 046844          363 WEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRN  442 (967)
Q Consensus       363 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~  442 (967)
                      +..++.|+.|||+.|.++..-...|..-.++++|+|++|+|+..- ...+..+.+|..|.++.|+++ .+|...|.++++
T Consensus       145 L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~-~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~  222 (873)
T KOG4194|consen  145 LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLE-TGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPK  222 (873)
T ss_pred             HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccc-cccccccchheeeecccCccc-ccCHHHhhhcch
Confidence            444555555555555554333334444445555555555554321 112223345555555555555 667777777777


Q ss_pred             CCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCC--CCC
Q 046844          443 LYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEP--YSI  520 (967)
Q Consensus       443 L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~~  520 (967)
                      |+.|+|..|+|..++.-        .|..+++|+.|.+..|.|.......|+.+  .+++.|+|+.|+++.+...  +.+
T Consensus       223 L~~LdLnrN~irive~l--------tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l--~kme~l~L~~N~l~~vn~g~lfgL  292 (873)
T KOG4194|consen  223 LESLDLNRNRIRIVEGL--------TFQGLPSLQNLKLQRNDISKLDDGAFYGL--EKMEHLNLETNRLQAVNEGWLFGL  292 (873)
T ss_pred             hhhhhccccceeeehhh--------hhcCchhhhhhhhhhcCcccccCcceeee--cccceeecccchhhhhhccccccc
Confidence            77777777776643221        16667777777777777765555555433  3466666666665554322  224


Q ss_pred             CCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcc
Q 046844          521 SGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLS  600 (967)
Q Consensus       521 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls  600 (967)
                      +.|+.|++|+|.|                                               ....++++..+.+|++|+||
T Consensus       293 t~L~~L~lS~NaI-----------------------------------------------~rih~d~WsftqkL~~LdLs  325 (873)
T KOG4194|consen  293 TSLEQLDLSYNAI-----------------------------------------------QRIHIDSWSFTQKLKELDLS  325 (873)
T ss_pred             chhhhhccchhhh-----------------------------------------------heeecchhhhcccceeEecc
Confidence            4444444444433                                               33334455567788888888


Q ss_pred             cCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCc---ccccCCCCCCEEECCCC
Q 046844          601 NNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP---KSLANCNMLQVLDLRSN  677 (967)
Q Consensus       601 ~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N  677 (967)
                      +|+++..-++.+..+.  .|++|+|++|.+. .+.+.+|.++++|+.|||++|.|+..+.   ..|.++++|+.|++.+|
T Consensus       326 ~N~i~~l~~~sf~~L~--~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN  402 (873)
T KOG4194|consen  326 SNRITRLDEGSFRVLS--QLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN  402 (873)
T ss_pred             ccccccCChhHHHHHH--HhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence            8888855555665555  7888888888887 7777778888888888888888886554   35778888888888888


Q ss_pred             ccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhh
Q 046844          678 YISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMV  743 (967)
Q Consensus       678 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~  743 (967)
                      +|..+...+|.++++|+.|+|.+|.|....  |..|..+ .|+.|-+..-.|-+.+...|+..|+.
T Consensus       403 qlk~I~krAfsgl~~LE~LdL~~NaiaSIq--~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~  465 (873)
T KOG4194|consen  403 QLKSIPKRAFSGLEALEHLDLGDNAIASIQ--PNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLY  465 (873)
T ss_pred             eeeecchhhhccCcccceecCCCCcceeec--ccccccc-hhhhhhhcccceEEeccHHHHHHHHH
Confidence            888888888888888999999888887766  7788888 88888888888888888888866554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.5e-38  Score=322.10  Aligned_cols=490  Identities=24%  Similarity=0.310  Sum_probs=238.0

Q ss_pred             CCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEc
Q 046844          247 PTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDF  326 (967)
Q Consensus       247 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  326 (967)
                      ..|+.+.+++|.+.. ..+.+..+..|.+|++.+|++. ..|.+++.+..++.++.++|++. .+|+.+..+.+|++++.
T Consensus        45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             cchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            445566666665422 2233444556666666666665 45555666666666666666665 45556666666666666


Q ss_pred             cCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccc
Q 046844          327 SSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQ  406 (967)
Q Consensus       327 ~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  406 (967)
                      ++|.+....+....+..++.++..+|+++ ..|+. +..+.+|..+++.+|++....|..+ +++.|++||...|-+.  
T Consensus       122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~--  196 (565)
T KOG0472|consen  122 SSNELKELPDSIGRLLDLEDLDATNNQIS-SLPED-MVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE--  196 (565)
T ss_pred             cccceeecCchHHHHhhhhhhhccccccc-cCchH-HHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh--
Confidence            66666555555555555666666666655 34444 4555556666666666553332222 3555555555555554  


Q ss_pred             cccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccC
Q 046844          407 LPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQIS  486 (967)
Q Consensus       407 ~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~  486 (967)
                                              .+|..+ +.+.+|+.|++..|++.          .+|.|..|..|+++.++.|+|.
T Consensus       197 ------------------------tlP~~l-g~l~~L~~LyL~~Nki~----------~lPef~gcs~L~Elh~g~N~i~  241 (565)
T KOG0472|consen  197 ------------------------TLPPEL-GGLESLELLYLRRNKIR----------FLPEFPGCSLLKELHVGENQIE  241 (565)
T ss_pred             ------------------------cCChhh-cchhhhHHHHhhhcccc----------cCCCCCccHHHHHHHhcccHHH
Confidence                                    444444 55555555555555443          2333455555555555555554


Q ss_pred             CCCCcchhccCCCCcceeecccccccCcCCCCC-CCCccEEeCCCCCCCCCCCCCC-CCCceeeccCCcCCCCCcchhcc
Q 046844          487 GEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYS-ISGIRFLDLHSNQLRGNIPYMS-PNTSYVDYSNNNFTSIPADIGNF  564 (967)
Q Consensus       487 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~-~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~ls~n~l~~i~~~~~~~  564 (967)
                       .+|..... ..+++..||+.+|+++++|.... +++|++||+|+|.+++..+... -+++.|-+.+|.+..|..++...
T Consensus       242 -~lpae~~~-~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~  319 (565)
T KOG0472|consen  242 -MLPAEHLK-HLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISK  319 (565)
T ss_pred             -hhHHHHhc-ccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcc
Confidence             33333321 12345555555555555544333 4445555555555554333211 13444444555444333332211


Q ss_pred             ccccceeeee--ecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCC
Q 046844          565 MSETEYFYFV--AANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGD  642 (967)
Q Consensus       565 ~~~l~~~~l~--l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l  642 (967)
                      -+..-..|+.  +..-.++..-.      ..-..-+.    ..+..|....   ..+.+.|++++-+++ .+|+.+|...
T Consensus       320 gT~~vLKyLrs~~~~dglS~se~------~~e~~~t~----~~~~~~~~~~---~i~tkiL~~s~~qlt-~VPdEVfea~  385 (565)
T KOG0472|consen  320 GTQEVLKYLRSKIKDDGLSQSEG------GTETAMTL----PSESFPDIYA---IITTKILDVSDKQLT-LVPDEVFEAA  385 (565)
T ss_pred             cHHHHHHHHHHhhccCCCCCCcc------cccccCCC----CCCcccchhh---hhhhhhhcccccccc-cCCHHHHHHh
Confidence            1100000010  00000000000      00000000    0001111100   013444445554444 4444434321


Q ss_pred             C--cccEEeCCCCccCCCCcccccCCCCCCE-EECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCC
Q 046844          643 C--GLQILDLSGNQLQGVVPKSLANCNMLQV-LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLL  719 (967)
Q Consensus       643 ~--~L~~L~L~~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L  719 (967)
                      .  -....+++.|++. .+|..+..++.+.+ +++++|.++ -+|..+..+++|..|+|++|.+...   |..++.+..|
T Consensus       386 ~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~L---P~e~~~lv~L  460 (565)
T KOG0472|consen  386 KSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDL---PEEMGSLVRL  460 (565)
T ss_pred             hhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhc---chhhhhhhhh
Confidence            1  1444555555555 34444444443333 333444333 3555666666666666666666544   6666666667


Q ss_pred             cEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccC
Q 046844          720 QIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEG  799 (967)
Q Consensus       720 ~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g  799 (967)
                      +.||+|.|+|. .+|..+.                                            .+..+..+-.++|++..
T Consensus       461 q~LnlS~NrFr-~lP~~~y--------------------------------------------~lq~lEtllas~nqi~~  495 (565)
T KOG0472|consen  461 QTLNLSFNRFR-MLPECLY--------------------------------------------ELQTLETLLASNNQIGS  495 (565)
T ss_pred             heecccccccc-cchHHHh--------------------------------------------hHHHHHHHHhccccccc
Confidence            77777777664 2343331                                            01112222234455544


Q ss_pred             CCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCcccc
Q 046844          800 PIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS  846 (967)
Q Consensus       800 ~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~  846 (967)
                      .-|..+++|.+|.+|||.+|.+. .||..+|+|++|++|++++|.|+
T Consensus       496 vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  496 VDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            44444777777777777777776 67777777777777777777776

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-34  Score=306.10  Aligned_cols=366  Identities=24%  Similarity=0.257  Sum_probs=294.9

Q ss_pred             CCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCC
Q 046844           69 LQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLT  148 (967)
Q Consensus        69 L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~  148 (967)
                      -+.||+++|.+... -+..|.++++|+.+++.+|.++ .+|...+...+|++|+|.+|                      
T Consensus        80 t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N----------------------  135 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHN----------------------  135 (873)
T ss_pred             eeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeecc----------------------
Confidence            45578888877755 4566777888888888877777 77774444555666666654                      


Q ss_pred             CCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEE
Q 046844          149 ELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKAL  228 (967)
Q Consensus       149 ~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  228 (967)
                                .|+.+.   .+.+..+|.|+.||||.|.|+......|..-.++++|+|++|.++..-...|.++.+|..|
T Consensus       136 ----------~I~sv~---se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl  202 (873)
T KOG4194|consen  136 ----------LISSVT---SEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL  202 (873)
T ss_pred             ----------cccccc---HHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence                      333332   2456678889999999998888777788888899999999999998888889999999999


Q ss_pred             eccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCC
Q 046844          229 DLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFT  308 (967)
Q Consensus       229 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  308 (967)
                      .|+.|+++...+..|.++++|+.|+|..|++.....-.|.++++|+.|.+..|.+...-...|..+.++++|+|+.|+++
T Consensus       203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~  282 (873)
T KOG4194|consen  203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ  282 (873)
T ss_pred             ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence            99999999777778888999999999999988777788999999999999999999777788999999999999999999


Q ss_pred             CCCCccccCCCCCcEEEccCccccccCc-cccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhc
Q 046844          309 GPIPPSMANLTQLFHMDFSSNHFFGPIP-SLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSL  387 (967)
Q Consensus       309 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  387 (967)
                      ..-..++.++++|+.|++++|.+...-+ .|....+|++|+|++|+++. +++..+..+..|++|.|++|.++..-...|
T Consensus       283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~-l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af  361 (873)
T KOG4194|consen  283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR-LDEGSFRVLSQLEELNLSHNSIDHLAEGAF  361 (873)
T ss_pred             hhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc-CChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence            7777889999999999999999976544 45555699999999999984 444448999999999999999987777788


Q ss_pred             cCCCCCCEEeCcCCcCcccccc--ccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCcc
Q 046844          388 FLLPNLEMLQLSNNQFENQLPE--ISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRA  465 (967)
Q Consensus       388 ~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~  465 (967)
                      ..+.+|++|||++|.+...+.+  ..+.++++|+.|++.+|++. .||...|.+++.|++|+|.+|.|..+....     
T Consensus       362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nA-----  435 (873)
T KOG4194|consen  362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNA-----  435 (873)
T ss_pred             HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccc-----
Confidence            8899999999999998866543  33446788888888888887 788888888888888888888887665443     


Q ss_pred             CCCCCCCCCccEEECcC
Q 046844          466 IPILKNQSQLSVLDISD  482 (967)
Q Consensus       466 ip~l~~~~~L~~L~Ls~  482 (967)
                         |..+ .|++|.+..
T Consensus       436 ---Fe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  436 ---FEPM-ELKELVMNS  448 (873)
T ss_pred             ---cccc-hhhhhhhcc
Confidence               4444 566665543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.1e-37  Score=311.75  Aligned_cols=474  Identities=27%  Similarity=0.342  Sum_probs=365.2

Q ss_pred             CCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEc
Q 046844          223 TNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEV  302 (967)
Q Consensus       223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  302 (967)
                      ..|+.+.+++|.+. .+.+.+.++..|.+|++++|++.+ ..+++..+..++.++.++|++. .+|..++.+.+|..+++
T Consensus        45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             cchhhhhhccCchh-hccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            44566666666665 334445666666666666665432 2234445666667777777776 77888889999999999


Q ss_pred             cCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCC
Q 046844          303 SSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGS  382 (967)
Q Consensus       303 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  382 (967)
                      ++|.+. .+|+.++.+..|+.++..+|++....++...+.++..+++.+|++. ..|+..+. ++.|++++...|.++ .
T Consensus       122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-t  197 (565)
T KOG0472|consen  122 SSNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-T  197 (565)
T ss_pred             ccccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-c
Confidence            999988 6777888889999999999999887777777778999999999998 44555244 999999999999887 7


Q ss_pred             cChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCC
Q 046844          383 IPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSK  462 (967)
Q Consensus       383 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~  462 (967)
                      +|+.++.+.+|..|++..|++. .+|+  +.+++.|+++++..|++. .+|.....+++++..||+.+|+++.++..   
T Consensus       198 lP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde---  270 (565)
T KOG0472|consen  198 LPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDE---  270 (565)
T ss_pred             CChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchH---
Confidence            8999999999999999999997 4554  346888999999999998 88888877999999999999999754332   


Q ss_pred             CccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCC-C------CCCccE----EeCCCC
Q 046844          463 PRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPY-S------ISGIRF----LDLHSN  531 (967)
Q Consensus       463 ~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~-~------~~~L~~----L~Ls~n  531 (967)
                            +.-+.+|++||+|+|.|+ ..|..++.+   .|+.|.+.+|.+..+.... .      ++.|+.    =.++.-
T Consensus       271 ------~clLrsL~rLDlSNN~is-~Lp~sLgnl---hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s  340 (565)
T KOG0472|consen  271 ------ICLLRSLERLDLSNNDIS-SLPYSLGNL---HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS  340 (565)
T ss_pred             ------HHHhhhhhhhcccCCccc-cCCcccccc---eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence                  666788999999999998 556555554   5899999999887652211 0      222221    011111


Q ss_pred             CC----CCC-CCCCC------CCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcE-EEc
Q 046844          532 QL----RGN-IPYMS------PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQV-LDL  599 (967)
Q Consensus       532 ~l----~~~-~~~~~------~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~-L~L  599 (967)
                      +=    .+. .+..+      .+.+.|++++-+++.+|.+++.....--....+++.|++. .+|..+..+..+.+ +++
T Consensus       341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~l  419 (565)
T KOG0472|consen  341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVL  419 (565)
T ss_pred             cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHh
Confidence            00    011 11111      2678899999999999999887655544556899999987 56777766666544 556


Q ss_pred             ccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCcc
Q 046844          600 SNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYI  679 (967)
Q Consensus       600 s~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  679 (967)
                      ++|.++ -+|..+...+  +|..|+|++|-+. .+|.. ++.+..||.|+++.|++. .+|.....+..|+.+-.++|++
T Consensus       420 snn~is-fv~~~l~~l~--kLt~L~L~NN~Ln-~LP~e-~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi  493 (565)
T KOG0472|consen  420 SNNKIS-FVPLELSQLQ--KLTFLDLSNNLLN-DLPEE-MGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQI  493 (565)
T ss_pred             hcCccc-cchHHHHhhh--cceeeecccchhh-hcchh-hhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccc
Confidence            666664 7888887766  9999999999998 89998 888889999999999998 7888888888899999999999


Q ss_pred             ccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCc
Q 046844          680 SDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFS  730 (967)
Q Consensus       680 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~  730 (967)
                      ....|+.+.++.+|..|||.+|.+...   |..++++.+|+.|++.+|+|.
T Consensus       494 ~~vd~~~l~nm~nL~tLDL~nNdlq~I---Pp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  494 GSVDPSGLKNMRNLTTLDLQNNDLQQI---PPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccChHHhhhhhhcceeccCCCchhhC---ChhhccccceeEEEecCCccC
Confidence            998888899999999999999998754   999999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=6.3e-36  Score=333.50  Aligned_cols=482  Identities=29%  Similarity=0.380  Sum_probs=262.0

Q ss_pred             EeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCC
Q 046844          228 LDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNF  307 (967)
Q Consensus       228 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  307 (967)
                      +|++.+.+. .+|..+..-..++.|++..|-+...+.+...+.-+|+.|++++|.+. ..|..+..+.+|+.|+++.|.+
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i   80 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI   80 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence            455666665 55655555555777777777655444444444445666666666665 5566666666666666666666


Q ss_pred             CCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhc
Q 046844          308 TGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSL  387 (967)
Q Consensus       308 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  387 (967)
                      . ..|....++.+|+++.|.+|.+.                        ..|.. +..+.+|++|+++.|++. .+|..+
T Consensus        81 ~-~vp~s~~~~~~l~~lnL~~n~l~------------------------~lP~~-~~~lknl~~LdlS~N~f~-~~Pl~i  133 (1081)
T KOG0618|consen   81 R-SVPSSCSNMRNLQYLNLKNNRLQ------------------------SLPAS-ISELKNLQYLDLSFNHFG-PIPLVI  133 (1081)
T ss_pred             h-hCchhhhhhhcchhheeccchhh------------------------cCchh-HHhhhcccccccchhccC-CCchhH
Confidence            5 44555555666666666555554                        33333 455555555555555554 455555


Q ss_pred             cCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCC
Q 046844          388 FLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIP  467 (967)
Q Consensus       388 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip  467 (967)
                      ..++.++.+..++|.....++.      ..++.+++..|.+.+.++.++ ..+..  .|+|.+|.+..++          
T Consensus       134 ~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i-~~l~~--~ldLr~N~~~~~d----------  194 (1081)
T KOG0618|consen  134 EVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDI-YNLTH--QLDLRYNEMEVLD----------  194 (1081)
T ss_pred             HhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcccchhcch-hhhhe--eeecccchhhhhh----------
Confidence            5555555666665521111111      115555666665555555554 44443  5777777665322          


Q ss_pred             CCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCC-CCCCce
Q 046844          468 ILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYM-SPNTSY  546 (967)
Q Consensus       468 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~  546 (967)
                       +..+.+|+.+..+.|+++...      ...++++                      .|+.++|.++...+.. +.++++
T Consensus       195 -ls~~~~l~~l~c~rn~ls~l~------~~g~~l~----------------------~L~a~~n~l~~~~~~p~p~nl~~  245 (1081)
T KOG0618|consen  195 -LSNLANLEVLHCERNQLSELE------ISGPSLT----------------------ALYADHNPLTTLDVHPVPLNLQY  245 (1081)
T ss_pred             -hhhccchhhhhhhhcccceEE------ecCcchh----------------------eeeeccCcceeecccccccccee
Confidence             445566666666666654211      1112344                      4444444444322222 234555


Q ss_pred             eeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECC
Q 046844          547 VDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLG  626 (967)
Q Consensus       547 L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls  626 (967)
                      +++++|+++.+|                           ++++.+.+|+.++..+|+++ .+|..+...+  +|+.|.+.
T Consensus       246 ~dis~n~l~~lp---------------------------~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~--~L~~l~~~  295 (1081)
T KOG0618|consen  246 LDISHNNLSNLP---------------------------EWIGACANLEALNANHNRLV-ALPLRISRIT--SLVSLSAA  295 (1081)
T ss_pred             eecchhhhhcch---------------------------HHHHhcccceEecccchhHH-hhHHHHhhhh--hHHHHHhh
Confidence            555555555554                           34455566666666666664 5555555444  56666666


Q ss_pred             CCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCC-CCEEECCCCccccccchhhhcCCCCCEEEccCCccce
Q 046844          627 RNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM-LQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSG  705 (967)
Q Consensus       627 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  705 (967)
                      +|.+. .+|.. ..+...|++|+|..|+|....+..|.-... |+.|+.+.|++....--.=...+.|+.|++.+|++++
T Consensus       296 ~nel~-yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd  373 (1081)
T KOG0618|consen  296 YNELE-YIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD  373 (1081)
T ss_pred             hhhhh-hCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence            66665 45554 444566666666666665433333333332 5555566666554321111124556666666666665


Q ss_pred             ecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCC
Q 046844          706 HISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPN  785 (967)
Q Consensus       706 ~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  785 (967)
                      ..  -..+..+.+|++|+|++|++. ++|...+                                           ..+.
T Consensus       374 ~c--~p~l~~~~hLKVLhLsyNrL~-~fpas~~-------------------------------------------~kle  407 (1081)
T KOG0618|consen  374 SC--FPVLVNFKHLKVLHLSYNRLN-SFPASKL-------------------------------------------RKLE  407 (1081)
T ss_pred             cc--hhhhccccceeeeeecccccc-cCCHHHH-------------------------------------------hchH
Confidence            43  445556666666666666653 3443332                                           1234


Q ss_pred             cceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCcccccc-CCccccCCCCCCeEEc
Q 046844          786 IFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGK-IPAQLASLNFLSVLNL  864 (967)
Q Consensus       786 ~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~l~l  864 (967)
                      .|+.|+||+|+++ .+|+++..++.|++|..-.|++. ..| .+.++++|+.+|+|.|+|+-. +|.... -+.|++||+
T Consensus       408 ~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdl  483 (1081)
T KOG0618|consen  408 ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDL  483 (1081)
T ss_pred             HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-Ccccceeec
Confidence            4566666666665 55666666666666666666666 445 566666666666666666533 222221 256666666


Q ss_pred             cCCc
Q 046844          865 SYNN  868 (967)
Q Consensus       865 s~N~  868 (967)
                      ++|.
T Consensus       484 SGN~  487 (1081)
T KOG0618|consen  484 SGNT  487 (1081)
T ss_pred             cCCc
Confidence            6664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.9e-34  Score=321.80  Aligned_cols=458  Identities=28%  Similarity=0.381  Sum_probs=261.1

Q ss_pred             EEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCC
Q 046844          180 LSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQL  259 (967)
Q Consensus       180 L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~  259 (967)
                      +|++++.+.- +|..+-.-..++.|+++.|.+.....+...+.-+|+.|++++|.+. .+|..+..+.+|+.|+++.|.+
T Consensus         3 vd~s~~~l~~-ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i   80 (1081)
T KOG0618|consen    3 VDASDEQLEL-IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI   80 (1081)
T ss_pred             cccccccCcc-cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence            4455555543 4444444445777888888766655555556666888888888887 6788888888888888888876


Q ss_pred             CCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCcccc
Q 046844          260 LQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLH  339 (967)
Q Consensus       260 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  339 (967)
                      ...+ .....+.+|+++.|..|.+. ..|..+..+.+|+.|++++|++. .+|..+..++.+..+..++|......+.  
T Consensus        81 ~~vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~--  155 (1081)
T KOG0618|consen   81 RSVP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ--  155 (1081)
T ss_pred             hhCc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc--
Confidence            5444 33445667777777777665 66777777777777777777776 5666666677777777766622211111  


Q ss_pred             ccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCccc
Q 046844          340 KSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLF  419 (967)
Q Consensus       340 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~  419 (967)
                        ..++.+++..|.+.+.++.. +..++.  .|+|.+|.+.   ...+.++++|+.+....|++..              
T Consensus       156 --~~ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~--------------  213 (1081)
T KOG0618|consen  156 --TSIKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSE--------------  213 (1081)
T ss_pred             --ccchhhhhhhhhcccchhcc-hhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccce--------------
Confidence              12455555555555544443 333333  4555555554   1223444455555444444431              


Q ss_pred             EEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCC
Q 046844          420 DLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSG  499 (967)
Q Consensus       420 ~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  499 (967)
                                  +.    ..-++|+.|+.++|.++.+...          .--.+|+++|+++|+++ .+|+|+..+  .
T Consensus       214 ------------l~----~~g~~l~~L~a~~n~l~~~~~~----------p~p~nl~~~dis~n~l~-~lp~wi~~~--~  264 (1081)
T KOG0618|consen  214 ------------LE----ISGPSLTALYADHNPLTTLDVH----------PVPLNLQYLDISHNNLS-NLPEWIGAC--A  264 (1081)
T ss_pred             ------------EE----ecCcchheeeeccCcceeeccc----------cccccceeeecchhhhh-cchHHHHhc--c
Confidence                        11    2335666666666666533211          11246778888888877 455776554  4


Q ss_pred             CcceeecccccccCcCCCC-CCCCccEEeCCCCCCCCCCCCC--CCCCceeeccCCcCCCCCcchhccccccceeeeeec
Q 046844          500 NLKFLNLSHNLVVSLQEPY-SISGIRFLDLHSNQLRGNIPYM--SPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAA  576 (967)
Q Consensus       500 ~L~~L~Ls~n~l~~l~~~~-~~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~  576 (967)
                      +|+.+++.+|.++.++... ...+|+.+.+..|.++-..|..  ...+++|++..|++..+|+.+..             
T Consensus       265 nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~-------------  331 (1081)
T KOG0618|consen  265 NLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA-------------  331 (1081)
T ss_pred             cceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHh-------------
Confidence            5777777777776665432 3556666666666665544432  23455555555555555542211             


Q ss_pred             CCcccccCChhhhcC-CCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCcc
Q 046844          577 NNSLAGVIPESVCKA-TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQL  655 (967)
Q Consensus       577 ~n~l~~~~p~~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l  655 (967)
                                   .. .+|..|..+.|++. ..|. ........|+.|++.+|.+++..-.. +.+...|++|+|++|++
T Consensus       332 -------------v~~~~l~~ln~s~n~l~-~lp~-~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  332 -------------VLNASLNTLNVSSNKLS-TLPS-YEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRL  395 (1081)
T ss_pred             -------------hhhHHHHHHhhhhcccc-cccc-ccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeeccccc
Confidence                         01 12455555556554 3332 22112225666666666665443332 45555666666666666


Q ss_pred             CCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccC
Q 046844          656 QGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKF  729 (967)
Q Consensus       656 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l  729 (967)
                      .......+.++..|+.|+||+|+++. +|..+.++..|++|...+|++...   | .+..+++|+++|+|.|.+
T Consensus       396 ~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~~f---P-e~~~l~qL~~lDlS~N~L  464 (1081)
T KOG0618|consen  396 NSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLLSF---P-ELAQLPQLKVLDLSCNNL  464 (1081)
T ss_pred             ccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCceeec---h-hhhhcCcceEEecccchh
Confidence            64444455566666666666666654 445666666666666666665533   4 455555555555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.6e-31  Score=284.24  Aligned_cols=368  Identities=28%  Similarity=0.374  Sum_probs=297.2

Q ss_pred             cCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHH
Q 046844           64 FDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLF  143 (967)
Q Consensus        64 ~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~  143 (967)
                      +-|+..|-.|+++|.++|..+|..+..++.++.|.|....+. .+|+.++.|.+|+||.+++|+..         .+...
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~---------~vhGE   73 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI---------SVHGE   73 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH---------hhhhh
Confidence            445667778888888887678888888888888888888777 78888888888888888875432         33444


Q ss_pred             hcCCCCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCC
Q 046844          144 LQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLT  223 (967)
Q Consensus       144 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~  223 (967)
                      +..++.||.+.++.|++...+  .+..+-.+..|+.||||+|++.. .|..+..-+++.+|+|++|.+....-..|-+++
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsG--iP~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt  150 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSG--IPTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT  150 (1255)
T ss_pred             hccchhhHHHhhhccccccCC--CCchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence            677788888888888776543  35667788899999999998875 677788888999999999998877667788999


Q ss_pred             CCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCC-CCccccccCCCCCCEEEc
Q 046844          224 NLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS-GTLPDSIGNLENLTRVEV  302 (967)
Q Consensus       224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L  302 (967)
                      .|-.||||+|++. .+|..+..+.+|++|+|++|.+....+..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|+
T Consensus       151 DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl  229 (1255)
T KOG0444|consen  151 DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL  229 (1255)
T ss_pred             hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence            9999999999998 67777889999999999999987777777888889999999886543 367888999999999999


Q ss_pred             cCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCC-
Q 046844          303 SSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG-  381 (967)
Q Consensus       303 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-  381 (967)
                      |.|++. ..|+.+.++++|+.|+|++|.++..-.......+|++|+++.|+++ .+|.. +..+++|+.|.+.+|+++- 
T Consensus       230 S~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~a-vcKL~kL~kLy~n~NkL~Fe  306 (1255)
T KOG0444|consen  230 SENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDA-VCKLTKLTKLYANNNKLTFE  306 (1255)
T ss_pred             cccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHH-HhhhHHHHHHHhccCccccc
Confidence            999998 7899999999999999999999865444444458999999999998 67777 7889999999999998763 


Q ss_pred             CcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCc
Q 046844          382 SIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNK  452 (967)
Q Consensus       382 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~  452 (967)
                      -+|..++.+.+|+.+...+|.+. .+|+ ....|..|+.|.++.|.+. .+|..+ .-++.|+.||+..|.
T Consensus       307 GiPSGIGKL~~Levf~aanN~LE-lVPE-glcRC~kL~kL~L~~NrLi-TLPeaI-HlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  307 GIPSGIGKLIQLEVFHAANNKLE-LVPE-GLCRCVKLQKLKLDHNRLI-TLPEAI-HLLPDLKVLDLRENP  373 (1255)
T ss_pred             CCccchhhhhhhHHHHhhccccc-cCch-hhhhhHHHHHhccccccee-echhhh-hhcCCcceeeccCCc
Confidence            47889999999999999998886 3443 2335677888888888776 677777 778888888888775

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=2.4e-30  Score=275.37  Aligned_cols=364  Identities=27%  Similarity=0.403  Sum_probs=235.1

Q ss_pred             CCCCEEEccCCCCC-CCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEEC
Q 046844          271 SSLRDLILSHTGLS-GTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDL  349 (967)
Q Consensus       271 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L  349 (967)
                      +-.+-.++++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++....-....++.|+.+.+
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV   85 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence            33444555555555 355666666666666666666655 5566666666666666666666544444444556666666


Q ss_pred             CCCCCCC-CCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcC
Q 046844          350 SFNNLSG-GISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRL  428 (967)
Q Consensus       350 ~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l  428 (967)
                      ..|++.. .||.. +-.+..|+.|+|++|++. ..|..+....++-.|+|++|+|. .+|.-.+..+..|-.||+++|++
T Consensus        86 R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   86 RDNNLKNSGIPTD-IFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             hccccccCCCCch-hcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence            6665542 34444 455666666666666665 45666666666666666666665 23333334455555556666665


Q ss_pred             CCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccC-CCCCcchhccCCCCcceeecc
Q 046844          429 EGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQIS-GEVPNWIWEVGSGNLKFLNLS  507 (967)
Q Consensus       429 ~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~L~~L~Ls  507 (967)
                      . .+|+.+ ..+..|++|.|++|.+....+.     .   +..+++|+.|.+++.+=+ ..+|..+..+  .+|..+|+|
T Consensus       163 e-~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLr-----Q---LPsmtsL~vLhms~TqRTl~N~Ptsld~l--~NL~dvDlS  230 (1255)
T KOG0444|consen  163 E-MLPPQI-RRLSMLQTLKLSNNPLNHFQLR-----Q---LPSMTSLSVLHMSNTQRTLDNIPTSLDDL--HNLRDVDLS  230 (1255)
T ss_pred             h-hcCHHH-HHHhhhhhhhcCCChhhHHHHh-----c---CccchhhhhhhcccccchhhcCCCchhhh--hhhhhcccc
Confidence            5 666666 6777777888888776644332     1   344556777777765433 3455554433  346666666


Q ss_pred             cccccCcCCCC-CCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCCh
Q 046844          508 HNLVVSLQEPY-SISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPE  586 (967)
Q Consensus       508 ~n~l~~l~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~  586 (967)
                      +|.+..+|+.. .+++|+.|+||+|+|+                     ++..                           
T Consensus       231 ~N~Lp~vPecly~l~~LrrLNLS~N~it---------------------eL~~---------------------------  262 (1255)
T KOG0444|consen  231 ENNLPIVPECLYKLRNLRRLNLSGNKIT---------------------ELNM---------------------------  262 (1255)
T ss_pred             ccCCCcchHHHhhhhhhheeccCcCcee---------------------eeec---------------------------
Confidence            66666655432 2455555555555444                     2211                           


Q ss_pred             hhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCc-ccCCCCCCCCCCcccEEeCCCCccCCCCcccccC
Q 046844          587 SVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLN-GTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLAN  665 (967)
Q Consensus       587 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~-~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  665 (967)
                      ......+|++|++|.|+++ .+|.+++.++  .|+.|++.+|+++ .-||.. ++.+.+|+++..++|++. ..|+.+..
T Consensus       263 ~~~~W~~lEtLNlSrNQLt-~LP~avcKL~--kL~kLy~n~NkL~FeGiPSG-IGKL~~Levf~aanN~LE-lVPEglcR  337 (1255)
T KOG0444|consen  263 TEGEWENLETLNLSRNQLT-VLPDAVCKLT--KLTKLYANNNKLTFEGIPSG-IGKLIQLEVFHAANNKLE-LVPEGLCR  337 (1255)
T ss_pred             cHHHHhhhhhhccccchhc-cchHHHhhhH--HHHHHHhccCcccccCCccc-hhhhhhhHHHHhhccccc-cCchhhhh
Confidence            1223457888999999998 8898888776  8999999999876 247777 788888999999998888 77888999


Q ss_pred             CCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccc
Q 046844          666 CNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS  704 (967)
Q Consensus       666 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  704 (967)
                      |..|+.|.|+.|++.. .|+.+.-++.|++|+++.|+=-
T Consensus       338 C~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  338 CVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCc
Confidence            9999999999998875 7888888899999999988643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=8.3e-25  Score=222.68  Aligned_cols=222  Identities=23%  Similarity=0.258  Sum_probs=147.2

Q ss_pred             cCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCC
Q 046844          633 TLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRN  712 (967)
Q Consensus       633 ~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~  712 (967)
                      .-|...|..+++|+.|+|++|+|+++-+.+|.+...++.|.|..|+|..+....|.++..|+.|+|.+|+|+...  |..
T Consensus       264 ~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~--~~a  341 (498)
T KOG4237|consen  264 ICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA--PGA  341 (498)
T ss_pred             cChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe--ccc
Confidence            556555888888888888888888888888888888999999999888887888888999999999999998877  888


Q ss_pred             CCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcc-cc----cccccCCCCceeeEEEEEEEcccee-e---ecc-
Q 046844          713 KVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSE-VN----HLGIEMPSNQFYEVRVTVTVKGIEI-K---LLK-  782 (967)
Q Consensus       713 ~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-  782 (967)
                      |..+..|..|.+-.|+|.+.+-..|+..|+......+.. ..    ..++++..-.+...+    ..+.+- .   -.. 
T Consensus       342 F~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~----c~~~ee~~~~~s~~c  417 (498)
T KOG4237|consen  342 FQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFR----CGGPEELGCLTSSPC  417 (498)
T ss_pred             ccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccc----cCCccccCCCCCCCC
Confidence            888899999999999999999888887777654322110 00    001111000000000    000000 0   000 


Q ss_pred             --cCCcc-eEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCC
Q 046844          783 --VPNIF-TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFL  859 (967)
Q Consensus       783 --~~~~l-~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L  859 (967)
                        ..+-+ +...-|++.+. .+|..+-  ..-..|+|.+|.++ .+|.+  .+++| .+|+|+|+++-.--..|++|+.|
T Consensus       418 P~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql  490 (498)
T KOG4237|consen  418 PPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQL  490 (498)
T ss_pred             CCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhh
Confidence              01112 12223444333 4443332  13456778888887 67776  66777 88888888887777778888888


Q ss_pred             CeEEccCC
Q 046844          860 SVLNLSYN  867 (967)
Q Consensus       860 ~~l~ls~N  867 (967)
                      .+|-+|||
T Consensus       491 ~tlilsyn  498 (498)
T KOG4237|consen  491 STLILSYN  498 (498)
T ss_pred             heeEEecC
Confidence            88888876

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=2.1e-22  Score=234.71  Aligned_cols=174  Identities=24%  Similarity=0.327  Sum_probs=82.5

Q ss_pred             ccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcC
Q 046844          475 LSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNF  554 (967)
Q Consensus       475 L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l  554 (967)
                      -..|+++++.++ .+|..+.    ++++.|++++|+++.+|..  +++|++|++++|+++.. |..+++++.|++++|.+
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~----~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPL  274 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh----cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcc-cCcccccceeeccCCch
Confidence            445566666665 4454432    2455566666655555432  34555555555555532 33334445555555544


Q ss_pred             CCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccC
Q 046844          555 TSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTL  634 (967)
Q Consensus       555 ~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~i  634 (967)
                      +.+|..                              ..+|+.|++++|+++ .+|..     .++|+.|++++|+++ .+
T Consensus       275 ~~Lp~l------------------------------p~~L~~L~Ls~N~Lt-~LP~~-----p~~L~~LdLS~N~L~-~L  317 (788)
T PRK15387        275 THLPAL------------------------------PSGLCKLWIFGNQLT-SLPVL-----PPGLQELSVSDNQLA-SL  317 (788)
T ss_pred             hhhhhc------------------------------hhhcCEEECcCCccc-ccccc-----ccccceeECCCCccc-cC
Confidence            443320                              123445555555555 34431     115555555555555 34


Q ss_pred             CCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccce
Q 046844          635 SDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSG  705 (967)
Q Consensus       635 p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  705 (967)
                      |.. .   .+|+.|++++|++++ +|..   ..+|+.|+|++|+|++ +|..   .++|+.|++++|++++
T Consensus       318 p~l-p---~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~  376 (788)
T PRK15387        318 PAL-P---SELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS  376 (788)
T ss_pred             CCC-c---ccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc
Confidence            432 1   235555555555553 2321   1345555555555554 2221   2344455555555543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=3.5e-22  Score=232.82  Aligned_cols=263  Identities=27%  Similarity=0.314  Sum_probs=194.0

Q ss_pred             CcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCc
Q 046844          500 NLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNS  579 (967)
Q Consensus       500 ~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~  579 (967)
                      .-..|++++|.++.+|.... ++++.|++.+|+++. +|..+++|++|++++|+++.+|.                    
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~LtsLP~--------------------  259 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPV--------------------  259 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCcccC--------------------
Confidence            34566666666666655332 356666666666654 33344555555555555554432                    


Q ss_pred             ccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCC
Q 046844          580 LAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVV  659 (967)
Q Consensus       580 l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~  659 (967)
                             .   .++|+.|++++|.++ .+|...     .+|+.|++++|+++ .+|..    .++|+.|++++|++++. 
T Consensus       260 -------l---p~sL~~L~Ls~N~L~-~Lp~lp-----~~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~~L-  317 (788)
T PRK15387        260 -------L---PPGLLELSIFSNPLT-HLPALP-----SGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLASL-  317 (788)
T ss_pred             -------c---ccccceeeccCCchh-hhhhch-----hhcCEEECcCCccc-ccccc----ccccceeECCCCccccC-
Confidence                   1   257889999999987 566532     27999999999998 67753    36899999999999964 


Q ss_pred             cccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHH
Q 046844          660 PKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLL  739 (967)
Q Consensus       660 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~  739 (967)
                      |..   ..+|+.|++++|++++ +|..   ..+|+.|+|++|+|++.   |..   .++|+.|++++|++++ +|.    
T Consensus       318 p~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~L---P~l---p~~L~~L~Ls~N~L~~-LP~----  379 (788)
T PRK15387        318 PAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASL---PTL---PSELYKLWAYNNRLTS-LPA----  379 (788)
T ss_pred             CCC---cccccccccccCcccc-cccc---ccccceEecCCCccCCC---CCC---Ccccceehhhcccccc-Ccc----
Confidence            432   2468889999999987 4532   25899999999999975   432   2567889999999874 441    


Q ss_pred             HHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCC
Q 046844          740 TMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHN  819 (967)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N  819 (967)
                                                                 .+..|+.|++++|+|++ +|...   +.|+.|++|+|
T Consensus       380 -------------------------------------------l~~~L~~LdLs~N~Lt~-LP~l~---s~L~~LdLS~N  412 (788)
T PRK15387        380 -------------------------------------------LPSGLKELIVSGNRLTS-LPVLP---SELKELMVSGN  412 (788)
T ss_pred             -------------------------------------------cccccceEEecCCcccC-CCCcc---cCCCEEEccCC
Confidence                                                       12357889999999995 66543   57999999999


Q ss_pred             CCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC
Q 046844          820 ALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS  876 (967)
Q Consensus       820 ~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~  876 (967)
                      +|++ +|...   .+|+.|++++|+|+ .+|..+.+++.|+.+++++|+|+|.+|..
T Consensus       413 ~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        413 RLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             cCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence            9995 78653   46788999999998 78999999999999999999999998864

>PLN03210 Resistant to P

Probab=99.86  E-value=2.4e-20  Score=235.74  Aligned_cols=334  Identities=21%  Similarity=0.265  Sum_probs=241.4

Q ss_pred             CcEEEEECCCCCccc-ccCCCCCCcCCCCCCeeeCCCCCCCC-----CCCCccccCCC-CCCEEeCCCCCCCccCChhcc
Q 046844           41 GHVIGLDLSWEPIIG-GLENATGLFDLQYLQSLNLGFTLFKG-----FQIPSRLGNLT-NLTYLNLSQGGFAGEIPTEIS  113 (967)
Q Consensus        41 ~~v~~L~L~~~~l~g-~~~~~~~l~~l~~L~~L~Ls~n~~~~-----~~lp~~l~~l~-~L~~L~Ls~~~~~~~lp~~l~  113 (967)
                      .+|+.+.+.-..+.. .+ ...++..+++|++|.+..+....     ..+|..+..++ +|+.|++.++.+. .+|..+ 
T Consensus       532 ~~v~~i~l~~~~~~~~~i-~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-  608 (1153)
T PLN03210        532 KKVLGITLDIDEIDELHI-HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-  608 (1153)
T ss_pred             ceeeEEEeccCccceeee-cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-
Confidence            355555544333321 12 13467889999999997653221     13677777664 6999999998877 888877 


Q ss_pred             CCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCcc-CCCcchhHHHHhcCCCCccEEEccCCCCCCCCc
Q 046844          114 SLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVD-LSASGTEWCKALSFLPNLQVLSLSGCDLSGPIN  192 (967)
Q Consensus       114 ~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~  192 (967)
                      ...+|++|+++++.         +..++..+..+++|+.|+++++. +...     ..+..+++|++|++++|.....+|
T Consensus       609 ~~~~L~~L~L~~s~---------l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i-----p~ls~l~~Le~L~L~~c~~L~~lp  674 (1153)
T PLN03210        609 RPENLVKLQMQGSK---------LEKLWDGVHSLTGLRNIDLRGSKNLKEI-----PDLSMATNLETLKLSDCSSLVELP  674 (1153)
T ss_pred             CccCCcEEECcCcc---------ccccccccccCCCCCEEECCCCCCcCcC-----CccccCCcccEEEecCCCCccccc
Confidence            57899999999853         33445557789999999998764 3322     246778999999999987777788


Q ss_pred             ccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCC
Q 046844          193 HYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSS  272 (967)
Q Consensus       193 ~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  272 (967)
                      ..+..+++|+.|++++|.....+|..+ ++++|++|++++|...+.+|..   .++|++|++++|.+..  +|....+++
T Consensus       675 ~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~--lP~~~~l~~  748 (1153)
T PLN03210        675 SSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE--FPSNLRLEN  748 (1153)
T ss_pred             hhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc--ccccccccc
Confidence            889999999999999887767777655 7889999999998766566643   4678899999887643  344345778


Q ss_pred             CCEEEccCCCCC-------CCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCccc
Q 046844          273 LRDLILSHTGLS-------GTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLN  345 (967)
Q Consensus       273 L~~L~L~~n~l~-------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~  345 (967)
                      |++|.+.++...       ...+......++|+.|++++|.....+|..++++++|+.|++++|...+.+|....+.+|+
T Consensus       749 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~  828 (1153)
T PLN03210        749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLE  828 (1153)
T ss_pred             cccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccC
Confidence            888888764322       1112223345788999999988777888888899999999998887666667666666888


Q ss_pred             EEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCc
Q 046844          346 NLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQ  402 (967)
Q Consensus       346 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  402 (967)
                      .|++++|.....+|..    .++|+.|++++|.++ .+|.++..+++|+.|++++|.
T Consensus       829 ~L~Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        829 SLDLSGCSRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN  880 (1153)
T ss_pred             EEECCCCCcccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence            8888888665555432    467888888888887 567788888888888887754

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.85  E-value=5.2e-20  Score=232.73  Aligned_cols=340  Identities=21%  Similarity=0.273  Sum_probs=264.0

Q ss_pred             CChhhhhcccCccEEEcCCCcC------CCCcChhccCCC-CCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCC
Q 046844          358 ISSTFWEQLLNLQIVVLGHNSL------SGSIPRSLFLLP-NLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEG  430 (967)
Q Consensus       358 ~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  430 (967)
                      +....|.++++|+.|.+..+..      ...+|..+..++ +|+.|.+.++.+......+   ...+|+.|++.+|.+. 
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f---~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF---RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC---CccCCcEEECcCcccc-
Confidence            3444478899999998876532      334566676664 6999999998886443332   4578999999999887 


Q ss_pred             CCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccc-
Q 046844          431 PVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN-  509 (967)
Q Consensus       431 ~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n-  509 (967)
                      .++..+ ..+++|+.|+++++...         ..+|.+..+++|+.|++++|.....+|..+...  ++|+.|++++| 
T Consensus       625 ~L~~~~-~~l~~Lk~L~Ls~~~~l---------~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L--~~L~~L~L~~c~  692 (1153)
T PLN03210        625 KLWDGV-HSLTGLRNIDLRGSKNL---------KEIPDLSMATNLETLKLSDCSSLVELPSSIQYL--NKLEDLDMSRCE  692 (1153)
T ss_pred             cccccc-ccCCCCCEEECCCCCCc---------CcCCccccCCcccEEEecCCCCccccchhhhcc--CCCCEEeCCCCC
Confidence            677665 78999999999987532         456667888999999999987767888877654  46999999986 


Q ss_pred             cccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcc-------cc
Q 046844          510 LVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSL-------AG  582 (967)
Q Consensus       510 ~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l-------~~  582 (967)
                      .++.+|....+++|+.|++++|...+.+|....++++|++++|.++.+|..+  .+..+..  |.+.++..       ..
T Consensus       693 ~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~--~l~~L~~--L~l~~~~~~~l~~~~~~  768 (1153)
T PLN03210        693 NLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL--RLENLDE--LILCEMKSEKLWERVQP  768 (1153)
T ss_pred             CcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc--ccccccc--ccccccchhhccccccc
Confidence            5777887777899999999999888888877889999999999999998754  2344444  55554321       11


Q ss_pred             cCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCccc
Q 046844          583 VIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKS  662 (967)
Q Consensus       583 ~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~  662 (967)
                      ..+......++|+.|++++|...+.+|..+..+.  +|+.|++++|...+.+|.. . .+++|+.|++++|.....+|..
T Consensus       769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~--~L~~L~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p~~  844 (1153)
T PLN03210        769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH--KLEHLEIENCINLETLPTG-I-NLESLESLDLSGCSRLRTFPDI  844 (1153)
T ss_pred             cchhhhhccccchheeCCCCCCccccChhhhCCC--CCCEEECCCCCCcCeeCCC-C-CccccCEEECCCCCcccccccc
Confidence            2222233457899999999988888999888776  9999999998766688886 3 6899999999998766566653


Q ss_pred             ccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccC-CccceecCCCCCCCCCCCCcEEecCCcc
Q 046844          663 LANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRS-NNFSGHISCPRNKVSWPLLQIVDLACNK  728 (967)
Q Consensus       663 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~p~~~~~l~~L~~Ldls~N~  728 (967)
                         .++|+.|+|++|.++. +|.++..+++|+.|++++ |++.+ +  |..+..+++|+.+++++|.
T Consensus       845 ---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~-l--~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        845 ---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQR-V--SLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCc-c--CcccccccCCCeeecCCCc
Confidence               3689999999999986 788999999999999999 45554 3  7778889999999999885

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=2.9e-23  Score=211.53  Aligned_cols=275  Identities=17%  Similarity=0.096  Sum_probs=154.4

Q ss_pred             ccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccC-CCCCCccchhccCCCCCCEEecc
Q 046844          177 LQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSE-CGLQGKFPEKILHVPTLETLDLS  255 (967)
Q Consensus       177 L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~  255 (967)
                      -.++.|..|.|+.+.+..|..+++|+.|||++|.++.+.|.+|.++++|.+|-+.+ |+|+......|+++..|+.|.+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            44455555555555555555555555555555555555555555555555444433 55554444455555555555555


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCC------------CCCCccccCCCCCcE
Q 046844          256 INQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFT------------GPIPPSMANLTQLFH  323 (967)
Q Consensus       256 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~------------~~~~~~l~~l~~L~~  323 (967)
                      -|++.......|..++++..|.+.+|.+...-...|..+..++.+.+..|.+.            ...|..++...-..-
T Consensus       149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p  228 (498)
T KOG4237|consen  149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP  228 (498)
T ss_pred             hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence            55544444444444555555555555544222224555555555555544421            011111222222222


Q ss_pred             EEccCccccccCccccccCcccEE---ECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcC
Q 046844          324 MDFSSNHFFGPIPSLHKSRNLNNL---DLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSN  400 (967)
Q Consensus       324 L~L~~n~l~~~~~~~~~~~~L~~L---~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  400 (967)
                      ..+.+.++...-+.-+.. .++.+   -.+.+...+..|...|..+++|++|++++|++++.-+.+|.....+++|.|..
T Consensus       229 ~rl~~~Ri~q~~a~kf~c-~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  229 YRLYYKRINQEDARKFLC-SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             HHHHHHHhcccchhhhhh-hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence            222222222111111111 22222   22344455677888888999999999999999988888999999999999999


Q ss_pred             CcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCccc
Q 046844          401 NQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFS  454 (967)
Q Consensus       401 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~  454 (967)
                      |++. .+....+..+..|+.|++.+|+|+ .+....|..+.+|.+|.+-.|.+.
T Consensus       308 N~l~-~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  308 NKLE-FVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             chHH-HHHHHhhhccccceeeeecCCeeE-EEecccccccceeeeeehccCccc
Confidence            9886 344445556777888888888887 444455677777888877777653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=5.8e-20  Score=216.20  Aligned_cols=118  Identities=27%  Similarity=0.456  Sum_probs=53.6

Q ss_pred             CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844          593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL  672 (967)
Q Consensus       593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  672 (967)
                      +|+.|++++|++. .+|..+.  .  +|+.|++++|+++ .+|.. +.  .+|+.|++++|++++ +|..+.  ++|+.|
T Consensus       242 ~L~~L~Ls~N~L~-~LP~~l~--s--~L~~L~Ls~N~L~-~LP~~-l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L  309 (754)
T PRK15370        242 TIQEMELSINRIT-ELPERLP--S--ALQSLDLFHNKIS-CLPEN-LP--EELRYLSVYDNSIRT-LPAHLP--SGITHL  309 (754)
T ss_pred             cccEEECcCCccC-cCChhHh--C--CCCEEECcCCccC-ccccc-cC--CCCcEEECCCCcccc-Ccccch--hhHHHH
Confidence            4555555555554 4444432  1  4555555555555 44544 21  245555555555553 232221  245555


Q ss_pred             ECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCc
Q 046844          673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFS  730 (967)
Q Consensus       673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~  730 (967)
                      ++++|+++. +|..+  .++|+.|++++|.+++.   |..+.  ++|+.|++++|+++
T Consensus       310 ~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~L---P~~l~--~sL~~L~Ls~N~L~  359 (754)
T PRK15370        310 NVQSNSLTA-LPETL--PPGLKTLEAGENALTSL---PASLP--PELQVLDVSKNQIT  359 (754)
T ss_pred             HhcCCcccc-CCccc--cccceeccccCCccccC---Chhhc--CcccEEECCCCCCC
Confidence            555555543 22222  13455555555554432   32221  34444444444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=5.4e-20  Score=216.47  Aligned_cols=202  Identities=26%  Similarity=0.371  Sum_probs=117.4

Q ss_pred             CccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCc
Q 046844          474 QLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNN  553 (967)
Q Consensus       474 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~  553 (967)
                      +...|++++++++ .+|..+.    +.++.|++++|+++.+|... .++|+.|++++|+++......+..++.|++++|.
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip----~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~  252 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP----EQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATLPDTIQEMELSINR  252 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc----cCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhhhccccEEECcCCc
Confidence            4567777777776 4554432    34677777777776665433 2466666666666654332233455555555555


Q ss_pred             CCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCccc
Q 046844          554 FTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGT  633 (967)
Q Consensus       554 l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~  633 (967)
                      ++.+|.                           .+.  ++|+.|++++|+++ .+|..+.  .  +|+.|++++|+++ .
T Consensus       253 L~~LP~---------------------------~l~--s~L~~L~Ls~N~L~-~LP~~l~--~--sL~~L~Ls~N~Lt-~  297 (754)
T PRK15370        253 ITELPE---------------------------RLP--SALQSLDLFHNKIS-CLPENLP--E--ELRYLSVYDNSIR-T  297 (754)
T ss_pred             cCcCCh---------------------------hHh--CCCCEEECcCCccC-ccccccC--C--CCcEEECCCCccc-c
Confidence            555543                           332  35666666666666 4555442  1  6667777777666 4


Q ss_pred             CCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCC
Q 046844          634 LSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNK  713 (967)
Q Consensus       634 ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~  713 (967)
                      +|.. +.  .+|+.|++++|+++. +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+|+..   |..+
T Consensus       298 LP~~-lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~L---P~~l  365 (754)
T PRK15370        298 LPAH-LP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVL---PETL  365 (754)
T ss_pred             Cccc-ch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcC---Chhh
Confidence            5544 22  356667777777664 34333  2466777777777665 444442  5677777777776632   4433


Q ss_pred             CCCCCCcEEecCCccCc
Q 046844          714 VSWPLLQIVDLACNKFS  730 (967)
Q Consensus       714 ~~l~~L~~Ldls~N~l~  730 (967)
                      .  +.|+.|++++|+++
T Consensus       366 p--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        366 P--PTITTLDVSRNALT  380 (754)
T ss_pred             c--CCcCEEECCCCcCC
Confidence            2  46777777777766

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=2.1e-17  Score=181.94  Aligned_cols=185  Identities=24%  Similarity=0.181  Sum_probs=72.8

Q ss_pred             eeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCcc----CChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCC
Q 046844           72 LNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGE----IPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNL  147 (967)
Q Consensus        72 L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~----lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l  147 (967)
                      |+|..+.+++...+..+..+.+|++|+++++.+++.    ++..+...+.|++|+++++..-.  .......++..+.++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~l~~~   80 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR--IPRGLQSLLQGLTKG   80 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC--cchHHHHHHHHHHhc
Confidence            344444444333334444444455555555544321    33333444445555554431110  001112222334444


Q ss_pred             CCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCC----CcccccCC-CCCCEEEccCCCCCCc----chhh
Q 046844          148 TELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGP----INHYLAKS-RSLSVIRLHYNYGLSS----GTEF  218 (967)
Q Consensus       148 ~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~----~~~~l~~l-~~L~~L~L~~n~~~~~----~~~~  218 (967)
                      ++|++|+++++.+..........+...++|++|++++|.+++.    +...+..+ ++|+.|++++|.+.+.    ++..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            4555555544444322222222211113355555555544421    11223333 4444444444444421    1223


Q ss_pred             hcCCCCCCEEeccCCCCCCc----cchhccCCCCCCEEeccCCC
Q 046844          219 LAHLTNLKALDLSECGLQGK----FPEKILHVPTLETLDLSINQ  258 (967)
Q Consensus       219 l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~  258 (967)
                      +..+++|++|++++|.+++.    ++..+..+++|++|++++|.
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  204 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG  204 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence            34444555555555554421    12223333444555544444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=1.2e-17  Score=183.83  Aligned_cols=257  Identities=26%  Similarity=0.261  Sum_probs=166.6

Q ss_pred             EEECCCCCccc-ccCCCCCCcCCCCCCeeeCCCCCCCCC---CCCccccCCCCCCEEeCCCCCCC------ccCChhccC
Q 046844           45 GLDLSWEPIIG-GLENATGLFDLQYLQSLNLGFTLFKGF---QIPSRLGNLTNLTYLNLSQGGFA------GEIPTEISS  114 (967)
Q Consensus        45 ~L~L~~~~l~g-~~~~~~~l~~l~~L~~L~Ls~n~~~~~---~lp~~l~~l~~L~~L~Ls~~~~~------~~lp~~l~~  114 (967)
                      .|+|..+.+.+ .+  ...+..+.+|++|+++++.+.+.   .++..+...++|++|+++++.+.      ..++..+.+
T Consensus         2 ~l~L~~~~l~~~~~--~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~   79 (319)
T cd00116           2 QLSLKGELLKTERA--TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK   79 (319)
T ss_pred             ccccccCcccccch--HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence            35666666653 22  33455677788999988887532   25566777788899998888766      224456677


Q ss_pred             CCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhH-HHHhcCC-CCccEEEccCCCCCCC--
Q 046844          115 LTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEW-CKALSFL-PNLQVLSLSGCDLSGP--  190 (967)
Q Consensus       115 l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~-~~~l~~l-~~L~~L~Ls~~~l~~~--  190 (967)
                      +++|++|++++|....    .....+...... ++|++|+++++.+...+..+ ...+..+ ++|++|++++|.+++.  
T Consensus        80 ~~~L~~L~l~~~~~~~----~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          80 GCGLQELDLSDNALGP----DGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             cCceeEEEccCCCCCh----hHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            8899999998864321    111112222333 55999999998887543333 3456677 8999999999998853  


Q ss_pred             --CcccccCCCCCCEEEccCCCCCCc----chhhhcCCCCCCEEeccCCCCCCc----cchhccCCCCCCEEeccCCCCC
Q 046844          191 --INHYLAKSRSLSVIRLHYNYGLSS----GTEFLAHLTNLKALDLSECGLQGK----FPEKILHVPTLETLDLSINQLL  260 (967)
Q Consensus       191 --~~~~l~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~  260 (967)
                        ++..+..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+.+.    +...+..+++|++|++++|.+.
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence              334566778899999999988753    334456677999999999988744    3345567788888888888764


Q ss_pred             CCCCCCCC-----CCCCCCEEEccCCCCCC----CccccccCCCCCCEEEccCCCCC
Q 046844          261 QGSLPNFP-----KNSSLRDLILSHTGLSG----TLPDSIGNLENLTRVEVSSCNFT  308 (967)
Q Consensus       261 ~~~~~~~~-----~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~  308 (967)
                      ...+..+.     ..+.|++|++++|.++.    .+...+..+++|+++++++|.+.
T Consensus       235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            32222211     13566666666666652    12233444556666666666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=99.66  E-value=3.5e-16  Score=184.35  Aligned_cols=118  Identities=32%  Similarity=0.602  Sum_probs=105.7

Q ss_pred             cceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEcc
Q 046844          786 IFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLS  865 (967)
Q Consensus       786 ~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls  865 (967)
                      .++.|+|++|.++|.+|.+++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..++++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCCCCc--CCccCCCccCCCCCCCCCCCCCCCC
Q 046844          866 YNNLVGKIPTSTQ--LQSFSPTSYEGNKGLYGPPLTNESQ  903 (967)
Q Consensus       866 ~N~l~g~ip~~~~--~~~~~~~~~~gn~~lcg~~~~~~c~  903 (967)
                      +|+++|.+|....  ........+.||+++||.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999997532  1223345688999999977555664

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=3.8e-18  Score=154.30  Aligned_cols=181  Identities=29%  Similarity=0.519  Sum_probs=137.2

Q ss_pred             CCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcE
Q 046844          642 DCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQI  721 (967)
Q Consensus       642 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~  721 (967)
                      +.....|.|++|+++ .+|..++.+.+|++|++.+|+|.. .|..++.++.|+.|+++-|++.-.   |..++.+|.|++
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~~l---prgfgs~p~lev  106 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLNIL---PRGFGSFPALEV  106 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhhcC---ccccCCCchhhh
Confidence            445566666666666 445566777777777777777765 566777788888888888877644   888888888888


Q ss_pred             EecCCccCcC-cCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCC
Q 046844          722 VDLACNKFSG-RLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGP  800 (967)
Q Consensus       722 Ldls~N~l~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~  800 (967)
                      |||++|+++. .+|..+|                                            .+..++.++|+.|.|. .
T Consensus       107 ldltynnl~e~~lpgnff--------------------------------------------~m~tlralyl~dndfe-~  141 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFF--------------------------------------------YMTTLRALYLGDNDFE-I  141 (264)
T ss_pred             hhccccccccccCCcchh--------------------------------------------HHHHHHHHHhcCCCcc-c
Confidence            8888888864 3443332                                            2345677888999986 7


Q ss_pred             CcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCC---CeEEccCCccccCCC
Q 046844          801 IPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFL---SVLNLSYNNLVGKIP  874 (967)
Q Consensus       801 ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L---~~l~ls~N~l~g~ip  874 (967)
                      +|..+|++++|+.|-+..|.+- ..|..+|.++.|+.|.+.+|+++ .+|..++++.-+   +++.+.+|....+|-
T Consensus       142 lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  142 LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA  216 (264)
T ss_pred             CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence            8888999999999999999987 78999999999999999999998 567777776533   456666777755554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=2.2e-17  Score=149.37  Aligned_cols=186  Identities=28%  Similarity=0.454  Sum_probs=138.1

Q ss_pred             hcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCC
Q 046844          589 CKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM  668 (967)
Q Consensus       589 ~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  668 (967)
                      .++..++.|.+|+|+++ .+|..+....  +|+.|++++|++. .+|.. ++.++.|+.|+++-|++. ..|..|+.++.
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~--nlevln~~nnqie-~lp~~-issl~klr~lnvgmnrl~-~lprgfgs~p~  103 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELK--NLEVLNLSNNQIE-ELPTS-ISSLPKLRILNVGMNRLN-ILPRGFGSFPA  103 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhh--hhhhhhcccchhh-hcChh-hhhchhhhheecchhhhh-cCccccCCCch
Confidence            34567777888888887 6777777766  8888888888887 77777 777888888888888887 67888888888


Q ss_pred             CCEEECCCCcccc-ccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccC
Q 046844          669 LQVLDLRSNYISD-NFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETK  747 (967)
Q Consensus       669 L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~  747 (967)
                      |++|||.+|.+.. ..|..|..++.|+.|+|++|.|.-.   |..++++++|++|.+..|.+                  
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~l---p~dvg~lt~lqil~lrdndl------------------  162 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL---PPDVGKLTNLQILSLRDNDL------------------  162 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccC---ChhhhhhcceeEEeeccCch------------------
Confidence            8888888887764 4566677777777777777777533   66677777777776666654                  


Q ss_pred             CCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCc
Q 046844          748 SGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPS  827 (967)
Q Consensus       748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~  827 (967)
                                                                        - ..|.++|.+..|+.|.+.+|+++ .+|.
T Consensus       163 --------------------------------------------------l-~lpkeig~lt~lrelhiqgnrl~-vlpp  190 (264)
T KOG0617|consen  163 --------------------------------------------------L-SLPKEIGDLTRLRELHIQGNRLT-VLPP  190 (264)
T ss_pred             --------------------------------------------------h-hCcHHHHHHHHHHHHhcccceee-ecCh
Confidence                                                              2 57888999999999999999998 6777


Q ss_pred             cccCCCCC---CeEeCcCccccccCCccc
Q 046844          828 SFGNLKEI---ESLDLSMNNLSGKIPAQL  853 (967)
Q Consensus       828 ~~~~l~~L---~~LdLs~N~l~g~ip~~l  853 (967)
                      .++++.-+   +.+.+.+|-....|.+.+
T Consensus       191 el~~l~l~~~k~v~r~E~NPwv~pIaeQf  219 (264)
T KOG0617|consen  191 ELANLDLVGNKQVMRMEENPWVNPIAEQF  219 (264)
T ss_pred             hhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence            77776432   456667777766665554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.27  E-value=2.2e-13  Score=146.30  Aligned_cols=111  Identities=29%  Similarity=0.416  Sum_probs=58.3

Q ss_pred             hhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCC
Q 046844          588 VCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN  667 (967)
Q Consensus       588 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  667 (967)
                      ++.+..|+.+.+..|.+. .+|.++....  .|+.|||+.|+++ .+|.. +.. --|+.|.+++|+++ .+|..++...
T Consensus        94 ~~~f~~Le~liLy~n~~r-~ip~~i~~L~--~lt~l~ls~NqlS-~lp~~-lC~-lpLkvli~sNNkl~-~lp~~ig~~~  166 (722)
T KOG0532|consen   94 ACAFVSLESLILYHNCIR-TIPEAICNLE--ALTFLDLSSNQLS-HLPDG-LCD-LPLKVLIVSNNKLT-SLPEEIGLLP  166 (722)
T ss_pred             HHHHHHHHHHHHHhccce-ecchhhhhhh--HHHHhhhccchhh-cCChh-hhc-CcceeEEEecCccc-cCCcccccch
Confidence            333444444555555554 4555554444  4555555555554 44443 221 23555555555555 4455555556


Q ss_pred             CCCEEECCCCccccccchhhhcCCCCCEEEccCCcccee
Q 046844          668 MLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGH  706 (967)
Q Consensus       668 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  706 (967)
                      .|..||.+.|.+.. +|..++++.+|+.|.++.|++...
T Consensus       167 tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~l  204 (722)
T KOG0532|consen  167 TLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLEDL  204 (722)
T ss_pred             hHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhhC
Confidence            66666666666654 445566666666666666666543

>PLN03150 hypothetical protein; Provisional

Probab=99.20  E-value=2.6e-11  Score=143.27  Aligned_cols=113  Identities=31%  Similarity=0.482  Sum_probs=101.2

Q ss_pred             CCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcc
Q 046844          718 LLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNF  797 (967)
Q Consensus       718 ~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l  797 (967)
                      .++.|+|++|.++|.+|..+.                                            .++.|+.|+|++|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~--------------------------------------------~L~~L~~L~Ls~N~l  454 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDIS--------------------------------------------KLRHLQSINLSGNSI  454 (623)
T ss_pred             EEEEEECCCCCccccCCHHHh--------------------------------------------CCCCCCEEECCCCcc
Confidence            467899999999999997652                                            467799999999999


Q ss_pred             cCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCC-CCCCeEEccCCccccCCC
Q 046844          798 EGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASL-NFLSVLNLSYNNLVGKIP  874 (967)
Q Consensus       798 ~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~l~ls~N~l~g~ip  874 (967)
                      +|.+|..++.++.|+.|||++|+++|.+|+.+++|++|+.|||++|+++|.+|..+..+ ..+..+++++|...+.+|
T Consensus       455 ~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             cCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            99999999999999999999999999999999999999999999999999999998874 467889999998655455

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.19  E-value=3.2e-12  Score=130.06  Aligned_cols=46  Identities=30%  Similarity=0.283  Sum_probs=22.2

Q ss_pred             CCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCc
Q 046844          114 SLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSAS  163 (967)
Q Consensus       114 ~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~  163 (967)
                      .+++|++||||.|-.-.    ..+..+...+.+++.|++|+|.+|.+...
T Consensus        90 ~~~~L~~ldLSDNA~G~----~g~~~l~~ll~s~~~L~eL~L~N~Glg~~  135 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGP----KGIRGLEELLSSCTDLEELYLNNCGLGPE  135 (382)
T ss_pred             cCCceeEeeccccccCc----cchHHHHHHHHhccCHHHHhhhcCCCChh
Confidence            34455555555532111    22333444455566666666666655443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.12  E-value=4.5e-12  Score=136.36  Aligned_cols=174  Identities=30%  Similarity=0.429  Sum_probs=133.7

Q ss_pred             CCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccE
Q 046844          543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEV  622 (967)
Q Consensus       543 ~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~  622 (967)
                      .....|++.|++..+|..+..+ ..++.  +.+..|.+. .+|..++++..|++|||+.|+++ .+|..++.+   -|+.
T Consensus        76 dt~~aDlsrNR~~elp~~~~~f-~~Le~--liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l---pLkv  147 (722)
T KOG0532|consen   76 DTVFADLSRNRFSELPEEACAF-VSLES--LILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL---PLKV  147 (722)
T ss_pred             chhhhhccccccccCchHHHHH-HHHHH--HHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC---ccee
Confidence            3456777888888887766542 23333  556666665 56778888888888888888887 788877776   5888


Q ss_pred             EECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCc
Q 046844          623 LNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNN  702 (967)
Q Consensus       623 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  702 (967)
                      |.+++|+++ .+|.. ++.+..|..||.+.|.+. .+|..++++.+|+.|.++.|++.. .|+.+.. -.|..||++.|+
T Consensus       148 li~sNNkl~-~lp~~-ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNk  222 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEE-IGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNK  222 (722)
T ss_pred             EEEecCccc-cCCcc-cccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCc
Confidence            888888887 78887 677888888888888888 667778888888888888888877 4555553 357888888888


Q ss_pred             cceecCCCCCCCCCCCCcEEecCCccCcCc
Q 046844          703 FSGHISCPRNKVSWPLLQIVDLACNKFSGR  732 (967)
Q Consensus       703 l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~  732 (967)
                      ++..   |-.+..|+.|++|-|.+|+++..
T Consensus       223 is~i---Pv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  223 ISYL---PVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             eeec---chhhhhhhhheeeeeccCCCCCC
Confidence            8755   88888888888888888888643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.11  E-value=8.6e-11  Score=133.13  Aligned_cols=200  Identities=33%  Similarity=0.443  Sum_probs=116.2

Q ss_pred             EEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCC-cccEEeCCCCccCCCCcccccCCCCCCEEEC
Q 046844          596 VLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDC-GLQILDLSGNQLQGVVPKSLANCNMLQVLDL  674 (967)
Q Consensus       596 ~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  674 (967)
                      .++++.|.+...+... ....  .++.|++.+|.++ .||.. ..... +|+.|++++|++. .+|..+..+++|+.|++
T Consensus        97 ~l~~~~~~~~~~~~~~-~~~~--~l~~L~l~~n~i~-~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l  170 (394)
T COG4886          97 SLDLNLNRLRSNISEL-LELT--NLTSLDLDNNNIT-DIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL  170 (394)
T ss_pred             eeeccccccccCchhh-hccc--ceeEEecCCcccc-cCccc-cccchhhcccccccccchh-hhhhhhhcccccccccc
Confidence            5666666664333222 2222  6777777777777 56654 33342 7777777777777 34455677777888888


Q ss_pred             CCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccccc
Q 046844          675 RSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNH  754 (967)
Q Consensus       675 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~  754 (967)
                      ++|+++.. |...+..++|+.|++++|+++..   |........|+.+++++|+..-.+. .                  
T Consensus       171 ~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~~l---~~~~~~~~~L~~l~~~~N~~~~~~~-~------------------  227 (394)
T COG4886         171 SFNDLSDL-PKLLSNLSNLNNLDLSGNKISDL---PPEIELLSALEELDLSNNSIIELLS-S------------------  227 (394)
T ss_pred             CCchhhhh-hhhhhhhhhhhheeccCCccccC---chhhhhhhhhhhhhhcCCcceecch-h------------------
Confidence            88877763 33334677777777777777654   4444444556666666664211110 0                  


Q ss_pred             ccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCC
Q 046844          755 LGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKE  834 (967)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~  834 (967)
                                                .+.+..+..+.+++|++.. +|..++.+..++.|++++|+++ .++. ++.+..
T Consensus       228 --------------------------~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~  278 (394)
T COG4886         228 --------------------------LSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS-SISS-LGSLTN  278 (394)
T ss_pred             --------------------------hhhcccccccccCCceeee-ccchhccccccceecccccccc-cccc-ccccCc
Confidence                                      0122334444455555542 2455666666666666666666 3333 666666


Q ss_pred             CCeEeCcCccccccCCccc
Q 046844          835 IESLDLSMNNLSGKIPAQL  853 (967)
Q Consensus       835 L~~LdLs~N~l~g~ip~~l  853 (967)
                      ++.||+++|.++..+|...
T Consensus       279 l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         279 LRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             cCEEeccCccccccchhhh
Confidence            6666666666665555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.08  E-value=2.8e-11  Score=123.33  Aligned_cols=243  Identities=23%  Similarity=0.263  Sum_probs=154.7

Q ss_pred             CcEEEEECCCCCcccc----cCCCCCCcCCCCCCeeeCCCCCCCCC---CCCcc-------ccCCCCCCEEeCCCCCCCc
Q 046844           41 GHVIGLDLSWEPIIGG----LENATGLFDLQYLQSLNLGFTLFKGF---QIPSR-------LGNLTNLTYLNLSQGGFAG  106 (967)
Q Consensus        41 ~~v~~L~L~~~~l~g~----~~~~~~l~~l~~L~~L~Ls~n~~~~~---~lp~~-------l~~l~~L~~L~Ls~~~~~~  106 (967)
                      ..+++++|+++.+...    +  ...+.+.+.|+..++|.- ++|.   ++|+.       +-.+++|++||||+|.|.-
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i--~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAI--AKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             CceEEEeccCCchhHHHHHHH--HHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            5799999999987522    3  345678889999999864 2221   35543       4467899999999999876


Q ss_pred             cCChh----ccCCCCCCEEeCCCCCCCcccccccccc------HHHHhcCCCCCCEEEcCCccCCCcc-hhHHHHhcCCC
Q 046844          107 EIPTE----ISSLTRLVTLDLSGIVPIEYSYTVWIAN------LSLFLQNLTELTELHLDRVDLSASG-TEWCKALSFLP  175 (967)
Q Consensus       107 ~lp~~----l~~l~~L~~L~Ls~~~~l~~~~~~~~~~------l~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~l~  175 (967)
                      ..+..    +..+..|++|.|.+|- +.......+..      ....+..-++||.+...+|++.+.+ ..+...+...+
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            65543    4678999999999863 32111111111      2233556678999999998887654 44566677788


Q ss_pred             CccEEEccCCCCCCC----CcccccCCCCCCEEEccCCCCCCcc----hhhhcCCCCCCEEeccCCCCCCccchhc----
Q 046844          176 NLQVLSLSGCDLSGP----INHYLAKSRSLSVIRLHYNYGLSSG----TEFLAHLTNLKALDLSECGLQGKFPEKI----  243 (967)
Q Consensus       176 ~L~~L~Ls~~~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~l----  243 (967)
                      .|+.+.++.|.|...    ....+..+++|++|||..|.++...    ...+..+++|++|++++|.+...-..+|    
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            999999988877643    2245667777777777777766443    3344566677777777776654322222    


Q ss_pred             c-CCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCC
Q 046844          244 L-HVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNF  307 (967)
Q Consensus       244 ~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  307 (967)
                      . ..|.|++|.+.+|.++.....                    .+..++...+.|+.|+|++|.+
T Consensus       266 ~~~~p~L~vl~l~gNeIt~da~~--------------------~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEITRDAAL--------------------ALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hccCCCCceeccCcchhHHHHHH--------------------HHHHHHhcchhhHHhcCCcccc
Confidence            1 245555555555544322111                    1222344566777777777766

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.04  E-value=2.4e-10  Score=129.49  Aligned_cols=188  Identities=30%  Similarity=0.354  Sum_probs=144.1

Q ss_pred             hcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCC
Q 046844          589 CKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM  668 (967)
Q Consensus       589 ~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  668 (967)
                      ...+.++.|++.+|.++ .+|....... ++|+.|++++|++. .+|.. ...+++|+.|++++|+++ .+|.....++.
T Consensus       113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~-~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~  187 (394)
T COG4886         113 LELTNLTSLDLDNNNIT-DIPPLIGLLK-SNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLSFNDLS-DLPKLLSNLSN  187 (394)
T ss_pred             hcccceeEEecCCcccc-cCccccccch-hhcccccccccchh-hhhhh-hhccccccccccCCchhh-hhhhhhhhhhh
Confidence            34477899999999998 6666554430 17999999999998 67544 778899999999999999 44555557889


Q ss_pred             CCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCC
Q 046844          669 LQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKS  748 (967)
Q Consensus       669 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~  748 (967)
                      |+.|++++|+++. +|........|++|.+++|++...   +..+..+..+..+.+++|++... +              
T Consensus       188 L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~~~~~-~--------------  248 (394)
T COG4886         188 LNNLDLSGNKISD-LPPEIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNNKLEDL-P--------------  248 (394)
T ss_pred             hhheeccCCcccc-CchhhhhhhhhhhhhhcCCcceec---chhhhhcccccccccCCceeeec-c--------------
Confidence            9999999999987 455555667799999999964322   66778888888888888887532 1              


Q ss_pred             CcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCcc
Q 046844          749 GSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSS  828 (967)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~  828 (967)
                                                    .....+..++.|++++|.++..- . ++.+..++.|++++|.++..+|..
T Consensus       249 ------------------------------~~~~~l~~l~~L~~s~n~i~~i~-~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         249 ------------------------------ESIGNLSNLETLDLSNNQISSIS-S-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ------------------------------chhccccccceeccccccccccc-c-ccccCccCEEeccCccccccchhh
Confidence                                          01124566899999999998544 3 999999999999999999887776


Q ss_pred             ccCC
Q 046844          829 FGNL  832 (967)
Q Consensus       829 ~~~l  832 (967)
                      ...-
T Consensus       297 ~~~~  300 (394)
T COG4886         297 ALLL  300 (394)
T ss_pred             hccc
Confidence            5433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.02  E-value=1.9e-10  Score=110.71  Aligned_cols=128  Identities=32%  Similarity=0.334  Sum_probs=43.1

Q ss_pred             cCCCCcEEEcccCcCCCCCCcccc-cCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCC
Q 046844          590 KATNFQVLDLSNNNLSGTIPACLI-TKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM  668 (967)
Q Consensus       590 ~~~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  668 (967)
                      ++..++.|+|++|.|+ .+. .+. .+.  +|+.|+|++|.++ .++.  +..++.|++|++++|+|+...+.....+++
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~--~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~   89 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLD--KLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPN   89 (175)
T ss_dssp             ---------------------S--TT-T--T--EEE-TTS--S---TT------TT--EEE--SS---S-CHHHHHH-TT
T ss_pred             cccccccccccccccc-ccc-chhhhhc--CCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCccccchHHhCCc
Confidence            4456788888888886 343 232 223  7888888888887 5553  677788888888888887543322245778


Q ss_pred             CCEEECCCCccccccc-hhhhcCCCCCEEEccCCccceecCC-CCCCCCCCCCcEEec
Q 046844          669 LQVLDLRSNYISDNFP-CWLRNASSLQVLVLRSNNFSGHISC-PRNKVSWPLLQIVDL  724 (967)
Q Consensus       669 L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~-p~~~~~l~~L~~Ldl  724 (967)
                      |+.|++++|+|..... ..+..+++|++|+|.+|++...... ...+..+|+|+.||-
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            8888888888765322 4566677888888888877643100 112445667777664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=5.1e-11  Score=124.66  Aligned_cols=87  Identities=30%  Similarity=0.363  Sum_probs=38.0

Q ss_pred             CCCCCEEeccCCCCCCccc-hhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCc-cccccCCCCCCE
Q 046844          222 LTNLKALDLSECGLQGKFP-EKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTL-PDSIGNLENLTR  299 (967)
Q Consensus       222 l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~  299 (967)
                      +++|+.|.++.|+++.... .....+|+|+.|+|..|...........-+..|++|+|++|.+...- -...+.++.|+.
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            4455555666665552211 12234555555555555321111112222444555555555443211 123344555555


Q ss_pred             EEccCCCCC
Q 046844          300 VEVSSCNFT  308 (967)
Q Consensus       300 L~Ls~n~l~  308 (967)
                      |+++.+.+.
T Consensus       276 Lnls~tgi~  284 (505)
T KOG3207|consen  276 LNLSSTGIA  284 (505)
T ss_pred             hhccccCcc
Confidence            555555444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=1e-10  Score=122.52  Aligned_cols=162  Identities=23%  Similarity=0.190  Sum_probs=75.9

Q ss_pred             cCCCCccEEEccCCCCCCCCccc-ccCCCCCCEEEccCCCCCCcchhh-hcCCCCCCEEeccCCCCCCccchhccCCCCC
Q 046844          172 SFLPNLQVLSLSGCDLSGPINHY-LAKSRSLSVIRLHYNYGLSSGTEF-LAHLTNLKALDLSECGLQGKFPEKILHVPTL  249 (967)
Q Consensus       172 ~~l~~L~~L~Ls~~~l~~~~~~~-l~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  249 (967)
                      ..+|+|+.|+++.|.+....... -..+++|+.|.++.|.++.....+ ...+++|+.|+|..|...........-+..|
T Consensus       169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L  248 (505)
T KOG3207|consen  169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL  248 (505)
T ss_pred             HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence            44444444444444433321111 113445555555555544322222 2345555555555553222222233344555


Q ss_pred             CEEeccCCCCCCCC-CCCCCCCCCCCEEEccCCCCCCC-cccc-----ccCCCCCCEEEccCCCCCCC-CCccccCCCCC
Q 046844          250 ETLDLSINQLLQGS-LPNFPKNSSLRDLILSHTGLSGT-LPDS-----IGNLENLTRVEVSSCNFTGP-IPPSMANLTQL  321 (967)
Q Consensus       250 ~~L~L~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~-----l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L  321 (967)
                      ++|||++|++...+ .+....++.|+.|+++.+.+... .|+.     ...+++|++|++..|++... .-..+..+++|
T Consensus       249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nl  328 (505)
T KOG3207|consen  249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENL  328 (505)
T ss_pred             hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchh
Confidence            56666655543322 12233455566666665555432 2222     24556777777777766421 11234445666


Q ss_pred             cEEEccCccccc
Q 046844          322 FHMDFSSNHFFG  333 (967)
Q Consensus       322 ~~L~L~~n~l~~  333 (967)
                      +.|.+..|.+..
T Consensus       329 k~l~~~~n~ln~  340 (505)
T KOG3207|consen  329 KHLRITLNYLNK  340 (505)
T ss_pred             hhhhcccccccc
Confidence            666666666543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.97  E-value=1.5e-10  Score=114.92  Aligned_cols=134  Identities=28%  Similarity=0.281  Sum_probs=104.5

Q ss_pred             CCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCC
Q 046844          591 ATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQ  670 (967)
Q Consensus       591 ~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  670 (967)
                      ...|+.+|||+|.|+ .+.++..-.+  .++.|++|+|.+. .+..  +..+++|+.|||++|.++. +..+=..+-+.+
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~P--kir~L~lS~N~i~-~v~n--La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAP--KLRRLILSQNRIR-TVQN--LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIK  355 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhcc--ceeEEecccccee-eehh--hhhcccceEeecccchhHh-hhhhHhhhcCEe
Confidence            356888999999987 6666665544  8899999999987 5544  6778899999999999883 344445677889


Q ss_pred             EEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCc
Q 046844          671 VLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLS  734 (967)
Q Consensus       671 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p  734 (967)
                      .|.|++|.|...  ..++++-+|..||+++|+|...-. ...++++|-|+.+.|.+|++.+...
T Consensus       356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCccccch
Confidence            999999988653  346778889999999999875422 4678899999999999999987543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.91  E-value=7.8e-10  Score=133.26  Aligned_cols=180  Identities=24%  Similarity=0.346  Sum_probs=104.6

Q ss_pred             CcEEEEECCCCC--cccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCChhccCCCCC
Q 046844           41 GHVIGLDLSWEP--IIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRL  118 (967)
Q Consensus        41 ~~v~~L~L~~~~--l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L  118 (967)
                      ..++.|=+.++.  +. .+ +...+..+++|++|||++|.-.+ ++|+.++.|-+||||+++++.+. .+|..+++|++|
T Consensus       545 ~~L~tLll~~n~~~l~-~i-s~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLL-EI-SGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CccceEEEeecchhhh-hc-CHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            346666666654  22 22 02235678888888888764333 48888888888888888888888 888888888888


Q ss_pred             CEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCC
Q 046844          119 VTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKS  198 (967)
Q Consensus       119 ~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l  198 (967)
                      .+|++..+..+.        ..+.....|++||+|.+..... ..+......+..+.+|+.+.......  .+...+..+
T Consensus       621 ~~Lnl~~~~~l~--------~~~~i~~~L~~Lr~L~l~~s~~-~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~  689 (889)
T KOG4658|consen  621 IYLNLEVTGRLE--------SIPGILLELQSLRVLRLPRSAL-SNDKLLLKELENLEHLENLSITISSV--LLLEDLLGM  689 (889)
T ss_pred             heeccccccccc--------cccchhhhcccccEEEeecccc-ccchhhHHhhhcccchhhheeecchh--HhHhhhhhh
Confidence            888888753322        2244466688888888766542 22223344555666666666544332  111112222


Q ss_pred             CCCC----EEEccCCCCCCcchhhhcCCCCCCEEeccCCCCC
Q 046844          199 RSLS----VIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQ  236 (967)
Q Consensus       199 ~~L~----~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~  236 (967)
                      +.|.    .+.+.++. ....+..++.+.+|+.|.+.+|.+.
T Consensus       690 ~~L~~~~~~l~~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  690 TRLRSLLQSLSIEGCS-KRTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             HHHHHHhHhhhhcccc-cceeecccccccCcceEEEEcCCCc
Confidence            2222    12221211 1222334556666666666666654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.88  E-value=5.1e-10  Score=111.14  Aligned_cols=204  Identities=22%  Similarity=0.254  Sum_probs=110.3

Q ss_pred             hhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCC-CccCCCCcccccCC
Q 046844          588 VCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG-NQLQGVVPKSLANC  666 (967)
Q Consensus       588 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l  666 (967)
                      +.-..+|+.+.+|.+.-. .|-.....  .+.|+++...+..++ ..|.- .+ ...+..+.-+. .-..|..-......
T Consensus       210 l~~f~~l~~~~~s~~~~~-~i~~~~~~--kptl~t~~v~~s~~~-~~~~l-~p-e~~~~D~~~~E~~t~~G~~~~~~dTW  283 (490)
T KOG1259|consen  210 LNAFRNLKTLKFSALSTE-NIVDIELL--KPTLQTICVHNTTIQ-DVPSL-LP-ETILADPSGSEPSTSNGSALVSADTW  283 (490)
T ss_pred             hHHhhhhheeeeeccchh-heeceeec--Cchhheeeeeccccc-ccccc-cc-hhhhcCccCCCCCccCCceEEecchH
Confidence            344556777777766532 22221111  226777766665554 22221 11 11111111111 11223333333344


Q ss_pred             CCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhccc
Q 046844          667 NMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAET  746 (967)
Q Consensus       667 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~  746 (967)
                      ..|+++|||+|.|+. +.++..-.+.++.|++++|.+...    ..+..+++|+.||||+|.                  
T Consensus       284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v----~nLa~L~~L~~LDLS~N~------------------  340 (490)
T KOG1259|consen  284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV----QNLAELPQLQLLDLSGNL------------------  340 (490)
T ss_pred             hhhhhccccccchhh-hhhhhhhccceeEEeccccceeee----hhhhhcccceEeecccch------------------
Confidence            567777777777765 334455566666666666666532    234444555555555554                  


Q ss_pred             CCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCC
Q 046844          747 KSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIP  826 (967)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip  826 (967)
                                                                        ++.. -..-..+-++++|+|+.|.+..  -
T Consensus       341 --------------------------------------------------Ls~~-~Gwh~KLGNIKtL~La~N~iE~--L  367 (490)
T KOG1259|consen  341 --------------------------------------------------LAEC-VGWHLKLGNIKTLKLAQNKIET--L  367 (490)
T ss_pred             --------------------------------------------------hHhh-hhhHhhhcCEeeeehhhhhHhh--h
Confidence                                                              4321 1122345566778888887752  3


Q ss_pred             ccccCCCCCCeEeCcCccccccC-CccccCCCCCCeEEccCCccccCC
Q 046844          827 SSFGNLKEIESLDLSMNNLSGKI-PAQLASLNFLSVLNLSYNNLVGKI  873 (967)
Q Consensus       827 ~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~l~ls~N~l~g~i  873 (967)
                      +.++.|-+|+.||+++|++...- -..+++++.|+.+.+.+|.++|.+
T Consensus       368 SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  368 SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            45677778888888888876432 246788888888888888887744

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.88  E-value=2.1e-09  Score=103.57  Aligned_cols=108  Identities=31%  Similarity=0.347  Sum_probs=45.3

Q ss_pred             CccEEECCCCcCcccCCCCCCC-CCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEE
Q 046844          619 TLEVLNLGRNNLNGTLSDTIFP-GDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLV  697 (967)
Q Consensus       619 ~L~~L~Ls~N~l~~~ip~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  697 (967)
                      .+++|+|++|.|+ .|..  ++ .+.+|+.|+|++|.|+..  +.+..++.|++|++++|+|+.+.+.....+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~-~Ie~--L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TIEN--LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             -----------------S----TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccc-cccc--hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            7899999999998 6653  44 578999999999999965  3588899999999999999986443335799999999


Q ss_pred             ccCCccceecCCCCCCCCCCCCcEEecCCccCcCc
Q 046844          698 LRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGR  732 (967)
Q Consensus       698 L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~  732 (967)
                      +++|+|...-. -..+..+++|+.|++.+|++...
T Consensus        95 L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   95 LSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             -TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGS
T ss_pred             CcCCcCCChHH-hHHHHcCCCcceeeccCCcccch
Confidence            99999986532 35677899999999999998643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.77  E-value=3.5e-09  Score=127.70  Aligned_cols=228  Identities=26%  Similarity=0.310  Sum_probs=144.6

Q ss_pred             CcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCChhccCCCCCCE
Q 046844           41 GHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVT  120 (967)
Q Consensus        41 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~  120 (967)
                      .+++.|||+++.-.+.+  |.++++|-|||||+|+++.+.  .+|..+++|+.|.+||+..+.....+|..+..|.+||+
T Consensus       571 ~~LrVLDLs~~~~l~~L--P~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~  646 (889)
T KOG4658|consen  571 PLLRVLDLSGNSSLSKL--PSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV  646 (889)
T ss_pred             cceEEEECCCCCccCcC--ChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence            68999999997666677  899999999999999999999  79999999999999999998877677777777999999


Q ss_pred             EeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHHhcCCCCcc----EEEccCCCCCCCCccccc
Q 046844          121 LDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQ----VLSLSGCDLSGPINHYLA  196 (967)
Q Consensus       121 L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~----~L~Ls~~~l~~~~~~~l~  196 (967)
                      |.+.... .     ......-..+.+++.|+.+.......     .....+..++.|+    .+.+.++... ..+..+.
T Consensus       647 L~l~~s~-~-----~~~~~~l~el~~Le~L~~ls~~~~s~-----~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~  714 (889)
T KOG4658|consen  647 LRLPRSA-L-----SNDKLLLKELENLEHLENLSITISSV-----LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLG  714 (889)
T ss_pred             EEeeccc-c-----ccchhhHHhhhcccchhhheeecchh-----HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccc
Confidence            9998632 1     12222333345566666555533321     1222333344444    2332222222 2345677


Q ss_pred             CCCCCCEEEccCCCCCCcchhhhcC------CCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCC
Q 046844          197 KSRSLSVIRLHYNYGLSSGTEFLAH------LTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKN  270 (967)
Q Consensus       197 ~l~~L~~L~L~~n~~~~~~~~~l~~------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l  270 (967)
                      .+.+|+.|.+.++.+......+...      ++++..+...+|... ..+.+....++|+.|.+..+......++....+
T Consensus       715 ~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~  793 (889)
T KOG4658|consen  715 SLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKAL  793 (889)
T ss_pred             cccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHh
Confidence            8889999999888776443333221      222333333333322 223333455778888888777666666655555


Q ss_pred             CCCCEEEccCCCCCC
Q 046844          271 SSLRDLILSHTGLSG  285 (967)
Q Consensus       271 ~~L~~L~L~~n~l~~  285 (967)
                      ..++.+.+..+.+.+
T Consensus       794 ~~l~~~i~~f~~~~~  808 (889)
T KOG4658|consen  794 LELKELILPFNKLEG  808 (889)
T ss_pred             hhcccEEeccccccc
Confidence            555555555444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=5.2e-09  Score=82.71  Aligned_cols=58  Identities=38%  Similarity=0.493  Sum_probs=26.3

Q ss_pred             ccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCc
Q 046844          645 LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNN  702 (967)
Q Consensus       645 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  702 (967)
                      |++|++++|+++...+..|.++++|++|++++|+++.+.|.+|.++++|+.|++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4444444444443333444444444444444444444444444444444444444443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.73  E-value=7.5e-09  Score=81.82  Aligned_cols=60  Identities=35%  Similarity=0.522  Sum_probs=54.2

Q ss_pred             CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCcc
Q 046844          619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYI  679 (967)
Q Consensus       619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  679 (967)
                      +|++|++++|+++ .+|..+|.++++|++|++++|+++...|.+|.++++|+.|++++|+|
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            7889999999998 77877799999999999999999988888999999999999999975

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.70  E-value=2.9e-09  Score=120.65  Aligned_cols=225  Identities=24%  Similarity=0.257  Sum_probs=110.6

Q ss_pred             hhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCC
Q 046844          588 VCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN  667 (967)
Q Consensus       588 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  667 (967)
                      ++.+.+|+.|++.+|++.. +...+..+.  +|++|++++|.|+. +..  +..++.|+.|++++|.|+..  ..+..++
T Consensus        91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~--~L~~L~ls~N~I~~-i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~  162 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK-IENLLSSLV--NLQVLDLSFNKITK-LEG--LSTLTLLKELNLSGNLISDI--SGLESLK  162 (414)
T ss_pred             cccccceeeeeccccchhh-cccchhhhh--cchheecccccccc-ccc--hhhccchhhheeccCcchhc--cCCccch
Confidence            3445555566666665552 222122222  55556666665552 221  33444455555555555532  2334455


Q ss_pred             CCCEEECCCCccccccc-hhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhccc
Q 046844          668 MLQVLDLRSNYISDNFP-CWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAET  746 (967)
Q Consensus       668 ~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~  746 (967)
                      .|+.+++++|+++.+.+ . ...+.+++.+++.+|.+..    ..++..+..+..+++..|.++-.-+            
T Consensus       163 ~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~----i~~~~~~~~l~~~~l~~n~i~~~~~------------  225 (414)
T KOG0531|consen  163 SLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE----IEGLDLLKKLVLLSLLDNKISKLEG------------  225 (414)
T ss_pred             hhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc----ccchHHHHHHHHhhcccccceeccC------------
Confidence            55555555555555433 2 3445555555555555542    1222233333333444444331100            


Q ss_pred             CCCcccccccccCCCCceeeEEEEEEEccceeeecccCC--cceEEECCCCcccCCCcccccCCCCCcEEECCCCCCccc
Q 046844          747 KSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPN--IFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGS  824 (967)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~  824 (967)
                                                   ..     .+.  .++.+++++|++. .+|..+..+..+..|+++.|+++..
T Consensus       226 -----------------------------l~-----~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~  270 (414)
T KOG0531|consen  226 -----------------------------LN-----ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL  270 (414)
T ss_pred             -----------------------------cc-----cchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc
Confidence                                         00     011  2556667777665 3334455666677777777776632


Q ss_pred             CCccccCCCCCCeEeCcCcccccc---CCcc-ccCCCCCCeEEccCCccccCCC
Q 046844          825 IPSSFGNLKEIESLDLSMNNLSGK---IPAQ-LASLNFLSVLNLSYNNLVGKIP  874 (967)
Q Consensus       825 ip~~~~~l~~L~~LdLs~N~l~g~---ip~~-l~~l~~L~~l~ls~N~l~g~ip  874 (967)
                        ..+.....+..+.++.|.+...   .... ......+....+.+|......+
T Consensus       271 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  271 --EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             --ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence              2234455566666666665521   1111 4455666777777776665554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.69  E-value=2.5e-09  Score=121.22  Aligned_cols=218  Identities=27%  Similarity=0.296  Sum_probs=149.4

Q ss_pred             cCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCC
Q 046844          590 KATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML  669 (967)
Q Consensus       590 ~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  669 (967)
                      .+..++.+++..|.+.. +-..+....  +|+.|++.+|+|. .+... +..+.+|++|++++|+|+.+.+  +..++.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~--~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L  142 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLK--SLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLL  142 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhccccccc--ceeeeeccccchh-hcccc-hhhhhcchheeccccccccccc--hhhccch
Confidence            34566666777787763 223333334  8888888888887 55543 5567888888888888886643  5667778


Q ss_pred             CEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCC-CCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCC
Q 046844          670 QVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCP-RNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKS  748 (967)
Q Consensus       670 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p-~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~  748 (967)
                      +.|++++|.|+..  ..+..+++|+.+++++|++...-  + . ...+.+++.+++++|.+.-.-...            
T Consensus       143 ~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie--~~~-~~~~~~l~~l~l~~n~i~~i~~~~------------  205 (414)
T KOG0531|consen  143 KELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIE--NDE-LSELISLEELDLGGNSIREIEGLD------------  205 (414)
T ss_pred             hhheeccCcchhc--cCCccchhhhcccCCcchhhhhh--hhh-hhhccchHHHhccCCchhcccchH------------
Confidence            8888888888764  34555788888888888887543  2 1 466777888888888764221111            


Q ss_pred             CcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCC--CCcEEECCCCCCcccCC
Q 046844          749 GSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFR--SLYALNMSHNALTGSIP  826 (967)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~--~L~~L~Ls~N~l~g~ip  826 (967)
                                                        ....+..+++..|.++-.-+  +..+.  .|+.+++++|++. .+|
T Consensus       206 ----------------------------------~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~  248 (414)
T KOG0531|consen  206 ----------------------------------LLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSP  248 (414)
T ss_pred             ----------------------------------HHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-ccc
Confidence                                              11223334777787764333  22233  3889999999998 566


Q ss_pred             ccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccc
Q 046844          827 SSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV  870 (967)
Q Consensus       827 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~  870 (967)
                      ..+..+..+..||+++|+++..-  .+.....+..+..+.|.+.
T Consensus       249 ~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  249 EGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             ccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence            77888999999999999998653  3455667778888888775

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=1.9e-09  Score=107.31  Aligned_cols=186  Identities=24%  Similarity=0.214  Sum_probs=96.3

Q ss_pred             CCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCC
Q 046844           68 YLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNL  147 (967)
Q Consensus        68 ~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l  147 (967)
                      .|++||||...++...+-..+..|.+|+.|.|.++++.+.+-..+++-.+|+.|+++.|.+++      ...+.-.+.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t------~n~~~ll~~sc  259 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT------ENALQLLLSSC  259 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc------hhHHHHHHHhh
Confidence            366777777666544344456667777777777777776666666777777777777765554      22233335556


Q ss_pred             CCCCEEEcCCccCCCcchhHHHHh-cCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCC
Q 046844          148 TELTELHLDRVDLSASGTEWCKAL-SFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLK  226 (967)
Q Consensus       148 ~~L~~L~l~~~~l~~~~~~~~~~l-~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~  226 (967)
                      +.|.+|++++|.+......  ..+ .--++|+.|+|+++.-.                     -....+..-...+++|.
T Consensus       260 s~L~~LNlsWc~l~~~~Vt--v~V~hise~l~~LNlsG~rrn---------------------l~~sh~~tL~~rcp~l~  316 (419)
T KOG2120|consen  260 SRLDELNLSWCFLFTEKVT--VAVAHISETLTQLNLSGYRRN---------------------LQKSHLSTLVRRCPNLV  316 (419)
T ss_pred             hhHhhcCchHhhccchhhh--HHHhhhchhhhhhhhhhhHhh---------------------hhhhHHHHHHHhCCcee
Confidence            6666666665554322110  001 11234444444444211                     01111222234566666


Q ss_pred             EEeccCCC-CCCccchhccCCCCCCEEeccCCCCCC-CCCCCCCCCCCCCEEEccCCC
Q 046844          227 ALDLSECG-LQGKFPEKILHVPTLETLDLSINQLLQ-GSLPNFPKNSSLRDLILSHTG  282 (967)
Q Consensus       227 ~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~L~~n~  282 (967)
                      +|||++|. ++......|.+++.|++|.++.|.... ...-.+...+.|.+|++.++-
T Consensus       317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            66666653 333334455566666666666664211 111124446667777766543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=9.5e-09  Score=102.43  Aligned_cols=236  Identities=22%  Similarity=0.298  Sum_probs=134.9

Q ss_pred             CcccceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCC--CCCeeeCCCCCCCCCCCCccccCC-CCCCEEeCCCCCCC
Q 046844           29 CCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQ--YLQSLNLGFTLFKGFQIPSRLGNL-TNLTYLNLSQGGFA  105 (967)
Q Consensus        29 ~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~--~L~~L~Ls~n~~~~~~lp~~l~~l-~~L~~L~Ls~~~~~  105 (967)
                      |=+|.|+.-+. .-=+.+|+.+..+.     |..++++.  ...++.+....+....+.+.+.-+ ..|++||||+..++
T Consensus       125 C~Rfyr~~~de-~lW~~lDl~~r~i~-----p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it  198 (419)
T KOG2120|consen  125 CKRFYRLASDE-SLWQTLDLTGRNIH-----PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVIT  198 (419)
T ss_pred             HHHHhhccccc-cceeeeccCCCccC-----hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhhee
Confidence            44698876654 34577888887765     34444432  233444443333322122222111 23556666555444


Q ss_pred             ccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCC
Q 046844          106 GEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGC  185 (967)
Q Consensus       106 ~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~  185 (967)
                      .                               ..+...+..|.+|+.|.+.++.+.+   ..+..+.+-.+|+.|+|+.|
T Consensus       199 ~-------------------------------stl~~iLs~C~kLk~lSlEg~~LdD---~I~~~iAkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  199 V-------------------------------STLHGILSQCSKLKNLSLEGLRLDD---PIVNTIAKNSNLVRLNLSMC  244 (419)
T ss_pred             H-------------------------------HHHHHHHHHHHhhhhccccccccCc---HHHHHHhccccceeeccccc
Confidence            2                               2233334455555555555554432   23455566666666666665


Q ss_pred             C-CCCC-CcccccCCCCCCEEEccCCCCCCcchhh-hcC-CCCCCEEeccCCCCC---CccchhccCCCCCCEEeccCCC
Q 046844          186 D-LSGP-INHYLAKSRSLSVIRLHYNYGLSSGTEF-LAH-LTNLKALDLSECGLQ---GKFPEKILHVPTLETLDLSINQ  258 (967)
Q Consensus       186 ~-l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~-l~~-l~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~L~~n~  258 (967)
                      . ++.. ..-.+.+++.|..|++++|......... +.. -++|+.|+++++.-.   ..+..-...+++|.+|||+.|.
T Consensus       245 sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  245 SGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             cccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence            3 2221 1123456677777777777654433222 111 257888888887422   1222334589999999999985


Q ss_pred             CCC-CCCCCCCCCCCCCEEEccCCCCCCCccc---cccCCCCCCEEEccCCC
Q 046844          259 LLQ-GSLPNFPKNSSLRDLILSHTGLSGTLPD---SIGNLENLTRVEVSSCN  306 (967)
Q Consensus       259 ~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~n~  306 (967)
                      ... +-...|.+++.|++|.++.|..  .+|.   .+...|.|.+|++.++-
T Consensus       325 ~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  325 MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            333 3334577799999999999974  4554   45678999999998763

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.24  E-value=2.6e-07  Score=91.21  Aligned_cols=36  Identities=42%  Similarity=0.580  Sum_probs=16.1

Q ss_pred             CCCCCCEEeCCCCCCCccCChh----ccCCCCCCEEeCCC
Q 046844           90 NLTNLTYLNLSQGGFAGEIPTE----ISSLTRLVTLDLSG  125 (967)
Q Consensus        90 ~l~~L~~L~Ls~~~~~~~lp~~----l~~l~~L~~L~Ls~  125 (967)
                      +|++|+..+||+|.|....|..    |++-+.|+||.+++
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~N  129 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNN  129 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeec
Confidence            4455555555555544444322    23334444444443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.17  E-value=5.6e-08  Score=108.06  Aligned_cols=80  Identities=28%  Similarity=0.271  Sum_probs=43.5

Q ss_pred             cccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCC-CCCCCCCcEE
Q 046844          644 GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRN-KVSWPLLQIV  722 (967)
Q Consensus       644 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~-~~~l~~L~~L  722 (967)
                      .|...+.+.|.+. ....++.-++.|+.|||++|+++...  .+..|+.|+.|||++|++.-.   |.. ...+ .|+.|
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~v---p~l~~~gc-~L~~L  237 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHV---PQLSMVGC-KLQLL  237 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccc---cccchhhh-hheee
Confidence            4555566666665 33445555666666666666665533  455566666666666666533   221 1122 26666


Q ss_pred             ecCCccCc
Q 046844          723 DLACNKFS  730 (967)
Q Consensus       723 dls~N~l~  730 (967)
                      .+++|.++
T Consensus       238 ~lrnN~l~  245 (1096)
T KOG1859|consen  238 NLRNNALT  245 (1096)
T ss_pred             eecccHHH
Confidence            66666553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.16  E-value=1.3e-07  Score=99.04  Aligned_cols=280  Identities=20%  Similarity=0.169  Sum_probs=140.4

Q ss_pred             CCCCeeeCCCCCCCC-CCCCccccCCCCCCEEeCCCCC-CCccCChhc-cCCCCCCEEeCCCCCCCccccccccccHHHH
Q 046844           67 QYLQSLNLGFTLFKG-FQIPSRLGNLTNLTYLNLSQGG-FAGEIPTEI-SSLTRLVTLDLSGIVPIEYSYTVWIANLSLF  143 (967)
Q Consensus        67 ~~L~~L~Ls~n~~~~-~~lp~~l~~l~~L~~L~Ls~~~-~~~~lp~~l-~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~  143 (967)
                      ..|+.|.|.++.-.+ ..+-....+++++++|++.+|. +++..-..+ ..+++|++|++..|..++      ...+...
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT------~~~Lk~l  211 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT------DVSLKYL  211 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH------HHHHHHH
Confidence            456777777764222 2233445567777777777774 232222223 457777777777765444      2223334


Q ss_pred             hcCCCCCCEEEcCCccC-CCcchhHHHHhcCCCCccEEEccCCCCCCC--CcccccCCCCCCEEEccCCCC-CCcch-hh
Q 046844          144 LQNLTELTELHLDRVDL-SASGTEWCKALSFLPNLQVLSLSGCDLSGP--INHYLAKSRSLSVIRLHYNYG-LSSGT-EF  218 (967)
Q Consensus       144 l~~l~~L~~L~l~~~~l-~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~--~~~~l~~l~~L~~L~L~~n~~-~~~~~-~~  218 (967)
                      ...+++|++|+++++.- +..+.  -.-...+..++.+.+.+|.=.+.  +...=+.+..+.++++..+.. ++... ..
T Consensus       212 a~gC~kL~~lNlSwc~qi~~~gv--~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i  289 (483)
T KOG4341|consen  212 AEGCRKLKYLNLSWCPQISGNGV--QALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI  289 (483)
T ss_pred             HHhhhhHHHhhhccCchhhcCcc--hHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence            56677777777777642 22111  11224455566665555431111  001112233344455444422 22111 11


Q ss_pred             hcCCCCCCEEeccCCCCCCc-cchhc-cCCCCCCEEeccCCCCC-CCCCCCCC-CCCCCCEEEccCCCCCC--Ccccccc
Q 046844          219 LAHLTNLKALDLSECGLQGK-FPEKI-LHVPTLETLDLSINQLL-QGSLPNFP-KNSSLRDLILSHTGLSG--TLPDSIG  292 (967)
Q Consensus       219 l~~l~~L~~L~Ls~n~l~~~-~~~~l-~~l~~L~~L~L~~n~~~-~~~~~~~~-~l~~L~~L~L~~n~l~~--~~~~~l~  292 (967)
                      -..+..|+.|+.+++.-.+. .-.++ .+.++|+.|.++.|+.. ......+. .++.|+.+++.++....  .+...-.
T Consensus       290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~  369 (483)
T KOG4341|consen  290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR  369 (483)
T ss_pred             hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence            12456667777666643221 11122 35567777777776532 12222222 26667777776665421  1222234


Q ss_pred             CCCCCCEEEccCCCCCCCC-----CccccCCCCCcEEEccCcccccc--CccccccCcccEEECCCCCC
Q 046844          293 NLENLTRVEVSSCNFTGPI-----PPSMANLTQLFHMDFSSNHFFGP--IPSLHKSRNLNNLDLSFNNL  354 (967)
Q Consensus       293 ~l~~L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~L~~L~L~~n~l  354 (967)
                      +++.|++|.+++|......     ...-..+..|+.+.++++.....  ......+++|+.+++.+++-
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            5677777777776543211     11223456677777777765431  22233445788888877754

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.15  E-value=7.6e-08  Score=85.03  Aligned_cols=89  Identities=20%  Similarity=0.330  Sum_probs=50.7

Q ss_pred             CcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEc
Q 046844          785 NIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNL  864 (967)
Q Consensus       785 ~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~l  864 (967)
                      +.++.++|++|.++ .+|.++..++.|+.||++.|.|. ..|.-|..|.++..||...|.+- +||..+-.-+.....++
T Consensus        77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~l  153 (177)
T KOG4579|consen   77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKL  153 (177)
T ss_pred             chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHh
Confidence            34555666666665 56666666666666676666666 45666666666666666666654 44443322222333344


Q ss_pred             cCCccccCCCCC
Q 046844          865 SYNNLVGKIPTS  876 (967)
Q Consensus       865 s~N~l~g~ip~~  876 (967)
                      .++.+.|.-|.+
T Consensus       154 gnepl~~~~~~k  165 (177)
T KOG4579|consen  154 GNEPLGDETKKK  165 (177)
T ss_pred             cCCcccccCccc
Confidence            555555555543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.12  E-value=1.7e-06  Score=85.59  Aligned_cols=113  Identities=17%  Similarity=0.185  Sum_probs=63.1

Q ss_pred             CCCCCCEEeccCCCCCCCCCCC----CCCCCCCCEEEccCCCCCCCcc-----ccccCCCCCCEEEccCCCCCCC----C
Q 046844          245 HVPTLETLDLSINQLLQGSLPN----FPKNSSLRDLILSHTGLSGTLP-----DSIGNLENLTRVEVSSCNFTGP----I  311 (967)
Q Consensus       245 ~l~~L~~L~L~~n~~~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~-----~~l~~l~~L~~L~Ls~n~l~~~----~  311 (967)
                      .-|.|++.....|++..++...    +..-..|+++.+..|.|.-...     ..+..+.+|+.|||..|.++..    +
T Consensus       155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L  234 (388)
T COG5238         155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL  234 (388)
T ss_pred             cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence            3456666666666655544331    2223467777777776653211     1234567777777777776632    2


Q ss_pred             CccccCCCCCcEEEccCccccccCc-------cccccCcccEEECCCCCCCCC
Q 046844          312 PPSMANLTQLFHMDFSSNHFFGPIP-------SLHKSRNLNNLDLSFNNLSGG  357 (967)
Q Consensus       312 ~~~l~~l~~L~~L~L~~n~l~~~~~-------~~~~~~~L~~L~L~~n~l~~~  357 (967)
                      ...+..++.|+.|.+..|-++..-.       .-...++|..|...+|...+.
T Consensus       235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence            2334455667777777776643211       112344777777777766543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.07  E-value=7e-08  Score=107.33  Aligned_cols=127  Identities=30%  Similarity=0.292  Sum_probs=64.8

Q ss_pred             CcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEE
Q 046844          594 FQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLD  673 (967)
Q Consensus       594 L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  673 (967)
                      |.+.+.++|.+. .+...+...+  .|+.|+|++|+++ .+. . +..++.|++|||++|.++...--...+|. |+.|.
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~--ale~LnLshNk~~-~v~-~-Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~  238 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLP--ALESLNLSHNKFT-KVD-N-LRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN  238 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHH--Hhhhhccchhhhh-hhH-H-HHhcccccccccccchhccccccchhhhh-heeee
Confidence            444555555554 3444444433  5556666666655 222 1 45555666666666666533222333444 66666


Q ss_pred             CCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCc
Q 046844          674 LRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFS  730 (967)
Q Consensus       674 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~  730 (967)
                      +++|.++..  ..+.++.+|+-||+++|-+.+.-. -.-+..+..|+.|.|.+|++-
T Consensus       239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ecccHHHhh--hhHHhhhhhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCccc
Confidence            666655542  234555666666666665555421 122334455566666666653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=2.5e-06  Score=85.49  Aligned_cols=68  Identities=29%  Similarity=0.260  Sum_probs=41.6

Q ss_pred             HhcCCCCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCC
Q 046844          143 FLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYG  211 (967)
Q Consensus       143 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~  211 (967)
                      +-..++.++++|+.+|.+++- .+...-+.++|.|+.|+|+.|.+...+...-....+|++|-|.+..+
T Consensus        66 ~~~~~~~v~elDL~~N~iSdW-seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   66 FGSSVTDVKELDLTGNLISDW-SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             HHHHhhhhhhhhcccchhccH-HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence            344566777777777777653 34455567788888888888877764432213445555555555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.87  E-value=1.5e-06  Score=91.27  Aligned_cols=296  Identities=20%  Similarity=0.162  Sum_probs=184.0

Q ss_pred             CCCCEEeCCCCCCCcc--CChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCc-cCCCcchhHH
Q 046844           92 TNLTYLNLSQGGFAGE--IPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRV-DLSASGTEWC  168 (967)
Q Consensus        92 ~~L~~L~Ls~~~~~~~--lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~-~l~~~~~~~~  168 (967)
                      ..|+.|.++++.-.+.  +-....+++++++|++.+|..++      ....-..-..+++|++|++..| .+++.   ..
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT------d~s~~sla~~C~~l~~l~L~~c~~iT~~---~L  208 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT------DSSLLSLARYCRKLRHLNLHSCSSITDV---SL  208 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceecc------HHHHHHHHHhcchhhhhhhcccchhHHH---HH
Confidence            4678888888864432  22334689999999999987655      3344555678999999999884 34332   12


Q ss_pred             H-HhcCCCCccEEEccCCC-CCCC-CcccccCCCCCCEEEccCCCCCCcchhhh----cCCCCCCEEeccCCCC-CCcc-
Q 046844          169 K-ALSFLPNLQVLSLSGCD-LSGP-INHYLAKSRSLSVIRLHYNYGLSSGTEFL----AHLTNLKALDLSECGL-QGKF-  239 (967)
Q Consensus       169 ~-~l~~l~~L~~L~Ls~~~-l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~l----~~l~~L~~L~Ls~n~l-~~~~-  239 (967)
                      + -...+++|++|++++|. +++. +.....+++.++.+.+.+|.-.+.  +.+    +.+..+.++++..|.. +..- 
T Consensus       209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD~~~  286 (483)
T KOG4341|consen  209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTDEDL  286 (483)
T ss_pred             HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccchHH
Confidence            2 33568999999999984 4442 223455677777777776632221  222    3455577777767643 2221 


Q ss_pred             chhccCCCCCCEEeccCCCCC-CCCCCCC-CCCCCCCEEEccCCCC-CCCccccc-cCCCCCCEEEccCCCCC--CCCCc
Q 046844          240 PEKILHVPTLETLDLSINQLL-QGSLPNF-PKNSSLRDLILSHTGL-SGTLPDSI-GNLENLTRVEVSSCNFT--GPIPP  313 (967)
Q Consensus       240 ~~~l~~l~~L~~L~L~~n~~~-~~~~~~~-~~l~~L~~L~L~~n~l-~~~~~~~l-~~l~~L~~L~Ls~n~l~--~~~~~  313 (967)
                      -..-..+..|+.|+.+++... ...+.++ .++++|+.|-++.++- +..--..+ .+++.|+.+++..+...  +.+..
T Consensus       287 ~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s  366 (483)
T KOG4341|consen  287 WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS  366 (483)
T ss_pred             HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh
Confidence            111235678899998887531 1112223 3488999999998873 22211222 36788999999888653  22233


Q ss_pred             cccCCCCCcEEEccCccccccC--cc----ccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCC--cCh
Q 046844          314 SMANLTQLFHMDFSSNHFFGPI--PS----LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGS--IPR  385 (967)
Q Consensus       314 ~l~~l~~L~~L~L~~n~l~~~~--~~----~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~  385 (967)
                      .-.+++.|+.+.++.|.....-  ..    .-....|+.+.+++++......-..+..+++|+.+++.++.-...  +..
T Consensus       367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~  446 (483)
T KOG4341|consen  367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR  446 (483)
T ss_pred             hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence            3356889999999988653221  11    122337889999999876544444467888999999988764321  222


Q ss_pred             hccCCCCCCEEeC
Q 046844          386 SLFLLPNLEMLQL  398 (967)
Q Consensus       386 ~l~~l~~L~~L~L  398 (967)
                      .-.++|+++...+
T Consensus       447 ~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  447 FATHLPNIKVHAY  459 (483)
T ss_pred             HHhhCccceehhh
Confidence            3346777776543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.76  E-value=2.9e-05  Score=91.81  Aligned_cols=109  Identities=22%  Similarity=0.266  Sum_probs=65.4

Q ss_pred             CCCCEEeCCCCCCCccccccccccHHHHhc-CCCCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCccc
Q 046844          116 TRLVTLDLSGIVPIEYSYTVWIANLSLFLQ-NLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHY  194 (967)
Q Consensus       116 ~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~  194 (967)
                      .+|++||++|...       ....|+..++ .+|.|++|.+.+..+..  .++......+|+|+.||+|+++++..  ..
T Consensus       122 ~nL~~LdI~G~~~-------~s~~W~~kig~~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS~TnI~nl--~G  190 (699)
T KOG3665|consen  122 QNLQHLDISGSEL-------FSNGWPKKIGTMLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDISGTNISNL--SG  190 (699)
T ss_pred             HhhhhcCccccch-------hhccHHHHHhhhCcccceEEecCceecc--hhHHHHhhccCccceeecCCCCccCc--HH
Confidence            4677777776332       2344554443 46777777777765543  23445556777888888887777654  45


Q ss_pred             ccCCCCCCEEEccCCCCCC-cchhhhcCCCCCCEEeccCCCC
Q 046844          195 LAKSRSLSVIRLHYNYGLS-SGTEFLAHLTNLKALDLSECGL  235 (967)
Q Consensus       195 l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l  235 (967)
                      ++.+++|++|.+.+-.+.. .....+.++++|+.||+|....
T Consensus       191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            6667777777666554443 2223345566666666665543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=3.2e-06  Score=84.81  Aligned_cols=157  Identities=20%  Similarity=0.161  Sum_probs=73.3

Q ss_pred             ccCCCCCcEEEccCccccccCccc-cccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCC--cChhcc-CC
Q 046844          315 MANLTQLFHMDFSSNHFFGPIPSL-HKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGS--IPRSLF-LL  390 (967)
Q Consensus       315 l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~-~l  390 (967)
                      +.++|.|++|+++.|++...+... ....+|++|-|.+..+.-.-..+++..+|.++.|.++.|.+...  ...... .-
T Consensus        93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s  172 (418)
T KOG2982|consen   93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS  172 (418)
T ss_pred             HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccc
Confidence            344445555555555444433332 12235566666555554333334455566666666666633210  000111 01


Q ss_pred             CCCCEEeCcCC---------cCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCC
Q 046844          391 PNLEMLQLSNN---------QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASS  461 (967)
Q Consensus       391 ~~L~~L~L~~n---------~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  461 (967)
                      +.+++|.+..|         ++..        .++++..+.+..|.+...-...-+..+|.+..|+|+.|+|....    
T Consensus       173 ~~v~tlh~~~c~~~~w~~~~~l~r--------~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswa----  240 (418)
T KOG2982|consen  173 TEVLTLHQLPCLEQLWLNKNKLSR--------IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWA----  240 (418)
T ss_pred             hhhhhhhcCCcHHHHHHHHHhHHh--------hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHH----
Confidence            22333333333         2222        23345555555555543333333345566666666666665331    


Q ss_pred             CCccCCCCCCCCCccEEECcCCccC
Q 046844          462 KPRAIPILKNQSQLSVLDISDNQIS  486 (967)
Q Consensus       462 ~~~~ip~l~~~~~L~~L~Ls~n~i~  486 (967)
                         .+..+..+++|..|.++++.+.
T Consensus       241 ---svD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  241 ---SVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             ---HHHHHcCCchhheeeccCCccc
Confidence               2233556666666666666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.73  E-value=1.9e-05  Score=56.90  Aligned_cols=36  Identities=39%  Similarity=0.662  Sum_probs=18.9

Q ss_pred             CCcEEECCCCCCcccCCccccCCCCCCeEeCcCcccc
Q 046844          810 SLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS  846 (967)
Q Consensus       810 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~  846 (967)
                      +|++|++++|+++ .+|..+++|++|+.||+++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34445555555555555555555

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.73  E-value=5.5e-05  Score=72.16  Aligned_cols=107  Identities=21%  Similarity=0.197  Sum_probs=84.3

Q ss_pred             CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCcccccc-chhhhcCCCCCEEE
Q 046844          619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNF-PCWLRNASSLQVLV  697 (967)
Q Consensus       619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~  697 (967)
                      ....+||++|.+. .++.  |+.++.|.+|.|++|+|+.+-|.--..+++|+.|.|.+|.|.... -.-+..|+.|++|.
T Consensus        43 ~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            6778999999986 4543  889999999999999999888876677889999999999887532 12366799999999


Q ss_pred             ccCCccceecCC-CCCCCCCCCCcEEecCCcc
Q 046844          698 LRSNNFSGHISC-PRNKVSWPLLQIVDLACNK  728 (967)
Q Consensus       698 L~~N~l~~~~~~-p~~~~~l~~L~~Ldls~N~  728 (967)
                      +-+|+.+..-.. -..+..+|+|++||+..=.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            999998753211 1246788999999987644

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.68  E-value=0.00015  Score=78.80  Aligned_cols=56  Identities=16%  Similarity=0.242  Sum_probs=27.7

Q ss_pred             CCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccc-cccCcCCCCCCCCccEEeCCCC
Q 046844          469 LKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN-LVVSLQEPYSISGIRFLDLHSN  531 (967)
Q Consensus       469 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~l~~~~~~~~L~~L~Ls~n  531 (967)
                      +..+.+++.|++++|.++ .+|.    . ..+|+.|++++| .++.+|... .++|+.|++++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~----L-P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV----L-PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC----C-CCCCcEEEccCCCCcccCCchh-hhhhhheEccCc
Confidence            344566777777777665 3342    1 124666666552 333333322 234555555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.66  E-value=4e-05  Score=55.24  Aligned_cols=36  Identities=44%  Similarity=0.601  Sum_probs=15.7

Q ss_pred             cccEEeCCCCccCCCCcccccCCCCCCEEECCCCccc
Q 046844          644 GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYIS  680 (967)
Q Consensus       644 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  680 (967)
                      +|++|++++|+|+. +|..+++|++|++|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            34444444444442 2333444455555555555444

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.65  E-value=2.6e-06  Score=75.56  Aligned_cols=112  Identities=21%  Similarity=0.258  Sum_probs=78.4

Q ss_pred             cCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCC
Q 046844          590 KATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML  669 (967)
Q Consensus       590 ~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  669 (967)
                      ....|+..+|++|.+. ..|..+... .+.++.|++++|.++ .+|.. +..++.|+.|+++.|.+. ..|+.+..+.+|
T Consensus        51 ~~~el~~i~ls~N~fk-~fp~kft~k-f~t~t~lNl~~neis-dvPeE-~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l  125 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFK-KFPKKFTIK-FPTATTLNLANNEIS-DVPEE-LAAMPALRSLNLRFNPLN-AEPRVIAPLIKL  125 (177)
T ss_pred             CCceEEEEecccchhh-hCCHHHhhc-cchhhhhhcchhhhh-hchHH-HhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence            3455667788888887 566665443 237888888888888 78888 888888888888888888 556777778888


Q ss_pred             CEEECCCCccccccchhhhcCCCCCEEEccCCccceec
Q 046844          670 QVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHI  707 (967)
Q Consensus       670 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  707 (967)
                      -.||..+|.+..+.-+.| .-+..-...++++.+.+.-
T Consensus       126 ~~Lds~~na~~eid~dl~-~s~~~al~~lgnepl~~~~  162 (177)
T KOG4579|consen  126 DMLDSPENARAEIDVDLF-YSSLPALIKLGNEPLGDET  162 (177)
T ss_pred             HHhcCCCCccccCcHHHh-ccccHHHHHhcCCcccccC
Confidence            889988888876544432 2222223345667676543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.57  E-value=4.3e-05  Score=90.45  Aligned_cols=150  Identities=24%  Similarity=0.294  Sum_probs=106.4

Q ss_pred             CCCCEEeCCCCCCC-ccCChhcc-CCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHH
Q 046844           92 TNLTYLNLSQGGFA-GEIPTEIS-SLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCK  169 (967)
Q Consensus        92 ~~L~~L~Ls~~~~~-~~lp~~l~-~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~  169 (967)
                      .+|++||+++.... ..=|..++ .||.|++|.+++- .      ....+......++++|+.||+++++++..     .
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-----~  189 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-Q------FDNDDFSQLCASFPNLRSLDISGTNISNL-----S  189 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-e------ecchhHHHHhhccCccceeecCCCCccCc-----H
Confidence            78999999886432 23344554 4899999999872 2      22334556678899999999999988764     6


Q ss_pred             HhcCCCCccEEEccCCCCCC-CCcccccCCCCCCEEEccCCCCCCcc--h----hhhcCCCCCCEEeccCCCCCCccchh
Q 046844          170 ALSFLPNLQVLSLSGCDLSG-PINHYLAKSRSLSVIRLHYNYGLSSG--T----EFLAHLTNLKALDLSECGLQGKFPEK  242 (967)
Q Consensus       170 ~l~~l~~L~~L~Ls~~~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~--~----~~l~~l~~L~~L~Ls~n~l~~~~~~~  242 (967)
                      +++.+++|++|.+.+-.+.. ..-..+.++++|++||+|........  .    +.-..+|+|+.||.|+..+.+.+-+.
T Consensus       190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence            78899999999998877765 22346778999999999987544332  1    22246899999999999888665554


Q ss_pred             cc-CCCCCCEEe
Q 046844          243 IL-HVPTLETLD  253 (967)
Q Consensus       243 l~-~l~~L~~L~  253 (967)
                      +- ..++|+.+.
T Consensus       270 ll~sH~~L~~i~  281 (699)
T KOG3665|consen  270 LLNSHPNLQQIA  281 (699)
T ss_pred             HHHhCccHhhhh
Confidence            32 345555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.43  E-value=0.00037  Score=66.68  Aligned_cols=86  Identities=23%  Similarity=0.220  Sum_probs=71.5

Q ss_pred             CCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcE
Q 046844          642 DCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQI  721 (967)
Q Consensus       642 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~  721 (967)
                      +.+...+||++|.+...  ..|..++.|.+|.+++|+|+.+.|..-.-+++|+.|.|.+|.|...-. -.-+..+|.|+.
T Consensus        41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d-l~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD-LDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhh-cchhccCCccce
Confidence            35678899999999754  457789999999999999999988776678999999999999975432 345678899999


Q ss_pred             EecCCccCc
Q 046844          722 VDLACNKFS  730 (967)
Q Consensus       722 Ldls~N~l~  730 (967)
                      |.+-+|+..
T Consensus       118 Ltll~Npv~  126 (233)
T KOG1644|consen  118 LTLLGNPVE  126 (233)
T ss_pred             eeecCCchh
Confidence            999999864

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.40  E-value=0.00045  Score=75.21  Aligned_cols=74  Identities=14%  Similarity=0.171  Sum_probs=50.7

Q ss_pred             CCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCC-ccceecCCCCCCCCCCCC
Q 046844          641 GDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSN-NFSGHISCPRNKVSWPLL  719 (967)
Q Consensus       641 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~p~~~~~l~~L  719 (967)
                      .+.+++.|++++|.++. +| .  --.+|+.|+++++.--..+|+.+  .++|+.|++++| .+...   |      +.|
T Consensus        50 ~~~~l~~L~Is~c~L~s-LP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL---P------~sL  114 (426)
T PRK15386         50 EARASGRLYIKDCDIES-LP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL---P------ESV  114 (426)
T ss_pred             HhcCCCEEEeCCCCCcc-cC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc---c------ccc
Confidence            35789999999998884 45 2  23469999998855445566655  368999999988 44422   4      346


Q ss_pred             cEEecCCccC
Q 046844          720 QIVDLACNKF  729 (967)
Q Consensus       720 ~~Ldls~N~l  729 (967)
                      +.|+++.|..
T Consensus       115 e~L~L~~n~~  124 (426)
T PRK15386        115 RSLEIKGSAT  124 (426)
T ss_pred             ceEEeCCCCC
Confidence            7777776654

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.95  E-value=0.0005  Score=49.44  Aligned_cols=21  Identities=62%  Similarity=1.255  Sum_probs=14.8

Q ss_pred             CCcCCCCCCCC--CCCcccceeEeC
Q 046844           16 TKLSQWSSHQS--SDCCDWSGVRCD   38 (967)
Q Consensus        16 ~~l~~w~~~~~--~~~c~w~gv~C~   38 (967)
                      ..+++|  ...  .+||+|.||+|+
T Consensus        21 ~~l~~W--~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   21 GVLSSW--NPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             CCCTT----TT--S-CCCSTTEEE-
T ss_pred             cccccC--CCcCCCCCeeeccEEeC
Confidence            579999  444  799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.91  E-value=0.00034  Score=81.89  Aligned_cols=14  Identities=36%  Similarity=0.387  Sum_probs=7.1

Q ss_pred             CCCCCEEeCcCCcC
Q 046844          390 LPNLEMLQLSNNQF  403 (967)
Q Consensus       390 l~~L~~L~L~~n~l  403 (967)
                      +..++.+++.++..
T Consensus       426 ~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  426 CSNLKDLDLSGCRV  439 (482)
T ss_pred             hhccccCCccCccc
Confidence            44455555555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.69  E-value=0.0011  Score=66.43  Aligned_cols=59  Identities=22%  Similarity=0.266  Sum_probs=32.7

Q ss_pred             CCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCC--CCCccCChhccCCCCCCEEeCCCC
Q 046844           65 DLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQG--GFAGEIPTEISSLTRLVTLDLSGI  126 (967)
Q Consensus        65 ~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~--~~~~~lp~~l~~l~~L~~L~Ls~~  126 (967)
                      .+..|+.|++.+..++..   ..+-.|++|+.|.+|.|  ++.+.++....++++|++|++++|
T Consensus        41 ~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N  101 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN  101 (260)
T ss_pred             cccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence            444555555554444422   23445666777777766  445555544455566666666664

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.68  E-value=0.0041  Score=57.73  Aligned_cols=105  Identities=19%  Similarity=0.357  Sum_probs=45.3

Q ss_pred             hhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCC
Q 046844          588 VCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN  667 (967)
Q Consensus       588 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  667 (967)
                      |.++++|+.+.+.. .+...-...+..+.  +|+.+++.++ +. .++..+|.++.+|+.+.+.+ .+.......|..++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~--~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCT--SLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-T--T-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccc--cccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccc
Confidence            44455555555553 33322223333333  5666666553 43 55555566665666666654 33333445566666


Q ss_pred             CCCEEECCCCccccccchhhhcCCCCCEEEccC
Q 046844          668 MLQVLDLRSNYISDNFPCWLRNASSLQVLVLRS  700 (967)
Q Consensus       668 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  700 (967)
                      +|+.+++..+ ++.+...+|.++ .|+.+.+..
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            6666666554 554455556555 666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.62  E-value=0.0043  Score=57.54  Aligned_cols=83  Identities=17%  Similarity=0.263  Sum_probs=29.1

Q ss_pred             hhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCC
Q 046844          218 FLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENL  297 (967)
Q Consensus       218 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  297 (967)
                      .|.++++|+.+.+..+ +.......|.++++++.+.+.. .+.......|..+++|+.+.+..+ +.......|.++ .|
T Consensus        30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l  105 (129)
T PF13306_consen   30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL  105 (129)
T ss_dssp             TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred             hccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence            3444444444444442 3322333344444445554433 222233334444455555555432 222223344444 55


Q ss_pred             CEEEccC
Q 046844          298 TRVEVSS  304 (967)
Q Consensus       298 ~~L~Ls~  304 (967)
                      +.+.+..
T Consensus       106 ~~i~~~~  112 (129)
T PF13306_consen  106 KEINIPS  112 (129)
T ss_dssp             -EEE-TT
T ss_pred             eEEEECC
Confidence            5555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=0.00029  Score=70.51  Aligned_cols=37  Identities=22%  Similarity=0.142  Sum_probs=21.4

Q ss_pred             CCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCC
Q 046844           66 LQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFA  105 (967)
Q Consensus        66 l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~  105 (967)
                      +.+.+.|+..++.+.++   ....+++.|++|.||-|.++
T Consensus        18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIs   54 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKIS   54 (388)
T ss_pred             HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccc
Confidence            44555666666666544   23345666666666666655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.15  E-value=0.0037  Score=62.77  Aligned_cols=60  Identities=35%  Similarity=0.453  Sum_probs=36.8

Q ss_pred             CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCC--ccCCCCcccccCCCCCCEEECCCCcccc
Q 046844          619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGN--QLQGVVPKSLANCNMLQVLDLRSNYISD  681 (967)
Q Consensus       619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  681 (967)
                      .|+.|.+.+..++ ++..  |+.+++|+.|.++.|  ++++.++.....+++|++|++++|+|+.
T Consensus        44 ~le~ls~~n~glt-t~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~  105 (260)
T KOG2739|consen   44 ELELLSVINVGLT-TLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD  105 (260)
T ss_pred             chhhhhhhcccee-eccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence            6666666666665 3322  666677777777777  5555555445556666666666666653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.14  E-value=0.0026  Score=74.31  Aligned_cols=239  Identities=22%  Similarity=0.205  Sum_probs=132.5

Q ss_pred             CCCCCCeeeCCCCC-CCCCCCCccccCCCCCCEEeCCCC-CCCccCC----hhccCCCCCCEEeCCCCCCCccccccccc
Q 046844           65 DLQYLQSLNLGFTL-FKGFQIPSRLGNLTNLTYLNLSQG-GFAGEIP----TEISSLTRLVTLDLSGIVPIEYSYTVWIA  138 (967)
Q Consensus        65 ~l~~L~~L~Ls~n~-~~~~~lp~~l~~l~~L~~L~Ls~~-~~~~~lp----~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~  138 (967)
                      ..+.|+.|.+..+. +....+-.....+++|+.|+++++ ......+    .....+.+|++|+++++..++      ..
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is------d~  259 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT------DI  259 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC------ch
Confidence            47888999888773 332213345668899999999873 2221222    234567899999999875443      23


Q ss_pred             cHHHHhcCCCCCCEEEcCCcc-CCCcchhHHHHhcCCCCccEEEccCCCCCCC--CcccccCCCCCCEEEccCCCCCCcc
Q 046844          139 NLSLFLQNLTELTELHLDRVD-LSASGTEWCKALSFLPNLQVLSLSGCDLSGP--INHYLAKSRSLSVIRLHYNYGLSSG  215 (967)
Q Consensus       139 ~l~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~--~~~~l~~l~~L~~L~L~~n~~~~~~  215 (967)
                      .+......+++|++|.+..+. +++.  .+......++.|++|++++|.....  ......++++|+.|.+.....    
T Consensus       260 ~l~~l~~~c~~L~~L~l~~c~~lt~~--gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----  333 (482)
T KOG1947|consen  260 GLSALASRCPNLETLSLSNCSNLTDE--GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----  333 (482)
T ss_pred             hHHHHHhhCCCcceEccCCCCccchh--HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----
Confidence            333445558999999988776 4543  3344557789999999999875421  223344566666655443221    


Q ss_pred             hhhhcCCCCCCEEeccCCCCC---CccchhccCCCCCCEEeccCCCCCCCCC-CCCCCCCCCCEEEccCCCCCCCccccc
Q 046844          216 TEFLAHLTNLKALDLSECGLQ---GKFPEKILHVPTLETLDLSINQLLQGSL-PNFPKNSSLRDLILSHTGLSGTLPDSI  291 (967)
Q Consensus       216 ~~~l~~l~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l  291 (967)
                            +..++.+.+..+...   ......+..+++++.+.+..+....... ..+.+++.|. ..+..         ..
T Consensus       334 ------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~---------~~  397 (482)
T KOG1947|consen  334 ------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL---------RL  397 (482)
T ss_pred             ------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH---------Hh
Confidence                  344444444443321   1222234566777777777665333331 2334455552 21111         11


Q ss_pred             cCCCCCCEEEccCCCCCCC-CCccccC-CCCCcEEEccCccc
Q 046844          292 GNLENLTRVEVSSCNFTGP-IPPSMAN-LTQLFHMDFSSNHF  331 (967)
Q Consensus       292 ~~l~~L~~L~Ls~n~l~~~-~~~~l~~-l~~L~~L~L~~n~l  331 (967)
                      .....++.|+++.+..... .-..... +..++.+++.++..
T Consensus       398 ~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  398 CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             ccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            1122267777777654311 1111111 45566666666543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.67  E-value=0.0031  Score=37.70  Aligned_cols=12  Identities=67%  Similarity=0.805  Sum_probs=5.0

Q ss_pred             CCeEeCcCcccc
Q 046844          835 IESLDLSMNNLS  846 (967)
Q Consensus       835 L~~LdLs~N~l~  846 (967)
                      |+.|||++|+|+
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            334444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.67  E-value=0.00031  Score=70.21  Aligned_cols=82  Identities=32%  Similarity=0.372  Sum_probs=45.8

Q ss_pred             CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccc-hhhhcCCCCCEEE
Q 046844          619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFP-CWLRNASSLQVLV  697 (967)
Q Consensus       619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~  697 (967)
                      +.+.|++.++.++ .|.-  ...++.|++|.|+-|+|+..-|  |..|+.|++|+|..|.|..... .-+.++++|+.|.
T Consensus        20 ~vkKLNcwg~~L~-DIsi--c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD-DISI--CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCcc-HHHH--HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            4456666666665 3332  2445666666666666664433  5566666666666666654322 2344556666666


Q ss_pred             ccCCccce
Q 046844          698 LRSNNFSG  705 (967)
Q Consensus       698 L~~N~l~~  705 (967)
                      |..|+-.|
T Consensus        95 L~ENPCc~  102 (388)
T KOG2123|consen   95 LDENPCCG  102 (388)
T ss_pred             hccCCccc
Confidence            66665444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.63  E-value=0.0043  Score=37.07  Aligned_cols=22  Identities=64%  Similarity=0.806  Sum_probs=15.0

Q ss_pred             CCcEEECCCCCCcccCCccccCC
Q 046844          810 SLYALNMSHNALTGSIPSSFGNL  832 (967)
Q Consensus       810 ~L~~L~Ls~N~l~g~ip~~~~~l  832 (967)
                      +|++||||+|+|+ .||.+|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            3677777777777 677776653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.85  E-value=0.001  Score=75.54  Aligned_cols=73  Identities=29%  Similarity=0.423  Sum_probs=33.6

Q ss_pred             cHHHHhcCCCCCCEEEcCCccCCCcchhH-HHHhcCC-CCccEEEccCCCCCCC----CcccccCCCCCCEEEccCCCC
Q 046844          139 NLSLFLQNLTELTELHLDRVDLSASGTEW-CKALSFL-PNLQVLSLSGCDLSGP----INHYLAKSRSLSVIRLHYNYG  211 (967)
Q Consensus       139 ~l~~~l~~l~~L~~L~l~~~~l~~~~~~~-~~~l~~l-~~L~~L~Ls~~~l~~~----~~~~l~~l~~L~~L~L~~n~~  211 (967)
                      .+...+..+..|+.|+++++.+.+.+... +..+... ..+++|++..|.++..    +.+.+.....++.++++.|.+
T Consensus       106 ~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  106 ELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence            34444455555555555555554333222 2222222 3455555555555543    223344455555555555544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.92  E-value=0.0066  Score=59.45  Aligned_cols=80  Identities=15%  Similarity=0.095  Sum_probs=69.3

Q ss_pred             CcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCChhccCCCCCCE
Q 046844           41 GHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVT  120 (967)
Q Consensus        41 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~  120 (967)
                      .||+.||++.+.+...   ...+..++.|..||++.|.+.  .+|..++++..++.+++.+|..+ ..|.+.++++++++
T Consensus        42 kr~tvld~~s~r~vn~---~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNL---GKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             ceeeeehhhhhHHHhh---ccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            5899999999887632   356778889999999999888  68999999999999999988887 88999999999999


Q ss_pred             EeCCCC
Q 046844          121 LDLSGI  126 (967)
Q Consensus       121 L~Ls~~  126 (967)
                      +++.++
T Consensus       116 ~e~k~~  121 (326)
T KOG0473|consen  116 NEQKKT  121 (326)
T ss_pred             hhhccC
Confidence            999885

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.79  E-value=0.0059  Score=69.44  Aligned_cols=191  Identities=29%  Similarity=0.272  Sum_probs=115.3

Q ss_pred             CCCCeeeCCCCCCCCCC---CCccccCCCCCCEEeCCCCCCCccCChhc----cCC-CCCCEEeCCCCCCCccccccccc
Q 046844           67 QYLQSLNLGFTLFKGFQ---IPSRLGNLTNLTYLNLSQGGFAGEIPTEI----SSL-TRLVTLDLSGIVPIEYSYTVWIA  138 (967)
Q Consensus        67 ~~L~~L~Ls~n~~~~~~---lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l----~~l-~~L~~L~Ls~~~~l~~~~~~~~~  138 (967)
                      ..++.|.|.+|.+....   +-..+....+|..|+++.|.+.+.--..+    ... ..|++|++..|....    ....
T Consensus        87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~----~g~~  162 (478)
T KOG4308|consen   87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTS----EGAA  162 (478)
T ss_pred             hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccc----cchH
Confidence            34677777777776541   22345566777778888777764322222    222 456667766653322    2333


Q ss_pred             cHHHHhcCCCCCCEEEcCCccCCCcchh-HHHHhc----CCCCccEEEccCCCCCCCCc----ccccCCCC-CCEEEccC
Q 046844          139 NLSLFLQNLTELTELHLDRVDLSASGTE-WCKALS----FLPNLQVLSLSGCDLSGPIN----HYLAKSRS-LSVIRLHY  208 (967)
Q Consensus       139 ~l~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~l~----~l~~L~~L~Ls~~~l~~~~~----~~l~~l~~-L~~L~L~~  208 (967)
                      .+...+.+...++.++++.|.+...+.. .+.++.    ...++++|.+++|.++....    ..+...+. +..+++..
T Consensus       163 ~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~  242 (478)
T KOG4308|consen  163 PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS  242 (478)
T ss_pred             HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh
Confidence            4455566677777777777766533322 223333    46778888888887764322    33444555 66688888


Q ss_pred             CCCCCcch----hhhcCC-CCCCEEeccCCCCCCcc----chhccCCCCCCEEeccCCCCCC
Q 046844          209 NYGLSSGT----EFLAHL-TNLKALDLSECGLQGKF----PEKILHVPTLETLDLSINQLLQ  261 (967)
Q Consensus       209 n~~~~~~~----~~l~~l-~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~~~~  261 (967)
                      |.+.+...    +.+..+ ..+++++++.|.++..-    ...+..++.++++.++.|.+..
T Consensus       243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            87765532    234444 57788888888887543    4455677788888888887644

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.38  E-value=0.011  Score=57.92  Aligned_cols=83  Identities=18%  Similarity=0.176  Sum_probs=72.2

Q ss_pred             CCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEE
Q 046844          784 PNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLN  863 (967)
Q Consensus       784 ~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~  863 (967)
                      ....+.||+|.|++.. .-..|.-++.+..||+|.|++. ..|..++++..+..+++-.|+++ ..|.++..++.+++++
T Consensus        41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            3457889999999863 3455777888999999999998 78999999999999999999998 6799999999999999


Q ss_pred             ccCCcc
Q 046844          864 LSYNNL  869 (967)
Q Consensus       864 ls~N~l  869 (967)
                      +..|.+
T Consensus       118 ~k~~~~  123 (326)
T KOG0473|consen  118 QKKTEF  123 (326)
T ss_pred             hccCcc
Confidence            999876

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.28  E-value=0.28  Score=27.10  Aligned_cols=13  Identities=38%  Similarity=0.534  Sum_probs=4.7

Q ss_pred             CCCEEeCCCCCCC
Q 046844           93 NLTYLNLSQGGFA  105 (967)
Q Consensus        93 ~L~~L~Ls~~~~~  105 (967)
                      +|++|+|++|++.
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444433

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.54  E-value=0.29  Score=29.86  Aligned_cols=22  Identities=36%  Similarity=0.350  Sum_probs=11.3

Q ss_pred             CCCCCEEECCCCccccccchhh
Q 046844          666 CNMLQVLDLRSNYISDNFPCWL  687 (967)
Q Consensus       666 l~~L~~L~Ls~N~l~~~~p~~l  687 (967)
                      +++|++|+|++|+|++.....+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            3566677777776665444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.89  E-value=0.68  Score=28.80  Aligned_cols=20  Identities=35%  Similarity=0.280  Sum_probs=11.0

Q ss_pred             CCCCEEECCCCccccccchh
Q 046844          667 NMLQVLDLRSNYISDNFPCW  686 (967)
Q Consensus       667 ~~L~~L~Ls~N~l~~~~p~~  686 (967)
                      ++|+.|+|++|+|+.+.+..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45566666666665544433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.89  E-value=0.68  Score=28.80  Aligned_cols=20  Identities=35%  Similarity=0.280  Sum_probs=11.0

Q ss_pred             CCCCEEECCCCccccccchh
Q 046844          667 NMLQVLDLRSNYISDNFPCW  686 (967)
Q Consensus       667 ~~L~~L~Ls~N~l~~~~p~~  686 (967)
                      ++|+.|+|++|+|+.+.+..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45566666666665544433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.81  E-value=0.69  Score=28.78  Aligned_cols=14  Identities=50%  Similarity=0.646  Sum_probs=7.6

Q ss_pred             CCCCeEeCcCcccc
Q 046844          833 KEIESLDLSMNNLS  846 (967)
Q Consensus       833 ~~L~~LdLs~N~l~  846 (967)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.81  E-value=0.69  Score=28.78  Aligned_cols=14  Identities=50%  Similarity=0.646  Sum_probs=7.6

Q ss_pred             CCCCeEeCcCcccc
Q 046844          833 KEIESLDLSMNNLS  846 (967)
Q Consensus       833 ~~L~~LdLs~N~l~  846 (967)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.02  E-value=0.31  Score=47.35  Aligned_cols=38  Identities=13%  Similarity=0.164  Sum_probs=23.4

Q ss_pred             CCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCc
Q 046844           93 NLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIE  130 (967)
Q Consensus        93 ~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~  130 (967)
                      .++.+|-+++.+..+--+.+.+++.++.|.+.+|..+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d  139 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD  139 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchh
Confidence            45666666666665555556666666666666665444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.57  E-value=0.23  Score=30.28  Aligned_cols=16  Identities=38%  Similarity=0.646  Sum_probs=7.1

Q ss_pred             CCCCeEeCcCcccccc
Q 046844          833 KEIESLDLSMNNLSGK  848 (967)
Q Consensus       833 ~~L~~LdLs~N~l~g~  848 (967)
                      ++|++|||++|+|++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            3455555555555443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.12  E-value=0.25  Score=47.98  Aligned_cols=32  Identities=41%  Similarity=0.524  Sum_probs=12.7

Q ss_pred             CCCCEEeccCCC-CCCCCCCCCCCCCCCCEEEc
Q 046844          247 PTLETLDLSINQ-LLQGSLPNFPKNSSLRDLIL  278 (967)
Q Consensus       247 ~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L  278 (967)
                      ++|+.|+|++|. |++..+..+..+++|+.|.+
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l  183 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL  183 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence            344444444332 23333333333444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	967
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-25
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-25
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		7e-09
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-08
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-06
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		3e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		3e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		5e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 177/707 (25%), Positives = 277/707 (39%), Gaps = 112/707 (15%)
Query: 257 NQLLQGSLPNFPKNSSLRDLILSHTGLSG--TLPDSIGNLENLTRVEVSS--CNFTGPIP 312
           N  + GS+  F  ++SL  L LS   LSG  T   S+G+   L  + VSS   +F G + 
Sbjct: 83  NSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 142
Query: 313 PSMANLTQLFHMDFSSNHFFGPIPSLHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIV 372
             +  L  L  +D S+N   G                      G + S    +L +L I 
Sbjct: 143 GGLK-LNSLEVLDLSANSISG------------------ANVVGWVLSDGCGELKHLAI- 182
Query: 373 VLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXXXXXGNRLEGPV 432
               N +SG +  S  +  NLE L +S+N F   +P +              GN+L G  
Sbjct: 183 --SGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDIS--GNKLSGDF 236
Query: 433 --PISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVP 490
              IS   EL+    L++SSN+F            IP L  +S L  L +++N+ +GE+P
Sbjct: 237 SRAISTCTELK---LLNISSNQFVG---------PIPPLPLKS-LQYLSLAENKFTGEIP 283
Query: 491 NWIWEVGSGNLKFLNLSHNLVVSLQEPY---------------------------SISGI 523
           +++       L  L+LS N       P+                            + G+
Sbjct: 284 DFL-SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 342
Query: 524 RFLDLHSNQLRGNIPYMSPNTSY----VDYSNNNFTS--IPADIGNFMSETEYFYFVAAN 577
           + LDL  N+  G +P    N S     +D S+NNF+   +P    N  +  +  Y    N
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL--QN 400
Query: 578 NSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDT 637
           N   G IP ++   +    L LS N LSGTIP+ L + S    ++             + 
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQEL 459
Query: 638 IFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLV 697
           ++       ILD   N L G +P  L+NC  L  + L +N ++   P W+    +L +L 
Sbjct: 460 MYVKTLETLILDF--NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 698 LRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLT--MMVAETKSGSEVNHL 755
           L +N+FSG+I  P        L  +DL  N F+G +          + A   +G    ++
Sbjct: 518 LSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 575
Query: 756 GIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALN 815
             +    + +     +  +GI  + L   +     + +S  + G          S+  L+
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 816 MSHNAL------------------------TGSIPSSFGNLKEIESLDLSMNNLSGKIPA 851
           MS+N L                        +GSIP   G+L+ +  LDLS N L G+IP 
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Query: 852 QXXXXXXXXXXXXXXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPL 898
                              G IP   Q ++F P  +  N GL G PL
Sbjct: 696 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  113 bits (283), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 177/707 (25%), Positives = 277/707 (39%), Gaps = 112/707 (15%)
Query: 257 NQLLQGSLPNFPKNSSLRDLILSHTGLSG--TLPDSIGNLENLTRVEVSS--CNFTGPIP 312
           N  + GS+  F  ++SL  L LS   LSG  T   S+G+   L  + VSS   +F G + 
Sbjct: 86  NSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 145
Query: 313 PSMANLTQLFHMDFSSNHFFGPIPSLHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIV 372
             +  L  L  +D S+N   G                      G + S    +L +L I 
Sbjct: 146 GGLK-LNSLEVLDLSANSISG------------------ANVVGWVLSDGCGELKHLAI- 185
Query: 373 VLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXXXXXGNRLEGPV 432
               N +SG +  S  +  NLE L +S+N F   +P +              GN+L G  
Sbjct: 186 --SGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDIS--GNKLSGDF 239
Query: 433 --PISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVP 490
              IS   EL+    L++SSN+F            IP L  +S L  L +++N+ +GE+P
Sbjct: 240 SRAISTCTELK---LLNISSNQFVG---------PIPPLPLKS-LQYLSLAENKFTGEIP 286
Query: 491 NWIWEVGSGNLKFLNLSHNLVVSLQEPY---------------------------SISGI 523
           +++       L  L+LS N       P+                            + G+
Sbjct: 287 DFL-SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 524 RFLDLHSNQLRGNIPYMSPNTSY----VDYSNNNFTS--IPADIGNFMSETEYFYFVAAN 577
           + LDL  N+  G +P    N S     +D S+NNF+   +P    N  +  +  Y    N
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL--QN 403
Query: 578 NSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDT 637
           N   G IP ++   +    L LS N LSGTIP+ L + S    ++             + 
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQEL 462
Query: 638 IFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLV 697
           ++       ILD   N L G +P  L+NC  L  + L +N ++   P W+    +L +L 
Sbjct: 463 MYVKTLETLILDF--NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 698 LRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLT--MMVAETKSGSEVNHL 755
           L +N+FSG+I  P        L  +DL  N F+G +          + A   +G    ++
Sbjct: 521 LSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 756 GIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALN 815
             +    + +     +  +GI  + L   +     + +S  + G          S+  L+
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 816 MSHNAL------------------------TGSIPSSFGNLKEIESLDLSMNNLSGKIPA 851
           MS+N L                        +GSIP   G+L+ +  LDLS N L G+IP 
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 852 QXXXXXXXXXXXXXXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPL 898
                              G IP   Q ++F P  +  N GL G PL
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 87/195 (44%), Gaps = 33/195 (16%)
Query: 219 LAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLI- 277
           +A LT L  L ++   + G  P+ +  + TL TLD S N L  G+LP  P  SSL +L+ 
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLP--PSISSLPNLVG 153
Query: 278 --LSHTGLSGTLPDSIGNLENL-TRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGP 334
                  +SG +PDS G+   L T + +S    TG IPP+ ANL   F +D S N     
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF-VDLSRNML--- 209
Query: 335 IPSLHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLE 394
                                 G +S  +    N Q + L  NSL+  + + + L  NL 
Sbjct: 210 ---------------------EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLN 247
Query: 395 MLQLSNNQFENQLPE 409
            L L NN+    LP+
Sbjct: 248 GLDLRNNRIYGTLPQ 262

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 119/286 (41%), Gaps = 50/286 (17%)
Query: 228 LDLSECGLQGKFP--EKILHVPTLETLDLS-INQLLQGSLPNFPKNSSLRDLILSHTGLS 284
           LDLS   L   +P    + ++P L  L +  IN L+    P   K + L  L ++HT +S
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 285 GTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKXXXX 344
           G +PD +  ++ L  ++ S    +G +PPS+++L  L  + F  N   G IP  +     
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY----- 169
Query: 345 XXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFE 404
                      G  S  F         + +  N L+G IP +   L NL  + LS N  E
Sbjct: 170 -----------GSFSKLFTS-------MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLE 210
Query: 405 NQLPEIXXXXXXXXXXXXXXGNRLE---GPVPISIFFELRNLYTLDLSSNKFSRLKLASS 461
                +               N L    G V +S     +NL  LDL +N     ++  +
Sbjct: 211 GD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-----KNLNGLDLRNN-----RIYGT 259
Query: 462 KPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLS 507
            P+ +  LK    L  L++S N + GE+P        GNL+  ++S
Sbjct: 260 LPQGLTQLK---FLHSLNVSFNNLCGEIPQ------GGNLQRFDVS 296

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 118/329 (35%), Gaps = 100/329 (30%)
Query: 571 FYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXX 630
           F ++   N+L G IP ++ K T    L +++ N+SG IP  L     S ++         
Sbjct: 80  FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-----SQIKT-------- 126
Query: 631 XXXXSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNA 690
                         L  LD S N L G +P S+++   L  +    N IS   P    + 
Sbjct: 127 --------------LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172
Query: 691 SSL-QVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSG 749
           S L   + +  N  +G I      ++   L  VDL+ N   G  S  +           G
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLN---LAFVDLSRNMLEGDASVLF-----------G 218
Query: 750 SEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFR 809
           S+ N   I +  N                          + D            ++G  +
Sbjct: 219 SDKNTQKIHLAKNSL------------------------AFDLG----------KVGLSK 244
Query: 810 SLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQXXXXXXXXXXXXXXXXX 869
           +L  L++ +N + G++P     LK + SL++S NNL                        
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL------------------------ 280
Query: 870 VGKIPTSTQLQSFSPTSYEGNKGLYGPPL 898
            G+IP    LQ F  ++Y  NK L G PL
Sbjct: 281 CGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 136/567 (23%), Positives = 213/567 (37%), Gaps = 84/567 (14%)
Query: 225 LKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS 284
           L+ LDLS C +Q         +  L TL L+ N +   +L  F   SSL+ L+   T L+
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 285 GTLPDSIGNLENLTRVEVSSCNFTG-PIPPSMANLTQLFHMDFSSNH----FFGPIPSLH 339
                 IG+L+ L  + V+        +P   +NLT L H+D SSN     +   +  LH
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
Query: 340 KXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQL 398
           +                 I    +++ + L  + L +N  S ++ ++    L  LE+ +L
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232
Query: 399 SNNQFENQ--LPEIXXXXXXXXXXXXXXGNRLEG-----PVPISIFFELRNLYTLDLSSN 451
              +F N+  L +                 RL          I +F  L N+ +  L S 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292
Query: 452 KFSRLK------------LASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSG 499
              R+K            L + K    P LK +S L  L  + N+      N   EV   
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS-LKRLTFTSNKGG----NAFSEVDLP 347
Query: 500 NLKFLNLSHNLV----VSLQEPYSISGIRFLDL-------------------HSNQLRGN 536
           +L+FL+LS N +       Q  +  + +++LDL                   H +    N
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
Query: 537 IPYMSP--------NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESV 588
           +  MS         N  Y+D S+ +       I N +S  E    +A N+     +P+  
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK-MAGNSFQENFLPDIF 466
Query: 589 CKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDTIFPGDC--GLQ 646
            +  N   LDLS   L    P      S S+L+V             DT FP  C   LQ
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFSL--DT-FPYKCLNSLQ 521
Query: 647 ILDLSGNQLQGV-------VPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLR 699
           +LD S N +           P SLA  N+ Q  D        +F  W+++   L V V R
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN-DFACTCEHQSFLQWIKDQRQLLVEVER 580
Query: 700 SNNFSGHISCPRNKVSWPLLQIVDLAC 726
                   + P +K   P+L + ++ C
Sbjct: 581 M-----ECATPSDKQGMPVLSL-NITC 601

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 123/522 (23%), Positives = 202/522 (38%), Gaps = 74/522 (14%)
Query: 225 LKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS 284
           L+ LDLS C +Q         +  L TL L+ N +   +L  F   SSL+ L+   T L+
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 285 GTLPDSIGNLENLTRVEVSSCNFTG-PIPPSMANLTQLFHMDFSSNH----FFGPIPSLH 339
                 IG+L+ L  + V+        +P   +NLT L H+D SSN     +   +  LH
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
Query: 340 KXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQL 398
           +                 I    +++ + L  + L +N  S ++ ++    L  LE+ +L
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232
Query: 399 SNNQFENQ--LPEIXXXXXXXXXXXXXXGNRLEG-----PVPISIFFELRNLYTLDLSSN 451
              +F N+  L +                 RL          I +F  L N+ +  L S 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292
Query: 452 KFSRLK------------LASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSG 499
              R+K            L + K    P LK +S L  L  + N+      N   EV   
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS-LKRLTFTSNKGG----NAFSEVDLP 347
Query: 500 NLKFLNLSHNLV----VSLQEPYSISGIRFLDLHSNQLRGNIPYMSPN------TSYVDY 549
           +L+FL+LS N +       Q  +  + +++LDL  N     +  MS N        ++D+
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN----GVITMSSNFLGLEQLEHLDF 403
Query: 550 SNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIP 609
            ++N   +          +E+  F++  N +                LD+S+ +      
Sbjct: 404 QHSNLKQM----------SEFSVFLSLRNLI---------------YLDISHTHTRVAFN 438
Query: 610 ACLITKSSSTLEVXXXXXXXXXXXXSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML 669
              I    S+LEV               IF     L  LDLS  QL+ + P +  + + L
Sbjct: 439 G--IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 670 QVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPR 711
           QVL++ SN +           +SLQ + L +N +    SCPR
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD--CSCPR 536

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 136/564 (24%), Positives = 211/564 (37%), Gaps = 87/564 (15%)
Query: 225 LKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS 284
           L+ LDLS C +Q         +  L TL L+ N +   +L  F   SSL+ L+   T L+
Sbjct: 78  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137
Query: 285 GTLPDSIGNLENLTRVEVSSCNFTG-PIPPSMANLTQLFHMDFSSNH----FFGPIPSLH 339
                 IG+L+ L  + V+        +P   +NLT L H+D SSN     +   +  LH
Sbjct: 138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197
Query: 340 KXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQL 398
           +                 I    +++ + L  + L +N  S ++ ++    L  LE+ +L
Sbjct: 198 QMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 256
Query: 399 SNNQFENQ--LPEIXXXXXXXXXXXXXXGNR-------LEGPVPISIFFELRNLYTLDLS 449
              +F N+  L +                 R       L+G   I +F  L N+ +  L 
Sbjct: 257 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDG--IIDLFNCLTNVSSFSLV 314
Query: 450 SNKFSRLK------------LASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVG 497
           S    R+K            L + K    P LK +S L  L  + N+      N   EV 
Sbjct: 315 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS-LKRLTFTSNKGG----NAFSEVD 369
Query: 498 SGNLKFLNLSHNLV----VSLQEPYSISGIRFLDL-------------------HSNQLR 534
             +L+FL+LS N +       Q  +    +++LDL                   H +   
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 429
Query: 535 GNIPYMSP--------NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPE 586
            N+  MS         N  Y+D S+ +       I N +S  E    +A N+     +P+
Sbjct: 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK-MAGNSFQENFLPD 488
Query: 587 SVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDTIFPGDC--G 644
              +  N   LDLS   L    P      S S+L+V             DT FP  C   
Sbjct: 489 IFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFSL--DT-FPYKCLNS 543
Query: 645 LQILDLSGNQLQGV-------VPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLV 697
           LQ+LD S N +           P SLA  N+ Q  D        +F  W+++   L V V
Sbjct: 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN-DFACTCEHQSFLQWIKDQRQLLVEV 602
Query: 698 LRSNNFSGHISCPRNKVSWPLLQI 721
            R        + P +K   P+L +
Sbjct: 603 ERM-----ECATPSDKQGMPVLSL 621

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	967
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-173
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-78
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-79
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-69
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-60
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-73
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-66
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-65
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-65
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-64
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-56
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-45
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-44
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-33
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-16
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	7e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  523 bits (1350), Expect = e-173
 Identities = 215/898 (23%), Positives = 340/898 (37%), Gaps = 189/898 (21%)

Query: 14  PSTKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGL-ENATGLFDLQYLQSL 72
               L  WSS  + + C + GV C     V  +DLS +P+  G    ++ L  L  L+SL
Sbjct: 26  DKNLLPDWSS--NKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82

Query: 73  NLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPT--EISSLTRLVTLDLS-----G 125
            L  +   G  +        +LT L+LS+   +G + T   + S + L  L++S      
Sbjct: 83  FLSNSHING-SVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF 140

Query: 126 IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGC 185
              +                 L  L  L L    +S +             L+ L++SG 
Sbjct: 141 PGKVS------------GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188

Query: 186 DLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILH 245
            +SG ++  +++  +L  + +  N   S+G  FL   + L+ LD+S   L G F   I  
Sbjct: 189 KISGDVD--VSRCVNLEFLDVSSNN-FSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST 245

Query: 246 VPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSI-GNLENLTRVEVSS 304
              L+ L++S NQ   G +P      SL+ L L+    +G +PD + G  + LT +++S 
Sbjct: 246 CTELKLLNISSNQF-VGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303

Query: 305 CNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP--SLHKSRNLNNLDLSFNNLSGGISSTF 362
            +F G +PP   + + L  +  SSN+F G +P  +L K R L  LDLSFN  SG +  + 
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363

Query: 363 WEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLD 422
                +L  + L  N+ SG I                        P +     + L +L 
Sbjct: 364 TNLSASLLTLDLSSNNFSGPIL-----------------------PNLCQNPKNTLQELY 400

Query: 423 LSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISD 482
           L  N   G +P ++                                  N S+L  L +S 
Sbjct: 401 LQNNGFTGKIPPTLS---------------------------------NCSELVSLHLSF 427

Query: 483 NQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSP 542
           N +SG +P+ +     G+L  L                   R L L  N L G       
Sbjct: 428 NYLSGTIPSSL-----GSLSKL-------------------RDLKLWLNMLEG------- 456

Query: 543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNN 602
                         IP ++   +   E        N L G IP  +   TN   + LSNN
Sbjct: 457 -------------EIPQELMY-VKTLETLIL--DFNDLTGEIPSGLSNCTNLNWISLSNN 500

Query: 603 NLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDC-GLQILDLSGNQLQGVVPK 661
            L+G IP  +       L +L L  N+ +G +   +  GDC  L  LDL+ N   G +P 
Sbjct: 501 RLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPA 556

Query: 662 SLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQI 721
           ++   +      + +N+I+     +++N    +      N                    
Sbjct: 557 AMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612

Query: 722 VDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLL 781
            ++    + G  S                                               
Sbjct: 613 CNITSRVYGGHTSP-----------------------------------------TFDNN 631

Query: 782 KVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLS 841
                   +D S N   G IP E+G    L+ LN+ HN ++GSIP   G+L+ +  LDLS
Sbjct: 632 GS---MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688

Query: 842 MNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLT 899
            N L G+IP  +++L  L+ ++LS NNL G IP   Q ++F P  +  N GL G PL 
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP 746

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  284 bits (729), Expect = 5e-84
 Identities = 127/717 (17%), Positives = 239/717 (33%), Gaps = 97/717 (13%)

Query: 176 NLQVLSLSGCDLSG-PINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECG 234
           + +V   S   L+  P +       +++V+ L +N             + L +LD+    
Sbjct: 5   SHEVADCSHLKLTQVPDDL----PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 235 LQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNL 294
           +    PE    +P L+ L+L  N+L Q S   F   ++L +L L    +     +     
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 295 ENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP---SLHKSRNLNNLDLSF 351
           +NL  +++S    +     +   L  L  +  S+N           +  + +L  L+LS 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 352 NNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIS 411
           N +       F   +  L  + L +  L  S+   L L      ++              
Sbjct: 181 NQIKEFSPGCF-HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR-------------- 225

Query: 412 NVSSSVLFDLDLSGNRLEGPVPISIFFELR--NLYTLDLSSNKFSRLKLASSKPRAIPIL 469
                   +L LS ++L      + F  L+  NL  LDLS N  + +   S         
Sbjct: 226 --------NLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS--------F 268

Query: 470 KNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLH 529
               QL    +  N I     + +   G  N+++LNL  +                    
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLH--GLFNVRYLNLKRSFTK----------------- 309

Query: 530 SNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVC 589
                               S  +   I      ++   E+      +N + G+      
Sbjct: 310 -----------------QSISLASLPKIDDFSFQWLKCLEHLNM--EDNDIPGIKSNMFT 350

Query: 590 KATNFQVLDLSNNNLSGT--IPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQI 647
              N + L LSN+  S         ++ + S L +LNL +N ++   SD  F     L++
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-FSWLGHLEV 409

Query: 648 LDLSGNQLQGVVPKS-LANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGH 706
           LDL  N++   +          +  + L  N              SLQ L+LR       
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 707 ISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYE 766
            S P        L I+DL+ N  +  ++   L  +         ++  L  ++  N    
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGL--------EKLEIL--DLQHNNLAR 518

Query: 767 VRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIP 826
           +       G    L  + ++   ++  SN F+            L  +++  N L     
Sbjct: 519 LWKHANPGGPIYFLKGLSHL-HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 827 SSFGNLKEIESLDLSMNNLSGKIPAQLA-SLNFLSVLNLSYNNLVGKIPTSTQLQSF 882
           S F N   ++SL+L  N ++         +   L+ L++ +N       +     ++
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  269 bits (691), Expect = 9e-79
 Identities = 137/645 (21%), Positives = 246/645 (38%), Gaps = 56/645 (8%)

Query: 92  TNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSG--IVPIEYSYTVWIANLSLFLQNLTE 149
            +    + S      ++P ++   T +  L+L+   +  +  +               ++
Sbjct: 4   VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAA----------NFTRYSQ 50

Query: 150 LTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYN 209
           LT L +    +S    E       LP L+VL+L   +LS   +   A   +L+ + L  N
Sbjct: 51  LTSLDVGFNTISKLEPE---LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107

Query: 210 YGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQL--LQGSLPNF 267
                         NL  LDLS  GL        + +  L+ L LS N++  L+    + 
Sbjct: 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167

Query: 268 PKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMA---NLTQLFHM 324
             NSSL+ L LS   +    P     +  L  + +++      +   +      T + ++
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 325 DFSSNHFFGPIPSL---HKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG 381
             S++       +     K  NL  LDLS+NNL+   + +F   L  L+   L +N++  
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQH 286

Query: 382 SIPRSLFLLPNLEMLQLSNNQFE-----NQLPEISNVS---SSVLFDLDLSGNRLEGPVP 433
               SL  L N+  L L  +  +       LP+I + S      L  L++  N + G + 
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IK 345

Query: 434 ISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWI 493
            ++F  L NL  L LS++  S   L +    ++      S L +L+++ N+IS    +  
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA----HSPLHILNLTKNKISKIESDAF 401

Query: 494 WEVGSGNLKFLNLSHNLVVSLQEPYSISG---IRFLDLHSNQLRGNIPYM---SPNTSYV 547
                G+L+ L+L  N +          G   I  + L  N+            P+   +
Sbjct: 402 S--WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 548 DYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLS-- 605
                   ++ +    F           +NN++A +  + +      ++LDL +NNL+  
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 606 ----GTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPK 661
                        K  S L +LNL  N  +  +   +F     L+I+DL  N L  +   
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 662 SLANCNMLQVLDLRSNYISDNFPCWLRNA-SSLQVLVLRSNNFSG 705
              N   L+ L+L+ N I+         A  +L  L +R N F  
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  268 bits (688), Expect = 2e-78
 Identities = 130/656 (19%), Positives = 219/656 (33%), Gaps = 64/656 (9%)

Query: 66  LQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSG 125
              +  LNL     +     +     + LT L++     +   P     L  L  L+L  
Sbjct: 24  PTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 126 ---IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSL 182
                  + +               T LTELHL    +               NL  L L
Sbjct: 83  NELSQLSDKT-----------FAFCTNLTELHLMSNSIQKIKNN---PFVKQKNLITLDL 128

Query: 183 SGCDLSGPINHYLAKSRSLSVIRLHYNY--GLSSGTEFLAHLTNLKALDLSECGLQGKFP 240
           S   LS        +  +L  + L  N    L S    +   ++LK L+LS   ++   P
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188

Query: 241 EKILHVPTLETLDLSINQL---LQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLE-- 295
                +  L  L L+  QL   L   L     N+S+R+L LS++ LS T   +   L+  
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248

Query: 296 NLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPS----------LHKSRNLN 345
           NLT +++S  N       S A L QL +     N+                 L+  R+  
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 346 NLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFEN 405
              +S  +L      +F   L  L+ + +  N + G        L NL+ L LSN+    
Sbjct: 309 KQSISLASLPKIDDFSFQ-WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

Query: 406 QLPEI---SNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSK 462
           +        +++ S L  L+L+ N++        F  L +L  LDL  N+  +       
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIES-DAFSWLGHLEVLDLGLNEIGQELTGQE- 425

Query: 463 PRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSI-- 520
                  +    +  + +S N+      N    V   +L+ L L    + ++    S   
Sbjct: 426 ------WRGLENIFEIYLSYNKYLQLTRNSFALV--PSLQRLMLRRVALKNVDSSPSPFQ 477

Query: 521 --SGIRFLDLHSNQLRGNIPYMSPNTS---YVDYSNNNFTSIPAD------IGNFMSETE 569
               +  LDL +N +      M         +D  +NN   +         I      + 
Sbjct: 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537

Query: 570 YFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNN 629
                  +N    +  E        +++DL  NNL+    +    + S  L+ LNL +N 
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS--LKSLNLQKNL 595

Query: 630 LNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPC 685
           +         P    L  LD+  N             N +         +S ++ C
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLC 651

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  157 bits (398), Expect = 7e-40
 Identities = 86/497 (17%), Positives = 163/497 (32%), Gaps = 98/497 (19%)

Query: 46  LDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFA 105
           LDLS+  +     ++     L  L+   L +   +       L  L N+ YLNL +    
Sbjct: 253 LDLSYNNLNVVGNDS--FAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKR---- 305

Query: 106 GEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGT 165
                                            + +    +L  L ++            
Sbjct: 306 ---------------------------------SFTKQSISLASLPKIDDF--------- 323

Query: 166 EWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNY----GLSSGTEFLAH 221
               +  +L  L+ L++   D+ G  ++      +L  + L  ++     L++ T     
Sbjct: 324 ----SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 222 LTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPN-FPKNSSLRDLILSH 280
            + L  L+L++  +     +    +  LE LDL +N++ Q      +    ++ ++ LS+
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 281 TGLSGTLPDSIGNLENLTRVEVSSCNFTG--PIPPSMANLTQLFHMDFSSNHFFGPIPS- 337
                   +S   + +L R+ +           P     L  L  +D S+N+        
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

Query: 338 LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQ 397
           L     L  LDL  NNL+                  L  ++  G     L  L +L +L 
Sbjct: 500 LEGLEKLEILDLQHNNLA-----------------RLWKHANPGGPIYFLKGLSHLHILN 542

Query: 398 LSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLK 457
           L +N F+    E+       L  +DL  N L   +P S+F    +L +L+L  N  + ++
Sbjct: 543 LESNGFDEIPVEVFKDLFE-LKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 458 LASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQE- 516
                            L+ LD+  N       +  W      + ++N +H  +  L   
Sbjct: 601 KKV-------FGPAFRNLTELDMRFNPFDCTCESIAW-----FVNWINETHTNIPELSSH 648

Query: 517 -----PYSISGIRFLDL 528
                P    G      
Sbjct: 649 YLCNTPPHYHGFPVRLF 665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.4 bits (243), Expect = 6e-21
 Identities = 48/265 (18%), Positives = 91/265 (34%), Gaps = 31/265 (11%)

Query: 617 SSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRS 676
           + + EV +     L   + D +      + +L+L+ NQL+ +   +    + L  LD+  
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDLPT---NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 677 NYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQK 736
           N IS   P   +    L+VL L+ N  S      +       L  + L  N     +   
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLS--DKTFAFCTNLTELHLMSNSIQK-IKNN 115

Query: 737 WLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNN 796
             +            +  L +    N                  +++ N+   +  S+N 
Sbjct: 116 PFVKQ--------KNLITLDLS--HNGLSST--------KLGTQVQLENL-QELLLSNNK 156

Query: 797 FEGPIPVEMGRF--RSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLA 854
            +     E+  F   SL  L +S N +    P  F  +  +  L L+   L   +  +L 
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 855 ---SLNFLSVLNLSYNNLVGKIPTS 876
              +   +  L+LS + L     T+
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTT 241

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  269 bits (691), Expect = 2e-79
 Identities = 125/586 (21%), Positives = 218/586 (37%), Gaps = 43/586 (7%)

Query: 198 SRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSIN 257
             S   + L +N     G+        L+ LDLS C +Q         +  L TL L+ N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 258 QLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTG-PIPPSMA 316
            +   +L  F   SSL+ L+   T L+      IG+L+ L  + V+        +P   +
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 317 NLTQLFHMDFSSNHFFGPIPSL-----HKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQI 371
           NLT L H+D SSN       +             +LDLS N ++      F  + + L  
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHK 204

Query: 372 VVLGHNSLSGSIPRSLFL-LPNLEMLQLSNNQFENQ-------LPEISNVSSSVLFDLDL 423
           + L +N  S ++ ++    L  LE+ +L   +F N+          +  + +  + +  L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 424 SGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDN 483
           +         I +F  L N+ +  L S    R          +           L++ + 
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER----------VKDFSYNFGWQHLELVNC 314

Query: 484 QISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQL--RGNIPYMS 541
           +        +      +LK L  + N   +      +  + FLDL  N L  +G      
Sbjct: 315 KFGQFPTLKL-----KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 542 PNTS---YVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESV-CKATNFQVL 597
             T+   Y+D S N   ++ ++        E+  F   +++L  +   SV     N   L
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQ-LEHLDF--QHSNLKQMSEFSVFLSLRNLIYL 426

Query: 598 DLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQG 657
           D+S+ +              S+LEVL +  N+        IF     L  LDLS  QL+ 
Sbjct: 427 DISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 658 VVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWP 717
           + P +  + + LQVL++  N          +  +SLQVL    N+               
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-S 543

Query: 718 LLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQ 763
            L  ++L  N F+     +  L  +  + +   EV  +    PS++
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  240 bits (614), Expect = 8e-69
 Identities = 106/649 (16%), Positives = 209/649 (32%), Gaps = 65/649 (10%)

Query: 221 HLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSH 280
            + N+      E     K P+ +    + + LDLS N L      +F     L+ L LS 
Sbjct: 6   VVPNITY-QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 281 TGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP-SLH 339
             +      +  +L +L+ + ++          + + L+ L  +     +        + 
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 340 KSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLS 399
             + L  L+++ N +       ++  L NL+ + L  N +       L +L  + +L LS
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 400 NNQFENQLPEI--SNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLK 457
            +   N +  I         L  L L  N     V  +    L  L    L   +F    
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 458 LASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWE-VGSGNLKFLNLSHNLVVSLQE 516
                      L+    L++ +     +   + + I       N+   +L    +  +++
Sbjct: 242 NLEKFD--KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 517 PYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAA 576
                G + L+L + +          +   + +++N   +  +++   +   E+      
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD--LPSLEFLDLSRN 357

Query: 577 NNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSD 636
             S  G   +S    T+ + LDLS N +       L       LE L+   +NL      
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEF 414

Query: 637 TIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNF-PCWLRNASSLQV 695
           ++F     L  LD+S    +          + L+VL +  N   +NF P       +L  
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 696 LVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHL 755
           L L           P    S   LQ+++++ N F   L       +           N L
Sbjct: 475 LDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCL-----------NSL 520

Query: 756 GIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGR-FRSLYAL 814
                                             +D+S N+       E+     SL  L
Sbjct: 521 --------------------------------QVLDYSLNHIMTSKKQELQHFPSSLAFL 548

Query: 815 NMSHNALTGSIPSS--FGNLKEIESLDLSMNNLSGKIPAQLASLNFLSV 861
           N++ N    +         +K+   L + +  +    P+    +  LS+
Sbjct: 549 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  217 bits (554), Expect = 1e-60
 Identities = 102/591 (17%), Positives = 190/591 (32%), Gaps = 88/591 (14%)

Query: 296 NLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP-SLHKSRNLNNLDLSFNNL 354
           +   +++S          S  +  +L  +D S          +     +L+ L L+ N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 355 SGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVS 414
                  F   L +LQ +V    +L+      +  L  L+ L +++N  ++        +
Sbjct: 89  QSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 415 SSVLFDLDLSGNRLEGPVPISIFFELRNL----YTLDLSSNKFSRLKLASSKPRAIPILK 470
            + L  LDLS N+++          L  +     +LDLS N  + +          P   
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNFI---------QPGAF 197

Query: 471 NQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHS 530
            + +L  L + +N  S  V     + G   L+   L      +              L +
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 531 NQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCK 590
             +           +Y+DY  ++   +   + N         F   + ++  V   S   
Sbjct: 257 LTIEEF------RLAYLDYYLDDIIDLFNCLTNVS------SFSLVSVTIERVKDFSYN- 303

Query: 591 ATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDL 650
              +Q L+L N            T    +L+ L    N      S+   P    L+ LDL
Sbjct: 304 -FGWQHLELVNCKFGQ-----FPTLKLKSLKRLTFTSNKGGNAFSEVDLPS---LEFLDL 354

Query: 651 SGNQLQ--GVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHIS 708
           S N L   G   +S      L+ LDL  N +             L+ L  + +N      
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 709 CPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVR 768
                +S   L  +D++                                   +  F    
Sbjct: 414 -FSVFLSLRNLIYLDISHTHTRV---------------------------AFNGIFN--- 442

Query: 769 VTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPI-PVEMGRFRSLYALNMSHNALTGSIPS 827
                         + ++   +  + N+F+    P      R+L  L++S   L    P+
Sbjct: 443 -------------GLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 828 SFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQ 878
           +F +L  ++ L++S NN           LN L VL+ S N+++       Q
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  192 bits (490), Expect = 3e-52
 Identities = 103/463 (22%), Positives = 170/463 (36%), Gaps = 45/463 (9%)

Query: 63  LFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRL---- 118
           +  L+ L+ LN+   L + F++P    NLTNL +L+LS         T++  L ++    
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 119 VTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQ 178
           ++LDLS            +  +         L +L L     S +  + C  +  L  L+
Sbjct: 180 LSLDLSL---------NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC--IQGLAGLE 228

Query: 179 VLSLSGCDLSG------PINHYLAKSRSLSVIRLHYNYG---LSSGTEFLAHLTNLKALD 229
           V  L   +              L    +L++      Y    L    +    LTN+ +  
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 230 LSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPD 289
           L    ++             + L+L   +  Q     FP         L+ T   G    
Sbjct: 289 LVSVTIERVKDFSYN--FGWQHLELVNCKFGQ-----FPTLKLKSLKRLTFTSNKGGNAF 341

Query: 290 SIGNLENLTRVEVS--SCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNL 347
           S  +L +L  +++S    +F G    S    T L ++D S N       +      L +L
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401

Query: 348 DLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQL 407
           D   +NL      + +  L NL  + + H     +       L +LE+L+++ N F+   
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 408 PEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIP 467
                     L  LDLS  +LE  +  + F  L +L  L++S N F  L           
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSL---------DT 511

Query: 468 -ILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN 509
              K  + L VLD S N I       +    S +L FLNL+ N
Sbjct: 512 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS-SLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  170 bits (432), Expect = 1e-44
 Identities = 91/542 (16%), Positives = 152/542 (28%), Gaps = 108/542 (19%)

Query: 341 SRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSN 400
             +  NLDLSFN L    S +F+     LQ++ L    +      +   L +L  L L+ 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 401 NQFENQLPE-ISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLA 459
           N  ++      S +SS  L  L      L           L+ L  L+++ N     KL 
Sbjct: 86  NPIQSLALGAFSGLSS--LQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLP 142

Query: 460 SSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYS 519
                      N + L  LD+S N+I       +       +  LNLS            
Sbjct: 143 EY-------FSNLTNLEHLDLSSNKIQSIYCTDL--RVLHQMPLLNLS------------ 181

Query: 520 ISGIRFLDLHSNQLRGNIPY--MSPNTSYVDYSNNNFT-SIPADIGNFMSETEYFYFVAA 576
                 LDL  N +    P          +   NN  + ++       ++  E    V  
Sbjct: 182 ------LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 577 NNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSD 636
                                  +  NL     + L    + T+E   L   +       
Sbjct: 236 EFR--------------------NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 637 TIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVL 696
            +F     +    L    ++ V     +     Q L+L +          L++   L   
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 333

Query: 697 VLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLG 756
             +  N    +  P        L+ +DL+ N  S                          
Sbjct: 334 SNKGGNAFSEVDLPS-------LEFLDLSRNGLSF------------------------- 361

Query: 757 IEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNM 816
                            KG   +          +D S N     +         L  L+ 
Sbjct: 362 -----------------KGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403

Query: 817 SHNALTGSIPSS-FGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 875
            H+ L      S F +L+ +  LD+S  +           L+ L VL ++ N+       
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 876 ST 877
             
Sbjct: 464 DI 465

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  170 bits (432), Expect = 1e-44
 Identities = 90/418 (21%), Positives = 141/418 (33%), Gaps = 26/418 (6%)

Query: 46  LDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFA 105
           LDLS  P+        G F    L  L L         + + +  L  L    L  G F 
Sbjct: 182 LDLSLNPMNF---IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 106 GEI---PTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSA 162
            E      + S+L  L  L +         Y +   ++      LT ++   L  V +  
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD--DIIDLFNCLTNVSSFSLVSVTIER 296

Query: 163 SGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHL 222
                 K  S+    Q L L  C         L   + L+          S        L
Sbjct: 297 V-----KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDL 346

Query: 223 TNLKALDLSECGLQ--GKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSH 280
            +L+ LDLS  GL   G   +      +L+ LDLS N  +     NF     L  L   H
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQH 405

Query: 281 TGLSGTLPDSI-GNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP--S 337
           + L      S+  +L NL  +++S  +           L+ L  +  + N F        
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 338 LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQ 397
             + RNL  LDLS   L     + F   L +LQ++ + HN+           L +L++L 
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 524

Query: 398 LSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFE-LRNLYTLDLSSNKFS 454
            S N       +      S L  L+L+ N          F + +++   L +   +  
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  144 bits (365), Expect = 5e-36
 Identities = 90/522 (17%), Positives = 147/522 (28%), Gaps = 131/522 (25%)

Query: 371 IVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPE-ISNVSSSVLFDLDLSGNRLE 429
                  +    IP +L    + + L LS N   +       +     L  LDLS   ++
Sbjct: 11  TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPE--LQVLDLSRCEIQ 65

Query: 430 GPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEV 489
                  +  L +L TL L+ N    L        A+      S L  L   +  ++   
Sbjct: 66  TIED-GAYQSLSHLSTLILTGNPIQSL--------ALGAFSGLSSLQKLVAVETNLASLE 116

Query: 490 PNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISG---IRFLDLHSNQLRGNIPYMSPNTSY 546
              I       LK LN++HNL+ S + P   S    +  LDL SN+++            
Sbjct: 117 NFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS----------- 163

Query: 547 VDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSG 606
                        D+                                   LDLS N ++ 
Sbjct: 164 ---------IYCTDLRVLHQ-----------------------MPLLNLSLDLSLNPMNF 191

Query: 607 TIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQG------VVP 660
             P          L  L L  N  +  +  T   G  GL++  L   + +          
Sbjct: 192 IQPGAF---KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 661 KSLANCNMLQVLDLRSNYIS---DNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWP 717
            +L     L + + R  Y+    D+        +++    L S           N     
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN----F 304

Query: 718 LLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIE 777
             Q ++L   KF        L ++                                    
Sbjct: 305 GWQHLELVNCKFGQ-FPTLKLKSL------------------------------------ 327

Query: 778 IKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALT--GSIPSSFGNLKEI 835
                       + F+SN              SL  L++S N L+  G    S      +
Sbjct: 328 ----------KRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 836 ESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTST 877
           + LDLS N +   + +    L  L  L+  ++NL      S 
Sbjct: 376 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  122 bits (309), Expect = 4e-29
 Identities = 71/404 (17%), Positives = 140/404 (34%), Gaps = 37/404 (9%)

Query: 500 NLKFLNLSHNLVVSLQEPYSI-SGIRFLDLHSNQLRGNIPYMSPNTS---YVDYSNNNFT 555
           N+ +  +  N     + P ++    + LDL  N LR    Y   +      +D S     
Sbjct: 9   NITYQCMELNF---YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 556 SIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITK 615
           +I       +S           N +  +   +    ++ Q L     NL+      +   
Sbjct: 66  TIEDGAYQSLSHLSTLIL--TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--G 121

Query: 616 SSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV---- 671
              TL+ LN+  N +        F     L+ LDLS N++Q +    L   + + +    
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 672 LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSG 731
           LDL  N ++   P   +    L  L LR+N  S ++           L++  L   +F  
Sbjct: 182 LDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVM-KTCIQGLAGLEVHRLVLGEFRN 239

Query: 732 RLSQKWL-------LTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVP 784
             + +         L  +  E    + +++   ++  + F  +    +   + + + +V 
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVTIERVK 298

Query: 785 NIF-----TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLD 839
           +         ++  +  F     +++   + L        +  G    S  +L  +E LD
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT-----FTSNKGGNAFSEVDLPSLEFLD 353

Query: 840 LSMNNLS--GKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQS 881
           LS N LS  G           L  L+LS+N ++        L+ 
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.5 bits (181), Expect = 2e-13
 Identities = 46/237 (19%), Positives = 79/237 (33%), Gaps = 39/237 (16%)

Query: 62  GLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTL 121
               L+ L+ L+   +  K     S   +L NL YL++S            + L+ L  L
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 122 DLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLS 181
            ++G             N      +  E     +                + L NL  L 
Sbjct: 451 KMAG-------------N------SFQENFLPDI---------------FTELRNLTFLD 476

Query: 182 LSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPE 241
           LS C L            SL V+ + +N   S  T     L +L+ LD S   +     +
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

Query: 242 KILHVPT-LETLDLSINQLLQGSLPN--FPKN-SSLRDLILSHTGLSGTLPDSIGNL 294
           ++ H P+ L  L+L+ N     +  +  F +     R L++    +    P     +
Sbjct: 537 ELQHFPSSLAFLNLTQND-FACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 592

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  253 bits (649), Expect = 2e-73
 Identities = 98/690 (14%), Positives = 214/690 (31%), Gaps = 125/690 (18%)

Query: 11  SGFPSTKLSQWSSHQSSD-CCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYL 69
            GF +   + W+ ++  D      GV  +  G V GL L      G + +A  +  L  L
Sbjct: 50  QGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA--IGQLTEL 107

Query: 70  QSLNLGFTLFKGFQ---IPSRLGNLTNLTYLNLSQGGFAGEIPTEIS--SLTRLVTLDLS 124
           + L LG    K  +    P  +    +       +  +             + L+   ++
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167

Query: 125 GIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSG 184
                         ++    +   + T++     ++    T   KA+  L  L+   +  
Sbjct: 168 SDPQQ--------KSIKKSSRITLKDTQIGQLSNNI----TFVSKAVMRLTKLRQFYMGN 215

Query: 185 CDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKIL 244
                       ++ +       Y     +      +L +L  +++  C    K P  + 
Sbjct: 216 SPFVAENICEAWENENSE-----YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270

Query: 245 HVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSS 304
            +P ++ ++++ N+ + G                                E +  + +  
Sbjct: 271 ALPEMQLINVACNRGISGEQLK----------------DDWQALADAPVGEKIQIIYIGY 314

Query: 305 CNF-TGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFW 363
            N  T P+  S+  + +L  ++   N   G +P+      L +L+L++N ++  I + F 
Sbjct: 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-IPANFC 373

Query: 364 EQLLNLQIVVLGHNSLSGSIPRSLFL--LPNLEMLQLSNNQFE----NQLPEISNVSSSV 417
                ++ +   HN L   IP       +  +  +  S N+           +       
Sbjct: 374 GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 418 --LFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQL 475
             +  ++LS N++       +F     L +++L  N  + +   S K       KN   L
Sbjct: 433 INVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPKNSLKD-ENENFKNTYLL 490

Query: 476 SVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRG 535
           + +D+  N+++  + +   +  +  L +L                     +DL       
Sbjct: 491 TSIDLRFNKLTK-LSD---DFRATTLPYL-------------------VGIDL------- 520

Query: 536 NIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQ 595
                         S N+F+  P    N  +      F   N                  
Sbjct: 521 --------------SYNSFSKFPTQPLNSSTLK---GFGIRNQ----------------- 546

Query: 596 VLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQL 655
             D   N      P  +      +L  L +G N++   +++ I P    + +LD+  N  
Sbjct: 547 -RDAQGNRTLREWPEGI--TLCPSLTQLQIGSNDIR-KVNEKITPN---ISVLDIKDNPN 599

Query: 656 QGVVPKSLANCNMLQVLDLRSNYISDNFPC 685
             +    +       +  L  +   D   C
Sbjct: 600 ISIDLSYVCPYIEAGMYMLFYDKTQDIRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  240 bits (614), Expect = 2e-68
 Identities = 96/667 (14%), Positives = 191/667 (28%), Gaps = 142/667 (21%)

Query: 222 LTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHT 281
              +  L L   G  G+ P+ I  +  LE L L  +                        
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL---------------- 123

Query: 282 GLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMA--NLTQLFHMDFSSNHFFGPIPSL- 338
                 P  I    +  + +    ++           + + L     +S+     I    
Sbjct: 124 ----FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 339 HKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQL 398
             +     +    NN++  +S     +L  L+   +G++          +   N E    
Sbjct: 180 RITLKDTQIGQLSNNITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEY--- 234

Query: 399 SNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKL 458
              Q++ +  +  N+    L D+++        +P  +   L  +  ++++ N+    + 
Sbjct: 235 -AQQYKTEDLKWDNLKD--LTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQ 290

Query: 459 ASSKPRAIPILKNQSQLSVLDISDNQI-SGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEP 517
                +A+       ++ ++ I  N + +  V   +       +K L             
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL-----QKMKKL------------- 332

Query: 518 YSISGIRFLDLHSNQLRGNIPYMSPNTS--YVDYSNNNFTSIPADIGNFMSETEYFYFVA 575
                   L+   NQL G +P          ++ + N  T IPA+   F           
Sbjct: 333 ------GMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFT---------- 376

Query: 576 ANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLS 635
                              + L  ++N L   IP     KS S +  ++   N +     
Sbjct: 377 ----------------EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 636 DTIFPGDCG------LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISD-------N 682
               P D        +  ++LS NQ+     +  +  + L  ++L  N +++       +
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479

Query: 683 FPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMM 742
                +N   L  + LR N  +  +S      + P L  +DL+ N FS            
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK----------- 527

Query: 743 VAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIP 802
                            P+                   LK   I    D   N      P
Sbjct: 528 ----------------FPTQPL------------NSSTLKGFGIRNQRDAQGNRTLREWP 559

Query: 803 VEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVL 862
             +    SL  L +  N +   +         I  LD+  N       + +       + 
Sbjct: 560 EGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMY 616

Query: 863 NLSYNNL 869
            L Y+  
Sbjct: 617 MLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  176 bits (447), Expect = 2e-46
 Identities = 72/544 (13%), Positives = 163/544 (29%), Gaps = 99/544 (18%)

Query: 353 NLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISN 412
           ++ G            +  + L     SG +P ++  L  LE+                 
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEV----------------- 109

Query: 413 VSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQ 472
                   L L  +  +    +     +    + +       R+    +     P   + 
Sbjct: 110 --------LALGSHGEKVNERLFGPKGISANMSDEQKQK--MRMHYQKTFVDYDPRE-DF 158

Query: 473 SQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGI---RFLDLH 529
           S L    I+ +     +        +     +    N +  +    ++  +   R   + 
Sbjct: 159 SDLIKDCINSDPQQKSIKKSS--RITLKDTQIGQLSNNITFV--SKAVMRLTKLRQFYMG 214

Query: 530 SNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVC 589
           ++         +      +Y    + +      N + +         N      +P  + 
Sbjct: 215 NSPFVAENICEAWENENSEY-AQQYKTEDLKWDN-LKDLTDVEV--YNCPNLTKLPTFLK 270

Query: 590 KATNFQVLDLSNNNLSG--TIPACLITKSS----STLEVLNLGRNNL-NGTLSDTIFPGD 642
                Q+++++ N       +       +       ++++ +G NNL    +  ++    
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL--QK 328

Query: 643 CG-LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSN 701
              L +L+   NQL+G +P +  +   L  L+L  N I++    +      ++ L    N
Sbjct: 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387

Query: 702 NFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPS 761
                I    +  S  ++  +D + N+                              +  
Sbjct: 388 KLKY-IPNIFDAKSVSVMSAIDFSYNEIGS---------------------------VDG 419

Query: 762 NQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNAL 821
             F           ++    K  N+ +SI+ S+N               L ++N+  N L
Sbjct: 420 KNF---------DPLDPTPFKGINV-SSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469

Query: 822 TG-------SIPSSFGNLKEIESLDLSMNNLSGKIPAQLA--SLNFLSVLNLSYNNLVGK 872
           T            +F N   + S+DL  N L+  +       +L +L  ++LSYN+    
Sbjct: 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK- 527

Query: 873 IPTS 876
            PT 
Sbjct: 528 FPTQ 531

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  169 bits (431), Expect = 3e-44
 Identities = 74/601 (12%), Positives = 161/601 (26%), Gaps = 152/601 (25%)

Query: 303 SSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTF 362
            + +  G      AN      +D        P  SL+ +  +  L L     SG +    
Sbjct: 45  KNWSQQGFGTQPGANWNFNKELDMWGAQ---PGVSLNSNGRVTGLSLEGFGASGRVPDAI 101

Query: 363 WEQLLNLQIVVLGHNSLSG----SIPRSLFLLPNLEMLQLSNNQFE-NQLPEISNVSSSV 417
             QL  L+++ LG +          P+ +    + E  Q     ++   +        S 
Sbjct: 102 G-QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 418 LFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSV 477
           L    ++ +  +  +  S    L++   +   SN  + +       +A+           
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQ-IGQLSNNITFV------SKAV----------- 202

Query: 478 LDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNI 537
                                  L  L                   R   + ++      
Sbjct: 203 ---------------------MRLTKL-------------------RQFYMGNSPFVAEN 222

Query: 538 PYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVL 597
              +      +Y    + +      N + +         N      +P  +      Q++
Sbjct: 223 ICEAWENENSEY-AQQYKTEDLKWDN-LKDLTDVEV--YNCPNLTKLPTFLKALPEMQLI 278

Query: 598 DLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQG 657
           +++ N          +      L    +G                  +QI+ +  N L+ 
Sbjct: 279 NVACNRGISGEQ---LKDDWQALADAPVGEK----------------IQIIYIGYNNLKT 319

Query: 658 V-VPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSW 716
             V  SL     L +L+   N +    P    +   L  L L  N  +   +        
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGF--T 376

Query: 717 PLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGI 776
             ++ +  A NK              +        V+ +                     
Sbjct: 377 EQVENLSFAHNKLKY-----------IPNIFDAKSVSVM--------------------- 404

Query: 777 EIKLLKVPNIFTSIDFSSNNFEG-------PIPVEMGRFRSLYALNMSHNALTGSIPSSF 829
                      ++IDFS N           P+     +  ++ ++N+S+N ++      F
Sbjct: 405 -----------SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453

Query: 830 GNLKEIESLDLSMNNLSG-------KIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSF 882
                + S++L  N L+               +   L+ ++L +N L   +    +  + 
Sbjct: 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTL 512

Query: 883 S 883
            
Sbjct: 513 P 513

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.0 bits (229), Expect = 3e-19
 Identities = 31/250 (12%), Positives = 75/250 (30%), Gaps = 30/250 (12%)

Query: 645 LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDN----FPCWLRNASSLQVLVLRS 700
           +  L L G    G VP ++     L+VL L S+    N     P  +    S +      
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 701 NNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMP 760
            ++         +  +  L    +  +     + +   +T+               I   
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL-----------KDTQIGQL 191

Query: 761 SNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNA 820
           SN             +   ++++  +       ++ F      E     +       +  
Sbjct: 192 SNNI---------TFVSKAVMRLTKL-RQFYMGNSPFVAENICEAWENENS-----EYAQ 236

Query: 821 LTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQ 880
              +    + NLK++  +++       K+P  L +L  + ++N++ N  +         Q
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 881 SFSPTSYEGN 890
           + +       
Sbjct: 297 ALADAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 2e-08
 Identities = 14/116 (12%), Positives = 29/116 (25%), Gaps = 7/116 (6%)

Query: 788 TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTG----SIPSSFGNLKEIESLDLSMN 843
           T +        G +P  +G+   L  L +  +          P         E       
Sbjct: 84  TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143

Query: 844 NLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLT 899
           +            +F    +L  + +       +  +S   T  +   G     +T
Sbjct: 144 HYQKTFVDYDPREDFS---DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  236 bits (604), Expect = 2e-67
 Identities = 97/549 (17%), Positives = 181/549 (32%), Gaps = 52/549 (9%)

Query: 170 ALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALD 229
             S L NL  L L+ C +             L  + L  N  +      L+    LK L 
Sbjct: 52  TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111

Query: 230 LSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPD 289
             + G+       + +  TLE+L L  N +    LP       L+ L   +  +     +
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171

Query: 290 SIGNLENLTRVEVS-SCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP---SLHKSRNLN 345
            + +L+  T + ++ + N    I P   +      ++F        I         ++L 
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231

Query: 346 NLDLSFNNLSGGISSTFWE-QLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFE 404
                  +      + F     ++++ + L  +        +      L+ L L+     
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291

Query: 405 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPR 464
                +  +S+  L  L LS N+ E  +         +L  L +  N     K       
Sbjct: 292 ELPSGLVGLST--LKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNT----KRLELGTG 344

Query: 465 AIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISG-- 522
            +  L+N   L  LD+S + I       +      +L+ LNLS+N  +SL +  +     
Sbjct: 345 CLENLEN---LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECP 400

Query: 523 -IRFLDLHSNQLRGNIPYMS----PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAAN 577
            +  LDL   +L+                ++ S++                         
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS------------------- 441

Query: 578 NSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACL-ITKSSSTLEVLNLGRNNLNGTLSD 636
                   +        Q L+L  N+            ++   LE+L L   +L+  +  
Sbjct: 442 -------EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQ 493

Query: 637 TIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVL 696
             F     +  +DLS N+L     ++L++   +  L+L SN+IS   P  L   S  + +
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI 552

Query: 697 VLRSNNFSG 705
            LR N    
Sbjct: 553 NLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  208 bits (531), Expect = 1e-57
 Identities = 108/632 (17%), Positives = 216/632 (34%), Gaps = 75/632 (11%)

Query: 250 ETLDLSINQLLQ--GSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNF 307
           +T +     L +  G+LP     +S   L  S   L      +   L NLT ++++ C  
Sbjct: 15  KTYNCENLGLNEIPGTLP-----NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69

Query: 308 TGPIPPSMANLTQLFHMDFSSNHFFGPIP-SLHKSRNLNNLDLSFNNLSGGISSTFWEQL 366
                 +  +  +L  +  ++N        +L   + L +L      +S           
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPL-HNQ 128

Query: 367 LNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPE-ISNVSSSVLFDLDLSG 425
             L+ + LG N +S       F    L++L   NN       E +S++  +    L+L+G
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 426 NRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQI 485
           N + G +    F +     +L+    +   +     K   I        L +    D   
Sbjct: 189 NDIAG-IEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQ------SLWLGTFEDMDD 240

Query: 486 SGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEP--YSISGIRFLDLHSNQLRGNIPYMSPN 543
               P     +   +++ +NL  +   ++     +  SG++ LDL +  L      +   
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGL 300

Query: 544 TS--YVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSN 601
           ++   +  S N F ++     +      +      N     +    +    N + LDLS+
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSI-KGNTKRLELGTGCLENLENLRELDLSH 359

Query: 602 NNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPK 661
           +++  +    L  ++ S L+ LNL  N    +L    F     L++LDL+  +L+    +
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

Query: 662 S-LANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSW-PLL 719
           S   N ++L+VL+L  + +  +         +LQ L L+ N+F        N +     L
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478

Query: 720 QIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIK 779
           +I+ L+                                                  I+  
Sbjct: 479 EILVLS-----------------------------------FCDL---------SSIDQH 494

Query: 780 LLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLD 839
                 +   +D S N         +   + +Y LN++ N ++  +PS    L +  +++
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTIN 553

Query: 840 LSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 871
           L  N L          + FL     +   L  
Sbjct: 554 LRQNPLDCTCSN----IYFLEWYKENMQKLED 581

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  196 bits (500), Expect = 2e-53
 Identities = 98/507 (19%), Positives = 182/507 (35%), Gaps = 41/507 (8%)

Query: 65  DLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLS 124
               L +L L           + L     L +L   Q G +      + +   L +L L 
Sbjct: 79  SQHRLDTLVLTANPLIFM-AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG 137

Query: 125 G--IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQV--L 180
              I  I          L        +L  L      +     E    +S L       L
Sbjct: 138 SNHISSI---------KLPKG-FPTEKLKVLDFQNNAIHYLSKE---DMSSLQQATNLSL 184

Query: 181 SLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAH--LTNLKALDLSECGLQG- 237
           +L+G D++G I      S     +       L    + L +  + +L      +   +  
Sbjct: 185 NLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 238 -KFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLEN 296
                + L   ++E+++L  +     S   F   S L++L L+ T LS  LP  +  L  
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLST 302

Query: 297 LTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPS--LHKSRNLNNLDLSFNNL 354
           L ++ +S+  F      S +N   L H+    N     + +  L    NL  LDLS +++
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362

Query: 355 SG-GISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNV 413
                 +     L +LQ + L +N        +    P LE+L L+  + + +  +    
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422

Query: 414 SSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQS 473
           +  +L  L+LS + L+      +F  L  L  L+L  N F +        +    L+   
Sbjct: 423 NLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKG-----NIQKTNSLQTLG 476

Query: 474 QLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIR--FLDLHSN 531
           +L +L +S   +S    +         +  ++LSHN + S     ++S ++  +L+L SN
Sbjct: 477 RLEILVLSFCDLSSIDQHAF--TSLKMMNHVDLSHNRLTSSS-IEALSHLKGIYLNLASN 533

Query: 532 QLRGNIPYM---SPNTSYVDYSNNNFT 555
            +   +P +         ++   N   
Sbjct: 534 HISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  185 bits (471), Expect = 1e-49
 Identities = 92/547 (16%), Positives = 171/547 (31%), Gaps = 94/547 (17%)

Query: 341 SRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSN 400
             +   L+ SFN L    ++TF  +L+NL  + L    +      +      L+ L L+ 
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTF-SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 401 NQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLAS 460
           N     + E +      L  L      +   +        + L +L L SN  S +KL  
Sbjct: 91  NPLIF-MAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKL-- 146

Query: 461 SKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQ-EPYS 519
                 P      +L VLD  +N I       +  +       LNL+ N +  ++   + 
Sbjct: 147 ------PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200

Query: 520 ISGIRFLDLHSNQLRGNIPYMSPNTS-----YVDYSNNNFTSIPADIGNFMSETEYFYFV 574
            +  + L+    Q    I     N++        + + +   I   +             
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV------------- 247

Query: 575 AANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTL 634
                             + + ++L  +               S L+ L+L   +L+   
Sbjct: 248 -----------FEGLCEMSVESINLQKHYFFNISSNTF--HCFSGLQELDLTATHLSELP 294

Query: 635 SDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDN-FPCWLRNASSL 693
           S     G   L+ L LS N+ + +   S +N   L  L ++ N          L N  +L
Sbjct: 295 SG--LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 694 QVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVN 753
           + L L  ++      C     +   LQ ++L+ N+                         
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS---------------------- 390

Query: 754 HLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEG-PIPVEMGRFRSLY 812
                + +  F                 + P +   +D +    +             L 
Sbjct: 391 -----LKTEAF----------------KECPQL-ELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 813 ALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKI---PAQLASLNFLSVLNLSYNNL 869
            LN+SH+ L  S    F  L  ++ L+L  N+           L +L  L +L LS+ +L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 870 VGKIPTS 876
                 +
Sbjct: 489 SSIDQHA 495

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  171 bits (436), Expect = 4e-45
 Identities = 88/489 (17%), Positives = 164/489 (33%), Gaps = 45/489 (9%)

Query: 394 EMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKF 453
           +     N    N++P    + +S    L+ S N L   +  + F  L NL  LDL+  + 
Sbjct: 15  KTYNCENLGL-NEIP--GTLPNSTEC-LEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQI 69

Query: 454 SRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVS 513
             +   +         ++Q +L  L ++ N +       +   G   LK L      + S
Sbjct: 70  YWIHEDT--------FQSQHRLDTLVLTANPLIFMAETALS--GPKALKHLFFIQTGISS 119

Query: 514 LQEPY--SISGIRFLDLHSNQLRGNIPYMSPNTS---YVDYSNNNFTSIPADIGNFMSET 568
           +      +   +  L L SN +          T     +D+ NN    +  +  + + + 
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179

Query: 569 EYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRN 628
                    N +   I      +  FQ L+         I   L   +  +L +      
Sbjct: 180 TNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 629 NLNGTLSDTIFPGDCG--LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCW 686
           +    +S  +F G C   ++ ++L  +    +   +    + LQ LDL + ++S   P  
Sbjct: 239 DDE-DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG 296

Query: 687 LRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAET 746
           L   S+L+ LVL +N F     C  +  ++P L  + +  N     L    L  +     
Sbjct: 297 LVGLSTLKKLVLSANKFEN--LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354

Query: 747 KSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMG 806
              S  +    +  + Q                   + ++  S++ S N           
Sbjct: 355 LDLSHDDIETSDCCNLQLR----------------NLSHL-QSLNLSYNEPLSLKTEAFK 397

Query: 807 RFRSLYALNMSHNALTGSIP-SSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLS 865
               L  L+++   L      S F NL  ++ L+LS + L          L  L  LNL 
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457

Query: 866 YNNLVGKIP 874
            N+      
Sbjct: 458 GNHFPKGNI 466

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  135 bits (343), Expect = 3e-33
 Identities = 49/356 (13%), Positives = 109/356 (30%), Gaps = 27/356 (7%)

Query: 524 RFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGV 583
           +  +  +  L      +  +T  +++S N   +I     + +    +         +  +
Sbjct: 15  KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDL--TRCQIYWI 72

Query: 584 IPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDC 643
             ++         L L+ N L       L       L+ L   +  ++  +         
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETAL--SGPKALKHLFFIQTGISS-IDFIPLHNQK 129

Query: 644 GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLR-SNN 702
            L+ L L  N +  +          L+VLD ++N I       + +      L L  + N
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 703 FSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHL-GIEMPS 761
               I          + Q ++    +            +++ +    S +  L       
Sbjct: 190 DIAGI--EPGAFDSAVFQSLNFGGTQ----------NLLVIFKGLKNSTIQSLWLGTFED 237

Query: 762 NQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNAL 821
               ++   V     E+ +        SI+   + F          F  L  L+++   L
Sbjct: 238 MDDEDISPAVFEGLCEMSV-------ESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 822 TGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTST 877
           +  +PS    L  ++ L LS N          ++   L+ L++  N    ++ T  
Sbjct: 291 S-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  130 bits (330), Expect = 1e-31
 Identities = 71/320 (22%), Positives = 122/320 (38%), Gaps = 24/320 (7%)

Query: 66  LQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSG 125
              LQ L+L  T     ++PS L  L+ L  L LS   F        S+   L  L + G
Sbjct: 277 FSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334

Query: 126 ---IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSL 182
               + +           +  L+NL  L EL L   D+  S       L  L +LQ L+L
Sbjct: 335 NTKRLELG----------TGCLENLENLRELDLSHDDIETSDCC-NLQLRNLSHLQSLNL 383

Query: 183 SGCDLSGPINHYLAKSRSLSVIRLHYNY--GLSSGTEFLAHLTNLKALDLSECGLQGKFP 240
           S  +          +   L ++ L +       + + F  +L  LK L+LS   L     
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF-QNLHLLKVLNLSHSLLDISSE 442

Query: 241 EKILHVPTLETLDLSINQL---LQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENL 297
           +    +P L+ L+L  N           +      L  L+LS   LS     +  +L+ +
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502

Query: 298 TRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPS-LHKSRNLNNLDLSFNNLSG 356
             V++S    T     ++++L  + +++ +SNH    +PS L        ++L  N L  
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

Query: 357 GISSTFWEQLLNLQIVVLGH 376
             S+ ++ +     +  L  
Sbjct: 562 TCSNIYFLEWYKENMQKLED 581

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  123 bits (310), Expect = 3e-29
 Identities = 65/413 (15%), Positives = 144/413 (34%), Gaps = 46/413 (11%)

Query: 477 VLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISG---IRFLDLHSNQL 533
             +  +  ++ E+P  +      + + L  S N++ ++Q   + S    + FLDL   Q+
Sbjct: 16  TYNCENLGLN-EIPGTL----PNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQI 69

Query: 534 RGNIP---YMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCK 590
                           +  + N    +     +     ++ +F      ++ +    +  
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF--IQTGISSIDFIPLHN 127

Query: 591 ATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQI--L 648
               + L L +N++S           +  L+VL+   N ++  LS              L
Sbjct: 128 QKTLESLYLGSNHISSIKLPKG--FPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSL 184

Query: 649 DLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNAS--SLQVLVLRSNNFSGH 706
           +L+GN + G+      +  + Q L+             L+N++  SL +      +    
Sbjct: 185 NLNGNDIAGI-EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 707 ISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYE 766
                  +    ++ ++L  + F   +S          +           +++ +     
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQE----------LDLTATHL-- 290

Query: 767 VRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIP 826
                    +   L+ +  +   +  S+N FE    +    F SL  L++  N     + 
Sbjct: 291 -------SELPSGLVGLSTL-KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342

Query: 827 S-SFGNLKEIESLDLSMNNL--SGKIPAQLASLNFLSVLNLSYNNLVGKIPTS 876
           +    NL+ +  LDLS +++  S     QL +L+ L  LNLSYN  +     +
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.9 bits (247), Expect = 2e-21
 Identities = 56/302 (18%), Positives = 99/302 (32%), Gaps = 40/302 (13%)

Query: 588 VCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQI 647
           + K  N +  +  N  L+  IP  L     ++ E L    N L  T+ +T F     L  
Sbjct: 9   IEKEVN-KTYNCENLGLN-EIPGTL----PNSTECLEFSFNVLP-TIQNTTFSRLINLTF 61

Query: 648 LDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHI 707
           LDL+  Q+  +   +  + + L  L L +N +       L    +L+ L       S   
Sbjct: 62  LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121

Query: 708 SCP-RNKVSWPLLQIVDLACNKFSG---------------RLSQKWLLTMMVAETKSGSE 751
             P  N+ +   L+ + L  N  S                      +  +   +  S  +
Sbjct: 122 FIPLHNQKT---LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

Query: 752 VNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMG--RFR 809
             +L + +  N            GIE         F S++F        I   +     +
Sbjct: 179 ATNLSLNLNGNDI---------AGIEPGAFDSAV-FQSLNFGGTQNLLVIFKGLKNSTIQ 228

Query: 810 SLYALNMSHNALTGSIPSSFGNLKE--IESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 867
           SL+             P+ F  L E  +ES++L  +             + L  L+L+  
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288

Query: 868 NL 869
           +L
Sbjct: 289 HL 290

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.7 bits (184), Expect = 7e-14
 Identities = 39/269 (14%), Positives = 74/269 (27%), Gaps = 61/269 (22%)

Query: 621 EVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYIS 680
           +  N     LN  +  T+       + L+ S N L  +   + +    L  LDL    I 
Sbjct: 15  KTYNCENLGLN-EIPGTLPNS---TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 681 DNFPCWLRNASSLQVLVLRSNNFS----GHISCPRNKVSWPLLQIVDLACNKFSGRLSQK 736
                  ++   L  LVL +N         +S P+       L+ +       S      
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA------LKHLFFIQTGISS----- 119

Query: 737 WLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNN 796
                                 +     +                    +  S+   SN+
Sbjct: 120 ----------------------IDFIPLH----------------NQKTL-ESLYLGSNH 140

Query: 797 FEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIE--SLDLSMNNLSGKIPAQLA 854
                  +      L  L+  +NA+         +L++    SL+L+ N+++G I     
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAF 199

Query: 855 SLNFLSVLNLSYNNLVGKIPTSTQLQSFS 883
                  LN      +  I    +  +  
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 5e-12
 Identities = 49/214 (22%), Positives = 76/214 (35%), Gaps = 35/214 (16%)

Query: 46  LDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFA 105
           L+LS+   +     A    +   L+ L+L FT  K     S   NL  L  LNLS     
Sbjct: 381 LNLSYNEPLSLKTEA--FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 106 GEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGT 165
                    L  L  L+L G                    +  +      +         
Sbjct: 439 ISSEQLFDGLPALQHLNLQGN-------------------HFPKGNIQKTN--------- 470

Query: 166 EWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNL 225
               +L  L  L++L LS CDLS    H     + ++ + L +N   SS  E L+HL  +
Sbjct: 471 ----SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526

Query: 226 KALDLSECGLQGKFPEKILHVPTLETLDLSINQL 259
             L+L+   +    P  +  +    T++L  N L
Sbjct: 527 Y-LNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.2 bits (149), Expect = 1e-09
 Identities = 33/258 (12%), Positives = 69/258 (26%), Gaps = 51/258 (19%)

Query: 642 DCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSN 701
               +  +     L   +P +L N    + L+   N +            +L  L L   
Sbjct: 11  KEVNKTYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC 67

Query: 702 NFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPS 761
                        S   L  + L  N     +++  L                       
Sbjct: 68  QIYWIH--EDTFQSQHRLDTLVLTANPLIF-MAETALSGPK------------------- 105

Query: 762 NQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNAL 821
                             L         + F          + +   ++L +L +  N +
Sbjct: 106 -----------------AL-------KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

Query: 822 TGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSV--LNLSYNNLVGKIPTSTQL 879
           +          ++++ LD   N +       ++SL   +   LNL+ N++ G  P +   
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201

Query: 880 QSFSPTSYEGNKGLYGPP 897
             F   ++ G + L    
Sbjct: 202 AVFQSLNFGGTQNLLVIF 219

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  240 bits (613), Expect = 1e-66
 Identities = 106/686 (15%), Positives = 208/686 (30%), Gaps = 125/686 (18%)

Query: 14  PSTKLSQWSSHQSSDCCDWS---GVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQ 70
            +     W+   + +   W    GV  D  G V GL L+     G + +A  +  L  L+
Sbjct: 295 NTIHSLNWNF--NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA--IGQLTELK 350

Query: 71  SLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIE 130
            L+ G               LT                   +    RL   DL       
Sbjct: 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD---- 406

Query: 131 YSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGP 190
               +        ++  + ++       +L+   T   KA+  L  LQ++  +    +  
Sbjct: 407 ---AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD 463

Query: 191 INHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLE 250
                  +         Y     +     ++L +L  ++L  C    + P+ +  +P L+
Sbjct: 464 NI-----AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 251 TLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTG- 309
           +L+++ N+             S   L    T     L D       +    +   N    
Sbjct: 519 SLNIACNRG-----------ISAAQLKADWT----RLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 310 PIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNL 369
           P   S+  + +L  +D   N     + +   +  L +L L +N +   I   F      +
Sbjct: 564 PASASLQKMVKLGLLDCVHNKV-RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQV 621

Query: 370 QIVVLGHNSLSGSIPRSLFL--LPNLEMLQLSNNQFENQLPEISNVSSSV----LFDLDL 423
           + +   HN L   IP       +  +  +  S N+  ++   IS             + L
Sbjct: 622 EGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680

Query: 424 SGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDN 483
           S N ++   P  +F     + T+ LS+N  + +   S KP+     KN   L+ +D+  N
Sbjct: 681 SYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPK-DGNYKNTYLLTTIDLRFN 738

Query: 484 QISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPN 543
           +++  + +         L  +++S+                                   
Sbjct: 739 KLT-SLSDDFRATTLPYLSNMDVSY----------------------------------- 762

Query: 544 TSYVDYSNNNFTSIPADIGNFMSETEYFYF----VAANNSLAGVIPESVCKATNFQVLDL 599
                   N F+S P    N  S+ + F       A  N +    P  +    +   L +
Sbjct: 763 --------NCFSSFPTQPLN-SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 600 SNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVV 659
            +N++   +   L  +                             L ILD++ N    + 
Sbjct: 814 GSNDIR-KVDEKLTPQ-----------------------------LYILDIADNPNISID 843

Query: 660 PKSLANCNMLQVLDLRSNYISDNFPC 685
             S+       +  L  +   D   C
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQDIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  236 bits (603), Expect = 2e-65
 Identities = 105/616 (17%), Positives = 195/616 (31%), Gaps = 82/616 (13%)

Query: 81  GFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANL 140
           G Q    L N   +T L+L+  G  G +P  I  LT L  L                 + 
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGT-------------HS 358

Query: 141 SLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRS 200
                 L    EL  D  +                    + +    +    +  L  S  
Sbjct: 359 ETVSGRLFGDEELTPDMSEER---------------KHRIRMHYKKMFLDYDQRLNLSDL 403

Query: 201 LSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLL 260
           L               +    L + +  +L+         + I  +  L+ +  + +   
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLT--NRITFISKAIQRLTKLQIIYFANSPF- 460

Query: 261 QGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQ 320
                         D    +         S  NL++LT VE+ +C     +P  + +L +
Sbjct: 461 ----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

Query: 321 LFHMDFSSNHFFGPI----------PSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQ 370
           L  ++ + N                        +    + +NNL    +S   ++++ L 
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576

Query: 371 IVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEG 430
           ++   HN +      +      L  L+L  NQ E  +PE     +  +  L  S N+L+ 
Sbjct: 577 LLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY 633

Query: 431 PVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVP 490
              I     +  + ++D S NK        S         N    S + +S N+I     
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN---ASTVTLSYNEIQKFPT 690

Query: 491 NWIWEVGSGNLKFLNLSHNLVVSLQE------PYSISGI---RFLDLHSNQLRGNIPYMS 541
                     +  + LS+NL+ S+ E        +         +DL  N+L        
Sbjct: 691 ELFA--TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748

Query: 542 ----PNTSYVDYSNNNFTSIPADIGNFMSETEYFYF----VAANNSLAGVIPESVCKATN 593
               P  S +D S N F+S P    N  S+ + F       A  N +    P  +    +
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLN-SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807

Query: 594 FQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGN 653
              L + +N++   +   L  +    L +L++  +N N ++  T         +  L  +
Sbjct: 808 LIQLQIGSNDIR-KVDEKLTPQ----LYILDI-ADNPNISIDVTSVCPYIEAGMYVLLYD 861

Query: 654 QLQGVVPKSLANCNML 669
           + Q      +  C+ L
Sbjct: 862 KTQ-----DIRGCDAL 872

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  222 bits (568), Expect = 7e-61
 Identities = 102/597 (17%), Positives = 193/597 (32%), Gaps = 88/597 (14%)

Query: 159 DLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEF 218
           +L   G +    L     +  LSL+G    G +   + +   L V+    +    SG  F
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366

Query: 219 LAHLTNLKALDLSECGLQGKFPEKILHVPT-LETLDLSINQLLQGSLPNFPKNSSLRDLI 277
                     +  +  ++  + +  L     L   DL  + + +       K  S   L 
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLK 426

Query: 278 LSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPS 337
            +  G                       N    I  ++  LT+L  + F+++ F     +
Sbjct: 427 DTQIGNLT--------------------NRITFISKAIQRLTKLQIIYFANSPFTYDNIA 466

Query: 338 LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQ 397
           +    +  + +  +         ++   L +L  V L +      +P  L+ LP L+ L 
Sbjct: 467 V----DWEDANSDYAKQYENEELSWS-NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521

Query: 398 LSNNQFENQLPEISNVSS--------SVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLS 449
           ++ N+  +     ++ +           +    +  N LE     +   ++  L  LD  
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

Query: 450 SNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN 509
            NK             +       +L+ L +  NQI  E+P       +  ++ L  SHN
Sbjct: 582 HNKVR----------HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHN 629

Query: 510 LVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETE 569
            +  +   ++   +  +                    VD+S N   S   +I   M + +
Sbjct: 630 KLKYIPNIFNAKSVYVM------------------GSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 570 YF---YFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSST------L 620
                    + N +     E     +    + LSNN ++ +IP   +            L
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLL 730

Query: 621 EVLNLGRNNLNGTLSDTIFPGDC-GLQILDLSGNQLQGVVPKSLANCNMLQVLDLR---- 675
             ++L  N L  +LSD         L  +D+S N      P    N + L+   +R    
Sbjct: 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD 788

Query: 676 --SNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFS 730
              N I   +P  +    SL  L + SN+              P L I+D+A N   
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIR---KVDEK--LTPQLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  210 bits (535), Expect = 1e-56
 Identities = 98/685 (14%), Positives = 199/685 (29%), Gaps = 145/685 (21%)

Query: 216 TEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLP--NFPKNSSL 273
            ++ A     +ALD                       + +    + G  P  +   N  +
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINN---TIHSLNWNFNKELDMWGDQPGVDLDNNGRV 325

Query: 274 RDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFG 333
             L L+  G  G +PD+IG L  L  +   + + T                +   +    
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 334 PIPS--LHKSRNLNNLDLSFNNLS-----GGISSTFWEQLLNLQIVVLGHNSLSGSIPRS 386
                 L   + LN  DL  + ++       I       L + QI      +    I ++
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI--GNLTNRITFISKA 443

Query: 387 LFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTL 446
           +  L  L+++  +N+ F      +         D +    +      +S +  L++L  +
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVD------WEDANSDYAKQYENEELS-WSNLKDLTDV 496

Query: 447 DLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEV-------GSG 499
           +L +         +  P  +  L     L  L+I+ N+                      
Sbjct: 497 ELYNCPNM-----TQLPDFLYDLPE---LQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 500 NLKFLNLSHNLVVSLQEPYSISG---IRFLDLHSNQLRGNIPYMSPNTS--YVDYSNNNF 554
            ++   + +N +       S+     +  LD   N++R ++     N     +    N  
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQI 607

Query: 555 TSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLIT 614
             IP D   F                              + L  S+N L   IP     
Sbjct: 608 EEIPEDFCAFTD--------------------------QVEGLGFSHNKLK-YIPNIFNA 640

Query: 615 KSSSTLEVLNLGRNNLNGTLSDTIFPGDCG----LQILDLSGNQLQGVVPKSLANCNMLQ 670
           KS   +  ++   N +     +     D         + LS N++Q    +  A  + + 
Sbjct: 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700

Query: 671 VLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFS 730
            + L +N ++                 +  N+        +N     LL  +DL  NK +
Sbjct: 701 TIILSNNLMTS----------------IPENSLKPKDGNYKN---TYLLTTIDLRFNKLT 741

Query: 731 GRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSI 790
                                       +                 + +   +P + +++
Sbjct: 742 ---------------------------SLSD---------------DFRATTLPYL-SNM 758

Query: 791 DFSSNNFEGPIPVEMGRFRSLYALNMSH------NALTGSIPSSFGNLKEIESLDLSMNN 844
           D S N F    P +      L A  + H      N +    P+       +  L +  N+
Sbjct: 759 DVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

Query: 845 LSGKIPAQLASLNFLSVLNLSYNNL 869
           +  K+  +L     L +L+++ N  
Sbjct: 818 IR-KVDEKL--TPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  200 bits (511), Expect = 1e-53
 Identities = 87/665 (13%), Positives = 184/665 (27%), Gaps = 138/665 (20%)

Query: 257 NQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMA 316
           N        N   +S   +               + N   +T + ++     G +P ++ 
Sbjct: 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG 344

Query: 317 NLTQLFHMDFSSNHFFGPIPSL-HKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLG 375
            LT+L  + F ++           +    +  +   + +       F +    L +  L 
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404

Query: 376 HNSLSG----------------------------SIPRSLFLLPNLEMLQLSNNQFENQL 407
            ++++                              I +++  L  L+++  +N+ F    
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN 464

Query: 408 PEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIP 467
             +         D +    +      +S +  L++L  ++L +         +  P  + 
Sbjct: 465 IAVD------WEDANSDYAKQYENEELS-WSNLKDLTDVELYNCPNM-----TQLPDFLY 512

Query: 468 ILKNQSQLSVLDISDNQISGEVPNWIWEV-------GSGNLKFLNLSHNLVVSLQEPYSI 520
            L     L  L+I+ N+                       ++   + +N +       S+
Sbjct: 513 DLPE---LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569

Query: 521 SG---IRFLDLHSNQLRGNIPYMSPNTS--YVDYSNNNFTSIPADIGNFMSETEYFYFVA 575
                +  LD   N++R ++     N     +    N    IP D   F           
Sbjct: 570 QKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTD--------- 619

Query: 576 ANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLS 635
                              + L  S+N L   IP     KS   +  ++   N +     
Sbjct: 620 -----------------QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661

Query: 636 DTIFPGDCG----LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISD-------NFP 684
           +     D         + LS N++Q    +  A  + +  + L +N ++           
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721

Query: 685 CWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVA 744
              +N   L  + LR N  +  +S      + P L  +D++ N FS              
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-------------- 766

Query: 745 ETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVE 804
                          P+                   LK   I    D   N      P  
Sbjct: 767 -------------SFPTQPL------------NSSQLKAFGIRHQRDAEGNRILRQWPTG 801

Query: 805 MGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNL 864
           +    SL  L +  N +   +        ++  LD++ N         +       +  L
Sbjct: 802 ITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

Query: 865 SYNNL 869
            Y+  
Sbjct: 859 LYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 99.6 bits (248), Expect = 2e-21
 Identities = 35/241 (14%), Positives = 76/241 (31%), Gaps = 22/241 (9%)

Query: 645 LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS 704
           +  L L+G   +G VP ++     L+VL   ++  + +   +     +  +   R +   
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 705 GHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQF 764
            H            L + DL  +  +          M   +  S   +    I   +N+ 
Sbjct: 385 MHYK-KMFLDYDQRLNLSDLLQDAINR------NPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 765 YEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGS 824
                      I   + ++  +   I F+++ F                 N  +     +
Sbjct: 438 ---------TFISKAIQRLTKL-QIIYFANSPFTYDNIAV-----DWEDANSDYAKQYEN 482

Query: 825 IPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSP 884
              S+ NLK++  ++L       ++P  L  L  L  LN++ N  +            + 
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 885 T 885
            
Sbjct: 543 D 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 14/105 (13%), Positives = 37/105 (35%), Gaps = 2/105 (1%)

Query: 788 TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSG 847
           T +  +    +G +P  +G+   L  L+   ++ T S           +  +   + +  
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 848 KI-PAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNK 891
                 L     L++ +L  + +  + P    ++  S  S +  +
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDSRISLKDTQ 429

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  229 bits (585), Expect = 7e-65
 Identities = 103/554 (18%), Positives = 184/554 (33%), Gaps = 65/554 (11%)

Query: 170 ALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALD 229
           + S    LQ L LS C++    +        LS + L  N   S      + LT+L+ L 
Sbjct: 51  SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110

Query: 230 LSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLP-NFPKNSSLRDLILSHTGLSGTLP 288
             E  L       I  + TL+ L+++ N +    LP  F   ++L  + LS+  +     
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170

Query: 289 DSIGNLENLTRVEVS---SCNFTGPIPPSMANLTQLFHMDFSSNH--------FFGPIPS 337
           + +  L    +V +S   S N    I        +L  +    N             +  
Sbjct: 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG 230

Query: 338 LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVL--GHNSLSGSIPRSLFLLPNLEM 395
           LH  R +        NL     S   E L ++ I      + +           L N+  
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIM-EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289

Query: 396 LQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSR 455
           + L+       L ++          L +   +L+         +L  L +L L+ NK S 
Sbjct: 290 MSLAGVSI-KYLEDVPKHFK--WQSLSIIRCQLKQ----FPTLDLPFLKSLTLTMNKGSI 342

Query: 456 LKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQ 515
                              LS LD+S N +S        ++G+ +L+ L+LS N  + + 
Sbjct: 343 ----------SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS 392

Query: 516 EP-YSISGIRFLDLHSNQLRGNIPYMS----PNTSYVDYSNNNFTSIPADIGNFMSETEY 570
                +  ++ LD   + L+    + +        Y+D S  N                 
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF------------ 440

Query: 571 FYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNL 630
                                T+   L ++ N+      + +   +++ L  L+L +  L
Sbjct: 441 --------------DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN-LTFLDLSKCQL 485

Query: 631 NGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNA 690
              +S  +F     LQ+L++S N L  +          L  LD   N I  +        
Sbjct: 486 EQ-ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

Query: 691 SSLQVLVLRSNNFS 704
            SL    L +N+ +
Sbjct: 545 KSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  226 bits (579), Expect = 5e-64
 Identities = 109/598 (18%), Positives = 205/598 (34%), Gaps = 51/598 (8%)

Query: 166 EWCKALSFLPNLQVLSLSGCDLSG-PINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTN 224
                +  +PN+         LS  P +       S   I L +N      +   ++ + 
Sbjct: 3   SLNPCIEVVPNI-TYQCMDQKLSKVPDDI----PSSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 225 LKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS 284
           L+ LDLS C ++    +    +  L  L L+ N +   S  +F   +SL +L+   T L+
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 285 GTLPDSIGNLENLTRVEVSSCNFTG-PIPPSMANLTQLFHMDFSSNHFFGPIPSL----- 338
                 IG L  L ++ V+        +P   +NLT L H+D S N+      +      
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 339 HKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQ 397
              +   +LD+S N +       F  Q + L  + L  N  S +I ++    L  L + +
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAF--QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 398 LSNNQFEN-------QLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSS 450
           L   +F++       +   +  +    + +  L+         +  F  L N+  + L+ 
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAG 294

Query: 451 NKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNL 510
                          +  +    +   L I   Q+       +       LK L L+ N 
Sbjct: 295 VSIKY----------LEDVPKHFKWQSLSIIRCQLKQFPTLDL-----PFLKSLTLTMNK 339

Query: 511 VVSLQEPYSISGIRFLDLHSNQLRGNIPYM-----SPNTSYVDYSNNNFTSIPADIGNFM 565
                +  ++  + +LDL  N L  +         + +  ++D S N    + A+    +
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG-L 398

Query: 566 SETEYFYFVAANNSLAGVIPESV-CKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLN 624
            E ++  F   +++L  V   S          LD+S  N              ++L  L 
Sbjct: 399 EELQHLDF--QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLK 454

Query: 625 LGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFP 684
           +  N+        +F     L  LDLS  QL+ +        + LQ+L++  N +     
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

Query: 685 CWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMM 742
                  SL  L    N         ++      L   +L  N  +     +  L  +
Sbjct: 515 SHYNQLYSLSTLDCSFNRIETSKGILQHFPKS--LAFFNLTNNSVACICEHQKFLQWV 570

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  199 bits (507), Expect = 2e-54
 Identities = 100/623 (16%), Positives = 190/623 (30%), Gaps = 84/623 (13%)

Query: 228 LDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTL 287
               +  L  K P+ I    + + +DLS N L      +F   S L+ L LS   +    
Sbjct: 16  YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 288 PDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP-SLHKSRNLNN 346
             +   L +L+ + ++        P S + LT L ++              + +   L  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 347 LDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQ 406
           L+++ N +       ++  L NL  V L +N +       L  L     + LS +   N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 407 LPEISNVS--SSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPR 464
           +  I + +     L +L L GN     +  +    L  L+   L   +F   +       
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252

Query: 465 AIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIR 524
           +I        +    ++      +           N+  ++L+   +  L++       +
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKF--HCLANVSAMSLAGVSIKYLEDVPKHFKWQ 310

Query: 525 FLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVI 584
            L +   QL+       P    +  + N  +     +                       
Sbjct: 311 SLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVAL--------------------- 349

Query: 585 PESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCG 644
                   +   LDLS N LS +         +++L  L+L  N     +    F G   
Sbjct: 350 -------PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEE 400

Query: 645 LQILDLSGNQLQGVVPKS-LANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNF 703
           LQ LD   + L+ V   S   +   L  LD+       +F       +SL  L +  N+F
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 704 SGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQ 763
             +        +   L  +DL+  +                                   
Sbjct: 461 KDNT-LSNVFANTTNLTFLDLSKCQLEQ-------------------------------- 487

Query: 764 FYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTG 823
                       I   +    +    ++ S NN          +  SL  L+ S N +  
Sbjct: 488 ------------ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

Query: 824 SIPSSFGNLKEIESLDLSMNNLS 846
           S        K +   +L+ N+++
Sbjct: 536 SKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  188 bits (480), Expect = 8e-51
 Identities = 104/625 (16%), Positives = 193/625 (30%), Gaps = 96/625 (15%)

Query: 262 GSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQL 321
           GSL    +             LS  +PD I +  +   +++S          S +N ++L
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSEL 58

Query: 322 FHMDFSSNHFFGPIP-SLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLS 380
             +D S          + H   +L+NL L+ N +      +F   L +L+ +V     L+
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS-GLTSLENLVAVETKLA 117

Query: 381 GSIPRSLFLLPNLEMLQLSNNQFE--NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFF 438
                 +  L  L+ L +++N           SN+++  L  +DLS N ++  + ++   
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN--LVHVDLSYNYIQT-ITVNDLQ 174

Query: 439 ELRNL----YTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIW 494
            LR       +LD+S N    ++  + +           +L  L +  N  S  +     
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQ---------GIKLHELTLRGNFNSSNIMKTCL 225

Query: 495 EVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNF 554
           +     L    L        +            L    +                +  N 
Sbjct: 226 Q-NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF-----------RLTYTND 273

Query: 555 TSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLIT 614
            S      + ++         A  S+  +  E V K   +Q L +    L       L  
Sbjct: 274 FSDDIVKFHCLANVSAMSL--AGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFPTLDL-- 327

Query: 615 KSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM--LQVL 672
                L+ L L  N  + +      P    L  LDLS N L      S ++     L+ L
Sbjct: 328 ---PFLKSLTLTMNKGSISFKKVALPS---LSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGR 732
           DL  N               LQ L  + +     ++     +S   L  +D++       
Sbjct: 382 DLSFNGAII-MSANFMGLEELQHLDFQHSTLKR-VTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 733 LSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDF 792
                                          F                  + ++  ++  
Sbjct: 440 ---------------------------FDGIFL----------------GLTSL-NTLKM 455

Query: 793 SSNNFEGPIPVEM-GRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPA 851
           + N+F+      +     +L  L++S   L       F  L  ++ L++S NNL     +
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

Query: 852 QLASLNFLSVLNLSYNNLVGKIPTS 876
               L  LS L+ S+N +       
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  167 bits (426), Expect = 9e-44
 Identities = 91/461 (19%), Positives = 164/461 (35%), Gaps = 43/461 (9%)

Query: 63  LFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRL---- 118
           +  L  L+ LN+        ++P+   NLTNL +++LS          ++  L       
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 119 VTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQ 178
           ++LD+S            I  +        +L EL L     S++  +    L  L  L 
Sbjct: 184 LSLDMSL---------NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK--TCLQNLAGLH 232

Query: 179 VLSLSGCDLSG------PINHYLAKSRSLSVIRLHYNYG--LSSGTEFLAHLTNLKALDL 230
           V  L   +              +     +++      Y    S        L N+ A+ L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 231 SECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDS 290
           +   +  K+ E +      ++L +   QL Q    + P    L+ L L+     G++   
Sbjct: 293 AGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLP---FLKSLTLTM--NKGSISFK 345

Query: 291 IGNLENLTRVEVSSCNFT--GPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLD 348
              L +L+ +++S    +  G    S      L H+D S N       +      L +LD
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405

Query: 349 LSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLP 408
              + L      + +  L  L  + + + +           L +L  L+++ N F++   
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465

Query: 409 EISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPI 468
                +++ L  LDLS  +LE  +   +F  L  L  L++S N    L  +         
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLLFLDSSH-------- 516

Query: 469 LKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN 509
                 LS LD S N+I              +L F NL++N
Sbjct: 517 YNQLYSLSTLDCSFNRIETSKGILQH--FPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  163 bits (415), Expect = 2e-42
 Identities = 85/525 (16%), Positives = 147/525 (28%), Gaps = 91/525 (17%)

Query: 372 VVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPE-ISNVSSSVLFDLDLSGNRLEG 430
                  LS  +P  +    + + + LS N  +       SN S   L  LDLS   +E 
Sbjct: 16  YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE--LQWLDLSRCEIET 70

Query: 431 PVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVP 490
            +    +  L +L  L L+ N        S            + L  L   + +++    
Sbjct: 71  -IEDKAWHGLHHLSNLILTGNPIQSFSPGS--------FSGLTSLENLVAVETKLASLES 121

Query: 491 NWIWEVGSGNLKFLNLSHNLVVSLQEPYSISG---IRFLDLHSNQLRG-------NIPYM 540
             I       LK LN++HN + S + P   S    +  +DL  N ++         +   
Sbjct: 122 FPI--GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179

Query: 541 SPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLS 600
                 +D S N    I       +                               L L 
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAFQGI---------------------------KLHELTLR 212

Query: 601 NNNLSGTIPACLITKSSSTLEVLNLGRNNLNG-----TLSDTIFPGDCGLQI--LDLSGN 653
            N  S  I    +   +  L V  L                +I  G C + I    L+  
Sbjct: 213 GNFNSSNIMKTCLQNLAG-LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 654 QLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNK 713
                          +  + L    I       +      Q L +               
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQF-----PT 324

Query: 714 VSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTV 773
           +  P L+ + L  NK S    +  L             +++L +    N           
Sbjct: 325 LDLPFLKSLTLTMNKGSISFKKVAL-----------PSLSYLDLS--RNALSFSGCCSY- 370

Query: 774 KGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIP-SSFGNL 832
                  L   ++   +D S N     +         L  L+  H+ L      S+F +L
Sbjct: 371 -----SDLGTNSL-RHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423

Query: 833 KEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTST 877
           +++  LD+S  N           L  L+ L ++ N+      ++ 
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  113 bits (286), Expect = 3e-26
 Identities = 81/478 (16%), Positives = 129/478 (26%), Gaps = 110/478 (23%)

Query: 421 LDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDI 480
                 +L   VP  I     +   +DLS N    LK  S          N S+L  LD+
Sbjct: 16  YQCMDQKLSK-VPDDIP---SSTKNIDLSFNPLKILKSYS--------FSNFSELQWLDL 63

Query: 481 SDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISG---IRFLDLHSNQLRGNI 537
           S  +I           G  +L  L L+ N + S   P S SG   +  L     +L    
Sbjct: 64  SRCEIETIEDKAWH--GLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLE 120

Query: 538 PYM---SPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNF 594
            +          ++ ++N   S                           +P      TN 
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCK-------------------------LPAYFSNLTNL 155

Query: 595 QVLDLSNNNLSGTIPACL--ITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG 652
             +DLS N +       L  + ++      L++  N ++  + D  F     L  L L G
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAF-QGIKLHELTLRG 213

Query: 653 NQLQGVVPK-SLANCNMLQVLDLRSNYISDNF------PCWLRNASSLQVLVLRSNNFSG 705
           N     + K  L N   L V  L      D        P  +     + +   R    + 
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273

Query: 706 HISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFY 765
                        +  + LA                                 +     +
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIK---------------------------YLEDVPKH 306

Query: 766 EVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSI 825
                                + S+       +            L +L ++ N    SI
Sbjct: 307 -------------------FKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKG--SI 342

Query: 826 PSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLS--VLNLSYNNLVGKIPTSTQLQS 881
                 L  +  LDLS N LS       + L   S   L+LS+N  +        L+ 
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE 400

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 95.1 bits (237), Expect = 3e-20
 Identities = 60/319 (18%), Positives = 101/319 (31%), Gaps = 64/319 (20%)

Query: 582 GVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPG 641
           G +   +    N       +  LS  +P  +     S+ + ++L  N L   L    F  
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDI----PSSTKNIDLSFNPLK-ILKSYSFSN 54

Query: 642 DCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSN 701
              LQ LDLS  +++ +  K+    + L  L L  N I    P      +SL+ LV    
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 702 NFSGHISCPRNKVSW-PLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMP 760
             +   S     +     L+ +++A N                   K  +  ++L     
Sbjct: 115 KLA---SLESFPIGQLITLKKLNVAHNFIHS--------------CKLPAYFSNL----- 152

Query: 761 SNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFR----SLYALNM 816
                                   N+   +D S N  +     ++   R       +L+M
Sbjct: 153 -----------------------TNL-VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 817 SHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPA-QLASLNFLSVLNLSYNNLVGKIPT 875
           S N +      +F  +K +  L L  N  S  I    L +L  L V  L           
Sbjct: 189 SLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD---- 243

Query: 876 STQLQSFSPTSYEGNKGLY 894
              L+ F P+  EG   + 
Sbjct: 244 ERNLEIFEPSIMEGLCDVT 262

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.4 bits (178), Expect = 4e-13
 Identities = 40/215 (18%), Positives = 67/215 (31%), Gaps = 13/215 (6%)

Query: 46  LDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFA 105
           LDLS   +      +        L+ L+L F       + +    L  L +L+       
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLK 412

Query: 106 GEIPTE-ISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASG 164
                    SL +L+ LD+S       +  +           LT L  L +     S   
Sbjct: 413 RVTEFSAFLSLEKLLYLDISY-----TNTKIDFDG---IFLGLTSLNTLKMAGN--SFKD 462

Query: 165 TEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTN 224
                  +   NL  L LS C L             L ++ + +N  L   +     L +
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 225 LKALDLSECGLQGKFPEKILHVPTLETLDLSINQL 259
           L  LD S   ++           +L   +L+ N +
Sbjct: 523 LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  206 bits (527), Expect = 6e-60
 Identities = 83/327 (25%), Positives = 128/327 (39%), Gaps = 57/327 (17%)

Query: 577 NNSLAGVIPESVCKATNFQVLDLSNNNLSGT--IPACLITKSSSTLEVLNL-GRNNLNGT 633
           N +  GV+ ++  +      LDLS  NL     IP+ L   +   L  L + G NNL G 
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL--ANLPYLNFLYIGGINNLVGP 92

Query: 634 LSDTIFPGDC-GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASS 692
           +   I       L  L ++   + G +P  L+    L  LD   N +S   P  + +  +
Sbjct: 93  IPPAI--AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 693 LQVLVLRSNNFSGHISCPRNKVSWP-LLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSE 751
           L  +    N  SG I  P +  S+  L   + ++ N+ +G++                  
Sbjct: 151 LVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKI------------------ 190

Query: 752 VNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSL 811
                   P                    L        +D S N  EG   V  G  ++ 
Sbjct: 191 --------PP---------------TFANLN----LAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 812 YALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 871
             ++++ N+L   +    G  K +  LDL  N + G +P  L  L FL  LN+S+NNL G
Sbjct: 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 872 KIPTSTQLQSFSPTSYEGNKGLYGPPL 898
           +IP    LQ F  ++Y  NK L G PL
Sbjct: 283 EIPQGGNLQRFDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  188 bits (480), Expect = 2e-53
 Identities = 72/270 (26%), Positives = 117/270 (43%), Gaps = 19/270 (7%)

Query: 219 LAHLTNLKALDLSECGLQG--KFPEKILHVPTLETLDLSINQLLQGSLPN-FPKNSSLRD 275
                 +  LDLS   L      P  + ++P L  L +     L G +P    K + L  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 276 LILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPI 335
           L ++HT +SG +PD +  ++ L  ++ S    +G +PPS+++L  L  + F  N   G I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 336 PS--LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNL 393
           P      S+   ++ +S N L+G I  TF    LNL  V L  N L G          N 
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 394 EMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKF 453
           + + L+ N     L ++    +  L  LDL  NR+ G +P  +  +L+ L++L++S N  
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKN--LNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNL 280

Query: 454 SRLKLASSKPRAIPILKNQSQLSVLDISDN 483
                       IP   N  +  V   ++N
Sbjct: 281 C---------GEIPQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  173 bits (442), Expect = 2e-48
 Identities = 85/351 (24%), Positives = 134/351 (38%), Gaps = 94/351 (26%)

Query: 269 KNSSLRDLILSHTGLSGT--LPDSIGNLENLTRVEVSSCN-FTGPIPPSMANLTQLFHMD 325
           +   + +L LS   L     +P S+ NL  L  + +   N   GPIPP++A LTQL ++ 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 326 FSSNHFFGPIP-SLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIP 384
            +  +  G IP  L + + L  LD S+N LSG +  +    L NL  +    N +SG+IP
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIP 166

Query: 385 RSLFLLPNL-EMLQLSNNQFENQLP-EISNVSSSVLFDLDLSGNRLEGPVPISIFFELRN 442
            S      L   + +S N+   ++P   +N++   L  +DLS N LEG   +      +N
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---LAFVDLSRNMLEGDASVLFG-SDKN 222

Query: 443 LYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLK 502
              + L+ N  +           +  +     L+ LD+ +N+I G +P  +       LK
Sbjct: 223 TQKIHLAKNSLAF---------DLGKVGLSKNLNGLDLRNNRIYGTLPQGL-----TQLK 268

Query: 503 FLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIG 562
           FL+                    L++  N L G IP                       G
Sbjct: 269 FLH-------------------SLNVSFNNLCGEIP---------------------QGG 288

Query: 563 NFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNN-LSGT-IPAC 611
           N                              F V   +NN  L G+ +PAC
Sbjct: 289 NL---------------------------QRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  159 bits (405), Expect = 2e-43
 Identities = 80/353 (22%), Positives = 121/353 (34%), Gaps = 77/353 (21%)

Query: 16  TKLSQWSSHQSSDCCDWSGVRCDEAGH---VIGLDLSWEPIIGGLENATGLFDLQYLQSL 72
           T LS W          W GV CD       V  LDLS   +       + L +L YL  L
Sbjct: 22  TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81

Query: 73  NL-GFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLS-----GI 126
            + G     G  IP  +  LT L YL ++    +G IP  +S +  LVTLD S     G 
Sbjct: 82  YIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140

Query: 127 VPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCD 186
           +P                                          +S LPNL  ++  G  
Sbjct: 141 LPPS----------------------------------------ISSLPNLVGITFDGNR 160

Query: 187 LSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHV 246
           +SG I         L                          + +S   L GK P    ++
Sbjct: 161 ISGAIPDSYGSFSKLFTS-----------------------MTISRNRLTGKIPPTFANL 197

Query: 247 PTLETLDLSINQLLQGSLPN-FPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSC 305
             L  +DLS N  L+G     F  + + + + L+   L+  L   +G  +NL  +++ + 
Sbjct: 198 -NLAFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNN 254

Query: 306 NFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGI 358
              G +P  +  L  L  ++ S N+  G IP     +  +    + N    G 
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (389), Expect = 2e-41
 Identities = 81/380 (21%), Positives = 119/380 (31%), Gaps = 111/380 (29%)

Query: 325 DFSSNHFFGPIP-SLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSI 383
           D  +  + G +  +  ++  +NNLDLS  NL                            I
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK-----------------------PYPI 68

Query: 384 PRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNL 443
           P SL  LP L  L +                           N L GP+P +I  +L  L
Sbjct: 69  PSSLANLPYLNFLYIGGI------------------------NNLVGPIPPAIA-KLTQL 103

Query: 444 YTLDLSSNKFSRLKLASSKPRAIPI-LKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLK 502
           + L ++    S          AIP  L     L  LD S N +SG +P  I      +L 
Sbjct: 104 HYLYITHTNVSG---------AIPDFLSQIKTLVTLDFSYNALSGTLPPSI-----SSLP 149

Query: 503 FLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIG 562
            L                     +    N++ G                    +IP   G
Sbjct: 150 NL-------------------VGITFDGNRISG--------------------AIPDSYG 170

Query: 563 NFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEV 622
           +F           + N L G IP +     N   +DLS N L G         S    + 
Sbjct: 171 SFSKLFTSMTI--SRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF--GSDKNTQK 225

Query: 623 LNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDN 682
           ++L +N+L   L          L  LDL  N++ G +P+ L     L  L++  N +   
Sbjct: 226 IHLAKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 683 FPCWLRNASSLQVLVLRSNN 702
            P    N     V    +N 
Sbjct: 284 IPQ-GGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  143 bits (364), Expect = 5e-38
 Identities = 61/278 (21%), Positives = 107/278 (38%), Gaps = 24/278 (8%)

Query: 469 LKNQSQLS----VLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN-LVVSLQEPYSI--- 520
           L N + LS      D  +    G + +      +  +  L+LS   L      P S+   
Sbjct: 18  LGNPTTLSSWLPTTDCCNRTWLGVLCDTD--TQTYRVNNLDLSGLNLPKPYPIPSSLANL 75

Query: 521 SGIRFLDLHS-NQLRGNIP---YMSPNTSYVDYSNNNFT-SIPADIGNFMSETEYFYFVA 575
             + FL +   N L G IP          Y+  ++ N + +IP  +   +       F  
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDF-- 132

Query: 576 ANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLS 635
           + N+L+G +P S+    N   +    N +SG IP       S     + + RN L G + 
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP 191

Query: 636 DTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQV 695
            T    +  L  +DLS N L+G       +    Q + L  N ++ +    +  + +L  
Sbjct: 192 PTF--ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248

Query: 696 LVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRL 733
           L LR+N   G +  P+       L  ++++ N   G +
Sbjct: 249 LDLRNNRIYGTL--PQGLTQLKFLHSLNVSFNNLCGEI 284

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 83.0 bits (206), Expect = 2e-17
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 788 TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGS--IPSSFGNLKEIESLDLS-MNN 844
            + D  +  + G +     +   +  L++S   L     IPSS  NL  +  L +  +NN
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 845 LSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS 876
           L G IP  +A L  L  L +++ N+ G IP  
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  202 bits (516), Expect = 7e-56
 Identities = 120/534 (22%), Positives = 203/534 (38%), Gaps = 44/534 (8%)

Query: 198 SRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSIN 257
             S   + L +N     G+        L+ LDLS C +Q         +  L TL L+ N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 258 QLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFT-GPIPPSMA 316
            +   +L  F   SSL+ L+   T L+      IG+L+ L  + V+        +P   +
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 317 NLTQLFHMDFSSNHFFGPIPSL-----HKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQI 371
           NLT L H+D SSN       +             +LDLS N ++      F  + + L  
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHK 204

Query: 372 VVLGHNSLSGSIPRSLFL-LPNLEMLQLSNNQFE--NQLPEIS-----NVSSSVLFDLDL 423
           + L +N  S ++ ++    L  LE+ +L   +F     L +        + +  + +  L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 424 SGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDN 483
           +         I +F  L N+ +  L S    R          +           L++ + 
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER----------VKDFSYNFGWQHLELVNC 314

Query: 484 QISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRG-NIPYMS- 541
           +           +   +LK L  + N   +      +  + FLDL  N L        S 
Sbjct: 315 KF-----GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 542 ---PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESV-CKATNFQVL 597
               +  Y+D S N   ++ ++        E+  F   +++L  +   SV     N   L
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQ-LEHLDF--QHSNLKQMSEFSVFLSLRNLIYL 426

Query: 598 DLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQG 657
           D+S+ +        +    SS LEVL +  N+        IF     L  LDLS  QL+ 
Sbjct: 427 DISHTHTR-VAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 658 VVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPR 711
           + P +  + + LQVL++ SN +           +SLQ + L +N +    SCPR
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC--SCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  169 bits (430), Expect = 2e-44
 Identities = 116/616 (18%), Positives = 206/616 (33%), Gaps = 124/616 (20%)

Query: 69  LQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVP 128
            ++L+L F   +         +   L  L+LS+            SL+ L TL L+G   
Sbjct: 30  TKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG--- 85

Query: 129 IEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLS 188
                                +  L L              A S L +LQ L     +L+
Sbjct: 86  -------------------NPIQSLALG-------------AFSGLSSLQKLVAVETNLA 113

Query: 189 GPINHYLAKSRSLSVIRLHYNYGLSSGT--EFLAHLTNLKALDLSECGLQGKFPEKILHV 246
              N  +   ++L  + + +N  + S    E+ ++LTNL+ LDLS   +Q  +   +  +
Sbjct: 114 SLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 247 PTLE----TLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPD-SIGNLENLTRVE 301
             +     +LDLS+N +       F K   L  L L +   S  +    I  L  L    
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 302 VSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISST 361
           +    F      +  NL +              + +L     +    L++ +        
Sbjct: 232 LVLGEF-----RNEGNLEKF------DKSALEGLCNL----TIEEFRLAYLDYYLDDIID 276

Query: 362 FWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDL 421
            +  L N+    L   ++   +    +     + L+L N +F  Q P +   S   L  L
Sbjct: 277 LFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKF-GQFPTLKLKS---LKRL 330

Query: 422 DLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDIS 481
             + N+           +L +L  LDLS N  S     S            + L  LD+S
Sbjct: 331 TFTSNKGGN---AFSEVDLPSLEFLDLSRNGLSFKGCCSQ------SDFGTTSLKYLDLS 381

Query: 482 DNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMS 541
            N +   + +    +G   L+ L+  H+ +  + E      +R L               
Sbjct: 382 FNGVI-TMSSNF--LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL--------------- 423

Query: 542 PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSN 601
               Y+D S+ +                                      ++ +VL ++ 
Sbjct: 424 ---IYLDISHTHTRVAF--------------------------NGIFNGLSSLEVLKMAG 454

Query: 602 NNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPK 661
           N+        + T+  + L  L+L +  L   LS T F     LQ+L+++ NQL+ V   
Sbjct: 455 NSFQENFLPDIFTELRN-LTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDG 512

Query: 662 SLANCNMLQVLDLRSN 677
                  LQ + L +N
Sbjct: 513 IFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  149 bits (378), Expect = 6e-38
 Identities = 102/584 (17%), Positives = 187/584 (32%), Gaps = 66/584 (11%)

Query: 293 NLENLTRVEVSSCNFTGPIPPS-MANLTQLFHMDFSSNHFFG-PIPSLHKSRNLNNLDLS 350
            + N+T  +    NF   IP +   +   L   D S N        S      L  LDLS
Sbjct: 6   VVPNIT-YQCMELNFYK-IPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLS 60

Query: 351 FNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEI 410
              +       + + L +L  ++L  N +      +   L +L+ L        + L   
Sbjct: 61  RCEIQTIEDGAY-QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENF 118

Query: 411 SNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILK 470
                  L +L+++ N ++       F  L NL  LDLSSNK   +         + +L 
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-----CTDLRVLH 173

Query: 471 N-QSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLH 529
                   LD+S N ++   P    E+    L  L L +N          I G+  L++H
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEI---RLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

Query: 530 SNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYF-VAANNSLAGVIPESV 588
              L                +  N           +       F +A  +     I +  
Sbjct: 231 RLVLGEF------------RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 589 CKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQIL 648
              TN     L +  +   +           LE++N                    L+ L
Sbjct: 279 NCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQF-------PTLKLKSLKRL 330

Query: 649 DLSGNQLQGVVPKSLANCNMLQVLDLRSNYIS--DNFPCWLRNASSLQVLVLRSNNFSGH 706
             + N+       S  +   L+ LDL  N +S            +SL+ L L  N     
Sbjct: 331 TFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-- 386

Query: 707 ISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYE 766
            +   N +    L+ +D   +    ++S+  +   +         + +L I         
Sbjct: 387 -TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSL-------RNLIYLDIS--HTHTRV 435

Query: 767 VRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEM-GRFRSLYALNMSHNALTGSI 825
               +           + ++   +  + N+F+     ++    R+L  L++S   L    
Sbjct: 436 AFNGI--------FNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 826 PSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
           P++F +L  ++ L+++ N L          L  L  + L  N  
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  149 bits (377), Expect = 9e-38
 Identities = 99/490 (20%), Positives = 174/490 (35%), Gaps = 44/490 (8%)

Query: 65  DLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLS 124
            L +L +L L     +          L++L  L   +   A      I  L  L  L+++
Sbjct: 74  SLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 125 G--IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQV-LS 181
              I             L  +  NLT L  L L    + +      + L  +P L + L 
Sbjct: 133 HNLIQSF---------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 182 LSGCDLSGPINHYLAKSRSLSVIRLHYNY-GLSSGTEFLAHLTNLKALDLSECGLQG--- 237
           LS   ++  I     K   L  + L  N+  L+     +  L  L+   L     +    
Sbjct: 184 LSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 238 --KFPEKI---LHVPTLETLDLSINQLLQGSLPN-FPKNSSLRDLILSHTGLSGTLPDSI 291
             KF +     L   T+E   L+        + + F   +++    L    +      S 
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS- 301

Query: 292 GNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSF 351
                   +E+ +C F       + +L +L    F+SN   G   S     +L  LDLS 
Sbjct: 302 -YNFGWQHLELVNCKFGQFPTLKLKSLKRL---TFTSNK-GGNAFSEVDLPSLEFLDLSR 356

Query: 352 NNLSG-GISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEI 410
           N LS  G  S       +L+ + L  N +  ++  +   L  LE L   ++  +      
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 411 SNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILK 470
             +S   L  LD+S           IF  L +L  L ++ N F    L         I  
Sbjct: 416 VFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPD-------IFT 467

Query: 471 NQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPY--SISGIRFLDL 528
               L+ LD+S  Q+  ++    +     +L+ LN++ N + S+ +     ++ ++ + L
Sbjct: 468 ELRNLTFLDLSQCQLE-QLSPTAFN-SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525

Query: 529 HSNQLRGNIP 538
           H+N    + P
Sbjct: 526 HTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  137 bits (347), Expect = 5e-34
 Identities = 93/584 (15%), Positives = 180/584 (30%), Gaps = 88/584 (15%)

Query: 271 SSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNH 330
            S ++L LS   L      S  +   L  +++S C        +  +L+ L  +  + N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 331 FFG-PIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSL-SGSIPRSLF 388
                + +     +L  L     NL+  + +     L  L+ + + HN + S  +P    
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 389 LLPNLEMLQLSNNQFENQLPEISNV---SSSVLFDLDLSGNRLEGPVPISIFFELRNLYT 445
            L NLE L LS+N+ ++       V      +   LDLS N +   +    F E+  L+ 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RLHK 204

Query: 446 LDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLN 505
           L L +N  S L +  +  + +  L+    +     ++  +     + +  + +  ++   
Sbjct: 205 LTLRNNFDS-LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 506 LSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFM 565
           L++            + +  +                  S     +     +     NF 
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNV------------------SSFSLVSVTIERVKDFSYNFG 305

Query: 566 SETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNL 625
            +         N               + + L  ++N          +      LE L+L
Sbjct: 306 WQHLELV----NCKFGQFPTLK---LKSLKRLTFTSNKGGNAFSEVDLPS----LEFLDL 354

Query: 626 GRNNLNG-TLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFP 684
            RN L+          G   L+ LDLS N +   +  +      L+ LD + + +     
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 685 -CWLRNASSLQVLVLRSNNFSGHISCPRNKVSW-PLLQIVDLACNKFSGRLSQKWLLTMM 742
                +  +L  L +   +            +    L+++ +A N F             
Sbjct: 414 FSVFLSLRNLIYLDISHTHTR---VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF---- 466

Query: 743 VAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIP 802
                  +E+ +L                                T +D S    E   P
Sbjct: 467 -------TELRNL--------------------------------TFLDLSQCQLEQLSP 487

Query: 803 VEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS 846
                  SL  LNM+ N L       F  L  ++ + L  N   
Sbjct: 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  135 bits (341), Expect = 3e-33
 Identities = 94/521 (18%), Positives = 163/521 (31%), Gaps = 88/521 (16%)

Query: 372 VVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGP 431
                 +    IP +L    + + L LS N   + L   S  S   L  LDLS   ++  
Sbjct: 12  YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQT- 66

Query: 432 VPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPN 491
           +    +  L +L TL L+ N    L        A+      S L  L   +  ++     
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSL--------ALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 492 WIWEVGSGNLKFLNLSHNLVVSLQEPYSISG---IRFLDLHSNQLRG-------NIPYMS 541
            I       LK LN++HNL+ S + P   S    +  LDL SN+++         +  M 
Sbjct: 119 PIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 542 PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKA-TNFQVLDL- 599
                +D S N    I       +   +       NN  +  + ++  +     +V  L 
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHK---LTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 600 -----SNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ 654
                +  NL     + L    + T+E   L   +        +F     +    L    
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 655 LQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKV 714
           ++ V     +     Q L+L +          L++   L+ L   SN          ++V
Sbjct: 294 IERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSN----KGGNAFSEV 344

Query: 715 SWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVK 774
             P L+ +DL+ N  S                              S   +         
Sbjct: 345 DLPSLEFLDLSRNGLSF-------------------------KGCCSQSDF--------- 370

Query: 775 GIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSS-FGNLK 833
                     ++   +D S N     +         L  L+  H+ L      S F +L+
Sbjct: 371 -------GTTSL-KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 834 EIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 874
            +  LD+S  +           L+ L VL ++ N+      
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  193 bits (491), Expect = 4e-51
 Identities = 128/677 (18%), Positives = 226/677 (33%), Gaps = 139/677 (20%)

Query: 83  QIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSL 142
           Q+P     L     L LS         +    L +L  L+L           + I   + 
Sbjct: 18  QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGS-----QYTPLTIDKEA- 68

Query: 143 FLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPI--NHYLAKSRS 200
             +NL  L  L L    +     +       L +L  L L  C LS  +  + Y    ++
Sbjct: 69  -FRNLPNLRILDLGSSKIYFLHPDA---FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 201 LSVIRLHYNY--GLSSGTEFLAHLTNLKALDLSECGLQGKFPE--KILHVPTLETLDLSI 256
           L+ + L  N    L     F   L +LK++D S   +        + L   TL    L+ 
Sbjct: 125 LTRLDLSKNQIRSLYLHPSF-GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 257 NQLLQ------GSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGP 310
           N L        G   N  +N  L  L +S  G +  +  +  N  + +            
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS------------ 231

Query: 311 IPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWE-QLLNL 369
                                     SL  + ++      F+N+     +TF      ++
Sbjct: 232 -----------------------QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV 268

Query: 370 QIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLE 429
           + + L H  +     R    L +L++L L+ N+                           
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK------------------------ 304

Query: 430 GPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEV 489
             +    F+ L NL  L+LS N    L  ++             +++ +D+  N I+  +
Sbjct: 305 --IADEAFYGLDNLQVLNLSYNLLGELYSSN--------FYGLPKVAYIDLQKNHIA-II 353

Query: 490 PNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDY 549
            +  ++     L+ L+L  N    L   + I  I  + L  N+L   +P ++   + +  
Sbjct: 354 QDQTFK-FLEKLQTLDLRDNA---LTTIHFIPSIPDIFLSGNKLV-TLPKINLTANLIHL 408

Query: 550 SNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIP 609
           S N   ++              YF+     L              Q+L L+ N  S    
Sbjct: 409 SENRLENLD-----------ILYFLLRVPHL--------------QILILNQNRFSSCSG 443

Query: 610 ACLITKSSSTLEVLNLGRNNLNG----TLSDTIFPGDCGLQILDLSGNQLQGVVPKSLAN 665
               +++ S LE L LG N L       L   +F G   LQ+L L+ N L  + P   ++
Sbjct: 444 DQTPSENPS-LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502

Query: 666 CNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLA 725
              L+ L L SN ++      L   ++L++L +  N          N   +  L ++D+ 
Sbjct: 503 LTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAP-----NPDVFVSLSVLDIT 555

Query: 726 CNKFSGRLSQKWLLTMM 742
            NKF         +  +
Sbjct: 556 HNKFICECELSTFINWL 572

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  188 bits (480), Expect = 1e-49
 Identities = 117/606 (19%), Positives = 215/606 (35%), Gaps = 95/606 (15%)

Query: 139 NLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHY-LAK 197
           NL+   Q L     L L    +         +  FL  LQ+L L        I+      
Sbjct: 15  NLTQVPQVLNTTERLLLSFNYIRTVTAS---SFPFLEQLQLLELGSQYTPLTIDKEAFRN 71

Query: 198 SRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKF--PEKILHVPTLETLDLS 255
             +L ++ L  +       +    L +L  L L  CGL           ++  L  LDLS
Sbjct: 72  LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 256 INQLLQGSL-PNFPKNSSLRDLILSHTGLSGTLPDSIGNLE--NLTRVEVSSCNFTGPIP 312
            NQ+    L P+F K +SL+ +  S   +       +  L+   L+   +++ +    + 
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

Query: 313 PSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIV 372
                    F                 ++  L  LD+S N  +  I+  F          
Sbjct: 192 VDWGKCMNPF-----------------RNMVLEILDVSGNGWTVDITGNFS--------- 225

Query: 373 VLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEI-SNVSSSVLFDLDLSGNRLEGP 431
               N++S S   SL L  ++       +  ++      + ++ S +  LDLS   +   
Sbjct: 226 ----NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS- 280

Query: 432 VPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPN 491
           +   +F  L++L  L+L+ NK +++        A         L VL++S N +  E+ +
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKI--------ADEAFYGLDNLQVLNLSYNLLG-ELYS 331

Query: 492 WIWEVGSGNLKFLNLSHNLVVSLQE--PYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDY 549
             +  G   + +++L  N +  +Q+     +  ++ LDL  N L     +  P+   +  
Sbjct: 332 SNFY-GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL--TTIHFIPSIPDIFL 388

Query: 550 SNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIP 609
           S N   ++P                                     ++ LS N L   + 
Sbjct: 389 SGNKLVTLPKI------------------------------NLTANLIHLSENRLEN-LD 417

Query: 610 ACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSL-----A 664
                     L++L L +N  +    D     +  L+ L L  N LQ      L      
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477

Query: 665 NCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDL 724
             + LQVL L  NY++   P    + ++L+ L L SN     ++   +      L+I+D+
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR----LTVLSHNDLPANLEILDI 533

Query: 725 ACNKFS 730
           + N+  
Sbjct: 534 SRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  182 bits (463), Expect = 1e-47
 Identities = 115/580 (19%), Positives = 205/580 (35%), Gaps = 88/580 (15%)

Query: 303 SSCNFTGPIPPSMANLTQLFHMDFSSNHFFG-PIPSLHKSRNLNNLDLSFNNLSGGISST 361
             CN T  +P  +    +L     S N+       S      L  L+L        I   
Sbjct: 12  RFCNLTQ-VPQVLNTTERL---LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67

Query: 362 FWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQLSNNQFEN-QLPEISNVSSSVLF 419
            +  L NL+I+ LG + +   +    F  L +L  L+L      +  L +    +   L 
Sbjct: 68  AFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126

Query: 420 DLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLD 479
            LDLS N++        F +L +L ++D SSN+   +         +  L+ ++ LS   
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC-----EHELEPLQGKT-LSFFS 180

Query: 480 ISDNQISGEVPNWIWEVGSG----NLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRG 535
           ++ N +   V     +  +      L+ L++S N           + I      S  L  
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL-- 238

Query: 536 NIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQ 595
                + +     +  +N                        N+ AG+        ++ +
Sbjct: 239 -----AHHIMGAGFGFHNIKDPD------------------QNTFAGLAR------SSVR 269

Query: 596 VLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQL 655
            LDLS+  +  ++ + +       L+VLNL  N +N  ++D  F G   LQ+L+LS N L
Sbjct: 270 HLDLSHGFVF-SLNSRVFETLKD-LKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLL 326

Query: 656 QGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVS 715
             +   +      +  +DL+ N+I+       +    LQ L LR N     ++       
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA----LTTIHF--- 379

Query: 716 WPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKG 775
            P +  + L+ NK            +               I +  N+   +        
Sbjct: 380 IPSIPDIFLSGNKLVTLPKINLTANL---------------IHLSENRLENLD------- 417

Query: 776 IEIKLLKVPNIFTSIDFSSNNFEG-PIPVEMGRFRSLYALNMSHNALTGSIPSS-----F 829
           I   LL+VP++   +  + N F             SL  L +  N L  +  +      F
Sbjct: 418 ILYFLLRVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 830 GNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
             L  ++ L L+ N L+   P   + L  L  L+L+ N L
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  166 bits (422), Expect = 2e-42
 Identities = 99/536 (18%), Positives = 181/536 (33%), Gaps = 56/536 (10%)

Query: 46  LDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFA 105
           L+L  +     ++      +L  L+ L+LG +       P     L +L  L L   G +
Sbjct: 53  LELGSQYTPLTIDKEA-FRNLPNLRILDLGSSKIYFLH-PDAFQGLFHLFELRLYFCGLS 110

Query: 106 GEI--PTEISSLTRLVTLDLSG--IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLS 161
             +       +L  L  LDLS   I  +          L      L  L  +      + 
Sbjct: 111 DAVLKDGYFRNLKALTRLDLSKNQIRSL---------YLHPSFGKLNSLKSIDFSSNQIF 161

Query: 162 ASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLA------KSRSLSVIRLHYNY----- 210
                  + L     L   SL+   L   ++          ++  L ++ +  N      
Sbjct: 162 LVCEHELEPLQ-GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI 220

Query: 211 ------GLSSGTEF-LAHLTNLKALDLSECGLQGKFPE--KILHVPTLETLDLSINQLLQ 261
                  +S    F L    ++         ++         L   ++  LDLS   +  
Sbjct: 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF- 279

Query: 262 GSLPN--FPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLT 319
            SL +  F     L+ L L++  ++    ++   L+NL  + +S          +   L 
Sbjct: 280 -SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338

Query: 320 QLFHMDFSSNHFFG-PIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNS 378
           ++ ++D   NH       +      L  LDL  N L      T    + ++  + L  N 
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL------TTIHFIPSIPDIFLSGNK 392

Query: 379 LSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFF 438
           L  ++P+         ++ LS N+ EN       +    L  L L+ NR           
Sbjct: 393 LV-TLPKINL---TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

Query: 439 ELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGS 498
           E  +L  L L  N                 L +   L VL ++ N ++  +P  ++    
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSH---LQVLYLNHNYLN-SLPPGVFS-HL 503

Query: 499 GNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNF 554
             L+ L+L+ N +  L      + +  LD+  NQL    P +  + S +D ++N F
Sbjct: 504 TALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  162 bits (411), Expect = 4e-41
 Identities = 117/645 (18%), Positives = 209/645 (32%), Gaps = 77/645 (11%)

Query: 263 SLPNFPKN-SSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSM-ANLTQ 320
           +L   P+  ++   L+LS   +      S   LE L  +E+ S      I      NL  
Sbjct: 15  NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74

Query: 321 LFHMDFSSNHFFG-PIPSLHKSRNLNNLDLSFNNLS-GGISSTFWEQLLNLQIVVLGHNS 378
           L  +D  S+  +     +     +L  L L F  LS   +   ++  L  L  + L  N 
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 379 LSGSIPRSLFL-LPNLEMLQLSNNQFENQLPE-ISNVSSSVLFDLDLSGNRLEGPVPISI 436
           +        F  L +L+ +  S+NQ        +  +    L    L+ N L   V +  
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194

Query: 437 F-----FELRNLYTLDLSSNKFSRLKLASS----KPRAIPILKNQSQLSVLDISDNQISG 487
                 F    L  LD+S N ++     +            L     +       + I  
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254

Query: 488 EVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYV 547
              N    +   +++ L+LSH  V SL        ++ L                    +
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLN-SRVFETLKDL------------------KVL 295

Query: 548 DYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGT 607
           + + N    I  +    +   +      + N L  +   +         +DL  N+++  
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNL--SYNLLGELYSSNFYGLPKVAYIDLQKNHIA-I 352

Query: 608 IPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN 667
           I      K    L+ L+L  N L      T       +  + LSGN+L  +   +L    
Sbjct: 353 IQDQ-TFKFLEKLQTLDLRDNAL------TTIHFIPSIPDIFLSGNKLVTLPKINLT--- 402

Query: 668 MLQVLDLRSNYISDNFPCW-LRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLAC 726
              ++ L  N + +    + L     LQ+L+L  N FS   S  +     P L+ + L  
Sbjct: 403 -ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS-SCSGDQTPSENPSLEQLFLGE 460

Query: 727 NKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNI 786
           N     L   W   +     +  S +  L +    N    +   V      ++ L     
Sbjct: 461 NM----LQLAWETELCWDVFEGLSHLQVLYLN--HNYLNSLPPGVFSHLTALRGL----- 509

Query: 787 FTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS 846
                 +SN     +        +L  L++S N L    P  F +L  +   D++ N   
Sbjct: 510 ----SLNSNRLTV-LSHND-LPANLEILDISRNQLLAPNPDVFVSLSVL---DITHNKFI 560

Query: 847 GKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNK 891
            +         F++ LN +   + G       +    P S+ G  
Sbjct: 561 CECELS----TFINWLNHTNVTIAGP---PADIYCVYPDSFSGVS 598

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  123 bits (310), Expect = 7e-29
 Identities = 72/338 (21%), Positives = 114/338 (33%), Gaps = 23/338 (6%)

Query: 541 SPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLS 600
           S +     Y   N T +P  +    + TE      + N +  V   S       Q+L+L 
Sbjct: 3   SFDGRIAFYRFCNLTQVPQVL----NTTERLLL--SFNYIRTVTASSFPFLEQLQLLELG 56

Query: 601 NNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVV- 659
           +     TI      ++   L +L+LG + +   L    F G   L  L L    L   V 
Sbjct: 57  SQYTPLTIDKEAF-RNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 660 -PKSLANCNMLQVLDLRSNYISD-NFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWP 717
                 N   L  LDL  N I            +SL+ +   SN            +   
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174

Query: 718 LLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEV----NHLGIEMPSNQFYEVRVTVTV 773
            L    LA N    R+S  W   M          +    N   +++  N          +
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN------AI 228

Query: 774 KGIEIKLLKVPNIFTSIDFSSNNFEGPIP--VEMGRFRSLYALNMSHNALTGSIPSSFGN 831
              +   L + +      F  +N + P           S+  L++SH  +       F  
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288

Query: 832 LKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
           LK+++ L+L+ N ++         L+ L VLNLSYN L
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  170 bits (432), Expect = 5e-45
 Identities = 87/503 (17%), Positives = 176/503 (34%), Gaps = 39/503 (7%)

Query: 222 LTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPN--FPKNSSLRDLILS 279
              +K+LDLS   +       +     L+ L L  +++   ++    F    SL  L LS
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLS 82

Query: 280 HTGLSGTLPDSIGNLENLTRVEVSSCNFTG-PIPPSMANLTQLFHMDFSSNHFFGPIP-- 336
              LS       G L +L  + +    +    +     NLT L  +   +   F  I   
Sbjct: 83  DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 337 SLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEML 396
                 +LN L++   +L    S +  + + ++  + L  +  +  +     +L ++  L
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSL-KSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 397 QLSNNQFE--NQLPEISNVSSSVLFDLDLSGNRLEG------PVPISIFFELRNLYTLDL 448
           +L +         P   +  SS +  L   G+ L           +    EL  +   D 
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 449 SSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSH 508
           + N       + S   +         +  L I    +  ++           +K + + +
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY--SLLEKVKRITVEN 319

Query: 509 NLVVSLQEP--YSISGIRFLDLHSNQLRGNIPYMS------PNTSYVDYSNNNFTSIPAD 560
           + V  +       +  + FLDL  N +       S      P+   +  S N+  S+   
Sbjct: 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379

Query: 561 IGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTL 620
               ++         + N+    +P+S       + L+LS+  +   +  C+       L
Sbjct: 380 GEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQT----L 433

Query: 621 EVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYIS 680
           EVL++  NNL+     +       LQ L +S N+L+ +     +   +L V+ +  N + 
Sbjct: 434 EVLDVSNNNLD-----SFSLFLPRLQELYISRNKLKTL--PDASLFPVLLVMKISRNQLK 486

Query: 681 DNFPCWLRNASSLQVLVLRSNNF 703
                     +SLQ + L +N +
Sbjct: 487 SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  165 bits (419), Expect = 3e-43
 Identities = 108/579 (18%), Positives = 183/579 (31%), Gaps = 92/579 (15%)

Query: 83  QIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSG--IVPIEYSYTVWIANL 140
            IPS L     +  L+LS          ++ +   L  L L    I  IE          
Sbjct: 19  SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD-------- 68

Query: 141 SLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSG-PINHYLAKSR 199
                +L  L  L L    LS+  + W      L +L+ L+L G       +        
Sbjct: 69  --AFYSLGSLEHLDLSDNHLSSLSSSW---FGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 200 SLSVIRLHYNYGLSS-GTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQ 258
           +L  +R+      S       A LT+L  L++    L+    + +  +  +  L L +++
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 259 LLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANL 318
                       SS+R L L  T L+      +   E  + ++  +   +     S   L
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 319 TQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNS 378
            +L       +              LN L     + S  +S     + + ++ + +    
Sbjct: 244 LKLLRYILELSEV------EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 379 LSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFF 438
           L   +     LL  ++ + + N++                             VP S   
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFL--------------------------VPCSFSQ 331

Query: 439 ELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGS 498
            L++L  LDLS N      L +S             L  L +S N +          +  
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSAC-----KGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

Query: 499 GNLKFLNLSHNLVVSLQE-PYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSI 557
            NL  L++S N    + +       +RFL+L S  +R     +      +D SNNN  S 
Sbjct: 387 KNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF 446

Query: 558 PADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSS 617
              +                                 Q L +S N L  T+P   +    
Sbjct: 447 SLFL------------------------------PRLQELYISRNKLK-TLPDASLFPV- 474

Query: 618 STLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQ 656
             L V+ + RN L  ++ D IF     LQ + L  N   
Sbjct: 475 --LLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  143 bits (363), Expect = 4e-36
 Identities = 90/452 (19%), Positives = 148/452 (32%), Gaps = 47/452 (10%)

Query: 65  DLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTE-ISSLTRLVTLDL 123
            L  L+ LNL    ++   + S   NLTNL  L +       EI     + LT L  L++
Sbjct: 96  PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 124 SGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLS 183
             +    Y            L+++ ++  L L   + +            L +++ L L 
Sbjct: 156 KALSLRNYQSQS--------LKSIRDIHHLTLHLSESAFLLEI---FADILSSVRYLELR 204

Query: 184 GCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKI 243
             +L+      L      S ++     G     E    L  L    L    ++       
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------F 258

Query: 244 LHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVS 303
                    D + ++    S     +  ++R L +    L   L      LE + R+ V 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 304 SCNFTGPIPPSMANLTQLFHMDFSSNHF----FGPIPSLHKSRNLNNLDLSFNNLS--GG 357
           +            +L  L  +D S N                 +L  L LS N+L     
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 358 ISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSV 417
                   L NL  + +  N+    +P S      +  L LS+      +  +       
Sbjct: 379 TGEIL-LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS----TGIRVVKTCIPQT 432

Query: 418 LFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSV 477
           L  LD+S N L+     S    L  L  L +S NK   L          P       L V
Sbjct: 433 LEVLDVSNNNLD-----SFSLFLPRLQELYISRNKLKTL----------PDASLFPVLLV 477

Query: 478 LDISDNQISGEVPNWIWEVGSGNLKFLNLSHN 509
           + IS NQ+   VP+ I++    +L+ + L  N
Sbjct: 478 MKISRNQLK-SVPDGIFD-RLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  141 bits (358), Expect = 2e-35
 Identities = 85/607 (14%), Positives = 169/607 (27%), Gaps = 110/607 (18%)

Query: 247 PTLETLDLSINQLLQGSLPNFPKN--SSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSS 304
                 D              P    ++++ L LS   ++      +    NL  + + S
Sbjct: 5   DASGVCDGRSRSFTS-----IPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 305 CNFTGPIPPSMANLTQLFHMDFSSNHFFG-PIPSLHKSRNLNNLDLSFNNLSGGISSTFW 363
                    +  +L  L H+D S NH             +L  L+L  N       ++ +
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 364 EQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQLSNNQFENQLPEISNVSSSVLFDLD 422
             L NLQ + +G+      I R  F  L +L  L++      N     S  S   +  L 
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLT 178

Query: 423 LSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISD 482
           L  +     +       L ++  L+L     +R + +      +     +       ++D
Sbjct: 179 LHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 483 NQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSP 542
              +  +    + +    ++F + + N +       S        + +  +R        
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL------ 291

Query: 543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNN 602
                                                               + + + N+
Sbjct: 292 -----HIPQFYLFYDL--------------------------STVYSLLEKVKRITVENS 320

Query: 603 NLSGTIPACLITKSSSTLEVLNLGRNNL-NGTLSDTIFPGDCG-LQILDLSGNQLQGVVP 660
            +   +P C  ++   +LE L+L  N +    L ++   G    LQ L LS N L+ +  
Sbjct: 321 KVF-LVP-CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 661 KSLANCNM--LQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPL 718
                  +  L  LD+  N      P   +    ++ L L S                  
Sbjct: 379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR---VVKTC--IPQT 432

Query: 719 LQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEI 778
           L+++D++ N                             + +P                  
Sbjct: 433 LEVLDVSNNNLD-----------------------SFSLFLPR----------------- 452

Query: 779 KLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESL 838
                      +  S N  +  +P +   F  L  + +S N L       F  L  ++ +
Sbjct: 453 --------LQELYISRNKLKT-LP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502

Query: 839 DLSMNNL 845
            L  N  
Sbjct: 503 WLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (300), Expect = 3e-28
 Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 40/403 (9%)

Query: 473 SQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEP--YSISGIRFLDLHS 530
               V D      +  +P+ +    +  +K L+LS N +  +      + + ++ L L S
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL----TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 531 NQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCK 590
           +++                      +I  D    +   E+     ++N L+ +       
Sbjct: 60  SRI---------------------NTIEGDAFYSLGSLEHLDL--SDNHLSSLSSSWFGP 96

Query: 591 ATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDL 650
            ++ + L+L  N    T+    +  + + L+ L +G       +    F G   L  L++
Sbjct: 97  LSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 651 SGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCP 710
               L+    +SL +   +  L L  +  +     +    SS++ L LR  N +     P
Sbjct: 156 KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP 215

Query: 711 RNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIE-MPSNQFYEVRV 769
                                  S   LL ++    +   E++ +  +    N   +   
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLL----RYILELSEVEFDDCTLNGLGDFNP 271

Query: 770 TVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSF 829
           + +    E+  ++   I   +          +         +  + + ++ +     S  
Sbjct: 272 SESDVVSELGKVETVTI-RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330

Query: 830 GNLKEIESLDLSMNNLSGKI---PAQLASLNFLSVLNLSYNNL 869
            +LK +E LDLS N +  +     A   +   L  L LS N+L
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  107 bits (270), Expect = 2e-24
 Identities = 76/505 (15%), Positives = 156/505 (30%), Gaps = 82/505 (16%)

Query: 374 LGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVP 433
               S + SIP  L     ++ L LS N+    +      + + L  L L  +R+   + 
Sbjct: 12  GRSRSFT-SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINT-IE 66

Query: 434 ISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWI 493
              F+ L +L  LDLS N  S L  +             S L  L++  N     +    
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSS--------WFGPLSSLKYLNLMGNPYQ-TLGVTS 117

Query: 494 WEVGSGNLKFLNLSHNLVVSLQEPYSISGI---RFLDLHSNQLRGNIPYM---SPNTSYV 547
                 NL+ L + +    S       +G+     L++ +  LR           +  ++
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 548 DYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGT 607
               +    +     + +S   Y      + +LA      +        +          
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLEL--RDTNLARFQFSPLPVDEVSSPMKKLAFRG--- 232

Query: 608 IPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN 667
                +    S  E+L L R  L   LS+  F       + D + ++   V         
Sbjct: 233 ----SVLTDESFNELLKLLRYILE--LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286

Query: 668 MLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACN 727
            ++ L +   Y+  +          ++ + + ++     + C  ++     L+ +DL+ N
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ-HLKSLEFLDLSEN 344

Query: 728 KFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIF 787
                          +  +        L                                
Sbjct: 345 LMV---------EEYLKNSACKGAWPSL-------------------------------- 363

Query: 788 TSIDFSSNNFEGPIPVEMGRF---RSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNN 844
            ++  S N+    +          ++L +L++S N     +P S    +++  L+LS   
Sbjct: 364 QTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421

Query: 845 LSGKIPAQLASLNFLSVLNLSYNNL 869
           +   +   +     L VL++S NNL
Sbjct: 422 IR-VVKTCI--PQTLEVLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 91.3 bits (227), Expect = 3e-19
 Identities = 59/334 (17%), Positives = 119/334 (35%), Gaps = 25/334 (7%)

Query: 65  DLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAG--EIPTEISSLTRLVTLD 122
           +L+        F+     ++ S +          L+   F    ++   I  L+ +   D
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPM-KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 123 LSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLS--ASGTEWCKALSFLPNLQVL 180
            +           +  + S  +  L ++  + + R+ +       +     S L  ++ +
Sbjct: 261 CTL-----NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 181 SLSGCDLSGPINHYLAKSRSLSVIRLHYN---YGLSSGTEFLAHLTNLKALDLSECGLQ- 236
           ++    +      +    +SL  + L  N         +       +L+ L LS+  L+ 
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375

Query: 237 -GKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLE 295
             K  E +L +  L +LD+S N        +      +R L LS TG+   +   I   +
Sbjct: 376 MQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQ 431

Query: 296 NLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLS 355
            L  ++VS+ N           L +L  +  S N     +P       L  + +S N L 
Sbjct: 432 TLEVLDVSNNNLDS-FS---LFLPRLQELYISRNKLKT-LPDASLFPVLLVMKISRNQLK 486

Query: 356 GGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL 389
             +    +++L +LQ + L  N    S PR  +L
Sbjct: 487 S-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 519

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 809 RSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSG-KIPAQLASLNFLSVLNLSYN 867
            SL  L++S N L+    S FG L  ++ L+L  N      + +   +L  L  L +   
Sbjct: 74  GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 868 NLVGKIPTST 877
               +I    
Sbjct: 134 ETFSEIRRID 143

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  166 bits (423), Expect = 2e-44
 Identities = 94/500 (18%), Positives = 174/500 (34%), Gaps = 90/500 (18%)

Query: 219 LAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLIL 278
             ++ +      +    +   P        +    L               +    +L L
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-----------LDRQAHELEL 78

Query: 279 SHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSL 338
           ++ GLS +LP+   +LE+L     +SCN    +P    +L  L   + +        P L
Sbjct: 79  NNLGLS-SLPELPPHLESLV----ASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLL 133

Query: 339 HKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQL 398
                   L +S N L         +    L+I+ + +NSL   +P      P+LE +  
Sbjct: 134 EY------LGVSNNQLE---KLPELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAA 180

Query: 399 SNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKL 458
            NNQ E  LPE+ N+    L  +    N L+      +     +L ++   +N    L  
Sbjct: 181 GNNQLEE-LPELQNLPF--LTAIYADNNSLK-----KLPDLPLSLESIVAGNNILEEL-- 230

Query: 459 ASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPY 518
                   P L+N   L+ +   +N +   +P+        +L+ LN+  N +  L  P 
Sbjct: 231 --------PELQNLPFLTTIYADNNLLK-TLPDLP-----PSLEALNVRDNYLTDL--PE 274

Query: 519 SISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANN 578
               + FLD+  N     +  + PN  Y++ S+N   S+     +            +NN
Sbjct: 275 LPQSLTFLDVSENIFS-GLSELPPNLYYLNASSNEIRSLCDLPPSLEE------LNVSNN 327

Query: 579 SLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLN------G 632
            L   +P         + L  S N+L+  +P          L+ L++  N L        
Sbjct: 328 KLI-ELPALPP---RLERLIASFNHLA-EVPELP-----QNLKQLHVEYNPLREFPDIPE 377

Query: 633 TLSD-------TIFPGDCG-LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFP 684
           ++ D          P     L+ L +  N L+   P    +   ++ L + S  + D + 
Sbjct: 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYE 433

Query: 685 CWLRNASSLQVLVLRSNNFS 704
                   L+  V   ++  
Sbjct: 434 FAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  149 bits (379), Expect = 8e-39
 Identities = 81/471 (17%), Positives = 174/471 (36%), Gaps = 81/471 (17%)

Query: 270 NSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSN 329
           N+ L++ +   + L+  +P    N+++ T    +   +    PP      ++        
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 330 HFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL 389
                       R  + L+L+   L     S+  E   +L+ +V   NSL+  +P     
Sbjct: 69  ----------LDRQAHELELNNLGL-----SSLPELPPHLESLVASCNSLT-ELPELPQS 112

Query: 390 LPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLS 449
           L +L +   +     +  P         L  L +S N+LE    +        L  +D+ 
Sbjct: 113 LKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLEK---LPELQNSSFLKIIDVD 161

Query: 450 SNKFSR----------LKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSG 499
           +N   +          +   +++   +P L+N   L+ +   +N +  ++P+        
Sbjct: 162 NNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-KLPDLP-----L 215

Query: 500 NLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPA 559
           +L+ +   +N++  L E  ++  +  +   +N L+  +P + P+   ++  +N  T +P 
Sbjct: 216 SLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPE 274

Query: 560 DIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSST 619
              +            + N  +G + E      N   L+ S+N +  ++          +
Sbjct: 275 LPQSLTF------LDVSENIFSG-LSELP---PNLYYLNASSNEIR-SLCDLP-----PS 318

Query: 620 LEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYI 679
           LE LN+  N L   L          L+ L  S N L   VP+   N   L+ L +  N +
Sbjct: 319 LEELNVSNNKLI-ELPALP----PRLERLIASFNHLA-EVPELPQN---LKQLHVEYNPL 369

Query: 680 SDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFS 730
              FP    +   L++    +++ +     P+N      L+ + +  N   
Sbjct: 370 R-EFPDIPESVEDLRM----NSHLAEVPELPQN------LKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  147 bits (374), Expect = 4e-38
 Identities = 92/495 (18%), Positives = 169/495 (34%), Gaps = 76/495 (15%)

Query: 83  QIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSL 142
           ++P    N+ + T    +   +    P        +    L   +  +         L L
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ------AHELEL 78

Query: 143 FLQNLTELTEL--HLDRVDLSASG-TEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSR 199
               L+ L EL  HL+ +  S +  TE  +    L +L V + +   LS           
Sbjct: 79  NNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP------- 131

Query: 200 SLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQL 259
            L  + +  N  L    E   + + LK +D+    L+ K P+     P+LE +    NQL
Sbjct: 132 LLEYLGVSNN-QLEKLPEL-QNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQL 185

Query: 260 LQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLT 319
               LP       L  +   +  L   LPD   +LE++      +        P + NL 
Sbjct: 186 --EELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESIV---AGNNILE--ELPELQNLP 237

Query: 320 QLFHMDFSSNHFFGPIPSLHKS-RNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNS 378
            L  +   +N     + +L     +L  L++  N L     +   E   +L  + +  N 
Sbjct: 238 FLTTIYADNNL----LKTLPDLPPSLEALNVRDNYL-----TDLPELPQSLTFLDVSENI 288

Query: 379 LSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFF 438
            S  +     L PNL  L  S+N+  +      +     L +L++S N+L       +  
Sbjct: 289 FS-GLSE---LPPNLYYLNASSNEIRSLCDLPPS-----LEELNVSNNKLI-----ELPA 334

Query: 439 ELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGS 498
               L  L  S N  + +      P           L  L +  N +  E P+       
Sbjct: 335 LPPRLERLIASFNHLAEV------PELP------QNLKQLHVEYNPLR-EFPDIP----- 376

Query: 499 GNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIP 558
            +++ L ++ +L    + P     ++ L + +N LR   P +  +   +  ++       
Sbjct: 377 ESVEDLRMNSHL---AEVPELPQNLKQLHVETNPLR-EFPDIPESVEDLRMNSERVVDPY 432

Query: 559 ADIGNFMSETEYFYF 573
                   + E   F
Sbjct: 433 EFAHETTDKLEDDVF 447

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (262), Expect = 1e-23
 Identities = 84/517 (16%), Positives = 163/517 (31%), Gaps = 168/517 (32%)

Query: 365 QLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLP------------EISN 412
               LQ  +   ++L+  +P     + +      + +++E   P             + +
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 413 VSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQ 472
                  +L+L+   L      S+     +L +L  S N  + L      P     LK+ 
Sbjct: 68  CLDRQAHELELNNLGLS-----SLPELPPHLESLVASCNSLTEL------PELPQSLKS- 115

Query: 473 SQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQ 532
             L V + +   +S   P          L++L +S+N +  L E  + S ++ +D+ +N 
Sbjct: 116 --LLVDNNNLKALSDLPPL---------LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS 164

Query: 533 LRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKAT 592
           L+  +P + P+  ++   NN    +P ++ N                             
Sbjct: 165 LK-KLPDLPPSLEFIAAGNNQLEELP-ELQNL---------------------------P 195

Query: 593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG 652
               +   NN+L   +P                                   L+ +    
Sbjct: 196 FLTAIYADNNSLK-KLPDLP------------------------------LSLESIVAGN 224

Query: 653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRN 712
           N L+      L N   L  +   +N +    P    +   L+ L +R N  +     P++
Sbjct: 225 NILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLTDLPELPQS 278

Query: 713 KVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVT 772
                 L  +D++ N FS                                          
Sbjct: 279 ------LTFLDVSENIFS------------------------------------------ 290

Query: 773 VKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNL 832
                  L ++P     ++ SSN     +        SL  LN+S+N L   +P+    L
Sbjct: 291 ------GLSELPPNLYYLNASSNEIRS-LCDLPP---SLEELNVSNNKLI-ELPALPPRL 339

Query: 833 KEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
           +    L  S N+L+ ++P    +L     L++ YN L
Sbjct: 340 ER---LIASFNHLA-EVPELPQNL---KQLHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (251), Expect = 2e-22
 Identities = 84/495 (16%), Positives = 158/495 (31%), Gaps = 97/495 (19%)

Query: 383 IPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRN 442
           I         L+     ++       E  NV S    +   + +  E   P     E R 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKS--KTEYYNAWSEWERNAPPGN-GEQRE 59

Query: 443 LYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLK 502
           +    L                         Q   L++++  +S  +P         +L+
Sbjct: 60  MAVSRLRDCL-------------------DRQAHELELNNLGLS-SLPELP-----PHLE 94

Query: 503 FLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIG 562
            L  S N +  L  P     ++ L + +N L+  +  + P   Y+  SNN    +P ++ 
Sbjct: 95  SLVASCNSLTEL--PELPQSLKSLLVDNNNLK-ALSDLPPLLEYLGVSNNQLEKLP-ELQ 150

Query: 563 NFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEV 622
           N             NNSL   +P+      + + +   NN L   +P      +   L  
Sbjct: 151 NSSFLKI---IDVDNNSLK-KLPDLP---PSLEFIAAGNNQLE-ELPELQ---NLPFLTA 199

Query: 623 LNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDN 682
           +    N+L       +      L+ +    N L+      L N   L  +   +N +   
Sbjct: 200 IYADNNSLK-----KLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-T 251

Query: 683 FPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMM 742
            P    +   L+ L +R N  +     P++      L + +   +  S      + L   
Sbjct: 252 LPDLPPS---LEALNVRDNYLTDLPELPQS---LTFLDVSENIFSGLSELPPNLYYLNA- 304

Query: 743 VAETKSGSEVNHLGIEMPS--------NQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSS 794
                S +E+  L    PS        N+  E+           +L         +  S 
Sbjct: 305 -----SSNEIRSLCDLPPSLEELNVSNNKLIELPALPP------RL-------ERLIASF 346

Query: 795 NNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLA 854
           N+    +P       +L  L++ +N L    P    +++     DL MN+   ++P    
Sbjct: 347 NHLAE-VPELPQ---NLKQLHVEYNPLR-EFPDIPESVE-----DLRMNSHLAEVPELPQ 396

Query: 855 SLNFLSVLNLSYNNL 869
           +   L  L++  N L
Sbjct: 397 N---LKQLHVETNPL 408

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 85.0 bits (211), Expect = 2e-17
 Identities = 62/339 (18%), Positives = 111/339 (32%), Gaps = 61/339 (17%)

Query: 69  LQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVP 128
           L+ +  G    +  ++P  L NL  LT +          +         L ++       
Sbjct: 175 LEFIAAGNNQLE--ELPE-LQNLPFLTAIYADNN----SLKKLPDLPLSLESIVAGN--- 224

Query: 129 IEYSYTVWIANLSLF--LQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCD 186
                      L     LQNL  LT ++ D   L              P+L+ L++    
Sbjct: 225 ---------NILEELPELQNLPFLTTIYADNNLLKTLPDL-------PPSLEALNVRDNY 268

Query: 187 LSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHV 246
           L           +SL+ + +  N      +       NL  L+ S   ++    +     
Sbjct: 269 L----TDLPELPQSLTFLDVSEN----IFSGLSELPPNLYYLNASSNEIR-SLCDLP--- 316

Query: 247 PTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCN 306
           P+LE L++S N+L+   LP  P    L  LI S   L+  +P+   NL+ L    V    
Sbjct: 317 PSLEELNVSNNKLI--ELPALPPR--LERLIASFNHLA-EVPELPQNLKQL---HVEYNP 368

Query: 307 FTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQL 366
                P    ++  L       N     +P L   +NL  L +  N L       F +  
Sbjct: 369 LRE-FPDIPESVEDL-----RMNSHLAEVPEL--PQNLKQLHVETNPLR-----EFPDIP 415

Query: 367 LNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFEN 405
            +++ + +    +      +      LE     ++   +
Sbjct: 416 ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 69.6 bits (171), Expect = 2e-12
 Identities = 57/339 (16%), Positives = 101/339 (29%), Gaps = 82/339 (24%)

Query: 550 SNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIP 609
            ++N T +P +  N  S+TEY+    A +      P    +     V  L +        
Sbjct: 19  HSSNLTEMPVEAENVKSKTEYY---NAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ--- 72

Query: 610 ACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCG-LQILDLSGNQLQGVVPKSLANCNM 668
                        L L    L      +  P     L+ L  S N L   +P+   +   
Sbjct: 73  ----------AHELELNNLGL------SSLPELPPHLESLVASCNSLT-ELPELPQSLKS 115

Query: 669 LQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSG--HISCPRNKVSWPLLQIVDLAC 726
           L V +     +SD  P        L+ L + +N       +           L+I+D+  
Sbjct: 116 LLVDNNNLKALSDLPP-------LLEYLGVSNNQLEKLPELQNSSF------LKIIDVDN 162

Query: 727 NKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNI 786
           N           L               +                       +L ++P +
Sbjct: 163 NSLKKLPDLPPSLE-------------FIAAG------------------NNQLEELPEL 191

Query: 787 F-----TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLS 841
                 T+I   +N+ +  +P       SL ++   +N L         NL  + ++   
Sbjct: 192 QNLPFLTAIYADNNSLKK-LPDLPL---SLESIVAGNNILE--ELPELQNLPFLTTIYAD 245

Query: 842 MNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQ 880
            N L   +P    SL  L+V +    +L     + T L 
Sbjct: 246 NNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLD 283

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 44/244 (18%)

Query: 645 LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS 704
           LQ      + L   +P    N           +    N P        + V  LR     
Sbjct: 13  LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71

Query: 705 G--HISCPRNK-----VSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGI 757
               +              P L+ +  +CN  +  L +  L   + +     + +  L  
Sbjct: 72  QAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPE--LPQSLKSLLVDNNNLKALS- 127

Query: 758 EMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMS 817
                                    +P +   +  S+N  E  +P E+     L  +++ 
Sbjct: 128 ------------------------DLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD 161

Query: 818 HNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTST 877
           +N+L   +P    +L   E +    N L  ++P +L +L FL+ +    N+L        
Sbjct: 162 NNSLK-KLPDLPPSL---EFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKLPDLPL 215

Query: 878 QLQS 881
            L+S
Sbjct: 216 SLES 219

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  164 bits (418), Expect = 1e-43
 Identities = 104/525 (19%), Positives = 187/525 (35%), Gaps = 86/525 (16%)

Query: 88  LGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNL 147
              L       L +      +    + L ++ TL    +          I ++   ++ L
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL---------GIKSID-GVEYL 67

Query: 148 TELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLH 207
             LT+++     L+         L  L  L  + ++   ++                   
Sbjct: 68  NNLTQINFSNNQLTDI-----TPLKNLTKLVDILMNNNQIADITP--------------- 107

Query: 208 YNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNF 267
                      LA+LTNL  L L    +     + + ++  L  L+LS N +    +   
Sbjct: 108 -----------LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISAL 152

Query: 268 PKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFS 327
              +SL+ L   +          + NL  L R+++SS   +      +A LT L  +  +
Sbjct: 153 SGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 207

Query: 328 SNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSL 387
           +N     I  L    NL+ L L+ N L   I +     L NL  + L +N +S   P  L
Sbjct: 208 NNQISD-ITPLGILTNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISNLAP--L 261

Query: 388 FLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLD 447
             L  L  L+L  NQ  N +  ++ +++  L +L+L+ N+LE   PIS    L+NL  L 
Sbjct: 262 SGLTKLTELKLGANQISN-ISPLAGLTA--LTNLELNENQLEDISPIS---NLKNLTYLT 315

Query: 448 LSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGS-GNLKFLNL 506
           L  N  S           I  + + ++L  L   +N++S      +  + +  N+ +L+ 
Sbjct: 316 LYFNNISD----------ISPVSSLTKLQRLFFYNNKVSD-----VSSLANLTNINWLSA 360

Query: 507 SHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVD--YSNNNFTSIPADIGNF 564
            HN +  L    +++ I  L L+             N S  +   +       PA I + 
Sbjct: 361 GHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDG 420

Query: 565 MSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIP 609
                Y       N  +    E     +    +       SGT+ 
Sbjct: 421 ---GSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  158 bits (403), Expect = 9e-42
 Identities = 100/485 (20%), Positives = 186/485 (38%), Gaps = 62/485 (12%)

Query: 57  LENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLT 116
           + +     DL  + +L        G +    +  L NLT +N S        P  + +LT
Sbjct: 36  VTDTVSQTDLDQVTTLQADR---LGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLT 90

Query: 117 RLVTLDLSG--IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFL 174
           +LV + ++   I  I              L NLT LT L L    ++         L  L
Sbjct: 91  KLVDILMNNNQIADITP------------LANLTNLTGLTLFNNQITDI-----DPLKNL 133

Query: 175 PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECG 234
            NL  L LS   +S      L+   SL  +         +  + LA+LT L+ LD+S   
Sbjct: 134 TNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQ---VTDLKPLANLTTLERLDISSNK 188

Query: 235 LQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNL 294
           +       +  +  LE+L  + NQ+    +      ++L +L L+   L      ++ +L
Sbjct: 189 VSD--ISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNGNQLKD--IGTLASL 242

Query: 295 ENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNL 354
            NLT +++++   +   P  ++ LT+L  +   +N     I  L     L NL+L+ N L
Sbjct: 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQL 299

Query: 355 SGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVS 414
                 +    L NL  + L  N++S   P  +  L  L+ L   NN+  + +  ++N++
Sbjct: 300 E---DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-VSSLANLT 353

Query: 415 SSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQ 474
           +  +  L    N++    P++    L  +  L L+   ++   +            N S 
Sbjct: 354 N--INWLSAGHNQISDLTPLA---NLTRITQLGLNDQAWTNAPVN--------YKANVSI 400

Query: 475 LSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQE-PYSISGIRFLDLHSNQL 533
            + +      +    P  I +   G+    +++ NL     E  Y+ S    +   +   
Sbjct: 401 PNTVKNVTGALI--APATISD--GGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTF 456

Query: 534 RGNIP 538
            G + 
Sbjct: 457 SGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  157 bits (400), Expect = 2e-41
 Identities = 94/474 (19%), Positives = 182/474 (38%), Gaps = 47/474 (9%)

Query: 190 PINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTL 249
           PIN     +     ++        + T     L  +  L     G++    + + ++  L
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNL 70

Query: 250 ETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTG 309
             ++ S NQL    +      + L D+++++  ++      + NL NLT + + +   T 
Sbjct: 71  TQINFSNNQL--TDITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD 126

Query: 310 PIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNL 369
             P  + NLT L  ++ SSN     I +L    +L  L    N ++          L  L
Sbjct: 127 IDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVTDLKPL---ANLTTL 179

Query: 370 QIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLE 429
           + + +  N +S      L  L NLE L  +NNQ  + +  +  +++  L +L L+GN+L+
Sbjct: 180 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD-ITPLGILTN--LDELSLNGNQLK 234

Query: 430 GPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEV 489
               I     L NL  LDL++N+ S           +  L   ++L+ L +  NQIS   
Sbjct: 235 D---IGTLASLTNLTDLDLANNQISN----------LAPLSGLTKLTELKLGANQISNIS 281

Query: 490 PNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMS-PNTSYVD 548
           P      G   L  L L+ N +  +    ++  + +L L+ N +    P  S      + 
Sbjct: 282 PL----AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLF 337

Query: 549 YSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTI 608
           + NN  + + + + N    T   +  A +N ++ + P  +   T    L L++   +   
Sbjct: 338 FYNNKVSDVSS-LANL---TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-- 389

Query: 609 PACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKS 662
                    + + + N  +N     ++             D++ N        S
Sbjct: 390 ---APVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVS 440

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  147 bits (372), Expect = 9e-38
 Identities = 103/509 (20%), Positives = 191/509 (37%), Gaps = 69/509 (13%)

Query: 248 TLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNF 307
            L +  ++ +  +   +      +     +L  T ++ T+     +L+ +T ++      
Sbjct: 2   PLGSATITQDTPIN-QIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 308 TGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLL 367
                  +  L  L  ++FS+N     I  L     L ++ ++ N ++     T    L 
Sbjct: 59  K--SIDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIA---DITPLANLT 112

Query: 368 NLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNR 427
           NL  + L +N ++   P  L  L NL  L+LS+N   + +  +S ++S  L  L    N+
Sbjct: 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTS--LQQLSFG-NQ 166

Query: 428 LEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISG 487
           +    P++    L  L  LD+SSNK S           I +L   + L  L  ++NQIS 
Sbjct: 167 VTDLKPLA---NLTTLERLDISSNKVSD----------ISVLAKLTNLESLIATNNQISD 213

Query: 488 EVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTS-- 545
             P         NL  L+L+ N +  +    S++ +  LDL +NQ+  N+  +S  T   
Sbjct: 214 ITPLG----ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLT 268

Query: 546 YVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLS 605
            +    N  ++I   +   ++           N L  + P  +    N   L L  NN+S
Sbjct: 269 ELKLGANQISNISP-LAG-LTALTNLEL--NENQLEDISP--ISNLKNLTYLTLYFNNIS 322

Query: 606 GTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLAN 665
              P   +TK    L+ L    N ++     +       +  L    NQ+  + P  LAN
Sbjct: 323 DISPVSSLTK----LQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLTP--LAN 373

Query: 666 CNMLQVLDLRSNYISDNFPCWLRNASSLQVL-----------------VLRSNNFSGHIS 708
              +  L L     ++    +  N S    +                      + + ++ 
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLP 433

Query: 709 CPRNKVS--WPLLQIVDLACNKFSGRLSQ 735
              N+VS  +     +      FSG ++Q
Sbjct: 434 SYTNEVSYTFSQPVTIGKGTTTFSGTVTQ 462

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  121 bits (306), Expect = 3e-29
 Identities = 93/531 (17%), Positives = 179/531 (33%), Gaps = 125/531 (23%)

Query: 344 LNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQF 403
           L +  ++ +     I +     L      VLG  +++ ++      L  +  LQ      
Sbjct: 3   LGSATITQDTPINQIFTD--TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 404 ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKP 463
           ++ +  +  +++  L  ++ S N+L     I+    L  L  + +++N+ +         
Sbjct: 59  KS-IDGVEYLNN--LTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIAD-------- 104

Query: 464 RAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGS-GNLKFLNLSHNLVVSLQEPYSISG 522
             I  L N + L+ L + +NQI+      I  + +  NL  L LS N +  +     ++ 
Sbjct: 105 --ITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTS 157

Query: 523 IRFLDLHSNQLRGNIPYMS-PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLA 581
           ++ L    NQ+    P  +      +D S+N  + I   +                    
Sbjct: 158 LQQLSF-GNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKL----------------- 198

Query: 582 GVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNG--TLSDTIF 639
                     TN + L  +NN +S   P  ++T     L+ L+L  N L    TL+    
Sbjct: 199 ----------TNLESLIATNNQISDITPLGILTN----LDELSLNGNQLKDIGTLASLT- 243

Query: 640 PGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLR 699
                L  LDL+ NQ+  + P  L+    L  L L +N IS+  P  L   ++L  L L 
Sbjct: 244 ----NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295

Query: 700 SNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEM 759
            N           K     L  + L  N                      S+++ +    
Sbjct: 296 ENQLEDISPISNLK----NLTYLTLYFNNI--------------------SDISPVS--- 328

Query: 760 PSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHN 819
                                  +  +   + F +N       +      ++  L+  HN
Sbjct: 329 ----------------------SLTKL-QRLFFYNNKVSDVSSL--ANLTNINWLSAGHN 363

Query: 820 ALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 870
            ++   P    NL  I  L L+    +       A+++  + +      L+
Sbjct: 364 QISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 98.1 bits (245), Expect = 2e-21
 Identities = 76/410 (18%), Positives = 147/410 (35%), Gaps = 57/410 (13%)

Query: 466 IPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRF 525
           I      ++     +    ++  V     +     +  L      + S+     ++ +  
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDTVS----QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQ 72

Query: 526 LDLHSNQLRGNIPYMS-PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVI 584
           ++  +NQL    P  +      +  +NN    I   + N  + T        NN +  + 
Sbjct: 73  INFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLT---LFNNQITDID 128

Query: 585 PESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCG 644
           P  +   TN   L+LS+N +S       +T     L+ L+ G N +              
Sbjct: 129 P--LKNLTNLNRLELSSNTISDISALSGLTS----LQQLSFG-NQVTDLKPLANLTT--- 178

Query: 645 LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS 704
           L+ LD+S N++       LA    L+ L   +N ISD  P  L   ++L  L L  N   
Sbjct: 179 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-- 232

Query: 705 GHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQF 764
             +       S   L  +DLA N+ S       L  +               +++ +NQ 
Sbjct: 233 --LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE-------------LKLGANQI 277

Query: 765 YEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGS 824
             +            L  +  + T+++ + N  E   P+     ++L  L +  N ++  
Sbjct: 278 SNI----------SPLAGLTAL-TNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDI 324

Query: 825 IPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 874
            P    +L +++ L    N +S    + LA+L  ++ L+  +N +    P
Sbjct: 325 SP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.8 bits (200), Expect = 6e-16
 Identities = 75/388 (19%), Positives = 135/388 (34%), Gaps = 79/388 (20%)

Query: 500 NLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRG--NIPYMSPNTSYVDYSNNNFTSI 557
                 L    V        +  +  L      ++    + Y+  N + +++SNN  T I
Sbjct: 25  EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYL-NNLTQINFSNNQLTDI 83

Query: 558 PADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSS 617
              + N                            T    + ++NN ++   P   +T   
Sbjct: 84  TP-LKNL---------------------------TKLVDILMNNNQIADITPLANLTN-- 113

Query: 618 STLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSN 677
             L  L L  N +              L  L+LS N +  +   +L+    LQ L    N
Sbjct: 114 --LTGLTLFNNQITDIDPLKNLTN---LNRLELSSNTISDI--SALSGLTSLQQLSF-GN 165

Query: 678 YISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKW 737
            ++D  P  L N ++L+ L + SN     +S          L+ +    N+ S  ++   
Sbjct: 166 QVTDLKP--LANLTTLERLDISSNK----VSDISVLAKLTNLESLIATNNQISD-ITPLG 218

Query: 738 LLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNF 797
           +LT +              + +  NQ         +K I   L  + N+ T +D ++N  
Sbjct: 219 ILTNLDE------------LSLNGNQ---------LKDIGT-LASLTNL-TDLDLANNQI 255

Query: 798 EGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLN 857
               P+       L  L +  N ++   P     L  + +L+L+ N L    P  +++L 
Sbjct: 256 SNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLK 309

Query: 858 FLSVLNLSYNNLVGKIPTS--TQLQSFS 883
            L+ L L +NN+    P S  T+LQ   
Sbjct: 310 NLTYLTLYFNNISDISPVSSLTKLQRLF 337

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  146 bits (371), Expect = 1e-38
 Identities = 78/418 (18%), Positives = 152/418 (36%), Gaps = 73/418 (17%)

Query: 69  LQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVP 128
             +L          QI     +L       L +      +      L  +  L ++G   
Sbjct: 2   AATLATLPAPIN--QIFP-DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAG--- 53

Query: 129 IEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLS 188
                               ++  +               + + +L NL+ L+L+G  ++
Sbjct: 54  -------------------EKVASI---------------QGIEYLTNLEYLNLNGNQIT 79

Query: 189 GPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPT 248
                 L+    L+ + +  N    +    L +LTNL+ L L+E  +       + ++  
Sbjct: 80  DISP--LSNLVKLTNLYIGTN--KITDISALQNLTNLRELYLNEDNISD--ISPLANLTK 133

Query: 249 LETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFT 308
           + +L+L  N  L   L      + L  L ++ + +       I NL +L  + ++     
Sbjct: 134 MYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIE 190

Query: 309 GPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLN 368
              P  +A+LT L +     N     I  +     LN+L +  N ++     +    L  
Sbjct: 191 DISP--LASLTSLHYFTAYVNQITD-ITPVANMTRLNSLKIGNNKIT---DLSPLANLSQ 244

Query: 369 LQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRL 428
           L  + +G N +S     ++  L  L+ML + +NQ  + +  ++N+S   L  L L+ N+L
Sbjct: 245 LTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD-ISVLNNLSQ--LNSLFLNNNQL 299

Query: 429 EGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQIS 486
                + +   L NL TL LS N  +           I  L + S++   D ++  I 
Sbjct: 300 GN-EDMEVIGGLTNLTTLFLSQNHIT----------DIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  140 bits (355), Expect = 2e-36
 Identities = 82/384 (21%), Positives = 147/384 (38%), Gaps = 42/384 (10%)

Query: 46  LDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFA 105
           L     PI           DL       L                L ++T L ++    A
Sbjct: 5   LATLPAPI----NQIFPDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKVA 57

Query: 106 GEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGT 165
                 I  LT L  L+L+G           I ++S  L NL +LT L++    ++    
Sbjct: 58  S--IQGIEYLTNLEYLNLNG---------NQITDIS-PLSNLVKLTNLYIGTNKITD--- 102

Query: 166 EWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNL 225
               AL  L NL+ L L+  ++S      LA    +  + L  N+   S    L+++T L
Sbjct: 103 --ISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANH-NLSDLSPLSNMTGL 157

Query: 226 KALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSG 285
             L ++E  ++      I ++  L +L L+ NQ+    +      +SL         ++ 
Sbjct: 158 NYLTVTESKVKD--VTPIANLTDLYSLSLNYNQI--EDISPLASLTSLHYFTAYVNQITD 213

Query: 286 TLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLN 345
                + N+  L  +++ +   T   P  +ANL+QL  ++  +N     I ++     L 
Sbjct: 214 --ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-INAVKDLTKLK 268

Query: 346 NLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFEN 405
            L++  N +S  IS      L  L  + L +N L       +  L NL  L LS N   +
Sbjct: 269 MLNVGSNQIS-DISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 406 QLPEISNVSSSVLFDLDLSGNRLE 429
            +  ++++S   +   D +   ++
Sbjct: 326 -IRPLASLSK--MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (336), Expect = 6e-34
 Identities = 69/390 (17%), Positives = 147/390 (37%), Gaps = 63/390 (16%)

Query: 316 ANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLG 375
           A+L +              +    +  ++  L ++   ++   S    E L NL+ + L 
Sbjct: 19  ADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVA---SIQGIEYLTNLEYLNLN 74

Query: 376 HNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPIS 435
            N ++   P  L  L  L  L +  N+  + +  + N+++  L +L L+ + +    P++
Sbjct: 75  GNQITDISP--LSNLVKLTNLYIGTNKITD-ISALQNLTN--LRELYLNEDNISDISPLA 129

Query: 436 IFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWE 495
               L  +Y+L+L +N              +  L N + L+ L ++++++    P     
Sbjct: 130 ---NLTKMYSLNLGANHNLSD---------LSPLSNMTGLNYLTVTESKVKDVTPIA--- 174

Query: 496 VGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMS-PNTSYVDYSNNNF 554
               +L  L+L++N +  +    S++ + +   + NQ+    P  +    + +   NN  
Sbjct: 175 -NLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI 233

Query: 555 TSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLIT 614
           T +   + N                            +    L++  N +S  I A    
Sbjct: 234 TDLSP-LANL---------------------------SQLTWLEIGTNQIS-DINAV--- 261

Query: 615 KSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDL 674
           K  + L++LN+G N ++     ++      L  L L+ NQL     + +     L  L L
Sbjct: 262 KDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 675 RSNYISDNFPCWLRNASSLQVLVLRSNNFS 704
             N+I+D  P  L + S +      +    
Sbjct: 319 SQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  125 bits (316), Expect = 2e-31
 Identities = 69/367 (18%), Positives = 145/367 (39%), Gaps = 48/367 (13%)

Query: 344 LNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQF 403
              L      ++          L      VL   S++  +      L ++  L ++  + 
Sbjct: 2   AATLATLPAPIN---QIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 404 ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKP 463
            + +  I  +++  L  L+L+GN++     IS    L  L  L + +NK +         
Sbjct: 57  AS-IQGIEYLTN--LEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKITD-------- 102

Query: 464 RAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGS-GNLKFLNLSHNLVVSLQEPYS-IS 521
             I  L+N + L  L ++++ IS      I  + +   +  LNL  N  +S   P S ++
Sbjct: 103 --ISALQNLTNLRELYLNEDNISD-----ISPLANLTKMYSLNLGANHNLSDLSPLSNMT 155

Query: 522 GIRFLDLHSNQLRGNIPYMS-PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSL 580
           G+ +L +  ++++   P  +  +   +  + N    I   + + ++   YF      N +
Sbjct: 156 GLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LAS-LTSLHYFTA--YVNQI 211

Query: 581 AGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNG--TLSDTI 638
             + P  V   T    L + NN ++   P   +++    L  L +G N ++    + D  
Sbjct: 212 TDITP--VANMTRLNSLKIGNNKITDLSPLANLSQ----LTWLEIGTNQISDINAVKDLT 265

Query: 639 FPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL 698
                 L++L++  NQ+  +    L N + L  L L +N + +     +   ++L  L L
Sbjct: 266 -----KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 699 RSNNFSG 705
             N+ + 
Sbjct: 319 SQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (253), Expect = 3e-23
 Identities = 75/397 (18%), Positives = 142/397 (35%), Gaps = 55/397 (13%)

Query: 475 LSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLR 534
            + L      I+        +          L    V  +     +  I  L +   ++ 
Sbjct: 2   AATLATLPAPIN----QIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVA 57

Query: 535 GNIPYMS--PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKAT 592
            +I  +    N  Y++ + N  T I   + N   +    Y     N +      ++   T
Sbjct: 58  -SIQGIEYLTNLEYLNLNGNQITDISP-LSNL-VKLTNLYI--GTNKIT--DISALQNLT 110

Query: 593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG 652
           N + L L+ +N+S   P   +TK    +  LNLG N+    LS        GL  L ++ 
Sbjct: 111 NLRELYLNEDNISDISPLANLTK----MYSLNLGANHNLSDLSP--LSNMTGLNYLTVTE 164

Query: 653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRN 712
           ++++ V P  +AN   L  L L  N I D  P  L + +SL       N     I+    
Sbjct: 165 SKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ----ITDITP 216

Query: 713 KVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVT 772
             +   L  + +  NK +            ++   + S++  L I   +NQ         
Sbjct: 217 VANMTRLNSLKIGNNKITD-----------LSPLANLSQLTWLEIG--TNQI------SD 257

Query: 773 VKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNL 832
           +  ++     +  +   ++  SN       +       L +L +++N L        G L
Sbjct: 258 INAVK----DLTKL-KMLNVGSNQISDISVL--NNLSQLNSLFLNNNQLGNEDMEVIGGL 310

Query: 833 KEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
             + +L LS N+++   P  LASL+ +   + +   +
Sbjct: 311 TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.8 bits (234), Expect = 1e-20
 Identities = 69/457 (15%), Positives = 148/457 (32%), Gaps = 115/457 (25%)

Query: 393 LEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNK 452
              L        NQ+   ++++        L    +   V      EL ++  L ++  K
Sbjct: 2   AATLATLPAPI-NQIFPDADLAE--GIRAVLQKASVTDVVTQE---ELESITKLVVAGEK 55

Query: 453 FSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGS-GNLKFLNLSHNLV 511
            +           I  ++  + L  L+++ NQI+      I  + +   L  L +  N +
Sbjct: 56  VAS----------IQGIEYLTNLEYLNLNGNQITD-----ISPLSNLVKLTNLYIGTNKI 100

Query: 512 VSLQEPYSISGIRFLDLHSNQLRGNIPYMS--PNTSYVDYSNNNFTSIPADIGNFMSETE 569
             +    +++ +R L L+ + +   I  ++       ++   N+  S  + + N      
Sbjct: 101 TDISALQNLTNLRELYLNEDNISD-ISPLANLTKMYSLNLGANHNLSDLSPLSNM----- 154

Query: 570 YFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNN 629
                                 T    L ++ + +    P            + NL    
Sbjct: 155 ----------------------TGLNYLTVTESKVKDVTP------------IANLTD-- 178

Query: 630 LNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRN 689
                          L  L L+ NQ++ +    LA+   L       N I+D  P  + N
Sbjct: 179 ---------------LYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDITP--VAN 219

Query: 690 ASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSG 749
            + L  L + +N  +              L  +++  N+ S            +   K  
Sbjct: 220 MTRLNSLKIGNNKITDLSPLANL----SQLTWLEIGTNQISD-----------INAVKDL 264

Query: 750 SEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFR 809
           +++  L +   SNQ         +  I + L  +  +  S+  ++N         +G   
Sbjct: 265 TKLKMLNVG--SNQ---------ISDISV-LNNLSQL-NSLFLNNNQLGNEDMEVIGGLT 311

Query: 810 SLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS 846
           +L  L +S N +T   P    +L +++S D +   + 
Sbjct: 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.5 bits (184), Expect = 2e-14
 Identities = 52/313 (16%), Positives = 111/313 (35%), Gaps = 50/313 (15%)

Query: 577 NNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSD 636
             S+  V+ +      +   L ++   ++       +T     LE LNL  N +      
Sbjct: 31  KASVTDVVTQEEL--ESITKLVVAGEKVASIQGIEYLTN----LEYLNLNGNQITDISPL 84

Query: 637 TIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVL 696
           +       L  L +  N++  +   +L N   L+ L L  + ISD  P  L N + +  L
Sbjct: 85  SNLVK---LTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSL 137

Query: 697 VLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSG--RLSQKWLLTMMVAETKSGSEVNH 754
            L +N+    +S   N      L  + +  +K      ++    L               
Sbjct: 138 NLGANHNLSDLSPLSNMTG---LNYLTVTESKVKDVTPIANLTDLYS------------- 181

Query: 755 LGIEMPSNQFYEVRVTVTVKGIEI------KLLKVPNIF-----TSIDFSSNNFEGPIPV 803
             + +  NQ  ++    ++  +        ++  +  +       S+   +N      P+
Sbjct: 182 --LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPL 239

Query: 804 EMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLN 863
                  L  L +  N ++    ++  +L +++ L++  N +S  I   L +L+ L+ L 
Sbjct: 240 --ANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS-DISV-LNNLSQLNSLF 293

Query: 864 LSYNNLVGKIPTS 876
           L+ N L  +    
Sbjct: 294 LNNNQLGNEDMEV 306

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.3 bits (168), Expect = 3e-12
 Identities = 45/283 (15%), Positives = 98/283 (34%), Gaps = 66/283 (23%)

Query: 592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLS 651
                  L   +++  +    +      +  L +    +  ++          L+ L+L+
Sbjct: 22  AEGIRAVLQKASVTDVVTQEELES----ITKLVVAGEKVA-SIQG--IEYLTNLEYLNLN 74

Query: 652 GNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPR 711
           GNQ+  + P  L+N   L  L + +N I+D     L+N ++L+ L L  +N S  IS   
Sbjct: 75  GNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNIS-DISPLA 129

Query: 712 NKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTV 771
           N      +  ++L  N     LS                 ++++                
Sbjct: 130 NLTK---MYSLNLGANHNLSDLS----------------PLSNM---------------- 154

Query: 772 TVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGN 831
                   L         +  + +  +   P+       LY+L++++N +    P    +
Sbjct: 155 ------TGL-------NYLTVTESKVKDVTPI--ANLTDLYSLSLNYNQIEDISP--LAS 197

Query: 832 LKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 874
           L  +      +N ++   P  +A++  L+ L +  N +    P
Sbjct: 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 4e-08
 Identities = 40/230 (17%), Positives = 76/230 (33%), Gaps = 45/230 (19%)

Query: 644 GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNF 703
           G   L      +  + P   A+        L+   ++D          S+  LV+     
Sbjct: 1   GAATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 704 SG--HISCPRNKVSWPLLQIVDLACNKFSG--RLSQKWLLTMMVAETKSGSEVNHLGIEM 759
           +    I    N      L+ ++L  N+ +    LS    LT +         +    I  
Sbjct: 57  ASIQGIEYLTN------LEYLNLNGNQITDISPLSNLVKLTNL--------YIGTNKITD 102

Query: 760 PSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHN 819
            S                  L  + N+   +  + +N     P+       +Y+LN+  N
Sbjct: 103 ISA-----------------LQNLTNL-RELYLNEDNISDISPL--ANLTKMYSLNLGAN 142

Query: 820 ALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
               S  S   N+  +  L ++ + +    P  +A+L  L  L+L+YN +
Sbjct: 143 HNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 1e-07
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 788 TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSG 847
             ++ + N      P+       L  L +  N +T    S+  NL  +  L L+ +N+S 
Sbjct: 69  EYLNLNGNQITDISPL--SNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD 124

Query: 848 KIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQS 881
             P  LA+L  +  LNL  N+ +  +   + +  
Sbjct: 125 ISP--LANLTKMYSLNLGANHNLSDLSPLSNMTG 156

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  135 bits (342), Expect = 8e-34
 Identities = 59/464 (12%), Positives = 135/464 (29%), Gaps = 70/464 (15%)

Query: 239 FPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLT 298
             E   +    +   ++ + L Q          ++++L LS   LS      +     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 299 RVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGI 358
            + +SS          + +L+ L  +D ++N+    +  L    ++  L  + NN+S   
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNY----VQELLVGPSIETLHAANNNISRVS 115

Query: 359 SSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVL 418
            S         + + L +N ++            ++ L L  N+ +         SS  L
Sbjct: 116 CSRGQ----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 419 FDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVL 478
             L+L  N +   V   +      L TLDLSSNK + +                  ++ +
Sbjct: 172 EHLNLQYNFIYD-VKGQVV--FAKLKTLDLSSNKLAFM------GPEFQSAAG---VTWI 219

Query: 479 DISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIP 538
            + +N++   +   +    S NL+  +L  N        +    +R     + +++    
Sbjct: 220 SLRNNKLV-LIEKAL--RFSQNLEHFDLRGN-------GFHCGTLRDFFSKNQRVQ---- 265

Query: 539 YMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLD 598
                      +      +        +                                
Sbjct: 266 ---------TVAKQTVKKLTGQNEEECTVPTL-----------------------GHYGA 293

Query: 599 LSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGV 658
               +L       LI        +L+   +       +         + +D    Q + V
Sbjct: 294 YCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR--QREIDALKEQYRTV 351

Query: 659 VPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNN 702
           + +          L+ +   + +      R  + L   + ++  
Sbjct: 352 IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (338), Expect = 2e-33
 Identities = 76/451 (16%), Positives = 148/451 (32%), Gaps = 45/451 (9%)

Query: 436 IFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWE 495
           I           ++ +   +   +        + ++   +  LD+S N +S      +  
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALAS--------LRQSAWNVKELDLSGNPLSQISAADL-- 54

Query: 496 VGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFT 555
                L+ LNLS N++    +  S+S +R LDL++N ++  +  + P+   +  +NNN +
Sbjct: 55  APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-ELL-VGPSIETLHAANNNIS 112

Query: 556 SIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITK 615
            +    G             ANN +  +        +  Q LDL  N +  T+    +  
Sbjct: 113 RVSCSRGQGKKNIY-----LANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAA 166

Query: 616 SSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLR 675
           SS TLE LNL  N +   +   +      L+ LDLS N+L   +     +   +  + LR
Sbjct: 167 SSDTLEHLNLQYNFIY-DVKGQVVFAK--LKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 676 SNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQ 735
           +N +       LR + +L+   LR N F  H    R+  S    ++  +A         Q
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGF--HCGTLRDFFSK-NQRVQTVAKQTVKKLTGQ 278

Query: 736 KWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSN 795
                 +               E     F +            +L+ +     ++     
Sbjct: 279 NEEECTVPTLG----HYGAYCCEDLPAPFAD------------RLIALKRKEHALLSGQG 322

Query: 796 NFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIP---AQ 852
           +    +  E         ++         I       +   +L+     L  ++      
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

Query: 853 LASLNFLSVLNLSYNNLVGKIPTSTQLQSFS 883
            A L+      +    L       + LQ   
Sbjct: 383 HAELDGTLQQAVGQIELQHATEEQSPLQLLR 413

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  123 bits (309), Expect = 1e-29
 Identities = 65/485 (13%), Positives = 136/485 (28%), Gaps = 52/485 (10%)

Query: 200 SLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQL 259
              + ++  +    +         N+K LDLS   L       +     LE L+LS N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 260 LQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLT 319
                 +    S+LR L L++  +       +    ++  +  ++ N +           
Sbjct: 71  Y--ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKK 123

Query: 320 QLFHMDFSSNHFFG-PIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNS 378
            +     ++N               +  LDL  N +     +        L+ + L +N 
Sbjct: 124 NI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 379 LSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFF 438
           +   +   +     L+ L LS+N+     PE  + +   +  + L  N+L   +      
Sbjct: 181 IY-DVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAG--VTWISLRNNKLVL-IE-KALR 234

Query: 439 ELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGS 498
             +NL   DL  N F    L               ++  +     +          E   
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRD-------FFSKNQRVQTVAKQTVKKLTGQN----EEEC 283

Query: 499 GNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIP 558
                 +        L  P+    +  L    + L             +    +    + 
Sbjct: 284 TVPTLGHYGAYCCEDLPAPF-ADRLIALKRKEHAL-------------LSGQGSETERLE 329

Query: 559 ADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSS 618
            +  N   + E     A       VI +   +      L+     L        ++    
Sbjct: 330 CERENQARQRE---IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDE-----QVSNGRR 381

Query: 619 TLEVLNLGRNNLNGTLS-DTIFPGDCGLQILDLSGNQL-QGVVPKSLANCNMLQVLDLRS 676
               L+       G +           LQ+L     +  +  V +     N ++  D+  
Sbjct: 382 AHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQ 441

Query: 677 NYISD 681
           +  + 
Sbjct: 442 HKETQ 446

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (292), Expect = 2e-27
 Identities = 56/417 (13%), Positives = 120/417 (28%), Gaps = 49/417 (11%)

Query: 84  IPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSG--IVPIEYSYTVWIANLS 141
           I     N        ++       + +   S   +  LDLSG  +  I  +         
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA--------- 52

Query: 142 LFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSL 201
             L   T+L  L+L    L  +       L  L  L+ L L+   +       L    S+
Sbjct: 53  -DLAPFTKLELLNLSSNVLYETL-----DLESLSTLRTLDLNNNYVQE-----LLVGPSI 101

Query: 202 SVIRLHYNY--GLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQL 259
             +    N    +S            K + L+   +             ++ LDL +N++
Sbjct: 102 ETLHAANNNISRVSCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 260 LQGSLPNFPKN-SSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANL 318
              +      +  +L  L L +  +   +   +     L  +++SS      + P   + 
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSA 213

Query: 319 TQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNS 378
             +  +   +N       +L  S+NL + DL  N    G    F+ +   +Q   +   +
Sbjct: 214 AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ--TVAKQT 271

Query: 379 LSGSIPRSLFLLPNLEMLQLSNNQFEN----QLPEISNVSSSVLFDLDLSGNRLEGPVPI 434
           +     ++        +        E+        +  +       L   G+  E     
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE-- 329

Query: 435 SIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPN 491
                      +D    ++  +           +   +     L+     +  +V N
Sbjct: 330 CERENQARQREIDALKEQYRTVIDQ--------VTLRKQAKITLEQKKKALDEQVSN 378

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 98.4 bits (245), Expect = 1e-21
 Identities = 54/440 (12%), Positives = 130/440 (29%), Gaps = 54/440 (12%)

Query: 65  DLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLS 124
           +    +   +  +  K     S   +  N+  L+LS    +     +++  T+L  L+LS
Sbjct: 8   NGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 125 G-----IVPIEYSYTVWIANLS----LFLQNLTELTELHLDRVDLSASGTEWCKALSFLP 175
                  + +E   T+   +L+      L     +  LH    ++S        + S   
Sbjct: 67  SNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV------SCSRGQ 120

Query: 176 NLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLS-SGTEFLAHLTNLKALDLSECG 234
             + + L+   ++   +        +  + L  N   + +  E  A    L+ L+L    
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 235 LQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNL 294
           +      +++    L+TLDLS N+L     P F   + +  + L +  L   +  ++   
Sbjct: 181 IY-DVKGQVV-FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 295 ENLTRVEVSSCNF-TGPIPPSMANLTQLFHMDFSSNHFFG-------------------- 333
           +NL   ++    F  G +    +   ++  +   +                         
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 334 ---PIPSLHKSRNLNNLDLSFNNLSGGISSTF---WEQLLNLQIVVLGHNSLSGSIPRSL 387
              P P   +   L   + +  +  G  +       E     + +          I +  
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVT 356

Query: 388 FLLPNLEMLQLSNNQFENQLPEI--SNVSSSVLFDLDLSGNRLEGPV----PISIFFELR 441
                   L+      + Q+     ++          +    L+       P+ +   + 
Sbjct: 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIV 416

Query: 442 NLYTLDLSSNKFSRLKLASS 461
             Y       +  +      
Sbjct: 417 KRYEEMYVEQQSVQNNAIRD 436

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  132 bits (335), Expect = 4e-33
 Identities = 83/426 (19%), Positives = 148/426 (34%), Gaps = 37/426 (8%)

Query: 298 TRVEVSSCNFTG--PIPPSMANLTQLFHMDFSSNHFFG-PIPSLHKSRNLNNLDLSFNNL 354
                 +        +P  +  +      D S N        S  + ++L  L +     
Sbjct: 13  YNAICINRGLHQVPELPAHVNYV------DLSLNSIAELNETSFSRLQDLQFLKVEQQTP 66

Query: 355 SGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQLSNNQF-ENQLPEISN 412
              I +  +  L +L I+ L +N     +    F  L NLE+L L+        L     
Sbjct: 67  GLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125

Query: 413 VSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQ 472
              + L  L L  N ++   P S F  +R  + LDL+ NK   +           +    
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI------CEEDLLNFQG 179

Query: 473 SQLSVLDISDNQISGEVPNWIWEVGSGN------LKFLNLSHNLVVSLQEPYSISGIRFL 526
              ++L +S   +      W+     GN      +  L+LS N             I   
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

Query: 527 DLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPE 586
            + S  L  +            + + NF          +  +       + + +   + +
Sbjct: 240 KIQSLILSNS------YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLK 292

Query: 587 SVCKA-TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGL 645
           SV    T+ + L L+ N ++  I        +  L  LNL +N L G++   +F     L
Sbjct: 293 SVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTH-LLKLNLSQNFL-GSIDSRMFENLDKL 349

Query: 646 QILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSG 705
           ++LDLS N ++ +  +S      L+ L L +N +           +SLQ + L +N +  
Sbjct: 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW-- 407

Query: 706 HISCPR 711
             SCPR
Sbjct: 408 DCSCPR 413

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  105 bits (263), Expect = 6e-24
 Identities = 80/404 (19%), Positives = 142/404 (35%), Gaps = 47/404 (11%)

Query: 69  LQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEI-SSLTRLVTLDLSG-- 125
           +  ++L           +    L +L +L + Q      I       L+ L+ L L    
Sbjct: 32  VNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 126 IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGC 185
            + +E                L  L  L L + +L  +          L +L++L L   
Sbjct: 91  FLQLETG----------AFNGLANLEVLTLTQCNLDGAVLS-GNFFKPLTSLEMLVLRDN 139

Query: 186 DLSGPINHYL-AKSRSLSVIRLHYN----------YGLSSGTEFLAHLTNLKALDLSECG 234
           ++            R   V+ L +N                   L  L+++   D++E  
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 235 LQGKFPEKILHVPTLETLDLSINQL---LQGSLPNFPKNSSLRDLILSHTGLSGTLPDSI 291
           L  +         ++ TLDLS N     +     +    + ++ LILS++   G+     
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS----- 254

Query: 292 GNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFG-PIPSLHKSRNLNNLDLS 350
            +  +    +  +  F G      + +      D S +  F           +L  L L+
Sbjct: 255 -SFGHTNFKDPDNFTFKG---LEASGVKTC---DLSKSKIFALLKSVFSHFTDLEQLTLA 307

Query: 351 FNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQLSNNQFENQLPE 409
            N ++  I    +  L +L  + L  N L  SI   +F  L  LE+L LS N     L +
Sbjct: 308 QNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGD 364

Query: 410 ISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKF 453
            S +    L +L L  N+L+  VP  IF  L +L  + L +N +
Sbjct: 365 QSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.7 bits (228), Expect = 2e-19
 Identities = 72/368 (19%), Positives = 128/368 (34%), Gaps = 44/368 (11%)

Query: 537 IPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVC-KATNFQ 595
           +P +  + +YVD S N+   +     +F    +  +      +   VI  +     ++  
Sbjct: 25  VPELPAHVNYVDLSLNSIAELNE--TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI 82

Query: 596 VLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGT-LSDTIFPGDCGLQILDLSGNQ 654
           +L L  N     +        ++ LEVL L + NL+G  LS   F     L++L L  N 
Sbjct: 83  ILKLDYNQFL-QLETGAFNGLAN-LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 655 LQGVVPKSL-ANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNK 713
           ++ + P S   N     VLDL  N +       L N       +LR ++ +         
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYW 199

Query: 714 VSWPL---------LQIVDLACNKFSGRLSQK--WLLTMMVAETKSGSEVNHLGIEMPSN 762
           + W           +  +DL+ N F   ++++    +     ++   S   ++G      
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259

Query: 763 QFYEVRVTVTVKGIEIKLLKV-----------PNIF------TSIDFSSNNFEGPIPVEM 805
            F +             +               ++F        +  + N       ++ 
Sbjct: 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN---KIDD 316

Query: 806 GRFRSLYA---LNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQL-ASLNFLSV 861
             F  L     LN+S N L       F NL ++E LDLS N++   +  Q    L  L  
Sbjct: 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKE 375

Query: 862 LNLSYNNL 869
           L L  N L
Sbjct: 376 LALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.1 bits (203), Expect = 2e-16
 Identities = 65/367 (17%), Positives = 118/367 (32%), Gaps = 78/367 (21%)

Query: 541 SPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLS 600
           S         N     +P                         +P       +   +DLS
Sbjct: 9   SVIGYNAICINRGLHQVPE------------------------LP------AHVNYVDLS 38

Query: 601 NNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP 660
            N+++  +     ++    L+ L + +      + +  F G   L IL L  NQ   +  
Sbjct: 39  LNSIA-ELNETSFSRLQD-LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET 96

Query: 661 KSLANCNMLQVLDLRSNYISDNF--PCWLRNASSLQVLVLRSNN---------FSG---- 705
            +      L+VL L    +        + +  +SL++LVLR NN         F      
Sbjct: 97  GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156

Query: 706 -HISCPRNKVS-----------WPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVN 753
             +    NKV                 ++ L+       +++ WL           + + 
Sbjct: 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ-DMNEYWLGWEKCGNPFKNTSIT 215

Query: 754 HLGIEMPSNQFYEVRVTVTVKGIEIKLLKVP----NIFTSIDFSSNNFEGPIPVEMGRFR 809
            L  ++  N F E         I    ++      +      F   NF+ P   +   F+
Sbjct: 216 TL--DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP---DNFTFK 270

Query: 810 SLYA-----LNMSHNALTGSIPS-SFGNLKEIESLDLSMNNLSGKIPAQ-LASLNFLSVL 862
            L A      ++S + +  ++    F +  ++E L L+ N ++ KI       L  L  L
Sbjct: 271 GLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328

Query: 863 NLSYNNL 869
           NLS N L
Sbjct: 329 NLSQNFL 335

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.4 bits (183), Expect = 5e-14
 Identities = 70/443 (15%), Positives = 140/443 (31%), Gaps = 81/443 (18%)

Query: 442 NLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNL 501
           ++  +DLS N  + L   S              L  L +        + N  +  G  +L
Sbjct: 31  HVNYVDLSLNSIAELNETS--------FSRLQDLQFLKVEQQTPGLVIRNNTFR-GLSSL 81

Query: 502 KFLNLSHNLVVSLQEP--YSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPA 559
             L L +N  + L+      ++ +  L L    L G                     +  
Sbjct: 82  IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDG-------------------AVLSG 122

Query: 560 DIGNFMSETEYFYFVAANNSLAGVIPESV-CKATNFQVLDLSNNNLSGTIPACLITKSSS 618
           +    ++  E       +N++  + P S       F VLDL+ N +       L+     
Sbjct: 123 NFFKPLTSLEMLVL--RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180

Query: 619 TLEVLNLGRNNLN-------GTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV 671
              +L L    L        G         +  +  LDLSGN  +  + K     + +  
Sbjct: 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF--FDAIAG 238

Query: 672 LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSG 731
             ++S  +S+++                  NF    +     +    ++  DL+ +K   
Sbjct: 239 TKIQSLILSNSY---------NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF- 288

Query: 732 RLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSID 791
            L +              +++  L +    N+  ++               + ++   ++
Sbjct: 289 ALLKSVFSHF--------TDLEQLTLA--QNEINKIDDNA--------FWGLTHL-LKLN 329

Query: 792 FSSNNFEGPIPVEMGRFRSLYAL---NMSHNALTGSIPS-SFGNLKEIESLDLSMNNLSG 847
            S N       ++   F +L  L   ++S+N +  ++   SF  L  ++ L L  N L  
Sbjct: 330 LSQNFLGS---IDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK- 384

Query: 848 KIPAQ-LASLNFLSVLNLSYNNL 869
            +P      L  L  + L  N  
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTNPW 407

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  127 bits (322), Expect = 8e-32
 Identities = 72/383 (18%), Positives = 131/383 (34%), Gaps = 58/383 (15%)

Query: 323 HMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGS 382
           H+D  +   +     +    N   +    + +   + +   +    ++++ L    +   
Sbjct: 27  HIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIE-E 83

Query: 383 IPRSLFL-LPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELR 441
           I    F     ++ L +  N     LP     +  +L  L L  N L   +P  IF    
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTP 141

Query: 442 NLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNL 501
            L TL +S+N   R++            +  + L  L +S N+++    + I      +L
Sbjct: 142 KLTTLSMSNNNLERIEDD--------TFQATTSLQNLQLSSNRLTHVDLSLIP-----SL 188

Query: 502 KFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADI 561
              N+S+NL+ +L  P ++     LD   N +      ++   + +   +NN T     +
Sbjct: 189 FHANVSYNLLSTLAIPIAV---EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL 245

Query: 562 GNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLE 621
                                              +DLS N L   I      K    LE
Sbjct: 246 NY----------------------------PGLVEVDLSYNELE-KIMYHPFVKMQR-LE 275

Query: 622 VLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISD 681
            L +  N L     +        L++LDLS N L   V ++    + L+ L L  N I  
Sbjct: 276 RLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 332

Query: 682 NFPCWLRNASSLQVLVLRSNNFS 704
                L    +L+ L L  N++ 
Sbjct: 333 -LK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  124 bits (312), Expect = 1e-30
 Identities = 67/392 (17%), Positives = 132/392 (33%), Gaps = 39/392 (9%)

Query: 61  TGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEI-SSLTRLV 119
           + L        +++       +     +  L N   +         ++P  +  S  ++ 
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMR-KLPAALLDSFRQVE 72

Query: 120 TLDLSG--IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNL 177
            L+L+   I  I+          +        + +L++    +             +P L
Sbjct: 73  LLNLNDLQIEEID----------TYAFAYAHTIQKLYMGFNAIRYLPPH---VFQNVPLL 119

Query: 178 QVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQG 237
            VL L   DLS         +  L+ + +  N       +     T+L+ L LS   L  
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT- 178

Query: 238 KFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENL 297
                ++  P+L   ++S N L            ++ +L  SH  ++  +   +     L
Sbjct: 179 HVDLSLI--PSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVEL 228

Query: 298 TRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFG-PIPSLHKSRNLNNLDLSFNNLSG 356
           T +++   N T      + N   L  +D S N           K + L  L +S N L  
Sbjct: 229 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286

Query: 357 GISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSS 416
            ++      +  L+++ L HN L   + R+      LE L L +N     +  +   +  
Sbjct: 287 -LNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS----IVTLKLSTHH 339

Query: 417 VLFDLDLSGNRLEGPVPISIFFELRNLYTLDL 448
            L +L LS N  +     ++F  +      D 
Sbjct: 340 TLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  116 bits (293), Expect = 4e-28
 Identities = 66/368 (17%), Positives = 135/368 (36%), Gaps = 60/368 (16%)

Query: 365 QLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLS 424
              ++ I +   +   G        L N +++   N+     LP     S   +  L+L+
Sbjct: 22  VFYDVHIDMQTQDVYFGF---EDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLN 77

Query: 425 GNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQ 484
             ++E  +    F     +  L +  N    L           + +N   L+VL +  N 
Sbjct: 78  DLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPH--------VFQNVPLLTVLVLERND 128

Query: 485 ISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEP--YSISGIRFLDLHSNQLRGNIPYMSP 542
           +S  +P  I+   +  L  L++S+N +  +++    + + ++ L L SN+L      + P
Sbjct: 129 LS-SLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP 186

Query: 543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNN 602
           +  + + S N  +++   I                                 + LD S+N
Sbjct: 187 SLFHANVSYNLLSTLAIPI-------------------------------AVEELDASHN 215

Query: 603 NLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKS 662
           +++  +        +  L +L L  NNL             GL  +DLS N+L+ ++   
Sbjct: 216 SIN-VVRG----PVNVELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNELEKIMYHP 267

Query: 663 LANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIV 722
                 L+ L + +N +      + +   +L+VL L  N+        RN+  +  L+ +
Sbjct: 268 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL---HVERNQPQFDRLENL 323

Query: 723 DLACNKFS 730
            L  N   
Sbjct: 324 YLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  116 bits (293), Expect = 4e-28
 Identities = 72/353 (20%), Positives = 121/353 (34%), Gaps = 43/353 (12%)

Query: 140 LSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSR 199
                  L     +      +          L     +++L+L+   +     +  A + 
Sbjct: 37  FGFEDITLNNQKIVTFKNSTMRKLPAA---LLDSFRQVELLNLNDLQIEEIDTYAFAYAH 93

Query: 200 SLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKIL-HVPTLETLDLSINQ 258
           ++  + + +N           ++  L  L L    L    P  I  + P L TL +S N 
Sbjct: 94  TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN 152

Query: 259 LLQGSLPN--FPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMA 316
           L    + +  F   +SL++L LS   L+  +      + +L    VS    +     ++A
Sbjct: 153 L--ERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLLS-----TLA 202

Query: 317 NLTQLFHMDFSSNHFFGPIPSLHKS--RNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVL 374
               +  +D S N     I  +       L  L L  NNL+    + +      L  V L
Sbjct: 203 IPIAVEELDASHNS----INVVRGPVNVELTILKLQHNNLT---DTAWLLNYPGLVEVDL 255

Query: 375 GHNSLSGSIPRSLFL-LPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVP 433
            +N L   I    F+ +  LE L +SNN+          + +  L  LDLS N L   V 
Sbjct: 256 SYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT--LKVLDLSHNHLLH-VE 311

Query: 434 ISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQIS 486
            +   +   L  L L  N    LKL++              L  L +S N   
Sbjct: 312 RN-QPQFDRLENLYLDHNSIVTLKLSTH-----------HTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  116 bits (292), Expect = 6e-28
 Identities = 61/363 (16%), Positives = 119/363 (32%), Gaps = 38/363 (10%)

Query: 207 HYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPN 266
                       L +      + +        F  + + +   + +    + +    LP 
Sbjct: 5   PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPA 62

Query: 267 --FPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSM-ANLTQLFH 323
                   +  L L+   +      +      + ++ +        +PP +  N+  L  
Sbjct: 63  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTV 121

Query: 324 MDFSSNHFFG-PIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGS 382
           +    N     P    H +  L  L +S NNL   I    ++   +LQ + L  N L+  
Sbjct: 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-H 179

Query: 383 IPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRN 442
           +  SL   P+L    +S N     L          + +LD S N +   V   +      
Sbjct: 180 VDLSLI--PSLFHANVSYNLLST-LAIPIA-----VEELDASHNSINV-VRGPVN---VE 227

Query: 443 LYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLK 502
           L  L L  N  +              L N   L  +D+S N++  ++    +      L+
Sbjct: 228 LTILKLQHNNLTD----------TAWLLNYPGLVEVDLSYNELE-KIMYHPFV-KMQRLE 275

Query: 503 FLNLSHNLVVSLQEP-YSISGIRFLDLHSNQLRGNIPYMSPNTS---YVDYSNNNFTSIP 558
            L +S+N +V+L      I  ++ LDL  N L  ++    P       +   +N+  ++ 
Sbjct: 276 RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK 334

Query: 559 ADI 561
              
Sbjct: 335 LST 337

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 99.3 bits (248), Expect = 3e-22
 Identities = 65/374 (17%), Positives = 134/374 (35%), Gaps = 63/374 (16%)

Query: 500 NLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPA 559
           NL++  + +++ + +Q      G   + L++ +              V + N+    +PA
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQK-------------IVTFKNSTMRKLPA 62

Query: 560 DIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSST 619
            + +   + E       +  +  +   +   A   Q L +  N +   +P  +       
Sbjct: 63  ALLDSFRQVELLNL--NDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPL- 118

Query: 620 LEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYI 679
           L VL L RN+L+ +L   IF     L  L +S N L+ +   +      LQ L L SN +
Sbjct: 119 LTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177

Query: 680 SDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLL 739
           +      + +   L    +  N  S  ++ P        ++ +D + N  +         
Sbjct: 178 THVDLSLIPS---LFHANVSYNLLS-TLAIPIA------VEELDASHNSIN--------- 218

Query: 740 TMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIK----LLKVPNIFTSIDFSSN 795
                              +      E+   + ++   +     LL  P +   +D S N
Sbjct: 219 ------------------VVRGPVNVELT-ILKLQHNNLTDTAWLLNYPGL-VEVDLSYN 258

Query: 796 NFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLAS 855
             E  +     + + L  L +S+N L  ++      +  ++ LDLS N+L   +      
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 316

Query: 856 LNFLSVLNLSYNNL 869
            + L  L L +N++
Sbjct: 317 FDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.5 bits (238), Expect = 6e-21
 Identities = 71/404 (17%), Positives = 138/404 (34%), Gaps = 76/404 (18%)

Query: 472 QSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQE--PYSISGIRFLDLH 529
           Q      D+  +  + +V     ++   N K +   ++ +  L      S   +  L+L+
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77

Query: 530 SNQLRGNIPYMS----PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIP 585
             Q+   I   +         +    N    +P  +   +            N L+ +  
Sbjct: 78  DLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL--ERNDLSSLPR 134

Query: 586 ESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGL 645
                      L +SNNNL   I       ++S L+ L L  N L   +  ++ P    L
Sbjct: 135 GIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTS-LQNLQLSSNRLT-HVDLSLIP---SL 188

Query: 646 QILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSG 705
              ++S N L      +LA    ++ LD   N I+            L +L L+ NN + 
Sbjct: 189 FHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLT- 239

Query: 706 HISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFY 765
             +   N   +P L  VDL+ N+                             ++  + F 
Sbjct: 240 DTAWLLN---YPGLVEVDLSYNELE---------------------------KIMYHPFV 269

Query: 766 EVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSI 825
           +++          +L         +  S+N     + +      +L  L++SHN L   +
Sbjct: 270 KMQ----------RL-------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HV 310

Query: 826 PSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
             +      +E+L L  N++   +   L++ + L  L LS+N+ 
Sbjct: 311 ERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 36/249 (14%), Positives = 73/249 (29%), Gaps = 52/249 (20%)

Query: 636 DTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQV 695
           D+    DC    + +                N  +++  +++ +       L +   +++
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 696 LVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHL 755
           L L        I           +Q + +  N                            
Sbjct: 74  LNLNDLQIE-EID-TYAFAYAHTIQKLYMGFNAIR------------------------- 106

Query: 756 GIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEM-GRFRSLYAL 814
              +P + F  V            L       T +    N+    +P  +      L  L
Sbjct: 107 --YLPPHVFQNVP----------LL-------TVLVLERNDLSS-LPRGIFHNTPKLTTL 146

Query: 815 NMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 874
           +MS+N L      +F     +++L LS N L+  +   L+ +  L   N+SYN L   + 
Sbjct: 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-STLA 202

Query: 875 TSTQLQSFS 883
               ++   
Sbjct: 203 IPIAVEELD 211

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  123 bits (311), Expect = 7e-31
 Identities = 62/337 (18%), Positives = 109/337 (32%), Gaps = 39/337 (11%)

Query: 192 NHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLET 251
           +H+   S     +    +  L    + L+        D +      +      + P +ET
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN--SNNPQIET 62

Query: 252 LDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPI 311
                 +     L +         L L    L    PD    L +L  + + +      +
Sbjct: 63  RTGRALKATADLLEDA-TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-L 119

Query: 312 PPSMANLTQLFHMDFSSNHFFGPIPSLHKS----RNLNNLDLSFNN--------LSGGIS 359
           P +M     L  +  + N     + +L  S      L  L +            L+   +
Sbjct: 120 PDTMQQFAGLETLTLARNP----LRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 360 STFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLF 419
           S   + L+NLQ + L    +  S+P S+  L NL+ L++ N+      P I ++    L 
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK--LE 232

Query: 420 DLDLSG-NRLEGPVPISIFFELRNLYTLDLSS-NKFSRLKLASSKPRAIPILKNQSQLSV 477
           +LDL G   L    P         L  L L   +    L      P  I  L     L  
Sbjct: 233 ELDLRGCTALRN-YPPIFG-GRAPLKRLILKDCSNLLTL------PLDIHRLTQ---LEK 281

Query: 478 LDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSL 514
           LD+        +P+ I ++       + +  +L   L
Sbjct: 282 LDLRGCVNLSRLPSLIAQLP--ANCIILVPPHLQAQL 316

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  112 bits (282), Expect = 4e-27
 Identities = 58/330 (17%), Positives = 112/330 (33%), Gaps = 36/330 (10%)

Query: 143 FLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLS 202
              + +    L+      S +   +   LS          +    +       A S +  
Sbjct: 7   HHHHSSGRENLYFQG---STALRPYHDVLSQWQRHYNADRNRWHSAW----RQANSNNPQ 59

Query: 203 VIRLHYNYGLSSGTEFLAHLT--NLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLL 260
           +        L +  + L   T     AL+L    L  +FP++   +  L+ + +    L 
Sbjct: 60  IETRTGR-ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL- 116

Query: 261 QGSLPNFPKN-SSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMAN-- 317
              LP+  +  + L  L L+   L   LP SI +L  L  + + +C     +P  +A+  
Sbjct: 117 -MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 318 -------LTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQ 370
                  L  L  +            S+   +NL +L +  + LS  +       L  L+
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAI-HHLPKLE 232

Query: 371 IVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQL----PEISNVSSSVLFDLDLSGN 426
            + L   +   + P        L+ L L +    + L     +I  ++   L  LDL G 
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDC---SNLLTLPLDIHRLTQ--LEKLDLRGC 287

Query: 427 RLEGPVPISIFFELRNLYTLDLSSNKFSRL 456
                +P  I  +L     + +  +  ++L
Sbjct: 288 VNLSRLPSLIA-QLPANCIILVPPHLQAQL 316

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (280), Expect = 7e-27
 Identities = 48/351 (13%), Positives = 103/351 (29%), Gaps = 42/351 (11%)

Query: 285 GTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNL 344
           G+      +      +         P    ++   + ++ D +  H      + +   N 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN---NP 58

Query: 345 NNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFE 404
                +   L                 + L    L    P   F L +L+ + +      
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

Query: 405 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSS-NKFSRLKLASSKP 463
                +   +   L  L L+ N L   +P SI   L  L  L + +  + + L    +  
Sbjct: 118 ELPDTMQQFAG--LETLTLARNPLRA-LPASI-ASLNRLRELSIRACPELTELPEPLAST 173

Query: 464 RAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGI 523
            A    +    L  L +    I   +P  I  +   NLK L + ++ + +L    +I  +
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANL--QNLKSLKIRNSPLSAL--GPAIHHL 228

Query: 524 ---RFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSL 580
                LDL                           + P   G   +  +    +   ++L
Sbjct: 229 PKLEELDLR--------------------GCTALRNYPPIFGG-RAPLKRLI-LKDCSNL 266

Query: 581 AGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLN 631
              +P  + + T  + LDL        +P+ +    +    ++ +  +   
Sbjct: 267 L-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA--NCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (277), Expect = 2e-26
 Identities = 55/377 (14%), Positives = 107/377 (28%), Gaps = 82/377 (21%)

Query: 336 PSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEM 395
              H S    NL    +         + + L   Q     H +   +   S +   N   
Sbjct: 6   HHHHHSSGRENLYFQGSTAL----RPYHDVLSQWQR----HYNADRNRWHSAWRQANSNN 57

Query: 396 LQL---SNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNK 452
            Q+   +    +     + + +      L+L    L    P   F  L +L  + + +  
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAF-RLSHLQHMTIDAAG 115

Query: 453 FSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVV 512
              L      P  +        L  L ++ N +   +P  I      +L           
Sbjct: 116 LMEL------PDTMQQFAG---LETLTLARNPLR-ALPASI-----ASLN---------- 150

Query: 513 SLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFY 572
            L+E         L + +                        T +P  + +  +  E+  
Sbjct: 151 RLRE---------LSIRAC--------------------PELTELPEPLASTDASGEHQG 181

Query: 573 FV------AANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLG 626
            V           +   +P S+    N + L + N+ LS  +   +       LE L+L 
Sbjct: 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPK--LEELDLR 237

Query: 627 RNNLNGTLSDTIFPGDC-GLQILDLSG-NQLQGVVPKSLANCNMLQVLDLRSNYISDNFP 684
                         G    L+ L L   + L   +P  +     L+ LDLR        P
Sbjct: 238 GCTALRNYPPIF--GGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLP 294

Query: 685 CWLRNASSLQVLVLRSN 701
             +    +  ++++  +
Sbjct: 295 SLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (265), Expect = 6e-25
 Identities = 56/356 (15%), Positives = 109/356 (30%), Gaps = 61/356 (17%)

Query: 4   SLILSNDSGFPS--TKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENAT 61
           +L     +        LSQW  H ++D   W         +   ++      +    +  
Sbjct: 16  NLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLL 75

Query: 62  GLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTL 121
                    +L L        Q P +   L++L ++ +   G   E+P  +     L TL
Sbjct: 76  EDATQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETL 132

Query: 122 DLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLS 181
            L+                         L  L                +++ L  L+ LS
Sbjct: 133 TLAR----------------------NPLRALP--------------ASIASLNRLRELS 156

Query: 182 LSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPE 241
           +  C                 +  L      +  +     L NL++L L   G++   P 
Sbjct: 157 IRACP---------------ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA 200

Query: 242 KILHVPTLETLDLSINQLLQGSLPNFPKN-SSLRDLILSHTGLSGTLPDSIGNLENLTRV 300
            I ++  L++L +  + L   +L     +   L +L L         P   G    L R+
Sbjct: 201 SIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 301 EVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP-SLHKSRNLNNLDLSFNNLS 355
            +  C+    +P  +  LTQL  +D         +P  + +      + +  +  +
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.8 bits (221), Expect = 3e-19
 Identities = 39/296 (13%), Positives = 88/296 (29%), Gaps = 56/296 (18%)

Query: 418 LFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSV 477
             +L   G+    P    +  + +  Y  D +            +  +     N +   +
Sbjct: 14  RENLYFQGSTALRPYHDVLS-QWQRHYNADRN------------RWHSAWRQANSNNPQI 60

Query: 478 LDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGI---RFLDLHSNQLR 534
              +   +     + + +        L L    +     P     +   + + + +  L 
Sbjct: 61  ETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQF--PDQAFRLSHLQHMTIDAAGL- 116

Query: 535 GNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNF 594
                                 +P  +  F           A N L   +P S+      
Sbjct: 117 --------------------MELPDTMQQFAGLET---LTLARNPLR-ALPASIASLNRL 152

Query: 595 QVLDLSNNNLSGTIPACLITKSSST-------LEVLNLGRNNLNGTLSDTIFPGDC-GLQ 646
           + L +        +P  L +  +S        L+ L L    +  +L  +I   +   L+
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI--ANLQNLK 209

Query: 647 ILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNN 702
            L +  + L  +   ++ +   L+ LDLR      N+P      + L+ L+L+  +
Sbjct: 210 SLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.2 bits (214), Expect = 3e-18
 Identities = 49/376 (13%), Positives = 96/376 (25%), Gaps = 80/376 (21%)

Query: 550 SNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIP 609
            +         +  +            + +           + N Q+   +   L     
Sbjct: 21  GSTALRPYHDVLSQWQRHYNA------DRNRWH-SAWRQANSNNPQIETRTGRALK-ATA 72

Query: 610 ACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCG----LQILDLSGNQLQGVVPKSLAN 665
             L   +      L L    L        FP        LQ + +    L   +P ++  
Sbjct: 73  DLLEDATQPGRVALELRSVPL------PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 666 CNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS-------GHISCPRNKVSWPL 718
              L+ L L  N +    P  + + + L+ L +R+                         
Sbjct: 126 FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 719 LQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEI 778
           LQ + L                                  +P+                I
Sbjct: 185 LQSLRLEWTGIR---------------------------SLPA---------------SI 202

Query: 779 KLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESL 838
             L+  N+  S+   ++     +   +     L  L++       + P  FG    ++ L
Sbjct: 203 ANLQ--NL-KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 839 DLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYEGNKGLYGPP 897
            L   +    +P  +  L  L  L+L     + ++P+   QL +        +       
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL------ 312

Query: 898 LTNESQARPPELPPSP 913
                Q RP   P  P
Sbjct: 313 QAQLDQHRPVARPAEP 328

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.4 bits (173), Expect = 5e-13
 Identities = 48/294 (16%), Positives = 85/294 (28%), Gaps = 64/294 (21%)

Query: 591 ATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDL 650
           ++  + L    +         L     S  +       N   +            QI   
Sbjct: 11  SSGRENLYFQGSTALRPYHDVL-----SQWQRHYNADRNRWHSAWR--QANSNNPQIETR 63

Query: 651 SGNQLQGVVPKSLANCNM--LQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHIS 708
           +G  L+      L +        L+LRS  +   FP      S LQ + + +        
Sbjct: 64  TGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM---E 118

Query: 709 CPRNKVSWPLLQIVDLACNKFS------GRLSQKWLLTMMVAETKSGSEVNHLGIEMPSN 762
            P     +  L+ + LA N           L++   L               L I     
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRALPASIASLNR---LR-------------ELSIRACP- 161

Query: 763 QFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALT 822
                           +L ++P    S D            E     +L +L +    + 
Sbjct: 162 ----------------ELTELPEPLASTD---------ASGEHQGLVNLQSLRLEWTGIR 196

Query: 823 GSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS 876
            S+P+S  NL+ ++SL +  + LS  +   +  L  L  L+L     +   P  
Sbjct: 197 -SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI 248

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.1 bits (149), Expect = 6e-10
 Identities = 29/235 (12%), Positives = 62/235 (26%), Gaps = 34/235 (14%)

Query: 475 LSVLDISDNQISGEVPNWIWEVGSGNLKFL-NLSHNLVVSLQEPYSISGIRFLDLHSNQL 533
              L    +       + +        +   N   N   S     + +  +        L
Sbjct: 14  RENLYFQGSTALRPYHDVL-----SQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRAL 68

Query: 534 RGNIPYM----SPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVC 589
           +     +     P    ++  +      P                     L   +P+++ 
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQH---MTIDAAGLM-ELPDTMQ 124

Query: 590 KATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILD 649
           +    + L L+ N L   +PA + + +   L  L++        L + +           
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNR--LRELSIRACPELTELPEPLA---------- 171

Query: 650 LSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS 704
                              LQ L L    I    P  + N  +L+ L +R++  S
Sbjct: 172 ------STDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS 219

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  125 bits (317), Expect = 1e-30
 Identities = 71/363 (19%), Positives = 134/363 (36%), Gaps = 45/363 (12%)

Query: 370 QIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLE 429
           + V+        ++P  +       +L L  N+ +  L +    S   L +L+L+ N + 
Sbjct: 14  RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVS 69

Query: 430 GPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEV 489
             V    F  L NL TL L SN+   + L         +    S L+ LDIS+N+I   +
Sbjct: 70  A-VEPGAFNNLFNLRTLGLRSNRLKLIPLG--------VFTGLSNLTKLDISENKIV-IL 119

Query: 490 PNWIWEVGSGNLKFLNLSHNLVVSLQEP--YSISGIRFLDLHSNQLRGNIPYMSPNTSYV 547
            +++++    NLK L +  N +V +       ++ +  L L                   
Sbjct: 120 LDYMFQ-DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL------------------- 159

Query: 548 DYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGT 607
                N TSIP +  + +           + ++  +   S  +    +VL++S+     T
Sbjct: 160 --EKCNLTSIPTEALSHLHGLIVLRL--RHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215

Query: 608 IPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN 667
           +    +      L  L++   NL   +          L+ L+LS N +  +    L    
Sbjct: 216 MTPNCL--YGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272

Query: 668 MLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACN 727
            LQ + L    ++   P   R  + L+VL +  N  +  +       S   L+ + L  N
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLE-ESVFHSVGNLETLILDSN 330

Query: 728 KFS 730
             +
Sbjct: 331 PLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  116 bits (293), Expect = 1e-27
 Identities = 67/316 (21%), Positives = 127/316 (40%), Gaps = 20/316 (6%)

Query: 198 SRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSIN 257
                ++ L  N   +   +  A   +L+ L+L+E  +    P    ++  L TL L  N
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 258 QLLQGSLPN--FPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSM 315
           +L    +P   F   S+L  L +S   +   L     +L NL  +EV   +    I    
Sbjct: 91  RL--KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRA 147

Query: 316 -ANLTQLFHMDFSSNHFFG-PIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVV 373
            + L  L  +     +    P  +L     L  L L   N++  I    +++L  L+++ 
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLE 206

Query: 374 LGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVP 433
           + H     ++  +     NL  L +++      +P ++      L  L+LS N +   + 
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPIST-IE 264

Query: 434 ISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWI 493
            S+  EL  L  + L   + + +     +P A    +  + L VL++S NQ++  +   +
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAVV-----EPYA---FRGLNYLRVLNVSGNQLT-TLEESV 315

Query: 494 WEVGSGNLKFLNLSHN 509
           +    GNL+ L L  N
Sbjct: 316 FH-SVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (259), Expect = 3e-23
 Identities = 68/353 (19%), Positives = 123/353 (34%), Gaps = 39/353 (11%)

Query: 524 RFLDLHSNQLRGNIP-YMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAG 582
           R +  H  +    +P  +   T  +D   N   ++  D        E        N ++ 
Sbjct: 14  RAVLCHRKRFV-AVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELEL--NENIVSA 70

Query: 583 VIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGD 642
           V P +     N + L L +N L   IP  + T  S+ L  L++  N +   L D +F   
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSN-LTKLDISENKIV-ILLDYMFQDL 127

Query: 643 CGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNN 702
             L+ L++  N L  +  ++ +  N L+ L L    ++      L +   L VL LR   
Sbjct: 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL- 186

Query: 703 FSGHISCPRNKVSWPL--LQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMP 760
              +I+  R+     L  L++++++   +         L  M      G  +  L I   
Sbjct: 187 ---NINAIRDYSFKRLYRLKVLEISHWPY---------LDTMTPNCLYGLNLTSLSIT-- 232

Query: 761 SNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFR---SLYALNMS 817
                 V            +  +  +   ++ S N       +E         L  + + 
Sbjct: 233 HCNLTAVPYLA--------VRHLVYL-RFLNLSYNPIST---IEGSMLHELLRLQEIQLV 280

Query: 818 HNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 870
              L    P +F  L  +  L++S N L+    +   S+  L  L L  N L 
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (255), Expect = 9e-23
 Identities = 63/330 (19%), Positives = 113/330 (34%), Gaps = 32/330 (9%)

Query: 541 SPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLS 600
           S     V      F ++P  I    +ET         N +  +  +      + + L+L+
Sbjct: 10  SAQDRAVLCHRKRFVAVPEGI---PTETRLLDL--GKNRIKTLNQDEFASFPHLEELELN 64

Query: 601 NNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP 660
            N +S  +         + L  L L  N L   +   +F G   L  LD+S N++  ++ 
Sbjct: 65  ENIVS-AVEPGAFNNLFN-LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLD 121

Query: 661 KSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQ 720
               +   L+ L++  N +           +SL+ L L   N +  I           L 
Sbjct: 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIP-TEALSHLHGLI 179

Query: 721 IVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKL 780
           ++ L     +  +       +   +    S   +L   M  N  Y + +T          
Sbjct: 180 VLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDT-MTPNCLYGLNLT---------- 227

Query: 781 LKVPNIFTSIDFSSNNFEGPIPVEM-GRFRSLYALNMSHNALTGSIPSSFGNLKEIESLD 839
                   S+  +  N    +P         L  LN+S+N ++    S    L  ++ + 
Sbjct: 228 --------SLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278

Query: 840 LSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
           L    L+   P     LN+L VLN+S N L
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (250), Expect = 4e-22
 Identities = 69/342 (20%), Positives = 118/342 (34%), Gaps = 50/342 (14%)

Query: 69  LQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEI-SSLTRLVTLDLSG-- 125
            + L+LG    K         +  +L  L L++   +  +     ++L  L TL L    
Sbjct: 34  TRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR 91

Query: 126 IVPIEYSYTVWIANLSLFLQNLTELTELHLDR---VDLSASGTEWCKALSFLPNLQVLSL 182
           +  I                 L+ LT+L +     V L             L NL+ L +
Sbjct: 92  LKLIP----------LGVFTGLSNLTKLDISENKIVILLDY------MFQDLYNLKSLEV 135

Query: 183 SGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEK 242
              DL    +   +   SL  + L      S  TE L+HL  L  L L    +       
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195

Query: 243 ILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEV 302
              +  L+ L++S    L    PN     +L  L ++H  L+     ++ +L  L  + +
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255

Query: 303 SSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTF 362
           S    +  I  SM                   +  L +      + L    L+      F
Sbjct: 256 SYNPIST-IEGSM----------------LHELLRLQE------IQLVGGQLAVVEPYAF 292

Query: 363 WEQLLNLQIVVLGHNSLSGSIPRSLF-LLPNLEMLQLSNNQF 403
              L  L+++ +  N L+ ++  S+F  + NLE L L +N  
Sbjct: 293 -RGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.9 bits (187), Expect = 2e-14
 Identities = 46/284 (16%), Positives = 86/284 (30%), Gaps = 55/284 (19%)

Query: 595 QVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ 654
           + +          +P  +     +   +L+LG+N +  TL+   F     L+ L+L+ N 
Sbjct: 14  RAVLCHRKRFV-AVPEGI----PTETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENI 67

Query: 655 LQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKV 714
           +  V P +  N   L+ L LRSN +           S+L  L +  N     +       
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILL-DYMFQ 125

Query: 715 SWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVK 774
               L+ +++  N                               +    F  +       
Sbjct: 126 DLYNLKSLEVGDNDLV---------------------------YISHRAFSGLN------ 152

Query: 775 GIEIKLLKVPNIFTSIDFSSNNFEGPIPVEM-GRFRSLYALNMSHNALTGSIPSSFGNLK 833
                L         +     N    IP E       L  L + H  +      SF  L 
Sbjct: 153 ----SL-------EQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 834 EIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTST 877
            ++ L++S       +         L+ L++++ NL   +P   
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 41/241 (17%), Positives = 83/241 (34%), Gaps = 35/241 (14%)

Query: 642 DCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSN 701
               + +     +    VP+ +      ++LDL  N I         +   L+ L L  N
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEGI-PTE-TRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66

Query: 702 NFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSG-SEVNHLGIEMP 760
             S  +  P    +   L+ + L  N+          L ++     +G S +  L  ++ 
Sbjct: 67  IVS-AVE-PGAFNNLFNLRTLGLRSNR----------LKLIPLGVFTGLSNLTKL--DIS 112

Query: 761 SNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYAL---NMS 817
            N+   +   +           + N+  S++   N+      +    F  L +L    + 
Sbjct: 113 ENKIVILLDYM--------FQDLYNL-KSLEVGDNDLVY---ISHRAFSGLNSLEQLTLE 160

Query: 818 HNALTGSIPS-SFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS 876
              LT SIP+ +  +L  +  L L   N++         L  L VL +S+   +  +  +
Sbjct: 161 KCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219

Query: 877 T 877
            
Sbjct: 220 C 220

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  126 bits (317), Expect = 2e-30
 Identities = 89/471 (18%), Positives = 172/471 (36%), Gaps = 25/471 (5%)

Query: 247 PTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCN 306
                L++S N + +    +    S LR LI+SH  +           + L  +++S   
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 307 FTGPIPPSMANLTQLFHMDFSSNHF--FGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWE 364
               I         L H+D S N F              L  L LS  +L          
Sbjct: 81  LVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 365 QLLNLQIVVLGHNSLSGSIPRSLFLLP--NLEMLQLSNNQFENQLPEISNVSSSVLFDLD 422
             ++  ++VLG        P  L      +L ++  +N +F   L       +++    +
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL-SN 196

Query: 423 LSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISD 482
           +     +      +    +      LS+   + ++   +    I  L   + +    IS+
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 483 NQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYS-----ISGIRFLDLHSNQLRG-- 535
            ++ G++    ++    +LK L++   +      P S      S +   +   +  R   
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 536 -NIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGV--IPESVCKAT 592
              P       ++D+SNN  T    +    ++E E        N L  +  I E   +  
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL--QMNQLKELSKIAEMTTQMK 374

Query: 593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG 652
           + Q LD+S N++S        + + S L  LN+  N L  T+   + P    +++LDL  
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKS-LLSLNMSSNILTDTIFRCLPPR---IKVLDLHS 430

Query: 653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNF 703
           N+++  +PK +     LQ L++ SN +           +SLQ + L +N +
Sbjct: 431 NKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  124 bits (312), Expect = 9e-30
 Identities = 90/473 (19%), Positives = 164/473 (34%), Gaps = 33/473 (6%)

Query: 223 TNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPN--FPKNSSLRDLILSH 280
                L++S+  +   +   IL +  L  L +S N++    L    F  N  L  L LSH
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSH 78

Query: 281 TGLSGTLPDSIGNLENLTRVEVSSCNFTG-PIPPSMANLTQLFHMDFSSNHF----FGPI 335
             L   +        NL  +++S   F   PI     N++QL  +  S+ H       PI
Sbjct: 79  NKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 336 PSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEM 395
             L+ S+ L  L                    +L IV   +      +  S+  + NLE+
Sbjct: 136 AHLNISKVLLVL-GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 396 LQLSNNQFENQLPEISNVSSSVLF-----DLDLSGNRLEGPVPISI--FFELRNLYTLDL 448
             +     +N+     ++ + +       +L L+         I I        ++   +
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 449 SSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSH 508
           S+ K            +   LK    LS+  +  +              + N+K   +S 
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLK---ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 509 NLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMS---PNTSYVDYSNNNFTSIPADIGNFM 565
             +V +  P  IS    LD  +N L   +            +    N    +        
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371

Query: 566 SETEYFYFVAANNSLAGVIPESVC-KATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLN 624
                     + NS++    +  C    +   L++S+N L+ TI  CL       ++VL+
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL----PPRIKVLD 427

Query: 625 LGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSN 677
           L  N +  ++   +   +  LQ L+++ NQL+ V          LQ + L +N
Sbjct: 428 LHSNKIK-SIPKQVVKLE-ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  112 bits (281), Expect = 5e-26
 Identities = 88/491 (17%), Positives = 167/491 (34%), Gaps = 59/491 (12%)

Query: 69  LQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVP 128
              LN+           S + +L+ L  L +S         +       L  LDLS    
Sbjct: 23  TTILNISQNYISELW-TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH--- 78

Query: 129 IEYSYTVWIANL--SLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCD 186
                     N    +       L  L L      A     CK    +  L+ L LS   
Sbjct: 79  ----------NKLVKISCHPTVNLKHLDLSFNAFDALPI--CKEFGNMSQLKFLGLSTTH 126

Query: 187 LSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHV 246
           L       +A      V+ +          E    L +     L       K    IL V
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEK--EDPEGLQDFNTESLHIVFPTNKEFHFILDV 184

Query: 247 PTLETLDLSINQL-----------LQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNL- 294
                 +L ++ +               L     N  L +L L++   +      I  L 
Sbjct: 185 SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244

Query: 295 --ENLTRVEVSSCNFTGPIPPSMA-----NLTQLFHMDFSSNHFFGPIPSLHKS-RNLNN 346
               +    +S+    G +          +L  L      S+ F  P   +++   N+N 
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNI 304

Query: 347 LDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQ 406
            + + +     +      ++     +   +N L+ ++  +   L  LE L L  NQ +  
Sbjct: 305 KNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE- 362

Query: 407 LPEISNVSSSV--LFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPR 464
           L +I+ +++ +  L  LD+S N +            ++L +L++SSN      L  +  R
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-----ILTDTIFR 417

Query: 465 AIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPY--SISG 522
            +P      ++ VLD+  N+I   +P  + ++    L+ LN++ N + S+ +     ++ 
Sbjct: 418 CLP-----PRIKVLDLHSNKIK-SIPKQVVKL--EALQELNVASNQLKSVPDGIFDRLTS 469

Query: 523 IRFLDLHSNQL 533
           ++ + LH+N  
Sbjct: 470 LQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (272), Expect = 8e-25
 Identities = 69/397 (17%), Positives = 142/397 (35%), Gaps = 14/397 (3%)

Query: 66  LQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSG 125
              L+ L+L F  F    I    GN++ L +L LS           I+ L     L + G
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 126 IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGC 185
               E      + + +    ++   T      +   +  T     LS +  +   +    
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 186 DLSGPINH-YLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKIL 244
            LS         K  +L++  +   +        L   T +    +S   LQG+   +  
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268

Query: 245 H-----VPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTR 299
                 +  L    +  +         +   S++     + +G           +     
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328

Query: 300 VEVSSCNFTGPIPPSMANLTQLFHMDFSSNHF---FGPIPSLHKSRNLNNLDLSFNNLSG 356
           ++ S+   T  +  +  +LT+L  +    N             + ++L  LD+S N++S 
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388

Query: 357 GISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSS 416
                      +L  + +  N L+ +I R   L P +++L L +N+ +  +P+      +
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRC--LPPRIKVLDLHSNKIK-SIPKQVVKLEA 445

Query: 417 VLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKF 453
            L +L+++ N+L+  VP  IF  L +L  + L +N +
Sbjct: 446 -LQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (265), Expect = 6e-24
 Identities = 89/509 (17%), Positives = 176/509 (34%), Gaps = 52/509 (10%)

Query: 341 SRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQLS 399
           S+    L++S N +S   +S     L  L+I+++ HN +   +  S+F     LE L LS
Sbjct: 20  SQKTTILNISQNYISELWTSDIL-SLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLS 77

Query: 400 NNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLA 459
           +N+    +     V+   L  LDLS N  +       F  +  L  L LS+    +  + 
Sbjct: 78  HNKLVK-ISCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 460 SSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYS 519
                    + + +   VL +           +  +     L+  N     +V       
Sbjct: 134 P--------IAHLNISKVLLVLGE-------TYGEKEDPEGLQDFNTESLHIVFPTNKEF 178

Query: 520 ISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNS 579
                 LD+    +              +  +   + +     N          +    +
Sbjct: 179 HF---ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 580 LAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGR--NNLNGTLSDT 637
               I + V   T      +SN  L G +       S ++L+ L++ +  +++ G     
Sbjct: 236 SFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 638 IFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLV 697
           I+     + I + + +  + V     +  +    LD  +N ++D       + + L+ L+
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 698 LRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGI 757
           L+ N                 LQ +D++ N           ++    +       + L +
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNS----------VSYDEKKGDCSWTKSLLSL 404

Query: 758 EMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMS 817
            M SN       T T+       +KV      +D  SN  +  IP ++ +  +L  LN++
Sbjct: 405 NMSSNIL-----TDTIFRCLPPRIKV------LDLHSNKIKS-IPKQVVKLEALQELNVA 452

Query: 818 HNALTGSIP-SSFGNLKEIESLDLSMNNL 845
            N L  S+P   F  L  ++ + L  N  
Sbjct: 453 SNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 94.9 bits (236), Expect = 3e-20
 Identities = 96/540 (17%), Positives = 162/540 (30%), Gaps = 97/540 (17%)

Query: 343 NLNNLDLSFNNLS---GGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLS 399
           +   +D S N L      +S           I+ +  N +S      +  L  L +L +S
Sbjct: 1   SEFLVDRSKNGLIHVPKDLSQ-------KTTILNISQNYISELWTSDILSLSKLRILIIS 53

Query: 400 NNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLA 459
           +N+ +  L       +  L  LDLS N+L   +         NL  LDLS N F  L + 
Sbjct: 54  HNRIQ-YLDISVFKFNQELEYLDLSHNKLVK-IS---CHPTVNLKHLDLSFNAFDALPIC 108

Query: 460 SSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYS 519
                      N SQL  L +S   +       I        K L +        ++P  
Sbjct: 109 K-------EFGNMSQLKFLGLSTTHLEKSSVLPI--AHLNISKVLLVLGETYGEKEDPEG 159

Query: 520 ISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEY--FYFVAAN 577
           +       LH                    +N  F  I       ++  E      V  +
Sbjct: 160 LQDFNTESLHIVFP----------------TNKEFHFILDVSVKTVANLELSNIKCVLED 203

Query: 578 NSLAGVIPESVCKATNFQVLDLSNNNLSGT---IPACLITKSSSTLEVLNLGRNNLNGTL 634
           N  +  +       TN ++ +L+ NN+  T       L     +T+   ++    L G L
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263

Query: 635 SDTIFPGDC----GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNA 690
               F         L I  +  +             + + + +   +             
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323

Query: 691 SSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGS 750
           S    L   +N  +   +   N      L+ + L  N+                      
Sbjct: 324 SPFLHLDFSNNLLTD--TVFENCGHLTELETLILQMNQLKE------------------- 362

Query: 751 EVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEM-GRFR 809
                 +   +                    ++ ++   +D S N+             +
Sbjct: 363 ------LSKIAEMT----------------TQMKSL-QQLDISQNSVSYDEKKGDCSWTK 399

Query: 810 SLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
           SL +LNMS N LT +I         I+ LDL  N +   IP Q+  L  L  LN++ N L
Sbjct: 400 SLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  126 bits (319), Expect = 2e-30
 Identities = 74/405 (18%), Positives = 137/405 (33%), Gaps = 69/405 (17%)

Query: 368 NLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNR 427
              ++ +G + L+ ++P  L    ++  L + +N   +       + +     L++SGN+
Sbjct: 41  GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPALPPELRT-----LEVSGNQ 92

Query: 428 LEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISG 487
           L   +P+     L  L            L                S L  L I  NQ++ 
Sbjct: 93  LTS-LPVLPP-GLLELSIFSNPLTHLPAL---------------PSGLCKLWIFGNQLT- 134

Query: 488 EVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYV 547
            +P          L+ L++S N + SL  P   S +  L  ++NQL  ++P +      +
Sbjct: 135 SLPVLP-----PGLQELSVSDNQLASL--PALPSELCKLWAYNNQLT-SLPMLPSGLQEL 186

Query: 548 DYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGT 607
             S+N   S+P           Y      NN L   +P      +  + L +S N L+ +
Sbjct: 187 SVSDNQLASLPTLPSELYKLWAY------NNRLT-SLPALP---SGLKELIVSGNRLT-S 235

Query: 608 IPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN 667
           +P        S L+ L +  N L  +L         GL  L +  NQL   +P+SL + +
Sbjct: 236 LPVLP-----SELKELMVSGNRLT-SLPMLP----SGLLSLSVYRNQLT-RLPESLIHLS 284

Query: 668 MLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACN 727
               ++L  N +S+          +                    + +  L         
Sbjct: 285 SETTVNLEGNPLSE-RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD--- 340

Query: 728 KFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVT 772
                    WL+     E       +  G E  ++ F      ++
Sbjct: 341 ---------WLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLS 376

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  125 bits (316), Expect = 5e-30
 Identities = 72/425 (16%), Positives = 134/425 (31%), Gaps = 84/425 (19%)

Query: 270 NSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSN 329
           N+    L +  +GL+ TLPD +    ++T + +   N T  +P     L  L   + S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTS-LPALPPELRTL---EVSGN 91

Query: 330 HFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL 389
                         L+       +L              L  + +  N L+ S+P     
Sbjct: 92  QLTSLPVLPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQLT-SLPVLP-- 140

Query: 390 LPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLS 449
            P L+ L +S+NQ  +     S +       L    N+L      S+      L  L +S
Sbjct: 141 -PGLQELSVSDNQLASLPALPSELCK-----LWAYNNQLT-----SLPMLPSGLQELSVS 189

Query: 450 SNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN 509
            N+ + L      P         S+L  L   +N+++  +P          LK L +S N
Sbjct: 190 DNQLASL------PTLP------SELYKLWAYNNRLT-SLPALP-----SGLKELIVSGN 231

Query: 510 LVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETE 569
            + SL  P   S ++ L +  N+L  ++P +      +    N  T +P  + +      
Sbjct: 232 RLTSL--PVLPSELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLTRLPESLIHL----- 283

Query: 570 YFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNN 629
                                 ++   ++L  N LS       + +    +         
Sbjct: 284 ----------------------SSETTVNLEGNPLS-ERTLQALRE----ITSAPGYSGP 316

Query: 630 LNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRN 689
           +                +   + + L        A  +   +     N  +D F  +L  
Sbjct: 317 IIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDN--ADAFSLFLDR 374

Query: 690 ASSLQ 694
            S  +
Sbjct: 375 LSETE 379

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  125 bits (314), Expect = 1e-29
 Identities = 80/388 (20%), Positives = 130/388 (33%), Gaps = 63/388 (16%)

Query: 220 AHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILS 279
                   L++ E GL    P+ +     + TL +  N L   SLP  P    LR L +S
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT--SLPALPPE--LRTLEVS 89

Query: 280 HTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLH 339
              L+ +LP     L  L+       +    +P   + L +L       N     +P L 
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTH----LPALPSGLCKL---WIFGNQLTS-LPVL- 139

Query: 340 KSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLS 399
               L  L +S N L     ++       L  +   +N L+ S+P        L+ L +S
Sbjct: 140 -PPGLQELSVSDNQL-----ASLPALPSELCKLWAYNNQLT-SLPML---PSGLQELSVS 189

Query: 400 NNQFENQLPE-ISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKL 458
           +NQ    LP   S      L+ L    NRL      S+      L  L +S N+ + L  
Sbjct: 190 DNQLA-SLPTLPSE-----LYKLWAYNNRLT-----SLPALPSGLKELIVSGNRLTSL-- 236

Query: 459 ASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPY 518
               P         S+L  L +S N+++  +P          L  L++  N +  L  P 
Sbjct: 237 ----PVLP------SELKELMVSGNRLT-SLPMLP-----SGLLSLSVYRNQLTRL--PE 278

Query: 519 SISG---IRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVA 575
           S+        ++L  N L           +     +           +   ET     +A
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET-RALHLA 337

Query: 576 ANNSLAGVIPESVCKATNFQVLDLSNNN 603
           A + L          A  + +    +N 
Sbjct: 338 AADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  114 bits (287), Expect = 2e-26
 Identities = 67/338 (19%), Positives = 123/338 (36%), Gaps = 61/338 (18%)

Query: 399 SNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKL 458
            +      + ++    ++    L++  + L   +P  +     ++ TL +  N  + L  
Sbjct: 23  ESRGRAAVVQKMRACLNNGNAVLNVGESGLTT-LPDCLP---AHITTLVIPDNNLTSL-- 76

Query: 459 ASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPY 518
               P   P      +L  L++S NQ++  +P          L  L++  N +  L  P 
Sbjct: 77  ----PALPP------ELRTLEVSGNQLT-SLPVLP-----PGLLELSIFSNPLTHL--PA 118

Query: 519 SISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANN 578
             SG+  L +  NQL  ++P + P    +  S+N   S+PA               A NN
Sbjct: 119 LPSGLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQLASLPALPSELCK------LWAYNN 171

Query: 579 SLAGVIPESVCKATNFQVLDLSNNNLSGTIPACL---------------ITKSSSTLEVL 623
            L   +P      +  Q L +S+N L+ ++P                  +    S L+ L
Sbjct: 172 QLT-SLPMLP---SGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKEL 226

Query: 624 NLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNF 683
            +  N L  +L          L+ L +SGN+L   +P   +    L  L +  N ++   
Sbjct: 227 IVSGNRLT-SLPVLP----SELKELMVSGNRLTS-LPMLPSG---LLSLSVYRNQLTR-L 276

Query: 684 PCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQI 721
           P  L + SS   + L  N  S        +++      
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (280), Expect = 2e-25
 Identities = 67/347 (19%), Positives = 120/347 (34%), Gaps = 58/347 (16%)

Query: 173 FLPNLQVLSLSGCDLSG-PINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLS 231
                 VL++    L+  P          ++ + +  N    + T   A    L+ L++S
Sbjct: 38  LNNGNAVLNVGESGLTTLPDCL----PAHITTLVIPDN----NLTSLPALPPELRTLEVS 89

Query: 232 ECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSI 291
              L    P     +  L      +       LP  P    L  L +    L+ +LP   
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTH-----LPALPSG--LCKLWIFGNQLT-SLPVLP 140

Query: 292 GNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKS-RNLNNLDLS 350
             L+ L+   VS       +P   + L +L      +N     + SL      L  L +S
Sbjct: 141 PGLQELS---VSDNQLAS-LPALPSELCKL---WAYNNQ----LTSLPMLPSGLQELSVS 189

Query: 351 FNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEI 410
            N L     ++       L  +   +N L+ S+P    L   L+ L +S N+  +     
Sbjct: 190 DNQL-----ASLPTLPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLPVLP 240

Query: 411 SNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILK 470
           S      L +L +SGNRL      S+      L +L +  N+ +RL      P ++  L 
Sbjct: 241 SE-----LKELMVSGNRLT-----SLPMLPSGLLSLSVYRNQLTRL------PESLIHLS 284

Query: 471 NQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEP 517
           +    + +++  N +S      + E+ S       +    +     P
Sbjct: 285 S---ETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAP 328

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (265), Expect = 1e-23
 Identities = 70/361 (19%), Positives = 112/361 (31%), Gaps = 60/361 (16%)

Query: 91  LTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTEL 150
                 LN+ + G    +P  +     + TL +               NL+       EL
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDN------------NLTSLPALPPEL 83

Query: 151 TELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNY 210
             L +    L    T        L  L + S     L    +        L  + +  N 
Sbjct: 84  RTLEVSGNQL----TSLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGN- 131

Query: 211 GLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKN 270
                T        L+ L +S+  L    P        L  L    NQL   SLP  P  
Sbjct: 132 ---QLTSLPVLPPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQL--TSLPMLP-- 180

Query: 271 SSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNH 330
           S L++L +S   L+ +LP     L  L      +   T  +P   + L +L     S N 
Sbjct: 181 SGLQELSVSDNQLA-SLPTLPSELYKL---WAYNNRLT-SLPALPSGLKEL---IVSGNR 232

Query: 331 FFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLL 390
               +P L     L  L +S N L+     +       L  + +  N L+  +P SL  L
Sbjct: 233 L-TSLPVLP--SELKELMVSGNRLT-----SLPMLPSGLLSLSVYRNQLT-RLPESLIHL 283

Query: 391 PNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSS 450
            +   + L      N L E +  +   +         +     ++     R    L L++
Sbjct: 284 SSETTVNLEG----NPLSERTLQALREITSAPGYSGPII-RFDMAGASAPRETRALHLAA 338

Query: 451 N 451
            
Sbjct: 339 A 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (257), Expect = 9e-23
 Identities = 67/309 (21%), Positives = 111/309 (35%), Gaps = 68/309 (22%)

Query: 440 LRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSG 499
                 L++  +  + L      P  +P     + ++ L I DN ++  +P         
Sbjct: 39  NNGNAVLNVGESGLTTL------PDCLP-----AHITTLVIPDNNLT-SLPALP-----P 81

Query: 500 NLKFLNLSHNLVVSLQE------------------PYSISGIRFLDLHSNQLRGNIPYMS 541
            L+ L +S N + SL                    P   SG+  L +  NQL  ++P + 
Sbjct: 82  ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPVLP 140

Query: 542 PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSN 601
           P    +  S+N   S+PA               A NN L   +P      +  Q L +S+
Sbjct: 141 PGLQELSVSDNQLASLPALPSELCK------LWAYNNQLT-SLPMLP---SGLQELSVSD 190

Query: 602 NNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPK 661
           N L+ ++P        S L  L    N L  +L         GL+ L +SGN+L   +P 
Sbjct: 191 NQLA-SLPTLP-----SELYKLWAYNNRLT-SLPALP----SGLKELIVSGNRLTS-LPV 238

Query: 662 SLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQI 721
             +    L+ L +  N ++   P      S L  L +  N  +     P + +       
Sbjct: 239 LPSE---LKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT---RLPESLIHLSSETT 288

Query: 722 VDLACNKFS 730
           V+L  N  S
Sbjct: 289 VNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.9 bits (215), Expect = 1e-17
 Identities = 62/342 (18%), Positives = 94/342 (27%), Gaps = 74/342 (21%)

Query: 69  LQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVP 128
           L++L +         +P     L  L+  +         +P   S L +L          
Sbjct: 83  LRTLEVSGNQLT--SLPVLPPGLLELSIFSNPL----THLPALPSGLCKLWIFGNQ---- 132

Query: 129 IEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLS 188
                   + +L +    L EL+        L A              L  L      L 
Sbjct: 133 --------LTSLPVLPPGLQELSVSDNQLASLPAL----------PSELCKLWAYNNQL- 173

Query: 189 GPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPT 248
                                      T      + L+ L +S+  L    P        
Sbjct: 174 ---------------------------TSLPMLPSGLQELSVSDNQLA-SLPTLP---SE 202

Query: 249 LETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFT 308
           L  L    N+L   SLP  P  S L++LI+S   L+ +LP     L+ L    VS    T
Sbjct: 203 LYKLWAYNNRL--TSLPALP--SGLKELIVSGNRLT-SLPVLPSELKELM---VSGNRLT 254

Query: 309 GPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWE--QL 366
             +P   + L  L       N       SL    +   ++L  N LS        E    
Sbjct: 255 S-LPMLPSGLLSL---SVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310

Query: 367 LNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLP 408
                 ++  +    S PR    L       L   +     P
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAP 352

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.9 bits (202), Expect = 5e-16
 Identities = 62/295 (21%), Positives = 100/295 (33%), Gaps = 64/295 (21%)

Query: 575 AANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTL 634
            +    A V     C      VL++  + L+ T+P CL     + +  L +  NNL  +L
Sbjct: 23  ESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCL----PAHITTLVIPDNNLT-SL 76

Query: 635 SDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQ 694
                     L+ L++SGNQL   +P        L +      ++           S L 
Sbjct: 77  PALP----PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP-------SGLC 124

Query: 695 VLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNH 754
            L +  N  +     P        LQ + ++ N+ +   +    L               
Sbjct: 125 KLWIFGNQLTSLPVLPPG------LQELSVSDNQLASLPALPSELC-------------K 165

Query: 755 LGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYAL 814
           L     +NQ                L  +P+    +  S N     +P        L+A 
Sbjct: 166 L--WAYNNQLTS-------------LPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAY 209

Query: 815 NMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
           N   N LT S+P+    LKE   L +S N L+  +P   + L     L +S N L
Sbjct: 210 N---NRLT-SLPALPSGLKE---LIVSGNRLTS-LPVLPSELK---ELMVSGNRL 253

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 80.7 bits (199), Expect = 1e-15
 Identities = 60/413 (14%), Positives = 124/413 (30%), Gaps = 96/413 (23%)

Query: 473 SQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQ 532
           +  +VL++ ++ ++  +P+ +      ++  L +  N + SL  P     +R L++  NQ
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA----HITTLVIPDNNLTSL--PALPPELRTLEVSGNQ 92

Query: 533 LRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKAT 592
           L                     TS+P          E   F      L  +        +
Sbjct: 93  L---------------------TSLPVLPPGL---LELSIFSNPLTHLPALP-------S 121

Query: 593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG 652
               L +  N L+ ++P          L+ L++  N L  +L          L  L    
Sbjct: 122 GLCKLWIFGNQLT-SLPVLP-----PGLQELSVSDNQLA-SLPALP----SELCKLWAYN 170

Query: 653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRN 712
           NQL   +P   +    LQ L +  N ++   P      S L  L   +N  +   + P  
Sbjct: 171 NQLT-SLPMLPSG---LQELSVSDNQLAS-LPTLP---SELYKLWAYNNRLTSLPALPSG 222

Query: 713 KVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLG-IEMPSNQFYEVRVTV 771
                 L+ + ++ N+                 T      + L  + +  N+   + +  
Sbjct: 223 ------LKELIVSGNRL----------------TSLPVLPSELKELMVSGNRLTSLPM-- 258

Query: 772 TVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGN 831
                    L       S+    N     +P  +    S   +N+  N L+     +   
Sbjct: 259 -----LPSGL------LSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALRE 306

Query: 832 LKEIESLDLSMNNLSGKIPA--QLASLNFLSVLNLSYNNLVGKIPTSTQLQSF 882
           +         +        +  +      L+  +       G+   + +   F
Sbjct: 307 ITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 70.3 bits (172), Expect = 2e-12
 Identities = 51/287 (17%), Positives = 91/287 (31%), Gaps = 72/287 (25%)

Query: 600 SNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVV 659
               +   + ACL         VLN+G + L  TL D +      +  L +  N L   +
Sbjct: 26  GRAAVVQKMRACLNNG----NAVLNVGESGLT-TLPDCLPA---HITTLVIPDNNLT-SL 76

Query: 660 PKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLL 719
           P        L+ L++  N ++ + P        L +      +     + P        L
Sbjct: 77  PALPPE---LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP---ALPSG------L 123

Query: 720 QIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHL-GIEMPSNQFYEVRVTVTVKGIEI 778
             + +  N+                 T        L  + +  NQ               
Sbjct: 124 CKLWIFGNQL----------------TSLPVLPPGLQELSVSDNQ--------------- 152

Query: 779 KLLKVPNIF---TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEI 835
            L  +P +      +   +N     +P+       L  L++S N L  S+P+    L   
Sbjct: 153 -LASLPALPSELCKLWAYNNQLTS-LPMLPS---GLQELSVSDNQLA-SLPTLPSEL--- 203

Query: 836 ESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQS 881
             L    N L+  +PA  +    L  L +S N L   +P   ++L+ 
Sbjct: 204 YKLWAYNNRLT-SLPALPSG---LKELIVSGNRL-TSLPVLPSELKE 245

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (315), Expect = 6e-30
 Identities = 82/479 (17%), Positives = 154/479 (32%), Gaps = 90/479 (18%)

Query: 266 NFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMD 325
           N   +    D+ +               L N   V   +      +P +           
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAA----------- 69

Query: 326 FSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPR 385
                       L   R +  L+L+   +   I +  +     +Q + +G N++   +P 
Sbjct: 70  -----------LLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPP 116

Query: 386 SLFL-LPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLY 444
            +F  +P L +L L  N   + LP     ++  L  L +S N LE  +    F    +L 
Sbjct: 117 HVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQ 174

Query: 445 TLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFL 504
            L LSSN+ + + L+         + +   L   ++S N +S  +           ++ L
Sbjct: 175 NLQLSSNRLTHVDLSL--------IPS---LFHANVSYNLLS-TLAI------PIAVEEL 216

Query: 505 NLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTS--YVDYSNNNFTSIPADIG 562
           + SHN +  ++ P     +  L L  N L  +  ++        VD S N    I     
Sbjct: 217 DASHNSINVVRGP-VNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPF 274

Query: 563 NFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEV 622
             M                             + L +SNN L   +      +   TL+V
Sbjct: 275 VKM--------------------------QRLERLYISNNRLV-ALNLYG--QPIPTLKV 305

Query: 623 LNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYIS-D 681
           L+L  N+L   +       D  L+ L L  N +  +   +      L+ L L  N    +
Sbjct: 306 LDLSHNHLL-HVERNQPQFD-RLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDCN 360

Query: 682 NFPCWLRNASSLQVLVLRSN-----NFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQ 735
           +     RN +   V     +          + C  +   +    +  +A      ++ +
Sbjct: 361 SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQR 419

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (284), Expect = 4e-26
 Identities = 73/355 (20%), Positives = 121/355 (34%), Gaps = 47/355 (13%)

Query: 140 LSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSR 199
                  L     +      +          L     +++L+L+   +     +  A + 
Sbjct: 43  FGFEDITLNNQKIVTFKNSTMRKLPAA---LLDSFRQVELLNLNDLQIEEIDTYAFAYAH 99

Query: 200 SLSVIRLHYNY--GLSSGTEFLAHLTNLKALDLSECGLQGKFPEKIL-HVPTLETLDLSI 256
           ++  + + +N    L        ++  L  L L    L    P  I  + P L TL +S 
Sbjct: 100 TIQKLYMGFNAIRYLPPHV--FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSN 156

Query: 257 NQLLQGSLPN--FPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPS 314
           N L    + +  F   +SL++L LS   L+  +      + +L    VS    +     +
Sbjct: 157 NNL--ERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLLS-----T 206

Query: 315 MANLTQLFHMDFSSNHFFGPIPSLHKS--RNLNNLDLSFNNLSGGISSTFWEQLLNLQIV 372
           +A    +  +D S N     I  +       L  L L  NNL+    + +      L  V
Sbjct: 207 LAIPIAVEELDASHNS----INVVRGPVNVELTILKLQHNNLT---DTAWLLNYPGLVEV 259

Query: 373 VLGHNSLSGSIPRSLFL-LPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGP 431
            L +N L   I    F+ +  LE L +SNN+          + +  L  LDLS N L   
Sbjct: 260 DLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT--LKVLDLSHNHLLH- 315

Query: 432 VPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQIS 486
           V  +   +   L  L L  N    LKL+               L  L +S N   
Sbjct: 316 VERN-QPQFDRLENLYLDHNSIVTLKLS-----------THHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  109 bits (273), Expect = 8e-25
 Identities = 68/389 (17%), Positives = 125/389 (32%), Gaps = 59/389 (15%)

Query: 65  DLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEI-SSLTRLVTLDL 123
            L   + +    +  +     + L +   +  LNL+      EI T   +    +  L +
Sbjct: 49  TLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYM 106

Query: 124 SGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLS 183
                          N       +  L                       +P L VL L 
Sbjct: 107 GF-------------N------AIRYLPP----------------HVFQNVPLLTVLVLE 131

Query: 184 GCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKI 243
             DLS         +  L+ + +  N       +     T+L+ L LS   L       +
Sbjct: 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL 190

Query: 244 LHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVS 303
           +  P+L   ++S N      L       ++ +L  SH  ++  +   +     LT +++ 
Sbjct: 191 I--PSLFHANVSYNL-----LSTLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQ 240

Query: 304 SCNFTGPIPPSMANLTQLFHMDFSSNHFFG-PIPSLHKSRNLNNLDLSFNNLSGGISSTF 362
             N T      + N   L  +D S N           K + L  L +S N L   ++   
Sbjct: 241 HNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG 297

Query: 363 WEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLD 422
              +  L+++ L HN L   + R+      LE L L +    N +  +   +   L +L 
Sbjct: 298 Q-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH----NSIVTLKLSTHHTLKNLT 351

Query: 423 LSGNRLEGPVPISIFFELRNLYTLDLSSN 451
           LS N  +     ++F  +      D   +
Sbjct: 352 LSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  101 bits (252), Expect = 4e-22
 Identities = 66/370 (17%), Positives = 134/370 (36%), Gaps = 55/370 (14%)

Query: 500 NLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPA 559
           NL++  + +++ + +Q      G   + L++ +              V + N+    +PA
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQK-------------IVTFKNSTMRKLPA 68

Query: 560 DIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSST 619
            + +   + E       +  +  +   +   A   Q L +  N +   +P  +       
Sbjct: 69  ALLDSFRQVELLNL--NDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPL- 124

Query: 620 LEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYI 679
           L VL L RN+L+ +L   IF     L  L +S N L+ +   +      LQ L L SN +
Sbjct: 125 LTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183

Query: 680 SDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLL 739
           +      + +   L    +  N  S  ++ P        ++ +D + N  +         
Sbjct: 184 THVDLSLIPS---LFHANVSYNLLS-TLAIPIA------VEELDASHNSIN--------- 224

Query: 740 TMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEG 799
                  +    V    +++  N   +             LL  P +   +D S N  E 
Sbjct: 225 -----VVRGPVNVELTILKLQHNNLTDTAW----------LLNYPGL-VEVDLSYNELEK 268

Query: 800 PIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFL 859
            +     + + L  L +S+N L  ++      +  ++ LDLS N+L   +       + L
Sbjct: 269 IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326

Query: 860 SVLNLSYNNL 869
             L L +N++
Sbjct: 327 ENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.5 bits (175), Expect = 7e-13
 Identities = 73/429 (17%), Positives = 137/429 (31%), Gaps = 44/429 (10%)

Query: 65  DLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLS 124
               LQ+L L             L  + +L + N+S         + ++    +  LD S
Sbjct: 169 ATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLL-----STLAIPIAVEELDAS 219

Query: 125 GIVPIEYSYTVWIANL--SLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSL 182
                         N    +      ELT L L   +L+ +       L   P L  + L
Sbjct: 220 H-------------NSINVVRGPVNVELTILKLQHNNLTDTA-----WLLNYPGLVEVDL 261

Query: 183 SGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEK 242
           S  +L   + H   K + L  + +  N  L +   +   +  LK LDLS   L       
Sbjct: 262 SYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERN 319

Query: 243 ILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEV 302
                 LE L L  N ++   L       +L++L LSH         ++    N+ R  V
Sbjct: 320 QPQFDRLENLYLDHNSIVTLKLSTHH---TLKNLTLSHNDWDCNSLRAL--FRNVARPAV 374

Query: 303 SSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTF 362
              +    I   + +   L   +    +    +  +  +  +  +  +    S   +   
Sbjct: 375 DDADQHCKIDYQLEH--GLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINS 432

Query: 363 WEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLD 422
            + L +      G          +       E+ QL+N Q + Q   +  + + +  +L 
Sbjct: 433 VQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQ-QEQLLQGLHAEIDTNLR 491

Query: 423 LSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISD 482
                 +G    S    L  ++T       F   KL  ++ R       Q +   L+  +
Sbjct: 492 RYRLPKDGLARSSD--NLNKVFTHLKERQAF---KLRETQARRTEADAKQKETEDLEQEN 546

Query: 483 NQISGEVPN 491
             +  ++ N
Sbjct: 547 IALEKQLDN 555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 788 TSIDFSSNNFEGPIPVEM-GRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS 846
           T +    N+    +P  +      L  L+MS+N L      +F     +++L LS N L+
Sbjct: 126 TVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184

Query: 847 GKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFS 883
             +   L+ +  L   N+SYN L   +     ++   
Sbjct: 185 -HVD--LSLIPSLFHANVSYNLL-STLAIPIAVEELD 217

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (296), Expect = 5e-29
 Identities = 63/295 (21%), Positives = 114/295 (38%), Gaps = 26/295 (8%)

Query: 436 IFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWE 495
           I           ++ +   +            + ++   +  LD+S N +S      +  
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQAL--------ASLRQSAWNVKELDLSGNPLSQISAADLA- 55

Query: 496 VGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFT 555
                L+ LNLS N++    +  S+S +R LDL++N ++  +    P+   +  +NNN +
Sbjct: 56  -PFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-ELLVG-PSIETLHAANNNIS 112

Query: 556 SIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITK 615
            +    G             ANN +  +        +  Q LDL  N +  T+    +  
Sbjct: 113 RVSCSRGQGKKNIY-----LANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAA 166

Query: 616 SSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLR 675
           SS TLE LNL  N +   +   +      L+ LDLS N+L   +     +   +  + LR
Sbjct: 167 SSDTLEHLNLQYNFIY-DVKGQVVFAK--LKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 676 SNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFS 730
           +N +       LR + +L+   LR N F  H    R+  S    ++  +A     
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGF--HCGTLRDFFSK-NQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  116 bits (292), Expect = 2e-28
 Identities = 53/344 (15%), Positives = 121/344 (35%), Gaps = 42/344 (12%)

Query: 342 RNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNN 401
                  ++ ++L   ++S   +   N++ + L  N LS      L     LE+L LS+N
Sbjct: 10  NRYKIEKVTDSSLKQALASLR-QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 402 QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASS 461
               +  ++ ++S+  L  LDL+ N       +       ++ TL  ++N  SR+     
Sbjct: 69  VLY-ETLDLESLST--LRTLDLNNNY------VQELLVGPSIETLHAANNNISRVSC--- 116

Query: 462 KPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSIS 521
                   +       + +++N+I+              +++L+L  N + ++      +
Sbjct: 117 -----SRGQG---KKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 522 G---IRFLDLHSNQLRGNIPYMSPNTS--YVDYSNNNFTSIPADIGNFMSETEYFYFVAA 576
               +  L+L  N +  ++           +D S+N    +  +  +    T   +    
Sbjct: 167 SSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVT---WISLR 222

Query: 577 NNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSD 636
           NN L  +I +++  + N +  DL  N         L    S    V  + +  +      
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 637 TIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYIS 680
                +C +  L   G      +P         +++ L  ++  
Sbjct: 279 N--EEECTVPTLGHYGAYCCEDLPAPF----ADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  113 bits (286), Expect = 1e-27
 Identities = 59/351 (16%), Positives = 112/351 (31%), Gaps = 53/351 (15%)

Query: 216 TEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRD 275
            E   +    K   +++  L+            ++ LDLS N L Q S  +    + L  
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 276 LILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPI 335
           L LS   L                               + +L+ L  +D ++N+    +
Sbjct: 63  LNLSSNVLYE--------------------------TLDLESLSTLRTLDLNNNY----V 92

Query: 336 PSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEM 395
             L    ++  L  + NN+S    S         + + L +N ++            ++ 
Sbjct: 93  QELLVGPSIETLHAANNNISRVSCSRG----QGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 396 LQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSR 455
           L L  N+ +         SS  L  L+L  N +   V   +      L TLDLSSNK + 
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVV--FAKLKTLDLSSNKLAF 205

Query: 456 LKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQ 515
           +                  ++ + + +N++   +   +    S NL+  +L  N      
Sbjct: 206 M------GPEFQSAAG---VTWISLRNNKLV-LIEKALR--FSQNLEHFDLRGNGFHCGT 253

Query: 516 EPYSISG---IRFLDLHSNQ-LRGNIPYMSPNTSYVDYSNNNFTSIPADIG 562
                S    ++ +   + + L G         +   Y       +PA   
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (262), Expect = 1e-24
 Identities = 55/345 (15%), Positives = 109/345 (31%), Gaps = 74/345 (21%)

Query: 84  IPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLF 143
           I     N        ++       + +   S   +  LDLSG             N    
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-------------N---- 44

Query: 144 LQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSV 203
              L++++                   L+    L++L+LS   L   ++           
Sbjct: 45  --PLSQISA----------------ADLAPFTKLELLNLSSNVLYETLD----------- 75

Query: 204 IRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGS 263
                          L  L+ L+ LDL+   +Q     ++L  P++ETL  + N + + S
Sbjct: 76  ---------------LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVS 115

Query: 264 LPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTG-PIPPSMANLTQLF 322
                     +++ L++  ++       G    +  +++              A+   L 
Sbjct: 116 CSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 323 HMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGS 382
           H++   N  +  +        L  LDLS N L+  +   F +    +  + L +N L   
Sbjct: 173 HLNLQYNFIYD-VKGQVVFAKLKTLDLSSNKLA-FMGPEF-QSAAGVTWISLRNNKLV-L 228

Query: 383 IPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNR 427
           I ++L    NLE   L  N F           +  +  +     +
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 44/328 (13%), Positives = 96/328 (29%), Gaps = 65/328 (19%)

Query: 542 PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSN 601
                   ++++     A +       +      + N L+ +    +   T  ++L+LS+
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDL--SGNPLSQISAADLAPFTKLELLNLSS 67

Query: 602 NNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPK 661
           N L  T+    ++     L  L+L  N +              ++ L  + N +  V   
Sbjct: 68  NVLYETLDLESLST----LRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSCS 117

Query: 662 SLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQI 721
                   + + L +N I+          S +Q L L+ N     ++      S   L+ 
Sbjct: 118 RGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEH 173

Query: 722 VDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLL 781
           ++L  N     +  + +                                        KL 
Sbjct: 174 LNLQYNFIY-DVKGQVVFA--------------------------------------KL- 193

Query: 782 KVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLS 841
                  ++D SSN     +  E      +  +++ +N L   I  +    + +E  DL 
Sbjct: 194 ------KTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245

Query: 842 MNNLSGKIPAQLASLNFLSVLNLSYNNL 869
            N        +        V  ++   +
Sbjct: 246 GNGFHC-GTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 57/286 (19%), Positives = 105/286 (36%), Gaps = 38/286 (13%)

Query: 584 IPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDC 643
           I E       +++  +++++L     A L   + + ++ L+L  N L+  +S        
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWN-VKELDLSGNPLS-QISAADLAPFT 58

Query: 644 GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNF 703
            L++L+LS N L       L + + L+ LDL +NY+ +     L    S++ L   +NN 
Sbjct: 59  KLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNI 111

Query: 704 SGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQ 763
           S  +SC          + + LA NK +  L                S V +L ++   N+
Sbjct: 112 S-RVSCS----RGQGKKNIYLANNKIT-MLRDLDEGCR--------SRVQYLDLK--LNE 155

Query: 764 FYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTG 823
              V                  +   ++   N     +  ++  F  L  L++S N L  
Sbjct: 156 IDTVN-----FAELAASS--DTL-EHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLA- 204

Query: 824 SIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
            +   F +   +  + L  N L   I   L     L   +L  N  
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 55/400 (13%), Positives = 128/400 (32%), Gaps = 116/400 (29%)

Query: 468 ILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEP--YSISGIRF 525
           I +N ++  +  ++D+ +  +    + +  + N+K L+LS N +  +        + +  
Sbjct: 5   IKQNGNRYKIEKVTDSSLK-QALASLRQ-SAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 526 LDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIP 585
           L+L SN L                          D+ +                      
Sbjct: 63  LNLSSNVL---------------------YETL-DLESL--------------------- 79

Query: 586 ESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGL 645
                 +  + LDL+NN +   +          ++E L+   NN++  +S +   G    
Sbjct: 80  ------STLRTLDLNNNYVQ-ELLVG------PSIETLHAANNNIS-RVSCSRGQG---K 122

Query: 646 QILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISD-NFPCWLRNASSLQVLVLRSNNFS 704
           + + L+ N++  +        + +Q LDL+ N I   NF     ++ +L+ L L+ N   
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 705 GHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQF 764
             +     +V +  L+ +DL+ NK +                                  
Sbjct: 183 -DVK---GQVVFAKLKTLDLSSNKLA---------------------------------- 204

Query: 765 YEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALT-G 823
                      +  +      + T I   +N     I   +   ++L   ++  N    G
Sbjct: 205 ----------FMGPEFQSAAGV-TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252

Query: 824 SIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLN 863
           ++   F   + ++++             +  ++  L    
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.8 bits (143), Expect = 3e-09
 Identities = 35/222 (15%), Positives = 76/222 (34%), Gaps = 42/222 (18%)

Query: 665 NCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS----GHISCPRNKVSWPLLQ 720
           N N  ++  +  + +        ++A +++ L L  N  S      ++          L+
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK------LE 61

Query: 721 IVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKL 780
           +++L+ N                 + +S S +  L +   +N               ++ 
Sbjct: 62  LLNLSSNVLY-----------ETLDLESLSTLRTLDLN--NNY--------------VQE 94

Query: 781 LKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDL 840
           L V     ++  ++NN      V   R +    + +++N +T       G    ++ LDL
Sbjct: 95  LLVGPSIETLHAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 841 SMNNLSG-KIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQS 881
            +N +         AS + L  LNL YN +   +        
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAK 192

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 66  LQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSG 125
              +Q L+L               +   L +LNL       ++  ++    +L TLDLS 
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSS 200

Query: 126 IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGC 185
                      +A +    Q+   +T + L    L        KAL F  NL+   L G 
Sbjct: 201 NK---------LAFMGPEFQSAAGVTWISLRNNKL----VLIEKALRFSQNLEHFDLRGN 247

Query: 186 DLS-GPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSEC 233
               G +  + +K++ +  +       L+   E    +  L       C
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 9/46 (19%), Positives = 19/46 (41%)

Query: 824 SIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
           +I     N    +   ++ ++L   + +   S   +  L+LS N L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL 46

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  115 bits (290), Expect = 6e-27
 Identities = 63/355 (17%), Positives = 114/355 (32%), Gaps = 64/355 (18%)

Query: 389 LLPNLEMLQLSNNQFENQLPEISNVSSSVLFDL---DLSGNRLEGPVPISIFFELRNLYT 445
           +LP      LS N F N +        S         L G      V +     +     
Sbjct: 4   MLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSE 63

Query: 446 LDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLN 505
           L L+    S L      P  +P      Q++VL+I+ N +   +P         +L++L+
Sbjct: 64  LQLNRLNLSSL------PDNLP-----PQITVLEITQNALI-SLPELP-----ASLEYLD 106

Query: 506 LSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFM 565
              N + +L  P   + ++ LD+ +NQL   +P +     Y++  NN  T +P       
Sbjct: 107 ACDNRLSTL--PELPASLKHLDVDNNQLT-MLPELPALLEYINADNNQLTMLPELP---- 159

Query: 566 SETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNL 625
                                     T+ +VL + NN L+  +P         +LE L++
Sbjct: 160 --------------------------TSLEVLSVRNNQLT-FLPELP-----ESLEALDV 187

Query: 626 GRNNLNGTLSDTIFPGDC---GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDN 682
             N L  +L                     N++   +P+++ + +    + L  N +S  
Sbjct: 188 STNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245

Query: 683 FPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKW 737
               L   ++          FS                +           +SQ W
Sbjct: 246 IRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIW 300

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.3 bits (177), Expect = 4e-13
 Identities = 53/341 (15%), Positives = 100/341 (29%), Gaps = 55/341 (16%)

Query: 83  QIPSRL--GNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANL 140
           +  S L    +   + L L++   +  +P  +    ++  L+++               L
Sbjct: 48  EAVSLLKECLINQFSELQLNRLNLS-SLPDNL--PPQITVLEITQN------------AL 92

Query: 141 SLFLQNLTELTELHLDRVDLSASGTEWCKAL-SFLPNLQVLSLSGCDLSGPINHYLAKS- 198
               +    L  L      LS         L     +L+ L +    L+      L +  
Sbjct: 93  ISLPELPASLEYLDACDNRLST--------LPELPASLKHLDVDNNQLT-----MLPELP 139

Query: 199 RSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQ 258
             L  I    N      T      T+L+ L +    L    PE      +LE LD+S N 
Sbjct: 140 ALLEYINADNN----QLTMLPELPTSLEVLSVRNNQLT-FLPELP---ESLEALDVSTNL 191

Query: 259 LLQGSLPNFPKN-----SSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPP 313
           L   SLP  P        +          ++  +P++I +L+    + +     +  I  
Sbjct: 192 L--ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 314 SMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDL--SFNNLSGGISSTFWEQLLNLQI 371
           S++  T          +F       +         +   F        S  W    + + 
Sbjct: 249 SLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEE- 307

Query: 372 VVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISN 412
                N+ S +    L    +         Q    L ++S 
Sbjct: 308 ---HANTFS-AFLDRLSDTVSARNTSGFREQVAAWLEKLSA 344

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.0 bits (171), Expect = 2e-12
 Identities = 60/321 (18%), Positives = 110/321 (34%), Gaps = 63/321 (19%)

Query: 556 SIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSN---NNLSGTIPACL 612
           SI   I N  S ++     +  N+++G   +       ++   L     N     +  CL
Sbjct: 2   SIMLPINNNFSLSQ----NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL 57

Query: 613 ITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL 672
           I +       L L R NL+ +L D + P    + +L+++ N L   +P+  A+   L+ L
Sbjct: 58  INQ----FSELQLNRLNLS-SLPDNLPPQ---ITVLEITQNALI-SLPELPAS---LEYL 105

Query: 673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGR 732
           D   N +S   P    +   L+ L + +N  +     P       LL+ ++   N+ +  
Sbjct: 106 DACDNRLST-LPELPAS---LKHLDVDNNQLT---MLPE---LPALLEYINADNNQLTML 155

Query: 733 LSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDF 792
                 L ++          N L   +P                  + L+       +D 
Sbjct: 156 PELPTSLEVLSVRN------NQLT-FLPE---------------LPESLEA------LDV 187

Query: 793 SSNNFEGPIPVEMGRFRSL----YALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGK 848
           S+N  E  +P    R               N +T  IP +  +L    ++ L  N LS +
Sbjct: 188 STNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245

Query: 849 IPAQLASLNFLSVLNLSYNNL 869
           I   L+        +      
Sbjct: 246 IRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.5 bits (162), Expect = 2e-11
 Identities = 57/321 (17%), Positives = 96/321 (29%), Gaps = 59/321 (18%)

Query: 597 LDLSNNNLSGTIPACLITKSSS--TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ 654
            +   N +S    A   +         +    RN     L + +         L L+   
Sbjct: 15  QNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ---FSELQLNRLN 70

Query: 655 LQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKV 714
           L   +P +L     + VL++  N +    P      +SL+ L    N  S   + P    
Sbjct: 71  LS-SLPDNL--PPQITVLEITQNALIS-LPELP---ASLEYLDACDNRLS---TLPE--- 117

Query: 715 SWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHL-GIEMPSNQFYEVRVTVTV 773
               L+ +D+  N+                 T        L  I   +NQ          
Sbjct: 118 LPASLKHLDVDNNQL----------------TMLPELPALLEYINADNNQLTM------- 154

Query: 774 KGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLK 833
                 L ++P     +   +N     +P       SL AL++S N L  S+P+      
Sbjct: 155 ------LPELPTSLEVLSVRNNQLTF-LPELPE---SLEALDVSTNLLE-SLPAVPVRNH 203

Query: 834 EIES----LDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEG 889
             E          N ++  IP  + SL+    + L  N L  +I  S   Q+  P  +  
Sbjct: 204 HSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGP 262

Query: 890 NKGLYGPPLTNESQARPPELP 910
                       +  RP    
Sbjct: 263 RIYFSMSDGQQNTLHRPLADA 283

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  113 bits (285), Expect = 3e-26
 Identities = 86/471 (18%), Positives = 161/471 (34%), Gaps = 27/471 (5%)

Query: 247 PTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSI-GNLENLTRVEVSSC 305
           P  + L LS N + +  +P+    S LR L LSH  +  +L   +    ++L  ++VS  
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 306 NFTGPIPPSMANLTQLFHMDFSSNHF--FGPIPSLHKSRNLNNLDLSFNNLSGGISSTFW 363
                I      +  L H+D S N F              L  L LS             
Sbjct: 111 RLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 364 EQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDL 423
              L+  ++ L    + G    SL +  N  +L L  +   +      N+S + L  L L
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHP-NSLFSVQVNMSVNALGHLQL 225

Query: 424 SGNRLEG-PVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISD 482
           S  +L        + F         L +     ++        +        +  L+I +
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 483 NQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYS-----ISGIRFLDLHSNQLRGN- 536
             I+  +    +      LK L + H                 + +    L  +      
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 537 --IPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNF 594
              P    + ++++++ N FT          +       +   N L     +      N 
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVF--QGCSTLKRLQTLILQRNGLK-NFFKVALMTKNM 402

Query: 595 QVLDLSNNNLSG--TIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG 652
             L+  + +L+   +         + ++ VLNL  N L G++   + P    +++LDL  
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK---VKVLDLHN 459

Query: 653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNF 703
           N++   +PK + +   LQ L++ SN +           +SLQ + L  N +
Sbjct: 460 NRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  104 bits (262), Expect = 2e-23
 Identities = 94/506 (18%), Positives = 170/506 (33%), Gaps = 54/506 (10%)

Query: 343 NLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQLSNN 401
               L LS N++S  +       L  L+++ L HN +  S+   +FL   +LE L +S+N
Sbjct: 53  RTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 402 QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASS 461
           +    L  IS    + L  LDLS N  +       F  L  L  L LS+ KF +L L   
Sbjct: 111 R----LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL-- 164

Query: 462 KPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSIS 521
                P+        +LD+    I G     +    +  L  L    N + S+Q   S++
Sbjct: 165 -----PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH-LVFHPNSLFSVQVNMSVN 218

Query: 522 GIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLA 581
            +  L L + +L                      ++         +     F        
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR-- 276

Query: 582 GVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNG--TLSDTIF 639
                        + L++ N  ++  I     T S + L+ L +            + ++
Sbjct: 277 -----------PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325

Query: 640 PGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLR 699
                + I  LS +    +      + +    L+   N  +D+          LQ L+L+
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385

Query: 700 SNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEM 759
            N             +   L+ +D++ N           L     +       + L + +
Sbjct: 386 RNGLKNFFKVALMTKNMSSLETLDVSLNS----------LNSHAYDRTCAWAESILVLNL 435

Query: 760 PSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHN 819
            SN             +   L   P +   +D  +N     IP ++   ++L  LN++ N
Sbjct: 436 SSNMLT--------GSVFRCL--PPKV-KVLDLHNNRIMS-IPKDVTHLQALQELNVASN 483

Query: 820 ALTGSIP-SSFGNLKEIESLDLSMNN 844
            L  S+P   F  L  ++ + L  N 
Sbjct: 484 QLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.1 bits (226), Expect = 4e-19
 Identities = 83/471 (17%), Positives = 154/471 (32%), Gaps = 56/471 (11%)

Query: 85  PSRLGNLTNLTYLNLSQGGFAGEIPTEI-SSLTRLVTLDLSGIVPIEYSYTVWIANL--S 141
              +  L+ L  L LS       +   +      L  LD+S              N   +
Sbjct: 69  MPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSH-------------NRLQN 114

Query: 142 LFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDL-SGPINHYLAKSRS 200
           +    +  L  L L   D        CK    L  L  L LS        +        S
Sbjct: 115 ISCCPMASLRHLDLSFNDFDVLPV--CKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLS 172

Query: 201 LSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLL 260
             ++ L   + +  G      + N   L L          +  + V  L  L LS  +L 
Sbjct: 173 CILLDLVSYH-IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231

Query: 261 QGSLPNFP-------KNSSLRDLILSHTGLSGTLPDSIGNL---ENLTRVEVSSCNFTGP 310
             +            +  +L ++ L H   +      +        +  + + +   T  
Sbjct: 232 DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291

Query: 311 IPPSMAN-----LTQLFHMDFSSNHFFGPIPSLHKS-RNLNNLDLSFNNLSGGISSTFWE 364
           I           L  L      +  F     +L+     +N   LS ++    I      
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPP 350

Query: 365 QLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSS--VLFDLD 422
              +   +    N  + S+ +    L  L+ L L  N  +N   +++ ++ +   L  LD
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLD 409

Query: 423 LSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISD 482
           +S N L             ++  L+LSSN      L  S  R +P      ++ VLD+ +
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSN-----MLTGSVFRCLP-----PKVKVLDLHN 459

Query: 483 NQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPY--SISGIRFLDLHSN 531
           N+I   +P  +       L+ LN++ N + S+ +     ++ ++++ LH N
Sbjct: 460 NRIM-SIPKDV--THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 90.3 bits (224), Expect = 8e-19
 Identities = 70/396 (17%), Positives = 143/396 (36%), Gaps = 14/396 (3%)

Query: 66  LQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSL-TRLVTLDLS 124
           +  L+ L+L F  F    +    GNLT LT+L LS   F       ++ L    + LDL 
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179

Query: 125 GIVPIEYSYTVWIA----NLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVL 180
                              L L     +  +      V+           L+     +++
Sbjct: 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM 239

Query: 181 SLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFP 240
           +       GP    +      +  +             + +L N+  L ++E   + +F 
Sbjct: 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL-NIYNLTITERIDREEFT 298

Query: 241 EKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRV 300
                + +L    +     L      +   + +   +LS +           +  + T +
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358

Query: 301 EVSSCNFTGPIPPSMANLTQLFHMDFSSNHF---FGPIPSLHKSRNLNNLDLSFNNLSGG 357
             +   FT  +    + L +L  +    N     F          +L  LD+S N+L+  
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418

Query: 358 ISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSV 417
                     ++ ++ L  N L+GS+ R   L P +++L L NN+  +   +++++ +  
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLTGSVFRC--LPPKVKVLDLHNNRIMSIPKDVTHLQA-- 474

Query: 418 LFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKF 453
           L +L+++ N+L+  VP  +F  L +L  + L  N +
Sbjct: 475 LQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 75.3 bits (185), Expect = 4e-14
 Identities = 62/385 (16%), Positives = 135/385 (35%), Gaps = 32/385 (8%)

Query: 510 LVVSLQEPYSISGIRFLDLHSNQLR---GNIPYMSPNTSYVDYSNNNFTSIPADIGNFMS 566
           L+V    P+S      +D  +  L     ++P   P T  +  S N+ + +     +   
Sbjct: 20  LIVGSMTPFSNELESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRM--PDISF 74

Query: 567 ETEYFYFVAANNSLAGVIPESVCKA-TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNL 625
            +E      ++N +   +   V     + + LD+S+N L   I  C +      L  L+L
Sbjct: 75  LSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMAS----LRHLDL 128

Query: 626 GRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV-LDLRSNYISDNFP 684
             N+ +       F     L  L LS  + + +    +A+ ++  + LDL S +I     
Sbjct: 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGET 188

Query: 685 C--WLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMM 742
               + N + L ++   ++ FS  ++   N +    L  + L           + L+T +
Sbjct: 189 ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC------QRLMTFL 242

Query: 743 VAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIP 802
              T+  + +N     + +     V++        ++ L       ++  +         
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN----IYNLTITERIDREEFT 298

Query: 803 VEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVL 862
                 +SL   ++ +     S  + +    E+    LS+++          S +  + L
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358

Query: 863 NLSYNNLV----GKIPTSTQLQSFS 883
           N + N           T  +LQ+  
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLI 383

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (264), Expect = 5e-25
 Identities = 65/264 (24%), Positives = 99/264 (37%), Gaps = 19/264 (7%)

Query: 250 ETLDLSINQLLQGSLP-NFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFT 308
             +  +   L   S+P   P  SS   L L    L          L  LT++ +SS   +
Sbjct: 10  TEIRCNSKGLT--SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 309 GPIPPSMA--NLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQL 366
                S +    T L ++D S N       +      L +LD   +NL      + +  L
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 367 LNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSG 425
            NL  + + H          +F  L +LE+L+++ N F+             L  LDLS 
Sbjct: 126 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 426 NRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQI 485
            +LE  +  + F  L +L  L++S N F  L             K  + L VLD S N I
Sbjct: 185 CQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFP--------YKCLNSLQVLDYSLNHI 235

Query: 486 SGEVPNWIWEVGSGNLKFLNLSHN 509
                    +    +L FLNL+ N
Sbjct: 236 M-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 64/284 (22%), Positives = 105/284 (36%), Gaps = 59/284 (20%)

Query: 421 LDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDI 480
           +  +   L   VP  I     +   L+L SNK   L                +QL+ L +
Sbjct: 12  IRCNSKGLTS-VPTGIP---SSATRLELESNKLQSLPHGV--------FDKLTQLTKLSL 59

Query: 481 SDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYM 540
           S N +S +      + G+ +LK+L+LS N V+++          FL L    L       
Sbjct: 60  SSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-------NFLGLEQ--LE------ 104

Query: 541 SPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLS 600
                ++D+ ++N   +  +   F+S                          N   LD+S
Sbjct: 105 -----HLDFQHSNLKQMS-EFSVFLS------------------------LRNLIYLDIS 134

Query: 601 NNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP 660
           + +        +    SS LEVL +  N+        IF     L  LDLS  QL+ + P
Sbjct: 135 HTHTR-VAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192

Query: 661 KSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS 704
            +  + + LQVL++  N          +  +SLQVL    N+  
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.8 bits (205), Expect = 3e-17
 Identities = 53/218 (24%), Positives = 83/218 (38%), Gaps = 10/218 (4%)

Query: 170 ALSFLPNLQVLSLSGCDLS--GPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKA 227
               L  L  LSLS   LS  G  +     + SL  + L +N G+ + +     L  L+ 
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH 105

Query: 228 LDLSECGLQGKFPEKIL-HVPTLETLDLSINQLLQGSLPN--FPKNSSLRDLILSH-TGL 283
           LD     L+      +   +  L  LD+S          N  F   SSL  L ++  +  
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 284 SGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFG-PIPSLHKSR 342
              LPD    L NLT +++S C      P +  +L+ L  ++ S N+FF           
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223

Query: 343 NLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLS 380
           +L  LD S N++             +L  + L  N  +
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 8/167 (4%)

Query: 543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNN 602
           + + +  ++   TS+P  I    S          +N L  +      K T    L LS+N
Sbjct: 8   SGTEIRCNSKGLTSVPTGIP---SSATRLEL--ESNKLQSLPHGVFDKLTQLTKLSLSSN 62

Query: 603 NLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKS 662
            LS           +++L+ L+L  N +  T+S   F G   L+ LD   + L+ +   S
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 663 L-ANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHIS 708
           +  +   L  LD+   +    F       SSL+VL +  N+F  +  
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 43/215 (20%), Positives = 82/215 (38%), Gaps = 20/215 (9%)

Query: 524 RFLDLHSNQLR---GNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSL 580
             +  +S  L      IP    + + ++  +N   S+P  + + +++        ++N L
Sbjct: 10  TEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSL--SSNGL 64

Query: 581 A--GVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTI 638
           +  G   +S    T+ + LDLS N +  T+ +         LE L+   +NL      ++
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF--LGLEQLEHLDFQHSNLKQMSEFSV 121

Query: 639 FPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNF-PCWLRNASSLQVLV 697
           F     L  LD+S    +          + L+VL +  N   +NF P       +L  L 
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 698 LRSNNFSGHISCPRNKVSWPL--LQIVDLACNKFS 730
           L        +          L  LQ+++++ N F 
Sbjct: 182 LSQC----QLEQLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.1 bits (180), Expect = 5e-14
 Identities = 53/238 (22%), Positives = 80/238 (33%), Gaps = 23/238 (9%)

Query: 69  LQSLNLGFTLFKGFQIPSR-LGNLTNLTYLNLS--QGGFAGEIPTEISSLTRLVTLDLSG 125
              L L     +   +P      LT LT L+LS     F G         T L  LDLS 
Sbjct: 30  ATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 126 IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGC 185
                      +  +S     L +L  L     +L             L NL  L +S  
Sbjct: 88  N---------GVITMSSNFLGLEQLEHLDFQHSNLKQMSEF--SVFLSLRNLIYLDISHT 136

Query: 186 DLSGPINHYLAKSRSLSVIRLHYNYGLSS-GTEFLAHLTNLKALDLSECGLQGKFPEKIL 244
                 N       SL V+++  N    +   +    L NL  LDLS+C L+ +      
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAF 195

Query: 245 H-VPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS----GTLPDSIGNLENL 297
           + + +L+ L++S N         +   +SL+ L  S   +       L     +L  L
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 44/229 (19%), Positives = 82/229 (35%), Gaps = 25/229 (10%)

Query: 644 GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPC--WLRNASSLQVLVLRSN 701
               L+L  N+LQ +          L  L L SN +S    C       +SL+ L L  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 702 NFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPS 761
                 +   N +    L+ +D   +           L++          + +L I    
Sbjct: 89  GVI---TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL--------RNLIYLDIS--H 135

Query: 762 NQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEM-GRFRSLYALNMSHNA 820
                    +           + ++   +  + N+F+     ++    R+L  L++S   
Sbjct: 136 THTRVAFNGI--------FNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 821 LTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
           L    P++F +L  ++ L++S NN           LN L VL+ S N++
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 46/218 (21%), Positives = 74/218 (33%), Gaps = 32/218 (14%)

Query: 66  LQYLQSLNLGFTLFKGFQIPSR-LGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLS 124
           L  L  L+L           S+     T+L YL+LS  G    + +    L +L  LD  
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 109

Query: 125 GIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCK--------------- 169
               ++      ++  S+F  +L  L  L +       +                     
Sbjct: 110 H-SNLKQ-----MSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162

Query: 170 -------ALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHL 222
                    + L NL  L LS C L            SL V+ + +N   S  T     L
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 223 TNLKALDLSECGLQGKFPEKILHVPT-LETLDLSINQL 259
            +L+ LD S   +     +++ H P+ L  L+L+ N  
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 38/236 (16%), Positives = 68/236 (28%), Gaps = 62/236 (26%)

Query: 642 DCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSN 701
            C    +  +   L  V     ++      L+L SN +           + L  L L SN
Sbjct: 6   SCSGTEIRCNSKGLTSVPTGIPSS---ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN 62

Query: 702 NFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPS 761
             S    C ++      L+ +DL+ N                                  
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFN---------------------------------- 88

Query: 762 NQFYEVRVTVTVKGIEIKLLKVPNIF------TSIDFSSNNFEGPIPVEM-GRFRSLYAL 814
                             ++ + + F        +DF  +N +      +    R+L  L
Sbjct: 89  -----------------GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131

Query: 815 NMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSYNNL 869
           ++SH     +    F  L  +E L ++ N+            L  L+ L+LS   L
Sbjct: 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 779 KLLKVP-NIFTSI---DFSSNNFEGPIPVEMGRFRSLYALNMSHNALT--GSIPSSFGNL 832
            L  VP  I +S    +  SN  +        +   L  L++S N L+  G    S    
Sbjct: 18  GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 833 KEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTST 877
             ++ LDLS N +   + +    L  L  L+  ++NL      S 
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 2/91 (2%)

Query: 788 TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSS-FGNLKEIESLDLSMNNLS 846
             +D S N     +         L  L+  H+ L      S F +L+ +  LD+S  +  
Sbjct: 81  KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139

Query: 847 GKIPAQLASLNFLSVLNLSYNNLVGKIPTST 877
                    L+ L VL ++ N+         
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (256), Expect = 1e-23
 Identities = 67/319 (21%), Positives = 124/319 (38%), Gaps = 31/319 (9%)

Query: 224 NLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGL 283
           +L+ +  S+ GL+   P++I   P    LDL  N + +    +F     L  L+L +  +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 284 SGTLPDSIGNLENLTRVEVSSCNFTGPIPPSM-ANLTQLFHMDFSSNHFFG-PIPSLHKS 341
           S     +   L  L ++ +S  +    IPP++ ++L +L       N     P       
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLPSSLVEL---RIHDNRIRKVPKGVFSGL 146

Query: 342 RNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNN 401
           RN+N +++  N L            L L  + +    L+  IP+ L     L  L L +N
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHN 203

Query: 402 QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASS 461
           + +  +     +  S L+ L L  N++   +       L  L  L L +NK SR+     
Sbjct: 204 KIQA-IELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLSRV----- 256

Query: 462 KPRAIPILKNQSQLSVLDISDNQIS----GEVPNWIWEVGSGNLKFLNLSHNLVVSLQ-E 516
            P  +P LK    L V+ +  N I+     +     + V       ++L +N V   + +
Sbjct: 257 -PAGLPDLKL---LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

Query: 517 PYSISG---IRFLDLHSNQ 532
           P +         +   + +
Sbjct: 313 PATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (252), Expect = 3e-23
 Identities = 71/326 (21%), Positives = 123/326 (37%), Gaps = 59/326 (18%)

Query: 341 SRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQLS 399
           S +   LDL  N++S  +    ++ L +L  +VL +N +S  I    F  L  L+ L +S
Sbjct: 53  SPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYIS 110

Query: 400 NNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLA 459
                N L EI     S L +L +  NR+   VP  +F  LRN+  +++  N    L+ +
Sbjct: 111 K----NHLVEIPPNLPSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGN---PLENS 162

Query: 460 SSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPY- 518
             +P A   LK    L+ L IS+ +++  +P  + E     L  L+L HN + +++    
Sbjct: 163 GFEPGAFDGLK----LNYLRISEAKLT-GIPKDLPE----TLNELHLDHNKIQAIELEDL 213

Query: 519 -SISGIRFLDLHSNQLRGNIPYMS----PNTSYVDYSNNNFTSIPADIGNFMSETEYFYF 573
              S +  L L  NQ+R  I   S    P    +   NN  + +PA + +          
Sbjct: 214 LRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDL--------- 263

Query: 574 VAANNSLAGVIPESVCKATNFQVLDLSNNNLS----GTIPACLITKSSSTLEVLNLGRNN 629
                                QV+ L  NN++                +    ++L  N 
Sbjct: 264 ------------------KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305

Query: 630 L-NGTLSDTIFPGDCGLQILDLSGNQ 654
           +    +    F        +     +
Sbjct: 306 VPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.3 bits (235), Expect = 5e-21
 Identities = 65/345 (18%), Positives = 116/345 (33%), Gaps = 59/345 (17%)

Query: 368 NLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNR 427
           +L++V      L  ++P+ +   P+  +L L NN     L +        L+ L L  N+
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNK 89

Query: 428 LEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISG 487
           +   +    F  LR L  L +S N    +      P  +P     S L  L I DN+I  
Sbjct: 90  ISK-IHEKAFSPLRKLQKLYISKNHLVEI------PPNLP-----SSLVELRIHDNRIR- 136

Query: 488 EVPNWIWEVGSGNLKFLNLSHN-LVVSLQEPYSISG--IRFLDLHSNQLRGNIPYMSPNT 544
           +VP  ++  G  N+  + +  N L  S  EP +  G  + +L +   +L G    +    
Sbjct: 137 KVPKGVFS-GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETL 195

Query: 545 SYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNL 604
           + +   +N   +I                      L           +    L L +N +
Sbjct: 196 NELHLDHNKIQAIEL------------------EDLLRY--------SKLYRLGLGHNQI 229

Query: 605 SGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLA 664
              I    ++   + L  L+L  N L  +      P    LQ++ L  N +  V      
Sbjct: 230 R-MIENGSLSFLPT-LRELHLDNNKL--SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285

Query: 665 NCNM------LQVLDLRSNYISDNF--PCWLRNASSLQVLVLRSN 701
                        + L +N +      P   R  +    +   + 
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.8 bits (205), Expect = 4e-17
 Identities = 65/351 (18%), Positives = 111/351 (31%), Gaps = 78/351 (22%)

Query: 381 GSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFEL 440
            S   +   +P+L+ L  + +      P   +    V+     S   L+  VP  I    
Sbjct: 4   ASGAETTSGIPDLDSLPPTYSA---MCPFGCHCHLRVV---QCSDLGLKA-VPKEIS--- 53

Query: 441 RNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGN 500
            +   LDL +N  S L+            K    L  L + +N+IS ++    +      
Sbjct: 54  PDTTLLDLQNNDISELRKDD--------FKGLQHLYALVLVNNKIS-KIHEKAFS-PLRK 103

Query: 501 LKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPAD 560
           L+ L +S N +V +  P   S +  L +H N++                       +P  
Sbjct: 104 LQKLYISKNHLVEIP-PNLPSSLVELRIHDNRI---------------------RKVPK- 140

Query: 561 IGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNL-SGTIPACLITKSSST 619
                               +G+         N   +++  N L +              
Sbjct: 141 -----------------GVFSGL--------RNMNCIEMGGNPLENSGFEP--GAFDGLK 173

Query: 620 LEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYI 679
           L  L +    L   +   +      L  L L  N++Q +  + L   + L  L L  N I
Sbjct: 174 LNYLRISEAKLT-GIPKDLPET---LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229

Query: 680 SDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFS 730
                  L    +L+ L L +N  S     P       LLQ+V L  N  +
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLS---RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.1 bits (198), Expect = 3e-16
 Identities = 55/328 (16%), Positives = 97/328 (29%), Gaps = 86/328 (26%)

Query: 543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNN 602
           +   V  S+    ++P +I                               +  +LDL NN
Sbjct: 34  HLRVVQCSDLGLKAVPKEIS-----------------------------PDTTLLDLQNN 64

Query: 603 NLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKS 662
           ++S  +           L  L L  N ++  + +  F     LQ L +S N L  + P  
Sbjct: 65  DIS-ELRKDDFKGLQH-LYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNL 121

Query: 663 LANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIV 722
            ++   L  L +  N I            ++  + +  N    +            L  +
Sbjct: 122 PSS---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE-NSGFEPGAFDGLKLNYL 177

Query: 723 DLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLK 782
            ++  K +                            +P +                    
Sbjct: 178 RISEAKLT---------------------------GIPKDLP------------------ 192

Query: 783 VPNIFTSIDFSSNNFEGPIPVEM-GRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLS 841
              +   +    N  +  I +E   R+  LY L + HN +      S   L  +  L L 
Sbjct: 193 -ETL-NELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249

Query: 842 MNNLSGKIPAQLASLNFLSVLNLSYNNL 869
            N LS ++PA L  L  L V+ L  NN+
Sbjct: 250 NNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.2 bits (175), Expect = 3e-13
 Identities = 59/346 (17%), Positives = 100/346 (28%), Gaps = 82/346 (23%)

Query: 69  LQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVP 128
              L+L        +       L +L  L L     +       S L +L  L +S    
Sbjct: 56  TTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK--- 111

Query: 129 IEYSYTVWIANLSLFLQNL-TELTELHLDR---VDLSASGTEWCKALSFLPNLQVLSLSG 184
                     +L     NL + L EL +       +           S L N+  + + G
Sbjct: 112 ---------NHLVEIPPNLPSSLVELRIHDNRIRKVPKG------VFSGLRNMNCIEMGG 156

Query: 185 CDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKIL 244
             L                     N G   G      L  L  L +SE  L    P+ + 
Sbjct: 157 NPLE--------------------NSGFEPGA--FDGL-KLNYLRISEAKLT-GIPKDLP 192

Query: 245 HVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSS 304
              TL  L L  N++    L +  + S L  L L H  +      S+  L  L  + + +
Sbjct: 193 --ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

Query: 305 CNFTGPIPPSMANLTQLFHMDFSSNHF-------FGPIPSLHKSRNLNNLDLSFNNLSGG 357
              +  +P  + +L  L  +   +N+        F P+    K    N + L  N +   
Sbjct: 251 NKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP-- 307

Query: 358 ISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQLSNNQ 402
                                    +  + F  + +   +Q  N +
Sbjct: 308 ----------------------YWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.9 bits (156), Expect = 7e-11
 Identities = 61/356 (17%), Positives = 113/356 (31%), Gaps = 70/356 (19%)

Query: 500 NLKFLNLSHNLVVSLQE-PYSIS-GIRFLDLHSNQLRGNIPYMS----PNTSYVDYSNNN 553
           +L+ +  S      L+  P  IS     LDL +N +   +         +   +   NN 
Sbjct: 34  HLRVVQCSDL---GLKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89

Query: 554 FTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLI 613
            + I     + + + +  Y   + N L   IP ++    +   L + +N +   +P  + 
Sbjct: 90  ISKIHEKAFSPLRKLQKLYI--SKNHLV-EIPPNLPS--SLVELRIHDNRIR-KVPKGVF 143

Query: 614 TKSSSTLEVLNLGRNNL-NGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL 672
           +   + +  + +G N L N       F G   L  L +S  +L G+          L  L
Sbjct: 144 SGLRN-MNCIEMGGNPLENSGFEPGAFDG-LKLNYLRISEAKLTGIPKDLPET---LNEL 198

Query: 673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPL--LQIVDLACNKFS 730
            L  N I       L   S L  L L  N     I    N     L  L+ + L  NK  
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQ----IRMIENGSLSFLPTLRELHLDNNK-- 252

Query: 731 GRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSI 790
                   L+ + A       +  + +   +N   +V                 N F  +
Sbjct: 253 --------LSRVPAGLPDLKLLQVVYLH--TNNITKVG---------------VNDFCPV 287

Query: 791 DFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSI--PSSFGNLKEIESLDLSMNN 844
            F                     +++ +N +      P++F  + +  ++    N 
Sbjct: 288 GFGVKR------------AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG-NY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 43/224 (19%), Positives = 71/224 (31%), Gaps = 40/224 (17%)

Query: 62  GLF-DLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVT 120
           G+F  L+ +  + +G    +         +   L YL +S+      IP ++     L  
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNE 197

Query: 121 LDLSG--IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQ 178
           L L    I  IE             L   ++L  L L    +         +LSFLP L+
Sbjct: 198 LHLDHNKIQAIELED----------LLRYSKLYRLGLGHNQIRMIENG---SLSFLPTLR 244

Query: 179 VLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGK 238
            L L    LS  +   L   + L V+ LH N           ++T +   D    G   K
Sbjct: 245 ELHLDNNKLSR-VPAGLPDLKLLQVVYLHTN-----------NITKVGVNDFCPVGFGVK 292

Query: 239 FPEKILHVPTLETLDLSINQLLQGSLPN--FPKNSSLRDLILSH 280
                        + L  N +    +    F   +    +   +
Sbjct: 293 RAY-------YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 779 KLLKVP-NIFTSI---DFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKE 834
            L  VP  I       D  +N+       +    + LYAL + +N ++     +F  L++
Sbjct: 44  GLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103

Query: 835 IESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTST 877
           ++ L +S N+L  +IP  L   + L  L +  N +  K+P   
Sbjct: 104 LQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGV 142

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (255), Expect = 2e-23
 Identities = 65/347 (18%), Positives = 117/347 (33%), Gaps = 62/347 (17%)

Query: 368 NLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNR 427
           +L++V      L   +P+ L   P+  +L L NN+    + +    +   L  L L  N+
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNK 87

Query: 428 LEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISG 487
           +   +    F  L  L  L LS N+   L      P  +P       L  L + +N+I+ 
Sbjct: 88  ISK-ISPGAFAPLVKLERLYLSKNQLKEL------PEKMP-----KTLQELRVHENEIT- 134

Query: 488 EVPNWIWEVGSGNLKFLNLSHNLVVSLQ-EPYSISG---IRFLDLHSNQLRGNIPYMSP- 542
           +V   ++  G   +  + L  N + S   E  +  G   + ++ +    +   IP   P 
Sbjct: 135 KVRKSVFN-GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP 192

Query: 543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNN 602
           + + +    N  T + A                   SL G+         N   L LS N
Sbjct: 193 SLTELHLDGNKITKVDA------------------ASLKGL--------NNLAKLGLSFN 226

Query: 603 NLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGV---- 658
           ++S  +    +  +   L  L+L  N L              +Q++ L  N +  +    
Sbjct: 227 SIS-AVDNGSLANTPH-LRELHLNNNKL--VKVPGGLADHKYIQVVYLHNNNISAIGSND 282

Query: 659 --VPKSLANCNMLQVLDLRSNYISDNF--PCWLRNASSLQVLVLRSN 701
              P           + L SN +      P   R       + L + 
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  101 bits (253), Expect = 2e-23
 Identities = 59/291 (20%), Positives = 113/291 (38%), Gaps = 25/291 (8%)

Query: 175 PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECG 234
           P+  +L L    ++   +      ++L  + L  N          A L  L+ L LS+  
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 235 LQGKFPEKILHVPTLETLDLSINQLLQGSLP--NFPKNSSLRDLILSHTGLSGTL--PDS 290
           L+ + PEK+    TL+ L +  N++    +    F   + +  + L    L  +     +
Sbjct: 112 LK-ELPEKMP--KTLQELRVHENEI--TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166

Query: 291 IGNLENLTRVEVSSCNFTGPIPPSM-ANLTQLFHMDFSSNHFFGPIP--SLHKSRNLNNL 347
              ++ L+ + ++  N T  IP  +  +LT+L       N     +   SL    NL  L
Sbjct: 167 FQGMKKLSYIRIADTNITT-IPQGLPPSLTEL---HLDGNKI-TKVDAASLKGLNNLAKL 221

Query: 348 DLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFEN-- 405
            LSFN++S  + +       +L+ + L +N L   +P  L     ++++ L NN      
Sbjct: 222 GLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 279

Query: 406 ---QLPEISNVSSSVLFDLDLSGNRLE-GPVPISIFFELRNLYTLDLSSNK 452
                P   N   +    + L  N ++   +  S F  +     + L + K
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.0 bits (242), Expect = 7e-22
 Identities = 50/299 (16%), Positives = 101/299 (33%), Gaps = 49/299 (16%)

Query: 219 LAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQL--LQGSLPNFPKNSSLRDL 276
             +L NL  L L    +    P     +  LE L LS NQL  L   +P      +L++L
Sbjct: 72  FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-----KTLQEL 126

Query: 277 ILSHTGLSGTLPDSIGNLENLTRVEVSSCNFT-GPIPPSM-ANLTQLFHMDFSSNHFFGP 334
            +    ++         L  +  VE+ +       I       + +L ++  +  +    
Sbjct: 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN---- 182

Query: 335 IPSLHKS--RNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LP 391
           I ++ +    +L  L L  N ++  + +   + L NL  + L  NS+S ++        P
Sbjct: 183 ITTIPQGLPPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTP 240

Query: 392 NLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSN 451
           +L  L L+NN+       +  V                         + + +  + L +N
Sbjct: 241 HLRELHLNNNK-------LVKVPGG--------------------LADHKYIQVVYLHNN 273

Query: 452 KFSRLKLASSKPRAIPILKNQSQLSVLDISDNQIS-GEVPNWIWEVGSGNLKFLNLSHN 509
             S +      P        ++  S + +  N +   E+    +         + L + 
Sbjct: 274 NISAIGSNDFCPPG--YNTKKASYSGVSLFSNPVQYWEIQPSTFR-CVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 94.7 bits (236), Expect = 5e-21
 Identities = 69/316 (21%), Positives = 109/316 (34%), Gaps = 55/316 (17%)

Query: 421 LDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDI 480
           +  S   LE  VP  +     +   LDL +NK + +K            KN   L  L +
Sbjct: 36  VQCSDLGLEK-VPKDLP---PDTALLDLQNNKITEIKDGD--------FKNLKNLHTLIL 83

Query: 481 SDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYM 540
            +N+IS ++    +      L+ L LS N +  L E      ++ L +H N++   +   
Sbjct: 84  INNKIS-KISPGAFA-PLVKLERLYLSKNQLKELPEK-MPKTLQELRVHENEIT-KVRKS 139

Query: 541 S----PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQV 596
                     V+   N   S   + G F                                
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQG------------------------MKKLSY 175

Query: 597 LDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQ 656
           + +++ N++ TIP  L      +L  L+L  N +   +      G   L  L LS N + 
Sbjct: 176 IRIADTNIT-TIPQGLP----PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS 229

Query: 657 GVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS----GHISCPRN 712
            V   SLAN   L+ L L +N +    P  L +   +QV+ L +NN S         P  
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288

Query: 713 KVSWPLLQIVDLACNK 728
                    V L  N 
Sbjct: 289 NTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.4 bits (212), Expect = 6e-18
 Identities = 52/322 (16%), Positives = 105/322 (32%), Gaps = 59/322 (18%)

Query: 69  LQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEI-SSLTRLVTLDLSGIV 127
              L+L        +      NL NL  L L     + +I     + L +L  L LS   
Sbjct: 54  TALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN- 110

Query: 128 PIEYSYTVWIANLSLFLQNL-TELTELHLDR---VDLSASGTEWCKALSFLPNLQVLSLS 183
                       L    + +   L EL +       +  S        + L  + V+ L 
Sbjct: 111 -----------QLKELPEKMPKTLQELRVHENEITKVRKS------VFNGLNQMIVVELG 153

Query: 184 GCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKI 243
              L                     + G+ +G      +  L  + +++  +    P+ +
Sbjct: 154 TNPLK--------------------SSGIENGA--FQGMKKLSYIRIADTNIT-TIPQGL 190

Query: 244 LHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVS 303
              P+L  L L  N++ +    +    ++L  L LS   +S     S+ N  +L  + ++
Sbjct: 191 P--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 304 SCNFTGPIPPSMANLTQLFHMDFSSNHF-------FGPIPSLHKSRNLNNLDLSFNNLS- 355
           +      +P  +A+   +  +   +N+        F P     K  + + + L  N +  
Sbjct: 249 NNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 356 GGISSTFWEQLLNLQIVVLGHN 377
             I  + +  +     V LG+ 
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.8 bits (187), Expect = 9e-15
 Identities = 56/328 (17%), Positives = 96/328 (29%), Gaps = 85/328 (25%)

Query: 543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNN 602
           +   V  S+     +P D+     +T        NN +  +         N   L L NN
Sbjct: 32  HLRVVQCSDLGLEKVPKDLP---PDTALLDL--QNNKITEIKDGDFKNLKNLHTLILINN 86

Query: 603 NLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKS 662
            +S  I           LE L L +N L   L + +      LQ L +  N++  V    
Sbjct: 87  KIS-KISPGAFAPLVK-LERLYLSKNQLK-ELPEKMPKT---LQELRVHENEITKVRKSV 140

Query: 663 LANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIV 722
               N + V+      +  N          L+   + +  F G             L  +
Sbjct: 141 FNGLNQMIVV-----ELGTN---------PLKSSGIENGAFQGMKK----------LSYI 176

Query: 723 DLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLK 782
            +A    +                            +P                      
Sbjct: 177 RIADTNIT---------------------------TIPQGLP------------------ 191

Query: 783 VPNIFTSIDFSSNNFEGPIPVEM-GRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLS 841
            P++ T +    N     +         +L  L +S N+++     S  N   +  L L+
Sbjct: 192 -PSL-TELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 842 MNNLSGKIPAQLASLNFLSVLNLSYNNL 869
            N L  K+P  LA   ++ V+ L  NN+
Sbjct: 249 NNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 788 TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSG 847
             +D  +N        +    ++L+ L + +N ++   P +F  L ++E L LS N L  
Sbjct: 55  ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113

Query: 848 KIPAQLASLNFLSVLNLSYNNLVGKIPTST 877
           ++P ++     L  L +  N +  K+  S 
Sbjct: 114 ELPEKM--PKTLQELRVHENEIT-KVRKSV 140

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 788 TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNL-S 846
             +  S N  +  +P +M   ++L  L +  N +T    S F  L ++  ++L  N L S
Sbjct: 103 ERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159

Query: 847 GKIPAQ-LASLNFLSVLNLSYNNLVGKIPTST 877
             I       +  LS + ++  N+   IP   
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGL 190

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 98.6 bits (246), Expect = 9e-22
 Identities = 61/400 (15%), Positives = 134/400 (33%), Gaps = 46/400 (11%)

Query: 175 PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECG 234
            N      +  ++         +  +L+ +  H +  ++  T     LT L  L  +   
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNS-SITDMTGI-EKLTGLTKLICTSNN 75

Query: 235 LQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNL 294
           +       +     L  L    N+L   +L      + L  L      L+      +   
Sbjct: 76  ITTL---DLSQNTNLTYLACDSNKL--TNLD-VTPLTKLTYLNCDTNKLT---KLDVSQN 126

Query: 295 ENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNL 354
             LT +  +    T      +++ TQL  +D   N        +     L  LD SFN +
Sbjct: 127 PLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFNKI 182

Query: 355 SGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVS 414
           +    S    Q   L  +    N+++  +   L     L  L  S+N+      +++ ++
Sbjct: 183 TELDVS----QNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE--IDVTPLT 233

Query: 415 SSVLFDLDLSGNRLEGPVPISIFFELRNLY-------TLDLSSN-KFSRLKLASSKPRAI 466
              L   D S N L   + +S   +L  L+        +DL+ N +    +    +    
Sbjct: 234 Q--LTYFDCSVNPLT-ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKE 290

Query: 467 PILKNQSQLSVLDISDNQISG-EVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRF 525
             + + +QL +LD     I+  ++           L +L L++  +  L +    + ++ 
Sbjct: 291 LDVTHNTQLYLLDCQAAGITELDLSQNP------KLVYLYLNNTELTEL-DVSHNTKLKS 343

Query: 526 LDLHSNQLRGNIPYMSPNTS--YVDYSNNNFTSIPADIGN 563
           L   +  ++ +   +    +      +     ++P +   
Sbjct: 344 LSCVNAHIQ-DFSSVGKIPALNNNFEAEGQTITMPKETLT 382

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 98.2 bits (245), Expect = 1e-21
 Identities = 73/446 (16%), Positives = 144/446 (32%), Gaps = 63/446 (14%)

Query: 65  DLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLS 124
            L  L SL+            + +  LT LT L  +       +   +S  T L  L   
Sbjct: 40  QLATLTSLDCHN---SSITDMTGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACD 93

Query: 125 GIVPIEYSYTVWIANL--SLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSL 182
                         N   +L +  LT+LT L+ D   L+         +S  P L  L+ 
Sbjct: 94  S-------------NKLTNLDVTPLTKLTYLNCDTNKLTKLD------VSQNPLLTYLNC 134

Query: 183 SGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEK 242
           +   L+      ++ +  L+ +  H N  ++     +   T L  LD S   +       
Sbjct: 135 ARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LD 186

Query: 243 ILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEV 302
           +     L  L+   N +   +  +  +N  L  L  S   L+  +   +  L  LT  + 
Sbjct: 187 VSQNKLLNRLNCDTNNI---TKLDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDC 240

Query: 303 SSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTF 362
           S    T     +++ LT L             +  +  + N   +          I    
Sbjct: 241 SVNPLTELDVSTLSKLTTL---HCIQTD----LLEIDLTHNTQLIYFQAEGCR-KIKELD 292

Query: 363 WEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLD 422
                 L ++      ++  +   L   P L  L L+N +    L  +S+ +   L  L 
Sbjct: 293 VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTE-LD-VSHNTK--LKSLS 345

Query: 423 LSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISD 482
                ++     S   ++  L     +  +   +   +    ++ I  +     +LD   
Sbjct: 346 CVNAHIQD---FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS---PDLLDQFG 399

Query: 483 NQIS-GEVPNWIWEVGSGNLKFLNLS 507
           N ++       +++  +  + + NLS
Sbjct: 400 NPMNIEPGDGGVYDQATNTITWENLS 425

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 96.7 bits (241), Expect = 4e-21
 Identities = 71/432 (16%), Positives = 137/432 (31%), Gaps = 62/432 (14%)

Query: 141 SLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRS 200
           ++  + L  LT L      ++         +  L  L  L  +  +++  ++  L+++ +
Sbjct: 35  TISEEQLATLTSLDCHNSSITDM-----TGIEKLTGLTKLICTSNNITT-LD--LSQNTN 86

Query: 201 LSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLL 260
           L+ +    N  L++    +  LT L  L+     L  K        P L  L+ + N L 
Sbjct: 87  LTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKLT-KLDVSQN--PLLTYLNCARNTL- 139

Query: 261 QGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQ 320
             +  +   N+ L +L          L   +     LT ++ S    T  +  S      
Sbjct: 140 --TEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE-LDVS--QNKL 192

Query: 321 LFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLS 380
           L  ++  +N+       L+++  L  LD S N     ++      L  L       N L+
Sbjct: 193 LNRLNCDTNNITKL--DLNQNIQLTFLDCSSNK----LTEIDVTPLTQLTYFDCSVNPLT 246

Query: 381 GSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFEL 440
             +  S      L  L            EI    ++ L      G R    + ++     
Sbjct: 247 -ELDVSTL--SKLTTLHCIQTDLL----EIDLTHNTQLIYFQAEGCRKIKELDVT---HN 296

Query: 441 RNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGN 500
             LY LD  +   + L L+              +L  L +++ +++      +    +  
Sbjct: 297 TQLYLLDCQAAGITELDLS-----------QNPKLVYLYLNNTELT-----ELDVSHNTK 340

Query: 501 LKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTS--------YVDYSNN 552
           LK L+  +  +        I  +        Q          N S         +D   N
Sbjct: 341 LKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGN 400

Query: 553 NFTSIPADIGNF 564
                P D G +
Sbjct: 401 PMNIEPGDGGVY 412

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 94.0 bits (234), Expect = 3e-20
 Identities = 74/412 (17%), Positives = 135/412 (32%), Gaps = 57/412 (13%)

Query: 295 ENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNL 354
           +N      ++         S   L  L  +D  ++     +  + K   L  L  + NN 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MTGIEKLTGLTKLICTSNN- 75

Query: 355 SGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVS 414
              I++    Q  NL  +    N L+ ++   +  L  L  L        N+L ++    
Sbjct: 76  ---ITTLDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDT----NKLTKLDVSQ 125

Query: 415 SSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQ 474
           + +L  L+ + N L   + +S       L  LD   NK                +  Q+Q
Sbjct: 126 NPLLTYLNCARNTLT-EIDVS---HNTQLTELDCHLNKKITK----------LDVTPQTQ 171

Query: 475 LSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLR 534
           L+ LD S N+I+      +    +  L  LN   N +  L +      + FLD  SN+L 
Sbjct: 172 LTTLDCSFNKITE-----LDVSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLT 225

Query: 535 GNIPYMSPNTS--YVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKAT 592
             I  ++P T   Y D S N  T +   +      ++          L  +    +   T
Sbjct: 226 -EID-VTPLTQLTYFDCSVNPLTELD--VSTL---SKLTTLHCIQTDLLEI---DLTHNT 275

Query: 593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG 652
                          +     T+    L +L+     +   L  +  P    L  L L+ 
Sbjct: 276 QLIYFQAEGCRKIKELDVTHNTQ----LYLLDCQAAGIT-ELDLSQNP---KLVYLYLNN 327

Query: 653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS 704
            +L  +    +++   L+ L   + +I D     +    +L           
Sbjct: 328 TELTEL---DVSHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.6 bits (194), Expect = 3e-15
 Identities = 69/514 (13%), Positives = 151/514 (29%), Gaps = 104/514 (20%)

Query: 368 NLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNR 427
           N    V     +  +   S   L  L  L   N+   + +  I  ++   L  L  + N 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MTGIEKLTG--LTKLICTSNN 75

Query: 428 LEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISG 487
           +   + +S   +  NL  L   SNK + L            +   ++L+ L+   N+++ 
Sbjct: 76  ITT-LDLS---QNTNLTYLACDSNKLTNL-----------DVTPLTKLTYLNCDTNKLTK 120

Query: 488 EVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMS-PNTSY 546
              +      +  L +LN + N +  + +    + +  LD H N+    +        + 
Sbjct: 121 LDVS-----QNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTT 174

Query: 547 VDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSG 606
           +D S N  T +  D+                N++  +    + +      LD S+N L+ 
Sbjct: 175 LDCSFNKITEL--DVSQN---KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT- 225

Query: 607 TIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANC 666
            I    +T+    L   +   N L   L  +       L  L      L  +    L + 
Sbjct: 226 EIDVTPLTQ----LTYFDCSVNPLT-ELDVSTLSK---LTTLHCIQTDLLEI---DLTHN 274

Query: 667 NMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLAC 726
             L                 + + + L +L  ++   +  +   +N    P L  + L  
Sbjct: 275 TQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELDLSQN----PKLVYLYLNN 327

Query: 727 NKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNI 786
            + +                                              E+ +     +
Sbjct: 328 TELT----------------------------------------------ELDVSHNTKL 341

Query: 787 FTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS 846
             S+   + + +      +G+  +L     +          +  N     ++   + +  
Sbjct: 342 -KSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQF 398

Query: 847 G---KIPAQLASLNFLSVLNLSYNNLVGKIPTST 877
           G    I      +   +   +++ NL    P  T
Sbjct: 399 GNPMNIEPGDGGVYDQATNTITWENLSTDNPAVT 432

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 73.2 bits (180), Expect = 1e-13
 Identities = 59/462 (12%), Positives = 138/462 (29%), Gaps = 99/462 (21%)

Query: 439 ELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGS 498
           +L  L +LD  ++  +           +  ++  + L+ L  + N I+      +    +
Sbjct: 40  QLATLTSLDCHNSSIT----------DMTGIEKLTGLTKLICTSNNITT-----LDLSQN 84

Query: 499 GNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIP 558
            NL +L    N + +L +   ++ + +L+  +N+L       +P  +Y++ + N  T I 
Sbjct: 85  TNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID 143

Query: 559 ADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSS 618
                                        V   T    LD   N     +     T+   
Sbjct: 144 -----------------------------VSHNTQLTELDCHLNKKITKLDVTPQTQ--- 171

Query: 619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNY 678
            L  L+   N +    ++     +  L  L+   N +  +    L     L  LD  SN 
Sbjct: 172 -LTTLDCSFNKI----TELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNK 223

Query: 679 ISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWL 738
           +++     +   + L       N  +  +           L  +          +     
Sbjct: 224 LTE-ID--VTPLTQLTYFDCSVNPLT-ELDVSTL----SKLTTLHCIQTDLL-EIDLTHN 274

Query: 739 LTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVP-NIFTSIDFSSNNF 797
             ++  + +   ++  L +   +                + LL       T +D S N  
Sbjct: 275 TQLIYFQAEGCRKIKELDVTHNTQ---------------LYLLDCQAAGITELDLSQN-- 317

Query: 798 EGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLN 857
                        L  L +++  LT  +     +  +++SL     ++     + +  + 
Sbjct: 318 -----------PKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIP 361

Query: 858 FLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLT 899
            L+    +    +     +    S +          +G P+ 
Sbjct: 362 ALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.9 bits (244), Expect = 1e-21
 Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 14/235 (5%)

Query: 198 SRSLSVIRLHYNY--GLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLS 255
             +   + L  N    + + T    HL +L+ L L    ++         + +L TL+L 
Sbjct: 74  PSNTRYLNLMENNIQMIQADT--FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131

Query: 256 INQLLQGSLPN--FPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPP 313
            N L    +P+  F   S LR+L L +  +      +   + +L R+++        I  
Sbjct: 132 DNWL--TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 314 SM-ANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIV 372
                L  L +++    +    +P+L     L  L++S N+       +F   L +L+ +
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIRPGSFH-GLSSLKKL 247

Query: 373 VLGHNSLSGSIPRSLFL-LPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGN 426
            + ++ +S  I R+ F  L +L  L L++N   + LP         L +L L  N
Sbjct: 248 WVMNSQVS-LIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.0 bits (226), Expect = 3e-19
 Identities = 52/291 (17%), Positives = 92/291 (31%), Gaps = 43/291 (14%)

Query: 415 SSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQ 474
           S+    +  +   L   VP  I     N   L+L  N    ++            ++   
Sbjct: 53  SNQFSKVVCTRRGLSE-VPQGIP---SNTRYLNLMENNIQMIQ-----ADT---FRHLHH 100

Query: 475 LSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQE--PYSISGIRFLDLHSNQ 532
           L VL +  N I  ++    +  G  +L  L L  N +  +       +S +R L L +N 
Sbjct: 101 LEVLQLGRNSIR-QIEVGAFN-GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158

Query: 533 LRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKAT 592
           +                      SIP+   N +        +     L  +   +     
Sbjct: 159 I---------------------ESIPSYAFNRVPSLMRLD-LGELKKLEYISEGAFEGLF 196

Query: 593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG 652
           N + L+L   N+   +P          LE L +  N+    +    F G   L+ L +  
Sbjct: 197 NLKYLNLGMCNIK-DMPNL---TPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMN 251

Query: 653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNF 703
           +Q+  +   +      L  L+L  N +S            L  L L  N +
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 90.6 bits (225), Expect = 4e-19
 Identities = 66/327 (20%), Positives = 104/327 (31%), Gaps = 87/327 (26%)

Query: 341 SRNLNNLDLSFNNLS---GGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEML 396
           S   + +  +   LS    GI S       N + + L  N++   I    F  L +LE+L
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGIPS-------NTRYLNLMENNIQ-MIQADTFRHLHHLEVL 104

Query: 397 QLSNNQFENQLPEISNVSSSV------LFDLDLSGNRLEGPVPISIFFELRNLYTLDLSS 450
           QL  N        I  +          L  L+L  N L   +P   F  L  L  L L +
Sbjct: 105 QLGRNS-------IRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRN 156

Query: 451 NKFSRLKLASSKPRAIPILKNQSQLSVLDISD-NQISGEVPNWIWEVGSGNLKFLNLSHN 509
           N    +                  L  LD+ +  ++   +    +E G  NLK+LNL   
Sbjct: 157 NPIESIPSY--------AFNRVPSLMRLDLGELKKLE-YISEGAFE-GLFNLKYLNLGMC 206

Query: 510 LVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETE 569
            +  +     + G+  L++  N                         I            
Sbjct: 207 NIKDMPNLTPLVGLEELEMSGNHF---------------------PEIRP---------- 235

Query: 570 YFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNN 629
                    S  G+        ++ + L + N+ +S  I        +S L  LNL  NN
Sbjct: 236 --------GSFHGL--------SSLKKLWVMNSQVS-LIERNAFDGLAS-LVELNLAHNN 277

Query: 630 LNGTLSDTIFPGDCGLQILDLSGNQLQ 656
           L+ +L   +F     L  L L  N   
Sbjct: 278 LS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.9 bits (200), Expect = 5e-16
 Identities = 65/331 (19%), Positives = 109/331 (32%), Gaps = 81/331 (24%)

Query: 541 SPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLS 600
           S   S V  +    + +P  I                       P +       + L+L 
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGI-----------------------PSNT------RYLNLM 83

Query: 601 NNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP 660
            NN+   I A         LEVL LGRN++   +    F G   L  L+L  N L  +  
Sbjct: 84  ENNIQ-MIQADTFRHLHH-LEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPS 140

Query: 661 KSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQ 720
            +    + L+ L LR+N I            SL  L L                     +
Sbjct: 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-----------------K 183

Query: 721 IVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKL 780
           +  ++   F G  + K+L               +LG         ++            L
Sbjct: 184 LEYISEGAFEGLFNLKYL---------------NLG----MCNIKDMP----------NL 214

Query: 781 LKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDL 840
             +  +   ++ S N+F    P       SL  L + ++ ++    ++F  L  +  L+L
Sbjct: 215 TPLVGL-EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273

Query: 841 SMNNLSGKIPAQ-LASLNFLSVLNLSYNNLV 870
           + NNLS  +P      L +L  L+L +N   
Sbjct: 274 AHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 2e-15
 Identities = 53/271 (19%), Positives = 92/271 (33%), Gaps = 32/271 (11%)

Query: 93  NLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSG--IVPIEYSYTVWIANLSLFLQNLTEL 150
             + +  ++ G + E+P  I   +    L+L    I  I+          +   ++L  L
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQ----------ADTFRHLHHL 101

Query: 151 TELHLDRVDLSA--SGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHY 208
             L L R  +     G     A + L +L  L L    L+   +        L  + L  
Sbjct: 102 EVLQLGRNSIRQIEVG-----AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156

Query: 209 N--YGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKIL-HVPTLETLDLSINQLLQGSLP 265
           N    + S       + +L  LDL E        E     +  L+ L+L +  +    +P
Sbjct: 157 NPIESIPSYA--FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--DMP 212

Query: 266 NFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSM-ANLTQLFHM 324
           N      L +L +S        P S   L +L ++ V +   +  I  +    L  L  +
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVEL 271

Query: 325 DFSSNHF-FGPIPSLHKSRNLNNLDLSFNNL 354
           + + N+    P       R L  L L  N  
Sbjct: 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.5 bits (178), Expect = 2e-13
 Identities = 40/183 (21%), Positives = 66/183 (36%), Gaps = 10/183 (5%)

Query: 524 RFLDLHSNQLRGNIPY-MSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAG 582
             +      L   +P  +  NT Y++   NN   I AD    +   E        NS+  
Sbjct: 57  SKVVCTRRGLS-EVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQL--GRNSIRQ 113

Query: 583 VIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGD 642
           +   +     +   L+L +N L+  IP+      S  L  L L  N +  ++    F   
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSK-LRELWLRNNPIE-SIPSYAFNRV 170

Query: 643 CGLQILDLSG-NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSN 701
             L  LDL    +L+ +   +      L+ L+L    I D     L     L+ L +  N
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGN 228

Query: 702 NFS 704
           +F 
Sbjct: 229 HFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 4e-13
 Identities = 57/274 (20%), Positives = 96/274 (35%), Gaps = 63/274 (22%)

Query: 69  LQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQ--------GGFAGEIPTEISSLTRLVT 120
            + LNL     +  Q      +L +L  L L +        G F G        L  L T
Sbjct: 77  TRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNSIRQIEVGAFNG--------LASLNT 127

Query: 121 LDLSG--IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQ 178
           L+L    +  I           S   + L++L EL L    + +  +    A + +P+L 
Sbjct: 128 LELFDNWLTVIP----------SGAFEYLSKLRELWLRNNPIESIPSY---AFNRVPSLM 174

Query: 179 VLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGK 238
            L L                  L  I        S G      L NLK L+L  C ++  
Sbjct: 175 RLDLGEL------KK-------LEYI--------SEGA--FEGLFNLKYLNLGMCNIK-- 209

Query: 239 FPEKILHVPTLETLDLSINQLLQGSLPN--FPKNSSLRDLILSHTGLSGTLPDSIGNLEN 296
               +  +  LE L++S N      +    F   SSL+ L + ++ +S    ++   L +
Sbjct: 210 DMPNLTPLVGLEELEMSGNHF--PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267

Query: 297 LTRVEVSSCNFTGPIPPSM-ANLTQLFHMDFSSN 329
           L  + ++  N +  +P  +   L  L  +    N
Sbjct: 268 LVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 47/220 (21%), Positives = 75/220 (34%), Gaps = 45/220 (20%)

Query: 65  DLQYLQSLNLGFTLFKGFQIPSR-LGNLTNLTYLNLSQGGFAGEIPTEI-SSLTRLVTLD 122
            L  L +L L         IPS     L+ L  L L        IP+   + +  L+ LD
Sbjct: 121 GLASLNTLELFDNWLT--VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLD 177

Query: 123 LSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSL 182
           L  +  +EY     I+  +   + L  L  L+L   ++          L+ L  L+ L +
Sbjct: 178 LGELKKLEY-----ISEGAF--EGLFNLKYLNLGMCNIKDMPN-----LTPLVGLEELEM 225

Query: 183 SGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEK 242
           SG                           +  G+     L++LK L +    +       
Sbjct: 226 SGNHFP----------------------EIRPGS--FHGLSSLKKLWVMNSQVSLIERNA 261

Query: 243 ILHVPTLETLDLSINQL--LQGSLPNFPKNSSLRDLILSH 280
              + +L  L+L+ N L  L   L  F     L +L L H
Sbjct: 262 FDGLASLVELNLAHNNLSSLPHDL--FTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 8/79 (10%)

Query: 809 RSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSYN 867
             L  L + +N +      +F  +  +  LDL        I       L  L  LNL   
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 868 NLVGKIPTSTQLQSFSPTS 886
           N+         + + +P  
Sbjct: 207 NI-------KDMPNLTPLV 218

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 94.6 bits (235), Expect = 3e-21
 Identities = 59/316 (18%), Positives = 96/316 (30%), Gaps = 33/316 (10%)

Query: 185 CDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKIL 244
           C+ S P   + +    L    +    G  S    L  +     L      +      K L
Sbjct: 15  CNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDII------KSL 68

Query: 245 HVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSS 304
            +  L      I   +          S L++L L +  ++GT P  +          ++ 
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 305 CNFTGPIPPSMAN------LTQLFHMDFSSNHFFG-PIPSLHKSRNLNNLDLSFNNLSGG 357
            N +     +            L  +  +  H        +     L+ LDLS N   G 
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 358 IS---STFWEQLLNLQIVVLGHN---SLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIS 411
                +    +   LQ++ L +    + SG           L+ L LS+N   +     S
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 412 NVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKN 471
               S L  L+LS   L+  VP  +      L  LDLS N+  R           P    
Sbjct: 249 CDWPSQLNSLNLSFTGLKQ-VPKGLP---AKLSVLDLSYNRLDR----------NPSPDE 294

Query: 472 QSQLSVLDISDNQISG 487
             Q+  L +  N    
Sbjct: 295 LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.1 bits (213), Expect = 2e-18
 Identities = 51/251 (20%), Positives = 82/251 (32%), Gaps = 21/251 (8%)

Query: 445 TLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFL 504
           +L L        ++ S        +   S L  L + + +++G  P  + E    +L  L
Sbjct: 67  SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126

Query: 505 NLSHNLVVSLQE------PYSISGIRFLDLHSNQLRG---NIPYMSPNTSYVDYSNNNFT 555
           NL +    +          +   G++ L +              + P  S +D S+N   
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

Query: 556 SIPADI-----GNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPA 610
                I       F +        A   + +GV           Q LDLS+N+L     A
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

Query: 611 CLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQ 670
                 S  L  LNL    L   +   +      L +LDLS N+L      S      + 
Sbjct: 247 PSCDWPSQ-LNSLNLSFTGLK-QVPKGLPA---KLSVLDLSYNRLDRNP--SPDELPQVG 299

Query: 671 VLDLRSNYISD 681
            L L+ N   D
Sbjct: 300 NLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.9 bits (210), Expect = 6e-18
 Identities = 47/269 (17%), Positives = 84/269 (31%), Gaps = 25/269 (9%)

Query: 182 LSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHL-----TNLKALDLSECGLQ 236
           L   D    +  +    +SLS+ RL               L     + L+ L L    + 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 237 GKFPEKILHVPTLETLDLSINQLLQGSLPNFP------KNSSLRDLILSHTGLSGTLPDS 290
           G  P  +L     +   L++  +   +   +           L+ L ++         + 
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 291 IGNLENLTRVEVSSCNFTGPI-------PPSMANLTQLFHMDFSSNHFFGPIPSL-HKSR 342
           +     L+ +++S     G         P     L  L   +       G   +L     
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 343 NLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQ 402
            L  LDLS N+L     +   +    L  + L    L   +P+ L     L +L LS N+
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR 285

Query: 403 FENQLPEISNVSSSVLFDLDLSGNRLEGP 431
            +   P    +    + +L L GN     
Sbjct: 286 LDR-NPSPDELPQ--VGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.6 bits (209), Expect = 7e-18
 Identities = 54/302 (17%), Positives = 87/302 (28%), Gaps = 50/302 (16%)

Query: 301 EVSSCNFTGPIPPS--------------MANLTQLFHMDFSSNHFFGPIPSLHKSRNLNN 346
           E  SCNF+ P P                      L ++    +            ++L+ 
Sbjct: 11  ESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSL 70

Query: 347 LDLSFNNLSGGISSTFWE----QLLNLQIVVLGHNSLSGSIPRSLFLL--PNLEMLQLSN 400
             L+           F       +  LQ + L +  ++G+ P  L     P+L +L L N
Sbjct: 71  KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130

Query: 401 NQ---FENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKF---- 453
                 +  L E+       L  L ++                  L TLDLS N      
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGER 189

Query: 454 -------------------SRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIW 494
                                  + +       +   + QL  LD+S N +         
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-AAGAPS 248

Query: 495 EVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGN-IPYMSPNTSYVDYSNNN 553
                 L  LNLS   +  + +    + +  LDL  N+L  N  P   P    +    N 
Sbjct: 249 CDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNP 307

Query: 554 FT 555
           F 
Sbjct: 308 FL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.5 bits (201), Expect = 8e-17
 Identities = 57/272 (20%), Positives = 92/272 (33%), Gaps = 39/272 (14%)

Query: 146 NLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIR 205
               L  L +    + +        +  +  LQ L+L   +++G     L ++    +  
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 206 LH-YNYGLSSGTEFLAHL-----TNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQL 259
           L+  N   ++   +LA L       LK L +++        E++   P L TLDLS N  
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 260 LQG----SLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSM 315
           L      S     K  +L+ L L + G+                        +G      
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGME---------------------TPSGVCSALA 224

Query: 316 ANLTQLFHMDFSSNHFFGPIPSL--HKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVV 373
           A   QL  +D S N       +        LN+L+LSF  L              L ++ 
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA----KLSVLD 280

Query: 374 LGHNSLSGSIPRSLFLLPNLEMLQLSNNQFEN 405
           L +N L    P     LP +  L L  N F +
Sbjct: 281 LSYNRLD-RNPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 9e-12
 Identities = 52/310 (16%), Positives = 80/310 (25%), Gaps = 57/310 (18%)

Query: 572 YFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSG-TIPACLITKSSSTLEVLNLGRNNL 630
                +          + K+ + + L +    +    +   L     S L+ L L    +
Sbjct: 48  LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 631 NGTLSDTIFPGDC-GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDN----FPC 685
            GT    +       L IL+L            LA         L+   I+      F C
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 686 -WLRNASSLQVLVLRSNNFSGHISCPRNKV--SWPLLQIVDLACNKFSGRLSQKWLLTMM 742
             +R   +L  L L  N   G            +P LQ++ L                  
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME------------ 214

Query: 743 VAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIP 802
                                        T  G+   L         +D S N+      
Sbjct: 215 -----------------------------TPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 803 VEMGRF-RSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSV 861
                +   L +LN+S   L          L     LDLS N L    P     L  +  
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDR-NP-SPDELPQVGN 300

Query: 862 LNLSYNNLVG 871
           L+L  N  + 
Sbjct: 301 LSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.7 bits (147), Expect = 7e-10
 Identities = 48/241 (19%), Positives = 80/241 (33%), Gaps = 32/241 (13%)

Query: 592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGT---LSDTIFPGDCGLQIL 648
           +  Q L L N  ++GT P  L+  +   L +LNL   +       L++       GL++L
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154

Query: 649 DLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCW----LRNASSLQVLVLRSNNF- 703
            ++         + +     L  LDL  N                  +LQVL LR+    
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 704 SGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQ 763
           +    C     +   LQ +DL+ N                      S++N L +      
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP--------SQLNSLNLS--FTG 264

Query: 764 FYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTG 823
             +V      KG+  KL       + +D S N  +   P        +  L++  N    
Sbjct: 265 LKQVP-----KGLPAKL-------SVLDLSYNRLDR-NPSP-DELPQVGNLSLKGNPFLD 310

Query: 824 S 824
           S
Sbjct: 311 S 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 43/235 (18%), Positives = 72/235 (30%), Gaps = 34/235 (14%)

Query: 46  LDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFA 105
           L+++       LE      DL  L   N+ +     +    +      L  L+++Q    
Sbjct: 105 LEVTGTAPPPLLEAT--GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 106 GEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGT 165
                ++     L TLDLS    +     +     +L       L  L L    +     
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLIS----ALCPLKFPTLQVLALRNAGMETPSG 218

Query: 166 EWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNL 225
                 +    LQ L LS   L                                   + L
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAG-----------------------APSCDWPSQL 255

Query: 226 KALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSH 280
            +L+LS  GL+ + P+ +     L  LDLS N+L     P+  +   + +L L  
Sbjct: 256 NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL--DRNPSPDELPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 41/217 (18%), Positives = 67/217 (30%), Gaps = 14/217 (6%)

Query: 526 LDLHSNQLRGNIPYMSPNTSYVDYSNNNFTS-IPADIGNFMSETEYFYFVAANNSLAGVI 584
           +D  ++  +      S +   +        S I       +  +        N  + G  
Sbjct: 52  VDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA 111

Query: 585 PESVCKATNFQVLDLSNNNLS----GTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFP 640
           P  + +AT   +  L+  N+S        A L       L+VL++ + +     S     
Sbjct: 112 PPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVR 170

Query: 641 GDCGLQILDLSGNQLQGVVPKSLANCNM----LQVLDLRSNY---ISDNFPCWLRNASSL 693
               L  LDLS N   G      A C +    LQVL LR+      S            L
Sbjct: 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230

Query: 694 QVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFS 730
           Q L L  N+         +      L  ++L+     
Sbjct: 231 QGLDLSHNSLRDAAG-APSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 37/221 (16%), Positives = 68/221 (30%), Gaps = 50/221 (22%)

Query: 669 LQVLDLRSNYISDNFPCW---LRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLA 725
           L+ L +R+  I          +   S LQ L L +   +G    P  + + P L I++L 
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 726 CNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPN 785
              ++ R                 + +  L   +                          
Sbjct: 130 NVSWATR----------------DAWLAELQQWLKPG----------------------- 150

Query: 786 IFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSI-------PSSFGNLKEIESL 838
               +  +  +       ++  F +L  L++S N   G         P  F  L+ +   
Sbjct: 151 -LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 839 DLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQL 879
           +  M   SG   A  A+   L  L+LS+N+L       +  
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 94.3 bits (235), Expect = 2e-20
 Identities = 78/486 (16%), Positives = 151/486 (31%), Gaps = 98/486 (20%)

Query: 270 NSSLRDLILSHTGLSGT-LPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSS 328
           +  ++ L +    LS     + +  L+    V +  C  T        +++         
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT---EARCKDISSA------- 51

Query: 329 NHFFGPIPSLHKSRNLNNLDLSFNNLSG----GISSTFWEQLLNLQIVVLGHNSLS---- 380
                    L  +  L  L+L  N L       +          +Q + L +  L+    
Sbjct: 52  ---------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102

Query: 381 GSIPRSLFLLPNLEMLQLSNNQFENQ-LPEISNV---SSSVLFDLDLSGNRLEGPVPISI 436
           G +  +L  LP L+ L LS+N   +  L  +          L  L L    L       +
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162

Query: 437 FFELR---NLYTLDLSSNKFSRLKLASSKPRAI-PILK-NQSQLSVLDISDNQISGEVPN 491
              LR   +   L +S+N  +   +     R +   LK +  QL  L +    ++ +   
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGV-----RVLCQGLKDSPCQLEALKLESCGVTSDNCR 217

Query: 492 WIWEVGSGN--LKFLNLSHN---------LVVSLQEPYSISGIRFLDLHSNQLR------ 534
            +  + +    L+ L L  N         L   L  P S   +R L +    +       
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS--RLRTLWIWECGITAKGCGD 275

Query: 535 -GNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATN 593
              +     +   +  + N        +G+                L   + E  C+   
Sbjct: 276 LCRVLRAKESLKELSLAGNE-------LGD-----------EGARLLCETLLEPGCQ--- 314

Query: 594 FQVLDLSNNNLSGTIPACLIT--KSSSTLEVLNLGRNNLNGT----LSDTIFPGDCGLQI 647
            + L + + + +    +   +    +  L  L +  N L       L   +      L++
Sbjct: 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374

Query: 648 LDLSGNQL--QGVVP--KSLANCNMLQVLDLRSNYISDNFPCWL-----RNASSLQVLVL 698
           L L+   +          +L   + L+ LDL +N + D     L     +    L+ LVL
Sbjct: 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 434

Query: 699 RSNNFS 704
               +S
Sbjct: 435 YDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 89.6 bits (223), Expect = 7e-19
 Identities = 82/444 (18%), Positives = 149/444 (33%), Gaps = 74/444 (16%)

Query: 140 LSLFLQNLTELTELHLDRVDLSASGTEW-CKALSFLPNLQVLSLSGCDLSGPINHYLAK- 197
            +  L  L +   + LD   L+ +  +    AL   P L  L+L   +L     H + + 
Sbjct: 20  WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79

Query: 198 ----SRSLSVIRLHYNYGLSSGTEFLA----HLTNLKALDLSECGLQGK----FPEKILH 245
               S  +  + L       +G   L+     L  L+ L LS+  L         E +L 
Sbjct: 80  LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139

Query: 246 V-PTLETLDLSINQLLQGSLPNF----PKNSSLRDLILSHTGLSGT----LPDSIG-NLE 295
               LE L L    L   S              ++L +S+  ++      L   +  +  
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC 199

Query: 296 NLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLS 355
            L  +++ SC  T     +  +L  +                +    +L  L L  N L 
Sbjct: 200 QLEALKLESCGVT---SDNCRDLCGI----------------VASKASLRELALGSNKLG 240

Query: 356 GG----ISSTFWEQLLNLQIVVLGHNSLS----GSIPRSLFLLPNLEMLQLSNNQFEN-- 405
                 +          L+ + +    ++    G + R L    +L+ L L+ N+  +  
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 406 --QLPEISNVSSSVLFDLDLSGNRL--EGPVPISIFFE-LRNLYTLDLSSNKFSRLKLAS 460
              L E        L  L +             S      R L  L +S+N+   L+ A 
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR---LEDAG 357

Query: 461 SKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGN--LKFLNLSHN--------- 509
            +     + +  S L VL ++D  +S    + +      N  L+ L+LS+N         
Sbjct: 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 417

Query: 510 LVVSLQEPYSISGIRFLDLHSNQL 533
           LV S+++P  +  +  L L+    
Sbjct: 418 LVESVRQPGCL--LEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 88.9 bits (221), Expect = 1e-18
 Identities = 89/485 (18%), Positives = 153/485 (31%), Gaps = 76/485 (15%)

Query: 69  LQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGF----AGEIPTEISSLTRLVTLDLS 124
           +QSL++        +    L  L     + L   G       +I + +     L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 125 GIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEW-CKALSFLPNLQVLSLS 183
               +       +           ++ +L L    L+ +G       L  LP LQ L LS
Sbjct: 65  S-NELGDVGVHCVL--QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 184 GCDLSGPINHYLAKSR-----SLSVIRLHYNYGLSSGTEFLA----HLTNLKALDLSECG 234
              L       L +        L  ++L Y    ++  E LA       + K L +S   
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 235 LQGKFPEKI---LHVP--TLETLDLSINQLLQGSLPNF----PKNSSLRDLILSHTGLSG 285
           +       +   L      LE L L    +   +  +        +SLR+L L    L  
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 286 T-----LPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHK 340
                  P  +     L  + +  C  T        +L +                 L  
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGIT---AKGCGDLCR----------------VLRA 282

Query: 341 SRNLNNLDLSFNNLSG----GISSTFWEQLLNLQIVVLGHNSLSG----SIPRSLFLLPN 392
             +L  L L+ N L       +  T  E    L+ + +   S +          L     
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342

Query: 393 LEMLQLSNNQFENQ-LPEISNV---SSSVLFDLDLSGNRL--EGPVPI-SIFFELRNLYT 445
           L  LQ+SNN+ E+  + E+        SVL  L L+   +       + +      +L  
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402

Query: 446 LDLSSNKFSR---LKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGN-- 500
           LDLS+N       L+L  S      + +    L  L + D   S E+ + +  +      
Sbjct: 403 LDLSNNCLGDAGILQLVES------VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPS 456

Query: 501 LKFLN 505
           L+ ++
Sbjct: 457 LRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 87.3 bits (217), Expect = 5e-18
 Identities = 94/503 (18%), Positives = 166/503 (33%), Gaps = 108/503 (21%)

Query: 223 TNLKALDLSECGLQGKFPEKILHV-PTLETLDLSINQLLQGSLPNF----PKNSSLRDLI 277
            ++++LD+    L      ++L +    + + L    L +    +       N +L +L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 278 LSHTGLSGTLPDSIGNL-----ENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFF 332
           L    L       +          + ++ + +C  TG      A    L           
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG------AGCGVLSST-------- 108

Query: 333 GPIPSLHKSRNLNNLDLSFNNLSGG----ISSTFWEQLLNLQIVVLGHNSLSGSIPRSLF 388
                L     L  L LS N L       +     +    L+ + L + SLS +    L 
Sbjct: 109 -----LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 389 LL----PNLEMLQLSNNQFENQ----LPEISNVSSSVLFDLDLSGNRLEGPVPISIFFEL 440
            +    P+ + L +SNN         L +    S   L  L L    +       +   +
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 441 R---NLYTLDLSSNKFSR---LKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIW 494
               +L  L L SNK       +L         +L   S+L  L I +  I+ +    + 
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPG------LLHPSSRLRTLWIWECGITAKGCGDLC 277

Query: 495 EVGSGN--LKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTS--YVDYS 550
            V      LK L+L+ N +          G R L      L        P      +   
Sbjct: 278 RVLRAKESLKELSLAGNEL-------GDEGARLL---CETLL------EPGCQLESLWVK 321

Query: 551 NNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNL--SGTI 608
           + +FT+                        + V+ ++         L +SNN L  +G  
Sbjct: 322 SCSFTAACCS------------------HFSSVLAQN----RFLLELQISNNRLEDAGVR 359

Query: 609 PAC-LITKSSSTLEVLNLGRNNLN----GTLSDTIFPGDCGLQILDLSGNQL--QGVVP- 660
             C  + +  S L VL L   +++     +L+ T+   +  L+ LDLS N L   G++  
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL-LANHSLRELDLSNNCLGDAGILQL 418

Query: 661 -KSLANCN-MLQVLDLRSNYISD 681
            +S+     +L+ L L   Y S+
Sbjct: 419 VESVRQPGCLLEQLVLYDIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 83.5 bits (207), Expect = 7e-17
 Identities = 79/497 (15%), Positives = 153/497 (30%), Gaps = 101/497 (20%)

Query: 176 NLQVLSLSGCDLSGPINHYLAKS-RSLSVIRLHYNY----GLSSGTEFLAHLTNLKALDL 230
           ++Q L +   +LS      L    +   V+RL             +  L     L  L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 231 SECGLQGKFPEKI---LHVP--TLETLDLSINQLLQGSL----PNFPKNSSLRDLILSHT 281
               L       +   L  P   ++ L L    L                +L++L LS  
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 282 GLSGTLPDSIGNLE-----NLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP 336
            L       +          L ++++  C+ +     S   L  +               
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS---AASCEPLASV--------------- 165

Query: 337 SLHKSRNLNNLDLSFNNLSGG----ISSTFWEQLLNLQIVVLGHNSLS----GSIPRSLF 388
            L    +   L +S N+++      +     +    L+ + L    ++      +   + 
Sbjct: 166 -LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 389 LLPNLEMLQLSNNQFENQ----LPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELR--- 441
              +L  L L +N+  +     L       SS L  L +    +       +   LR   
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284

Query: 442 NLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGN- 500
           +L  L L+ N+   L    ++     +L+   QL  L +     +    +    V + N 
Sbjct: 285 SLKELSLAGNE---LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341

Query: 501 -LKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTS--YVDYSNNNFTSI 557
            L  L +S+N +         +G+R L      L        P +    +  ++ + +  
Sbjct: 342 FLLELQISNNRL-------EDAGVREL---CQGLG------QPGSVLRVLWLADCDVSD- 384

Query: 558 PADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACL---IT 614
                            ++ +SLA  +  +     + + LDLSNN L       L   + 
Sbjct: 385 -----------------SSCSSLAATLLAN----HSLRELDLSNNCLGDAGILQLVESVR 423

Query: 615 KSSSTLEVLNLGRNNLN 631
           +    LE L L     +
Sbjct: 424 QPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.7 bits (166), Expect = 8e-12
 Identities = 49/313 (15%), Positives = 100/313 (31%), Gaps = 65/313 (20%)

Query: 413 VSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRL---KLASSKPRAIPIL 469
           +S   +  LD+    L       +   L+    + L     +      ++S        L
Sbjct: 1   MSLD-IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-------AL 52

Query: 470 KNQSQLSVLDISDNQISGEVPNWIWE---VGSGNLKFLNLSHNLVVSLQEPYSISGIRFL 526
           +    L+ L++  N++     + + +     S  ++ L+L +  +       + +G   L
Sbjct: 53  RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL-------TGAGCGVL 105

Query: 527 DLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPE 586
              S+ LR       P    +  S+N                           L   + +
Sbjct: 106 ---SSTLRTL-----PTLQELHLSDNLLGDAGL------------------QLLCEGLLD 139

Query: 587 SVCKATNFQVLDLSNNNLSGTIPACLIT--KSSSTLEVLNLGRNNLNGT----LSDTIFP 640
             C+    + L L   +LS      L +  ++    + L +  N++N      L   +  
Sbjct: 140 PQCR---LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD 196

Query: 641 GDCGLQILDLSGNQL--QGVVP--KSLANCNMLQVLDLRSNYISDN-----FPCWLRNAS 691
             C L+ L L    +           +A+   L+ L L SN + D       P  L  +S
Sbjct: 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256

Query: 692 SLQVLVLRSNNFS 704
            L+ L +     +
Sbjct: 257 RLRTLWIWECGIT 269

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.9 bits (151), Expect = 4e-10
 Identities = 79/470 (16%), Positives = 149/470 (31%), Gaps = 103/470 (21%)

Query: 441 RNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEV--GS 498
            ++ +LD+   + S  + A        +L    Q  V+ + D  ++      I      +
Sbjct: 3   LDIQSLDIQCEELSDARWAE-------LLPLLQQCQVVRLDDCGLTEARCKDISSALRVN 55

Query: 499 GNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTS--YVDYSNNNFTS 556
             L  LNL  N    L +     G+  +      L+      +P+     +   N   T 
Sbjct: 56  PALAELNLRSN---ELGD----VGVHCV---LQGLQ------TPSCKIQKLSLQNCCLT- 98

Query: 557 IPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGT---IPACLI 613
                G                   GV+  ++      Q L LS+N L      +    +
Sbjct: 99  ---GAG------------------CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 137

Query: 614 TKSSSTLEVLNLGRNNLNGTLSDTIFP---GDCGLQILDLSGNQLQGVVPKSLA-----N 665
                 LE L L   +L+    + +          + L +S N +     + L      +
Sbjct: 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197

Query: 666 CNMLQVLDLRSNYISD----NFPCWLRNASSLQVLVLRSNNFSG----HISCPRNKVSWP 717
              L+ L L S  ++     +    + + +SL+ L L SN         +       S  
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257

Query: 718 LLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEV----NHLGIEMPSNQFYEVRVTVTV 773
           L + + +     + +      L  ++   +S  E+    N LG E               
Sbjct: 258 L-RTLWIWECGITAKGCGD--LCRVLRAKESLKELSLAGNELGDE-------------GA 301

Query: 774 KGIEIKLLKVPNIFTSIDFSSNNFEGPIPVE-----MGRFRSLYALNMSHNALTGSIPSS 828
           + +   LL+      S+   S +F            + + R L  L +S+N L  +    
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSF-TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 829 FG-----NLKEIESLDLSMNNLSGK----IPAQLASLNFLSVLNLSYNNL 869
                      +  L L+  ++S      + A L + + L  L+LS N L
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 46/277 (16%), Positives = 81/277 (29%), Gaps = 63/277 (22%)

Query: 617 SSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLA----NCNMLQVL 672
           S  ++ L++    L+      + P     Q++ L    L     K ++        L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 673 DLRSNYISDN-----FPCWLRNASSLQVLVLRSNNFSGH---------ISCPRNKVSWPL 718
           +LRSN + D             +  +Q L L++   +G           + P        
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT------- 114

Query: 719 LQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEI 778
           LQ + L+ N     L    L  +          +  L +E             +    E 
Sbjct: 115 LQELHLSDNL----LGDAGLQLLCEGLLDPQCRLEKLQLE--YCSL-------SAASCEP 161

Query: 779 --KLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIE 836
              +L+    F  +  S+N+                        L   +  S   L   E
Sbjct: 162 LASVLRAKPDFKELTVSNNDIN----------------EAGVRVLCQGLKDSPCQL---E 202

Query: 837 SLDLSMNNLSGK----IPAQLASLNFLSVLNLSYNNL 869
           +L L    ++      +   +AS   L  L L  N L
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.7 bits (233), Expect = 3e-20
 Identities = 57/285 (20%), Positives = 100/285 (35%), Gaps = 43/285 (15%)

Query: 421 LDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDI 480
           +      L   VP  I     N   L+L  N+   +K+ S         K+   L +L +
Sbjct: 48  VICVRKNLRE-VPDGIS---TNTRLLNLHENQIQIIKVNS--------FKHLRHLEILQL 95

Query: 481 SDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEP--YSISGIRFLDLHSNQLRGNIP 538
           S N I           G  NL  L L  N + ++       +S ++ L L +N +     
Sbjct: 96  SRNHIRTIEIGAFN--GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI----- 148

Query: 539 YMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLD 598
                            SIP+   N +        +     L+ +   +    +N + L+
Sbjct: 149 ----------------ESIPSYAFNRIPSLRRLD-LGELKRLSYISEGAFEGLSNLRYLN 191

Query: 599 LSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGV 658
           L+  NL   IP          L+ L+L  N+L+  +    F G   LQ L +  +Q+Q +
Sbjct: 192 LAMCNLR-EIPNL---TPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVI 246

Query: 659 VPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNF 703
              +  N   L  ++L  N ++            L+ + L  N +
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.4 bits (222), Expect = 9e-19
 Identities = 68/323 (21%), Positives = 116/323 (35%), Gaps = 57/323 (17%)

Query: 368 NLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNR 427
               V+    +L   +P  +    N  +L L  NQ +  +   S      L  L LS N 
Sbjct: 44  QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNH 99

Query: 428 LEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISG 487
           +   + I  F  L NL TL+L  N+ + +        A       S+L  L + +N I  
Sbjct: 100 IRT-IEIGAFNGLANLNTLELFDNRLTTIP-----NGA---FVYLSKLKELWLRNNPIE- 149

Query: 488 EVPNWIWEVGSGNLKFLNLSH-NLVVSLQEP--YSISGIRFLDLHSNQLRGNIPYMS--P 542
            +P++ +     +L+ L+L     +  + E     +S +R+L+L    LR  IP ++   
Sbjct: 150 SIPSYAFN-RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLI 207

Query: 543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNN 602
               +D S N+ ++I                     S  G+         + Q L +  +
Sbjct: 208 KLDELDLSGNHLSAIRP------------------GSFQGL--------MHLQKLWMIQS 241

Query: 603 NLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKS 662
            +   I         S L  +NL  NNL   L   +F     L+ + L  N         
Sbjct: 242 QIQ-VIERNAFDNLQS-LVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNC----- 293

Query: 663 LANCNMLQVLDLRSNYISDNFPC 685
             NC++L +     +    N  C
Sbjct: 294 --NCDILWLSWWIKDMAPSNTAC 314

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 88.7 bits (220), Expect = 1e-18
 Identities = 49/235 (20%), Positives = 99/235 (42%), Gaps = 37/235 (15%)

Query: 341 SRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQLS 399
           S N   L+L  N +     ++F + L +L+I+ L  N +  +I    F  L NL  L+L 
Sbjct: 63  STNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELF 120

Query: 400 NNQFENQLPEISNVSSSVLFD------LDLSGNRLEGPVPISIFFELRNLYTLDLSS-NK 452
           +N+       ++ + +           L L  N +E  +P   F  + +L  LDL    +
Sbjct: 121 DNR-------LTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKR 172

Query: 453 FSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVV 512
            S +   +         +  S L  L+++   +  E+PN         L  L+LS N + 
Sbjct: 173 LSYISEGA--------FEGLSNLRYLNLAMCNLR-EIPNL---TPLIKLDELDLSGNHLS 220

Query: 513 SLQEP--YSISGIRFLDLHSNQLRGNIPYMS----PNTSYVDYSNNNFTSIPADI 561
           +++      +  ++ L +  +Q++  I   +     +   ++ ++NN T +P D+
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDL 274

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.7 bits (202), Expect = 3e-16
 Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 23/238 (9%)

Query: 175 PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNY--GLSSGTEFLAHLTNLKALDLSE 232
            N ++L+L    +     +     R L +++L  N+   +  G      L NL  L+L +
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA--FNGLANLNTLELFD 121

Query: 233 CGLQGKFPEKILHVPTLETLDLSINQLLQGSLPN--FPKNSSLRDLILSHTGLSGTLPDS 290
             L        +++  L+ L L  N +   S+P+  F +  SLR L L        + + 
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPI--ESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 291 I-GNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKS-----RNL 344
               L NL  + ++ CN      P++  L +L  +D S N     + ++         +L
Sbjct: 180 AFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGN----HLSAIRPGSFQGLMHL 233

Query: 345 NNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLF-LLPNLEMLQLSNN 401
             L +  + +     + F + L +L  + L HN+L+  +P  LF  L +LE + L +N
Sbjct: 234 QKLWMIQSQIQVIERNAF-DNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.2 bits (198), Expect = 8e-16
 Identities = 58/330 (17%), Positives = 103/330 (31%), Gaps = 79/330 (23%)

Query: 541 SPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLS 600
           S   S V     N   +P  I                         +       ++L+L 
Sbjct: 42  SNQFSKVICVRKNLREVPDGI-----------------------STNT------RLLNLH 72

Query: 601 NNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP 660
            N +   I           LE+L L RN++  T+    F G   L  L+L  N+L  +  
Sbjct: 73  ENQIQ-IIKVNSFKHLRH-LEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPN 129

Query: 661 KSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQ 720
            +    + L+ L LR+N I            SL+ L L                     +
Sbjct: 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-----------------R 172

Query: 721 IVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKL 780
           +  ++   F G  + ++L               +L          E+            L
Sbjct: 173 LSYISEGAFEGLSNLRYL---------------NLA----MCNLREIP----------NL 203

Query: 781 LKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDL 840
             +  +   +D S N+     P        L  L M  + +     ++F NL+ +  ++L
Sbjct: 204 TPLIKL-DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262

Query: 841 SMNNLSGKIPAQLASLNFLSVLNLSYNNLV 870
           + NNL+         L+ L  ++L +N   
Sbjct: 263 AHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.9 bits (174), Expect = 7e-13
 Identities = 59/274 (21%), Positives = 103/274 (37%), Gaps = 63/274 (22%)

Query: 69  LQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQ--------GGFAGEIPTEISSLTRLVT 120
            + LNL     +  +  +   +L +L  L LS+        G F G        L  L T
Sbjct: 66  TRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNHIRTIEIGAFNG--------LANLNT 116

Query: 121 LDLSG--IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQ 178
           L+L    +  I           +     L++L EL L    + +  +    A + +P+L+
Sbjct: 117 LELFDNRLTTIP----------NGAFVYLSKLKELWLRNNPIESIPSY---AFNRIPSLR 163

Query: 179 VLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGK 238
            L L                  LS I        S G      L+NL+ L+L+ C L+ +
Sbjct: 164 RLDLGEL------KR-------LSYI--------SEGA--FEGLSNLRYLNLAMCNLR-E 199

Query: 239 FPEKILHVPTLETLDLSINQLLQGSLPN--FPKNSSLRDLILSHTGLSGTLPDSIGNLEN 296
            P  +  +  L+ LDLS N L   ++    F     L+ L +  + +     ++  NL++
Sbjct: 200 IPN-LTPLIKLDELDLSGNHL--SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256

Query: 297 LTRVEVSSCNFTGPIPPSM-ANLTQLFHMDFSSN 329
           L  + ++  N T  +P  +   L  L  +    N
Sbjct: 257 LVEINLAHNNLTL-LPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 40/208 (19%), Positives = 73/208 (35%), Gaps = 14/208 (6%)

Query: 526 LDLHSNQLRGNIP-YMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVI 584
           +      LR  +P  +S NT  ++   N    I  +    +   E      + N +  + 
Sbjct: 48  VICVRKNLR-EVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQL--SRNHIRTIE 104

Query: 585 PESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCG 644
             +     N   L+L +N L+ TIP       S  L+ L L  N +  ++    F     
Sbjct: 105 IGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSK-LKELWLRNNPIE-SIPSYAFNRIPS 161

Query: 645 LQILDLSG-NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNF 703
           L+ LDL    +L  +   +    + L+ L+L    + +     L     L  L L  N+ 
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHL 219

Query: 704 SGHISCPRNK-VSWPLLQIVDLACNKFS 730
           S   +           LQ + +  ++  
Sbjct: 220 S---AIRPGSFQGLMHLQKLWMIQSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 50/239 (20%), Positives = 79/239 (33%), Gaps = 64/239 (26%)

Query: 640 PGDC----GLQILDLSGNQLQGVVPKSL-ANCNMLQVLDLRSNYISDNFPCWLRNASSLQ 694
           P  C        +      L+  VP  +  N    ++L+L  N I        ++   L+
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR-EVPDGISTN---TRLLNLHENQIQIIKVNSFKHLRHLE 91

Query: 695 VLVLRSNNFSGHISCPRNKVSWPL--LQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEV 752
           +L L  N    HI          L  L  ++L  N+ +                      
Sbjct: 92  ILQLSRN----HIRTIEIGAFNGLANLNTLELFDNRLT---------------------- 125

Query: 753 NHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEM-GRFRSL 811
                 +P+  F  +           KL         +   +N  E  IP     R  SL
Sbjct: 126 -----TIPNGAFVYLS----------KL-------KELWLRNNPIES-IPSYAFNRIPSL 162

Query: 812 YALNMSH-NALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
             L++     L+     +F  L  +  L+L+M NL  +IP  L  L  L  L+LS N+L
Sbjct: 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHL 219

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 23/147 (15%)

Query: 46  LDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFA 105
           LDL     +  +        L  L+ LNL     +  +IP+ L  L  L  L+LS    +
Sbjct: 165 LDLGELKRLSYISEGA-FEGLSNLRYLNLAMCNLR--EIPN-LTPLIKLDELDLSGNHLS 220

Query: 106 GEIPTEISSLTRLVTLDLSG--IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSAS 163
              P     L  L  L +    I  IE               NL  L E++L   +L+  
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQVIE----------RNAFDNLQSLVEINLAHNNLTLL 270

Query: 164 GTEWCKALSFLPNLQVLSLSG----CD 186
             +     + L +L+ + L      C+
Sbjct: 271 PHD---LFTPLHHLERIHLHHNPWNCN 294

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 55/289 (19%), Positives = 111/289 (38%), Gaps = 32/289 (11%)

Query: 277 ILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP 336
           I   T ++   PD    L N  ++     N T  +    A+L  +  +          I 
Sbjct: 3   ITQPTAINVIFPDP--ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE 57

Query: 337 SLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEML 396
            +    NL  L+L  N ++        + L  +  + L  N L  ++  ++  L +++ L
Sbjct: 58  GVQYLNNLIGLELKDNQIT---DLAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTL 112

Query: 397 QLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRL 456
            L++ Q  + +  ++ +S+  L  L L  N++     IS    L NL  L + + + S  
Sbjct: 113 DLTSTQITD-VTPLAGLSN--LQVLYLDLNQITN---ISPLAGLTNLQYLSIGNAQVSD- 165

Query: 457 KLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQE 516
                    +  L N S+L+ L   DN+IS ++          NL  ++L +N +  +  
Sbjct: 166 ---------LTPLANLSKLTTLKADDNKIS-DISPLA---SLPNLIEVHLKNNQISDVSP 212

Query: 517 PYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSI--PADIGN 563
             + S +  + L +  +     + + N    +       +   PA I +
Sbjct: 213 LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 87.1 bits (216), Expect = 1e-18
 Identities = 55/315 (17%), Positives = 113/315 (35%), Gaps = 54/315 (17%)

Query: 202 SVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQ 261
           + I++       + T   A L  +  L     G+     E + ++  L  L+L  NQ+  
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQI-- 75

Query: 262 GSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQL 321
             L      + + +L LS   L      ++  +  L                   ++  L
Sbjct: 76  TDLAPLKNLTKITELELSGNPLK-----NVSAIAGLQ------------------SIKTL 112

Query: 322 FHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG 381
              D +S      +  L    NL  L L  N ++   + +    L NLQ + +G+  +S 
Sbjct: 113 ---DLTSTQITD-VTPLAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSD 165

Query: 382 SIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELR 441
             P  L  L  L  L+  +N+  + +  ++++ +  L ++ L  N++     +S      
Sbjct: 166 LTP--LANLSKLTTLKADDNKISD-ISPLASLPN--LIEVHLKNNQISD---VSPLANTS 217

Query: 442 NLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNL 501
           NL+ + L++   +            P+  N + +    +     +   P  I +  +G  
Sbjct: 218 NLFIVTLTNQTIT----------NQPVFYNNNLVVPNVVKGPSGAPIAPATISD--NGTY 265

Query: 502 KFLNLSHNLVVSLQE 516
              NL+ NL   +  
Sbjct: 266 ASPNLTWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.5 bits (186), Expect = 7e-15
 Identities = 57/329 (17%), Positives = 107/329 (32%), Gaps = 66/329 (20%)

Query: 405 NQLPEISNVSS-SVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKP 463
             +  I    + +    +    + +   V  +   +L  + TL       +         
Sbjct: 7   TAINVIFPDPALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTT-------- 55

Query: 464 RAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGI 523
             I  ++  + L  L++ DNQI+   P          +  L LS N + ++     +  I
Sbjct: 56  --IEGVQYLNNLIGLELKDNQITDLAPL----KNLTKITELELSGNPLKNVSAIAGLQSI 109

Query: 524 RFLDLHSNQLRGNIPYMS--PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLA 581
           + LDL S Q+  ++  ++   N   +    N  T+I                        
Sbjct: 110 KTLDLTSTQIT-DVTPLAGLSNLQVLYLDLNQITNI------------------------ 144

Query: 582 GVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPG 641
                 +   TN Q L + N  +S   P      + S L  L    N +    SD     
Sbjct: 145 ----SPLAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKADDNKI----SDISPLA 192

Query: 642 DC-GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRS 700
               L  + L  NQ+  V    LAN + L ++ L +  I++    +  N     V+   S
Sbjct: 193 SLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPS 250

Query: 701 NN------FSGHISCPRNKVSWPLLQIVD 723
                    S + +     ++W L   ++
Sbjct: 251 GAPIAPATISDNGTYASPNLTWNLTSFIN 279

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 54/327 (16%), Positives = 108/327 (33%), Gaps = 56/327 (17%)

Query: 112 ISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKAL 171
             +L   + +               + +      +L  +T L      ++       + +
Sbjct: 15  DPALANAIKIAAGKSN---------VTDTV-TQADLDGITTLSAFGTGVTT-----IEGV 59

Query: 172 SFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLS 231
            +L NL  L L    ++                              L +LT +  L+LS
Sbjct: 60  QYLNNLIGLELKDNQITDL--------------------------APLKNLTKITELELS 93

Query: 232 ECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSI 291
              L+       L   +++TLDL+  Q+    +      S+L+ L L    ++      +
Sbjct: 94  GNPLKNVSAIAGL--QSIKTLDLTSTQI--TDVTPLAGLSNLQVLYLDLNQITNI--SPL 147

Query: 292 GNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSF 351
             L NL  + + +   +  + P +ANL++L  +    N     I  L    NL  + L  
Sbjct: 148 AGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKN 204

Query: 352 NNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIS 411
           N +S     +      NL IV L + +++      +F   NL +  +        +   +
Sbjct: 205 NQIS---DVSPLANTSNLFIVTLTNQTITNQ---PVFYNNNLVVPNVVKGPSGAPIAPAT 258

Query: 412 NVSSSVLFDLDLSGNRLEGPVPISIFF 438
              +      +L+ N       +S  F
Sbjct: 259 ISDNGTYASPNLTWNLTSFINNVSYTF 285

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 64/309 (20%), Positives = 115/309 (37%), Gaps = 37/309 (11%)

Query: 61  TGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVT 120
                L     +  G +            +L  +T L+    G    I   +  L  L+ 
Sbjct: 13  FPDPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIG 67

Query: 121 LDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVL 180
           L+L             I +L+  L+NLT++TEL L    L         A++ L +++ L
Sbjct: 68  LELKDN---------QITDLA-PLKNLTKITELELSGNPLKNV-----SAIAGLQSIKTL 112

Query: 181 SLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFP 240
            L+   ++      LA   +L V+ L  N  +++    LA LTNL+ L +    +     
Sbjct: 113 DLTSTQITDVTP--LAGLSNLQVLYLDLN-QITN-ISPLAGLTNLQYLSIGNAQVSD--L 166

Query: 241 EKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRV 300
             + ++  L TL    N++    +       +L ++ L +  +S   P  + N  NL  V
Sbjct: 167 TPLANLSKLTTLKADDNKIS--DISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222

Query: 301 EVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLN--NLDLSFNNLS--G 356
            +++   T        NL      +        PI     S N    + +L++N  S   
Sbjct: 223 TLTNQTITNQPVFYNNNLVVP---NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFIN 279

Query: 357 GISSTFWEQ 365
            +S TF + 
Sbjct: 280 NVSYTFNQS 288

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 55/251 (21%), Positives = 94/251 (37%), Gaps = 34/251 (13%)

Query: 56  GLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSL 115
           G+    G+  L  L  L L           + L NLT +T L LS      +  + I+ L
Sbjct: 52  GVTTIEGVQYLNNLIGLELKDNQITDL---APLKNLTKITELELSGNPL--KNVSAIAGL 106

Query: 116 TRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDR---VDLSASGTEWCKALS 172
             + TLDL+            I +++  L  L+ L  L+LD     ++S         L+
Sbjct: 107 QSIKTLDLTSTQ---------ITDVT-PLAGLSNLQVLYLDLNQITNIS--------PLA 148

Query: 173 FLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSE 232
            L NLQ LS+    +S      LA    L+ ++   N    S    LA L NL  + L  
Sbjct: 149 GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK--ISDISPLASLPNLIEVHLKN 204

Query: 233 CGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIG 292
             +    P  + +   L  + L+   +   + P F  N+ +   ++     +   P +I 
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTNQTIT--NQPVFYNNNLVVPNVVKGPSGAPIAPATIS 260

Query: 293 NLENLTRVEVS 303
           +        ++
Sbjct: 261 DNGTYASPNLT 271

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 43/286 (15%), Positives = 95/286 (33%), Gaps = 46/286 (16%)

Query: 592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLS 651
            N   +    +N++ T+    +      +  L+     +    +         L  L+L 
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADLDG----ITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 652 GNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPR 711
            NQ+  + P  L N   +  L+L  N + +     +    S++ L L S      I+   
Sbjct: 72  DNQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTST----QITDVT 123

Query: 712 NKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTV 771
                  LQ++ L  N+ +            ++     + + +L I   + Q        
Sbjct: 124 PLAGLSNLQVLYLDLNQIT-----------NISPLAGLTNLQYLSIG--NAQ-------- 162

Query: 772 TVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGN 831
            V  +   L  +  + T++    N      P+      +L  +++ +N ++    S   N
Sbjct: 163 -VSDLT-PLANLSKL-TTLKADDNKISDISPLA--SLPNLIEVHLKNNQISDV--SPLAN 215

Query: 832 LKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTST 877
              +  + L+   ++ +        N L V N+        I  +T
Sbjct: 216 TSNLFIVTLTNQTITNQPV---FYNNNLVVPNVVKGPSGAPIAPAT 258

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 91.7 bits (227), Expect = 3e-19
 Identities = 55/286 (19%), Positives = 96/286 (33%), Gaps = 52/286 (18%)

Query: 273 LRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFF 332
           + + I   T +    PD         +  +   + T  +      L  +  +  +++   
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI- 55

Query: 333 GPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPN 392
             +  +    N+  L L+ N L+          L NL  + L  N +   +  SL  L  
Sbjct: 56  KSVQGIQYLPNVTKLFLNGNKLT---DIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKK 110

Query: 393 LEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNK 452
           L+ L L +N        IS+++                         L  L +L L +NK
Sbjct: 111 LKSLSLEHNG-------ISDING---------------------LVHLPQLESLYLGNNK 142

Query: 453 FSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVV 512
            +           I +L   ++L  L + DNQIS  VP      G   L+ L LS N + 
Sbjct: 143 ITD----------ITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHIS 188

Query: 513 SLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIP 558
            L+    +  +  L+L S +          N    +   N   S+ 
Sbjct: 189 DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.9 bits (199), Expect = 8e-16
 Identities = 50/271 (18%), Positives = 94/271 (34%), Gaps = 34/271 (12%)

Query: 88  LGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNL 147
                     NL +      +    + L  +  +  +            I ++   +Q L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANN---------SDIKSVQ-GIQYL 64

Query: 148 TELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGC---DLSGPINHYLAKSRSLSVI 204
             +T+L L+   L+       K L+ L NL  L L      DLS      L   + L  +
Sbjct: 65  PNVTKLFLNGNKLTD-----IKPLTNLKNLGWLFLDENKIKDLSS-----LKDLKKLKSL 114

Query: 205 RLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSL 264
            L +N G+S     L HL  L++L L    +       +  +  L+TL L  NQ+    +
Sbjct: 115 SLEHN-GISD-INGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI--SDI 168

Query: 265 PNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHM 324
                 + L++L LS   +S     ++  L+NL  +E+ S           +NL     +
Sbjct: 169 VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 325 DFSSNHFFGPIPSLHKSRNLNNLDLSFNNLS 355
             +          +    +    ++ ++   
Sbjct: 227 KNTDGSLV-TPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.9 bits (186), Expect = 3e-14
 Identities = 44/303 (14%), Positives = 89/303 (29%), Gaps = 82/303 (27%)

Query: 405 NQLPEISNVSS-SVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKP 463
             + +I    + +     +L    +   V  +   EL ++  +  +++            
Sbjct: 9   TPIKQIFPDDAFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKS-------- 57

Query: 464 RAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGS-GNLKFLNLSHNLVVSLQEPYSISG 522
             +  ++    ++ L ++ N+++      I  + +  NL +L L  N +  L     +  
Sbjct: 58  --VQGIQYLPNVTKLFLNGNKLTD-----IKPLTNLKNLGWLFLDENKIKDLSSLKDLKK 110

Query: 523 IRFLDLHSNQLRGNIPYMS--PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSL 580
           ++ L L  N +  +I  +   P    +   NN  T I                       
Sbjct: 111 LKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDI----------------------- 146

Query: 581 AGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFP 640
                  + + T    L L +N +S  I         + L+ L L +N            
Sbjct: 147 -----TVLSRLTKLDTLSLEDNQIS-DIVPL---AGLTKLQNLYLSKN------------ 185

Query: 641 GDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRS 700
                 I DL            LA    L VL+L S    +       N      +    
Sbjct: 186 -----HISDLRA----------LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 701 NNF 703
            + 
Sbjct: 231 GSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.8 bits (170), Expect = 2e-12
 Identities = 54/261 (20%), Positives = 85/261 (32%), Gaps = 49/261 (18%)

Query: 7   LSNDSGFPSTKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDL 66
           +  D  F  T          +D      V  +E   +  +  +   I    ++  G+  L
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTDA-----VTQNELNSIDQIIANNSDI----KSVQGIQYL 64

Query: 67  QYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSG- 125
             +  L L             L NL NL +L L +     ++ + +  L +L +L L   
Sbjct: 65  PNVTKLFLNGNKLTDI---KPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHN 119

Query: 126 -IVPIEYSYTVWIANLSLFLQNLTELTELHLDR---VDLSASGTEWCKALSFLPNLQVLS 181
            I  I              L +L +L  L+L      D++         LS L  L  LS
Sbjct: 120 GISDIN------------GLVHLPQLESLYLGNNKITDITV--------LSRLTKLDTLS 159

Query: 182 LSGC---DLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGK 238
           L      D+       LA    L  + L  N  +S     LA L NL  L+L       K
Sbjct: 160 LEDNQISDIVP-----LAGLTKLQNLYLSKN-HISD-LRALAGLKNLDVLELFSQECLNK 212

Query: 239 FPEKILHVPTLETLDLSINQL 259
                 ++    T+  +   L
Sbjct: 213 PINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.0 bits (137), Expect = 2e-08
 Identities = 46/305 (15%), Positives = 96/305 (31%), Gaps = 71/305 (23%)

Query: 574 VAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGT 633
           +  +  +  + P+           +L   +++  +    +      ++ +    +++   
Sbjct: 5   ITVSTPIKQIFPDDAFA--ETIKDNLKKKSVTDAVTQNELNS----IDQIIANNSDIK-- 56

Query: 634 LSDTIFPGDC--GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNAS 691
              ++        +  L L+GN+L  + P  L N   L  L L  N I D     L++  
Sbjct: 57  ---SVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLK 109

Query: 692 SLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSE 751
            L+ L L  N     IS     V  P L+ + L  NK                       
Sbjct: 110 KLKSLSLEHNG----ISDINGLVHLPQLESLYLGNNK----------------------- 142

Query: 752 VNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSL 811
                I   +                  L ++  +  ++    N     +P+       L
Sbjct: 143 -----ITDITV-----------------LSRLTKL-DTLSLEDNQISDIVPLA--GLTKL 177

Query: 812 YALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 871
             L +S N ++  +  +   LK ++ L+L       K     ++L   + +  +  +LV 
Sbjct: 178 QNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235

Query: 872 KIPTS 876
               S
Sbjct: 236 PEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.4 bits (99), Expect = 8e-04
 Identities = 33/227 (14%), Positives = 74/227 (32%), Gaps = 42/227 (18%)

Query: 645 LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS 704
           +         ++ + P            +L+   ++D         +S+  ++  +++  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 705 --GHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSN 762
               I    N      +  + L  NK +  +     L  +              + +  N
Sbjct: 57  SVQGIQYLPN------VTKLFLNGNKLT-DIKPLTNLKNLGW------------LFLDEN 97

Query: 763 QFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALT 822
           +         +K +   L  +  +  S+    N       +       L +L + +N +T
Sbjct: 98  K---------IKDLS-SLKDLKKL-KSLSLEHNGISDINGLVH--LPQLESLYLGNNKIT 144

Query: 823 GSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
               +    L ++++L L  N +S  I   LA L  L  L LS N++
Sbjct: 145 --DITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHI 187

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 58/320 (18%), Positives = 101/320 (31%), Gaps = 70/320 (21%)

Query: 92  TNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSG--IVPIEYSYTVWIANLSLFLQNLTE 149
             +  L+LS         +++     L  L L+   I  IE               +L  
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE----------EDSFSSLGS 101

Query: 150 LTELHLDR---VDLSASGTEWCKALSFLPNLQVLSLSGCDLSG-PINHYLAKSRSLSVIR 205
           L  L L      +LS+S          L +L  L+L G            +    L ++R
Sbjct: 102 LEHLDLSYNYLSNLSSS------WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155

Query: 206 LHYNYGLSS-GTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSL 264
           +      +    +  A LT L+ L++    LQ   P+ +  +  +  L L + Q     L
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH--ILL 213

Query: 265 PN--FPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLF 322
                   SS+  L L  T L                                 + ++L 
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTF------------------------------HFSELS 243

Query: 323 HMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGS 382
             + +         SL K     N+ ++  +L   +      Q+  L  +    N L  S
Sbjct: 244 TGETN---------SLIKKFTFRNVKITDESLFQVMKLLN--QISGLLELEFSRNQLK-S 291

Query: 383 IPRSLF-LLPNLEMLQLSNN 401
           +P  +F  L +L+ + L  N
Sbjct: 292 VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.2 bits (206), Expect = 4e-17
 Identities = 46/268 (17%), Positives = 90/268 (33%), Gaps = 27/268 (10%)

Query: 338 LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEML 396
           L +  NL  L L+ N ++     +F   L +L+ + L +N LS ++  S F  L +L  L
Sbjct: 72  LQRCVNLQALVLTSNGINTIEEDSF-SSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFL 129

Query: 397 QLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRL 456
            L  N ++           + L  L +        +    F  L  L  L++ ++     
Sbjct: 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189

Query: 457 KLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQE 516
           +  S        LK+   +S L +   Q    +     +  + +++ L L    + +   
Sbjct: 190 EPKS--------LKSIQNVSHLILHMKQHI-LLLEIFVD-VTSSVECLELRDTDLDTFHF 239

Query: 517 PYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAA 576
              +S      L                  V  ++ +   +   +   +S      F  +
Sbjct: 240 S-ELSTGETNSLIK----------KFTFRNVKITDESLFQVMKLLNQ-ISGLLELEF--S 285

Query: 577 NNSLAGVIPESVCKATNFQVLDLSNNNL 604
            N L  V      + T+ Q + L  N  
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.2 bits (206), Expect = 4e-17
 Identities = 68/344 (19%), Positives = 115/344 (33%), Gaps = 94/344 (27%)

Query: 343 NLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQLSNN 401
            + +LDLS N ++  IS++  ++ +NLQ +VL  N ++ +I    F  L +LE L LS N
Sbjct: 53  AVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 402 QFENQLPEISNVSSSV------LFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSR 455
                   +SN+SSS       L  L+L GN  +     S+F  L  L  L + +     
Sbjct: 111 Y-------LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD--- 160

Query: 456 LKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQ 515
                 + +        + L  L+I  + +    P  +      N+  L L     + L 
Sbjct: 161 -TFTKIQRKD---FAGLTFLEELEIDASDLQSYEPKSLK--SIQNVSHLILHMKQHILLL 214

Query: 516 E--PYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYF 573
           E      S +  L+L    L                   +F+ +     N          
Sbjct: 215 EIFVDVTSSVECLELRDTDL----------------DTFHFSELSTGETN---------- 248

Query: 574 VAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGT 633
                        S+ K   F+ + +++ +L   +                         
Sbjct: 249 -------------SLIKKFTFRNVKITDESLFQVMKL----------------------- 272

Query: 634 LSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSN 677
                     GL  L+ S NQL+ V          LQ + L +N
Sbjct: 273 -----LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 57/326 (17%), Positives = 99/326 (30%), Gaps = 52/326 (15%)

Query: 525 FLDLHSNQLR---GNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLA 581
                S  L      +         +D SNN  T I           +       +N + 
Sbjct: 35  ICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVL--TSNGIN 89

Query: 582 GVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPG 641
            +  +S     + + LDLS N LS  + +      SS L  LNL  N        ++F  
Sbjct: 90  TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSS-LTFLNLLGNPYKTLGETSLFSH 147

Query: 642 DCGLQILDLSGN-QLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRS 700
              LQIL +        +  K  A    L+ L++ ++ +    P  L++  ++  L+L  
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 701 NNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMP 760
                              Q + L         S + L                   E+ 
Sbjct: 208 K------------------QHILLLEIFVDVTSSVECL-------------------ELR 230

Query: 761 SNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNA 820
                    +    G    L+K    F ++  +  +    +   + +   L  L  S N 
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFT-FRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ 288

Query: 821 LTGSIPSS-FGNLKEIESLDLSMNNL 845
           L  S+P   F  L  ++ + L  N  
Sbjct: 289 LK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.1 bits (172), Expect = 8e-13
 Identities = 54/333 (16%), Positives = 105/333 (31%), Gaps = 55/333 (16%)

Query: 542 PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSN 601
                   S+ +  SIP+ +                                 + LDLSN
Sbjct: 31  DRNGICKGSSGSLNSIPSGL-----------------------------TEAVKSLDLSN 61

Query: 602 NNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPK 661
           N ++  I    + +  + L+ L L  N +N T+ +  F     L+ LDLS N L  +   
Sbjct: 62  NRIT-YISNSDLQRCVN-LQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118

Query: 662 SLANCNMLQVLDLRSNYISDNFPC-WLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQ 720
                + L  L+L  N            + + LQ+L + + +    I   ++      L+
Sbjct: 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLE 177

Query: 721 IVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKL 780
            +++  +        K L ++          V+HL +     Q   +          ++ 
Sbjct: 178 ELEIDASDLQ-SYEPKSLKSI--------QNVSHLILH--MKQHILLLEIFVDVTSSVEC 226

Query: 781 LKVPNIFTSIDFSSNNFEGPIPVEMGRFR---SLYALNMSHNALTGSIPSSFGNLKEIES 837
           L         D  + +F      E        +   + ++  +L   +      +  +  
Sbjct: 227 L----ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLE 281

Query: 838 LDLSMNNLSGKIPAQ-LASLNFLSVLNLSYNNL 869
           L+ S N L   +P      L  L  + L  N  
Sbjct: 282 LEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.8 bits (171), Expect = 9e-13
 Identities = 36/189 (19%), Positives = 73/189 (38%), Gaps = 8/189 (4%)

Query: 521 SGIRFLDLHSNQLRGNIPYMS----PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAA 576
             ++ LDL +N++   I         N   +  ++N   +I  D  + +   E+     +
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL--S 108

Query: 577 NNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSD 636
            N L+ +        ++   L+L  N    T+    +    + L++L +G  +    +  
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 637 TIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVL 696
             F G   L+ L++  + LQ   PKSL +   +  L L           ++   SS++ L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 697 VLRSNNFSG 705
            LR  +   
Sbjct: 228 ELRDTDLDT 236

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.8 bits (166), Expect = 4e-12
 Identities = 49/299 (16%), Positives = 107/299 (35%), Gaps = 35/299 (11%)

Query: 579 SLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTI 638
           S      ++        +   S+ +L+ +IP+ L    +  ++ L+L  N +   +S++ 
Sbjct: 18  SKEESSNQASLSCDRNGICKGSSGSLN-SIPSGL----TEAVKSLDLSNNRIT-YISNSD 71

Query: 639 FPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL 698
                 LQ L L+ N +  +   S ++   L+ LDL  NY+S+    W +  SSL  L L
Sbjct: 72  LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131

Query: 699 RSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIE 758
             N +   +           LQI+ +       ++ +K    +        + +  L I+
Sbjct: 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL--------TFLEELEID 182

Query: 759 MPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSH 818
             ++                 L  + N+ + +          + + +    S+  L +  
Sbjct: 183 --ASDLQSYEPKS--------LKSIQNV-SHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 819 NALTG----SIPS----SFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
             L       + +    S        ++ ++  +L  ++   L  ++ L  L  S N L
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.4 bits (131), Expect = 9e-08
 Identities = 48/266 (18%), Positives = 87/266 (32%), Gaps = 46/266 (17%)

Query: 644 GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNF 703
            ++ LDLS N++  +    L  C  LQ L L SN I+        +  SL+ L L  N  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-- 110

Query: 704 SGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQ 763
                            + +L+ + F   LS    L +           N       ++ 
Sbjct: 111 ----------------YLSNLSSSWFKP-LSSLTFLNL---------LGNPYKTLGETSL 144

Query: 764 FYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTG 823
           F  +      K   +++  +    T I     +F G           L  L +  + L  
Sbjct: 145 FSHLT-----KLQILRVGNMDTF-TKI--QRKDFAGL--------TFLEELEIDASDLQS 188

Query: 824 SIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFS 883
             P S  +++ +  L L M      +   +   + +  L L   +L       ++L +  
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT--FHFSELSTGE 246

Query: 884 PTSYEGNKGLYGPPLTNESQARPPEL 909
             S           +T+ES  +  +L
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQVMKL 272

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 38/209 (18%), Positives = 71/209 (33%), Gaps = 28/209 (13%)

Query: 62  GLFD-LQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEI-SSLTRLV 119
             F  L  L  LNL    +K     S   +LT L  L +       +I  +  + LT L 
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177

Query: 120 TLDLSG--IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNL 177
            L++    +   E             L+++  ++ L L               +    ++
Sbjct: 178 ELEIDASDLQSYEPKS----------LKSIQNVSHLILHMKQHILLLEI---FVDVTSSV 224

Query: 178 QVLSLSGCDLSGP--------INHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALD 229
           + L L   DL             + L K  +   +++     L    + L  ++ L  L+
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE-SLFQVMKLLNQISGLLELE 283

Query: 230 LSECGLQGKFPEKILH-VPTLETLDLSIN 257
            S   L+   P+ I   + +L+ + L  N
Sbjct: 284 FSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 46/218 (21%), Positives = 76/218 (34%), Gaps = 27/218 (12%)

Query: 247 PTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCN 306
              + + L  N++      +F    +L  L L    L+     +   L  L ++++S   
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 307 FTGPIPPSM-ANLTQLFHMDFSSNHFFGPIPSLHKS-----RNLNNLDLSFNNLSGGISS 360
               + P+    L +L  +          +  L          L  L L  N L   +  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCG----LQELGPGLFRGLAALQYLYLQDNALQA-LPD 146

Query: 361 TFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQLSNNQFENQLPEISNVSSSV-- 417
             +  L NL  + L  N +S S+P   F  L +L+ L L  N+       +++V      
Sbjct: 147 DTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNR-------VAHVHPHAFR 198

Query: 418 ----LFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSN 451
               L  L L  N L   +P      LR L  L L+ N
Sbjct: 199 DLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 46/207 (22%), Positives = 80/207 (38%), Gaps = 32/207 (15%)

Query: 368 NLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQLSNNQFENQLPEISNVSSSV------LFD 420
             Q + L  N +S  +P + F    NL +L L +N        ++ + ++       L  
Sbjct: 33  ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNV-------LARIDAAAFTGLALLEQ 84

Query: 421 LDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDI 480
           LDLS N     V  + F  L  L+TL L       L      P      +  + L  L +
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-----GPGL---FRGLAALQYLYL 136

Query: 481 SDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEP--YSISGIRFLDLHSNQLRGNIP 538
            DN +   +P+  +    GNL  L L  N + S+ E     +  +  L LH N++  ++ 
Sbjct: 137 QDNALQ-ALPDDTFR-DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVH 193

Query: 539 YMS----PNTSYVDYSNNNFTSIPADI 561
             +         +    NN +++P + 
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEA 220

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 53/287 (18%), Positives = 88/287 (30%), Gaps = 66/287 (22%)

Query: 372 VVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGP 431
                  L  ++P  +      + + L  N+  + +P  S  +   L  L L  N L   
Sbjct: 16  TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLAR- 70

Query: 432 VPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPN 491
           +  + F  L  L  LDLS N     +L S  P          +L  L +    +  E+  
Sbjct: 71  IDAAAFTGLALLEQLDLSDN----AQLRSVDPAT---FHGLGRLHTLHLDRCGLQ-ELGP 122

Query: 492 WIWEVGSGNLKFLNLSHNLVVSLQEP--YSISGIRFLDLHSNQLRGNIPYMSPNTSYVDY 549
            ++  G   L++L L  N + +L +     +  +  L LH N++                
Sbjct: 123 GLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI---------------- 165

Query: 550 SNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIP 609
                +S+P     F                            +   L L  N ++  + 
Sbjct: 166 -----SSVPE--RAFR------------------------GLHSLDRLLLHQNRVA-HVH 193

Query: 610 ACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQ 656
                     L  L L  NNL+  L          LQ L L+ N   
Sbjct: 194 PHAFRDLGR-LMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 49/212 (23%), Positives = 79/212 (37%), Gaps = 13/212 (6%)

Query: 521 SGIRFLDLHSNQLRGNIPYMS----PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAA 576
           +  + + LH N++  ++P  S     N + +   +N    I A     ++  E    ++ 
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD-LSD 89

Query: 577 NNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSD 636
           N  L  V P +         L L    L   +   L    ++ L+ L L  N L   L D
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAA-LQYLYLQDNALQ-ALPD 146

Query: 637 TIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVL 696
             F     L  L L GN++  V  ++    + L  L L  N ++   P   R+   L  L
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 697 VLRSNNFSGHISCPRNK-VSWPLLQIVDLACN 727
            L +NN S   + P         LQ + L  N
Sbjct: 207 YLFANNLS---ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.4 bits (186), Expect = 6e-15
 Identities = 51/215 (23%), Positives = 75/215 (34%), Gaps = 17/215 (7%)

Query: 198 SRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSIN 257
             +   I LH N              NL  L L    L          +  LE LDLS N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 258 QLLQGSLPN--FPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSM 315
             L+ S+    F     L  L L   GL    P     L  L  + +        +P   
Sbjct: 91  AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDT 148

Query: 316 -ANLTQLFHMDFSSNHFFGPIPSLHKS-----RNLNNLDLSFNNLSGGISSTFWEQLLNL 369
             +L  L H+    N     I S+ +       +L+ L L  N ++      F   L  L
Sbjct: 149 FRDLGNLTHLFLHGNR----ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRL 203

Query: 370 QIVVLGHNSLSGSIPRSLFL-LPNLEMLQLSNNQF 403
             + L  N+LS ++P      L  L+ L+L++N +
Sbjct: 204 MTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 37/158 (23%), Positives = 57/158 (36%), Gaps = 7/158 (4%)

Query: 547 VDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSG 606
                    ++P  I    + ++  +     N ++ V   S     N  +L L +N L+ 
Sbjct: 16  TSCPQQGLQAVPVGI---PAASQRIFL--HGNRISHVPAASFRACRNLTILWLHSNVLA- 69

Query: 607 TIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANC 666
            I A   T  +  LE L+L  N    ++    F G   L  L L    LQ + P      
Sbjct: 70  RIDAAAFTGLAL-LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128

Query: 667 NMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS 704
             LQ L L+ N +        R+  +L  L L  N  S
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 45/257 (17%), Positives = 77/257 (29%), Gaps = 56/257 (21%)

Query: 83  QIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSG--IVPIEYSYTVWIANL 140
            +P  +        + L     +        +   L  L L    +  I+          
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID---------- 72

Query: 141 SLFLQNLTELTELHLDR----VDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLA 196
           +     L  L +L L        +  +          L  L  L L  C L         
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPA------TFHGLGRLHTLHLDRCGLQ-------- 118

Query: 197 KSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKIL-HVPTLETLDLS 255
                          L  G      L  L+ L L +  LQ   P+     +  L  L L 
Sbjct: 119 --------------ELGPGL--FRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLH 161

Query: 256 INQLLQGSLPN--FPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPP 313
            N++   S+P   F    SL  L+L    ++   P +  +L  L  + + + N +  +P 
Sbjct: 162 GNRI--SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPT 218

Query: 314 S-MANLTQLFHMDFSSN 329
             +A L  L ++  + N
Sbjct: 219 EALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 808 FRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSY 866
             +   + +  N ++    +SF   + +  L L  N L+ +I A     L  L  L+LS 
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89

Query: 867 NNLVGKIPTST 877
           N  +  +  +T
Sbjct: 90  NAQLRSVDPAT 100

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 83.3 bits (205), Expect = 1e-16
 Identities = 47/251 (18%), Positives = 95/251 (37%), Gaps = 17/251 (6%)

Query: 230 LSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKN-SSLRDLILSHTGLSGTLP 288
           +        +         L   +LS+ +     L +  ++   L++L   +     T+ 
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKSTV--LQSELESCKELQELEPENKWCLLTII 389

Query: 289 DSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLD 348
             +  L+ L   + +   F+     ++  +   +  D  S           +  ++  L 
Sbjct: 390 LLMRALDPLLYEKETLQYFSTLK--AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLH 447

Query: 349 LSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLP 408
           L+  +L+        EQLL +  + L HN L  ++P +L  L  LE+LQ S+N  EN + 
Sbjct: 448 LAHKDLT---VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD 502

Query: 409 EISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPI 468
            ++N+    L +L L  NRL+    I        L  L+L  N   + +    +     +
Sbjct: 503 GVANLPR--LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER-----L 555

Query: 469 LKNQSQLSVLD 479
            +    +S + 
Sbjct: 556 AEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.2 bits (166), Expect = 6e-12
 Identities = 44/324 (13%), Positives = 100/324 (30%), Gaps = 23/324 (7%)

Query: 194 YLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLD 253
           ++++  +   +       + S    L  + +   L +      G+     + +  L    
Sbjct: 249 HVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAAS 308

Query: 254 LSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPP 313
           L+           +  + S ++ +L                E L R E+S    +  +  
Sbjct: 309 LNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELS-VEKSTVLQS 366

Query: 314 SMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVV 373
            + +  +L  ++    + +  +  +   R L+ L      L    +    +  +    + 
Sbjct: 367 ELESCKELQELE--PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLD 423

Query: 374 LGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVP 433
              +              ++ +L L++      L  +  +    +  LDLS NRL     
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCHLEQLLL--VTHLDLSHNRLRA--- 477

Query: 434 ISIFFE-LRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNW 492
           +      LR L  L  S N    +            + N  +L  L + +N++  +    
Sbjct: 478 LPPALAALRCLEVLQASDNALENV----------DGVANLPRLQELLLCNNRLQ-QSAAI 526

Query: 493 IWEVGSGNLKFLNLSHNLVVSLQE 516
              V    L  LNL  N +   + 
Sbjct: 527 QPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.5 bits (133), Expect = 6e-08
 Identities = 53/341 (15%), Positives = 96/341 (28%), Gaps = 36/341 (10%)

Query: 550 SNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIP 609
                 S+       +        +  + +   V   +         + L +   +    
Sbjct: 252 REEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLND 311

Query: 610 ACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCG----LQILDLSGNQLQGVVPKSLAN 665
                         +  +  +        +  D      L   +LS  +   V+   L +
Sbjct: 312 QLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELES 370

Query: 666 CNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLA 725
           C  LQ L+  + +        +R    L         FS              L+ VD  
Sbjct: 371 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST-------------LKAVD-- 415

Query: 726 CNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPN 785
               +  L       ++          +   + +             +  +E +LL V  
Sbjct: 416 -PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL------TVLCHLE-QLLLV-- 465

Query: 786 IFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNL 845
             T +D S N     +P  +   R L  L  S NAL  ++     NL  ++ L L  N L
Sbjct: 466 --THLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRL 520

Query: 846 SG-KIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 885
                   L S   L +LNL  N+L  +     +L    P+
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 1e-07
 Identities = 39/257 (15%), Positives = 78/257 (30%), Gaps = 12/257 (4%)

Query: 426 NRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQI 485
             L          +         S ++   + L               QL   ++S  + 
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKS 361

Query: 486 SGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTS 545
           +  + + +                L+  +    ++  + +                   +
Sbjct: 362 T-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420

Query: 546 YVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLS 605
           Y+D   + F    + +    ++    +   A+  L  +    + +      LDLS+N L 
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHL--AHKDLTVL--CHLEQLLLVTHLDLSHNRLR 476

Query: 606 GTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGV-VPKSLA 664
             +P  L       LEVL    N L   +          LQ L L  N+LQ     + L 
Sbjct: 477 -ALPPALAALRC--LEVLQASDNALE-NVDG--VANLPRLQELLLCNNRLQQSAAIQPLV 530

Query: 665 NCNMLQVLDLRSNYISD 681
           +C  L +L+L+ N +  
Sbjct: 531 SCPRLVLLNLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 1e-07
 Identities = 32/246 (13%), Positives = 74/246 (30%), Gaps = 24/246 (9%)

Query: 317 NLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGH 376
                       +              L   +LS    +  +  +  E    LQ +   +
Sbjct: 324 GSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST--VLQSELESCKELQELEPEN 381

Query: 377 NSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISI 436
                +I   +  L  L   + +   F      +  V       LD   ++      +  
Sbjct: 382 KWCLLTIILLMRALDPLLYEKETLQYFST----LKAVDPMRAAYLDDLRSKFLLENSVLK 437

Query: 437 FFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEV 496
                    L L+    +           +  L+    ++ LD+S N++   +P  +  +
Sbjct: 438 MEYADVRV-LHLAHKDLTV----------LCHLEQLLLVTHLDLSHNRLR-ALPPALAAL 485

Query: 497 GSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRG--NIPYMS--PNTSYVDYSNN 552
               L+ L  S N + ++    ++  ++ L L +N+L+    I  +   P    ++   N
Sbjct: 486 R--CLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

Query: 553 NFTSIP 558
           +     
Sbjct: 544 SLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.0 bits (129), Expect = 2e-07
 Identities = 42/278 (15%), Positives = 84/278 (30%), Gaps = 11/278 (3%)

Query: 596 VLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQL 655
           V                +     TL ++           +         + + DL    L
Sbjct: 250 VSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASL 309

Query: 656 QGVVPKSLANCNMLQVLDLR-SNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKV 714
              +P+             +    + D   CW R++++ + L       S   S      
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL--FRCELSVEKSTVLQSE 367

Query: 715 SWPLLQIVDLACNKFSGRLSQKWLL---TMMVAETKSGSEVNHLGIEMPSNQFYEVRVTV 771
                ++ +L        L+   L+     ++ E ++    + L    P    Y   +  
Sbjct: 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427

Query: 772 TVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGN 831
                   L         +  +  +      +E  +   +  L++SHN L  ++P +   
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCHLE--QLLLVTHLDLSHNRLR-ALPPALAA 484

Query: 832 LKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
           L+ +E L  S N L   +   +A+L  L  L L  N L
Sbjct: 485 LRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 3e-06
 Identities = 49/314 (15%), Positives = 91/314 (28%), Gaps = 39/314 (12%)

Query: 418 LFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSV 477
           +  L L  +     V             + L     + L     +     I         
Sbjct: 271 MGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKE 330

Query: 478 LDISDNQISGEVPNWIWEVGSGNLKFLNLSHN-LVVSLQEPYSISGIRFLDLHSNQLRGN 536
             +  ++      +   +     L    LS     V   E  S   ++ L+  +      
Sbjct: 331 CVLLKDRPECWCRDSATDE---QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLT 387

Query: 537 IPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQV 596
           I  +      + Y               +      Y     +           +  + +V
Sbjct: 388 IILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKFLLENSVLKMEYADVRV 445

Query: 597 LDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQ 656
           L L++ +L+  +           LE L L                   +  LDLS N+L+
Sbjct: 446 LHLAHKDLT-VLCH---------LEQLLL-------------------VTHLDLSHNRLR 476

Query: 657 GVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSW 716
             +P +LA    L+VL    N + +     + N   LQ L+L +N      +  +  VS 
Sbjct: 477 -ALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQ-QSAAIQPLVSC 532

Query: 717 PLLQIVDLACNKFS 730
           P L +++L  N   
Sbjct: 533 PRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 34/212 (16%), Positives = 61/212 (28%), Gaps = 37/212 (17%)

Query: 57  LENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFA-----GEIPTE 111
           LE       L  +  +     L    +       L  +  +  +           E    
Sbjct: 377 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL 436

Query: 112 ISSLTRLVTLDLSG--IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCK 169
                 +  L L+   +  + +            L+ L  +T L L    L A       
Sbjct: 437 KMEYADVRVLHLAHKDLTVLCH------------LEQLLLVTHLDLSHNRLRALPPA--- 481

Query: 170 ALSFLPNLQVLSLSGC---DLSGPINHYLAKSRSLSVIRLHYNYGLSS--GTEFLAHLTN 224
            L+ L  L+VL  S     ++ G     +A    L  + L  N  L      + L     
Sbjct: 482 -LAALRCLEVLQASDNALENVDG-----VANLPRLQELLLCNNR-LQQSAAIQPLVSCPR 534

Query: 225 LKALDLSE---CGLQGKFPEKILHVPTLETLD 253
           L  L+L     C  +G        +P++ ++ 
Sbjct: 535 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.2 bits (101), Expect = 4e-04
 Identities = 23/127 (18%), Positives = 39/127 (30%), Gaps = 15/127 (11%)

Query: 56  GLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSL 115
            L     L  L  +  L+L     +   +P  L  L  L  L  S       +   +++L
Sbjct: 452 DLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALE-NVD-GVANL 507

Query: 116 TRLVTLDLSGIVPIEYSYTVWIANLS--LFLQNLTELTELHLDRVDLSASGTEWCKALSF 173
            RL  L L             +   +    L +   L  L+L    L        +    
Sbjct: 508 PRLQELLLCN---------NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

Query: 174 LPNLQVL 180
           LP++  +
Sbjct: 559 LPSVSSI 565

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 81.0 bits (200), Expect = 2e-16
 Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 9/170 (5%)

Query: 341 SRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQLS 399
                 LDLS NNLS   +     +L NL  ++L HN L+  I    F+ +PNL  L LS
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96

Query: 400 NNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLA 459
           +N     L E        L  L L  N +   V  + F ++  L  L LS N+ SR    
Sbjct: 97  SNHLHT-LDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRF--- 151

Query: 460 SSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN 509
                 I       +L +LD+S N++       + ++ +     L L +N
Sbjct: 152 --PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 12/166 (7%)

Query: 543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESV-CKATNFQVLDLSN 601
            ++ +  S     ++P  +    S T       ++N+L+ +  E    + TN   L LS+
Sbjct: 19  ASNILSCSKQQLPNVPQSLP---SYTALLDL--SHNNLSRLRAEWTPTRLTNLHSLLLSH 73

Query: 602 NNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPK 661
           N+L+  I +       + L  L+L  N+L+ TL + +F     L++L L  N +  V   
Sbjct: 74  NHLN-FISSEAFVPVPN-LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRN 130

Query: 662 SLANCNMLQVLDLRSN---YISDNFPCWLRNASSLQVLVLRSNNFS 704
           +  +   LQ L L  N                  L +L L SN   
Sbjct: 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 8e-11
 Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 9/183 (4%)

Query: 524 RFLDLHSNQLRGNIP-YMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAG 582
             L     QL  N+P  +   T+ +D S+NN + + A+       T     + ++N L  
Sbjct: 21  NILSCSKQQLP-NVPQSLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNF 78

Query: 583 VIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGD 642
           +  E+     N + LDLS+N+L  T+   L +   + LEVL L  N++   +    F   
Sbjct: 79  ISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQA-LEVLLLYNNHIV-VVDRNAFEDM 135

Query: 643 CGLQILDLSGNQLQGVVPKSLANCN---MLQVLDLRSNYISDNFPCWLRNASSLQVLVLR 699
             LQ L LS NQ+     + + + N    L +LDL SN +       L+   +     L 
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

Query: 700 SNN 702
            +N
Sbjct: 196 LHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 47/224 (20%), Positives = 77/224 (34%), Gaps = 28/224 (12%)

Query: 198 SRSLSVIRLHYNY--GLSSGTEFLAHLTNLKALDLSECGLQGKFPEKIL-HVPTLETLDL 254
               +++ L +N    L +       LTNL +L LS   L      +    VP L  LDL
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTP-TRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95

Query: 255 SINQLLQGSLPN--FPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIP 312
           S N L   +L    F    +L  L+L +  +     ++  ++  L ++ +S    +   P
Sbjct: 96  SSNHL--HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FP 152

Query: 313 P----SMANLTQLFHMDFSSNHF-------FGPIPSLHKSRNLNNLDLSFNNLS---GGI 358
                    L +L  +D SSN            +P+       N L L  N L       
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW----VKNGLYLHNNPLECDCKLY 208

Query: 359 SSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQ 402
                 Q   L  V+     L     + L  + +L+    S  +
Sbjct: 209 QLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYK 252

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 43/183 (23%), Positives = 70/183 (38%), Gaps = 29/183 (15%)

Query: 107 EIPTEISSLTRLVTLDLSG--IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSA-- 162
            +P  + S T    LDLS   +  +   +             LT L  L L    L+   
Sbjct: 32  NVPQSLPSYTA--LLDLSHNNLSRLRAEW---------TPTRLTNLHSLLLSHNHLNFIS 80

Query: 163 SGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYN--YGLSSGTEFLA 220
           S      A   +PNL+ L LS   L        +  ++L V+ L+ N    +        
Sbjct: 81  SE-----AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA--FE 133

Query: 221 HLTNLKALDLSECGLQGKFPEKIL----HVPTLETLDLSINQLLQGSLPNFPKNSSLRDL 276
            +  L+ L LS+  +  +FP +++     +P L  LDLS N+L +  L +  K  +    
Sbjct: 134 DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

Query: 277 ILS 279
            L 
Sbjct: 193 GLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 51/264 (19%), Positives = 78/264 (29%), Gaps = 80/264 (30%)

Query: 368 NLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNR 427
              I+      L  ++P+SL       +L LS+N       E +    + L  L LS N 
Sbjct: 19  ASNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH 75

Query: 428 LEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISG 487
           L   +    F  + NL  LDLSSN    L         +    +   L VL + +N I  
Sbjct: 76  LNF-ISSEAFVPVPNLRYLDLSSNHLHTL------DEFL--FSDLQALEVLLLYNNHIV- 125

Query: 488 EVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYV 547
            V        +    F +++               ++ L L  NQ+              
Sbjct: 126 VVDR-----NA----FEDMAQ--------------LQKLYLSQNQI-------------- 148

Query: 548 DYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGT 607
                  +  P ++               N            K     +LDLS+N L   
Sbjct: 149 -------SRFPVEL-----------IKDGN------------KLPKLMLLDLSSNKLKKL 178

Query: 608 IPACLITKSSSTLEVLNLGRNNLN 631
               L    +     L L  N L 
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 33/148 (22%), Positives = 45/148 (30%), Gaps = 20/148 (13%)

Query: 90  NLTNLTYLNLSQGGFAGEIPTEI-SSLTRLVTLDLSG--IVPIEYSYTVWIANLSLFLQN 146
            LTNL  L LS       I +E    +  L  LDLS   +  ++               +
Sbjct: 62  RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLD----------EFLFSD 110

Query: 147 LTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSG-PIN--HYLAKSRSLSV 203
           L  L  L L    +         A   +  LQ L LS   +S  P+       K   L +
Sbjct: 111 LQALEVLLLYNNHIVVVDRN---AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLML 167

Query: 204 IRLHYNYGLSSGTEFLAHLTNLKALDLS 231
           + L  N         L  L       L 
Sbjct: 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 11/99 (11%)

Query: 779 KLLKVP-NIFTSI---DFSSNNFEGPIPVEM--GRFRSLYALNMSHNALTGSIPS-SFGN 831
           +L  VP ++ +     D S NN    +  E    R  +L++L +SHN L   I S +F  
Sbjct: 29  QLPNVPQSLPSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVP 86

Query: 832 LKEIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSYNNL 869
           +  +  LDLS N+L   +     + L  L VL L  N++
Sbjct: 87  VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI 124

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 82.7 bits (204), Expect = 2e-16
 Identities = 67/398 (16%), Positives = 132/398 (33%), Gaps = 32/398 (8%)

Query: 141 SLFLQNLTELTELHLDRVDLSASGTEWCKALS-FLPNLQVLSLSGCDLSGPINHYLAKSR 199
           SL L+        +L   +     T W   +S  L  L+ +      +S      LAK+R
Sbjct: 77  SLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKAR 136

Query: 200 --SLSVIRLHYNYGLSSG--TEFLAHLTNLKALDLSECGLQGKFPEKILHV----PTLET 251
              L  ++L    G ++      + H   +K L + E     K  + +  +     +LE 
Sbjct: 137 ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEV 196

Query: 252 LDLSINQLLQ---GSLPNFPKNS-SLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNF 307
           L+  + +  +     L    +N  SL  + +    +   L        NL      S N 
Sbjct: 197 LNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNE 255

Query: 308 TGPIPPSMANLTQLFHMDFSSNHFFGP--IPSLHK-SRNLNNLDLSFNNLSGGISSTFWE 364
              +P    NL     +      + GP  +P L   +  +  LDL +  L      T  +
Sbjct: 256 DIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315

Query: 365 QLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSN-NQFENQLPEISNVSSSVLF---- 419
           +  NL+++   +      +         L+ L++      +    E   VS   L     
Sbjct: 316 KCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375

Query: 420 ------DLDLSGNRLEGPVPISIFFELRNLYTLDLSS-NKFSRLKLASSKPRAIPILKNQ 472
                  + +  + +      SI   L+NL    L   ++  R+           +L   
Sbjct: 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435

Query: 473 SQLSVLDISDN--QISGEVPNWIWEVGSGNLKFLNLSH 508
            +L           ++    ++I +  S N++++ L +
Sbjct: 436 KKLRRFAFYLRQGGLTDLGLSYIGQ-YSPNVRWMLLGY 472

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 57.3 bits (138), Expect = 2e-08
 Identities = 77/578 (13%), Positives = 164/578 (28%), Gaps = 102/578 (17%)

Query: 149 ELTELHLDRVDLSASGTEWCKALSF-LPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLH 207
           ++     + V ++   T     LS   PNL+ L L G            ++   ++I  +
Sbjct: 46  KIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGK----------PRAAMFNLIPEN 95

Query: 208 YNYGLSSGTEFLA-HLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPN 266
           +   ++     ++ +L  LK++      +                 DL +++L +    +
Sbjct: 96  WGGYVTPWVTEISNNLRQLKSVHFRRMIV----------------SDLDLDRLAKARADD 139

Query: 267 FPKNSSLRDLILSH-TGLSGTLPDSIG-NLENLTRVEVSSCNFTGPIPPSMA----NLTQ 320
                 L  L L   +G +     SI  +   +  + +   +F+      +     + T 
Sbjct: 140 ------LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193

Query: 321 LFHMDFSSNHFFG----PIPSL-HKSRNLNNLDLSF-NNLSGGISSTFWEQLLNLQIVVL 374
           L  ++F    F       + ++    R+L ++ +     L           L       L
Sbjct: 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSL 253

Query: 375 GHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPI 434
             +        +L     L  L LS       +P +   ++  +  LDL    LE     
Sbjct: 254 NEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQ-IRKLDLLYALLETEDHC 311

Query: 435 SIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIW 494
           ++  +  NL  L+   N      L         + +   QL  L I        + +   
Sbjct: 312 TLIQKCPNLEVLETR-NVIGDRGLEV-------LAQYCKQLKRLRIERGADEQGMEDEEG 363

Query: 495 EVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGN----IPYMSPNTSYVDYS 550
            V    L  L  +               + ++ ++ + +       I     N       
Sbjct: 364 LVSQRGLIAL--AQGC----------QELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411

Query: 551 N----NNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSG 606
                   T +P D G                     +   +      +           
Sbjct: 412 LLDREERITDLPLDNG---------------------VRSLLIGCKKLRRFAFYLRQGGL 450

Query: 607 TIPACL-ITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLA- 664
           T      I + S  +  + LG    +         G   LQ L++ G         +   
Sbjct: 451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510

Query: 665 NCNMLQVLDLRSNYISDNFPCWL---RNASSLQVLVLR 699
               L+ L ++    S      +   R   +++++  R
Sbjct: 511 KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.3 bits (107), Expect = 9e-05
 Identities = 19/185 (10%), Positives = 43/185 (23%), Gaps = 21/185 (11%)

Query: 69  LQSLNLGFTLFKGFQIPSRLG-----------NLTNLTYLNLS-----QGGFAGEIPTEI 112
           L+ L +     +                        L Y+ +             I T +
Sbjct: 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE-SIGTYL 402

Query: 113 SSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALS 172
            +L     + L     I  +       +   L    +L            +         
Sbjct: 403 KNLCDFRLVLLDREERI--TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460

Query: 173 FLPNLQVLSLSGCDLSGP-INHYLAKSRSLSVIRLHYNYGLSSGTEFLA-HLTNLKALDL 230
           + PN++ + L     S   +  +     +L  + +                L +L+ L +
Sbjct: 461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV 520

Query: 231 SECGL 235
                
Sbjct: 521 QGYRA 525

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 46/261 (17%), Positives = 87/261 (33%), Gaps = 35/261 (13%)

Query: 316 ANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLG 375
             L      +         + S  +   + N +   +N+    S    +   NL+ + L 
Sbjct: 16  PGLANAVKQNLGKQSVTD-LVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKELHLS 71

Query: 376 HNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPIS 435
           HN +S  +   L  L  LE L ++ N+ +N    ++ + S+ L  L L  N L     + 
Sbjct: 72  HNQIS-DLS-PLKDLTKLEELSVNRNRLKN----LNGIPSACLSRLFLDNNELRDTDSLI 125

Query: 436 IFFELRNLYTLDLSSNKFS------------RLKLASSKPRAIPILKNQSQLSVLDISDN 483
               L+NL  L + +NK               L L  ++      L    +++ +D++  
Sbjct: 126 ---HLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQ 182

Query: 484 QISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPN 543
           +   E   +        L   N   +       PY IS           +   +P     
Sbjct: 183 KCVNEPVKY-----QPELYITNTVKDPDGRWISPYYISNGGSYV--DGCVLWELP---VY 232

Query: 544 TSYVDYSNNNFTSIPADIGNF 564
           T  V Y  + + ++      F
Sbjct: 233 TDEVSYKFSEYINVGETEAIF 253

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 36/261 (13%), Positives = 77/261 (29%), Gaps = 33/261 (12%)

Query: 110 TEISSLTRLVTLDLSG--IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEW 167
                L   V  +L    +  +               + L+ +        +   S  + 
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLV------------SQKELSGVQNF-----NGDNSNIQS 55

Query: 168 CKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKA 227
              + F  NL+ L LS   +S      L     L  + ++ N         +     L  
Sbjct: 56  LAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR--LKNLNGIPSA-CLSR 110

Query: 228 LDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTL 287
           L L    L+    + ++H+  LE L +  N+L   S+      S L  L L    ++   
Sbjct: 111 LFLDNNELRD--TDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITN-- 164

Query: 288 PDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNL 347
              +  L+ +  ++++              L     +      +  P   +    +  + 
Sbjct: 165 TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY-YISNGGSYVDG 223

Query: 348 DLSFNNLS--GGISSTFWEQL 366
            + +        +S  F E +
Sbjct: 224 CVLWELPVYTDEVSYKFSEYI 244

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 43/250 (17%), Positives = 76/250 (30%), Gaps = 43/250 (17%)

Query: 61  TGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVT 120
                L      NLG               L+ +   N        +    +   T L  
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDL---VSQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKE 67

Query: 121 LDLSG--IVPIEYSYTVWIANLSLFLQNLTELTELHLDR---VDLSASGTEWCKALSFLP 175
           L LS   I  +              L++LT+L EL ++R    +L+              
Sbjct: 68  LHLSHNQISDLS------------PLKDLTKLEELSVNRNRLKNLNGIP---------SA 106

Query: 176 NLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGL 235
            L  L L   +L    +  L   ++L ++ +  N  L S    L  L+ L+ LDL    +
Sbjct: 107 CLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNK-LKS-IVMLGFLSKLEVLDLHGNEI 162

Query: 236 QGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTL--PDSIGN 293
                  +  +  +  +DL+  + +   +   P+      +        G    P  I N
Sbjct: 163 TNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKD----PDGRWISPYYISN 216

Query: 294 LENLTRVEVS 303
             +     V 
Sbjct: 217 GGSYVDGCVL 226

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 31/226 (13%), Positives = 68/226 (30%), Gaps = 45/226 (19%)

Query: 466 IPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRF 525
           +      +     ++    ++  V     +     ++  N  ++ + SL      + ++ 
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLVS----QKELSGVQNFNGDNSNIQSLAGMQFFTNLKE 67

Query: 526 LDLHSNQLRGNIPYMSPNTS--YVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGV 583
           L L  NQ+  ++  +   T    +  + N   ++                          
Sbjct: 68  LHLSHNQIS-DLSPLKDLTKLEELSVNRNRLKNL-------------------------- 100

Query: 584 IPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDC 643
              +   +     L L NN L  T            LE+L++  N L    S  +     
Sbjct: 101 ---NGIPSACLSRLFLDNNELRDTDS----LIHLKNLEILSIRNNKLK---SIVMLGFLS 150

Query: 644 GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRN 689
            L++LDL GN++       L     +  +DL      +    +   
Sbjct: 151 KLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPE 194

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 18/138 (13%)

Query: 592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCG-LQILDL 650
           +  Q  +  N+N+         T     L+ L+L  N +    SD     D   L+ L +
Sbjct: 41  SGVQNFNGDNSNIQSLAGMQFFTN----LKELHLSHNQI----SDLSPLKDLTKLEELSV 92

Query: 651 SGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCP 710
           + N+L+ +    + +   L  L L +N + D     L +  +L++L +R+N     +   
Sbjct: 93  NRNRLKNLNG--IPSAC-LSRLFLDNNELRDTDS--LIHLKNLEILSIRNNK----LKSI 143

Query: 711 RNKVSWPLLQIVDLACNK 728
                   L+++DL  N+
Sbjct: 144 VMLGFLSKLEVLDLHGNE 161

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 30/226 (13%), Positives = 68/226 (30%), Gaps = 61/226 (26%)

Query: 645 LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS 704
               +L    +  +V       + +Q  +  ++ I       ++  ++L+ L L  N   
Sbjct: 21  AVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQ-- 74

Query: 705 GHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQF 764
             IS          L+ + +  N+                                    
Sbjct: 75  --ISDLSPLKDLTKLEELSVNRNRLK---------------------------------- 98

Query: 765 YEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGS 824
                        +  +    + + +   +N       +     ++L  L++ +N L  S
Sbjct: 99  ------------NLNGIPSACL-SRLFLDNNELRDTDSLI--HLKNLEILSIRNNKLK-S 142

Query: 825 IPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 870
           I    G L ++E LDL  N ++      L  L  ++ ++L+    V
Sbjct: 143 I-VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCV 185

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 30/192 (15%), Positives = 69/192 (35%), Gaps = 10/192 (5%)

Query: 266 NFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMD 325
           N P +S+ +  +    G S T   +   + +LT + +++ N T  +   +     +  + 
Sbjct: 16  NIP-DSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTD-LTG-IEYAHNIKDLT 72

Query: 326 FSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPR 385
            ++ H       +    NL  L +   +++          L +L ++ + H++   SI  
Sbjct: 73  INNIHATN-YNPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSILT 130

Query: 386 SLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYT 445
            +  LP +  + LS N     +  +  +    L  L++  + +          +   L  
Sbjct: 131 KINTLPKVNSIDLSYNGAITDIMPLKTLPE--LKSLNIQFDGVHD---YRGIEDFPKLNQ 185

Query: 446 LDLSSNKFSRLK 457
           L   S      K
Sbjct: 186 LYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 31/205 (15%), Positives = 83/205 (40%), Gaps = 26/205 (12%)

Query: 286 TLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLN 345
            +PDS    +      +   + T  I  + A +  L ++  ++ +    +  +  + N+ 
Sbjct: 16  NIPDS--TFKAYLNGLLGQ-SSTANI--TEAQMNSLTYITLANINVTD-LTGIEYAHNIK 69

Query: 346 NLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFEN 405
           +L ++  + +   +      L NL+ + +    ++     +L  L +L +L +S++  ++
Sbjct: 70  DLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 406 -QLPEISNVSSSVLFDLDLSGN-RLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKP 463
             L +I+ +    +  +DLS N  +   +P+     L  L +L++  +            
Sbjct: 127 SILTKINTLPK--VNSIDLSYNGAITDIMPLK---TLPELKSLNIQFDGVHD-------- 173

Query: 464 RAIPILKNQSQLSVLDISDNQISGE 488
                +++  +L+ L      I G+
Sbjct: 174 --YRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 7/162 (4%)

Query: 220 AHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILS 279
           A + +L  + L+   +       I +   ++ L ++       +       S+L  L + 
Sbjct: 41  AQMNSLTYITLANINV--TDLTGIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIM 96

Query: 280 HTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLH 339
              ++     ++  L +LT +++S       I   +  L ++  +D S N     I  L 
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK 156

Query: 340 KSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG 381
               L +L++ F+ +         E    L  +     ++ G
Sbjct: 157 TLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 34/171 (19%), Positives = 63/171 (36%), Gaps = 18/171 (10%)

Query: 89  GNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLT 148
             + +LTY+ L+      ++ T I     +  L ++ I            N +  +  L+
Sbjct: 41  AQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNI---------HATNYN-PISGLS 88

Query: 149 ELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHY 208
            L  L +   D+++        LS L +L +L +S       I   +     ++ I L Y
Sbjct: 89  NLERLRIMGKDVTSDKIP---NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 209 NYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQL 259
           N  ++     L  L  LK+L++   G+       I   P L  L      +
Sbjct: 146 NGAITD-IMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 45/220 (20%)

Query: 90  NLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTE 149
                    L Q   A     +++SLT    + L+ I          + +L+  ++    
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLT---YITLANI---------NVTDLT-GIEYAHN 67

Query: 150 LTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYN 209
           + +L ++ +  +         +S L NL+ L + G D++                     
Sbjct: 68  IKDLTINNIHATNY-----NPISGLSNLERLRIMGKDVT--------------------- 101

Query: 210 YGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPK 269
              S     L+ LT+L  LD+S          KI  +P + ++DLS N  +   +     
Sbjct: 102 ---SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPLKT 157

Query: 270 NSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTG 309
              L+ L +   G+       I +   L ++   S    G
Sbjct: 158 LPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 21/160 (13%), Positives = 58/160 (36%), Gaps = 13/160 (8%)

Query: 174 LPNLQVLSLSGC---DLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDL 230
           + +L  ++L+     DL+G     +  + ++  + ++  +   +    ++ L+NL+ L +
Sbjct: 43  MNSLTYITLANINVTDLTG-----IEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRI 95

Query: 231 SECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDS 290
               +       +  + +L  LD+S +      L        +  + LS+ G    +   
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MP 154

Query: 291 IGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNH 330
           +  L  L  + +            + +  +L  +   S  
Sbjct: 155 LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 7e-09
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 21/131 (16%)

Query: 57  LENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLT 116
             N   +  L  L+ L +        +IP+ L  LT+LT L++S       I T+I++L 
Sbjct: 78  ATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 117 RLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDR---VDLSASGTEWCKALSF 173
           ++ ++DL        SY   I ++   L+ L EL  L++      D           +  
Sbjct: 137 KVNSIDL--------SYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--------GIED 179

Query: 174 LPNLQVLSLSG 184
            P L  L    
Sbjct: 180 FPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 788 TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSG 847
             +     +        +    SL  L++SH+A   SI +    L ++ S+DLS N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 848 KIPAQLASLNFLSVLNLSYNNL 869
            I   L +L  L  LN+ ++ +
Sbjct: 151 DIMP-LKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 11/137 (8%)

Query: 574 VAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLN-- 631
           +      +     +  +  +   + L+N N++              ++ L +   +    
Sbjct: 26  LNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHN----IKDLTINNIHATNY 81

Query: 632 GTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNAS 691
             +S         L+ L + G  +      +L+    L +LD+  +   D+    +    
Sbjct: 82  NPISGLS-----NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 692 SLQVLVLRSNNFSGHIS 708
            +  + L  N     I 
Sbjct: 137 KVNSIDLSYNGAITDIM 153

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 788 TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSG 847
             +  ++ +     P+      +L  L +    +T     +   L  +  LD+S +    
Sbjct: 69  KDLTINNIHATNYNPISG--LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 848 KIPAQLASLNFLSVLNLSYNNLVGKI 873
            I  ++ +L  ++ ++LSYN  +  I
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 6/114 (5%)

Query: 592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLS 651
           +N + L +   +++      L     ++L +L++  +  + ++   I      +  +DLS
Sbjct: 88  SNLERLRIMGKDVTSDKIPNL--SGLTSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLS 144

Query: 652 GNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSG 705
            N     +   L     L+ L+++ + + D     + +   L  L   S    G
Sbjct: 145 YNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 13/82 (15%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 788 TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSG 847
           T +D S +  +  I  ++     + ++++S+N     I      L E++SL++  + +  
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD 173

Query: 848 KIPAQLASLNFLSVLNLSYNNL 869
                +     L+ L      +
Sbjct: 174 YRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 788 TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSG 847
           T I  ++ N      +E     ++  L +++   T    +    L  +E L +   +++ 
Sbjct: 47  TYITLANINVTDLTGIE--YAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTS 102

Query: 848 KIPAQLASLNFLSVLNLSYNNLVGKIPTS 876
                L+ L  L++L++S++     I T 
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 75.1 bits (185), Expect = 7e-15
 Identities = 49/182 (26%), Positives = 70/182 (38%), Gaps = 10/182 (5%)

Query: 223 TNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTG 282
            +   L LSE  L       ++    L  L+L   +L    L        L  L LSH  
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQ 88

Query: 283 LSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSM-ANLTQLFHMDFSSNHFFGPIPS--LH 339
           L  +LP     L  LT ++VS    T  +P      L +L  +    N     +P   L 
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNEL-KTLPPGLLT 145

Query: 340 KSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLS 399
            +  L  L L+ NNL+  + +     L NL  ++L  NSL  +IP+  F    L    L 
Sbjct: 146 PTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH 203

Query: 400 NN 401
            N
Sbjct: 204 GN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 54/209 (25%), Positives = 76/209 (36%), Gaps = 15/209 (7%)

Query: 246 VPTLETLDLSINQLLQGSLP-NFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSS 304
           V +   ++     L   +LP + PK+     L LS   L      ++     LT++ +  
Sbjct: 9   VASHLEVNCDKRNL--TALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 305 CNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSL-HKSRNLNNLDLSFNNLSGGISSTFW 363
              T         L  L  +D S N     +P L      L  LD+SFN L+  +     
Sbjct: 65  AELT--KLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTS-LPLGAL 120

Query: 364 EQLLNLQIVVLGHNSLSGSIPRSLF-LLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLD 422
             L  LQ + L  N L  ++P  L    P LE L L+NN    +LP         L  L 
Sbjct: 121 RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178

Query: 423 LSGNRLEGPVPISIFFELRNLYTLDLSSN 451
           L  N L   +P   F     L    L  N
Sbjct: 179 LQENSLYT-IPKGFF-GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 48/260 (18%), Positives = 78/260 (30%), Gaps = 65/260 (25%)

Query: 442 NLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNL 501
           +   ++      + L      P  +P        ++L +S+N +       +  +    L
Sbjct: 11  SHLEVNCDKRNLTAL------PPDLP-----KDTTILHLSENLLYTFSLATL--MPYTRL 57

Query: 502 KFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADI 561
             LNL    +  LQ   ++  +  LDL  NQL                      S+P   
Sbjct: 58  TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL---------------------QSLPLLG 96

Query: 562 GNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLE 621
                                             VLD+S N L+ ++P   +      L+
Sbjct: 97  QTL---------------------------PALTVLDVSFNRLT-SLPLGALRGLGE-LQ 127

Query: 622 VLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISD 681
            L L  N L  TL   +      L+ L L+ N L  +    L     L  L L+ N +  
Sbjct: 128 ELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185

Query: 682 NFPCWLRNASSLQVLVLRSN 701
             P     +  L    L  N
Sbjct: 186 TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 29/207 (14%)

Query: 334 PIPSLHKSRNLNNLDLSFNNLS---GGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL- 389
           PI  + K  +   ++    NL+     +         +  I+ L  N L  +   +  + 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLPK-------DTTILHLSENLLY-TFSLATLMP 53

Query: 390 LPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLS 449
              L  L L   +    L     +    L  LDLS N+L+  +P  +   L  L  LD+S
Sbjct: 54  YTRLTQLNLDRAELTK-LQVDGTLPV--LGTLDLSHNQLQS-LP-LLGQTLPALTVLDVS 108

Query: 450 SNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN 509
            N+ + L      P     L+   +L  L +  N++   +P  +    +  L+ L+L++N
Sbjct: 109 FNRLTSL------PLG--ALRGLGELQELYLKGNELK-TLPPGLLT-PTPKLEKLSLANN 158

Query: 510 LVVSLQEP--YSISGIRFLDLHSNQLR 534
            +  L       +  +  L L  N L 
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 47/202 (23%), Positives = 68/202 (33%), Gaps = 27/202 (13%)

Query: 84  IPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLF 143
           +P  L    + T L+LS+          +   TRL  L+L             +  L + 
Sbjct: 25  LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---------LTKLQVD 73

Query: 144 LQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSV 203
              L  L  L L    L +           LP L VL +S   L+      L     L  
Sbjct: 74  -GTLPVLGTLDLSHNQLQSLPL----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 204 IRLHYN--YGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKIL-HVPTLETLDLSINQLL 260
           + L  N    L  G   L     L+ L L+   L  + P  +L  +  L+TL L  N L 
Sbjct: 129 LYLKGNELKTLPPGL--LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL- 184

Query: 261 QGSLPN--FPKNSSLRDLILSH 280
             ++P   F  +  L    L  
Sbjct: 185 -YTIPKGFFG-SHLLPFAFLHG 204

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 48/243 (19%), Positives = 91/243 (37%), Gaps = 28/243 (11%)

Query: 316 ANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLG 375
               +    +           + ++  +++ +  + +++    S    + L N+  + L 
Sbjct: 21  DAFAETIKDNLKKKSVTD-AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76

Query: 376 HNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSV-LFDLDLSGNRLEGPVPI 434
            N L+  I   L  L NL  L L  N+    + ++S++     L  L L  N +     I
Sbjct: 77  GNKLT-DIK-PLANLKNLGWLFLDENK----VKDLSSLKDLKKLKSLSLEHNGISD---I 127

Query: 435 SIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIW 494
           +    L  L +L L +NK +           I +L   ++L  L + DNQIS ++     
Sbjct: 128 NGLVHLPQLESLYLGNNKITD----------ITVLSRLTKLDTLSLEDNQIS-DIVPL-- 174

Query: 495 EVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNF 554
             G   L+ L LS N +  L+    +  +  L+L S +          N    +   N  
Sbjct: 175 -AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233

Query: 555 TSI 557
            S+
Sbjct: 234 GSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 46/249 (18%), Positives = 91/249 (36%), Gaps = 18/249 (7%)

Query: 203 VIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQG 262
            I+ +      +       L ++  +  +   +  K  + I ++P +  L L+ N+L   
Sbjct: 26  TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKL--T 81

Query: 263 SLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLF 322
            +       +L  L L    +      S+ +L+ L  + +     +  I   + +L QL 
Sbjct: 82  DIKPLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISD-ING-LVHLPQLE 137

Query: 323 HMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGS 382
            +   +N     I  L +   L+ L L  N +S          L  LQ + L  N +S  
Sbjct: 138 SLYLGNNKITD-ITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHIS-D 192

Query: 383 IPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRN 442
           + R+L  L NL++L+L + +  N          S L   +   N     V   I  +  +
Sbjct: 193 L-RALAGLKNLDVLELFSQECLN----KPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD 247

Query: 443 LYTLDLSSN 451
               ++  +
Sbjct: 248 YEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 50/314 (15%), Positives = 96/314 (30%), Gaps = 59/314 (18%)

Query: 57  LENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLT 116
           ++              NL                L ++  +  +       +   I  L 
Sbjct: 14  IKQIFSDDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIK-SV-QGIQYLP 68

Query: 117 RLVTLDLSG--IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFL 174
            +  L L+G  +  I+             L NL  L  L LD   +         +L  L
Sbjct: 69  NVTKLFLNGNKLTDIK------------PLANLKNLGWLFLDENKVKD-----LSSLKDL 111

Query: 175 PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECG 234
             L+ LSL                  +S I              L HL  L++L L    
Sbjct: 112 KKLKSLSLEHN--------------GISDI------------NGLVHLPQLESLYLGNNK 145

Query: 235 LQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNL 294
           +       +  +  L+TL L  NQ+    +      + L++L LS   +S     ++  L
Sbjct: 146 ITD--ITVLSRLTKLDTLSLEDNQIS--DIVPLAGLTKLQNLYLSKNHISDL--RALAGL 199

Query: 295 ENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNN- 353
           +NL  +E+ S           +NL     +  +          +    +    ++ ++  
Sbjct: 200 KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV-TPEIISDDGDYEKPNVKWHLP 258

Query: 354 -LSGGISSTFWEQL 366
             +  +S  F++ +
Sbjct: 259 EFTNEVSFIFYQPV 272

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 45/269 (16%), Positives = 89/269 (33%), Gaps = 44/269 (16%)

Query: 144 LQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSV 203
                E  + +L +  ++          + L ++  +  +  D+            S+  
Sbjct: 20  DDAFAETIKDNLKKKSVTD-----AVTQNELNSIDQIIANNSDIK-----------SV-- 61

Query: 204 IRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGS 263
                        + + +L N+  L L+   L    P  + ++  L  L L  N++    
Sbjct: 62  -------------QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK--D 104

Query: 264 LPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFH 323
           L +      L+ L L H G+S    + + +L  L  + + +   T      ++ LT+L  
Sbjct: 105 LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDT 160

Query: 324 MDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSI 383
           +    N     I  L     L NL LS N++S          L NL ++ L         
Sbjct: 161 LSLEDNQISD-IVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKP 216

Query: 384 PRSLFLLPNLEMLQLSNNQFENQLPEISN 412
                 L     ++ ++         IS+
Sbjct: 217 INHQSNLVVPNTVKNTDGSLVT-PEIISD 244

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 43/286 (15%), Positives = 84/286 (29%), Gaps = 81/286 (28%)

Query: 421 LDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDI 480
            +L    +   V  +   EL ++  +  +++              +  ++    ++ L +
Sbjct: 29  DNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKS----------VQGIQYLPNVTKLFL 75

Query: 481 SDNQISGEVPNWIWEVGS-GNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPY 539
           + N+++      I  + +  NL +L L  N V  L     +  ++ L L  N +  +I  
Sbjct: 76  NGNKLTD-----IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS-DING 129

Query: 540 MSPNTS--YVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVL 597
           +        +   NN  T I                              + + T    L
Sbjct: 130 LVHLPQLESLYLGNNKITDI----------------------------TVLSRLTKLDTL 161

Query: 598 DLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQG 657
            L +N +S              L  L                     LQ L LS N +  
Sbjct: 162 SLEDNQIS----------DIVPLAGLT-------------------KLQNLYLSKNHISD 192

Query: 658 VVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNF 703
           +  ++LA    L VL+L S    +       N      +     + 
Sbjct: 193 L--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 46/210 (21%), Positives = 73/210 (34%), Gaps = 34/210 (16%)

Query: 56  GLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSL 115
            +++  G+  L  +  L L             L NL NL +L L +     ++ + +  L
Sbjct: 57  DIKSVQGIQYLPNVTKLFLNGNKLTDI---KPLANLKNLGWLFLDENKVK-DL-SSLKDL 111

Query: 116 TRLVTLDLSG--IVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSF 173
            +L +L L    I  I              L +L +L  L+L    ++         LS 
Sbjct: 112 KKLKSLSLEHNGISDIN------------GLVHLPQLESLYLGNNKITD-----ITVLSR 154

Query: 174 LPNLQVLSLSGC---DLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDL 230
           L  L  LSL      D+       LA    L  + L  N  +S     LA L NL  L+L
Sbjct: 155 LTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKN-HISD-LRALAGLKNLDVLEL 207

Query: 231 SECGLQGKFPEKILHVPTLETLDLSINQLL 260
                  K      ++    T+  +   L+
Sbjct: 208 FSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 49/329 (14%), Positives = 96/329 (29%), Gaps = 63/329 (19%)

Query: 368 NLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNR 427
           + ++ +   + ++  IP  L    N   L+    +    + + +      L  +++S N 
Sbjct: 10  SNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQND 65

Query: 428 LEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISG 487
           +   +   +F  L  L+ + +         L    P A    +N   L  L IS+  I  
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKAN----NLLYINPEA---FQNLPNLQYLLISNTGIK- 117

Query: 488 EVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYV 547
            +P+    + S     L++  N+                 +  N   G    +S  +  +
Sbjct: 118 HLPDVHK-IHSLQKVLLDIQDNI-------------NIHTIERNSFVG----LSFESVIL 159

Query: 548 DYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGT 607
             + N    I     N     E       NN+L  +  +    A+   +LD+S   +   
Sbjct: 160 WLNKNGIQEIHNSAFNGTQLDELNLS--DNNNLEELPNDVFHGASGPVILDISRTRIH-- 215

Query: 608 IPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN 667
                                    +L          L+       +    +P +L    
Sbjct: 216 -------------------------SLPSYGLENLKKLRARSTYNLK---KLP-TLEKLV 246

Query: 668 MLQVLDLRSNYISDNFPCWLRNASSLQVL 696
            L    L        F  W R  S L  +
Sbjct: 247 ALMEASLTYPSHCCAFANWRRQISELHPI 275

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 44/288 (15%), Positives = 89/288 (30%), Gaps = 52/288 (18%)

Query: 421 LDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDI 480
                +++   +P  +    RN   L     K   ++       A         L  ++I
Sbjct: 14  FLCQESKVTE-IPSDLP---RNAIELRFVLTKLRVIQ-----KGA---FSGFGDLEKIEI 61

Query: 481 SDNQISGEVPNWIWEVGSGNLKFLNLSH-NLVVSLQEP--YSISGIRFLDLHSNQLR--- 534
           S N +   +   ++      L  + +   N ++ +      ++  +++L + +  ++   
Sbjct: 62  SQNDVLEVIEADVFS-NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP 120

Query: 535 -GNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATN 593
             +  +           N N  +I                    NS  G+  ES      
Sbjct: 121 DVHKIHSLQKVLLDIQDNINIHTIE------------------RNSFVGLSFES------ 156

Query: 594 FQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGN 653
             +L L+ N +   I       +    E+     NNL   L + +F G  G  ILD+S  
Sbjct: 157 -VILWLNKNGIQ-EIHNSAFNGTQL-DELNLSDNNNLE-ELPNDVFHGASGPVILDISRT 212

Query: 654 QLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSN 701
           ++  +    L N   L+     +       P  L    +L    L   
Sbjct: 213 RIHSLPSYGLENLKKLRARSTYNL---KKLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 18/237 (7%)

Query: 223 TNLKALDLSECGLQGKFPEKILH-VPTLETLDLSINQLLQGSLPN--FPKNSSLRDLILS 279
            N   L      L+    +        LE +++S N +L+  +    F     L ++ + 
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIE 87

Query: 280 HT-GLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPS- 337
               L    P++  NL NL  + +S+            +  Q   +D   N     I   
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 338 --LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLE 394
             +  S     L L+ N +   I ++ +      ++ +  +N+L   +P  +F       
Sbjct: 148 SFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPV 205

Query: 395 MLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSN 451
           +L +S  +  + LP     +   L        +      +    +L  L    L+  
Sbjct: 206 ILDISRTRIHS-LPSYGLENLKKLRARSTYNLKK-----LPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.4 bits (149), Expect = 5e-10
 Identities = 52/260 (20%), Positives = 87/260 (33%), Gaps = 39/260 (15%)

Query: 148 TELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPI-NHYLAKSRSLSVIRL 206
               EL      L         A S   +L+ + +S  D+   I     +    L  IR+
Sbjct: 30  RNAIELRFVLTKLRVIQK---GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86

Query: 207 HYNYGLSS-GTEFLAHLTNLKALDLSECGLQGKFPEKI-LHVPTLETLDLSINQLLQGSL 264
                L     E   +L NL+ L +S  G++   P+   +H      LD+  N  +  ++
Sbjct: 87  EKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIH-TI 144

Query: 265 PN--FPK-NSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQL 321
               F   +     L L+  G+   + +S  N   L  + +S  N          NL +L
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN----------NLEEL 193

Query: 322 FHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG 381
                       P    H +     LD+S   +   + S   E L  L+       +L  
Sbjct: 194 ------------PNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRA--RSTYNLK- 237

Query: 382 SIPRSLFLLPNLEMLQLSNN 401
            +P +L  L  L    L+  
Sbjct: 238 KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 48/267 (17%), Positives = 87/267 (32%), Gaps = 48/267 (17%)

Query: 69  LQSLNLGFTLFKGFQIPSR-LGNLTNLTYLNLSQGGFAGEIPTEI-SSLTRLVTLDLSGI 126
              L    T  +   I         +L  + +SQ      I  ++ S+L +L  + +   
Sbjct: 32  AIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE-- 87

Query: 127 VPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCD 186
                                  L  ++ +             A   LPNLQ L +S   
Sbjct: 88  -------------------KANNLLYINPE-------------AFQNLPNLQYLLISNTG 115

Query: 187 LSGPINHYLAKSRSLSVIRLHYNYGLSS--GTEFLAHLTNLKALDLSECGLQGKFPEKIL 244
           +    + +   S    ++ +  N  + +     F+        L L++ G+Q +      
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF 174

Query: 245 HVPTLETLDLSINQLLQGSLPN--FPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEV 302
           +   L+ L+LS N  L+  LPN  F   S    L +S T +       + NL+ L     
Sbjct: 175 NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR--AR 231

Query: 303 SSCNFTGPIPPSMANLTQLFHMDFSSN 329
           S+ N      P++  L  L     +  
Sbjct: 232 STYNLK--KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 48/278 (17%), Positives = 91/278 (32%), Gaps = 53/278 (19%)

Query: 592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLS 651
            N   L      L   I     +     LE + + +N++   +   +F     L  + + 
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGD-LEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 652 -GNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCP 710
             N L  + P++  N   LQ L + +  I         ++    +L ++ N         
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-------- 139

Query: 711 RNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVT 770
                     I  +  N F G   +  +L +           N +  E+ ++ F   ++ 
Sbjct: 140 ---------NIHTIERNSFVGLSFESVILWL---------NKNGI-QEIHNSAFNGTQLD 180

Query: 771 VTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPS-SF 829
                     L   N    +   ++ F G              L++S   +  S+PS   
Sbjct: 181 EL-------NLSDNNNLEEL--PNDVFHG--------ASGPVILDISRTRIH-SLPSYGL 222

Query: 830 GNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 867
            NLK++ +      NL  K+P  L  L  L   +L+Y 
Sbjct: 223 ENLKKLRARST--YNLK-KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 12/168 (7%)

Query: 541 SPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLS 600
             +        +  T IP+D+           F      L  +   +     + + +++S
Sbjct: 8   HCSNRVFLCQESKVTEIPSDL---PRNAIELRF--VLTKLRVIQKGAFSGFGDLEKIEIS 62

Query: 601 NNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP 660
            N++   I A + +     L  + + + N    ++   F     LQ L +S   ++ +  
Sbjct: 63  QNDVLEVIEADVFSNLPK-LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121

Query: 661 KSLANCNMLQVLDLRSN----YISDNFPCWLRNASSLQVLVLRSNNFS 704
               +     +LD++ N     I  N    L       +L L  N   
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF--ESVILWLNKNGIQ 167

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.1 bits (125), Expect = 5e-07
 Identities = 41/299 (13%), Positives = 88/299 (29%), Gaps = 53/299 (17%)

Query: 585 PESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCG 644
              +C  +N +V     + ++  IP+ L          L      L   +    F G   
Sbjct: 3   HHRICHCSN-RVFLCQESKVT-EIPSDL----PRNAIELRFVLTKLR-VIQKGAFSGFGD 55

Query: 645 LQILDLSGNQ-LQGVVPKSLANCNMLQVLDL-RSNYISDNFPCWLRNASSLQVLVLRSNN 702
           L+ +++S N  L+ +     +N   L  + + ++N +    P   +N  +LQ L++ +  
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

Query: 703 FSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSN 762
              H+    +K+      ++D+  N     + +             G     + + +  N
Sbjct: 116 IK-HLP-DVHKIHSLQKVLLDIQDNINIHTIERNSF---------VGLSFESVILWLNKN 164

Query: 763 QFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALT 822
              E+                          ++ F G         +        +N L 
Sbjct: 165 GIQEI-------------------------HNSAFNGT--------QLDELNLSDNNNLE 191

Query: 823 GSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQS 881
                 F        LD+S   +       L +L  L   +      +  +     L  
Sbjct: 192 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALME 250

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 68.2 bits (167), Expect = 4e-12
 Identities = 61/338 (18%), Positives = 106/338 (31%), Gaps = 75/338 (22%)

Query: 393 LEMLQLSNNQFENQ--------LPEISNVSSSVLFDLDLSGNRL--EGPVPISIFFE-LR 441
           +E   L  +    +        L E  +V       + LSGN +  E    +S      +
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKE-----IVLSGNTIGTEAARWLSENIASKK 60

Query: 442 NLYTLDLSSNKFSRLKLASSKP-RAI-PILKNQSQLSVLDISDNQISGEVPNWIWEVGSG 499
           +L   + S     R+K    +  R +   L    +L  + +SDN         + +  S 
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 500 N--LKFLNLSHN---------LVVSLQEPYSI------SGIRFLDLHSNQLR-------G 535
           +  L+ L L +N         +  +LQE            +R +    N+L         
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180

Query: 536 NIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQ 595
                      V    N         G                 +  ++ E +      +
Sbjct: 181 KTFQSHRLLHTVKMVQNGIR----PEG-----------------IEHLLLEGLAYCQELK 219

Query: 596 VLDLSNNNLS--GTIPACLITKSSSTLEVLNLGRNNLNGT----LSDTIFPGD-CGLQIL 648
           VLDL +N  +  G+    +  KS   L  L L    L+      + D     +  GLQ L
Sbjct: 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279

Query: 649 DLSGNQLQGVVPKSLA-----NCNMLQVLDLRSNYISD 681
            L  N+++    ++L          L  L+L  N  S+
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.0 bits (164), Expect = 8e-12
 Identities = 60/370 (16%), Positives = 110/370 (29%), Gaps = 81/370 (21%)

Query: 144 LQNLTELTELHLDRVDLSASGTEW-CKALSFLPNLQVLSLSGCDLSGP----INHYLAKS 198
           +   + +    L    ++    +     L    +++ + LSG  +       ++  +A  
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 199 RSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQ 258
           + L +      +      E    L  L    L +C             P L T+ LS N 
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLL-LQALLKC-------------PKLHTVRLSDNA 105

Query: 259 LLQGSLPNF----PKNSSLRDLILSHTGLSGTLPDSIGNL-ENLTRVEVSSCNFTGPIPP 313
               +         K++ L  L L + GL    P +   +   L  + V+          
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKIARALQELAVNK--------- 153

Query: 314 SMANLTQLFHMDFSSNHFFGP-----IPSLHKSRNLNNLDLSFNNLSG-GISSTFWEQLL 367
              N   L  +    N            +    R L+ + +  N +   GI     E   
Sbjct: 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE--- 210

Query: 368 NLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQ-LPEISNV--SSSVLFDLDLS 424
                 L +                L++L L +N F +     ++    S   L +L L+
Sbjct: 211 -----GLAYC-------------QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252

Query: 425 GNRL--EGPVPISIFFEL---RNLYTLDLSSNKFSR---LKLASSKPRAIPILKNQSQLS 476
              L   G   +   F       L TL L  N+        L +       I +    L 
Sbjct: 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV------IDEKMPDLL 306

Query: 477 VLDISDNQIS 486
            L+++ N+ S
Sbjct: 307 FLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 48/264 (18%), Positives = 82/264 (31%), Gaps = 47/264 (17%)

Query: 60  ATGLFDLQYLQSLNLG--FTLFKGFQIP-------SRLGNLTNLTYLNLSQGGF----AG 106
           +  +   + L+       FT     +IP         L     L  + LS   F      
Sbjct: 53  SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112

Query: 107 EIPTEISSLTRLVTLDLS-------GIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVD 159
            +   +S  T L  L L            I  +  +    ++   +N   L  +   R  
Sbjct: 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKI--ARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 160 LSASGTE-WCKALSFLPNLQVLSLSGCDL-----SGPINHYLAKSRSLSVIRLHYNY--- 210
           L     + W K       L  + +    +        +   LA  + L V+ L  N    
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230

Query: 211 -GLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHV------PTLETLDLSINQL---- 259
            G S+    L    NL+ L L++C L  +    ++          L+TL L  N++    
Sbjct: 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290

Query: 260 ---LQGSLPNFPKNSSLRDLILSH 280
              L+  +    K   L  L L+ 
Sbjct: 291 VRTLKTVIDE--KMPDLLFLELNG 312

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 50/313 (15%), Positives = 97/313 (30%), Gaps = 53/313 (16%)

Query: 69  LQSLNLGFTLF--KGFQ-IPSRLGNLTNLTYLNLSQGGF----AGEIPTEISSLTRLVTL 121
           ++  +L       +  + + + L    ++  + LS        A  +   I+S   L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 122 DLSGIV--PIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEW-CKALSFLPNLQ 178
           + S I    ++      +  L   L    +L  + L       +  E     LS    L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 179 VLSLSGCDLS-------------GPINHYLAKSRSLSVIRLHYNYGLSSGTEFLA----H 221
            L L    L                +N     +  L  I    N   +   +  A     
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 222 LTNLKALDLSEC-----GLQGKFPEKILHVPTLETLDLSINQL-------LQGSLPNFPK 269
              L  + + +      G++    E + +   L+ LDL  N         L  +L +   
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS--- 242

Query: 270 NSSLRDLILSHTGLSGT----LPDSIGNLEN--LTRVEVSSCNFTGP----IPPSMA-NL 318
             +LR+L L+   LS      + D+   LEN  L  + +            +   +   +
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 319 TQLFHMDFSSNHF 331
             L  ++ + N F
Sbjct: 303 PDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 60/316 (18%), Positives = 107/316 (33%), Gaps = 61/316 (19%)

Query: 248 TLETLDLSINQL----LQGSLPNFPKNSSLRDLILSHTGLSGT----LPDSIGNLENLTR 299
           ++E   L ++ +     +       ++ S+++++LS   +       L ++I + ++L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 300 VEVSSCNFTG----PIPPSMANL-------TQLFHMDFSSNHFFGPI------PSLHKSR 342
            E S   FTG     IP ++  L        +L  +  S N F GP         L K  
Sbjct: 65  AEFS-DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHT 122

Query: 343 NLNNLDLSFNN------------LSGGISSTFWEQLLNLQIVVLGHNSLSG----SIPRS 386
            L +L L  N             L     +   +    L+ ++ G N L         ++
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 387 LFLLPNLEMLQLSNNQFENQ--LPEISNV--SSSVLFDLDLSGNRL--EGPVPISIFFE- 439
                 L  +++  N    +     +         L  LDL  N     G   ++I  + 
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 440 LRNLYTLDLSSNKFSR---LKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEV 496
             NL  L L+    S      +      A   L+N   L  L +  N+I  +    +  V
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVD----AFSKLENIG-LQTLRLQYNEIELDAVRTLKTV 297

Query: 497 GSGN---LKFLNLSHN 509
                  L FL L+ N
Sbjct: 298 IDEKMPDLLFLELNGN 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.2 bits (141), Expect = 6e-09
 Identities = 48/291 (16%), Positives = 88/291 (30%), Gaps = 68/291 (23%)

Query: 441 RNLYTLDLSSNKFSR---LKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEV- 496
            ++    L  +  +      + +        L     +  + +S N I  E   W+ E  
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAV-------LLEDDSVKEIVLSGNTIGTEAARWLSENI 56

Query: 497 -GSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFT 555
               +L+    S      +++      +R L      L        P    V  S+N F 
Sbjct: 57  ASKKDLEIAEFSDIFTGRVKDE-IPEALRLL---LQALLKC-----PKLHTVRLSDNAFG 107

Query: 556 SIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLS---------- 605
                                       + + + K T  + L L NN L           
Sbjct: 108 ----PTA------------------QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145

Query: 606 -GTIPACLITKSSSTLEVLNLGRNNLNG----TLSDTIFPGDCGLQILDLSGNQL----- 655
              +      K++  L  +  GRN L        + T F     L  + +  N +     
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT-FQSHRLLHTVKMVQNGIRPEGI 204

Query: 656 QGVVPKSLANCNMLQVLDLRSNYISDN----FPCWLRNASSLQVLVLRSNN 702
           + ++ + LA C  L+VLDL+ N  +          L++  +L+ L L    
Sbjct: 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 45/326 (13%), Positives = 88/326 (26%), Gaps = 68/326 (20%)

Query: 581 AGVIPESVCKATNFQVLDLSNNNLS--GTIPACLITKSSSTLEVLNLGRNNLNGTLSDTI 638
              +   + +  + + + LS N +             S   LE+         G + D I
Sbjct: 21  EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT-GRVKDEI 79

Query: 639 FPG----------DCGLQILDLSGNQL--QGVVP--KSLANCNMLQVLDLRSNYISD--- 681
                           L  + LS N        P    L+    L+ L L +N +     
Sbjct: 80  PEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139

Query: 682 ----------NFPCWLRNASSLQVLVLRSNNFSG----HISC--PRNKVSWPLLQIVDLA 725
                           +NA  L+ ++   N          +     +++    L  V + 
Sbjct: 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL----LHTVKMV 195

Query: 726 CNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEI--KLLKV 783
            N       +  LL  +        E+  L ++   N F       T  G       LK 
Sbjct: 196 QNGIRPEGIEHLLLEGL----AYCQELKVLDLQ--DNTF-------THLGSSALAIALKS 242

Query: 784 PNIFTSIDFSSNNF--EGPIPV----EMGRFRSLYALNMSHNALTGSIPSSFG-----NL 832
                 +  +       G   V           L  L + +N +      +        +
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 833 KEIESLDLSMNNLS--GKIPAQLASL 856
            ++  L+L+ N  S    +  ++  +
Sbjct: 303 PDLLFLELNGNRFSEEDDVVDEIREV 328

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 40/261 (15%), Positives = 75/261 (28%), Gaps = 46/261 (17%)

Query: 645 LQILDLSGNQL--QGVVP--KSLANCNMLQVLDLRSNYISDN----FPCWLRNASSLQVL 696
           ++   L  + +  +        L   + ++ + L  N I           + +   L++ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 697 VLRSNNFSGHISCPRNKVSWPL---------LQIVDLACNKFSGRLSQKWLLTMMVAETK 747
              S+ F+G +     +    L         L  V L+ N F     +   L   +++  
Sbjct: 66  EF-SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE--PLIDFLSKHT 122

Query: 748 SGSEV----NHLGIEMPSNQFYEVRV--TVTVKGIEIKLLKVPNIFTSIDFSSNNFEGP- 800
               +    N LG +                 +    K  K      SI    N  E   
Sbjct: 123 PLEHLYLHNNGLGPQ-------AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175

Query: 801 ---IPVEMGRFRSLYALNMSHNALT-----GSIPSSFGNLKEIESLDLSMNNLSGK---- 848
                      R L+ + M  N +        +       +E++ LDL  N  +      
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 849 IPAQLASLNFLSVLNLSYNNL 869
           +   L S   L  L L+   L
Sbjct: 236 LAIALKSWPNLRELGLNDCLL 256

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 58/281 (20%), Positives = 94/281 (33%), Gaps = 76/281 (27%)

Query: 382 SIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSV------LFDLDLSGNRLEGPVPIS 435
            IP +L    + + L LS N        + ++ S        L  LDLS   ++  +   
Sbjct: 21  KIPDNLP--FSTKNLDLSFNP-------LRHLGSYSFFSFPELQVLDLSRCEIQT-IEDG 70

Query: 436 IFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWE 495
            +  L +L TL L+ N    L                S L  L   +  ++  + N+   
Sbjct: 71  AYQSLSHLSTLILTGNPIQSL------ALGAF--SGLSSLQKLVAVETNLA-SLENFPIG 121

Query: 496 VGSGNLKFLNLSHNLVVSLQEP---YSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNN 552
                LK LN++HNL+ S + P    +++ +  LDL SN++                   
Sbjct: 122 -HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI------------------- 161

Query: 553 NFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACL 612
              SI                      +  +             LDLS N ++  I    
Sbjct: 162 --QSIYCTD--LRVLH----------QMPLLNLS----------LDLSLNPMN-FIQPGA 196

Query: 613 ITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGN 653
             +    L+ L L  N L  ++ D IF     LQ + L  N
Sbjct: 197 FKEIR--LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 50/234 (21%), Positives = 86/234 (36%), Gaps = 30/234 (12%)

Query: 263 SLPNFPKN--SSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSM-ANLT 319
           +    P N   S ++L LS   L      S  +   L  +++S C     I      +L+
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLS 76

Query: 320 QLFHMDFSSNHFFGPIPSL-----HKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVL 374
            L  +  + N     I SL         +L  L     NL+  + +     L  L+ + +
Sbjct: 77  HLSTLILTGNP----IQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNV 131

Query: 375 GHNSLSGSIPRSLFL-LPNLEMLQLSNNQFENQLPE--ISNVSS--SVLFDLDLSGNRLE 429
            HN +        F  L NLE L LS+N+ ++ +    +  +     +   LDLS N + 
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 430 GPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDN 483
             +    F E+  L  L L +N+   +      P    I    + L  + +  N
Sbjct: 191 F-IQPGAFKEI-RLKELALDTNQLKSV------PDG--IFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 51/305 (16%), Positives = 90/305 (29%), Gaps = 78/305 (25%)

Query: 541 SPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLS 600
                       NF  IP ++                       P       + + LDLS
Sbjct: 6   VVPNITYQCMELNFYKIPDNL-----------------------P------FSTKNLDLS 36

Query: 601 NNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP 660
            N L   + +         L+VL+L R  +  T+ D  +     L  L L+GN +Q +  
Sbjct: 37  FNPLR-HLGSYSFFSFPE-LQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 661 KSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKV--SWPL 718
            + +  + LQ L      ++      + +  +L+ L +  N      S    +   +   
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ---SFKLPEYFSNLTN 150

Query: 719 LQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEI 778
           L+ +DL+ NK                              +                   
Sbjct: 151 LEHLDLSSNKIQ---------------------------SIYCTDLR------------- 170

Query: 779 KLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESL 838
            L ++P +  S+D S N     I     +   L  L +  N L       F  L  ++ +
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229

Query: 839 DLSMN 843
            L  N
Sbjct: 230 WLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 52/237 (21%), Positives = 87/237 (36%), Gaps = 52/237 (21%)

Query: 169 KALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNY--GLSSGTEFLAHLTNLK 226
            +    P LQVL LS C++    +        LS + L  N    L+ G    + L++L+
Sbjct: 46  YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA--FSGLSSLQ 103

Query: 227 ALDLSECGLQGKFPEKIL-HVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSG 285
            L   E  L        + H+ TL+ L+++ N +   S                      
Sbjct: 104 KLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ--SFK-------------------- 140

Query: 286 TLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLN 345
            LP+   NL NL  +++SS          +  L Q+                        
Sbjct: 141 -LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM-------------------PLLNL 180

Query: 346 NLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLF-LLPNLEMLQLSNN 401
           +LDLS N ++      F  + + L+ + L  N L  S+P  +F  L +L+ + L  N
Sbjct: 181 SLDLSLNPMNFIQPGAF--KEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 14/192 (7%)

Query: 521 SGIRFLDLHSNQLRGNIPYMS----PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAA 576
              + LDL  N LR ++   S    P    +D S     +I    G + S +     +  
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIED--GAYQSLSHLSTLILT 84

Query: 577 NNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSD 636
            N +  +   +    ++ Q L     NL+ ++    I    + L+ LN+  N +      
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKT-LKELNVAHNLIQSFKLP 142

Query: 637 TIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV----LDLRSNYISDNFPCWLRNASS 692
             F     L+ LDLS N++Q +    L   + + +    LDL  N ++            
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201

Query: 693 LQVLVLRSNNFS 704
           L+ L L +N   
Sbjct: 202 LKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 35/205 (17%)

Query: 90  NLTNLTYLNLSQGGFAGEIPTEI-SSLTRLVTLDLSGIVPIEYSYTVWIANLS--LFLQN 146
           +   L  L+LS+      I      SL+ L TL L+G           I +L+   F   
Sbjct: 50  SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN---------PIQSLALGAF-SG 98

Query: 147 LTELTELHLDRVDLS--ASGTEWCKALSFLPNLQVLSLSGCDL-SGPINHYLAKSRSLSV 203
           L+ L +L     +L+   +       +  L  L+ L+++   + S  +  Y +   +L  
Sbjct: 99  LSSLQKLVAVETNLASLENF-----PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 204 IRLHYNY--GLSSGTEFLAHLTNLKA----LDLSECGLQGKFPEKILHVPTLETLDLSIN 257
           + L  N    +      L  L  +      LDLS   +             L+ L L  N
Sbjct: 154 LDLSSNKIQSIYCTD--LRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTN 210

Query: 258 QLLQGSLPN--FPKNSSLRDLILSH 280
           QL   S+P+  F + +SL+ + L  
Sbjct: 211 QL--KSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.0 bits (115), Expect = 6e-06
 Identities = 57/294 (19%), Positives = 86/294 (29%), Gaps = 75/294 (25%)

Query: 587 SVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQ 646
            V    N         N    IP  L      + + L+L  N L   L    F     LQ
Sbjct: 3   CVEVVPNITY-QCMELNFY-KIPDNL----PFSTKNLDLSFNPL-RHLGSYSFFSFPELQ 55

Query: 647 ILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGH 706
           +LDLS  ++Q +   +  + + L  L L  N I           SSLQ LV         
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET----- 110

Query: 707 ISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYE 766
                         +  L         + K L               ++      N    
Sbjct: 111 -------------NLASLENFPIGHLKTLKEL---------------NVA----HNL--- 135

Query: 767 VRVTVTVKGIEIKLLKVPNIF------TSIDFSSNNFEGPIPVEMGRFRSL-------YA 813
                      I+  K+P  F        +D SSN  +    +     R L        +
Sbjct: 136 -----------IQSFKLPEYFSNLTNLEHLDLSSNKIQS---IYCTDLRVLHQMPLLNLS 181

Query: 814 LNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 867
           L++S N +    P +F  ++ ++ L L  N L          L  L  + L  N
Sbjct: 182 LDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 44/275 (16%), Positives = 90/275 (32%), Gaps = 59/275 (21%)

Query: 405 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPR 464
             +  I ++  S    L L    L   +P   F  L N+  + +S +    + L   +  
Sbjct: 21  KDIQRIPSLPPS-TQTLKLIETHLRT-IPSHAFSNLPNISRIYVSID----VTLQQLESH 74

Query: 465 AIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIR 524
           +     N S+++ ++I + +    +     +     LKFL + +  +    +   +    
Sbjct: 75  S---FYNLSKVTHIEIRNTRNLTYIDPDALK-ELPLLKFLGIFNTGLKMFPDLTKVYSTD 130

Query: 525 FLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVI 584
              +                      N   TSIP                   N+  G+ 
Sbjct: 131 IFFILEIT-----------------DNPYMTSIPV------------------NAFQGLC 155

Query: 585 PESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPG-DC 643
            E+         L L NN  + ++       + + L+ + L +N     +    F G   
Sbjct: 156 NET-------LTLKLYNNGFT-SVQGYAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 644 GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNY 678
           G  +LD+S   +  +  K L +   L+ L  R+ +
Sbjct: 206 GPSLLDVSQTSVTALPSKGLEH---LKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 38/242 (15%), Positives = 87/242 (35%), Gaps = 43/242 (17%)

Query: 296 NLTRVEVSSCNFTGPIPP-SMANLTQLFHMDFSSNHFFGPIPS--LHKSRNLNNLDLSFN 352
           +   +++   +    IP  + +NL  +  +  S +     + S   +    + ++++   
Sbjct: 32  STQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 353 NLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQLSNNQFENQLPEIS 411
                          NL             I       LP L+ L + N   +   P+++
Sbjct: 91  R--------------NLT-----------YIDPDALKELPLLKFLGIFNTGLKM-FPDLT 124

Query: 412 NVSS-SVLFDLDLSGNRLEGPVPISIFFELRN-LYTLDLSSNKFSRLKLASSKPRAIPIL 469
            V S  + F L+++ N     +P++ F  L N   TL L +N F+ +     +  A    
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-----QGYAF--- 176

Query: 470 KNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLH 529
            N ++L  + ++ N+    +    +         L++S   V +L     +  ++ L   
Sbjct: 177 -NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP-SKGLEHLKELIAR 234

Query: 530 SN 531
           + 
Sbjct: 235 NT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 29/190 (15%), Positives = 65/190 (34%), Gaps = 6/190 (3%)

Query: 521 SGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSL 580
                  +    ++  IP + P+T  +     +  +IP+   + +      Y V+ + +L
Sbjct: 11  HQEEDFRVTCKDIQ-RIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIY-VSIDVTL 68

Query: 581 AGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFP 640
             +   S    +    +++ N      I    + +    L+ L +    L      T   
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL-LKFLGIFNTGLKMFPDLTKVY 127

Query: 641 GDCGLQILDLSGN-QLQGVVPKSLAN-CNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL 698
                 IL+++ N  +  +   +    CN    L L +N  + +   +  N + L  + L
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYL 186

Query: 699 RSNNFSGHIS 708
             N +   I 
Sbjct: 187 NKNKYLTVID 196

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 18/195 (9%)

Query: 521 SGIRFLDLHSNQLRGNIPYMS----PNTSYVD-YSNNNFTSIPADIGNFMSETEYFYFVA 575
              + L L    LR  IP  +    PN S +    +     + +     +S+  +   + 
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE-IR 88

Query: 576 ANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLS 635
              +L  + P+++ +    + L + N  L    P      S+    +L +  N    ++ 
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 636 DTIFPGDCG-LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNA---- 690
              F G C     L L  N    V   +      L  + L  N          ++A    
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVID---KDAFGGV 203

Query: 691 -SSLQVLVLRSNNFS 704
            S   +L +   + +
Sbjct: 204 YSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 34/242 (14%), Positives = 78/242 (32%), Gaps = 45/242 (18%)

Query: 172 SFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLS 231
           S  P+ Q L L    L                        + S     ++L N+  + +S
Sbjct: 28  SLPPSTQTLKLIETHLR----------------------TIPSHA--FSNLPNISRIYVS 63

Query: 232 ECGLQGKFPEKILH-VPTLETLDLSINQLLQGSLPN--FPKNSSLRDLILSHTGLSGTLP 288
                 +      + +  +  +++   + L   +      +   L+ L + +TGL    P
Sbjct: 64  IDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFLGIFNTGLK-MFP 121

Query: 289 D--SIGNLENLTRVEVSSCNFTGPIPPSM-ANLT-QLFHMDFSSNHFFGPIPSLH----K 340
           D   + + +    +E++   +   IP +    L  +   +   +N       S+      
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG----FTSVQGYAFN 177

Query: 341 SRNLNNLDLSFNNLSGGISS-TFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLS 399
              L+ + L+ N     I    F        ++ +   S++ ++P       +L+ L   
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGL--EHLKELIAR 234

Query: 400 NN 401
           N 
Sbjct: 235 NT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 44/239 (18%), Positives = 81/239 (33%), Gaps = 48/239 (20%)

Query: 69  LQSLNLGFTLFKGFQIPSR-LGNLTNLTYLNLSQGGFAGEIPTEI-SSLTRLVTLDLSGI 126
            Q+L L  T  +   IPS    NL N++ + +S      ++ +    +L+++  +++   
Sbjct: 33  TQTLKLIETHLR--TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR-- 88

Query: 127 VPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCD 186
                              N   LT +  D             AL  LP L+ L +    
Sbjct: 89  -------------------NTRNLTYIDPD-------------ALKELPLLKFLGIFNTG 116

Query: 187 LSG-PINHYLAKSRSLSVIRLHYNYGLSS-GTEFLAHLTN-LKALDLSECGLQGKFPEKI 243
           L   P    +  +    ++ +  N  ++S        L N    L L   G         
Sbjct: 117 LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA 175

Query: 244 LHVPTLETLDLSINQLLQGSLPN--FPK-NSSLRDLILSHTGLSGTLPDSI-GNLENLT 298
            +   L+ + L+ N+ L   +    F    S    L +S T ++  LP     +L+ L 
Sbjct: 176 FNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 34/237 (14%), Positives = 75/237 (31%), Gaps = 62/237 (26%)

Query: 644 GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSN----YISDN-FPCWLRNASSLQVLVL 698
             Q L L    L+ +   + +N   +  + +  +     +  + F     N S +  + +
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF----YNLSKVTHIEI 87

Query: 699 RSNNFSGHISCPRNKVSWPL--LQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLG 756
           R+     +++         L  L+ + +              L M    TK  S      
Sbjct: 88  RNTR---NLTYIDPDALKELPLLKFLGIFNTG----------LKMFPDLTKVYS------ 128

Query: 757 IEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEM--GRFRSLYAL 814
                                       +IF  ++ + N +   IPV    G       L
Sbjct: 129 ---------------------------TDIFFILEITDNPYMTSIPVNAFQGLCNETLTL 161

Query: 815 NMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQ-LASL-NFLSVLNLSYNNL 869
            + +N  T S+     N  +++++ L+ N     I       + +  S+L++S  ++
Sbjct: 162 KLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 61/373 (16%), Positives = 129/373 (34%), Gaps = 64/373 (17%)

Query: 206 LHYNYGLSSGT----EFLAHLTNLKALDLSECGLQGKFPEKI---LHVP--TLETLDLSI 256
           ++Y   L  G+    EF +    + +LDLS   L      ++         ++ +L+LS 
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 257 NQLLQGSLPNFPK-----NSSLRDLILSHTGLSGTLPDSIGNL-----ENLTRVEVSSCN 306
           N L   +     +      +++  L LS   LS    D +          +T +++   +
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 307 FTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSG----GISSTF 362
           F+     S +   Q F                +   ++ +L+L  N+L       +    
Sbjct: 121 FS---SKSSSEFKQAF---------------SNLPASITSLNLRGNDLGIKSSDELIQIL 162

Query: 363 WEQLLNLQIVVLGHNSLS----GSIPRSLFLLP-NLEMLQLSNNQFENQ----LPEISNV 413
                N+  + L  N+L+      + + L  +P ++  L LS N    +    L  I + 
Sbjct: 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222

Query: 414 SSSVLFDLDLSGNRL--EGPVPISIFFE-LRNLYTLDLSSNKFSRLKLASSKPRAIPILK 470
             + +  L+L  N L       + +  + L++L T+ L  +    +     K        
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK-ALGAAFP 281

Query: 471 NQSQLSVLDISDNQISGEVPNWIWEV---GSGNLKFLNLSHNLVVSLQEPYSISG----- 522
           N  ++ ++D +  +I       I  +    SG     +L +  ++  Q+  +        
Sbjct: 282 NIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIP 341

Query: 523 --IRFLDLHSNQL 533
             +R        L
Sbjct: 342 DELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 59/388 (15%), Positives = 115/388 (29%), Gaps = 89/388 (22%)

Query: 140 LSLFLQNLTELTELHLDRVDLSASGTEW-CKALSFLP-NLQVLSLSGCDLSGPINHYLAK 197
           +  F      +T L L   +L +  T    +A +  P ++  L+LSG  L    +  L +
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 198 -----SRSLSVIRLHYNYGLSSGTEFLAHL-----TNLKALDLSECGLQGKFPEKILHV- 246
                  +++ + L  N+     ++ L          +  LDL       K   +     
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 247 ----PTLETLDLSINQL-------LQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLE 295
                ++ +L+L  N L       L   L      +++  L L    L+           
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAI--PANVNSLNLRGNNLA----------- 180

Query: 296 NLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLS 355
                             + A L +                      ++ +LDLS N L 
Sbjct: 181 ----------------SKNCAELAKFLA---------------SIPASVTSLDLSANLLG 209

Query: 356 ----GGISSTFWEQLLNLQIVVLGHNSLSGS----IPRSLFLLPNLEMLQLSNNQFENQL 407
                 ++  F     ++  + L  N L G     +      L +L+ + L  +  +N  
Sbjct: 210 LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269

Query: 408 PE----ISNV--SSSVLFDLDLSGNRL--EGPVPISIFFELRN--LYTLDLSSNKFSRLK 457
            E    +     +   +  +D +G  +     +PIS      +       L +     L 
Sbjct: 270 KEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQC---LI 326

Query: 458 LASSKPRAIPILKNQSQLSVLDISDNQI 485
            A      I  L    +L     +   +
Sbjct: 327 FAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 51/330 (15%), Positives = 101/330 (30%), Gaps = 68/330 (20%)

Query: 414 SSSVLFDLDLSGNRLEGPVPISIFFELRN----LYTLDLSSNKFSRLKLASSKPRAIPIL 469
               +  LDLS N L     + +     N    + +L+LS N        +S      + 
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG---FKNSDELVQILA 76

Query: 470 KNQSQLSVLDISDNQISGEVPNWIWEVGSGN---LKFLNLSHN---------LVVSLQEP 517
              + ++ L++S N +S +  + + +  +     +  L+L  N            +    
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 518 YSISGIRFLDLHSNQLRGN------IPYMSPNTS--YVDYSNNNFTSIPADIGNFMSETE 569
            +   I  L+L  N L             +   +   ++   NN  S             
Sbjct: 137 PA--SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA--------- 185

Query: 570 YFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNL--SGTIP-ACLITKSSSTLEVLNLG 626
                     LA  +        +   LDLS N L        A + +   + +  LNL 
Sbjct: 186 ---------ELAKFLASIPA---SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233

Query: 627 RNNLNGTLSDTI---FPGDCGLQILDLSGNQLQGVVPK-------SLANCNMLQVLDLRS 676
            N L+G   + +         LQ + L  + ++ +  +       +  N   + ++D   
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293

Query: 677 NYISDNFPCWLRNA-----SSLQVLVLRSN 701
             I  +    + N          V  L + 
Sbjct: 294 KEIHPSHSIPISNLIRELSGKADVPSLLNQ 323

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.4 bits (139), Expect = 9e-09
 Identities = 55/379 (14%), Positives = 108/379 (28%), Gaps = 78/379 (20%)

Query: 88  LGNLTNLTYLNLSQGGFAGEIPTEISSL-----TRLVTLDLSGIVPIEYSYTVWIANLSL 142
                 +T L+LS          E+          + +L+LSG   + +  +  +    +
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG-NSLGFKNSDELV--QI 74

Query: 143 FLQNLTELTELHLDRVDLSASGTEW-CKALSFLP-NLQVLSLSGCDLSGPINHYLAK--- 197
                  +T L+L    LS   ++   K L+ +P  + VL L   D S   +    +   
Sbjct: 75  LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134

Query: 198 --SRSLSVIRLHYNYGLSSGTEFLA-----HLTNLKALDLSECGLQGKFPEKILHV---- 246
               S++ + L  N      ++ L         N+ +L+L    L  K   ++       
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 247 -PTLETLDLSINQL-------LQGSLPNFPKNSSLRDLILSHTGLSGT----LPDSIGNL 294
             ++ +LDLS N L       L     +    + +  L L    L G     L     +L
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSS--IPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252

Query: 295 ENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNL 354
           ++L  V +               L                  +    + +  +D +   +
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGA----------------AFPNIQKIILVDKNGKEI 296

Query: 355 SGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQF----ENQLPEI 410
               S      +  L                        ++  L N       ++Q    
Sbjct: 297 HPSHSIPISNLIRELSG--------------------KADVPSLLNQCLIFAQKHQTNIE 336

Query: 411 SNVSSSVLFDLDLSGNRLE 429
                  L +   +   L 
Sbjct: 337 DLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 60/324 (18%), Positives = 111/324 (34%), Gaps = 66/324 (20%)

Query: 592 TNFQVLDLSNNNLSGTIPACL---ITKSSSTLEVLNLGRNNLNGT----LSDTIFPGDCG 644
                LDLS NNL       L      + +++  LNL  N+L       L   +      
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 645 LQILDLSGNQL--QGVVP--KSLANCN-MLQVLDLRSNYISDNFPCWLRNA-----SSLQ 694
           +  L+LSGN L  +      K+LA     + VLDL  N  S       + A     +S+ 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 695 VLVLRSNNFSGH---------ISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAE 745
            L LR N+              + P N      +  ++L  N      +   L   + + 
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPAN------VNSLNLRGNNL-ASKNCAELAKFLASI 194

Query: 746 TKSGSEV----NHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPI 801
             S + +    N LG++             +   +      +PN   S++   N   GP 
Sbjct: 195 PASVTSLDLSANLLGLK-------------SYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241

Query: 802 PVEMGRF----RSLYALNMSHNALTG-------SIPSSFGNLKEIESLDLSMNNLSG--- 847
              +       + L  + + ++ +         ++ ++F N+++I  +D +   +     
Sbjct: 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301

Query: 848 -KIPAQLASLNF-LSVLNLSYNNL 869
             I   +  L+    V +L    L
Sbjct: 302 IPISNLIRELSGKADVPSLLNQCL 325

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 47/273 (17%), Positives = 81/273 (29%), Gaps = 61/273 (22%)

Query: 468 ILKNQSQLSVLDISDNQISGEVPNWIWEVGSGN---LKFLNLSHN---------LVVSLQ 515
                  ++ LD+S N +       + +  +     +  LNLS N         LV  L 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 516 EPYSISGIRFLDLHSNQLRGNIPYM-------SPNTS--YVDYSNNNFTSIPADIGNFMS 566
                + +  L+L  N L              +   +   +D   N+F+S  +       
Sbjct: 77  A--IPANVTSLNLSGNFL-SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS------- 126

Query: 567 ETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLS---GTIPACLITKSSSTLEVL 623
                      +              +   L+L  N+L          ++    + +  L
Sbjct: 127 -----------SEFKQAFSNLPA---SITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172

Query: 624 NLGRNNLNGT----LSDTIFPGDCGLQILDLSGNQLQGVVPKSLA-----NCNMLQVLDL 674
           NL  NNL       L+  +      +  LDLS N L       LA       N +  L+L
Sbjct: 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232

Query: 675 RSNYISD----NFPCWLRNASSLQVLVLRSNNF 703
             N +      N      +   LQ + L  +  
Sbjct: 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 54/314 (17%), Positives = 100/314 (31%), Gaps = 64/314 (20%)

Query: 601 NNNLSGTIPACLIT---KSSSTLEVLNLGRNNLNGT----LSDTIFPGDCGLQILDLSGN 653
           N  L+    +  +         +  L+L  NNL       L          +  L+LSGN
Sbjct: 2   NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN 61

Query: 654 QLQGVVPKSLA-----NCNMLQVLDLRSNYISDNFPCWLRNA-----SSLQVLVLRSNNF 703
            L       L          +  L+L  N++S      L         ++ VL L  N+F
Sbjct: 62  SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 704 ---------SGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNH 754
                        + P +      +  ++L  N   G  S   L+ ++ A   +   VN 
Sbjct: 122 SSKSSSEFKQAFSNLPAS------ITSLNLRGNDL-GIKSSDELIQILAAIPAN---VNS 171

Query: 755 LGIEMPSNQFYEVRVTVTVKGIEI--KLLKVPNIF-TSIDFSSNNFEGPIPVEMGRF--- 808
           L +    N           K      K L       TS+D S+N        E+      
Sbjct: 172 LNLR--GNNL-------ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222

Query: 809 --RSLYALNMSHNALTGS----IPSSFGNLKEIESLDLSMNNLSGKIPAQ-------LAS 855
               + +LN+  N L G     +     +LK ++++ L  + +      Q         +
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282

Query: 856 LNFLSVLNLSYNNL 869
           +  + +++ +   +
Sbjct: 283 IQKIILVDKNGKEI 296

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 42/202 (20%), Positives = 79/202 (39%), Gaps = 17/202 (8%)

Query: 62  GLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTL 121
             F    +Q ++L  ++ +   +   L   + L  L+L     +  I   ++  + LV L
Sbjct: 88  EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147

Query: 122 DLSGIVPIEYSYTVWIANLSLF--LQNLTELTELHLDR-VDLSASGTEWCKALSFLPNLQ 178
           +LSG            +  +L   L + + L EL+L    D +    +   A      + 
Sbjct: 148 NLSG--------CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETIT 198

Query: 179 VLSLSGC--DLSGPINHYLAKS-RSLSVIRLHYNYGLS-SGTEFLAHLTNLKALDLSEC- 233
            L+LSG   +L       L +   +L  + L  +  L     +    L  L+ L LS C 
Sbjct: 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258

Query: 234 GLQGKFPEKILHVPTLETLDLS 255
            +  +   ++  +PTL+TL + 
Sbjct: 259 DIIPETLLELGEIPTLKTLQVF 280

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 50/245 (20%), Positives = 77/245 (31%), Gaps = 36/245 (14%)

Query: 137 IANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLA 196
           +        +   +  + L    +  S       LS    LQ LSL G  LS PI + LA
Sbjct: 82  MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI--LSQCSKLQNLSLEGLRLSDPIVNTLA 139

Query: 197 KSRSLSVIRLHYNYGLSSGT--EFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDL 254
           K+ +L  + L    G S       L+  + L  L+LS C                   + 
Sbjct: 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT---------------EK 184

Query: 255 SINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDS-----IGNLENLTRVEVSSC-NFT 308
            +   +            +  L LS  G    L  S     +    NL  +++S      
Sbjct: 185 HVQVAVAHVSET------ITQLNLS--GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236

Query: 309 GPIPPSMANLTQLFHMDFSSNHFFGP--IPSLHKSRNLNNLDLSFNNLSGGISSTFWEQL 366
                    L  L H+  S  +   P  +  L +   L  L +    +  G      E L
Sbjct: 237 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF-GIVPDGTLQLLKEAL 295

Query: 367 LNLQI 371
            +LQI
Sbjct: 296 PHLQI 300

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 63/469 (13%), Positives = 127/469 (27%), Gaps = 68/469 (14%)

Query: 71  SLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEIS-SLTRLVTLDLSGIVPI 129
            +  G+  +    I +   + T L  + L +     +    I+ S      L LS     
Sbjct: 84  LVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC--- 140

Query: 130 EYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALS-FLPNLQVLSLSGCDLS 188
                     L+        L EL L   D+      W         +L  L++S     
Sbjct: 141 ---EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE 197

Query: 189 ---GPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILH 245
                +   + +  +L  ++L+    L      L     L+ L                 
Sbjct: 198 VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY------------ 245

Query: 246 VPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSC 305
                        +  G          LR L      +   LP        LT + +S  
Sbjct: 246 ------TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299

Query: 306 NFTGP----IPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISST 361
                    +      L +L+ +D+  +     +      ++L  L +  +       + 
Sbjct: 300 TVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL--ASTCKDLRELRVFPSEPFVMEPNV 357

Query: 362 ---------FWEQLLNLQIVVLGHNSLSG----SIPRSLFLLPNLEMLQLSNNQFENQLP 408
                           L+ V+     ++     +I R+   +    +  +     +    
Sbjct: 358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417

Query: 409 EISNVSSSVLFD-------LDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASS 461
           E  ++    + +       L LSG  L   V   I    + +  L ++    S L +   
Sbjct: 418 EPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH- 475

Query: 462 KPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSG--NLKFLNLSH 508
                 +L     L  L+I D     +    +    S    ++ L +S 
Sbjct: 476 ------VLSGCDSLRKLEIRDCPFGDK---ALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 62.6 bits (152), Expect = 4e-10
 Identities = 47/337 (13%), Positives = 103/337 (30%), Gaps = 48/337 (14%)

Query: 87  RLGNLTNLTYLNLSQGGFAGEIPTEISS-LTRLVTLDLSGIVPIEYS-------YTVWIA 138
               +       +  G      P  +     ++ +++L G                    
Sbjct: 36  SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYP 95

Query: 139 NLSLFLQNLTELTELHLDRVDLSASGTEWCKALS-FLPNLQVLSLSGCDLSGPINHYLAK 197
            +     + T L E+ L R+ ++       + ++    N +VL LS C+           
Sbjct: 96  WIEAMSSSYTWLEEIRLKRMVVTDDC---LELIAKSFKNFKVLVLSSCE----------- 141

Query: 198 SRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHV----PTLETLD 253
               S        GL++     A   NLK LDL E  +       + H      +L +L+
Sbjct: 142 --GFS------TDGLAA---IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN 190

Query: 254 LSI--NQLLQGSLPNFPKNS-SLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCN---- 306
           +S   +++   +L        +L+ L L+       L   +     L  +          
Sbjct: 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR 250

Query: 307 --FTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKS-RNLNNLDLSFNNLSGGISSTFW 363
                 +  +++   +L  +    +     +P+++     L  L+LS+  +         
Sbjct: 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL 310

Query: 364 EQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSN 400
            Q   LQ + +        +        +L  L++  
Sbjct: 311 CQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.5 bits (149), Expect = 8e-10
 Identities = 60/376 (15%), Positives = 122/376 (32%), Gaps = 55/376 (14%)

Query: 69  LQSLNL-GFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSL----TRLVTLDL 123
            + L L     F    + +      NL  L+L +          +S      T LV+L++
Sbjct: 132 FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI 191

Query: 124 SGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLS 183
           S       +  V  + L   +     L  L L+R   +    +    L   P L+ L   
Sbjct: 192 SC-----LASEVSFSALERLVTRCPNLKSLKLNR---AVPLEKLATLLQRAPQLEELGTG 243

Query: 184 GC------DLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQG 237
           G       D+   ++  L+  + L  +   ++   +      +  + L  L+LS   +Q 
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303

Query: 238 KFPEKIL-HVPTLETLDLSINQLLQGSLPNFPKN-SSLRDLILSHTGLSGTLPDS----- 290
               K+L   P L+ L +  + +    L         LR+L +  +      P+      
Sbjct: 304 YDLVKLLCQCPKLQRLWVL-DYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362

Query: 291 -----IGNLENLTRVEVSSCNFTGP----IPPSMANLTQ--LFHMDFSSNHFFGPIPS-- 337
                      L  V       T      I  +  N+T+  L  ++  +  +    P   
Sbjct: 363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422

Query: 338 -----LHKSRNLNNLDLSFNNLSGGISSTFWEQLL----NLQIVVLGHNSLSGSIPRSLF 388
                +   ++L  L      LSG ++   +E +      ++++ +     S      + 
Sbjct: 423 GFGAIVEHCKDLRRLS-----LSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL 477

Query: 389 L-LPNLEMLQLSNNQF 403
               +L  L++ +  F
Sbjct: 478 SGCDSLRKLEIRDCPF 493

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 55.7 bits (134), Expect = 6e-08
 Identities = 48/300 (16%), Positives = 87/300 (29%), Gaps = 25/300 (8%)

Query: 16  TKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLG 75
            +L             +SG+    +G      LS                   L +LNL 
Sbjct: 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297

Query: 76  FTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTV 135
           +   + + +   L     L  L +        +    S+   L  L +    P      V
Sbjct: 298 YATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357

Query: 136 WIANLSL--FLQNLTELTELHLDRVDLSASGTEWCKALSF-LPNLQVLSLSGCDLSGPIN 192
            +    L        +L  +      ++ +       ++   PN+    L   +   P  
Sbjct: 358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI---TIARNRPNMTRFRLCIIEPKAPDY 414

Query: 193 HYLAKSRSLSVIRLHYNYGLSSGTEFLA-HLTNLKALDLSECGLQGKFPEKIL-HVPTLE 250
             L                L  G   +  H  +L+ L LS   L  K  E I  +   +E
Sbjct: 415 LTLE--------------PLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKME 459

Query: 251 TLDLSINQLLQGSLPNFPKN-SSLRDLILSHTGLSG-TLPDSIGNLENLTRVEVSSCNFT 308
            L ++        + +      SLR L +         L  +   LE +  + +SSC+ +
Sbjct: 460 MLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 76/556 (13%), Positives = 154/556 (27%), Gaps = 136/556 (24%)

Query: 175 PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECG 234
           P ++ + L G       N             +             +  T L+ + L    
Sbjct: 66  PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE---------AMSSSYTWLEEIRLKRMV 116

Query: 235 LQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSH-TGLSGTLPDSIG- 292
           +                 D  +  + +          + + L+LS   G S     +I  
Sbjct: 117 V----------------TDDCLELIAKSF-------KNFKVLVLSSCEGFSTDGLAAIAA 153

Query: 293 NLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNL-DLSF 351
              NL  +++   +        +++                            +L  L+ 
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHF----------------------PDTYTSLVSLNI 191

Query: 352 NNLSGGISSTFWEQLL----NLQIVVLGHNSLSGSIPRSLFLLPNLEMLQL---SNNQFE 404
           + L+  +S +  E+L+    NL+ + L        +   L   P LE L     +     
Sbjct: 192 SCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251

Query: 405 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFE-LRNLYTLDLSSNKFSRLKLASSKP 463
           +    +S   S       LSG     P  +   +     L TL+LS        L     
Sbjct: 252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVK--- 308

Query: 464 RAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSG--NLKFLNLSHNLVVSLQEPYSIS 521
               +L    +L  L + D  I       +  + S   +L+ L +  +    ++   +++
Sbjct: 309 ----LLCQCPKLQRLWVLDY-IEDA---GLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360

Query: 522 --GIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNS 579
             G+  + +   +L             V Y     T                     N +
Sbjct: 361 EQGLVSVSMGCPKLE-----------SVLYFCRQMT---------------------NAA 388

Query: 580 LAGVIPESVCKATNFQVLDLSNNNLSGTIPACL---------ITKSSSTLEVLNLGRNNL 630
           L  +         N     L            L         I +    L  L+L     
Sbjct: 389 LITI----ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL----- 439

Query: 631 NGTLSDT----IFPGDCGLQILDLSGNQLQGVVPKSLA-NCNMLQVLDLRSNYISDN-FP 684
           +G L+D     I      +++L ++      +    +   C+ L+ L++R     D    
Sbjct: 440 SGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL 499

Query: 685 CWLRNASSLQVLVLRS 700
                  +++ L + S
Sbjct: 500 ANASKLETMRSLWMSS 515

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 58/206 (28%), Positives = 87/206 (42%), Gaps = 30/206 (14%)

Query: 248 TLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSI-GNLENLTRVEVSSCN 306
             + LDL  N+L       F + + LR L L+   L  TLP  I   L+NL  + V+   
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 307 FTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQL 366
               +P  +               F   +       NL  L L  N L   +    ++ L
Sbjct: 97  LQA-LPIGV---------------FDQLV-------NLAELRLDRNQLK-SLPPRVFDSL 132

Query: 367 LNLQIVVLGHNSLSGSIPRSLF-LLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSG 425
             L  + LG+N L  S+P+ +F  L +L+ L+L NNQ + ++PE +    + L  L L  
Sbjct: 133 TKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDN 190

Query: 426 NRLEGPVPISIFFELRNLYTLDLSSN 451
           N+L+  VP   F  L  L  L L  N
Sbjct: 191 NQLKR-VPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 45/189 (23%), Positives = 77/189 (40%), Gaps = 14/189 (7%)

Query: 521 SGI----RFLDLHSNQLRGNIPYMS----PNTSYVDYSNNNFTSIPADIGNFMSETEYFY 572
           S I    + LDL SN+L  ++P  +         +  ++N   ++PA I   +   E  +
Sbjct: 33  SNIPADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91

Query: 573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNG 632
               +N L  +      +  N   L L  N L  ++P  +    +  L  L+LG N L  
Sbjct: 92  V--TDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTK-LTYLSLGYNELQ- 146

Query: 633 TLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASS 692
           +L   +F     L+ L L  NQL+ V   +      L+ L L +N +         +   
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206

Query: 693 LQVLVLRSN 701
           L++L L+ N
Sbjct: 207 LKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 12/184 (6%)

Query: 500 NLKFLNLSHNLVVSLQEP--YSISGIRFLDLHSNQLR---GNIPYMSPNTSYVDYSNNNF 554
           + K L+L  N + SL     + ++ +R L L+ N+L+     I     N   +  ++N  
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 555 TSIPADIGNFMSETEYFYFVAANNSLAGVIPESVC-KATNFQVLDLSNNNLSGTIPACLI 613
            ++P  + + +            N L   +P  V    T    L L  N L  ++P  + 
Sbjct: 98  QALPIGVFDQLVNLAELRL--DRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153

Query: 614 TKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLD 673
            K +S L+ L L  N L   + +  F     L+ L L  NQL+ V   +  +   L++L 
Sbjct: 154 DKLTS-LKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 674 LRSN 677
           L+ N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 49/210 (23%), Positives = 97/210 (46%), Gaps = 39/210 (18%)

Query: 341 SRNLNNLDLSFNNLS---GGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEML 396
           + N N++D S   L+     I +       + + + L  N LS S+P   F  L  L +L
Sbjct: 15  NNNKNSVDCSSKKLTAIPSNIPA-------DTKKLDLQSNKLS-SLPSKAFHRLTKLRLL 66

Query: 397 QLSNNQFENQLPEISNVSSSV------LFDLDLSGNRLEGPVPISIFFELRNLYTLDLSS 450
            L++N+       +  + + +      L  L ++ N+L+  +PI +F +L NL  L L  
Sbjct: 67  YLNDNK-------LQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDR 118

Query: 451 NKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNL 510
           N+   L      P  +    + ++L+ L +  N++   +P  +++    +LK L L +N 
Sbjct: 119 NQLKSL------PPRVF--DSLTKLTYLSLGYNELQ-SLPKGVFD-KLTSLKELRLYNNQ 168

Query: 511 VVSLQEPY--SISGIRFLDLHSNQLRGNIP 538
           +  + E     ++ ++ L L +NQL+  +P
Sbjct: 169 LKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 51/209 (24%), Positives = 72/209 (34%), Gaps = 60/209 (28%)

Query: 199 RSLSVIRLHYNY--GLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPT-LETLDLS 255
             L ++ L+ N    L +G      L NL+ L +++  LQ   P  +      L  L L 
Sbjct: 61  TKLRLLYLNDNKLQTLPAGI--FKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117

Query: 256 INQLLQGSLPN--FPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPP 313
            NQL   SLP   F   + L  L L +  L  +LP  +               F      
Sbjct: 118 RNQL--KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV---------------FDK---- 155

Query: 314 SMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVV 373
               LT                       +L  L L  N L       F ++L  L+ + 
Sbjct: 156 ----LT-----------------------SLKELRLYNNQLKRVPEGAF-DKLTELKTLK 187

Query: 374 LGHNSLSGSIPRSLF-LLPNLEMLQLSNN 401
           L +N L   +P   F  L  L+MLQL  N
Sbjct: 188 LDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 17/163 (10%)

Query: 145 QNLTELTELHLDRVDLSA--SGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLS 202
             LT+L  L+L+   L    +G         L NL+ L ++   L         +  +L+
Sbjct: 58  HRLTKLRLLYLNDNKLQTLPAG-----IFKELKNLETLWVTDNKLQALPIGVFDQLVNLA 112

Query: 203 VIRLHYNY--GLSSGTEFLAHLTNLKALDLSECGLQGKFPEKIL-HVPTLETLDLSINQL 259
            +RL  N    L         LT L  L L    LQ   P+ +   + +L+ L L  NQL
Sbjct: 113 ELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL 169

Query: 260 LQGSLPN--FPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRV 300
               +P   F K + L+ L L +  L      +  +LE L  +
Sbjct: 170 --KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 8/157 (5%)

Query: 547 VDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSG 606
           VD      T IP ++                N++  + P +       + +DLSNN +S 
Sbjct: 16  VDCRGKGLTEIPTNLP---ETITEIRL--EQNTIKVIPPGAFSPYKKLRRIDLSNNQIS- 69

Query: 607 TIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANC 666
            +         S L  L L  N +   L  ++F G   LQ+L L+ N++  +   +  + 
Sbjct: 70  ELAPDAFQGLRS-LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL 127

Query: 667 NMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNF 703
           + L +L L  N +            ++Q + L  N F
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 10/143 (6%)

Query: 536 NIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVC-KATNF 594
           N+P      + +    N    IP   G F    +      +NN ++  +         + 
Sbjct: 29  NLP---ETITEIRLEQNTIKVIPP--GAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSL 82

Query: 595 QVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ 654
             L L  N ++  +P  L     S L++L L  N +N  L    F     L +L L  N+
Sbjct: 83  NSLVLYGNKIT-ELPKSLFEGLFS-LQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNK 139

Query: 655 LQGVVPKSLANCNMLQVLDLRSN 677
           LQ +   + +    +Q + L  N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 16/152 (10%)

Query: 382 SIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELR 441
            IP +L     +  ++L  N  +  +P  +      L  +DLS N++   +    F  LR
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLR 80

Query: 442 NLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNL 501
           +L +L L  NK + L      P++  + +    L +L ++ N+I+  +    ++    NL
Sbjct: 81  SLNSLVLYGNKITEL------PKS--LFEGLFSLQLLLLNANKIN-CLRVDAFQ-DLHNL 130

Query: 502 KFLNLSHNLVVSLQEP--YSISGIRFLDLHSN 531
             L+L  N + ++ +     +  I+ + L  N
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 34/163 (20%)

Query: 247 PTLETLDLSINQLLQGSLPN--FPKNSSLRDLILSHTGLSGTLPDSI-GNLENLTRVEVS 303
            T+  + L  N +    +P   F     LR + LS+  +S  L       L +L  + + 
Sbjct: 32  ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88

Query: 304 SCNFTGPIPPSM-ANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTF 362
               T  +P S+   L  L  +  ++N     I  L           +F +L        
Sbjct: 89  GNKITE-LPKSLFEGLFSLQLLLLNANK----INCLRVD--------AFQDLH------- 128

Query: 363 WEQLLNLQIVVLGHNSLSGSIPRSLF-LLPNLEMLQLSNNQFE 404
                NL ++ L  N L  +I +  F  L  ++ + L+ N F 
Sbjct: 129 -----NLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFI 165

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 7e-09
 Identities = 77/527 (14%), Positives = 157/527 (29%), Gaps = 147/527 (27%)

Query: 514 LQEPYSISGIRFL--DLHSNQ-----------LRGNIPYMSPNTSYVDYSNNNFTSIPAD 560
           +    ++SG   L   L S Q           LR N  ++               S+   
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE----QRQPSMMTR 110

Query: 561 IGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLIT------ 614
              ++ + +  Y     N        +V +   +  L      L    PA  +       
Sbjct: 111 --MYIEQRDRLY-----NDNQVFAKYNVSRLQPYLKL---RQALLELRPAKNVLIDGVLG 160

Query: 615 --KSSSTLEVLNLGRNN-LNGTLSDTIF---PGDCGL--QILDLSGNQLQGVVPKSLANC 666
             K+   L+V     +  +   +   IF     +C     +L++    L  + P   +  
Sbjct: 161 SGKTWVALDVC---LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 667 NMLQVLDLRSNYISD---NFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVD 723
           +    + LR + I              + L  LVL       ++   +           +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLL------NVQNAK------AWNAFN 263

Query: 724 LACNKFSGRLSQKWLLT---MMVAETKSGSEVNHLGIEMPSNQFYEVRV-TVTVKGIEIK 779
           L+C         K LLT     V +  S +   H+ ++  S       V ++ +K ++ +
Sbjct: 264 LSC---------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 780 LLKVPNIFTSIDFSSNNFEGPIPVEM-------GRFRSLYALNMSHNALTGSIPSSFGNL 832
              +P    + +        P  + +       G        +++ + LT  I SS   L
Sbjct: 315 PQDLPREVLTTN--------PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 833 KEIES----LDLSMNNLSGKIPAQLASLNFLSVL--NLSYNNLVGKIPTSTQLQSFSPTS 886
           +  E       LS+   S  IP  L     LS++  ++  ++ V  +    +L  +S   
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTIL-----LSLIWFDVIKSD-VMVV--VNKLHKYSLVE 418

Query: 887 YEGNKGLYG-PPLTNESQARPPELP--------------------PSPPPASSGEID--W 923
            +  +     P +  E + +                           PP      +D  +
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY-----LDQYF 473

Query: 924 F-FIA---MSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFR 966
           +  I     +I             +F       + D   +F+ ++ R
Sbjct: 474 YSHIGHHLKNIEHPERMT------LFR----MVFLDF--RFLEQKIR 508

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 8e-06
 Identities = 104/670 (15%), Positives = 205/670 (30%), Gaps = 199/670 (29%)

Query: 323 HMDFSSN---HFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSL 379
           HMDF +    + +  I S+ +   ++N D    ++     S   ++ ++  I++      
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFD--CKDVQDMPKSILSKEEID-HIIMSKDA-- 60

Query: 380 SGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFE 439
              +  +L L   L   Q      +  + E+  ++   L    +   + +  +   ++ E
Sbjct: 61  ---VSGTLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMS-PIKTEQRQPSMMTRMYIE 114

Query: 440 LRN-LYTLDLSSNKFSRLKLASSKPRAIPILKNQSQL-------------------SVLD 479
            R+ LY     +  F++  +     R  P LK +  L                   + + 
Sbjct: 115 QRDRLYN---DNQVFAKYNV----SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 480 IS---DNQISGEVPN---WIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQL 533
           +      ++  ++     W+      NLK  N    ++  LQ            L     
Sbjct: 168 LDVCLSYKVQCKMDFKIFWL------NLKNCNSPETVLEMLQ-----------KLLYQ-- 208

Query: 534 RGNIPYMSPN-TSYVDYSNN---NFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVC 589
                 + PN TS  D+S+N      SI A++   +    Y       N L  ++  +V 
Sbjct: 209 ------IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY------ENCL--LVLLNVQ 254

Query: 590 KATNFQVLDLSNNNLSGTIPAC---LITKSSSTLEVLNLGR------NNLNGTL----SD 636
            A  +   +LS          C   L T+     + L+         ++ + TL      
Sbjct: 255 NAKAWNAFNLS----------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 637 TIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCW---------- 686
           ++      L+ LD     L    P+ +   N    L + +  I D    W          
Sbjct: 305 SLL-----LKYLDCRPQDL----PREVLTTNPR-RLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 687 LRNASSLQVLVLRSNNFSGH-ISC---PRN-KVSWPLLQI---------VDLACNKFSGR 732
           L       + VL    +          P +  +   LL +         V +  NK    
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 733 -LSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLL---KVPNIFT 788
            L +K          K  +      I +PS              +   ++    +P  F 
Sbjct: 415 SLVEKQ--------PKEST------ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 789 SIDFSSNNFEGPI---------PVEMGR----FRSLYALNMS-------HNAL----TGS 824
           S D      +             +E       FR ++ L+         H++     +GS
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-LDFRFLEQKIRHDSTAWNASGS 519

Query: 825 IPSSFGNLKEIES------------LDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGK 872
           I ++   LK  +             ++  ++ L  KI   L    +  +L ++       
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP-KIEENLICSKYTDLLRIALMAEDEA 578

Query: 873 I--PTSTQLQ 880
           I      Q+Q
Sbjct: 579 IFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-05
 Identities = 84/608 (13%), Positives = 163/608 (26%), Gaps = 184/608 (30%)

Query: 252 LDLSINQLLQGSLPNFPKNSSLRDL------ILSHTGLSGTL--PDSIGNL--------- 294
                  +L      F  N   +D+      ILS   +   +   D++            
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 295 --ENLTRVEVSSC---NF--------TGPIPPSMANLTQLFHMD--FSSNHFFGP--IPS 337
             E + +  V      N+        T    PSM     +   D  ++ N  F    +  
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 338 LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQ---IVVL------GHNSLSGSIPRSLF 388
           L     L                     LL L+    V++      G   ++  +  S  
Sbjct: 134 LQPYLKLRQA------------------LLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 389 LLPNLEM----LQLSNNQFENQLPEISNVSSSVLFDLDLSGN-RLEGPVPISIFFELRNL 443
           +   ++     L L N      + E+      +L+ +D +   R +    I         
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQ---KLLYQIDPNWTSRSDHSSNIK-------- 224

Query: 444 YTLDLSSNKFSRLKLASSKPRAIPIL---KNQSQLSVLDIS--------DNQISGEVPNW 492
             +     +  RL  +      + +L   +N    +  ++S          Q++  +   
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL--- 281

Query: 493 IWEVGSGNLKFLNLSHNLVVSLQEPYSIS------GIRFLDLHSNQLRGN------IPYM 540
                +     ++L H+ + +L      S        R  DL    L  N      I   
Sbjct: 282 ----SAATTTHISLDHHSM-TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 541 ---SPNTS--YVDYSNNNFTSIPADIGNFMSETEYF-YFVAANNSLA----GV-IPESV- 588
                 T   +   + +  T+I     N +   EY   F      L+       IP  + 
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD----RLSVFPPSAHIPTILL 392

Query: 589 ----------------CKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNG 632
                            K   + +++      + +IP+  +           L R+ ++ 
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 633 -TLSDTIFPGDCGLQILD----------LSGNQ-----------------LQGVVPKSLA 664
             +  T    D     LD          L   +                 L+  +     
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 665 NC-------NMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWP 717
                    N LQ L     YI DN P + R  +++        +F        N +   
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL-------DFL--PKIEENLICSK 563

Query: 718 LLQIVDLA 725
              ++ +A
Sbjct: 564 YTDLLRIA 571

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 55/416 (13%), Positives = 116/416 (27%), Gaps = 130/416 (31%)

Query: 17  KLSQWSSHQSS-----DCCDWS-----GVRC------------DEAGHVIGLDLSWEPII 54
           +L +   +++      +  +        + C            D         +S +   
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 55  GGL--ENATGLF---------DL--QYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQ 101
             L  +    L          DL  + L +     ++     I   L    N  ++N  +
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDGLATWDNWKHVNCDK 354

Query: 102 GGFAGEIPTEISSLTRLVTLDLSGIVPIEYS--YT--------VWI--ANLSLFLQNLTE 149
                        LT ++   L+ + P EY   +           I    LSL   ++ +
Sbjct: 355 -------------LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 150 ------LTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGP-----INHYLAK- 197
                 + +LH      S    +  ++   +P++ +      +         ++HY    
Sbjct: 402 SDVMVVVNKLH----KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 198 ---SRSLSVIRL-HYNYGLSSGTEFLA-HLTNLKALDLSECGLQGKFPEKILHVPTLETL 252
              S  L    L  Y Y        +  HL N++  +         F   +        L
Sbjct: 458 TFDSDDLIPPYLDQYFY------SHIGHHLKNIEHPERMT-----LFR-MVF-------L 498

Query: 253 DLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIP 312
           D             F +        + H   +     SI N   L +++     +   I 
Sbjct: 499 DF-----------RFLEQK------IRHDSTAWNASGSILNT--LQQLK----FYKPYIC 535

Query: 313 PSMANLTQLFH--MDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQL 366
            +     +L +  +DF          +L  S+  + L ++       I     +Q+
Sbjct: 536 DNDPKYERLVNAILDFLPKI----EENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 18/119 (15%)

Query: 346 NLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQLSNNQFE 404
            L L+ N  +   ++  +++L  L+ +   +N ++  I    F     +  + L++N+  
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNR-- 92

Query: 405 NQLPEISNVSSSVLFD-------LDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRL 456
                + NV   + F        L L  NR+   V    F  L ++  L L  N+ + +
Sbjct: 93  -----LENVQHKM-FKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTV 144

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 7/142 (4%)

Query: 536 NIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQ 595
           +IP     T+ +  +NN FT + A  G F    +      +NN +  +   +   A+   
Sbjct: 29  HIP---QYTAELRLNNNEFTVLEAT-GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84

Query: 596 VLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQL 655
            + L++N L   +   +     S L+ L L  N +   + +  F G   +++L L  NQ+
Sbjct: 85  EILLTSNRLE-NVQHKMFKGLES-LKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI 141

Query: 656 QGVVPKSLANCNMLQVLDLRSN 677
             V P +    + L  L+L +N
Sbjct: 142 TTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 9/162 (5%)

Query: 543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKA-TNFQVLDLSN 601
             + VD SN     IP  I      T        NN    +    + K     + ++ SN
Sbjct: 12  EGTTVDCSNQKLNKIPEHIP---QYTAELRL--NNNEFTVLEATGIFKKLPQLRKINFSN 66

Query: 602 NNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPK 661
           N ++  I       +S  +  + L  N L   +   +F G   L+ L L  N++  V   
Sbjct: 67  NKIT-DIEEGAFEGASG-VNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGND 123

Query: 662 SLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNF 703
           S    + +++L L  N I+   P       SL  L L +N F
Sbjct: 124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 12/116 (10%)

Query: 421 LDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDI 480
           L L+ N         IF +L  L  ++ S+NK + +     +  A    +  S ++ + +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-----EEGA---FEGASGVNEILL 88

Query: 481 SDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEP--YSISGIRFLDLHSNQLR 534
           + N++   V + +++ G  +LK L L  N +  +       +S +R L L+ NQ+ 
Sbjct: 89  TSNRLE-NVQHKMFK-GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 25/123 (20%), Positives = 55/123 (44%), Gaps = 16/123 (13%)

Query: 445 TLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFL 504
            L L++N+F+ L        A  I K   QL  ++ S+N+I+ ++    +E G+  +  +
Sbjct: 36  ELRLNNNEFTVL-------EATGIFKKLPQLRKINFSNNKIT-DIEEGAFE-GASGVNEI 86

Query: 505 NLSHNLVVSLQEP--YSISGIRFLDLHSNQLRGNIPYMS----PNTSYVDYSNNNFTSIP 558
            L+ N + ++Q      +  ++ L L SN++   +   S     +   +   +N  T++ 
Sbjct: 87  LLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVA 145

Query: 559 ADI 561
              
Sbjct: 146 PGA 148

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 27/151 (17%), Positives = 58/151 (38%), Gaps = 17/151 (11%)

Query: 263 SLPNFPKN--SSLRDLILSHTGLSGTLPDSI-GNLENLTRVEVSSCNFTGPIPPSM-ANL 318
            L   P++      +L L++   +      I   L  L ++  S+   T  I        
Sbjct: 22  KLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGA 80

Query: 319 TQLFHMDFSSNHFFGPIPSLHKS-----RNLNNLDLSFNNLSGGISSTFWEQLLNLQIVV 373
           + +  +  +SN     + ++         +L  L L  N ++   + +F   L +++++ 
Sbjct: 81  SGVNEILLTSNR----LENVQHKMFKGLESLKTLMLRSNRITCVGNDSF-IGLSSVRLLS 135

Query: 374 LGHNSLSGSIPRSLF-LLPNLEMLQLSNNQF 403
           L  N ++ ++    F  L +L  L L  N F
Sbjct: 136 LYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 15/148 (10%)

Query: 337 SLHKSRNLNNLDLSFNNLS--GGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLE 394
           +L   +   +L LS NN+     +S      + NL+I+ LG N +   I     +   LE
Sbjct: 43  TLSTLKACKHLALSTNNIEKISSLSG-----MENLRILSLGRNLIK-KIENLDAVADTLE 96

Query: 395 MLQLSNNQFENQLPEISNVSS-SVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKF 453
            L +S NQ  +    +S +     L  L +S N++     I     L  L  L L+ N  
Sbjct: 97  ELWISYNQIAS----LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152

Query: 454 SRLKLASSKPRA--IPILKNQSQLSVLD 479
                 ++      I ++K    L  LD
Sbjct: 153 YNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 21/148 (14%)

Query: 374 LGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSS-SVLFDLDLSGNRLEGPV 432
                +   +  +L  L   + L LS N  E    +IS++S    L  L L  N ++   
Sbjct: 32  GMIPPIEK-MDATLSTLKACKHLALSTNNIE----KISSLSGMENLRILSLGRNLIKK-- 84

Query: 433 PISIFFELRN-LYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPN 491
            I     + + L  L +S N+ + L            ++    L VL +S+N+I+     
Sbjct: 85  -IENLDAVADTLEELWISYNQIASLS----------GIEKLVNLRVLYMSNNKIT-NWGE 132

Query: 492 WIWEVGSGNLKFLNLSHNLVVSLQEPYS 519
                    L+ L L+ N + +  +  +
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENN 160

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 19/124 (15%)

Query: 584 IPESVCKATNFQVLDLSNNNLSGTIPACLITK-----SSSTLEVLNLGRNNLNGTLSDTI 638
           +  ++      + L LS NN         I K         L +L+LGRN +     + +
Sbjct: 40  MDATLSTLKACKHLALSTNN---------IEKISSLSGMENLRILSLGRNLI--KKIENL 88

Query: 639 FPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISD-NFPCWLRNASSLQVLV 697
                 L+ L +S NQ+  +    +     L+VL + +N I++      L     L+ L+
Sbjct: 89  DAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146

Query: 698 LRSN 701
           L  N
Sbjct: 147 LAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 39/197 (19%), Positives = 65/197 (32%), Gaps = 53/197 (26%)

Query: 69  LQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSG--I 126
            + + L   +    ++ + L  L    +L LS      +I + +S +  L  L L    I
Sbjct: 25  AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLI 82

Query: 127 VPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCD 186
             IE        NL      L EL         +S +       +  L NL+VL +S   
Sbjct: 83  KKIE--------NLDAVADTLEEL--------WISYNQIASLSGIEKLVNLRVLYMSNNK 126

Query: 187 LSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEK---- 242
           ++           +   I            + LA L  L+ L L+   L   + E     
Sbjct: 127 IT-----------NWGEI------------DKLAALDKLEDLLLAGNPLYNDYKENNATS 163

Query: 243 ------ILHVPTLETLD 253
                 +  +P L+ LD
Sbjct: 164 EYRIEVVKRLPNLKKLD 180

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 14/140 (10%)

Query: 541 SPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLS 600
           +     VD    +  S+P+ I    ++TE       +  LA +   +    T    L+L 
Sbjct: 13  NEGKKEVDCQGKSLDSVPSGIP---ADTEKLDL--QSTGLATLSDATFRGLTKLTWLNLD 67

Query: 601 NNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP 660
            N L  T+ A  +    + L  L L  N L  +L   +F     L  L L GNQL+ +  
Sbjct: 68  YNQLQ-TLSAG-VFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPS 124

Query: 661 K---SLANCNMLQVLDLRSN 677
                L     L+ L L +N
Sbjct: 125 GVFDRLTK---LKELRLNTN 141

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 10/156 (6%)

Query: 526 LDLHSNQLRGNIPYM---SPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAG 582
           LDL S  L              ++++   N   ++ A + + ++E        ANN LA 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL--ANNQLA- 96

Query: 583 VIPESV-CKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPG 641
            +P  V    T    L L  N L  ++P+ +  + +  L+ L L  N L  ++    F  
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTK-LKELRLNTNQLQ-SIPAGAFDK 153

Query: 642 DCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSN 677
              LQ L LS NQLQ V   +      LQ + L  N
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 46/208 (22%), Positives = 77/208 (37%), Gaps = 56/208 (26%)

Query: 346 NLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLF-LLPNLEMLQLSNNQFE 404
            LDL    L+  +S   +  L  L  + L +N L  ++   +F  L  L  L L+NNQ  
Sbjct: 39  KLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 405 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRL------KL 458
           +                          +P+ +F  L  L  L L  N+   L      +L
Sbjct: 97  S--------------------------LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130

Query: 459 ASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPY 518
                          +L  L ++ NQ+   +P   ++    NL+ L+LS N + S+    
Sbjct: 131 T--------------KLKELRLNTNQLQ-SIPAGAFD-KLTNLQTLSLSTNQLQSVPHGA 174

Query: 519 --SISGIRFLDLHSNQL---RGNIPYMS 541
              +  ++ + L  NQ    R  I Y+S
Sbjct: 175 FDRLGKLQTITLFGNQFDCSRCEILYLS 202

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 16/162 (9%)

Query: 250 ETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSI-GNLENLTRVEVSSCNFT 308
           E LDL    L   S   F   + L  L L +  L  TL   +  +L  L  + +++    
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 309 GPIPPSM-ANLTQLFHMDFSSNHFFGPIPSL-----HKSRNLNNLDLSFNNLSGGISSTF 362
             +P  +  +LTQL  +    N     + SL      +   L  L L+ N L    +  F
Sbjct: 97  S-LPLGVFDHLTQLDKLYLGGNQ----LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151

Query: 363 WEQLLNLQIVVLGHNSLSGSIPRSLF-LLPNLEMLQLSNNQF 403
            ++L NLQ + L  N L  S+P   F  L  L+ + L  NQF
Sbjct: 152 -DKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 27/126 (21%), Positives = 39/126 (30%), Gaps = 21/126 (16%)

Query: 595 QVLDLSNNNLSGTIPACL--ITKSSSTLEVLNLGRNNLNGT----LSDTIFPGDCGLQIL 648
             ++L++  L    PA L  +         L L  N+L       L D +    C +  L
Sbjct: 104 DEVNLASCQLD---PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTL 160

Query: 649 DLSGNQLQGVVPKSLA-----NCNMLQVLDLRSNYISDNFPCW-----LRNASSLQVLVL 698
            LS N L       L      N + +  L L    + D          L     LQ L +
Sbjct: 161 RLSNNPLTAAGVAVLMEGLAGNTS-VTHLSLLHTGLGDEG-LELLAAQLDRNRQLQELNV 218

Query: 699 RSNNFS 704
             N   
Sbjct: 219 AYNGAG 224

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 46/309 (14%), Positives = 82/309 (26%), Gaps = 51/309 (16%)

Query: 342 RNLNNLDLSFNNLSGGISSTFWEQLL----NLQIVVLGHNSLSGSIPRSLF-LLPNLEML 396
            +L  L+L+   ++    +     L      L  V L    L  +  R+L  +      L
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131

Query: 397 QLSNNQFENQ----LPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELR---NLYTLDLS 449
            L  N    +    L ++       +  L LS N L       +   L    ++  L L 
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191

Query: 450 SNKFSR---LKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGN--LKFL 504
                      LA+        L    QL  L+++ N         +      +  L+ L
Sbjct: 192 HTGLGDEGLELLAAQ-------LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELL 244

Query: 505 NLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNF 564
           +L  N +       S  G + L        G           V  +              
Sbjct: 245 HLYFNEL-------SSEGRQVLRDLGGAAEGGA------RVVVSLTEGTAV--------- 282

Query: 565 MSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLIT---KSSSTLE 621
            SE           +L       V +     + DL ++    T+         +    + 
Sbjct: 283 -SEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRG-ATLNPWRKAQLLRVEGEVR 340

Query: 622 VLNLGRNNL 630
            L     + 
Sbjct: 341 ALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 57/344 (16%), Positives = 96/344 (27%), Gaps = 84/344 (24%)

Query: 139 NLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFL-----PNLQVLSLSGCDLSGPINH 193
           N     + L+ L +L+L  V ++      C  ++ +       L  ++L+ C L      
Sbjct: 63  NQRFSAEVLSSLRQLNLAGVRMTPVK---CTVVAAVLGSGRHALDEVNLASCQLD----- 114

Query: 194 YLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKI---LHVP--T 248
                    +  L            L      + L L    L  +  + +   L      
Sbjct: 115 ------PAGLRTL------------LPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQ 156

Query: 249 LETLDLSINQL-------LQGSLPNFPKNSSLRDLILSHTGLSGT----LPDSIGNLENL 297
           + TL LS N L       L   L     N+S+  L L HTGL       L   +     L
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAG---NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL 213

Query: 298 TRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLS-- 355
             + V+          +   L +                +  +  +L  L L FN LS  
Sbjct: 214 QELNVAYNGAG---DTAALALAR----------------AAREHPSLELLHLYFNELSSE 254

Query: 356 --GGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNV 413
               +           ++VV      + S   S+ L      L   +     +  E    
Sbjct: 255 GRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLE---- 310

Query: 414 SSSVLFDLDLSGNRL--EGPVPISIFFEL-RNLYTLDLSSNKFS 454
               L   DL  +R     P   +    +   +  L        
Sbjct: 311 ----LLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 46/319 (14%), Positives = 94/319 (29%), Gaps = 69/319 (21%)

Query: 392 NLEMLQLSNNQFENQ----LPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLD 447
           +L  L L+  +        +  +       L +++L+  +L+     ++         L 
Sbjct: 73  SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132

Query: 448 LSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGN--LKFLN 505
           L  N    L   + K     +L +Q Q++ L +S+N ++      + E  +GN  +  L+
Sbjct: 133 LQLN---SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS 189

Query: 506 LSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFM 565
           L H     L +     G+  L   + QL  N          ++ + N      A      
Sbjct: 190 LLHT---GLGD----EGLELL---AAQLDRN-----RQLQELNVAYNGAGDTAA------ 228

Query: 566 SETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGT-----IPACLITKSSSTL 620
                        +LA    E      + ++L L  N LS              +  + +
Sbjct: 229 ------------LALARAAREH----PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARV 272

Query: 621 EVLNLGRNNL--------------NGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANC 666
            V       +                +           L + DL  ++   + P   A  
Sbjct: 273 VVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQL 332

Query: 667 ----NMLQVLDLRSNYISD 681
                 ++ L  +      
Sbjct: 333 LRVEGEVRALLEQLGSSGS 351

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 18/130 (13%)

Query: 592 TNFQVLDLSNNNL--SGTIPACLITKSSSTLEVLNLGRNNLNGT----LSDTIFPGDCGL 645
                L LSNN L  +G          ++++  L+L    L       L+  +   +  L
Sbjct: 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL-DRNRQL 213

Query: 646 QILDLSGNQLQGVVPKSLA----NCNMLQVLDLRSNYISDNFPCWL-------RNASSLQ 694
           Q L+++ N        +LA        L++L L  N +S      L          + + 
Sbjct: 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVV 273

Query: 695 VLVLRSNNFS 704
           V +      S
Sbjct: 274 VSLTEGTAVS 283

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 10/103 (9%)

Query: 612 LITKSSSTLEVLNLGRNNLNG----TLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN 667
              +  S+L  LNL    +       ++  +  G   L  ++L+  QL     ++L    
Sbjct: 66  FSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF 125

Query: 668 M-LQVLDLRSNYISDNFPCWL-----RNASSLQVLVLRSNNFS 704
           +  + L L+ N +       L      +   +  L L +N  +
Sbjct: 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT 168

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 7/117 (5%)

Query: 586 ESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGL 645
                A   + LDL    +   I    +  +    + ++   N +   L    FP    L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIEN--LGATLDQFDAIDFSDNEIR-KLDG--FPLLRRL 66

Query: 646 QILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISD-NFPCWLRNASSLQVLVLRSN 701
           + L ++ N++  +          L  L L +N + +      L +  SL  L +  N
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 5/123 (4%)

Query: 335 IPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLE 394
                 +     LDL    +   I +     L     +    N +   +     LL  L+
Sbjct: 12  AAQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLK 67

Query: 395 MLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFS 454
            L ++NN+    + E  + +   L +L L+ N L     +     L++L  L +  N  +
Sbjct: 68  TLLVNNNRICR-IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

Query: 455 RLK 457
             K
Sbjct: 127 NKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 18/129 (13%)

Query: 390 LPNLEMLQLSNNQFENQLPEISNVSSSV--LFDLDLSGNRLEGPVPISIFFELRNLYTLD 447
                 L L   +    +P I N+ +++     +D S N +     +  F  LR L TL 
Sbjct: 18  AVRDRELDLRGYK----IPVIENLGATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLL 70

Query: 448 LSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLS 507
           +++N+  R+           + +    L+ L +++N +  E+ +        +L +L + 
Sbjct: 71  VNNNRICRIGEG--------LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCIL 121

Query: 508 HNLVVSLQE 516
            N V + + 
Sbjct: 122 RNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 30/120 (25%)

Query: 596 VLDLSNNNLSGTIPACLITKSSS-----TLEVLNLGRN------NLNGTLSDTIFPGDCG 644
           ++ L+           LI +++          L+L         NL  TL          
Sbjct: 1   MVKLTAE---------LIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQ-------- 43

Query: 645 LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS 704
              +D S N+++ +          L+ L + +N I        +    L  L+L +N+  
Sbjct: 44  FDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 27/148 (18%)

Query: 313 PSMANLTQLFHMDFSSNHFFGPIPSL----HKSRNLNNLDLSFNNLSGGISSTFWEQLLN 368
               N  +   +D         IP +          + +D S N +        +  L  
Sbjct: 13  AQYTNAVRDRELDLRGYK----IPVIENLGATLDQFDAIDFSDNEIR---KLDGFPLLRR 65

Query: 369 LQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSS-SVLFDLDLSGNR 427
           L+ +++ +N +          LP+L  L L+NN     L ++  ++S   L  L +  N 
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRN- 123

Query: 428 LEGPVPIS--------IFFELRNLYTLD 447
                P++        + +++  +  LD
Sbjct: 124 -----PVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 27/141 (19%), Positives = 63/141 (44%), Gaps = 22/141 (15%)

Query: 395 MLQLSNNQFENQLPEISNVSSSV-LFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKF 453
           M++L+       + + +  +++V   +LDL G ++   V  ++   L     +D S N+ 
Sbjct: 1   MVKLT----AELIEQAAQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI 54

Query: 454 SRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVS 513
            +L          P+L+    L  L +++N+I   +   + +    +L  L L++N +V 
Sbjct: 55  RKL-------DGFPLLRR---LKTLLVNNNRIC-RIGEGLDQALP-DLTELILTNNSLVE 102

Query: 514 LQEPYSISGI---RFLDLHSN 531
           L +   ++ +    +L +  N
Sbjct: 103 LGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 219 LAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLIL 278
             +    + LDL    +          +   + +D S N++    L  FP    L+ L++
Sbjct: 15  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLV 71

Query: 279 SHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHM 324
           ++  +          L +LT + +++ +        + +L  L  +
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLV-----ELGDLDPLASL 112

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 808 FRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 867
                A++ S N +   +   F  L+ +++L ++ N +         +L  L+ L L+ N
Sbjct: 41  LDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

Query: 868 NL 869
           +L
Sbjct: 99  SL 100

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 24/116 (20%), Positives = 37/116 (31%), Gaps = 3/116 (2%)

Query: 612 LITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV 671
           L  ++ + +  L L     N    + +      L+ L L    L  V   +L     L+ 
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKK 75

Query: 672 LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACN 727
           L+L  N I            +L  L L  N     IS          L+ +DL   
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 8/144 (5%)

Query: 343 NLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQ 402
            +  L L     + G       + +NL+ + L +  L  S+  +L  LP L+ L+LS N+
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELSENR 82

Query: 403 FENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSK 462
               L  ++    + L  L+LSGN+L+    +    +L  L +LDL + + + L     +
Sbjct: 83  IFGGLDMLAEKLPN-LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN--DYR 139

Query: 463 PRAIPILKNQSQLSVLDISDNQIS 486
                +L    QL+ LD  D +  
Sbjct: 140 ESVFKLLP---QLTYLDGYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 15/128 (11%)

Query: 409 EISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPI 468
           E+ N + + + +L L   +        +  E  NL  L L +               +  
Sbjct: 17  ELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----------VSN 66

Query: 469 LKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGI---RF 525
           L    +L  L++S+N+I G   + + E    NL  LNLS N +  +     +  +   + 
Sbjct: 67  LPKLPKLKKLELSENRIFG-GLDMLAE-KLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124

Query: 526 LDLHSNQL 533
           LDL + ++
Sbjct: 125 LDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 7/107 (6%)

Query: 596 VLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQL 655
           VLD   +N         +T     LE L+L    L  ++S+   P    L+ L+LS N++
Sbjct: 30  VLDNCKSNDGKIEG---LTAEFVNLEFLSLINVGLI-SVSN--LPKLPKLKKLELSENRI 83

Query: 656 QGVVPKSLANCNMLQVLDLRSNYISD-NFPCWLRNASSLQVLVLRSN 701
            G +         L  L+L  N + D +    L+    L+ L L + 
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 16/129 (12%)

Query: 390 LPNLEMLQLSNNQFENQLPEISNVSSSV--LFDLDLSGNRLEGPVPISIFFELRNLYTLD 447
              +  L L N +  +   +I  +++    L  L L    L     +S   +L  L  L+
Sbjct: 23  PAAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLE 77

Query: 448 LSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLS 507
           LS N+               + +    L+ L++S N++  ++           LK L+L 
Sbjct: 78  LSENRIFGGL--------DMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLF 128

Query: 508 HNLVVSLQE 516
           +  V +L +
Sbjct: 129 NCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 293 NLENLTRVEVSSCNFT-GPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSF 351
               +  + + +C    G I    A    L  +   +      + +L K   L  L+LS 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSE 80

Query: 352 NNLSGGISSTFWEQLLNLQIVVLGHNSLSG-SIPRSLFLLPNLEMLQLSNN 401
           N +  G      E+L NL  + L  N L   S    L  L  L+ L L N 
Sbjct: 81  NRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 34/143 (23%), Positives = 48/143 (33%), Gaps = 29/143 (20%)

Query: 139 NLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKS 198
           +L L  +    + EL LD    +    E     +   NL+ LSL    L           
Sbjct: 15  HLELRNRTPAAVRELVLDNCKSNDGKIE--GLTAEFVNLEFLSLINVGLIS--------- 63

Query: 199 RSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQ 258
                               L  L  LK L+LSE  + G        +P L  L+LS N+
Sbjct: 64  -----------------VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106

Query: 259 L-LQGSLPNFPKNSSLRDLILSH 280
           L    +L    K   L+ L L +
Sbjct: 107 LKDISTLEPLKKLECLKSLDLFN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 23/122 (18%)

Query: 342 RNLNNLDLSFNNLS--GGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLS 399
            NL  L L    L     +      +L  L+ + L  N + G +      LPNL  L LS
Sbjct: 49  VNLEFLSLINVGLISVSNL-----PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103

Query: 400 NNQFENQLPEISNVSS-SVLFDLDLSGNRLEGPVPIS--------IFFELRNLYTLDLSS 450
            N+ ++ +  +  +     L  LDL          ++        +F  L  L  LD   
Sbjct: 104 GNKLKD-ISTLEPLKKLECLKSLDLFNC------EVTNLNDYRESVFKLLPQLTYLDGYD 156

Query: 451 NK 452
            +
Sbjct: 157 RE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 38/147 (25%), Positives = 55/147 (37%), Gaps = 19/147 (12%)

Query: 111 EISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKA 170
             +++  LV LD       +      I  L+    NL  L         L   G      
Sbjct: 22  TPAAVRELV-LDNCKSNDGK------IEGLTAEFVNLEFL--------SLINVGLISVSN 66

Query: 171 LSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNY-GLSSGTEFLAHLTNLKALD 229
           L  LP L+ L LS   + G ++    K  +L+ + L  N     S  E L  L  LK+LD
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126

Query: 230 LSECGLQGK--FPEKIL-HVPTLETLD 253
           L  C +     + E +   +P L  LD
Sbjct: 127 LFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 806 GRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLS 865
             F +L  L++ +  L  S+ S+   L +++ L+LS N + G +      L  L+ LNLS
Sbjct: 46  AEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103

Query: 866 YNNL 869
            N L
Sbjct: 104 GNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 31/132 (23%), Positives = 43/132 (32%), Gaps = 25/132 (18%)

Query: 222 LTNLKALDLSECGLQ-GKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSH 280
              ++ L L  C    GK          LE L L    L+  S+ N PK   L+ L LS 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSE 80

Query: 281 TGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHK 340
             + G L      L NLT + +S           ++ L  L  +                
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLK-----DISTLEPLKKL---------------- 119

Query: 341 SRNLNNLDLSFN 352
              L +LDL   
Sbjct: 120 -ECLKSLDLFNC 130

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 46/179 (25%), Positives = 65/179 (36%), Gaps = 16/179 (8%)

Query: 504 LNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSP-NTSYVDYSNNNFTSIPADIG 562
            NL    V        ++ I  +  +++ ++         N  Y+    N    I A   
Sbjct: 24  ANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--- 80

Query: 563 NFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEV 622
                T   Y +   N L  +      K TN + L L  N L  ++P   +    + L  
Sbjct: 81  -LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDG-VFDKLTNLTY 137

Query: 623 LNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQ----GVVPKSLANCNMLQVLDLRSN 677
           LNL  N L  +L   +F     L  LDLS NQLQ    GV  K L     L+ L L  N
Sbjct: 138 LNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK-LTQ---LKDLRLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 34/140 (24%), Positives = 49/140 (35%), Gaps = 17/140 (12%)

Query: 541 SPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLS 600
              T   +    + T                  +A N+ +  V  + +    N + L L 
Sbjct: 18  FAETIKANLKKKSVTDAVT----QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALG 71

Query: 601 NNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGV-- 658
            N L   I A    K  + L  L L  N L  +L + +F     L+ L L  NQLQ +  
Sbjct: 72  GNKLH-DISAL---KELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPD 126

Query: 659 -VPKSLANCNMLQVLDLRSN 677
            V   L N   L  L+L  N
Sbjct: 127 GVFDKLTN---LTYLNLAHN 143

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 53/207 (25%)

Query: 335 IPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLF-LLPNL 393
             + ++  +++ +  + +++    S    + L N++ + LG N L   I       L NL
Sbjct: 34  AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNKLH-DIS--ALKELTNL 87

Query: 394 EMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKF 453
             L L+ NQ +  LP       + L +L L  N+L+  +P  +F +L NL  L+L+ N+ 
Sbjct: 88  TYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQL 145

Query: 454 SRL------KLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLS 507
             L      KL              + L+ LD+S NQ+   +P  +++      K   L 
Sbjct: 146 QSLPKGVFDKL--------------TNLTELDLSYNQLQ-SLPEGVFD------KLTQLK 184

Query: 508 HNLVVSLQEPYSISGIRFLDLHSNQLR 534
                             L L+ NQL+
Sbjct: 185 D-----------------LRLYQNQLK 194

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 38/186 (20%), Positives = 80/186 (43%), Gaps = 18/186 (9%)

Query: 478 LDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNI 537
            ++    ++ +           ++  +  +++ + S+Q    +  +R+L L  N+L  +I
Sbjct: 24  ANLKKKSVT-DAVTQN---ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-DI 78

Query: 538 PYMS--PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQ 595
             +    N +Y+  + N   S+P  + + ++  +        N L  +      K TN  
Sbjct: 79  SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL--VENQLQSLPDGVFDKLTNLT 136

Query: 596 VLDLSNNNLSGTIPACL---ITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG 652
            L+L++N L  ++P  +   +T     L  L+L  N L  +L + +F     L+ L L  
Sbjct: 137 YLNLAHNQLQ-SLPKGVFDKLTN----LTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQ 190

Query: 653 NQLQGV 658
           NQL+ V
Sbjct: 191 NQLKSV 196

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.7 bits (123), Expect = 6e-07
 Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 4/105 (3%)

Query: 325 DFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIP 384
             + +     +  L  + NL  L +        +       L  L+ + +  + L   + 
Sbjct: 14  RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVA 72

Query: 385 RSLFL-LPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRL 428
              F   P L  L LS N  E+   +     S  L +L LSGN L
Sbjct: 73  PDAFHFTPRLSRLNLSFNALESLSWKTVQGLS--LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 4e-06
 Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 4/117 (3%)

Query: 587 SVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQ 646
             C       L  + +         L    +  L  L +        L      G   L+
Sbjct: 3   DACCPHGSSGLRCTRDGAL-DSLHHL--PGAENLTELYIENQQHLQHLELRDLRGLGELR 59

Query: 647 ILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNF 703
            L +  + L+ V P +      L  L+L  N +       ++   SLQ LVL  N  
Sbjct: 60  NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 4/107 (3%)

Query: 584 IPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDC 643
               +  A N   L + N      +    +      L  L + ++ L   ++   F    
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGE-LRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 644 GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYIS-DNFPCWLRN 689
            L  L+LS N L+ +  K++   + LQ L L  N +       WL+ 
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQR 126

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 8e-05
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 11/103 (10%)

Query: 107 EIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTE 166
           +    +     L  L +     +++     +    L  + L EL  L + +  L     +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQH-----LELRDL--RGLGELRNLTIVKSGLRFVAPD 74

Query: 167 WCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYN 209
              A  F P L  L+LS   L   ++    +  SL  + L  N
Sbjct: 75  ---AFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 3/101 (2%)

Query: 256 INQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPD-SIGNLENLTRVEVSSCNFTGPIPP- 313
                  SL + P   +L +L + +      L    +  L  L  + +        + P 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 314 SMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNL 354
           +     +L  ++ S N          +  +L  L LS N L
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 809 RSLYALNMSHNALTGSIPS-SFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 867
            +L  L + +      +       L E+ +L +  + L    P        LS LNLS+N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 868 NLVGKIPTSTQLQSFSPTS 886
            L      S   ++    S
Sbjct: 91  AL-----ESLSWKTVQGLS 104

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 612 LITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV 671
           L  ++ S ++ L L  +  N    + +      L+ L      L  +   +L   N L+ 
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKK 68

Query: 672 LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS 704
           L+L  N +S           +L  L L  N   
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 343 NLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQ 402
           ++  L L  +  + G      ++   L+ +   +  L+ SI  +L  L  L+ L+LS+N+
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDNR 75

Query: 403 FENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLK 457
               L  ++    + L  L+LSGN+++    I    +L NL +LDL + + + L 
Sbjct: 76  VSGGLEVLAEKCPN-LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 596 VLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQL 655
           VLD S +N  G +           LE L+     L  ++++   P    L+ L+LS N++
Sbjct: 23  VLDNSRSNE-GKLEGLTDEFEE--LEFLSTINVGLT-SIAN--LPKLNKLKKLELSDNRV 76

Query: 656 QGVVPKSLANCNMLQVLDLRSNYISD-NFPCWLRNASSLQVLVLRSN 701
            G +      C  L  L+L  N I D +    L+   +L+ L L + 
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 293 NLENLTRVEVSSCNFT-GPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSF 351
              ++  + + +     G +        +L  +   +      I +L K   L  L+LS 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-IANLPKLNKLKKLELSD 73

Query: 352 NNLSGGISSTFWEQLLNLQIVVLGHNSLSG-SIPRSLFLLPNLEMLQLSNN 401
           N +S G      E+  NL  + L  N +   S    L  L NL+ L L N 
Sbjct: 74  NRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 15/126 (11%)

Query: 409 EISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPI 468
           E+ N + S + +L L  +R        +  E   L  L   +   +           I  
Sbjct: 10  ELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS----------IAN 59

Query: 469 LKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGI---RF 525
           L   ++L  L++SDN++SG +          NL  LNLS N +  L     +  +   + 
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEV--LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117

Query: 526 LDLHSN 531
           LDL + 
Sbjct: 118 LDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 16/127 (12%)

Query: 392 NLEMLQLSNNQFENQLPEISNVSSSV--LFDLDLSGNRLEGPVPISIFFELRNLYTLDLS 449
           +++ L L N++  +   ++  ++     L  L      L     I+   +L  L  L+LS
Sbjct: 18  DVKELVLDNSR--SNEGKLEGLTDEFEELEFLSTINVGLTS---IANLPKLNKLKKLELS 72

Query: 450 SNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN 509
            N+ S             + +    L+ L++S N+I  ++          NLK L+L + 
Sbjct: 73  DNRVSGG--------LEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNC 123

Query: 510 LVVSLQE 516
            V +L +
Sbjct: 124 EVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 807 RFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSY 866
            F  L  L+  +  LT SI ++   L +++ L+LS N +SG +         L+ LNLS 
Sbjct: 40  EFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97

Query: 867 NNL 869
           N +
Sbjct: 98  NKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 221 HLTNLKALDLSECGLQ-GKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILS 279
             +++K L L       GK          LE L      L   S+ N PK + L+ L LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELS 72

Query: 280 HTGLSGTLPDSIGNLENLTRVEVSSCNFT 308
              +SG L        NLT + +S     
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 23/117 (19%)

Query: 342 RNLNNLDLSFNNLS--GGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLS 399
             L  L      L+    +       L  L+ + L  N +SG +       PNL  L LS
Sbjct: 42  EELEFLSTINVGLTSIANLPK-----LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 400 NNQFENQLPEISNVSS-SVLFDLDLSGNRLEGPVPIS--------IFFELRNLYTLD 447
            N+ ++ L  I  +     L  LDL          ++        +F  L  L  LD
Sbjct: 97  GNKIKD-LSTIEPLKKLENLKSLDLFNC------EVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 37/145 (25%), Positives = 51/145 (35%), Gaps = 19/145 (13%)

Query: 113 SSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALS 172
           S +  LV LD S     +      +  L+   + L  L             G      L 
Sbjct: 17  SDVKELV-LDNSRSNEGK------LEGLTDEFEELEFL--------STINVGLTSIANLP 61

Query: 173 FLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNY-GLSSGTEFLAHLTNLKALDLS 231
            L  L+ L LS   +SG +     K  +L+ + L  N     S  E L  L NLK+LDL 
Sbjct: 62  KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

Query: 232 ECGLQGKF---PEKILHVPTLETLD 253
            C +             +P L  LD
Sbjct: 122 NCEVTNLNDYRENVFKLLPQLTYLD 146

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 9/155 (5%)

Query: 547 VDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSG 606
           VD  +    S+PA I    +  +  Y    +N +  + P       N + L L +N L  
Sbjct: 24  VDCRSKRHASVPAGIP---TNAQILYL--HDNQITKLEPGVFDSLINLKELYLGSNQLG- 77

Query: 607 TIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANC 666
            +P   +  S + L VL+LG N L   L   +F     L+ L +  N+L   +P+ +   
Sbjct: 78  ALPVG-VFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERL 134

Query: 667 NMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSN 701
             L  L L  N +           SSL    L  N
Sbjct: 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 2e-06
 Identities = 40/278 (14%), Positives = 73/278 (26%), Gaps = 26/278 (9%)

Query: 226 KALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSG 285
              + ++ G      E    +              +  +    K    + L        G
Sbjct: 56  LIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIG 115

Query: 286 TLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLN 345
                  +  ++    V +                    + S        P L     LN
Sbjct: 116 XWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLN 175

Query: 346 NLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLF--LLPNLEMLQL----S 399
           NL +   N    +S        NL+ + +    L  S+   +    LPNLE L L     
Sbjct: 176 NLKIKGTN---NLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVE 231

Query: 400 NNQFENQLPEISNVSSSV----LFDLDLSGNRL--EGPVPISIFFELRNLYTLDLSSNKF 453
           +  F+  +     + S      L  L +                  L  L T+D+S+   
Sbjct: 232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291

Query: 454 SR---LKLASSKPRAIPILKNQSQLSVLDISDNQISGE 488
           +      L          +     L  +++  N +S E
Sbjct: 292 TDEGARLLLDH-------VDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 2e-05
 Identities = 27/177 (15%), Positives = 50/177 (28%), Gaps = 32/177 (18%)

Query: 66  LQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEI--SSLTRLVTLDL 123
           L  +  LN    +     +        NL  L +  GG    +  +I  S L  L  L L
Sbjct: 168 LDAMPLLN-NLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226

Query: 124 SGIVPIEYSYTVWIANLSLFLQN--LTELTELHLDRVDLSASGTEWCKALS---FLPNLQ 178
              V  +Y +   +              L  L +     +       +       LP L+
Sbjct: 227 YVGVE-DYGFDGDMNVFRPLFSKDRFPNLKWLGIVD---AEEQNVVVEMFLESDILPQLE 282

Query: 179 VLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGL 235
            + +S   L+                      G     + +  + +LK +++    L
Sbjct: 283 TMDISAGVLTDE--------------------GARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 7e-05
 Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 21/128 (16%)

Query: 595 QVLDLSNNNLSGTIPACLITKSSSTLEVLNL--GRNNLNG---------TLSDTIFPGDC 643
           + L++ +  L  ++   ++      LE L L  G  +              S   FP   
Sbjct: 196 KSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP--- 252

Query: 644 GLQILDLSGNQLQGVVPKSLANCNM---LQVLDLRSNYISDN----FPCWLRNASSLQVL 696
            L+ L +   + Q VV +     ++   L+ +D+ +  ++D         +     L+ +
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312

Query: 697 VLRSNNFS 704
            ++ N  S
Sbjct: 313 NMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.4 bits (101), Expect = 3e-04
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 806 GRFRSLYALNMSHNALTGSIPSSFGN---LKEIESLDLSMNNLSGK----IPAQLASLNF 858
            RF +L  L +        +   F     L ++E++D+S   L+ +    +   +  +  
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 859 LSVLNLSYNNL 869
           L  +N+ YN L
Sbjct: 309 LKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 3e-04
 Identities = 37/278 (13%), Positives = 75/278 (26%), Gaps = 61/278 (21%)

Query: 115 LTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFL 174
           L  L  + +          +     +    +       L    +D       W +     
Sbjct: 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIE----- 160

Query: 175 PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECG 234
                           ++  L     L+ +++     LS G        NLK+L++   G
Sbjct: 161 -------------QVDLSPVLDAMPLLNNLKIKGTNNLSIG---KKPRPNLKSLEIISGG 204

Query: 235 LQGKFPEKIL--HVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIG 292
           L     E IL   +P LE L L +         ++  +  +          S        
Sbjct: 205 LPDSVVEDILGSDLPNLEKLVLYVGV------EDYGFDGDMNVF---RPLFSKD------ 249

Query: 293 NLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFN 352
              NL  + +        +         L                      L  +D+S  
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDIL--------------------PQLETMDISAG 289

Query: 353 NLSGGISSTFWEQL---LNLQIVVLGHNSLSGSIPRSL 387
            L+   +    + +    +L+ + + +N LS  + + L
Sbjct: 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 4e-04
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 22/90 (24%)

Query: 593 NFQVLDLSNNNLSGTIPACLIT-KSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLS 651
           N + L + +      +    +       LE +++    L           D G ++L   
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL----------TDEGARLL--- 299

Query: 652 GNQLQGVVPKSLANCNMLQVLDLRSNYISD 681
                      +     L+ ++++ NY+SD
Sbjct: 300 --------LDHVDKIKHLKFINMKYNYLSD 321

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 6e-04
 Identities = 31/205 (15%), Positives = 62/205 (30%), Gaps = 17/205 (8%)

Query: 6   ILSNDSGFPSTKLSQWSSHQSSDCCDWSGVRCDEAGHVIGL-DLSWEPIIGGLENATGLF 64
           I+ N   F   +   W      +       + D +  +  +  L+   I G    + G  
Sbjct: 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK 190

Query: 65  DLQYLQSLNLGFTLFKGFQIPS-RLGNLTNLTYLNLSQG--GFAGEIPTEI-------SS 114
               L+SL +         +      +L NL  L L  G   +  +    +         
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 115 LTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTE-WCKALSF 173
              L  L +             +  + L    L +L  + +    L+  G       +  
Sbjct: 251 FPNLKWLGIVD-----AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305

Query: 174 LPNLQVLSLSGCDLSGPINHYLAKS 198
           + +L+ +++    LS  +   L KS
Sbjct: 306 IKHLKFINMKYNYLSDEMKKELQKS 330

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 138 ANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCD-LSGPINHYLA 196
            +L     +  ++  +      + + G +  + L     ++ + L  C  +       L+
Sbjct: 51  NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGL---QYVEKIRLCKCHYIEDGCLERLS 107

Query: 197 K----SRSLSVIRLHYNYGLS-SGTEFLAHLTNLKALDLSEC 233
           +     +S+  + +     ++  G   L H  NLK L LS+ 
Sbjct: 108 QLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 547 VDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKA-TNFQVLDLSNNNLS 605
           VD +      IP DI      T        +N L  +  + +     +   L+L  N L+
Sbjct: 13  VDCTGRGLKEIPRDIP---LHTTELLL--NDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 606 GTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLAN 665
             I       +S  ++ L LG N +   +S+ +F G   L+ L+L  NQ+  V+P S  +
Sbjct: 68  -GIEPNAFEGASH-IQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

Query: 666 CNMLQVLDLRSN 677
            N L  L+L SN
Sbjct: 125 LNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 4/107 (3%)

Query: 346 NLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLF-LLPNLEMLQLSNNQFE 404
            L L+ N L    S   + +L +L  + L  N L+  I  + F    +++ LQL  N+ +
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK 91

Query: 405 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSN 451
             +     +    L  L+L  N++   V    F  L +L +L+L+SN
Sbjct: 92  E-ISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 9/131 (6%)

Query: 547 VDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSG 606
           V  SN     +P  I     +    Y     N    ++P+ +    +  ++DLSNN +S 
Sbjct: 15  VRCSNKGLKVLPKGIP---RDVTELYL--DGNQFT-LVPKELSNYKHLTLIDLSNNRIS- 67

Query: 607 TIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANC 666
           T+     +  +  L  L L  N L   +    F G   L++L L GN +  V   +  + 
Sbjct: 68  TLSNQSFSNMTQ-LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL 125

Query: 667 NMLQVLDLRSN 677
           + L  L + +N
Sbjct: 126 SALSHLAIGAN 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 16/135 (11%)

Query: 547 VDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSG 606
           V+  +   TS+P  I    ++T Y       NSL  +      + T+   L L  N L  
Sbjct: 12  VECYSQGRTSVPTGIP---AQTTYLDL--ETNSLKSLPNGVFDELTSLTQLYLGGNKLQ- 65

Query: 607 TIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQ----GVVPKS 662
           ++P   +    ++L  LNL  N L  +L + +F     L+ L L+ NQLQ    GV  K 
Sbjct: 66  SLPNG-VFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDK- 122

Query: 663 LANCNMLQVLDLRSN 677
           L     L+ L L  N
Sbjct: 123 LTQ---LKDLRLYQN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 346 NLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLF-LLPNLEMLQLSNNQFE 404
            L+L  N L   +    +++L  L  + L  N +  S+P  +F  L  L +L L  N+ +
Sbjct: 32  RLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89

Query: 405 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSN 451
           + LP       + L +L L  N+L+  VP  IF  L +L  + L +N
Sbjct: 90  S-LPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	967
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.34
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.28
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.21
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.05
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.67
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.64
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.59
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.52
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.32
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.31
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.29
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.91
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.78
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.09
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.8
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.48
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.29

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.6e-87  Score=819.84  Aligned_cols=688  Identities=30%  Similarity=0.450  Sum_probs=450.5

Q ss_pred             CCCCcCCCCCCCCCCCcccceeEeCCCCcEEEEECCCCCcccc---cCCCCCCcCCCCCCeeeCCCCCCCCCCCCccccC
Q 046844           14 PSTKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGG---LENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGN   90 (967)
Q Consensus        14 ~~~~l~~w~~~~~~~~c~w~gv~C~~~~~v~~L~L~~~~l~g~---~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~   90 (967)
                      ||.++++|  +.++|||+|+||+|+ .+||++|+|++..+.|.   +  ++++.++++|++++++.+.+.  .+|+.+++
T Consensus        26 ~~~~l~~W--~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l--~~~l~~L~~L~~l~~~~~~~~--~l~~~~~~   98 (768)
T 3rgz_A           26 DKNLLPDW--SSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAV--SSSLLSLTGLESLFLSNSHIN--GSVSGFKC   98 (768)
T ss_dssp             CTTSSTTC--CTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHH--HHHTTTCTTCCEEECTTSCEE--ECCCCCCC
T ss_pred             CcccccCC--CCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCcc--ChhHhccCcccccCCcCCCcC--CCchhhcc
Confidence            44489999  677899999999998 68999999999999988   7  678999999999999998875  46788999


Q ss_pred             CCCCCEEeCCCCCCCccCCh--hccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHH
Q 046844           91 LTNLTYLNLSQGGFAGEIPT--EISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWC  168 (967)
Q Consensus        91 l~~L~~L~Ls~~~~~~~lp~--~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~  168 (967)
                      +++|++|+|++|.+.+.+|.  .++++++|++|++++|..                                        
T Consensus        99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l----------------------------------------  138 (768)
T 3rgz_A           99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL----------------------------------------  138 (768)
T ss_dssp             CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE----------------------------------------
T ss_pred             CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCcc----------------------------------------
Confidence            99999999999999998988  889999999999887521                                        


Q ss_pred             HHhcCCCCccEEEccCCCCCCCCcccc-cCCCCCCEEEccCCCCCCcchhh---hcCCCCCCEEeccCCCCCCccchhcc
Q 046844          169 KALSFLPNLQVLSLSGCDLSGPINHYL-AKSRSLSVIRLHYNYGLSSGTEF---LAHLTNLKALDLSECGLQGKFPEKIL  244 (967)
Q Consensus       169 ~~l~~l~~L~~L~Ls~~~l~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~  244 (967)
                                         .+..|..+ .++++|++|++++|.+.+..+..   +.++++|++|++++|.+.+..+.  .
T Consensus       139 -------------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~  197 (768)
T 3rgz_A          139 -------------------DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--S  197 (768)
T ss_dssp             -------------------ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--T
T ss_pred             -------------------CCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--c
Confidence                               11111111 33444444444444444444444   45566666666666666544432  4


Q ss_pred             CCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEE
Q 046844          245 HVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHM  324 (967)
Q Consensus       245 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  324 (967)
                      .+++|++|++++|.+.. ..+.+..+++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|..  .+++|++|
T Consensus       198 ~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L  274 (768)
T 3rgz_A          198 RCVNLEFLDVSSNNFST-GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL  274 (768)
T ss_dssp             TCTTCCEEECCSSCCCS-CCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred             cCCcCCEEECcCCcCCC-CCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence            55666666666655432 2223555566666666666666666666666666666766666666555543  56666666


Q ss_pred             EccCccccccCcccccc--CcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChh-ccCCCCCCEEeCcCC
Q 046844          325 DFSSNHFFGPIPSLHKS--RNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRS-LFLLPNLEMLQLSNN  401 (967)
Q Consensus       325 ~L~~n~l~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n  401 (967)
                      ++++|.+++.+|.....  ++|++|++++|.+++.+|.. ++.+++|++|++++|.+.+.+|.. +..+++|++|++++|
T Consensus       275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred             ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence            66666666555543321  35666666666555555554 555555666666655555555543 555555555555555


Q ss_pred             cCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCC-CCCEEECCCCcccccccCCCCCccCCC-CCC--CCCccE
Q 046844          402 QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELR-NLYTLDLSSNKFSRLKLASSKPRAIPI-LKN--QSQLSV  477 (967)
Q Consensus       402 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~~~~~ip~-l~~--~~~L~~  477 (967)
                      ++.+                         .+|..+ ..++ +|++|++++|+++         +.+|. +..  +++|++
T Consensus       354 ~l~~-------------------------~~p~~l-~~l~~~L~~L~Ls~N~l~---------~~~~~~~~~~~~~~L~~  398 (768)
T 3rgz_A          354 EFSG-------------------------ELPESL-TNLSASLLTLDLSSNNFS---------GPILPNLCQNPKNTLQE  398 (768)
T ss_dssp             EEEE-------------------------CCCTTH-HHHTTTCSEEECCSSEEE---------EECCTTTTCSTTCCCCE
T ss_pred             ccCc-------------------------cccHHH-HhhhcCCcEEEccCCCcC---------CCcChhhhhcccCCccE
Confidence            5544                         344433 3333 5666666666554         22222 222  456666


Q ss_pred             EECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCC
Q 046844          478 LDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSI  557 (967)
Q Consensus       478 L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i  557 (967)
                      |++++|++++.+|..+....                        +|++|++++|++++.+|..                 
T Consensus       399 L~L~~n~l~~~~p~~l~~l~------------------------~L~~L~Ls~N~l~~~~p~~-----------------  437 (768)
T 3rgz_A          399 LYLQNNGFTGKIPPTLSNCS------------------------ELVSLHLSFNYLSGTIPSS-----------------  437 (768)
T ss_dssp             EECCSSEEEEECCGGGGGCT------------------------TCCEEECCSSEEESCCCGG-----------------
T ss_pred             EECCCCccccccCHHHhcCC------------------------CCCEEECcCCcccCcccHH-----------------
Confidence            66666666666665554321                        2333333333333222210                 


Q ss_pred             CcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCC
Q 046844          558 PADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDT  637 (967)
Q Consensus       558 ~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~  637 (967)
                         +. .++.++.  |++++|.+.+.+|..+..+++|++|++++|++++.+|..+..+.  +|++|+|++|++++.+|..
T Consensus       438 ---l~-~l~~L~~--L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~p~~  509 (768)
T 3rgz_A          438 ---LG-SLSKLRD--LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT--NLNWISLSNNRLTGEIPKW  509 (768)
T ss_dssp             ---GG-GCTTCCE--EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT--TCCEEECCSSCCCSCCCGG
T ss_pred             ---Hh-cCCCCCE--EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC--CCCEEEccCCccCCcCChH
Confidence               00 0111111  33333444444445555566666666666666666666655554  6666666666666666655


Q ss_pred             CCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCC-c--------------
Q 046844          638 IFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSN-N--------------  702 (967)
Q Consensus       638 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N-~--------------  702 (967)
                       |..+++|++|+|++|++++.+|..+..+++|++||+++|+++|.+|.++.....+..+++..+ +              
T Consensus       510 -~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (768)
T 3rgz_A          510 -IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH  588 (768)
T ss_dssp             -GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred             -HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccc
Confidence             556666666666666666666666666666666666666666666666655544443333221 0              


Q ss_pred             -------cceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEcc
Q 046844          703 -------FSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKG  775 (967)
Q Consensus       703 -------l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  775 (967)
                             +.|..  +..+..++.++.++++.|.+.|.+|.                                        
T Consensus       589 ~~~~~~~~~~~~--~~~~~~l~~~~~~~l~~~~~~g~~~~----------------------------------------  626 (768)
T 3rgz_A          589 GAGNLLEFQGIR--SEQLNRLSTRNPCNITSRVYGGHTSP----------------------------------------  626 (768)
T ss_dssp             SSEEEEECTTCC--GGGGGGGGGTCCSCTTSCEEEEECCC----------------------------------------
T ss_pred             cccccccccccc--chhhhccccccccccccceecccCch----------------------------------------
Confidence                   11111  22333334444445555555544442                                        


Q ss_pred             ceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccC
Q 046844          776 IEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLAS  855 (967)
Q Consensus       776 ~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~  855 (967)
                          ....++.++.||||+|+++|.||.+|+.++.|+.||||+|+++|.||..|+++++|++||||+|+++|.||..+++
T Consensus       627 ----~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~  702 (768)
T 3rgz_A          627 ----TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA  702 (768)
T ss_dssp             ----SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             ----hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence                2235778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeEEccCCccccCCCCCCcCCccCCCccCCCCCCCCCCCCCCCCCC
Q 046844          856 LNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQAR  905 (967)
Q Consensus       856 l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~~  905 (967)
                      ++.|++||+|+|+|+|+||...++.+|...+|.||+++||.|+. .|...
T Consensus       703 l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~  751 (768)
T 3rgz_A          703 LTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPS  751 (768)
T ss_dssp             CCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred             CCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence            99999999999999999999999999999999999999999987 78643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.4e-69  Score=663.38  Aligned_cols=637  Identities=29%  Similarity=0.371  Sum_probs=461.3

Q ss_pred             CCccEEEccCCCCCCC---CcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccch--hccCCCCC
Q 046844          175 PNLQVLSLSGCDLSGP---INHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPE--KILHVPTL  249 (967)
Q Consensus       175 ~~L~~L~Ls~~~l~~~---~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L  249 (967)
                      .+++.|+|+++.+.+.   ++..+.++++|+.++++.+.+.. .|..++.+++|++|+|++|.+.+.+|.  .++++++|
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  128 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL  128 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence            4677777777777776   66677777777777777665432 345677778888888888887777777  77778888


Q ss_pred             CEEeccCCCCCCCCCCCC-CCCCCCCEEEccCCCCCCCcccc---ccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEE
Q 046844          250 ETLDLSINQLLQGSLPNF-PKNSSLRDLILSHTGLSGTLPDS---IGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMD  325 (967)
Q Consensus       250 ~~L~L~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  325 (967)
                      ++|++++|.+.......+ ..+++|++|++++|.+++..|..   +.++++|++|++++|.+.+..+.  ..+++|++|+
T Consensus       129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~  206 (768)
T 3rgz_A          129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLD  206 (768)
T ss_dssp             CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEE
T ss_pred             CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEE
Confidence            888887776643333332 55777777777777777666655   66777777777777777665443  6677777777


Q ss_pred             ccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCcc
Q 046844          326 FSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFEN  405 (967)
Q Consensus       326 L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  405 (967)
                      +++|.+.+.+|.+..+++|++|++++|.+++.+|.. +..+++|++|++++|.+.+.+|..  .+++|++|++++|++.+
T Consensus       207 Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~  283 (768)
T 3rgz_A          207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG  283 (768)
T ss_dssp             CCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEE
T ss_pred             CcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCC
Confidence            777777766666545557777777777776666655 667777777777777776655544  56677777777777766


Q ss_pred             ccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCC--CCCCCCccEEECcCC
Q 046844          406 QLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPI--LKNQSQLSVLDISDN  483 (967)
Q Consensus       406 ~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~--l~~~~~L~~L~Ls~n  483 (967)
                      .+|......+++|+.|++++|.+++.+|..+ ..+++|++|++++|+++         +.+|.  +..+++|++|++++|
T Consensus       284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~---------~~ip~~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFS---------GELPMDTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             SCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEE---------EECCHHHHTTCTTCCEEECCSS
T ss_pred             ccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCccc---------CcCCHHHHhcCCCCCEEeCcCC
Confidence            6655444444666666666666665555544 66666666666666665         23332  555666666666666


Q ss_pred             ccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhc
Q 046844          484 QISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGN  563 (967)
Q Consensus       484 ~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~  563 (967)
                      ++++.+|..+....                       ++|++|++++|++++.+|.....                   .
T Consensus       354 ~l~~~~p~~l~~l~-----------------------~~L~~L~Ls~N~l~~~~~~~~~~-------------------~  391 (768)
T 3rgz_A          354 EFSGELPESLTNLS-----------------------ASLLTLDLSSNNFSGPILPNLCQ-------------------N  391 (768)
T ss_dssp             EEEECCCTTHHHHT-----------------------TTCSEEECCSSEEEEECCTTTTC-------------------S
T ss_pred             ccCccccHHHHhhh-----------------------cCCcEEEccCCCcCCCcChhhhh-------------------c
Confidence            66666665554432                       14666666666665544422110                   0


Q ss_pred             cccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCC
Q 046844          564 FMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDC  643 (967)
Q Consensus       564 ~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~  643 (967)
                      ....++.  |++++|.+++.+|..++.+++|++|++++|++++.+|..+..+.  +|+.|++++|.+++.+|.. |..++
T Consensus       392 ~~~~L~~--L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p~~-~~~l~  466 (768)
T 3rgz_A          392 PKNTLQE--LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS--KLRDLKLWLNMLEGEIPQE-LMYVK  466 (768)
T ss_dssp             TTCCCCE--EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT--TCCEEECCSSCCCSCCCGG-GGGCT
T ss_pred             ccCCccE--EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC--CCCEEECCCCcccCcCCHH-HcCCC
Confidence            0223333  77788888888888999999999999999999999999988876  9999999999999999988 88899


Q ss_pred             cccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEe
Q 046844          644 GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVD  723 (967)
Q Consensus       644 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ld  723 (967)
                      +|++|++++|++++.+|..|.++++|++|++++|++++.+|.+++++++|++|+|++|+++|.+  |..+..+++|+.||
T Consensus       467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~  544 (768)
T 3rgz_A          467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLD  544 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEE
T ss_pred             CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999988  99999999999999


Q ss_pred             cCCccCcCcCcHHHHHHHhhcccC--CCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCC
Q 046844          724 LACNKFSGRLSQKWLLTMMVAETK--SGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPI  801 (967)
Q Consensus       724 ls~N~l~g~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~i  801 (967)
                      +++|+++|.+|..++.........  ......+....................+........+..+..++++.|.++|.+
T Consensus       545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~  624 (768)
T 3rgz_A          545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT  624 (768)
T ss_dssp             CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred             CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence            999999999997764211000000  000000000000000000000011122222222233455667889999999999


Q ss_pred             cccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC
Q 046844          802 PVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS  876 (967)
Q Consensus       802 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~  876 (967)
                      |..++.++.|+.||||+|+++|.||..|+++++|+.|||++|+++|.||..+++++.|++||+|+|+++|.||..
T Consensus       625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~  699 (768)
T 3rgz_A          625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA  699 (768)
T ss_dssp             CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred             chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999975

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.2e-56  Score=546.42  Aligned_cols=524  Identities=21%  Similarity=0.226  Sum_probs=325.2

Q ss_pred             ccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCC
Q 046844          193 HYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSS  272 (967)
Q Consensus       193 ~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  272 (967)
                      ..|+++++|++|++++|.+.+..+..|+++++|++|++++|.+++..|..                        +..+++
T Consensus        91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------------------------~~~l~~  146 (680)
T 1ziw_A           91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT------------------------QVQLEN  146 (680)
T ss_dssp             TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS------------------------SSCCTT
T ss_pred             hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh------------------------hccccc
Confidence            34555555555555555554444444555555555555555544444444                        444555


Q ss_pred             CCEEEccCCCCCCCcccccc--CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCc----cccccCcccE
Q 046844          273 LRDLILSHTGLSGTLPDSIG--NLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP----SLHKSRNLNN  346 (967)
Q Consensus       273 L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~~~L~~  346 (967)
                      |++|++++|.+++..+..+.  .+++|++|++++|.+++..|..+..+++|+.+++.++.+.....    ......+|+.
T Consensus       147 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~  226 (680)
T 1ziw_A          147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN  226 (680)
T ss_dssp             CCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCE
T ss_pred             CCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccE
Confidence            55555555556555554443  45677777777777777777777777777777777776543211    1122346777


Q ss_pred             EECCCCCCCCCCChhhhhcccC--ccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEee
Q 046844          347 LDLSFNNLSGGISSTFWEQLLN--LQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLS  424 (967)
Q Consensus       347 L~L~~n~l~~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  424 (967)
                      |++++|.+.+..+.. +..++.  |++|++++|.+++..|..+..+++|++|++++|++.+..+.               
T Consensus       227 L~L~~n~l~~~~~~~-~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------  290 (680)
T 1ziw_A          227 LSLSNSQLSTTSNTT-FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH---------------  290 (680)
T ss_dssp             EECTTSCCCEECTTT-TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT---------------
T ss_pred             EEccCCcccccChhH-hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh---------------
Confidence            777777777655555 555544  77777777777766666777777777777777766643322               


Q ss_pred             CCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCC--CCCCCCCccEEECcCCccCCCCCcchhccCCCCcc
Q 046844          425 GNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIP--ILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLK  502 (967)
Q Consensus       425 ~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip--~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~  502 (967)
                                 .|..+++|+.|++++|....- ........++  .+..+++|++|++++|++++..+..+..       
T Consensus       291 -----------~~~~l~~L~~L~L~~~~~~~~-~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------  351 (680)
T 1ziw_A          291 -----------SLHGLFNVRYLNLKRSFTKQS-ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG-------  351 (680)
T ss_dssp             -----------TTTTCTTCCEEECTTCBCCC-------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTT-------
T ss_pred             -----------hhcCCCCccEEeccchhhhcc-cccccccccChhhcccCCCCCEEECCCCccCCCChhHhcc-------
Confidence                       224555555555554432200 0000000111  1556667777777777776655554433       


Q ss_pred             eeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccc
Q 046844          503 FLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAG  582 (967)
Q Consensus       503 ~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~  582 (967)
                                       +++|++|++++|.+...                   .++...+.                   
T Consensus       352 -----------------l~~L~~L~Ls~n~~~~~-------------------~l~~~~f~-------------------  376 (680)
T 1ziw_A          352 -----------------LINLKYLSLSNSFTSLR-------------------TLTNETFV-------------------  376 (680)
T ss_dssp             -----------------CTTCCEEECTTCBSCCC-------------------EECTTTTG-------------------
T ss_pred             -----------------ccCCcEEECCCCchhhh-------------------hcchhhhc-------------------
Confidence                             23444444444443211                   00000000                   


Q ss_pred             cCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCccc
Q 046844          583 VIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKS  662 (967)
Q Consensus       583 ~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~  662 (967)
                           -...++|+.|++++|++++..|..+..+.  +|+.|++++|.+++.+|...|.++++|++|++++|++++..+..
T Consensus       377 -----~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  449 (680)
T 1ziw_A          377 -----SLAHSPLHILNLTKNKISKIESDAFSWLG--HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS  449 (680)
T ss_dssp             -----GGTTSCCCEEECTTSCCCEECTTTTTTCT--TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTT
T ss_pred             -----ccccCcCceEECCCCCCCeEChhhhhCCC--CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhh
Confidence                 00123566666666666655555555544  66666666666666666544666667777777777776666666


Q ss_pred             ccCCCCCCEEECCCCccc--cccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHH
Q 046844          663 LANCNMLQVLDLRSNYIS--DNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLT  740 (967)
Q Consensus       663 ~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~  740 (967)
                      |..+++|+.|++++|.++  +.+|.+|.++++|++|++++|++++..  +..+..+++|+.||+++|++++..+..+   
T Consensus       450 ~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---  524 (680)
T 1ziw_A          450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN--DDMLEGLEKLEILDLQHNNLARLWKHAN---  524 (680)
T ss_dssp             TTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCGGGGSTTS---
T ss_pred             hhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCC--hhhhccccccCEEeCCCCCccccchhhc---
Confidence            777777777777777665  456666777777777777777776654  5556677777777777777654221000   


Q ss_pred             HhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCC
Q 046844          741 MMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNA  820 (967)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~  820 (967)
                                                       .+........++.|+.|||++|+++...+..|+.+++|+.|||++|+
T Consensus       525 ---------------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~  571 (680)
T 1ziw_A          525 ---------------------------------PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN  571 (680)
T ss_dssp             ---------------------------------TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ---------------------------------cCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC
Confidence                                             00001112356788999999999985444569999999999999999


Q ss_pred             CcccCCccccCCCCCCeEeCcCccccccCCcccc-CCCCCCeEEccCCccccCCCC
Q 046844          821 LTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLA-SLNFLSVLNLSYNNLVGKIPT  875 (967)
Q Consensus       821 l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~-~l~~L~~l~ls~N~l~g~ip~  875 (967)
                      +++..|..|.++++|+.|||++|++++.+|..+. .++.|+.+++++|.+.+..+.
T Consensus       572 l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            9987777889999999999999999999988887 789999999999999998774

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.8e-55  Score=530.38  Aligned_cols=597  Identities=21%  Similarity=0.201  Sum_probs=394.7

Q ss_pred             EEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCC
Q 046844          179 VLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQ  258 (967)
Q Consensus       179 ~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  258 (967)
                      .++.+++.++. +|..+.  +++++|++++|.+.+..+..|+++++|++|++++|.+++..|..+.++++|++|++++|.
T Consensus         8 ~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            8 VADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             EEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             eeECCCCCccc-cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence            44555555543 333332  566666666666666666666667777777777777766666666677777777777776


Q ss_pred             CCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccc
Q 046844          259 LLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSL  338 (967)
Q Consensus       259 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  338 (967)
                      +.......|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..
T Consensus        85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  164 (680)
T 1ziw_A           85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE  164 (680)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred             cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence            65554445666777777777777776666667777777777777777777666667777777777777777766554432


Q ss_pred             c---ccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhcc---CCCCCCEEeCcCCcCccccccccc
Q 046844          339 H---KSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLF---LLPNLEMLQLSNNQFENQLPEISN  412 (967)
Q Consensus       339 ~---~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~~  412 (967)
                      +   ...+|++|++++|.+.+..+.. +..+++|+.+++.++.+.+.....+.   ..++|+.|++++|.+.+..+.   
T Consensus       165 ~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~---  240 (680)
T 1ziw_A          165 LDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT---  240 (680)
T ss_dssp             HGGGTTCEESEEECTTCCCCCBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT---
T ss_pred             hhccccccccEEECCCCcccccChhh-hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh---
Confidence            2   2346666666666666544444 56666666666666655422211111   234555555555555543322   


Q ss_pred             cCCCcccEEEeeCCcCCCCCChhhhccCC--CCCEEECCCCcccccccCCCCCccCCC-CCCCCCccEEECcCCccCCCC
Q 046844          413 VSSSVLFDLDLSGNRLEGPVPISIFFELR--NLYTLDLSSNKFSRLKLASSKPRAIPI-LKNQSQLSVLDISDNQISGEV  489 (967)
Q Consensus       413 ~~~~~L~~L~l~~n~l~~~i~~~~~~~l~--~L~~L~Ls~n~l~~l~~~~~~~~~ip~-l~~~~~L~~L~Ls~n~i~~~~  489 (967)
                                            . |..++  +|++|++++|+++.+.         |. +..+++|++|++++|++++..
T Consensus       241 ----------------------~-~~~l~~~~L~~L~Ls~n~l~~~~---------~~~~~~l~~L~~L~L~~n~l~~~~  288 (680)
T 1ziw_A          241 ----------------------T-FLGLKWTNLTMLDLSYNNLNVVG---------NDSFAWLPQLEYFFLEYNNIQHLF  288 (680)
T ss_dssp             ----------------------T-TGGGGGSCCCEEECTTSCCCEEC---------TTTTTTCTTCCEEECCSCCBSEEC
T ss_pred             ----------------------H-hhccCcCCCCEEECCCCCcCccC---------cccccCcccccEeeCCCCccCccC
Confidence                                  1 12222  2444444444443221         11 344444444444444444444


Q ss_pred             CcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccc
Q 046844          490 PNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETE  569 (967)
Q Consensus       490 ~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~  569 (967)
                      |..+...                        ++|+.|++++|...+.++.            ..+..++...+..++.++
T Consensus       289 ~~~~~~l------------------------~~L~~L~L~~~~~~~~~~~------------~~lp~i~~~~~~~l~~L~  332 (680)
T 1ziw_A          289 SHSLHGL------------------------FNVRYLNLKRSFTKQSISL------------ASLPKIDDFSFQWLKCLE  332 (680)
T ss_dssp             TTTTTTC------------------------TTCCEEECTTCBCCC------------------CCEECTTTTTTCTTCC
T ss_pred             hhhhcCC------------------------CCccEEeccchhhhccccc------------ccccccChhhcccCCCCC
Confidence            3333221                        1222333322222211110            000000000111122333


Q ss_pred             eeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCC-CC-cccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccE
Q 046844          570 YFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGT-IP-ACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQI  647 (967)
Q Consensus       570 ~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~-~p-~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~  647 (967)
                      .  +++++|.+.+..+..+..+++|++|++++|.+++. ++ ..+.....++|+.|++++|++++..|.. |..+++|++
T Consensus       333 ~--L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~  409 (680)
T 1ziw_A          333 H--LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-FSWLGHLEV  409 (680)
T ss_dssp             E--EECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT-TTTCTTCCE
T ss_pred             E--EECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh-hhCCCCCCE
Confidence            3  55566666666667788899999999999986542 22 2233222238999999999999766766 999999999


Q ss_pred             EeCCCCccCCCCc-ccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCC
Q 046844          648 LDLSGNQLQGVVP-KSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLAC  726 (967)
Q Consensus       648 L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~  726 (967)
                      |++++|++++.+| ..|.++++|++|++++|++++..+..|..+++|+.|++++|.+++.-..|..+..+++|+.||+++
T Consensus       410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~  489 (680)
T 1ziw_A          410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN  489 (680)
T ss_dssp             EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred             EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence            9999999997666 789999999999999999999999999999999999999999985433488999999999999999


Q ss_pred             ccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCC-----
Q 046844          727 NKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPI-----  801 (967)
Q Consensus       727 N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~i-----  801 (967)
                      |++++..|..+                                            ..++.|+.|++++|++++..     
T Consensus       490 N~l~~i~~~~~--------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~  525 (680)
T 1ziw_A          490 NNIANINDDML--------------------------------------------EGLEKLEILDLQHNNLARLWKHANP  525 (680)
T ss_dssp             SCCCCCCTTTT--------------------------------------------TTCTTCCEEECCSSCCGGGGSTTST
T ss_pred             CCCCcCChhhh--------------------------------------------ccccccCEEeCCCCCccccchhhcc
Confidence            99986554221                                            24678999999999998642     


Q ss_pred             ---cccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCCC-
Q 046844          802 ---PVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTST-  877 (967)
Q Consensus       802 ---p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~-  877 (967)
                         +..|+.+++|++|+|++|+++...+..|+++++|+.|||++|++++..|..+.+++.|+.|++++|++++..|... 
T Consensus       526 ~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  605 (680)
T 1ziw_A          526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG  605 (680)
T ss_dssp             TSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred             CCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence               2348999999999999999995444579999999999999999998888888999999999999999999777432 


Q ss_pred             -cCCccCCCccCCCCCCCCCC
Q 046844          878 -QLQSFSPTSYEGNKGLYGPP  897 (967)
Q Consensus       878 -~~~~~~~~~~~gn~~lcg~~  897 (967)
                       .+..+....+.|||..|..+
T Consensus       606 ~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          606 PAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             HHHTTCSEEECTTCCCCBCCC
T ss_pred             ccccccCEEEccCCCcccCCc
Confidence             24445556678898887643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=9.5e-52  Score=496.38  Aligned_cols=543  Identities=18%  Similarity=0.168  Sum_probs=343.7

Q ss_pred             EEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEecc
Q 046844          152 ELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLS  231 (967)
Q Consensus       152 ~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls  231 (967)
                      .++.++..+...+..+      -+.+++|++++|.+++..+..|.++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus        16 ~~~c~~~~l~~iP~~l------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls   89 (606)
T 3t6q_A           16 TYNCENLGLNEIPGTL------PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT   89 (606)
T ss_dssp             EEECTTSCCSSCCTTS------CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             eEECCCCCcccCcCCC------CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence            4455555554443221      1367888888888887777788888888888888888887778888888888888888


Q ss_pred             CCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCC
Q 046844          232 ECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPI  311 (967)
Q Consensus       232 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  311 (967)
                      +|.+++..|..|+++++|++|++++|.+.......+..+++|++|++++|.+.+.....+..+++|++|++++|.+++..
T Consensus        90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  169 (606)
T 3t6q_A           90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS  169 (606)
T ss_dssp             TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred             CCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC
Confidence            88888777888888888888888888876655566777888888888888887644344445888888888888887766


Q ss_pred             CccccCCCCCc--EEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccC
Q 046844          312 PPSMANLTQLF--HMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL  389 (967)
Q Consensus       312 ~~~l~~l~~L~--~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  389 (967)
                      +..+..+++|+  +|++++|.+.+..+..+...+|++|++++|.   .++.. +..+.++....+....+.         
T Consensus       170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~-~~~l~~~~l~~l~~~~~~---------  236 (606)
T 3t6q_A          170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVI-FKGLKNSTIQSLWLGTFE---------  236 (606)
T ss_dssp             HHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS---CHHHH-HHHTTTCEEEEEECCCCT---------
T ss_pred             hhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch---hHHHH-hhhccccchhheechhhc---------
Confidence            77777888887  7788888887777766666677888887775   22332 445554444333322211         


Q ss_pred             CCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCC-
Q 046844          390 LPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPI-  468 (967)
Q Consensus       390 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~-  468 (967)
                        .+....+....+.+       .....++.|++++|.++ .++...|..+++|++|++++|+++.          +|. 
T Consensus       237 --~~~~~~i~~~~~~~-------l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~----------lp~~  296 (606)
T 3t6q_A          237 --DMDDEDISPAVFEG-------LCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLSE----------LPSG  296 (606)
T ss_dssp             --TSCCCCCCGGGGGG-------GGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCSC----------CCSS
T ss_pred             --cccccccChhHhch-------hhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccCC----------CChh
Confidence              11111111111110       00113555555555554 3333333555555555555554432          122 


Q ss_pred             CCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceee
Q 046844          469 LKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVD  548 (967)
Q Consensus       469 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  548 (967)
                      +..+++|++|++++|.+++..|..                                                        
T Consensus       297 l~~l~~L~~L~l~~n~l~~~~~~~--------------------------------------------------------  320 (606)
T 3t6q_A          297 LVGLSTLKKLVLSANKFENLCQIS--------------------------------------------------------  320 (606)
T ss_dssp             CCSCTTCCEEECTTCCCSBGGGGC--------------------------------------------------------
T ss_pred             hcccccCCEEECccCCcCcCchhh--------------------------------------------------------
Confidence            334444444444444443222222                                                        


Q ss_pred             ccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcc-cccCCCCCccEEECCC
Q 046844          549 YSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPAC-LITKSSSTLEVLNLGR  627 (967)
Q Consensus       549 ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~L~~L~Ls~  627 (967)
                                                             +..+++|++|++++|.+.+.+|.. +..+.  +|++|++++
T Consensus       321 ---------------------------------------~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~--~L~~L~l~~  359 (606)
T 3t6q_A          321 ---------------------------------------ASNFPSLTHLSIKGNTKRLELGTGCLENLE--NLRELDLSH  359 (606)
T ss_dssp             ---------------------------------------GGGCTTCSEEECCSCSSCCBCCSSTTTTCT--TCCEEECCS
T ss_pred             ---------------------------------------hhccCcCCEEECCCCCcccccchhhhhccC--cCCEEECCC
Confidence                                                   223344444444444444333332 22222  455555555


Q ss_pred             CcCcccC--CCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccch-hhhcCCCCCEEEccCCccc
Q 046844          628 NNLNGTL--SDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPC-WLRNASSLQVLVLRSNNFS  704 (967)
Q Consensus       628 N~l~~~i--p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~  704 (967)
                      |.+++..  +.. |..+++|++|++++|++++..|..|..+++|+.|++++|++++..|. ++.++++|++|++++|+++
T Consensus       360 n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  438 (606)
T 3t6q_A          360 DDIETSDCCNLQ-LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD  438 (606)
T ss_dssp             SCCCEEEESTTT-TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred             CccccccCcchh-cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC
Confidence            5444322  333 55555555555555555555555555556666666666665554432 3555666666666666665


Q ss_pred             eecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccC
Q 046844          705 GHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVP  784 (967)
Q Consensus       705 ~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  784 (967)
                      +..  |..+..+++|+.|++++|++++.....                                         ......+
T Consensus       439 ~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~-----------------------------------------~~~~~~l  475 (606)
T 3t6q_A          439 ISS--EQLFDGLPALQHLNLQGNHFPKGNIQK-----------------------------------------TNSLQTL  475 (606)
T ss_dssp             TTC--TTTTTTCTTCCEEECTTCBCGGGEECS-----------------------------------------SCGGGGC
T ss_pred             CcC--HHHHhCCCCCCEEECCCCCCCcccccc-----------------------------------------chhhccC
Confidence            544  555556666666666666655421100                                         0001245


Q ss_pred             CcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEc
Q 046844          785 NIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNL  864 (967)
Q Consensus       785 ~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~l  864 (967)
                      +.|+.|++++|++++.+|..|+.+++|+.|+|++|++++.+|..+++++.| .|||++|++++.+|..+..++.|+.+++
T Consensus       476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l  554 (606)
T 3t6q_A          476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL  554 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC
T ss_pred             CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC
Confidence            678888888888888889999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             cCCccccCCCC
Q 046844          865 SYNNLVGKIPT  875 (967)
Q Consensus       865 s~N~l~g~ip~  875 (967)
                      ++|++++..+.
T Consensus       555 ~~N~~~c~c~~  565 (606)
T 3t6q_A          555 RQNPLDCTCSN  565 (606)
T ss_dssp             TTCCEECSGGG
T ss_pred             CCCCccccCCc
Confidence            99999987763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.7e-50  Score=483.74  Aligned_cols=458  Identities=20%  Similarity=0.220  Sum_probs=292.2

Q ss_pred             chhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCC
Q 046844          215 GTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNL  294 (967)
Q Consensus       215 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  294 (967)
                      .|..|+++++|++|++++|.+++..+..+.++++|++|++++|.+.....+.+..+++|++|++++|.+.+..+..++.+
T Consensus        97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  176 (606)
T 3t6q_A           97 AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL  176 (606)
T ss_dssp             CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred             ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh
Confidence            34445555666666666666665555566666777777777776666566666667788888888888887777788888


Q ss_pred             CCCC--EEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCC--CCCCChhhhhccc--C
Q 046844          295 ENLT--RVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNL--SGGISSTFWEQLL--N  368 (967)
Q Consensus       295 ~~L~--~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~~l~--~  368 (967)
                      ++|+  +|++++|.+++..|..+. ..+|++|++++|..............++.+.+....-  ...++...+..+.  +
T Consensus       177 ~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~  255 (606)
T 3t6q_A          177 QQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS  255 (606)
T ss_dssp             TTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred             cccceeEEecCCCccCccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence            8888  888888888876665554 4678888888876221111111112344444432211  0123333344444  7


Q ss_pred             ccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEEC
Q 046844          369 LQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDL  448 (967)
Q Consensus       369 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L  448 (967)
                      |+.|++++|.+++..+..+..+++|++|++++|+++                          .+|..+ ..+++|++|++
T Consensus       256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------------------~lp~~l-~~l~~L~~L~l  308 (606)
T 3t6q_A          256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS--------------------------ELPSGL-VGLSTLKKLVL  308 (606)
T ss_dssp             EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS--------------------------CCCSSC-CSCTTCCEEEC
T ss_pred             eeEEEeecCccCccCHHHhccccCCCEEeccCCccC--------------------------CCChhh-cccccCCEEEC
Confidence            888899988888777777888888888888888776                          233333 56677777777


Q ss_pred             CCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcc-hhccCCCCcceeecccccccCcCCCCCCCCccEEe
Q 046844          449 SSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNW-IWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLD  527 (967)
Q Consensus       449 s~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~  527 (967)
                      ++|+++.+...        .+..+++|++|++++|.+.+.+|.. +..                        +++|++|+
T Consensus       309 ~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~------------------------l~~L~~L~  356 (606)
T 3t6q_A          309 SANKFENLCQI--------SASNFPSLTHLSIKGNTKRLELGTGCLEN------------------------LENLRELD  356 (606)
T ss_dssp             TTCCCSBGGGG--------CGGGCTTCSEEECCSCSSCCBCCSSTTTT------------------------CTTCCEEE
T ss_pred             ccCCcCcCchh--------hhhccCcCCEEECCCCCcccccchhhhhc------------------------cCcCCEEE
Confidence            77776633211        1566677777777777766555432 111                        22344444


Q ss_pred             CCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCC
Q 046844          528 LHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGT  607 (967)
Q Consensus       528 Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~  607 (967)
                      +++|++++..                                             ..+..+..+++|++|++++|++.+.
T Consensus       357 l~~n~l~~~~---------------------------------------------~~~~~~~~l~~L~~L~l~~n~l~~~  391 (606)
T 3t6q_A          357 LSHDDIETSD---------------------------------------------CCNLQLRNLSHLQSLNLSYNEPLSL  391 (606)
T ss_dssp             CCSSCCCEEE---------------------------------------------ESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred             CCCCcccccc---------------------------------------------CcchhcccCCCCCEEECCCCcCCcC
Confidence            4444333210                                             0123345566777777777777665


Q ss_pred             CCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccc---cc
Q 046844          608 IPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDN---FP  684 (967)
Q Consensus       608 ~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p  684 (967)
                      .|..+....  +|+.|++++|++.+..|...|..+++|++|++++|.+++..|..|..+++|++|++++|++++.   .+
T Consensus       392 ~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  469 (606)
T 3t6q_A          392 KTEAFKECP--QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT  469 (606)
T ss_dssp             CTTTTTTCT--TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred             CHHHhcCCc--cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc
Confidence            565555544  6677777777666555554466666666666666666666666666666666666666666652   22


Q ss_pred             hhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCce
Q 046844          685 CWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQF  764 (967)
Q Consensus       685 ~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (967)
                      ..+..+++|++|++++|++++..  |..+..++                                               
T Consensus       470 ~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~-----------------------------------------------  500 (606)
T 3t6q_A          470 NSLQTLGRLEILVLSFCDLSSID--QHAFTSLK-----------------------------------------------  500 (606)
T ss_dssp             CGGGGCTTCCEEECTTSCCCEEC--TTTTTTCT-----------------------------------------------
T ss_pred             hhhccCCCccEEECCCCccCccC--hhhhcccc-----------------------------------------------
Confidence            44555666666666666665554  44444444                                               


Q ss_pred             eeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCcc
Q 046844          765 YEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNN  844 (967)
Q Consensus       765 ~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~  844 (967)
                                           .|+.||+++|++++.+|..++.++.| .|||++|++++.+|..++.+++|+.||+++|.
T Consensus       501 ---------------------~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          501 ---------------------MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP  558 (606)
T ss_dssp             ---------------------TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred             ---------------------CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence                                 45556666666666777778888888 89999999998888888888999999999999


Q ss_pred             ccccCC
Q 046844          845 LSGKIP  850 (967)
Q Consensus       845 l~g~ip  850 (967)
                      +++..+
T Consensus       559 ~~c~c~  564 (606)
T 3t6q_A          559 LDCTCS  564 (606)
T ss_dssp             EECSGG
T ss_pred             ccccCC
Confidence            887665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.1e-51  Score=488.77  Aligned_cols=539  Identities=21%  Similarity=0.174  Sum_probs=361.1

Q ss_pred             CEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEec
Q 046844          151 TELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDL  230 (967)
Q Consensus       151 ~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  230 (967)
                      ++++.++.+++..+..+      .+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|+++++|++|++
T Consensus        14 ~~~~c~~~~l~~ip~~~------~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L   87 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDDI------PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL   87 (606)
T ss_dssp             TEEECTTSCCSSCCTTS------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CceEccCCCcccCCCCC------CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence            45566666665544321      267888888888888777777888888888888888888777778888888888888


Q ss_pred             cCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCC-CccccccCCCCCCEEEccCCCCCC
Q 046844          231 SECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSG-TLPDSIGNLENLTRVEVSSCNFTG  309 (967)
Q Consensus       231 s~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~  309 (967)
                      ++|.+++..|..|+++++|++|++++|.+.......+..+++|++|++++|.+.+ .+|..++++++|++|++++|++++
T Consensus        88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A           88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             CCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence            8888887778888888888888888888766665667778888888888888775 457778888888888888888877


Q ss_pred             CCCccccCCCCCc----EEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcCh
Q 046844          310 PIPPSMANLTQLF----HMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPR  385 (967)
Q Consensus       310 ~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  385 (967)
                      ..+..+..+++|+    +|++++|.+.+..+..+...+|++|++++|.+.+......+.++++|+.+++..+.+.+.   
T Consensus       168 ~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~---  244 (606)
T 3vq2_A          168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE---  244 (606)
T ss_dssp             ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS---
T ss_pred             cChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccC---
Confidence            6666666665554    677777777766655555557777777777766444334466667776666654443321   


Q ss_pred             hccCCCCCCEEeCcCCcCccccccccccCCCcccEEEe-eCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCc
Q 046844          386 SLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDL-SGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPR  464 (967)
Q Consensus       386 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l-~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~  464 (967)
                           ..+..+.  ...    +   .......++.+++ ..+.+.+.+|.  |..+++|+.|++++|.+..+        
T Consensus       245 -----~~l~~~~--~~~----~---~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l--------  300 (606)
T 3vq2_A          245 -----RNLEIFE--PSI----M---EGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYL--------  300 (606)
T ss_dssp             -----CCCSCCC--GGG----G---TTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCC--------
T ss_pred             -----CcccccC--hHH----h---hhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhh--------
Confidence                 0111000  000    0   0001123555565 44555555554  46666666666666665432        


Q ss_pred             cCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCC
Q 046844          465 AIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNT  544 (967)
Q Consensus       465 ~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  544 (967)
                        |.+..+++|++|++++|.+ +.+|..                          .+++|+.|++++|+..+.+       
T Consensus       301 --~~l~~~~~L~~L~l~~n~l-~~lp~~--------------------------~l~~L~~L~l~~n~~~~~~-------  344 (606)
T 3vq2_A          301 --EDVPKHFKWQSLSIIRCQL-KQFPTL--------------------------DLPFLKSLTLTMNKGSISF-------  344 (606)
T ss_dssp             --CCCCTTCCCSEEEEESCCC-SSCCCC--------------------------CCSSCCEEEEESCSSCEEC-------
T ss_pred             --hhccccccCCEEEcccccC-cccccC--------------------------CCCccceeeccCCcCccch-------
Confidence              2244555566666666655 344422                          2334444444444222110       


Q ss_pred             ceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCC--CCcccccCCCCCccE
Q 046844          545 SYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGT--IPACLITKSSSTLEV  622 (967)
Q Consensus       545 ~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~--~p~~~~~~~~~~L~~  622 (967)
                                                                .+..+++|++|++++|++++.  +|..+....  +|++
T Consensus       345 ------------------------------------------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~--~L~~  380 (606)
T 3vq2_A          345 ------------------------------------------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTN--SLRH  380 (606)
T ss_dssp             ------------------------------------------CCCCCTTCCEEECCSSCEEEEEECCHHHHCCS--CCCE
T ss_pred             ------------------------------------------hhccCCCCCEEECcCCccCCCcchhhhhccCC--cccE
Confidence                                                      123456677777777776643  355555544  6777


Q ss_pred             EECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCc-ccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCC
Q 046844          623 LNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP-KSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSN  701 (967)
Q Consensus       623 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  701 (967)
                      |++++|.++ .+|.. |..+++|++|++++|++++..| ..|..+++|++|++++|++++..|..+.++++|++|++++|
T Consensus       381 L~L~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  458 (606)
T 3vq2_A          381 LDLSFNGAI-IMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN  458 (606)
T ss_dssp             EECCSCSEE-EECCC-CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             eECCCCccc-cchhh-ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence            777777766 45544 6677777777777777776666 56777777777777777777777777777777777777777


Q ss_pred             ccce-ecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeee
Q 046844          702 NFSG-HISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKL  780 (967)
Q Consensus       702 ~l~~-~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  780 (967)
                      ++++ .+  |..+..+++                                                              
T Consensus       459 ~l~~~~~--~~~~~~l~~--------------------------------------------------------------  474 (606)
T 3vq2_A          459 SFKDNTL--SNVFANTTN--------------------------------------------------------------  474 (606)
T ss_dssp             EEGGGEE--CSCCTTCTT--------------------------------------------------------------
T ss_pred             cCCCcch--HHhhccCCC--------------------------------------------------------------
Confidence            7665 23  444444444                                                              


Q ss_pred             cccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCC-CC
Q 046844          781 LKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLN-FL  859 (967)
Q Consensus       781 ~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L  859 (967)
                            |+.|++++|++++.+|..|+.+++|++|+|++|++++.+|..|+++++|+.|||++|+++ .+|..+..++ +|
T Consensus       475 ------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L  547 (606)
T 3vq2_A          475 ------LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSL  547 (606)
T ss_dssp             ------CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTC
T ss_pred             ------CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccC
Confidence                  455555555566667777888999999999999999999999999999999999999998 6777788887 59


Q ss_pred             CeEEccCCccccCCCC
Q 046844          860 SVLNLSYNNLVGKIPT  875 (967)
Q Consensus       860 ~~l~ls~N~l~g~ip~  875 (967)
                      +++++++|++.+..|.
T Consensus       548 ~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          548 AFFNLTNNSVACICEH  563 (606)
T ss_dssp             CEEECCSCCCCCSSTT
T ss_pred             cEEEccCCCcccCCcc
Confidence            9999999999887774

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-50  Score=499.61  Aligned_cols=570  Identities=20%  Similarity=0.213  Sum_probs=349.9

Q ss_pred             EEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcc-hhhhcCCCCCCEEec
Q 046844          152 ELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSG-TEFLAHLTNLKALDL  230 (967)
Q Consensus       152 ~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L  230 (967)
                      ..+.++++++.++.       ..++|++|+|++|.+++..+..+.++++|++|++++|...+.+ |..|.++++|++|+|
T Consensus         8 ~~dcs~~~L~~vP~-------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L   80 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ-------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL   80 (844)
T ss_dssp             EEEESCCCSSCCCS-------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred             EEEccCCCCCCCCC-------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence            45566666655432       2467777777777777766777777777777777777555554 566777777777777


Q ss_pred             cCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCcc-ccccCCCCCCEEEccCCCC
Q 046844          231 SECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPN--FPKNSSLRDLILSHTGLSGTLP-DSIGNLENLTRVEVSSCNF  307 (967)
Q Consensus       231 s~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l  307 (967)
                      ++|.+.+..|..|.++++|++|+|++|.+.......  +..+++|++|++++|.+.+..+ ..++++++|++|++++|.+
T Consensus        81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            777777666777777777777777777665433222  5566667777776666665443 4566666666666666666


Q ss_pred             CCCCCccccCC--CCCcEEEccCccccccCcccccc-CcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcC
Q 046844          308 TGPIPPSMANL--TQLFHMDFSSNHFFGPIPSLHKS-RNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIP  384 (967)
Q Consensus       308 ~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  384 (967)
                      ++..+..+..+  ++|+.|+++.|.+.+..+..... .+                 . +.. ..|+.|++++|.+++..+
T Consensus       161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~-----------------~-~~~-~~L~~L~Ls~n~l~~~~~  221 (844)
T 3j0a_A          161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN-----------------P-FRN-MVLEILDVSGNGWTVDIT  221 (844)
T ss_dssp             CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC-----------------T-TTT-CCBSEEBCSSCCSSTTTT
T ss_pred             CeeCHHHcccccCCccceEECCCCccccccccchhhcCC-----------------c-ccc-CceeEEecCCCcCchhHH
Confidence            66666666555  56666666666655543321110 01                 0 000 124444444444443333


Q ss_pred             hhccC---CCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccC--CCCCEEECCCCcccccccC
Q 046844          385 RSLFL---LPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFEL--RNLYTLDLSSNKFSRLKLA  459 (967)
Q Consensus       385 ~~l~~---l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l--~~L~~L~Ls~n~l~~l~~~  459 (967)
                      ..+..   .+.++.+.+..+.+....                ..+.+. ......|..+  ++|+.|++++|.+..+.  
T Consensus       222 ~~~~~~l~~~~l~~L~l~~~~~~~~~----------------~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~--  282 (844)
T 3j0a_A          222 GNFSNAISKSQAFSLILAHHIMGAGF----------------GFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLN--  282 (844)
T ss_dssp             SGGGGTSCSCCBSEEECCSSCCBCSS----------------SCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEEC--
T ss_pred             HHHHhhcCcccccceecccccccccc----------------cccccC-CCChhhhhccccCCccEEECCCCcccccC--
Confidence            33321   133444444433221100                011111 1111112222  44555555555444221  


Q ss_pred             CCCCccCCC-CCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCC
Q 046844          460 SSKPRAIPI-LKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIP  538 (967)
Q Consensus       460 ~~~~~~ip~-l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~  538 (967)
                             |. +..+++|+.|++++|++++..|..+..                        +++|++|++++|+      
T Consensus       283 -------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~------------------------l~~L~~L~Ls~N~------  325 (844)
T 3j0a_A          283 -------SRVFETLKDLKVLNLAYNKINKIADEAFYG------------------------LDNLQVLNLSYNL------  325 (844)
T ss_dssp             -------SCCSSSCCCCCEEEEESCCCCEECTTTTTT------------------------CSSCCEEEEESCC------
T ss_pred             -------hhhhhcCCCCCEEECCCCcCCCCChHHhcC------------------------CCCCCEEECCCCC------
Confidence                   11 444455555555555554433333221                        2233333333333      


Q ss_pred             CCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCC
Q 046844          539 YMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSS  618 (967)
Q Consensus       539 ~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~  618 (967)
                                                               +++..|..+..+++|+.|++++|++.+..+..+....  
T Consensus       326 -----------------------------------------l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~--  362 (844)
T 3j0a_A          326 -----------------------------------------LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE--  362 (844)
T ss_dssp             -----------------------------------------CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC--
T ss_pred             -----------------------------------------CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC--
Confidence                                                     3333344555667777777777777655555555544  


Q ss_pred             CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCcccccc-chhhhcCCCCCEEE
Q 046844          619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNF-PCWLRNASSLQVLV  697 (967)
Q Consensus       619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~  697 (967)
                      +|+.|+|++|.++ .++     .+++|+.|++++|+++. +|..   ..+++.|++++|++++.. +..+.++++|++|+
T Consensus       363 ~L~~L~Ls~N~l~-~i~-----~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~  432 (844)
T 3j0a_A          363 KLQTLDLRDNALT-TIH-----FIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILI  432 (844)
T ss_dssp             CCCEEEEETCCSC-CCS-----SCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEE
T ss_pred             CCCEEECCCCCCC-ccc-----CCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceee
Confidence            7778888877776 232     35677888888888873 3433   457888888888888753 33456788888888


Q ss_pred             ccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccce
Q 046844          698 LRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIE  777 (967)
Q Consensus       698 L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  777 (967)
                      |++|++++... ...+..+++|+.|++++|.+++..+..                                       ..
T Consensus       433 Ls~N~l~~~~~-~~~~~~~~~L~~L~Ls~N~l~~~~~~~---------------------------------------~~  472 (844)
T 3j0a_A          433 LNQNRFSSCSG-DQTPSENPSLEQLFLGENMLQLAWETE---------------------------------------LC  472 (844)
T ss_dssp             EESCCCCCCCS-SSSSCSCTTCCBCEEESCCCSSSCCSC---------------------------------------CC
T ss_pred             CCCCccccccc-ccccccCCccccccCCCCccccccccc---------------------------------------cc
Confidence            88888886531 223556788999999999887433210                                       00


Q ss_pred             eeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCC
Q 046844          778 IKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLN  857 (967)
Q Consensus       778 ~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  857 (967)
                      ......++.|+.|||++|++++.+|..|+.+++|+.|||++|++++..|..+.  ++|+.|||++|+|+|.+|..+.   
T Consensus       473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---  547 (844)
T 3j0a_A          473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---  547 (844)
T ss_dssp             SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---
T ss_pred             hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---
Confidence            01123567899999999999999999999999999999999999998887776  8999999999999999998764   


Q ss_pred             CCCeEEccCCccccCCCCCCcCCccCCCccCCCCCCCCCCCCCCCCCC
Q 046844          858 FLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQAR  905 (967)
Q Consensus       858 ~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~~  905 (967)
                      .|+.+++++|.+.+..+..    .|......++..+||.|....|..+
T Consensus       548 ~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~C~~p  591 (844)
T 3j0a_A          548 SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPADIYCVYP  591 (844)
T ss_dssp             SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred             CcCEEEecCCCcccccccH----HHHHHHHhcCcccccccccCccCCc
Confidence            6899999999999877632    2221122456667777666677644

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.2e-49  Score=473.37  Aligned_cols=515  Identities=20%  Similarity=0.152  Sum_probs=330.1

Q ss_pred             CCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 046844          248 TLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFS  327 (967)
Q Consensus       248 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  327 (967)
                      ++++|++++|.+.......|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++..|..+.++++|++|+++
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  112 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV  112 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence            34444444444333333334444444444444444444444444445555555555555544444445555555555555


Q ss_pred             CccccccCcc-ccccCcccEEECCCCCCCC-CCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCC----EEeCcCC
Q 046844          328 SNHFFGPIPS-LHKSRNLNNLDLSFNNLSG-GISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLE----MLQLSNN  401 (967)
Q Consensus       328 ~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~~n  401 (967)
                      +|.+.+..+. +..+.+|++|++++|.+.+ .+|.. ++++++|++|++++|.+++..+..+..+++|+    +|++++|
T Consensus       113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n  191 (606)
T 3vq2_A          113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN  191 (606)
T ss_dssp             TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred             CCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence            5544433322 2222355555555555543 34444 56666666666666666655555555444433    6777777


Q ss_pred             cCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECc
Q 046844          402 QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDIS  481 (967)
Q Consensus       402 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls  481 (967)
                      .+.+..+...  ...+|+.|++++|.+.+......+..++.++.+++..+.+.....                +      
T Consensus       192 ~l~~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~----------------l------  247 (606)
T 3vq2_A          192 PIDFIQDQAF--QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN----------------L------  247 (606)
T ss_dssp             CCCEECTTTT--TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC----------------C------
T ss_pred             CcceeCcccc--cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc----------------c------
Confidence            7664443322  122677777777766644444444777777777665443331100                0      


Q ss_pred             CCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeC-CCCCCCCCCCCC--CCCCceeeccCCcCCCCC
Q 046844          482 DNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDL-HSNQLRGNIPYM--SPNTSYVDYSNNNFTSIP  558 (967)
Q Consensus       482 ~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~L-s~n~l~~~~~~~--~~~l~~L~ls~n~l~~i~  558 (967)
                          ....+..+....     .+                 .++.+++ ..+.+.+.+|..  .++++.+++++|.++.+ 
T Consensus       248 ----~~~~~~~~~~l~-----~l-----------------~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-  300 (606)
T 3vq2_A          248 ----EIFEPSIMEGLC-----DV-----------------TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL-  300 (606)
T ss_dssp             ----SCCCGGGGTTGG-----GS-----------------EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCC-
T ss_pred             ----cccChHHhhhhh-----hc-----------------cHhheeccccccccccccccccCCCCCEEEecCccchhh-
Confidence                000000110000     00                 1233333 333333333221  12333333333333222 


Q ss_pred             cchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCC
Q 046844          559 ADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTI  638 (967)
Q Consensus       559 ~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~  638 (967)
                                                | .+..+++|+.|++++|.+ +.+|. + ...  +|++|++++|...+.++   
T Consensus       301 --------------------------~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~--~L~~L~l~~n~~~~~~~---  345 (606)
T 3vq2_A          301 --------------------------E-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLP--FLKSLTLTMNKGSISFK---  345 (606)
T ss_dssp             --------------------------C-CCCTTCCCSEEEEESCCC-SSCCC-C-CCS--SCCEEEEESCSSCEECC---
T ss_pred             --------------------------h-hccccccCCEEEcccccC-ccccc-C-CCC--ccceeeccCCcCccchh---
Confidence                                      2 345567888899999988 57884 3 444  89999999986665553   


Q ss_pred             CCCCCcccEEeCCCCccCCC--CcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCC-CCCCC
Q 046844          639 FPGDCGLQILDLSGNQLQGV--VPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCP-RNKVS  715 (967)
Q Consensus       639 ~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p-~~~~~  715 (967)
                      +..+++|++|++++|++++.  .|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..  | ..+..
T Consensus       346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~  422 (606)
T 3vq2_A          346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVT--EFSAFLS  422 (606)
T ss_dssp             CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTT--TTTTTTT
T ss_pred             hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCcc--Chhhhhc
Confidence            67888999999999999876  47888999999999999999887 5578889999999999999998875  5 57888


Q ss_pred             CCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCC
Q 046844          716 WPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSN  795 (967)
Q Consensus       716 l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N  795 (967)
                      +++|+.|++++|++++..|..+                                            ..++.|+.|++++|
T Consensus       423 l~~L~~L~l~~n~l~~~~~~~~--------------------------------------------~~l~~L~~L~l~~n  458 (606)
T 3vq2_A          423 LEKLLYLDISYTNTKIDFDGIF--------------------------------------------LGLTSLNTLKMAGN  458 (606)
T ss_dssp             CTTCCEEECTTSCCEECCTTTT--------------------------------------------TTCTTCCEEECTTC
T ss_pred             cccCCEEECcCCCCCccchhhh--------------------------------------------cCCCCCCEEECCCC
Confidence            9999999999999987766322                                            24677999999999


Q ss_pred             cccC-CCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCC
Q 046844          796 NFEG-PIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP  874 (967)
Q Consensus       796 ~l~g-~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip  874 (967)
                      ++++ .+|..++.+++|+.|+|++|++++.+|..|+++++|+.|||++|++++.+|..+.+++.|++|++++|+++ .+|
T Consensus       459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p  537 (606)
T 3vq2_A          459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSK  537 (606)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEE
T ss_pred             cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccC
Confidence            9998 47889999999999999999999999999999999999999999999999999999999999999999998 577


Q ss_pred             CCC-cCC-ccCCCccCCCCCCCCCC
Q 046844          875 TST-QLQ-SFSPTSYEGNKGLYGPP  897 (967)
Q Consensus       875 ~~~-~~~-~~~~~~~~gn~~lcg~~  897 (967)
                      ... .+. .+....+.|||..|..+
T Consensus       538 ~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          538 GILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             SCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             HhHhhhcccCcEEEccCCCcccCCc
Confidence            651 221 23445678898777644

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=7.8e-48  Score=477.46  Aligned_cols=482  Identities=22%  Similarity=0.230  Sum_probs=279.7

Q ss_pred             cCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhh--hcCCCCCCEEeccCCCCCCccc-hhccCCCC
Q 046844          172 SFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEF--LAHLTNLKALDLSECGLQGKFP-EKILHVPT  248 (967)
Q Consensus       172 ~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~  248 (967)
                      .++++|++|+|++|.+.+..|..+.++++|++|+|++|.+.+..+..  |+++++|++|++++|.+++..+ ..|.++++
T Consensus        70 ~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~  149 (844)
T 3j0a_A           70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS  149 (844)
T ss_dssp             SSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred             cCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence            34444444555555555555666667777777777777666654443  6666666666666666665433 35566666


Q ss_pred             CCEEeccCCCCCCCCCCCCCCC--CCCCEEEccCCCCCCCccccccCCCC------CCEEEccCCCCCCCCCccccCC--
Q 046844          249 LETLDLSINQLLQGSLPNFPKN--SSLRDLILSHTGLSGTLPDSIGNLEN------LTRVEVSSCNFTGPIPPSMANL--  318 (967)
Q Consensus       249 L~~L~L~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~Ls~n~l~~~~~~~l~~l--  318 (967)
                      |++|++++|.+.......+..+  ++|+.|++++|.+.+..|..++.+++      |++|++++|.+++..+..+...  
T Consensus       150 L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~  229 (844)
T 3j0a_A          150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS  229 (844)
T ss_dssp             CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred             CCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence            6666666665543333333333  44555555555555444444433333      4445554444444333333211  


Q ss_pred             -CCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhc--ccCccEEEcCCCcCCCCcChhccCCCCCCE
Q 046844          319 -TQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQ--LLNLQIVVLGHNSLSGSIPRSLFLLPNLEM  395 (967)
Q Consensus       319 -~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  395 (967)
                       .+++.+.++.+.....              +..+.+.+..... +..  .++|+.|++++|.+.+..+..+..+++|+.
T Consensus       230 ~~~l~~L~l~~~~~~~~--------------~~~~~l~~~~~~~-f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  294 (844)
T 3j0a_A          230 KSQAFSLILAHHIMGAG--------------FGFHNIKDPDQNT-FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV  294 (844)
T ss_dssp             SCCBSEEECCSSCCBCS--------------SSCSSSTTGGGTT-TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCE
T ss_pred             cccccceeccccccccc--------------ccccccCCCChhh-hhccccCCccEEECCCCcccccChhhhhcCCCCCE
Confidence             2333333332211100              0112222111111 222  256667777777666666666666666666


Q ss_pred             EeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCc
Q 046844          396 LQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQL  475 (967)
Q Consensus       396 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L  475 (967)
                      |++++|++.+..+. .+..+++|+.|++++|.+.+..|. .|..+++|+.|++++|                        
T Consensus       295 L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N------------------------  348 (844)
T 3j0a_A          295 LNLAYNKINKIADE-AFYGLDNLQVLNLSYNLLGELYSS-NFYGLPKVAYIDLQKN------------------------  348 (844)
T ss_dssp             EEEESCCCCEECTT-TTTTCSSCCEEEEESCCCSCCCSC-SCSSCTTCCEEECCSC------------------------
T ss_pred             EECCCCcCCCCChH-HhcCCCCCCEEECCCCCCCccCHH-HhcCCCCCCEEECCCC------------------------
Confidence            66666666543332 122344444455554444422222 2244444444444444                        


Q ss_pred             cEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCC
Q 046844          476 SVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFT  555 (967)
Q Consensus       476 ~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~  555 (967)
                              ++++..+..+..  .++|+.|++++|.++.++.   +++|+.+++++|+++ .+|.....++.+++++|+++
T Consensus       349 --------~i~~~~~~~~~~--l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~  414 (844)
T 3j0a_A          349 --------HIAIIQDQTFKF--LEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLE  414 (844)
T ss_dssp             --------CCCCCCSSCSCS--CCCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCC
T ss_pred             --------CCCccChhhhcC--CCCCCEEECCCCCCCcccC---CCCcchhccCCCCcc-cccccccccceeecccCccc
Confidence                    444333333321  1234444444444443322   344555555555554 22333344555555555554


Q ss_pred             CCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcc---
Q 046844          556 SIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNG---  632 (967)
Q Consensus       556 ~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~---  632 (967)
                      .++.                         +..+..+++|+.|++++|++++..+..... ..++|+.|+|++|.+++   
T Consensus       415 ~l~~-------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~L~~L~Ls~N~l~~~~~  468 (844)
T 3j0a_A          415 NLDI-------------------------LYFLLRVPHLQILILNQNRFSSCSGDQTPS-ENPSLEQLFLGENMLQLAWE  468 (844)
T ss_dssp             SSTT-------------------------HHHHTTCTTCCEEEEESCCCCCCCSSSSSC-SCTTCCBCEEESCCCSSSCC
T ss_pred             cCch-------------------------hhhhhcCCccceeeCCCCcccccccccccc-cCCccccccCCCCccccccc
Confidence            4332                         123456788999999999988543332221 12389999999999873   


Q ss_pred             --cCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCC
Q 046844          633 --TLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCP  710 (967)
Q Consensus       633 --~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p  710 (967)
                        ..+.. |.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..+.  ++|++|+|++|++++.+  |
T Consensus       469 ~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~--~  543 (844)
T 3j0a_A          469 TELCWDV-FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPN--P  543 (844)
T ss_dssp             SCCCSSC-SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCC--S
T ss_pred             cccchhh-hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCC--h
Confidence              22333 88899999999999999999999999999999999999999998887776  89999999999999987  6


Q ss_pred             CCCCCCCCCcEEecCCccCcCcCcHHHHHHHh
Q 046844          711 RNKVSWPLLQIVDLACNKFSGRLSQKWLLTMM  742 (967)
Q Consensus       711 ~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~  742 (967)
                      ..+   .+|+.+++++|++.|.++..++..+.
T Consensus       544 ~~~---~~L~~l~l~~Np~~C~c~~~~f~~~~  572 (844)
T 3j0a_A          544 DVF---VSLSVLDITHNKFICECELSTFINWL  572 (844)
T ss_dssp             CCC---SSCCEEEEEEECCCCSSSCCSHHHHH
T ss_pred             hHh---CCcCEEEecCCCcccccccHHHHHHH
Confidence            554   58999999999999999876665444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.3e-46  Score=441.68  Aligned_cols=501  Identities=20%  Similarity=0.167  Sum_probs=310.8

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEec
Q 046844          175 PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDL  254 (967)
Q Consensus       175 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  254 (967)
                      +++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|+++++|++|++++|.+++..|..|.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            45777777777777666666777777777777777776666666777777777777777777666667777777777777


Q ss_pred             cCCCCCCCCCCCCCCCCCCCEEEccCCCCCC-CccccccCCCCCCEEEccCCCCCCCCCccccCCCCC----cEEEccCc
Q 046844          255 SINQLLQGSLPNFPKNSSLRDLILSHTGLSG-TLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQL----FHMDFSSN  329 (967)
Q Consensus       255 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L----~~L~L~~n  329 (967)
                      ++|.+.......+..+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+..+++|    +++++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            7776655544456666677777777776665 356666667777777777776665555556555555    56666666


Q ss_pred             cccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCcccccc
Q 046844          330 HFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPE  409 (967)
Q Consensus       330 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  409 (967)
                      .+.+..+..+...+|++|++++|.....                        ..+..+..++.++.+.+....+...   
T Consensus       188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~------------------------~~~~~~~~l~~l~~~~l~~~~~~~~---  240 (570)
T 2z63_A          188 PMNFIQPGAFKEIRLHKLTLRNNFDSLN------------------------VMKTCIQGLAGLEVHRLVLGEFRNE---  240 (570)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSCTT------------------------HHHHHHHTTTTCEEEEEEEEECCCC---
T ss_pred             CceecCHHHhccCcceeEeccccccccc------------------------chhhhhcCccccceeeeccccccCc---
Confidence            6555544444444555555555433221                        1223334444444433322111100   


Q ss_pred             ccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCC-ccCCC
Q 046844          410 ISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDN-QISGE  488 (967)
Q Consensus       410 ~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n-~i~~~  488 (967)
                            ..++           .++...|..++++                              .++.++++++ .+.+.
T Consensus       241 ------~~l~-----------~~~~~~~~~l~~l------------------------------~l~~l~l~~~~~~~~~  273 (570)
T 2z63_A          241 ------GNLE-----------KFDKSALEGLCNL------------------------------TIEEFRLAYLDYYLDD  273 (570)
T ss_dssp             ------SSCE-----------ECCTTTTGGGGGS------------------------------EEEEEEEEETTEEESC
T ss_pred             ------hhhh-----------hcchhhhcccccc------------------------------chhhhhhhcchhhhhh
Confidence                  0000           1111111111111                              1344445444 44444


Q ss_pred             CCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhcccccc
Q 046844          489 VPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSET  568 (967)
Q Consensus       489 ~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l  568 (967)
                      .|..+...  ++|+.|++++|.++.+                                                      
T Consensus       274 ~~~~~~~l--~~L~~L~l~~~~l~~l------------------------------------------------------  297 (570)
T 2z63_A          274 IIDLFNCL--TNVSSFSLVSVTIERV------------------------------------------------------  297 (570)
T ss_dssp             STTTTGGG--TTCSEEEEESCEECSC------------------------------------------------------
T ss_pred             chhhhcCc--CcccEEEecCccchhh------------------------------------------------------
Confidence            44443322  1233333322222221                                                      


Q ss_pred             ceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEE
Q 046844          569 EYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQIL  648 (967)
Q Consensus       569 ~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L  648 (967)
                                      |..+..+ +|+.|++++|.+. .+|..  ...  +|+.|++++|.+.+.++.   ..+++|++|
T Consensus       298 ----------------~~~~~~~-~L~~L~l~~n~~~-~l~~~--~l~--~L~~L~l~~n~~~~~~~~---~~~~~L~~L  352 (570)
T 2z63_A          298 ----------------KDFSYNF-GWQHLELVNCKFG-QFPTL--KLK--SLKRLTFTSNKGGNAFSE---VDLPSLEFL  352 (570)
T ss_dssp             ----------------CBCCSCC-CCSEEEEESCBCS-SCCBC--BCS--SCCEEEEESCBSCCBCCC---CBCTTCCEE
T ss_pred             ----------------hhhhccC-CccEEeeccCccc-ccCcc--ccc--ccCEEeCcCCcccccccc---ccCCCCCEE
Confidence                            1122223 4555555555554 44432  122  555555555555544432   345566666


Q ss_pred             eCCCCccCCCC--cccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCC-CCCCCCCCCcEEecC
Q 046844          649 DLSGNQLQGVV--PKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCP-RNKVSWPLLQIVDLA  725 (967)
Q Consensus       649 ~L~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p-~~~~~l~~L~~Ldls  725 (967)
                      ++++|++++..  |..+..+++|++|++++|++++..+. +..+++|+.|++++|++.+..  | ..+..+++|+.|+++
T Consensus       353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~l~  429 (570)
T 2z63_A          353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDIS  429 (570)
T ss_dssp             ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT--TSCTTTTCTTCCEEECT
T ss_pred             eCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc--chhhhhcCCCCCEEeCc
Confidence            66666666443  55666777777777777777665444 667777777777777776654  3 356677777777777


Q ss_pred             CccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCccc-CCCccc
Q 046844          726 CNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFE-GPIPVE  804 (967)
Q Consensus       726 ~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~-g~ip~~  804 (967)
                      +|++.+..|..+                                            ..++.|+.|++++|+++ +.+|..
T Consensus       430 ~n~l~~~~~~~~--------------------------------------------~~l~~L~~L~l~~n~l~~~~~p~~  465 (570)
T 2z63_A          430 HTHTRVAFNGIF--------------------------------------------NGLSSLEVLKMAGNSFQENFLPDI  465 (570)
T ss_dssp             TSCCEECCTTTT--------------------------------------------TTCTTCCEEECTTCEEGGGEECSC
T ss_pred             CCcccccchhhh--------------------------------------------hcCCcCcEEECcCCcCccccchhh
Confidence            777765554221                                            13566788888888887 678889


Q ss_pred             ccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCCC
Q 046844          805 MGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTST  877 (967)
Q Consensus       805 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~  877 (967)
                      ++.+++|++|+|++|++++.+|..|+++++|+.||+++|++++.+|..+.+++.|+.+++++|+++|.+|...
T Consensus       466 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.4e-47  Score=452.40  Aligned_cols=472  Identities=20%  Similarity=0.277  Sum_probs=268.4

Q ss_pred             CcCCCCCCCCCCCccc---ceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCC------CC-----C
Q 046844           17 KLSQWSSHQSSDCCDW---SGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLF------KG-----F   82 (967)
Q Consensus        17 ~l~~w~~~~~~~~c~w---~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~------~~-----~   82 (967)
                      ..++|  ..++|||.|   .||+|+..|||++|+|+++.+.|.+  ++++++|++|++|+|++|.+      .+     .
T Consensus        56 ~~~~W--~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~l--p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~  131 (636)
T 4eco_A           56 PGANW--NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV--PDAIGQLTELEVLALGSHGEKVNERLFGPKGISA  131 (636)
T ss_dssp             --CCC--CCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEE--CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCT
T ss_pred             cCCCC--CCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcC--ChHHhcCccceEEECcCCccccCCcccccccccc
Confidence            45689  667899999   9999987799999999999999999  78999999999999999975      11     0


Q ss_pred             CCCccccCCCCCCEEeCCCCCCCccCChhccC-CCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcC--Ccc
Q 046844           83 QIPSRLGNLTNLTYLNLSQGGFAGEIPTEISS-LTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLD--RVD  159 (967)
Q Consensus        83 ~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~-l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~--~~~  159 (967)
                      .+|...  +.+|+ ++++++.+.+.+|..++. +..+..+++... .+.             ......++.+.+.  .+.
T Consensus       132 ~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~-~~~-------------~~~~~~l~~l~l~~~~n~  194 (636)
T 4eco_A          132 NMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQK-SIK-------------KSSRITLKDTQIGQLSNN  194 (636)
T ss_dssp             TCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSC-CCC-------------CCCCCCCCTTTTTCCSCE
T ss_pred             CchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccc-ccc-------------cccccchhhhhhccccCC
Confidence            245443  56677 788888777777766552 112222222210 000             0000111111111  111


Q ss_pred             CCCcchhHHHHhcCCCCccEEEccCCCCCCC-----------------Cccccc--CCCCCCEEEccCCCCCCcchhhhc
Q 046844          160 LSASGTEWCKALSFLPNLQVLSLSGCDLSGP-----------------INHYLA--KSRSLSVIRLHYNYGLSSGTEFLA  220 (967)
Q Consensus       160 l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~~~~~~~~~l~  220 (967)
                      ++.    .+..+.++++|++|++++|.+++.                 +|..++  ++++|++|++++|.+.+.+|..++
T Consensus       195 l~~----ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          195 ITF----VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             EEE----ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             Ccc----CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            211    123344455555555555555553                 455555  555555555555555555555555


Q ss_pred             CCCCCCEEeccCCC-CCC-ccchhccCC------CCCCEEeccCCCCCCCCCC---CCCCCCCCCEEEccCCCCCCCccc
Q 046844          221 HLTNLKALDLSECG-LQG-KFPEKILHV------PTLETLDLSINQLLQGSLP---NFPKNSSLRDLILSHTGLSGTLPD  289 (967)
Q Consensus       221 ~l~~L~~L~Ls~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~  289 (967)
                      ++++|++|++++|. +++ .+|..++.+      ++|++|++++|.+.  .++   .+..+++|++|++++|.+.|.+| 
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-  347 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-  347 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence            55555555555555 554 455555444      55555555555544  222   24455555555555555555555 


Q ss_pred             cccCCCCCCEEEccCCCCCCCCCccccCCCC-CcEEEccCccccccCccccccC---cccEEECCCCCCCCCCChhhhh-
Q 046844          290 SIGNLENLTRVEVSSCNFTGPIPPSMANLTQ-LFHMDFSSNHFFGPIPSLHKSR---NLNNLDLSFNNLSGGISSTFWE-  364 (967)
Q Consensus       290 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~---~L~~L~L~~n~l~~~~~~~~~~-  364 (967)
                      .++.+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+...   +|++|++++|.+.+.+|.. +. 
T Consensus       348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~  424 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDP  424 (636)
T ss_dssp             CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCT
T ss_pred             hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh-hcc
Confidence            5555556666666666555 45555555555 666666666655 333332221   4566666666665555544 33 


Q ss_pred             ------cccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCC-------CcccEEEeeCCcCCCC
Q 046844          365 ------QLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSS-------SVLFDLDLSGNRLEGP  431 (967)
Q Consensus       365 ------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-------~~L~~L~l~~n~l~~~  431 (967)
                            .+++|++|++++|.++...+..+..+++|++|++++|++. .+|.......       ++|+.|++++|.++ .
T Consensus       425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~  502 (636)
T 4eco_A          425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K  502 (636)
T ss_dssp             TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-B
T ss_pred             cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-c
Confidence                  4556666666666666322223344666666666666666 3332222111       26666666666666 5


Q ss_pred             CChhhh-ccCCCCCEEECCCCcccccccCCCCCccCCC-CCCCCCccEEEC------cCCccCCCCCcchhccCCCCcce
Q 046844          432 VPISIF-FELRNLYTLDLSSNKFSRLKLASSKPRAIPI-LKNQSQLSVLDI------SDNQISGEVPNWIWEVGSGNLKF  503 (967)
Q Consensus       432 i~~~~~-~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~-l~~~~~L~~L~L------s~n~i~~~~~~~~~~~~~~~L~~  503 (967)
                      +|..++ ..+++|+.|++++|+++.          +|. +..+++|++|++      ++|++.+.+|..+..+  ++|++
T Consensus       503 lp~~~~~~~l~~L~~L~Ls~N~l~~----------ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l--~~L~~  570 (636)
T 4eco_A          503 LSDDFRATTLPYLVGIDLSYNSFSK----------FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC--PSLTQ  570 (636)
T ss_dssp             CCGGGSTTTCTTCCEEECCSSCCSS----------CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC--SSCCE
T ss_pred             cChhhhhccCCCcCEEECCCCCCCC----------cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC--CCCCE
Confidence            665553 366777777777776652          333 556677777777      4566667777666543  34666


Q ss_pred             eecccccccCcCCCCCCCCccEEeCCCCCCC
Q 046844          504 LNLSHNLVVSLQEPYSISGIRFLDLHSNQLR  534 (967)
Q Consensus       504 L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~  534 (967)
                      |++++|.++.+|.... ++|+.|++++|++.
T Consensus       571 L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          571 LQIGSNDIRKVNEKIT-PNISVLDIKDNPNI  600 (636)
T ss_dssp             EECCSSCCCBCCSCCC-TTCCEEECCSCTTC
T ss_pred             EECCCCcCCccCHhHh-CcCCEEECcCCCCc
Confidence            6666666655544322 45555555555444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.8e-45  Score=446.62  Aligned_cols=325  Identities=20%  Similarity=0.189  Sum_probs=221.5

Q ss_pred             ceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCCCCCeeeC-CCCCCCCCCCCcc------------------------
Q 046844           33 SGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNL-GFTLFKGFQIPSR------------------------   87 (967)
Q Consensus        33 ~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~L-s~n~~~~~~lp~~------------------------   87 (967)
                      .||+|+..+||+.|+|+++.+.|.+  ++++++|++|++|+| ++|.+.|. .|-.                        
T Consensus       315 ~GV~C~~~~~V~~L~Ls~~~L~G~i--p~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~  391 (876)
T 4ecn_A          315 PGVDLDNNGRVTGLSLAGFGAKGRV--PDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMF  391 (876)
T ss_dssp             TTEEECTTSCEEEEECTTTCCEEEE--CGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHH
T ss_pred             CceEecCCCCEEEEECccCCCCCcC--chHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhh
Confidence            9999987799999999999999999  889999999999999 77765443 1110                        


Q ss_pred             ---------------------------ccCCCCCCEEeCCC--CCCCccCChhccCCCCCCEEeCCCCCCCccccccccc
Q 046844           88 ---------------------------LGNLTNLTYLNLSQ--GGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIA  138 (967)
Q Consensus        88 ---------------------------l~~l~~L~~L~Ls~--~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~  138 (967)
                                                 ......++.+.+..  |.+++ +|..+++|++|++|++++|. ++..   .+.
T Consensus       392 l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~-Lsg~---~i~  466 (876)
T 4ecn_A          392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSP-FTYD---NIA  466 (876)
T ss_dssp             TCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCC-CCGG---GBS
T ss_pred             hccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCc-CCCC---ccc
Confidence                                       01222334444443  67776 99999999999999999964 3310   000


Q ss_pred             cHHHHhcCCCCCCEEEcCCccCCCcchhHHHHhc--CCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCC-CCC-c
Q 046844          139 NLSLFLQNLTELTELHLDRVDLSASGTEWCKALS--FLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNY-GLS-S  214 (967)
Q Consensus       139 ~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~--~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~-~~~-~  214 (967)
                      .   ..        +..+.+..   ....+..+.  .+++|++|+|++|.+.+.+|..+.++++|++|++++|. +.+ .
T Consensus       467 ~---~~--------~~~s~n~~---~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~  532 (876)
T 4ecn_A          467 V---DW--------EDANSDYA---KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ  532 (876)
T ss_dssp             S---SC--------SCTTSHHH---HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHH
T ss_pred             c---cc--------cccccccc---cccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccccc
Confidence            0   00        00000000   011233444  78888888888888888888888899999999999987 777 7


Q ss_pred             chhhhcCCC-------CCCEEeccCCCCCCccch--hccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCC
Q 046844          215 GTEFLAHLT-------NLKALDLSECGLQGKFPE--KILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSG  285 (967)
Q Consensus       215 ~~~~l~~l~-------~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  285 (967)
                      +|..++.++       +|++|++++|.++ .+|.  .+.++++|++|++++|.+.  .++.+..+++|+.|++++|.+. 
T Consensus       533 iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp~~~~L~~L~~L~Ls~N~l~-  608 (876)
T 4ecn_A          533 LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-  608 (876)
T ss_dssp             HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC--BCCCCCTTSEESEEECCSSCCS-
T ss_pred             chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc--cchhhcCCCcceEEECcCCccc-
Confidence            777666554       8888999888888 7777  8888888888888888876  4446777778888888888777 


Q ss_pred             CccccccCCCC-CCEEEccCCCCCCCCCccccCCCC--CcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhh
Q 046844          286 TLPDSIGNLEN-LTRVEVSSCNFTGPIPPSMANLTQ--LFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTF  362 (967)
Q Consensus       286 ~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  362 (967)
                      .+|..+..+++ |++|++++|.++ .+|..+..++.  |+.|++++|.+.+.+|.+....                  . 
T Consensus       609 ~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l------------------~-  668 (876)
T 4ecn_A          609 EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM------------------D-  668 (876)
T ss_dssp             CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT------------------T-
T ss_pred             cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh------------------c-
Confidence            67777777777 888888877777 56666655543  7777777777666544322000                  0 


Q ss_pred             hhcccCccEEEcCCCcCCCCcChhc-cCCCCCCEEeCcCCcCc
Q 046844          363 WEQLLNLQIVVLGHNSLSGSIPRSL-FLLPNLEMLQLSNNQFE  404 (967)
Q Consensus       363 ~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~  404 (967)
                      ...+++|+.|++++|.++ .+|..+ ..+++|+.|++++|++.
T Consensus       669 ~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          669 DYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT  710 (876)
T ss_dssp             TCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred             cccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence            012335555666666555 334433 35666666666666665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.5e-46  Score=440.80  Aligned_cols=482  Identities=18%  Similarity=0.146  Sum_probs=259.5

Q ss_pred             CCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEc
Q 046844          223 TNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEV  302 (967)
Q Consensus       223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  302 (967)
                      ++|++|++++|.+++..|..|.++++|++|++++|++.......|..+++|++|++++|.+.+..+..++.+++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            45555555555555444445555555555555555444333333444444444444444444443334444444444444


Q ss_pred             cCCCCCC-CCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCC
Q 046844          303 SSCNFTG-PIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG  381 (967)
Q Consensus       303 s~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  381 (967)
                      ++|.+++ ..|..+.+++                       +|++|++++|.+.+.++...+..+++|++|++++|.+++
T Consensus       106 s~n~l~~~~~~~~~~~l~-----------------------~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLT-----------------------NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCT-----------------------TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CCCcccccchhhhhhccC-----------------------CccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            4444442 1233333444                       445555555543334443336667777777777777776


Q ss_pred             CcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCC
Q 046844          382 SIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASS  461 (967)
Q Consensus       382 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  461 (967)
                      ..|..+..+++|++|+++.|.+.                          .+|..++..+++|++|++++|+++.+...  
T Consensus       163 ~~~~~l~~l~~L~~L~l~~n~~~--------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--  214 (549)
T 2z81_A          163 YQSQSLKSIRDIHHLTLHLSESA--------------------------FLLEIFADILSSVRYLELRDTNLARFQFS--  214 (549)
T ss_dssp             ECTTTTTTCSEEEEEEEECSBST--------------------------THHHHHHHSTTTBSEEEEESCBCTTCCCC--
T ss_pred             cChhhhhccccCceEecccCccc--------------------------ccchhhHhhcccccEEEccCCcccccccc--
Confidence            66666666666666666666554                          22223333445555555555544432111  


Q ss_pred             CCccCCCCCCCCCccEEECcCCccCCCCCcchhcc--CCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCC
Q 046844          462 KPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEV--GSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPY  539 (967)
Q Consensus       462 ~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~  539 (967)
                         ..+....+++|+.|++++|.+++..+..+...  ..++|+.+++++|.+..++.....             ......
T Consensus       215 ---~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-------------~~~~~~  278 (549)
T 2z81_A          215 ---PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS-------------ESDVVS  278 (549)
T ss_dssp             ---CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC-------------TTTCCC
T ss_pred             ---ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc-------------chhhhh
Confidence               11112344556666666666554333322111  112333444444333322111000             000001


Q ss_pred             CCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCC
Q 046844          540 MSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSST  619 (967)
Q Consensus       540 ~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  619 (967)
                      ..++++.+++.++.+.....                     ...++..+....+|+.|++++|++. .+|..+       
T Consensus       279 ~l~~L~~L~l~~~~i~~~~~---------------------~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~-------  329 (549)
T 2z81_A          279 ELGKVETVTIRRLHIPQFYL---------------------FYDLSTVYSLLEKVKRITVENSKVF-LVPCSF-------  329 (549)
T ss_dssp             CCTTCCEEEEESCBCSCGGG---------------------SCCCCHHHHHSTTCCEEEEESSCCC-CCCHHH-------
T ss_pred             hhcccccccccccccchhhh---------------------cccchhhhhhcccceEEEeccCccc-cCCHHH-------
Confidence            12233333333332221100                     0011112223345555555555554 444433       


Q ss_pred             ccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCc---ccccCCCCCCEEECCCCccccccc--hhhhcCCCCC
Q 046844          620 LEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP---KSLANCNMLQVLDLRSNYISDNFP--CWLRNASSLQ  694 (967)
Q Consensus       620 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~  694 (967)
                                         +..+++|++|++++|++++.+|   ..++.+++|++|++++|++++..+  ..+..+++|+
T Consensus       330 -------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~  390 (549)
T 2z81_A          330 -------------------SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT  390 (549)
T ss_dssp             -------------------HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred             -------------------HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence                               2334455555555555544332   224555666666666666665432  4466666666


Q ss_pred             EEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEc
Q 046844          695 VLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVK  774 (967)
Q Consensus       695 ~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  774 (967)
                      +|++++|++++.   |..+..+++|+.|++++|++++ +|.                                       
T Consensus       391 ~L~Ls~N~l~~l---p~~~~~~~~L~~L~Ls~N~l~~-l~~---------------------------------------  427 (549)
T 2z81_A          391 SLDISRNTFHPM---PDSCQWPEKMRFLNLSSTGIRV-VKT---------------------------------------  427 (549)
T ss_dssp             EEECTTCCCCCC---CSCCCCCTTCCEEECTTSCCSC-CCT---------------------------------------
T ss_pred             EEECCCCCCccC---ChhhcccccccEEECCCCCccc-ccc---------------------------------------
Confidence            666666666632   6666666777777777777652 120                                       


Q ss_pred             cceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCcccc
Q 046844          775 GIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLA  854 (967)
Q Consensus       775 ~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~  854 (967)
                             ..++.|+.||+++|++++.+    +.+++|++|||++|+++ .||. .+.+++|++|||++|++++.+|..+.
T Consensus       428 -------~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~  494 (549)
T 2z81_A          428 -------CIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFD  494 (549)
T ss_dssp             -------TSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGG
T ss_pred             -------hhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHh
Confidence                   02345788888888888754    57889999999999998 6887 57899999999999999999999999


Q ss_pred             CCCCCCeEEccCCccccCCCC
Q 046844          855 SLNFLSVLNLSYNNLVGKIPT  875 (967)
Q Consensus       855 ~l~~L~~l~ls~N~l~g~ip~  875 (967)
                      .++.|++|++++|+++|.+|.
T Consensus       495 ~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          495 RLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             GCTTCCEEECCSSCBCCCHHH
T ss_pred             cCcccCEEEecCCCccCCCcc
Confidence            999999999999999998884

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.1e-44  Score=423.89  Aligned_cols=502  Identities=16%  Similarity=0.157  Sum_probs=287.2

Q ss_pred             CCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCE
Q 046844          148 TELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKA  227 (967)
Q Consensus       148 ~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  227 (967)
                      +.....+.+++.++..+..    +  .++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..|+++++|++
T Consensus         5 ~~~~~c~~~~~~l~~ip~~----~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   78 (549)
T 2z81_A            5 DASGVCDGRSRSFTSIPSG----L--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH   78 (549)
T ss_dssp             CTTSEEECTTSCCSSCCSC----C--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCceEECCCCcccccccc----C--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCE
Confidence            3334455566666554321    1  257777777777777766677777777777777777777766677777777777


Q ss_pred             EeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCC-CCCCCCCCCCEEEccCCCCCCCcc-ccccCCCCCCEEEccCC
Q 046844          228 LDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSL-PNFPKNSSLRDLILSHTGLSGTLP-DSIGNLENLTRVEVSSC  305 (967)
Q Consensus       228 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n  305 (967)
                      |++++|.+++..|..++++++|++|++++|.+..... +.+..+++|++|++++|.+.+.+| ..+..+++|++|++++|
T Consensus        79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  158 (549)
T 2z81_A           79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL  158 (549)
T ss_dssp             EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence            7777777776666667777777777777776654333 345556666666666665333333 35555666666666666


Q ss_pred             CCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCc--
Q 046844          306 NFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSI--  383 (967)
Q Consensus       306 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--  383 (967)
                      .+++..|..+..+++|++|+++.|.+                       . .++..++..+++|++|++++|.+++..  
T Consensus       159 ~l~~~~~~~l~~l~~L~~L~l~~n~~-----------------------~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  214 (549)
T 2z81_A          159 SLRNYQSQSLKSIRDIHHLTLHLSES-----------------------A-FLLEIFADILSSVRYLELRDTNLARFQFS  214 (549)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSBS-----------------------T-THHHHHHHSTTTBSEEEEESCBCTTCCCC
T ss_pred             cccccChhhhhccccCceEecccCcc-----------------------c-ccchhhHhhcccccEEEccCCcccccccc
Confidence            66555555555555555555555443                       2 333433445666666666666665431  


Q ss_pred             C-hhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCC
Q 046844          384 P-RSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSK  462 (967)
Q Consensus       384 ~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~  462 (967)
                      + .....+++|+.|++++|.+.+..+.                     .++.. +..+++|+.+++++|.+..+..-.  
T Consensus       215 ~~~~~~~~~~L~~L~l~~n~l~~~~~~---------------------~l~~~-~~~~~~L~~l~l~~~~~~~~~~~~--  270 (549)
T 2z81_A          215 PLPVDEVSSPMKKLAFRGSVLTDESFN---------------------ELLKL-LRYILELSEVEFDDCTLNGLGDFN--  270 (549)
T ss_dssp             CCSSCCCCCCCCEEEEESCEEEHHHHH---------------------HHHGG-GGGCTTCCEEEEESCEEECCSCCC--
T ss_pred             ccchhhhhhcccceeccccccchhHHH---------------------HHHHH-hhhhcccccccccccccccccccc--
Confidence            1 1122345566666666555432221                     01111 134455555555555544321100  


Q ss_pred             CccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCC
Q 046844          463 PRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSP  542 (967)
Q Consensus       463 ~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  542 (967)
                      ....+.+..+.+|+.|+++++.+..                          ......++.              .....+
T Consensus       271 ~~~~~~~~~l~~L~~L~l~~~~i~~--------------------------~~~~~~l~~--------------~~~~~~  310 (549)
T 2z81_A          271 PSESDVVSELGKVETVTIRRLHIPQ--------------------------FYLFYDLST--------------VYSLLE  310 (549)
T ss_dssp             CCTTTCCCCCTTCCEEEEESCBCSC--------------------------GGGSCCCCH--------------HHHHST
T ss_pred             ccchhhhhhhcccccccccccccch--------------------------hhhcccchh--------------hhhhcc
Confidence            0011113334445555555544321                          000000000              000012


Q ss_pred             CCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhh-hcCCCCcEEEcccCcCCCCCCcccccCCCCCcc
Q 046844          543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESV-CKATNFQVLDLSNNNLSGTIPACLITKSSSTLE  621 (967)
Q Consensus       543 ~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~-~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~  621 (967)
                      +++.+++++|+++.                           +|..+ ..+++|++|++++|++++.+|....        
T Consensus       311 ~L~~L~l~~n~l~~---------------------------ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------  355 (549)
T 2z81_A          311 KVKRITVENSKVFL---------------------------VPCSFSQHLKSLEFLDLSENLMVEEYLKNSA--------  355 (549)
T ss_dssp             TCCEEEEESSCCCC---------------------------CCHHHHHHCTTCCEEECCSSCCCHHHHHHHT--------
T ss_pred             cceEEEeccCcccc---------------------------CCHHHHhcCccccEEEccCCccccccccchh--------
Confidence            33333333333333                           33344 4688999999999998865542210        


Q ss_pred             EEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCc--ccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEcc
Q 046844          622 VLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP--KSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLR  699 (967)
Q Consensus       622 ~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  699 (967)
                                     . +..+++|++|++++|++++..+  ..+..+++|++||+++|++++ +|..+..+++|++|+++
T Consensus       356 ---------------~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls  418 (549)
T 2z81_A          356 ---------------C-KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLS  418 (549)
T ss_dssp             ---------------C-TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECT
T ss_pred             ---------------h-hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECC
Confidence                           0 2233444444444444443321  234555555555555555553 44455555566666666


Q ss_pred             CCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceee
Q 046844          700 SNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIK  779 (967)
Q Consensus       700 ~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  779 (967)
                      +|++++.   |..+  .++|+.||+++|++++.++                                             
T Consensus       419 ~N~l~~l---~~~~--~~~L~~L~Ls~N~l~~~~~---------------------------------------------  448 (549)
T 2z81_A          419 STGIRVV---KTCI--PQTLEVLDVSNNNLDSFSL---------------------------------------------  448 (549)
T ss_dssp             TSCCSCC---CTTS--CTTCSEEECCSSCCSCCCC---------------------------------------------
T ss_pred             CCCcccc---cchh--cCCceEEECCCCChhhhcc---------------------------------------------
Confidence            6655533   2222  2467777777777654321                                             


Q ss_pred             ecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCC
Q 046844          780 LLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIP  850 (967)
Q Consensus       780 ~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip  850 (967)
                         .++.|+.|||++|+++ .||. .+.++.|++|||++|++++.+|..|+++++|+.||+++|.+++.+|
T Consensus       449 ---~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          449 ---FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             ---CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ---cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence               3556788888888887 6776 5778999999999999999999999999999999999999999887

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-43  Score=422.79  Aligned_cols=268  Identities=19%  Similarity=0.133  Sum_probs=230.0

Q ss_pred             eeeecCC-cccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeC
Q 046844          572 YFVAANN-SLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDL  650 (967)
Q Consensus       572 ~l~l~~n-~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L  650 (967)
                      .+++.++ .+.+.+|..+..+++|+.|++++|.++ .+|..+...   +|+.|++++|.+. .+|..   .+++|++|++
T Consensus       261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~---~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l  332 (570)
T 2z63_A          261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF---GWQHLELVNCKFG-QFPTL---KLKSLKRLTF  332 (570)
T ss_dssp             EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC---CCSEEEEESCBCS-SCCBC---BCSSCCEEEE
T ss_pred             hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC---CccEEeeccCccc-ccCcc---cccccCEEeC
Confidence            3566666 667778888999999999999999998 688877554   8999999999998 77753   5789999999


Q ss_pred             CCCccCCCCcccccCCCCCCEEECCCCcccccc--chhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCcc
Q 046844          651 SGNQLQGVVPKSLANCNMLQVLDLRSNYISDNF--PCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNK  728 (967)
Q Consensus       651 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~  728 (967)
                      ++|.+.+..+.  ..+++|++|++++|++++..  |..+.++++|++|++++|++++..   ..+..+++|+.|++++|+
T Consensus       333 ~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~l~~L~~L~l~~n~  407 (570)
T 2z63_A          333 TSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHSN  407 (570)
T ss_dssp             ESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE---EEEETCTTCCEEECTTSE
T ss_pred             cCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc---ccccccCCCCEEEccCCc
Confidence            99999887765  78999999999999999865  788999999999999999999874   348899999999999999


Q ss_pred             CcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCC
Q 046844          729 FSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRF  808 (967)
Q Consensus       729 l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l  808 (967)
                      +.+..|...                                           ...++.|+.|++++|++++.+|..++.+
T Consensus       408 l~~~~~~~~-------------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l  444 (570)
T 2z63_A          408 LKQMSEFSV-------------------------------------------FLSLRNLIYLDISHTHTRVAFNGIFNGL  444 (570)
T ss_dssp             EESCTTSCT-------------------------------------------TTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred             cccccchhh-------------------------------------------hhcCCCCCEEeCcCCcccccchhhhhcC
Confidence            987655211                                           1246789999999999999999999999


Q ss_pred             CCCcEEECCCCCCc-ccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC-CcCCccCCCc
Q 046844          809 RSLYALNMSHNALT-GSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTS  886 (967)
Q Consensus       809 ~~L~~L~Ls~N~l~-g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~  886 (967)
                      ++|++|+|++|.++ +.+|..++.+++|+.||+++|++++.+|..+.++++|++|++++|++++.+|.. ..+..+....
T Consensus       445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  524 (570)
T 2z63_A          445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW  524 (570)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence            99999999999998 789999999999999999999999999999999999999999999999987753 2334444555


Q ss_pred             cCCCCCCCC
Q 046844          887 YEGNKGLYG  895 (967)
Q Consensus       887 ~~gn~~lcg  895 (967)
                      +.+|+.-|.
T Consensus       525 l~~N~~~~~  533 (570)
T 2z63_A          525 LHTNPWDCS  533 (570)
T ss_dssp             CCSSCBCCC
T ss_pred             ecCCcccCC
Confidence            677765554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.9e-43  Score=422.47  Aligned_cols=525  Identities=20%  Similarity=0.165  Sum_probs=387.2

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEec
Q 046844          175 PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDL  254 (967)
Q Consensus       175 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  254 (967)
                      +++++|+|++|.+++..+..|.++++|++|+|++|.+.+..+.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            37888999999988877788899999999999999888887888899999999999999998777778889999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCCEEEccCCCCCC-CccccccCCCCCCEEEccCCCCCCCCCccccCCCCC----cEEEccCc
Q 046844          255 SINQLLQGSLPNFPKNSSLRDLILSHTGLSG-TLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQL----FHMDFSSN  329 (967)
Q Consensus       255 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L----~~L~L~~n  329 (967)
                      ++|++.......|..+++|++|++++|.+.+ ..|..++.+++|++|++++|++++..+..+..+.++    ..++++.|
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            9998877766678888999999999998875 457788889999999999999987777777665544    36788888


Q ss_pred             cccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCC------CCcChhccCCCCCCEEeCcCCcC
Q 046844          330 HFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLS------GSIPRSLFLLPNLEMLQLSNNQF  403 (967)
Q Consensus       330 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~l~~l~~L~~L~L~~n~l  403 (967)
                      .+....+.......++.+++.+|.....+....+..+..++...+..+...      ......+..+..+...++..+..
T Consensus       212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~  291 (635)
T 4g8a_A          212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL  291 (635)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred             cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence            887766666666677888888887665555555667777776665443322      11222222333333333322221


Q ss_pred             ccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCC
Q 046844          404 ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDN  483 (967)
Q Consensus       404 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n  483 (967)
                      .....                      .++ ..|..+.+++.+++.++.+..+.          .+....+++.|++++|
T Consensus       292 ~~~~~----------------------~~~-~~~~~~~~l~~l~~~~~~~~~~~----------~~~~~~~L~~L~l~~~  338 (635)
T 4g8a_A          292 DYYLD----------------------GII-DLFNCLTNVSSFSLVSVTIERVK----------DFSYNFGWQHLELVNC  338 (635)
T ss_dssp             CSCEE----------------------ECT-TTTGGGTTCSEEEEESCEEEECG----------GGGSCCCCSEEEEESC
T ss_pred             ccccc----------------------chh-hhhhhhccccccccccccccccc----------ccccchhhhhhhcccc
Confidence            11100                      111 12244556666666666554321          1344456677777777


Q ss_pred             ccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCC-----CCCCCceeeccCCcCCCCC
Q 046844          484 QISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPY-----MSPNTSYVDYSNNNFTSIP  558 (967)
Q Consensus       484 ~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~ls~n~l~~i~  558 (967)
                      .+.+..+..     ...++.++++.|.+........+++|+.+++++|.+....+.     ...+++++++..+.+..++
T Consensus       339 ~~~~~~~~~-----l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~  413 (635)
T 4g8a_A          339 KFGQFPTLK-----LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS  413 (635)
T ss_dssp             EESSCCCCB-----CTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC
T ss_pred             cccCcCccc-----chhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc
Confidence            665443322     234677777777666665555677777777777776542221     2356777777777766555


Q ss_pred             cchhccccccceeeeeecCCcccccCC-hhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCC
Q 046844          559 ADIGNFMSETEYFYFVAANNSLAGVIP-ESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDT  637 (967)
Q Consensus       559 ~~~~~~~~~l~~~~l~l~~n~l~~~~p-~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~  637 (967)
                      ..+. .+..++.  +++..+......+ ..+..+.+++.+++++|.+.+..|..+....  +|+.|++++|++.+.++..
T Consensus       414 ~~~~-~l~~L~~--l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~--~L~~L~Ls~N~~~~~~~~~  488 (635)
T 4g8a_A          414 SNFL-GLEQLEH--LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS--SLEVLKMAGNSFQENFLPD  488 (635)
T ss_dssp             SCCT-TCTTCCE--EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT--TCCEEECTTCEEGGGEECS
T ss_pred             cccc-ccccccc--hhhhhccccccccccccccccccccccccccccccccccccccch--hhhhhhhhhcccccccCch
Confidence            4433 2444444  7777777666544 4577889999999999999987787776665  9999999999865544333


Q ss_pred             CCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCC-
Q 046844          638 IFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSW-  716 (967)
Q Consensus       638 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l-  716 (967)
                      .|..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..|..|.++++|++|+|++|++++..  |..+..+ 
T Consensus       489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~l~  566 (635)
T 4g8a_A          489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK--KQELQHFP  566 (635)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCC--SSCTTCCC
T ss_pred             hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCC--HHHHHhhh
Confidence            4999999999999999999999999999999999999999999999999999999999999999999987  8888888 


Q ss_pred             CCCcEEecCCccCcCcCcHHHHHHHhhc
Q 046844          717 PLLQIVDLACNKFSGRLSQKWLLTMMVA  744 (967)
Q Consensus       717 ~~L~~Ldls~N~l~g~~p~~~~~~~~~~  744 (967)
                      ++|+.|++++|+|+|.+...|+..++..
T Consensus       567 ~~L~~L~L~~Np~~C~C~~~~~~~wl~~  594 (635)
T 4g8a_A          567 SSLAFLNLTQNDFACTCEHQSFLQWIKD  594 (635)
T ss_dssp             TTCCEEECTTCCBCCSGGGHHHHHHHHH
T ss_pred             CcCCEEEeeCCCCcccCCcHHHHHHHHh
Confidence            6899999999999999998888776644

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-43  Score=416.28  Aligned_cols=471  Identities=20%  Similarity=0.191  Sum_probs=332.2

Q ss_pred             cEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCC
Q 046844          178 QVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSIN  257 (967)
Q Consensus       178 ~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  257 (967)
                      ++|++++|.++. +|..+.  ++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            467777777774 454444  78888888888888777778888888888888888888777888888888888888888


Q ss_pred             CCCCCCCCCCCCCCCCCEEEccCCCCCC-CccccccCCCCCCEEEccCCCCCCCCCccccCCCCC--cEEEccCccc--c
Q 046844          258 QLLQGSLPNFPKNSSLRDLILSHTGLSG-TLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQL--FHMDFSSNHF--F  332 (967)
Q Consensus       258 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~  332 (967)
                      ++..  ++.. .+++|++|++++|.+++ .+|..++.+++|++|++++|.+++   ..+..+++|  ++|++++|.+  .
T Consensus        80 ~l~~--lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLVK--ISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCCE--EECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             ceee--cCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            7764  3333 67888888888888876 467888888899999999888875   356667777  8888888888  5


Q ss_pred             ccCccccccC--cccEEECCCCCCCCCCChhhhhcccCccEEEcCCCc-------CCCCcChhccCCCCCCEEeCcCCcC
Q 046844          333 GPIPSLHKSR--NLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNS-------LSGSIPRSLFLLPNLEMLQLSNNQF  403 (967)
Q Consensus       333 ~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~L~~n~l  403 (967)
                      +..|..+...  ....+++++|.+.+.++...+..+++|+.+++++|.       +.+.++ .+..+++|+.|++++|.+
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l  232 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET  232 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence            5555443332  244567788887777776667778888888888876       444444 567777777777777766


Q ss_pred             cccccccc--ccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECc
Q 046844          404 ENQLPEIS--NVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDIS  481 (967)
Q Consensus       404 ~~~~~~~~--~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls  481 (967)
                      .+......  ....++|+.|++++|.+.|.+|..+|..                            ....+++|+.++++
T Consensus       233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~----------------------------~~~~l~~L~~l~l~  284 (520)
T 2z7x_B          233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY----------------------------SGTSLKALSIHQVV  284 (520)
T ss_dssp             EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC----------------------------CSCCCCEEEEEEEE
T ss_pred             CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhc----------------------------ccccCceeEecccc
Confidence            54221100  0011234444444444443333322100                            01556677777777


Q ss_pred             CCccCCCCC-cchhcc-CCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCc
Q 046844          482 DNQISGEVP-NWIWEV-GSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPA  559 (967)
Q Consensus       482 ~n~i~~~~~-~~~~~~-~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~  559 (967)
                      +|.+  .+| .++... ...+++.|++++|.+...+....+++|++|++                               
T Consensus       285 ~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L-------------------------------  331 (520)
T 2z7x_B          285 SDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF-------------------------------  331 (520)
T ss_dssp             ECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC-------------------------------
T ss_pred             ccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEe-------------------------------
Confidence            7777  444 333322 11245566666555544332223333444333                               


Q ss_pred             chhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCC--CCCcccccCCCCCccEEECCCCcCcccCCCC
Q 046844          560 DIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSG--TIPACLITKSSSTLEVLNLGRNNLNGTLSDT  637 (967)
Q Consensus       560 ~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~  637 (967)
                                      ++|++++.+|..+..+++|++|++++|++++  .+|..+....  +|++|++++|++++.+|..
T Consensus       332 ----------------s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~--~L~~L~Ls~N~l~~~l~~~  393 (520)
T 2z7x_B          332 ----------------SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK--SLQQLDISQNSVSYDEKKG  393 (520)
T ss_dssp             ----------------CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT--TCCEEECCSSCCBCCGGGC
T ss_pred             ----------------ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC--CCCEEECCCCcCCcccccc
Confidence                            3444444455566778889999999999885  4556666655  8999999999998768877


Q ss_pred             CCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCC-CCCC
Q 046844          638 IFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRN-KVSW  716 (967)
Q Consensus       638 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~-~~~l  716 (967)
                      .|..+++|++|++++|++++..|..+.  ++|++|++++|+++ .+|.++..+++|++|++++|++++.   |.. +..+
T Consensus       394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l---~~~~~~~l  467 (520)
T 2z7x_B          394 DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSV---PDGIFDRL  467 (520)
T ss_dssp             SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC---CTTTTTTC
T ss_pred             hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCcc---CHHHhccC
Confidence            688899999999999999988777664  79999999999999 5777777999999999999999964   554 8899


Q ss_pred             CCCcEEecCCccCcCcCcHHHH-HHHhh
Q 046844          717 PLLQIVDLACNKFSGRLSQKWL-LTMMV  743 (967)
Q Consensus       717 ~~L~~Ldls~N~l~g~~p~~~~-~~~~~  743 (967)
                      ++|+.|++++|+++|.++..++ ..+..
T Consensus       468 ~~L~~L~l~~N~~~c~c~~~~~~~~~~~  495 (520)
T 2z7x_B          468 TSLQKIWLHTNPWDCSCPRIDYLSRWLN  495 (520)
T ss_dssp             TTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred             CcccEEECcCCCCcccCCchHHHHHHHH
Confidence            9999999999999999998777 55543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.7e-44  Score=429.52  Aligned_cols=467  Identities=19%  Similarity=0.278  Sum_probs=289.4

Q ss_pred             CCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCC------C------CCCccccCCCCCcEEEccCccccccCccc
Q 046844          271 SSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFT------G------PIPPSMANLTQLFHMDFSSNHFFGPIPSL  338 (967)
Q Consensus       271 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~------~------~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  338 (967)
                      ..++.|+|+++.+.|.+|.+++++++|++|+|++|.+.      +      .+|...  +..|+ ++++.+.+.+.++..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            46788888888888888888888888888888888651      1      222222  33444 555555555544432


Q ss_pred             cccC--cccEEECCCCCCCCCCChhhhhcccCccEEEcC--CCcCCCCcChhccCCCCCCEEeCcCCcCccc-ccccccc
Q 046844          339 HKSR--NLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLG--HNSLSGSIPRSLFLLPNLEMLQLSNNQFENQ-LPEISNV  413 (967)
Q Consensus       339 ~~~~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~  413 (967)
                      ....  .+..+++....+..       .....++.+.+.  .|.+++ +|..+.++++|++|++++|++++. ++.... 
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-  228 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKK-------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE-  228 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS-
T ss_pred             HHHHHHHHhhcCcccccccc-------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccc-
Confidence            2210  22222222111110       011112212221  355655 666666666666666666666652 000000 


Q ss_pred             CCCcccEEEeeCCcCCCCCChhhhc--cCCCCCEEECCCCcccccccCCCCCccCCC-CCCCCCccEEECcCCc-cCC-C
Q 046844          414 SSSVLFDLDLSGNRLEGPVPISIFF--ELRNLYTLDLSSNKFSRLKLASSKPRAIPI-LKNQSQLSVLDISDNQ-ISG-E  488 (967)
Q Consensus       414 ~~~~L~~L~l~~n~l~~~i~~~~~~--~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~-l~~~~~L~~L~Ls~n~-i~~-~  488 (967)
                        +      -......+.+|..+ .  ++++|++|++++|++.         +.+|. +.++++|++|++++|+ +++ .
T Consensus       229 --~------~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~  290 (636)
T 4eco_A          229 --N------ENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNL---------TKLPTFLKALPEMQLINVACNRGISGEQ  290 (636)
T ss_dssp             --C------TTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTC---------SSCCTTTTTCSSCCEEECTTCTTSCHHH
T ss_pred             --c------cccchhcccCchhh-hhcccCCCCEEEecCCcCC---------ccChHHHhcCCCCCEEECcCCCCCcccc
Confidence              0      00000000144443 4  5666666666666554         34454 6666677777777776 666 5


Q ss_pred             CCcchhcc----CCCCcceeecccccccCcCC---CCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcch
Q 046844          489 VPNWIWEV----GSGNLKFLNLSHNLVVSLQE---PYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADI  561 (967)
Q Consensus       489 ~~~~~~~~----~~~~L~~L~Ls~n~l~~l~~---~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~  561 (967)
                      +|..+...    ..++|++|++++|.++.+|.   ...+++|+.                                    
T Consensus       291 lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~------------------------------------  334 (636)
T 4eco_A          291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM------------------------------------  334 (636)
T ss_dssp             HHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCE------------------------------------
T ss_pred             chHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCE------------------------------------
Confidence            66655432    11223333333333333222   111233333                                    


Q ss_pred             hccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCC-ccEEECCCCcCcccCCCCCCC
Q 046844          562 GNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSST-LEVLNLGRNNLNGTLSDTIFP  640 (967)
Q Consensus       562 ~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~-L~~L~Ls~N~l~~~ip~~~~~  640 (967)
                                 |++++|+++|.+| .+..+++|++|++++|+++ .+|..+....  + |++|++++|.++ .+|.. +.
T Consensus       335 -----------L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~--~~L~~L~Ls~N~l~-~lp~~-~~  397 (636)
T 4eco_A          335 -----------LECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFT--EQVENLSFAHNKLK-YIPNI-FD  397 (636)
T ss_dssp             -----------EECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEEC--TTCCEEECCSSCCS-SCCSC-CC
T ss_pred             -----------EeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhc--ccCcEEEccCCcCc-ccchh-hh
Confidence                       4444444444555 5556667777777777776 6776666655  5 777777777777 67765 55


Q ss_pred             CCC--cccEEeCCCCccCCCCccccc-------CCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCC
Q 046844          641 GDC--GLQILDLSGNQLQGVVPKSLA-------NCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPR  711 (967)
Q Consensus       641 ~l~--~L~~L~L~~N~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~  711 (967)
                      ...  +|++|++++|++++..|..|.       .+++|++|++++|++++..+..+..+++|++|+|++|+++..   |.
T Consensus       398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i---~~  474 (636)
T 4eco_A          398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI---PK  474 (636)
T ss_dssp             TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC---CS
T ss_pred             hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc---CH
Confidence            443  777777777777777777776       677788888888888765555566678888888888888733   44


Q ss_pred             CCCC--------CCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeeccc
Q 046844          712 NKVS--------WPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKV  783 (967)
Q Consensus       712 ~~~~--------l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  783 (967)
                      ....        +++|+.||+++|+++ .+|..++                                          ...
T Consensus       475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~------------------------------------------~~~  511 (636)
T 4eco_A          475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR------------------------------------------ATT  511 (636)
T ss_dssp             SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS------------------------------------------TTT
T ss_pred             HHhccccccccccCCccEEECcCCcCC-ccChhhh------------------------------------------hcc
Confidence            3332        238888888888887 5663320                                          014


Q ss_pred             CCcceEEECCCCcccCCCcccccCCCCCcEEEC------CCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCC
Q 046844          784 PNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNM------SHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLN  857 (967)
Q Consensus       784 ~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~L------s~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  857 (967)
                      ++.|+.|||++|++++ +|..++.+++|+.|+|      ++|++.+.+|..++++++|+.|||++|++ +.+|..+.  +
T Consensus       512 l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~  587 (636)
T 4eco_A          512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--P  587 (636)
T ss_dssp             CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--T
T ss_pred             CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--C
Confidence            5678899999999998 8999999999999999      56889999999999999999999999999 78898876  7


Q ss_pred             CCCeEEccCCccc
Q 046844          858 FLSVLNLSYNNLV  870 (967)
Q Consensus       858 ~L~~l~ls~N~l~  870 (967)
                      .|+.||+++|++.
T Consensus       588 ~L~~L~Ls~N~l~  600 (636)
T 4eco_A          588 NISVLDIKDNPNI  600 (636)
T ss_dssp             TCCEEECCSCTTC
T ss_pred             cCCEEECcCCCCc
Confidence            9999999999765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=9.2e-42  Score=412.62  Aligned_cols=523  Identities=21%  Similarity=0.196  Sum_probs=317.2

Q ss_pred             CCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEc
Q 046844          223 TNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEV  302 (967)
Q Consensus       223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  302 (967)
                      +++++|+|++|.+++..+.+|.++++|++|+|++|++......+|.++++|++|+|++|++++..+.+|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            36778888888877666667777777888888777776666666777777777777777777655566777777777777


Q ss_pred             cCCCCCCCCCccccCCCCCcEEEccCcccccc-Cccccc-cCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCC
Q 046844          303 SSCNFTGPIPPSMANLTQLFHMDFSSNHFFGP-IPSLHK-SRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLS  380 (967)
Q Consensus       303 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  380 (967)
                      ++|++++..+..|+++++|++|++++|.+.+. .|..+. +.+|++|++++|++++..+.. +..+.+++          
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~----------  200 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMP----------  200 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCT----------
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-ccchhhhh----------
Confidence            77777765555677777777777777766542 232222 335555555555554333332 33332221          


Q ss_pred             CCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCC
Q 046844          381 GSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLAS  460 (967)
Q Consensus       381 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  460 (967)
                                .....++++.|.+....+...  ....++.+++.+|.....++...+..++.++...+..+.......- 
T Consensus       201 ----------~~~~~~~ls~n~l~~i~~~~~--~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l-  267 (635)
T 4g8a_A          201 ----------LLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL-  267 (635)
T ss_dssp             ----------TCCCEEECTTCCCCEECTTTT--TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC-
T ss_pred             ----------hhhhhhhcccCcccccCcccc--cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc-
Confidence                      012234455555443222211  2233455555555544344444456666666555443322211000 


Q ss_pred             CCCccCCCCCCCCCccEEECcCCccCCCC---CcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCC
Q 046844          461 SKPRAIPILKNQSQLSVLDISDNQISGEV---PNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNI  537 (967)
Q Consensus       461 ~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~  537 (967)
                       .......+.....+...++..+......   +..+.  ...+++.+++.++.+..+.......+++.|++.+|.+.+..
T Consensus       268 -~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  344 (635)
T 4g8a_A          268 -EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFN--CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP  344 (635)
T ss_dssp             -SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTG--GGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCC
T ss_pred             -ccccccccccccchhhhhhhhhhhcccccchhhhhh--hhcccccccccccccccccccccchhhhhhhcccccccCcC
Confidence             0001111344445555555444332111   11111  12357777777777666655555566777777777666554


Q ss_pred             CCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCC--CCCcccccC
Q 046844          538 PYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSG--TIPACLITK  615 (967)
Q Consensus       538 ~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~--~~p~~~~~~  615 (967)
                      +.....++.+++++|.+...                          .  ....+++|+.|++++|.+..  ..+......
T Consensus       345 ~~~l~~L~~l~l~~n~~~~~--------------------------~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~  396 (635)
T 4g8a_A          345 TLKLKSLKRLTFTSNKGGNA--------------------------F--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT  396 (635)
T ss_dssp             CCBCTTCCEEEEESCCSCCB--------------------------C--CCCBCTTCCEEECCSSCCBEEEECCHHHHSC
T ss_pred             cccchhhhhcccccccCCCC--------------------------c--ccccccccccchhhccccccccccccchhhh
Confidence            44444444444444433221                          1  12345677777777777643  233333333


Q ss_pred             CCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCc-ccccCCCCCCEEECCCCccccccchhhhcCCCCC
Q 046844          616 SSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP-KSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQ  694 (967)
Q Consensus       616 ~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  694 (967)
                      .  +|+.++++.|.+. .++.. |..+++|+.+++..|+.....+ ..|..+++++.++++.|.+++..|..+..+++|+
T Consensus       397 ~--~L~~L~~~~~~~~-~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~  472 (635)
T 4g8a_A          397 I--SLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE  472 (635)
T ss_dssp             S--CCCEEECCSCSEE-EECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred             h--hhhhhhccccccc-ccccc-ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhh
Confidence            3  6777777777766 34444 6666777777777666654433 3456666777777777777666666666666666


Q ss_pred             EEEccCCccce-ecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEE
Q 046844          695 VLVLRSNNFSG-HISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTV  773 (967)
Q Consensus       695 ~L~L~~N~l~~-~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  773 (967)
                      +|++++|++.+ ..  |..+..                                                          
T Consensus       473 ~L~Ls~N~~~~~~~--~~~~~~----------------------------------------------------------  492 (635)
T 4g8a_A          473 VLKMAGNSFQENFL--PDIFTE----------------------------------------------------------  492 (635)
T ss_dssp             EEECTTCEEGGGEE--CSCCTT----------------------------------------------------------
T ss_pred             hhhhhhcccccccC--chhhhh----------------------------------------------------------
Confidence            66666665432 22  333333                                                          


Q ss_pred             ccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccc
Q 046844          774 KGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQL  853 (967)
Q Consensus       774 ~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l  853 (967)
                                ++.|+.|||++|++++.+|..|+++++|++|+|++|+|++.+|..|+++++|++|||++|+|++.+|..+
T Consensus       493 ----------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  562 (635)
T 4g8a_A          493 ----------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  562 (635)
T ss_dssp             ----------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred             ----------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence                      4456667777777777788889999999999999999999989999999999999999999999999999


Q ss_pred             cCC-CCCCeEEccCCccccCCC
Q 046844          854 ASL-NFLSVLNLSYNNLVGKIP  874 (967)
Q Consensus       854 ~~l-~~L~~l~ls~N~l~g~ip  874 (967)
                      ..+ ++|++|++++|+++....
T Consensus       563 ~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          563 QHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TCCCTTCCEEECTTCCBCCSGG
T ss_pred             HhhhCcCCEEEeeCCCCcccCC
Confidence            888 689999999999977543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.8e-43  Score=413.17  Aligned_cols=445  Identities=18%  Similarity=0.170  Sum_probs=250.9

Q ss_pred             CCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECC
Q 046844          271 SSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLS  350 (967)
Q Consensus       271 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~  350 (967)
                      ++|++|++++|.+.+..|..|..+++|++|++++|++++..|..+.++++|++|++++|+++. +|.. .+.+|++|+++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~-~l~~L~~L~L~   98 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH-PTVNLKHLDLS   98 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC-CCCCCSEEECC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc-ccCCccEEecc
Confidence            455555555555655555566666666666666666665556666666666666666666653 3333 44566666666


Q ss_pred             CCCCCC-CCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCC--CEEeCcCCcC--ccccccccccCCCcccEEEeeC
Q 046844          351 FNNLSG-GISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNL--EMLQLSNNQF--ENQLPEISNVSSSVLFDLDLSG  425 (967)
Q Consensus       351 ~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~~~~L~~L~l~~  425 (967)
                      +|.+++ .+|.. ++.+++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+..+.....-......+++++
T Consensus        99 ~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~  174 (520)
T 2z7x_B           99 FNAFDALPICKE-FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT  174 (520)
T ss_dssp             SSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred             CCccccccchhh-hccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence            666664 34444 6666666666666666654   234445555  6666666665  3333221110000222344455


Q ss_pred             CcCCCCCChhhhccCCCCCEEECCCCc----ccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCc
Q 046844          426 NRLEGPVPISIFFELRNLYTLDLSSNK----FSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNL  501 (967)
Q Consensus       426 n~l~~~i~~~~~~~l~~L~~L~Ls~n~----l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L  501 (967)
                      |.+.+.++...+..+++|+.+++++|.    +..+.      +.+|.+..+++|+.|++++|.+++..+..+..      
T Consensus       175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~------  242 (520)
T 2z7x_B          175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL------SILAKLQTNPKLSNLTLNNIETTWNSFIRILQ------  242 (520)
T ss_dssp             SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH------HHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH------
T ss_pred             Ccchhhhhhhhhhcccceeeccccccccccccceee------cchhhhccccchhhccccccccCHHHHHHHHH------
Confidence            555444444444444555555444443    00000      11222333444444444444333211111000      


Q ss_pred             ceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCccc
Q 046844          502 KFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLA  581 (967)
Q Consensus       502 ~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~  581 (967)
                                     ....++|++                                               +++++|+++
T Consensus       243 ---------------~~~~~~L~~-----------------------------------------------L~l~~n~l~  260 (520)
T 2z7x_B          243 ---------------LVWHTTVWY-----------------------------------------------FSISNVKLQ  260 (520)
T ss_dssp             ---------------HHHTSSCSE-----------------------------------------------EEEEEEEEE
T ss_pred             ---------------HhhhCcccE-----------------------------------------------EEeeccccc
Confidence                           000112333                                               333333333


Q ss_pred             ccCChhh-----hcCCCCcEEEcccCcCCCCCC-cccccC-CCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCc
Q 046844          582 GVIPESV-----CKATNFQVLDLSNNNLSGTIP-ACLITK-SSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ  654 (967)
Q Consensus       582 ~~~p~~~-----~~~~~L~~L~Ls~N~l~~~~p-~~~~~~-~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~  654 (967)
                      |.+|..+     ..+++|+.+++++|.+  .+| ..+... ...+|+.|++++|.+.+ ++.  +..+++|++|++++|+
T Consensus       261 ~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~Ls~n~  335 (520)
T 2z7x_B          261 GQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH-MLC--PSKISPFLHLDFSNNL  335 (520)
T ss_dssp             SCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC-CCC--CSSCCCCCEEECCSSC
T ss_pred             CccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc-ccc--hhhCCcccEEEeECCc
Confidence            3333333     5677788888888887  455 233222 01168888888887762 221  2567778888888888


Q ss_pred             cCCCCcccccCCCCCCEEECCCCcccc--ccchhhhcCCCCCEEEccCCccceecCCCC-CCCCCCCCcEEecCCccCcC
Q 046844          655 LQGVVPKSLANCNMLQVLDLRSNYISD--NFPCWLRNASSLQVLVLRSNNFSGHISCPR-NKVSWPLLQIVDLACNKFSG  731 (967)
Q Consensus       655 l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~-~~~~l~~L~~Ldls~N~l~g  731 (967)
                      +++..|..+..+++|++|++++|++++  .+|.++.++++|++|++++|++++.+  |. .+..+++|+.|++++|++  
T Consensus       336 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l--~~~~~~~l~~L~~L~Ls~N~l--  411 (520)
T 2z7x_B          336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE--KKGDCSWTKSLLSLNMSSNIL--  411 (520)
T ss_dssp             CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG--GGCSCCCCTTCCEEECCSSCC--
T ss_pred             cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc--ccchhccCccCCEEECcCCCC--
Confidence            887777788888888888888888876  45567777777777777777777633  32 244455555555555554  


Q ss_pred             cCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCC
Q 046844          732 RLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSL  811 (967)
Q Consensus       732 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L  811 (967)
                                                                                        ++.+|..+.  ++|
T Consensus       412 ------------------------------------------------------------------~~~~~~~l~--~~L  423 (520)
T 2z7x_B          412 ------------------------------------------------------------------TDTIFRCLP--PRI  423 (520)
T ss_dssp             ------------------------------------------------------------------CGGGGGSCC--TTC
T ss_pred             ------------------------------------------------------------------Ccchhhhhc--ccC
Confidence                                                                              444444433  466


Q ss_pred             cEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCcc-ccCCCCCCeEEccCCccccCCC
Q 046844          812 YALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSYNNLVGKIP  874 (967)
Q Consensus       812 ~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~l~ls~N~l~g~ip  874 (967)
                      +.|||++|+++ .+|..+..+++|+.|||++|++++ +|.. +..++.|++|++++|++++..+
T Consensus       424 ~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence            77777777776 666666677777777777777773 4443 6677777777777777776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.2e-42  Score=421.89  Aligned_cols=408  Identities=18%  Similarity=0.226  Sum_probs=225.2

Q ss_pred             CCCCCCccccccCCCCCCEEEccCCCCCCC-CCccccCCCCCcEEEccCccccccCcccc---ccCcccEEECCCCCCCC
Q 046844          281 TGLSGTLPDSIGNLENLTRVEVSSCNFTGP-IPPSMANLTQLFHMDFSSNHFFGPIPSLH---KSRNLNNLDLSFNNLSG  356 (967)
Q Consensus       281 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~~~L~~L~L~~n~l~~  356 (967)
                      |.+++ +|..++++++|++|+|++|++++. ++..+.        ..+.|...+.+|..+   .+.+|++|++++|.+.+
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~--------~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~  505 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWE--------DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT  505 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS--------CTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCccccccc--------ccccccccccCChhhhhccCCCCCEEECcCCCCCc
Confidence            55554 566666666666666666666651 000000        000011111244333   23456666666666655


Q ss_pred             CCChhhhhcccCccEEEcCCCc-CCC-CcChhccCCC-------CCCEEeCcCCcCccccccccccCCCcccEEEeeCCc
Q 046844          357 GISSTFWEQLLNLQIVVLGHNS-LSG-SIPRSLFLLP-------NLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNR  427 (967)
Q Consensus       357 ~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  427 (967)
                      .+|.. +.++++|++|++++|. +++ .+|..+..++       +|+.|++++|++.                       
T Consensus       506 ~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-----------------------  561 (876)
T 4ecn_A          506 QLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-----------------------  561 (876)
T ss_dssp             SCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-----------------------
T ss_pred             cChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-----------------------
Confidence            66654 5666666666666665 655 5555444333       6666666666555                       


Q ss_pred             CCCCCCh-hhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCC-cceee
Q 046844          428 LEGPVPI-SIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGN-LKFLN  505 (967)
Q Consensus       428 l~~~i~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~-L~~L~  505 (967)
                         .+|. ..|..+++|+.|++++|+++.+          |.+..+++|+.|++++|+++ .+|..+...  ++ |+.|+
T Consensus       562 ---~ip~~~~l~~L~~L~~L~Ls~N~l~~l----------p~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l--~~~L~~L~  625 (876)
T 4ecn_A          562 ---EFPASASLQKMVKLGLLDCVHNKVRHL----------EAFGTNVKLTDLKLDYNQIE-EIPEDFCAF--TDQVEGLG  625 (876)
T ss_dssp             ---BCCCHHHHTTCTTCCEEECTTSCCCBC----------CCCCTTSEESEEECCSSCCS-CCCTTSCEE--CTTCCEEE
T ss_pred             ---ccCChhhhhcCCCCCEEECCCCCcccc----------hhhcCCCcceEEECcCCccc-cchHHHhhc--cccCCEEE
Confidence               2222 1124445555555555544321          22444555555555555555 444443322  12 44444


Q ss_pred             cccccccCcCCCCC---CCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccc
Q 046844          506 LSHNLVVSLQEPYS---ISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAG  582 (967)
Q Consensus       506 Ls~n~l~~l~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~  582 (967)
                      +++|.++.+|....   .++|+.|++++|++++.+|....                 .+                     
T Consensus       626 Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~-----------------~l---------------------  667 (876)
T 4ecn_A          626 FSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC-----------------SM---------------------  667 (876)
T ss_dssp             CCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS-----------------CT---------------------
T ss_pred             CcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchh-----------------hh---------------------
Confidence            44444333332211   12355555555555554331100                 00                     


Q ss_pred             cCChhhhcCCCCcEEEcccCcCCCCCCcccc-cCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcc
Q 046844          583 VIPESVCKATNFQVLDLSNNNLSGTIPACLI-TKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPK  661 (967)
Q Consensus       583 ~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~  661 (967)
                          ....+++|+.|++++|+++ .+|..+. .+.  +|+.|+|++|+++ .+|...|....                 .
T Consensus       668 ----~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~--~L~~L~Ls~N~L~-~ip~~~~~~~~-----------------~  722 (876)
T 4ecn_A          668 ----DDYKGINASTVTLSYNEIQ-KFPTELFATGS--PISTIILSNNLMT-SIPENSLKPKD-----------------G  722 (876)
T ss_dssp             ----TTCCCCCEEEEECCSSCCC-SCCHHHHHTTC--CCSEEECCSCCCS-CCCTTSSSCTT-----------------S
T ss_pred             ----ccccCCCcCEEEccCCcCC-ccCHHHHccCC--CCCEEECCCCcCC-ccChHHhcccc-----------------c
Confidence                0012346777888888777 6666554 333  7777777777777 66666444321                 0


Q ss_pred             cccCCCCCCEEECCCCccccccchhhh--cCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHH
Q 046844          662 SLANCNMLQVLDLRSNYISDNFPCWLR--NASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLL  739 (967)
Q Consensus       662 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~  739 (967)
                      .+.+|++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +  |..+..+++|+.|+|++|+           
T Consensus       723 ~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-l--p~~l~~L~~L~~L~Ls~N~-----------  787 (876)
T 4ecn_A          723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-F--PTQPLNSSQLKAFGIRHQR-----------  787 (876)
T ss_dssp             CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-C--CCGGGGCTTCCEEECCCCB-----------
T ss_pred             cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-c--chhhhcCCCCCEEECCCCC-----------
Confidence            1122335555555555555 2444443  45555555555555554 2  5555555556666665553           


Q ss_pred             HHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCC
Q 046844          740 TMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHN  819 (967)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N  819 (967)
                                                                         ++++|++.+.+|..|+.+++|+.|+|++|
T Consensus       788 ---------------------------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N  816 (876)
T 4ecn_A          788 ---------------------------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSN  816 (876)
T ss_dssp             ---------------------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             ---------------------------------------------------CcccccccccChHHHhcCCCCCEEECCCC
Confidence                                                               25678888889999999999999999999


Q ss_pred             CCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCcc
Q 046844          820 ALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL  869 (967)
Q Consensus       820 ~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l  869 (967)
                      ++ +.||..+.  ++|+.|||++|.+...-+..+.....+..+.+++|.+
T Consensus       817 ~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          817 DI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             CC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             CC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence            99 78999876  6899999999998877767766665666677777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.6e-40  Score=392.25  Aligned_cols=472  Identities=20%  Similarity=0.173  Sum_probs=322.9

Q ss_pred             CCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEe
Q 046844          174 LPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLD  253 (967)
Q Consensus       174 l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  253 (967)
                      +...++++++++.++. +|..+.  ++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            3445788888888876 454443  7888888888888888878888888888888888888877788888888888888


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCEEEccCCCCCC-CccccccCCCCCCEEEccCCCCCCCCCccccCCCCC--cEEEccCcc
Q 046844          254 LSINQLLQGSLPNFPKNSSLRDLILSHTGLSG-TLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQL--FHMDFSSNH  330 (967)
Q Consensus       254 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~L~~n~  330 (967)
                      +++|++...  +.. .+++|++|++++|.+.+ ..|..++++++|++|++++|.+++.   .+..+++|  ++|++++|.
T Consensus       107 Ls~N~l~~l--p~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          107 VSHNRLQNI--SCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             CTTSCCCEE--CSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred             CCCCcCCcc--Ccc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence            888887643  333 78888899998888886 3467888999999999999988753   34445555  899999888


Q ss_pred             c--cccCccccccC--cccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCC----CCcChhccCCCCCCEEeCcCCc
Q 046844          331 F--FGPIPSLHKSR--NLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLS----GSIPRSLFLLPNLEMLQLSNNQ  402 (967)
Q Consensus       331 l--~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~  402 (967)
                      +  ++..|..+...  ..-.+++++|.+.+.++...+..+++|+.+++++|...    ......+..+++|+.+++.++.
T Consensus       181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~  260 (562)
T 3a79_B          181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE  260 (562)
T ss_dssp             CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred             ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence            8  66655544332  22256778888877777665677888888888887521    0122345667777777777665


Q ss_pred             Ccccccc--ccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEEC
Q 046844          403 FENQLPE--ISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDI  480 (967)
Q Consensus       403 l~~~~~~--~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~L  480 (967)
                      +.+....  .......+|++|++++|.++|.+|..+|...                            ...++.|+.+++
T Consensus       261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~----------------------------~~~L~~L~~~~~  312 (562)
T 3a79_B          261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS----------------------------ETALKSLMIEHV  312 (562)
T ss_dssp             ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCC----------------------------SCSCCEEEEEEE
T ss_pred             CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcc----------------------------cccchheehhhc
Confidence            5432110  0001123555555555555555544332110                            123334444444


Q ss_pred             cCCccCCCCC-cchhcc-CCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCC
Q 046844          481 SDNQISGEVP-NWIWEV-GSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIP  558 (967)
Q Consensus       481 s~n~i~~~~~-~~~~~~-~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~  558 (967)
                      +.+.+  .+| .++... ...+++.|++++|.+..++....+++|++                                 
T Consensus       313 ~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~---------------------------------  357 (562)
T 3a79_B          313 KNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF---------------------------------  357 (562)
T ss_dssp             EECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE---------------------------------
T ss_pred             cccee--ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceE---------------------------------
Confidence            44444  233 111111 11234444444444333221112223333                                 


Q ss_pred             cchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCC--CCCcccccCCCCCccEEECCCCcCcccCCC
Q 046844          559 ADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSG--TIPACLITKSSSTLEVLNLGRNNLNGTLSD  636 (967)
Q Consensus       559 ~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~  636 (967)
                                    +++++|.+++.+|..+..+++|++|++++|++++  .+|..+....  +|++|++++|++++.+|.
T Consensus       358 --------------L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~~  421 (562)
T 3a79_B          358 --------------LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS--SLETLDVSLNSLNSHAYD  421 (562)
T ss_dssp             --------------EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT--TCCEEECTTSCCBSCCSS
T ss_pred             --------------EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC--CCCEEECCCCcCCCccCh
Confidence                          4444444555556667778899999999999985  2234455555  899999999999977888


Q ss_pred             CCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCC-CCC
Q 046844          637 TIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRN-KVS  715 (967)
Q Consensus       637 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~-~~~  715 (967)
                      ..|..+++|++|++++|++++..|..+.  ++|++|++++|+++. +|.++.++++|++|+|++|++++.   |.. +..
T Consensus       422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l---~~~~~~~  495 (562)
T 3a79_B          422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSV---PDGVFDR  495 (562)
T ss_dssp             CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCC---CTTSTTT
T ss_pred             hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCC---CHHHHhc
Confidence            7799999999999999999987776654  799999999999995 666667999999999999999965   555 889


Q ss_pred             CCCCcEEecCCccCcCcCcHHHHH
Q 046844          716 WPLLQIVDLACNKFSGRLSQKWLL  739 (967)
Q Consensus       716 l~~L~~Ldls~N~l~g~~p~~~~~  739 (967)
                      +++|+.|++++|+++|.+|..++.
T Consensus       496 l~~L~~L~l~~N~~~c~c~~~~~~  519 (562)
T 3a79_B          496 LTSLQYIWLHDNPWDCTCPGIRYL  519 (562)
T ss_dssp             CTTCCCEECCSCCBCCCHHHHHHH
T ss_pred             CCCCCEEEecCCCcCCCcchHHHH
Confidence            999999999999999999988773

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.6e-40  Score=390.98  Aligned_cols=207  Identities=18%  Similarity=0.258  Sum_probs=127.2

Q ss_pred             hcCCCCcEEEcccCcCCCCCCcc-cccC-CCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCC
Q 046844          589 CKATNFQVLDLSNNNLSGTIPAC-LITK-SSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANC  666 (967)
Q Consensus       589 ~~~~~L~~L~Ls~N~l~~~~p~~-~~~~-~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  666 (967)
                      ..++.|+.++++.|.+  .+|.. +... ...+|+.|++++|.+. .++  .+..+++|++|++++|++++..|..+.++
T Consensus       302 ~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  376 (562)
T 3a79_B          302 TALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFI-HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTL  376 (562)
T ss_dssp             CSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCC-CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSC
T ss_pred             ccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcc-ccc--CccCCCCceEEECCCCccccchhhhhccc
Confidence            3445555666666665  44421 1111 0115777777777765 222  12556777777777777777777777777


Q ss_pred             CCCCEEECCCCccccc--cchhhhcCCCCCEEEccCCccceecCCCC-CCCCCCCCcEEecCCccCcCcCcHHHHHHHhh
Q 046844          667 NMLQVLDLRSNYISDN--FPCWLRNASSLQVLVLRSNNFSGHISCPR-NKVSWPLLQIVDLACNKFSGRLSQKWLLTMMV  743 (967)
Q Consensus       667 ~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~~N~l~~~~~~p~-~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~  743 (967)
                      ++|++|++++|++++.  +|..+.++++|++|++++|++++.+  |. .+..+++|+.|++++|++              
T Consensus       377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~~l~~L~~L~l~~n~l--------------  440 (562)
T 3a79_B          377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA--YDRTCAWAESILVLNLSSNML--------------  440 (562)
T ss_dssp             SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC--SSCCCCCCTTCCEEECCSSCC--------------
T ss_pred             CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc--ChhhhcCcccCCEEECCCCCC--------------
Confidence            7777777777777763  3455667777777777777776633  32 344455555555555554              


Q ss_pred             cccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcc
Q 046844          744 AETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTG  823 (967)
Q Consensus       744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g  823 (967)
                                                                            ++.+|..+.  ++|+.|+|++|+++ 
T Consensus       441 ------------------------------------------------------~~~~~~~l~--~~L~~L~L~~N~l~-  463 (562)
T 3a79_B          441 ------------------------------------------------------TGSVFRCLP--PKVKVLDLHNNRIM-  463 (562)
T ss_dssp             ------------------------------------------------------CGGGGSSCC--TTCSEEECCSSCCC-
T ss_pred             ------------------------------------------------------Ccchhhhhc--CcCCEEECCCCcCc-
Confidence                                                                  444444333  46667777777776 


Q ss_pred             cCCccccCCCCCCeEeCcCccccccCCcc-ccCCCCCCeEEccCCccccCCC
Q 046844          824 SIPSSFGNLKEIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSYNNLVGKIP  874 (967)
Q Consensus       824 ~ip~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~l~ls~N~l~g~ip  874 (967)
                      .||..+.++++|+.|||++|++++ +|.. +..++.|+++++++|+++|.+|
T Consensus       464 ~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          464 SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            566666677777777777777773 4444 6677777777777777776665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4e-39  Score=368.58  Aligned_cols=394  Identities=23%  Similarity=0.307  Sum_probs=195.6

Q ss_pred             cccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcc
Q 046844          339 HKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVL  418 (967)
Q Consensus       339 ~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L  418 (967)
                      ....+|++|++++|.+ +.+|.. ++++++|++|++++|.+.+.+|..++.+.+|+.+++..|..            ..+
T Consensus         8 ~~~~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l   73 (454)
T 1jl5_A            8 VSNTFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQA   73 (454)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTC
T ss_pred             cccccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCC
Confidence            3445777788888877 677776 78888888888888888888888888777765555444431            234


Q ss_pred             cEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCC
Q 046844          419 FDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGS  498 (967)
Q Consensus       419 ~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  498 (967)
                      ++|++++|.+++ +|.    ..++|++|++++|+++.+          |.  ..++|++|++++|++++ ++..     .
T Consensus        74 ~~L~l~~~~l~~-lp~----~~~~L~~L~l~~n~l~~l----------p~--~~~~L~~L~l~~n~l~~-l~~~-----~  130 (454)
T 1jl5_A           74 HELELNNLGLSS-LPE----LPPHLESLVASCNSLTEL----------PE--LPQSLKSLLVDNNNLKA-LSDL-----P  130 (454)
T ss_dssp             SEEECTTSCCSC-CCS----CCTTCSEEECCSSCCSSC----------CC--CCTTCCEEECCSSCCSC-CCSC-----C
T ss_pred             CEEEecCCcccc-CCC----CcCCCCEEEccCCcCCcc----------cc--ccCCCcEEECCCCccCc-ccCC-----C
Confidence            555666665552 332    125666666666666532          21  12466667777766663 2221     1


Q ss_pred             CCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCC
Q 046844          499 GNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANN  578 (967)
Q Consensus       499 ~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n  578 (967)
                      ++|++|++++|.++.+|....+++|++|++++|++++ +|...+++++|++++|+++.+|                    
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l~--------------------  189 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELP--------------------  189 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCC--------------------
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCcCc--------------------
Confidence            3567777777777666655556777777777777775 4444456666666666555544                    


Q ss_pred             cccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCC
Q 046844          579 SLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGV  658 (967)
Q Consensus       579 ~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  658 (967)
                              .++.+++|++|++++|++++ +|...   .  +|++|++++|.++ .+|.  |..+++|++|++++|++++ 
T Consensus       190 --------~~~~l~~L~~L~l~~N~l~~-l~~~~---~--~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-  251 (454)
T 1jl5_A          190 --------ELQNLPFLTAIYADNNSLKK-LPDLP---L--SLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKT-  251 (454)
T ss_dssp             --------CCTTCTTCCEEECCSSCCSS-CCCCC---T--TCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSS-
T ss_pred             --------cccCCCCCCEEECCCCcCCc-CCCCc---C--cccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCc-
Confidence                    23445556666666666653 33321   1  5666666666665 5552  5556666666666666654 


Q ss_pred             CcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHH
Q 046844          659 VPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWL  738 (967)
Q Consensus       659 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~  738 (967)
                      +|..   .++|+.|++++|++++ +|..   .++|+.|++++|++++....|      ++|+.|++++|++++. +    
T Consensus       252 l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~------~~L~~L~l~~N~l~~i-~----  313 (454)
T 1jl5_A          252 LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELP------PNLYYLNASSNEIRSL-C----  313 (454)
T ss_dssp             CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCC------TTCCEEECCSSCCSEE-C----
T ss_pred             cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcC------CcCCEEECcCCcCCcc-c----
Confidence            2321   2556666666666655 3322   255666666666665532111      4556666666655431 1    


Q ss_pred             HHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCC
Q 046844          739 LTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSH  818 (967)
Q Consensus       739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~  818 (967)
                                                                 ..++.++.|++++|++++ +|..   +++|++|+|++
T Consensus       314 -------------------------------------------~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~  346 (454)
T 1jl5_A          314 -------------------------------------------DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASF  346 (454)
T ss_dssp             -------------------------------------------CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred             -------------------------------------------CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCC
Confidence                                                       012345556666666654 4443   35566666666


Q ss_pred             CCCcccCCccccCCCCCCeEeCcCccccc--cCCccccCC-------------CCCCeEEccCCcccc--CCCCCC
Q 046844          819 NALTGSIPSSFGNLKEIESLDLSMNNLSG--KIPAQLASL-------------NFLSVLNLSYNNLVG--KIPTST  877 (967)
Q Consensus       819 N~l~g~ip~~~~~l~~L~~LdLs~N~l~g--~ip~~l~~l-------------~~L~~l~ls~N~l~g--~ip~~~  877 (967)
                      |+++ .+|.   .+++|+.||+++|+++|  .+|.++.++             ++|++||+++|+++|  .||...
T Consensus       347 N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl  418 (454)
T 1jl5_A          347 NHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV  418 (454)
T ss_dssp             SCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------------
T ss_pred             Cccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence            6665 3454   34566666666666666  555555555             789999999999998  888653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1e-38  Score=365.28  Aligned_cols=421  Identities=21%  Similarity=0.300  Sum_probs=224.7

Q ss_pred             CCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEEC
Q 046844          270 NSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDL  349 (967)
Q Consensus       270 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L  349 (967)
                      .+.|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++++.+|+.+++..|..          .++++|++
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~----------~~l~~L~l   78 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD----------RQAHELEL   78 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH----------HTCSEEEC
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc----------cCCCEEEe
Confidence            35677777777777 57777778888888888888877777777777777776666665542          25677777


Q ss_pred             CCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCC
Q 046844          350 SFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLE  429 (967)
Q Consensus       350 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  429 (967)
                      ++|.+++ +|..    .++|++|++++|.+++ +|..   .++|++|++++|++.+. +.    .               
T Consensus        79 ~~~~l~~-lp~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~----~---------------  129 (454)
T 1jl5_A           79 NNLGLSS-LPEL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SD----L---------------  129 (454)
T ss_dssp             TTSCCSC-CCSC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CS----C---------------
T ss_pred             cCCcccc-CCCC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cC----C---------------
Confidence            7777764 3321    3567777777777765 4432   35666666666666531 11    0               


Q ss_pred             CCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccc
Q 046844          430 GPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN  509 (967)
Q Consensus       430 ~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n  509 (967)
                                .++|++|++++|+++.          +|.+.++++|++|++++|++++ +|...     ++|++|++++|
T Consensus       130 ----------~~~L~~L~L~~n~l~~----------lp~~~~l~~L~~L~l~~N~l~~-lp~~~-----~~L~~L~L~~n  183 (454)
T 1jl5_A          130 ----------PPLLEYLGVSNNQLEK----------LPELQNSSFLKIIDVDNNSLKK-LPDLP-----PSLEFIAAGNN  183 (454)
T ss_dssp             ----------CTTCCEEECCSSCCSS----------CCCCTTCTTCCEEECCSSCCSC-CCCCC-----TTCCEEECCSS
T ss_pred             ----------CCCCCEEECcCCCCCC----------CcccCCCCCCCEEECCCCcCcc-cCCCc-----ccccEEECcCC
Confidence                      1345555555554442          2234555556666666665553 33322     24666666666


Q ss_pred             cccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhh
Q 046844          510 LVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVC  589 (967)
Q Consensus       510 ~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~  589 (967)
                      .++.++....+++|+.|++++|++++ +|..++++++|++++|.++.+|                            .++
T Consensus       184 ~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~~lp----------------------------~~~  234 (454)
T 1jl5_A          184 QLEELPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILEELP----------------------------ELQ  234 (454)
T ss_dssp             CCSSCCCCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCSSCC----------------------------CCT
T ss_pred             cCCcCccccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCCccc----------------------------ccC
Confidence            66666655556777888888887776 3434456666666666555443                            245


Q ss_pred             cCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCC
Q 046844          590 KATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML  669 (967)
Q Consensus       590 ~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  669 (967)
                      .+++|++|++++|++++ +|...     ++|+.|++++|++++ +|..    .++|++|++++|++++. |..   .++|
T Consensus       235 ~l~~L~~L~l~~N~l~~-l~~~~-----~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls~N~l~~l-~~~---~~~L  299 (454)
T 1jl5_A          235 NLPFLTTIYADNNLLKT-LPDLP-----PSLEALNVRDNYLTD-LPEL----PQSLTFLDVSENIFSGL-SEL---PPNL  299 (454)
T ss_dssp             TCTTCCEEECCSSCCSS-CCSCC-----TTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSEE-SCC---CTTC
T ss_pred             CCCCCCEEECCCCcCCc-ccccc-----cccCEEECCCCcccc-cCcc----cCcCCEEECcCCccCcc-cCc---CCcC
Confidence            57788888888888874 55432     278888888888874 6654    26788888888888763 211   2578


Q ss_pred             CEEECCCCccccccchhhhcC-CCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCC
Q 046844          670 QVLDLRSNYISDNFPCWLRNA-SSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKS  748 (967)
Q Consensus       670 ~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~  748 (967)
                      +.|++++|++++. +    .+ ++|++|++++|++++.   |..   +++|+.||+++|++++ +|.             
T Consensus       300 ~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~l---p~~---~~~L~~L~L~~N~l~~-lp~-------------  354 (454)
T 1jl5_A          300 YYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIEL---PAL---PPRLERLIASFNHLAE-VPE-------------  354 (454)
T ss_dssp             CEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSCC---CCC---CTTCCEEECCSSCCSC-CCC-------------
T ss_pred             CEEECcCCcCCcc-c----CCcCcCCEEECCCCccccc---ccc---CCcCCEEECCCCcccc-ccc-------------
Confidence            8888888888762 2    22 5788888888888863   443   4778888888888763 441             


Q ss_pred             CcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccC--CCcccccCCCCCcEEECCCCCCcccCC
Q 046844          749 GSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEG--PIPVEMGRFRSLYALNMSHNALTGSIP  826 (967)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g--~ip~~~~~l~~L~~L~Ls~N~l~g~ip  826 (967)
                                                        .++.|+.||+++|+++|  .+|..++.+        +.|.+.|.+|
T Consensus       355 ----------------------------------~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~  392 (454)
T 1jl5_A          355 ----------------------------------LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVP  392 (454)
T ss_dssp             ----------------------------------CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC------
T ss_pred             ----------------------------------hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccc
Confidence                                              24567888888888888  777766543        4577888888


Q ss_pred             ccccCCCCCCeEeCcCccccc--cCCccccCCCCCCeEEccCCccccCCCCC
Q 046844          827 SSFGNLKEIESLDLSMNNLSG--KIPAQLASLNFLSVLNLSYNNLVGKIPTS  876 (967)
Q Consensus       827 ~~~~~l~~L~~LdLs~N~l~g--~ip~~l~~l~~L~~l~ls~N~l~g~ip~~  876 (967)
                      ..   +++|+.||+++|+++|  .+|.+      ++.|.+.+|.+.+++|..
T Consensus       393 ~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~  435 (454)
T 1jl5_A          393 EL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFA  435 (454)
T ss_dssp             ----------------------------------------------------
T ss_pred             cc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCccccC
Confidence            74   5789999999999998  78865      455668888888887743

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.1e-37  Score=353.04  Aligned_cols=400  Identities=20%  Similarity=0.198  Sum_probs=258.3

Q ss_pred             EEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCC-CccccCCCCCcEEEccCc
Q 046844          251 TLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPI-PPSMANLTQLFHMDFSSN  329 (967)
Q Consensus       251 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n  329 (967)
                      .++.+++.+...+  .+  .++|++|++++|.+++..|..++.+++|++|++++|.+.+.+ +..+..+++|++|++++|
T Consensus        14 ~~~c~~~~l~~lp--~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           14 NAICINRGLHQVP--EL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             EEECCSSCCSSCC--CC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             ccCcCCCCcccCC--CC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            4555555543322  22  256777777777777666667777777777777777665433 445666777777777777


Q ss_pred             cccccCcccc-ccCcccEEECCCCCCCCCCCh-hhhhcccCccEEEcCCCcCCCCcChh-ccCCCCCCEEeCcCCcCccc
Q 046844          330 HFFGPIPSLH-KSRNLNNLDLSFNNLSGGISS-TFWEQLLNLQIVVLGHNSLSGSIPRS-LFLLPNLEMLQLSNNQFENQ  406 (967)
Q Consensus       330 ~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~  406 (967)
                      .+.+..|..+ .+.+|++|++++|.+++.++. ..+..+++|++|++++|.+++..|.. +..+++|++|++++|++.+.
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            6665544332 233666666666666543221 12445555666666665555544443 45555555555555555443


Q ss_pred             cccccccCCCcccEEEeeCCcCCCCCChhhhccC--CCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCc
Q 046844          407 LPEISNVSSSVLFDLDLSGNRLEGPVPISIFFEL--RNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQ  484 (967)
Q Consensus       407 ~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l--~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~  484 (967)
                      .+.                         .+ ..+  ++|+.|++++|.+..+..........+.+..+++|++|++++|+
T Consensus       170 ~~~-------------------------~l-~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  223 (455)
T 3v47_A          170 CEE-------------------------DL-LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG  223 (455)
T ss_dssp             CTT-------------------------TS-GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred             Chh-------------------------hh-hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence            322                         11 222  34555555555544332211110011113345667777777777


Q ss_pred             cCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhcc
Q 046844          485 ISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNF  564 (967)
Q Consensus       485 i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~  564 (967)
                      +++..|..+....                     ..++++.|++++|.+.+...           ..+            
T Consensus       224 l~~~~~~~~~~~~---------------------~~~~L~~L~l~~~~~~~~~~-----------~~~------------  259 (455)
T 3v47_A          224 FKESMAKRFFDAI---------------------AGTKIQSLILSNSYNMGSSF-----------GHT------------  259 (455)
T ss_dssp             CCHHHHHHHHHHT---------------------TTCCEEEEECTTCTTTSCCT-----------TCC------------
T ss_pred             ccccchhhhhccc---------------------cccceeeEeecccccccccc-----------chh------------
Confidence            7665555544321                     12345555555555443211           001            


Q ss_pred             ccccceeeeeecCCcccccCChhhh--cCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCC
Q 046844          565 MSETEYFYFVAANNSLAGVIPESVC--KATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGD  642 (967)
Q Consensus       565 ~~~l~~~~l~l~~n~l~~~~p~~~~--~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l  642 (967)
                                    .+.+..+..+.  ..++|+.|++++|++++..|..+....  +|++|++++|++++..|.. |..+
T Consensus       260 --------------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~-~~~l  322 (455)
T 3v47_A          260 --------------NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT--DLEQLTLAQNEINKIDDNA-FWGL  322 (455)
T ss_dssp             --------------SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT--TCCEEECTTSCCCEECTTT-TTTC
T ss_pred             --------------hhccCcccccccccccCceEEEecCccccccchhhcccCC--CCCEEECCCCcccccChhH-hcCc
Confidence                          11111111122  246899999999999988888887776  9999999999999666666 9999


Q ss_pred             CcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEE
Q 046844          643 CGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIV  722 (967)
Q Consensus       643 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~L  722 (967)
                      ++|++|+|++|++++..|..|..+++|++|++++|++++..|.+|.++++|++|+|++|++++..  +..+..+++|+.|
T Consensus       323 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L  400 (455)
T 3v47_A          323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP--DGIFDRLTSLQKI  400 (455)
T ss_dssp             TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEE
T ss_pred             ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC--HhHhccCCcccEE
Confidence            99999999999999999999999999999999999999999999999999999999999999865  5677899999999


Q ss_pred             ecCCccCcCcCc-HHHHHHHhh
Q 046844          723 DLACNKFSGRLS-QKWLLTMMV  743 (967)
Q Consensus       723 dls~N~l~g~~p-~~~~~~~~~  743 (967)
                      ++++|+++|.+| ..++..+..
T Consensus       401 ~l~~N~l~~~~~~~~~l~~~l~  422 (455)
T 3v47_A          401 WLHTNPWDCSCPRIDYLSRWLN  422 (455)
T ss_dssp             ECCSSCBCCCTTTTHHHHHHHH
T ss_pred             EccCCCcccCCCcchHHHHHHH
Confidence            999999999999 344444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.9e-36  Score=347.27  Aligned_cols=191  Identities=19%  Similarity=0.171  Sum_probs=142.3

Q ss_pred             CcccEEeCCCCccCCCCcccccCC---CCCCEEECCCCcccc----------ccchhhhc--CCCCCEEEccCCccceec
Q 046844          643 CGLQILDLSGNQLQGVVPKSLANC---NMLQVLDLRSNYISD----------NFPCWLRN--ASSLQVLVLRSNNFSGHI  707 (967)
Q Consensus       643 ~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~----------~~p~~l~~--l~~L~~L~L~~N~l~~~~  707 (967)
                      ++|++|++++|++++..|..+...   ++|+.|++++|.+.+          ..+..+..  .++|+.|++++|++++..
T Consensus       212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  291 (455)
T 3v47_A          212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL  291 (455)
T ss_dssp             CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred             ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence            445555555555554444444322   455555555553322          22223333  357788888888887776


Q ss_pred             CCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcc
Q 046844          708 SCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIF  787 (967)
Q Consensus       708 ~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  787 (967)
                        |..+..+++|+.|++++|++++..|..+                                            ..++.|
T Consensus       292 --~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------------------------------------------~~l~~L  325 (455)
T 3v47_A          292 --KSVFSHFTDLEQLTLAQNEINKIDDNAF--------------------------------------------WGLTHL  325 (455)
T ss_dssp             --TTTTTTCTTCCEEECTTSCCCEECTTTT--------------------------------------------TTCTTC
T ss_pred             --hhhcccCCCCCEEECCCCcccccChhHh--------------------------------------------cCcccC
Confidence              7777778888888888888776555322                                            135678


Q ss_pred             eEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCC
Q 046844          788 TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN  867 (967)
Q Consensus       788 ~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N  867 (967)
                      +.|++++|++++..|..|+.+++|++|+|++|++++.+|..|+++++|+.|||++|++++..+..+..++.|++|++++|
T Consensus       326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence            88888888888888999999999999999999999999999999999999999999999988788899999999999999


Q ss_pred             ccccCCCCCCcC
Q 046844          868 NLVGKIPTSTQL  879 (967)
Q Consensus       868 ~l~g~ip~~~~~  879 (967)
                      +++|.+|....+
T Consensus       406 ~l~~~~~~~~~l  417 (455)
T 3v47_A          406 PWDCSCPRIDYL  417 (455)
T ss_dssp             CBCCCTTTTHHH
T ss_pred             CcccCCCcchHH
Confidence            999999965433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=6.3e-36  Score=342.39  Aligned_cols=357  Identities=19%  Similarity=0.166  Sum_probs=231.4

Q ss_pred             CCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccE
Q 046844          267 FPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNN  346 (967)
Q Consensus       267 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~  346 (967)
                      +..+++|++|++++|.+++. | .++.+++|++|++++|++++. |  +..+++|++|++++|.+++. + +..+++|++
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~  110 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTY  110 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCE
T ss_pred             hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-cCCCCcCCE
Confidence            33456666666666666643 3 456666666666666666543 2  55566666666666665543 2 333445555


Q ss_pred             EECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCC
Q 046844          347 LDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGN  426 (967)
Q Consensus       347 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  426 (967)
                      |++++|++++ ++   ++.+++|++|++++|.+++.   .+..+++|++|++++|+.                       
T Consensus       111 L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~-----------------------  160 (457)
T 3bz5_A          111 LNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKK-----------------------  160 (457)
T ss_dssp             EECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSC-----------------------
T ss_pred             EECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCc-----------------------
Confidence            5555555553 22   44555555555555555542   144555555555555533                       


Q ss_pred             cCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeec
Q 046844          427 RLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNL  506 (967)
Q Consensus       427 ~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L  506 (967)
                        .+.++   +..+++|+.|++++|+++.+          | +..+++|+.|++++|++++. +  +.  ..++|++|++
T Consensus       161 --~~~~~---~~~l~~L~~L~ls~n~l~~l----------~-l~~l~~L~~L~l~~N~l~~~-~--l~--~l~~L~~L~L  219 (457)
T 3bz5_A          161 --ITKLD---VTPQTQLTTLDCSFNKITEL----------D-VSQNKLLNRLNCDTNNITKL-D--LN--QNIQLTFLDC  219 (457)
T ss_dssp             --CCCCC---CTTCTTCCEEECCSSCCCCC----------C-CTTCTTCCEEECCSSCCSCC-C--CT--TCTTCSEEEC
T ss_pred             --ccccc---cccCCcCCEEECCCCcccee----------c-cccCCCCCEEECcCCcCCee-c--cc--cCCCCCEEEC
Confidence              22332   24455555555555555432          2 34455566666666655543 1  11  2245666666


Q ss_pred             ccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCCh
Q 046844          507 SHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPE  586 (967)
Q Consensus       507 s~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~  586 (967)
                      ++|+++.+| ...+++|+.|++++|++++..+..+++++.|++++|+++.                +++++|.+.+.+| 
T Consensus       220 s~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~----------------L~l~~n~~~~~~~-  281 (457)
T 3bz5_A          220 SSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLE----------------IDLTHNTQLIYFQ-  281 (457)
T ss_dssp             CSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSC----------------CCCTTCTTCCEEE-
T ss_pred             cCCcccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCE----------------EECCCCccCCccc-
Confidence            666666655 4446677888888888877766667788888877776542                7778888888877 


Q ss_pred             hhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCC
Q 046844          587 SVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANC  666 (967)
Q Consensus       587 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  666 (967)
                       +..+++|+.|++++|.+.+.+|...   .  .|+.|++++|              ++|++|++++|++++. +  ++.|
T Consensus       282 -~~~l~~L~~L~Ls~n~~l~~l~~~~---~--~L~~L~l~~~--------------~~L~~L~L~~N~l~~l-~--l~~l  338 (457)
T 3bz5_A          282 -AEGCRKIKELDVTHNTQLYLLDCQA---A--GITELDLSQN--------------PKLVYLYLNNTELTEL-D--VSHN  338 (457)
T ss_dssp             -CTTCTTCCCCCCTTCTTCCEEECTT---C--CCSCCCCTTC--------------TTCCEEECTTCCCSCC-C--CTTC
T ss_pred             -ccccccCCEEECCCCcccceeccCC---C--cceEechhhc--------------ccCCEEECCCCccccc-c--cccC
Confidence             4678999999999999887777422   2  5666655444              6899999999999985 3  8999


Q ss_pred             CCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHH
Q 046844          667 NMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKW  737 (967)
Q Consensus       667 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~  737 (967)
                      ++|+.||+++|++++.        +.|..|++++|.++|.       ..+..|+.+|+++|+++|.+|..+
T Consensus       339 ~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          339 TKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             TTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             CcCcEEECCCCCCCCc--------cccccccccCCcEEec-------ceeeecCccccccCcEEEEcChhH
Confidence            9999999999999872        4566778999999986       245678889999999999999765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.8e-34  Score=328.72  Aligned_cols=347  Identities=17%  Similarity=0.176  Sum_probs=233.7

Q ss_pred             CCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcch
Q 046844          414 SSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWI  493 (967)
Q Consensus       414 ~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~  493 (967)
                      .++.|+.|++++|.+++ +| . +..+++|++|++++|+++.+          | +..+++|++|++++|++++. +  +
T Consensus        40 ~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~----------~-~~~l~~L~~L~Ls~N~l~~~-~--~  102 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL----------D-LSQNTNLTYLACDSNKLTNL-D--V  102 (457)
T ss_dssp             HHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC----------C-CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred             HcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE----------c-cccCCCCCEEECcCCCCcee-e--c
Confidence            45677777777777774 44 3 36777777777777777643          2 55667777777777777753 2  2


Q ss_pred             hccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeee
Q 046844          494 WEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYF  573 (967)
Q Consensus       494 ~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l  573 (967)
                      .  ..++|++|++++|.++.++ ...+++|++|++++|++++......+++++|+                         
T Consensus       103 ~--~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~-------------------------  154 (457)
T 3bz5_A          103 T--PLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELD-------------------------  154 (457)
T ss_dssp             T--TCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEE-------------------------
T ss_pred             C--CCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceeccccCCcCCEEE-------------------------
Confidence            2  2345777777777666654 44466666666666666654222334444444                         


Q ss_pred             eecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCC
Q 046844          574 VAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGN  653 (967)
Q Consensus       574 ~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N  653 (967)
                       +++|...+.+  .+..+++|++|++++|++++ +|  +....  +|+.|++++|++++ ++   +..+++|++|++++|
T Consensus       155 -l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~--~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          155 -CHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNK--LLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSN  222 (457)
T ss_dssp             -CTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCT--TCCEEECCSSCCSC-CC---CTTCTTCSEEECCSS
T ss_pred             -CCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCC--CCCEEECcCCcCCe-ec---cccCCCCCEEECcCC
Confidence             4444433333  24556677777777777764 44  33333  67777777777764 32   566677777777777


Q ss_pred             ccCCCCcccccCCCCCCEEECCCCccccccchhhhcCC-------CCCEEEccCCccceecCCCCCCCCCCCCcEEecCC
Q 046844          654 QLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNAS-------SLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLAC  726 (967)
Q Consensus       654 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-------~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~  726 (967)
                      ++++ +|  +..+++|+.|++++|++++..+..+.+++       +|+.|++++|++.|.+  |  ...+++|+.||+++
T Consensus       223 ~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~--~--~~~l~~L~~L~Ls~  295 (457)
T 3bz5_A          223 KLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF--Q--AEGCRKIKELDVTH  295 (457)
T ss_dssp             CCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE--E--CTTCTTCCCCCCTT
T ss_pred             cccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcc--c--ccccccCCEEECCC
Confidence            7776 34  66677777777777777765544443333       4566777777777766  4  46789999999999


Q ss_pred             ccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCccccc
Q 046844          727 NKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMG  806 (967)
Q Consensus       727 N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~  806 (967)
                      |++.|.+|...            .....+                        .....+.|+.|++++|+++|. |  ++
T Consensus       296 n~~l~~l~~~~------------~~L~~L------------------------~l~~~~~L~~L~L~~N~l~~l-~--l~  336 (457)
T 3bz5_A          296 NTQLYLLDCQA------------AGITEL------------------------DLSQNPKLVYLYLNNTELTEL-D--VS  336 (457)
T ss_dssp             CTTCCEEECTT------------CCCSCC------------------------CCTTCTTCCEEECTTCCCSCC-C--CT
T ss_pred             CcccceeccCC------------CcceEe------------------------chhhcccCCEEECCCCccccc-c--cc
Confidence            99988887321            000000                        012457899999999999994 4  99


Q ss_pred             CCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC
Q 046844          807 RFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS  876 (967)
Q Consensus       807 ~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~  876 (967)
                      .++.|+.||+++|+++|        ++.|+.|++++|+++|.     ..+..|..+++++|+++|.||..
T Consensus       337 ~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          337 HNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             TCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             cCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            99999999999999997        35677889999999997     24566888999999999999965

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=5e-35  Score=318.71  Aligned_cols=259  Identities=30%  Similarity=0.490  Sum_probs=217.6

Q ss_pred             CCCcEEEcccCcCCC--CCCcccccCCCCCccEEECCC-CcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCC
Q 046844          592 TNFQVLDLSNNNLSG--TIPACLITKSSSTLEVLNLGR-NNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM  668 (967)
Q Consensus       592 ~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~L~~L~Ls~-N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  668 (967)
                      .+++.|++++|.+++  .+|..+....  +|++|++++ |.+.+.+|.. |..+++|++|+|++|++++.+|..|..+++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~--~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLP--YLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCT--TCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCC--CCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence            456777777777776  6777776655  777777774 7777777766 777778888888888888778888888888


Q ss_pred             CCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCC-CCcEEecCCccCcCcCcHHHHHHHhhcccC
Q 046844          669 LQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWP-LLQIVDLACNKFSGRLSQKWLLTMMVAETK  747 (967)
Q Consensus       669 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~-~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~  747 (967)
                      |++|++++|++++.+|..+.++++|++|++++|+++|.+  |..+..++ +|+.|++++|+++|.+|..+.         
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~---------  195 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIPPTFA---------  195 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGCCCTTCCEEECCSSEEEEECCGGGG---------
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC--CHHHhhhhhcCcEEECcCCeeeccCChHHh---------
Confidence            888888888888888888888888888888888888776  77788877 888888888888877774331         


Q ss_pred             CCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCc
Q 046844          748 SGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPS  827 (967)
Q Consensus       748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~  827 (967)
                                                         .+. |+.|++++|++++.+|..|+.+++|+.|+|++|++++.+|.
T Consensus       196 -----------------------------------~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  239 (313)
T 1ogq_A          196 -----------------------------------NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK  239 (313)
T ss_dssp             -----------------------------------GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred             -----------------------------------CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence                                               233 88899999999999999999999999999999999988887


Q ss_pred             cccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCCCcCCccCCCccCCCCCCCCCCCCCCC
Q 046844          828 SFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNES  902 (967)
Q Consensus       828 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~~~~~c  902 (967)
                       ++.+++|+.|||++|+++|.+|..+..++.|++|++++|+++|.+|...++..+....+.||+.+||.|+. .|
T Consensus       240 -~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          240 -VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             -CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             -ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence             89999999999999999999999999999999999999999999999877788888889999999998875 46

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=8.3e-33  Score=319.55  Aligned_cols=216  Identities=28%  Similarity=0.322  Sum_probs=135.2

Q ss_pred             hcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCC
Q 046844          589 CKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM  668 (967)
Q Consensus       589 ~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  668 (967)
                      ..+++|+.|++++|.+++ ++ .+..+.  +|++|++++|.+.+..|   +..+++|++|++++|++++.  ..+..+++
T Consensus       174 ~~l~~L~~L~l~~n~l~~-~~-~l~~l~--~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~  244 (466)
T 1o6v_A          174 ANLTTLERLDISSNKVSD-IS-VLAKLT--NLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTN  244 (466)
T ss_dssp             TTCTTCCEEECCSSCCCC-CG-GGGGCT--TCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred             ccCCCCCEEECcCCcCCC-Ch-hhccCC--CCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhhhcCCC
Confidence            344555555555555542 22 233333  55555555555553333   34455566666666666543  34556666


Q ss_pred             CCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCC
Q 046844          669 LQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKS  748 (967)
Q Consensus       669 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~  748 (967)
                      |+.|++++|++++..|  +..+++|+.|++++|++++..  +  +..+++|+.|++++|++++..|  +           
T Consensus       245 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~--~~~l~~L~~L~L~~n~l~~~~~--~-----------  305 (466)
T 1o6v_A          245 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--P--LAGLTALTNLELNENQLEDISP--I-----------  305 (466)
T ss_dssp             CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--G--GTTCTTCSEEECCSSCCSCCGG--G-----------
T ss_pred             CCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc--c--ccCCCccCeEEcCCCcccCchh--h-----------
Confidence            6666666666665544  556666666666666666543  2  5566666666666666654332  0           


Q ss_pred             CcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCcc
Q 046844          749 GSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSS  828 (967)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~  828 (967)
                                                       ..++.|+.|++++|++++..|  ++.+++|+.|++++|.+++.  ..
T Consensus       306 ---------------------------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~  348 (466)
T 1o6v_A          306 ---------------------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS  348 (466)
T ss_dssp             ---------------------------------GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred             ---------------------------------cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence                                             134567777777777777655  67777888888888888764  45


Q ss_pred             ccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCcccc
Q 046844          829 FGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG  871 (967)
Q Consensus       829 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g  871 (967)
                      ++++++|+.|++++|++++.+|  +..++.|+.|++++|.++|
T Consensus       349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            7778888888888888887776  7778888888888888877

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.5e-35  Score=317.80  Aligned_cols=274  Identities=30%  Similarity=0.413  Sum_probs=190.9

Q ss_pred             CCCCcCCCCCCCCCCCcc--cceeEeCCC---CcEEEEECCCCCccc--ccCCCCCCcCCCCCCeeeCCC-CCCCCCCCC
Q 046844           14 PSTKLSQWSSHQSSDCCD--WSGVRCDEA---GHVIGLDLSWEPIIG--GLENATGLFDLQYLQSLNLGF-TLFKGFQIP   85 (967)
Q Consensus        14 ~~~~l~~w~~~~~~~~c~--w~gv~C~~~---~~v~~L~L~~~~l~g--~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~lp   85 (967)
                      |+..+++|  ..++|||.  |.||+|+..   ++|++|+|+++.+.|  .+  +..+.++++|++|+|++ |.+.+. +|
T Consensus        20 ~~~~l~~W--~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~--~~~l~~l~~L~~L~L~~~n~l~~~-~p   94 (313)
T 1ogq_A           20 NPTTLSSW--LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI--PSSLANLPYLNFLYIGGINNLVGP-IP   94 (313)
T ss_dssp             CCGGGTTC--CTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC--CGGGGGCTTCSEEEEEEETTEESC-CC
T ss_pred             CcccccCC--CCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc--ChhHhCCCCCCeeeCCCCCccccc-CC
Confidence            34478999  66789999  999999864   799999999999998  67  78999999999999995 888876 89


Q ss_pred             ccccCCCCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcch
Q 046844           86 SRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGT  165 (967)
Q Consensus        86 ~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~  165 (967)
                      ..++++++|++|++++|.+.+.+|..++++++|++|++++|....                                   
T Consensus        95 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-----------------------------------  139 (313)
T 1ogq_A           95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-----------------------------------  139 (313)
T ss_dssp             GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-----------------------------------
T ss_pred             hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-----------------------------------
Confidence            999999999999999999999999999999999999998852110                                   


Q ss_pred             hHHHHhcCCCCccEEEccCCCCCCCCcccccCCC-CCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhcc
Q 046844          166 EWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSR-SLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKIL  244 (967)
Q Consensus       166 ~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~  244 (967)
                      ..+..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+..++ |++|++++|.+++..|..+.
T Consensus       140 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~  218 (313)
T 1ogq_A          140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG  218 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCC
T ss_pred             cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHh
Confidence            0122345566666777777777666677777776 777777777777766676676665 77777777777766666666


Q ss_pred             CCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEE
Q 046844          245 HVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHM  324 (967)
Q Consensus       245 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  324 (967)
                      .+++|++|++++|.+. ...+.+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+
T Consensus       219 ~l~~L~~L~L~~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l  296 (313)
T 1ogq_A          219 SDKNTQKIHLAKNSLA-FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS  296 (313)
T ss_dssp             TTSCCSEEECCSSEEC-CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred             cCCCCCEEECCCCcee-eecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence            6666666666666542 22222344445555555555554444444444555555555555444444433 444444444


Q ss_pred             EccCcc
Q 046844          325 DFSSNH  330 (967)
Q Consensus       325 ~L~~n~  330 (967)
                      ++++|+
T Consensus       297 ~l~~N~  302 (313)
T 1ogq_A          297 AYANNK  302 (313)
T ss_dssp             GTCSSS
T ss_pred             HhcCCC
Confidence            444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.5e-32  Score=314.35  Aligned_cols=346  Identities=27%  Similarity=0.317  Sum_probs=189.6

Q ss_pred             CcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCChhccCCCCCCE
Q 046844           41 GHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVT  120 (967)
Q Consensus        41 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~  120 (967)
                      .+++.|++.++.+.. +   +.+..+++|++|+|++|.+.+  +|. ++++++|++|++++|.+.+ ++. ++++++|++
T Consensus        46 ~~l~~L~l~~~~i~~-l---~~~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~  116 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-I---DGVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIAD-ITP-LANLTNLTG  116 (466)
T ss_dssp             HTCCEEECCSSCCCC-C---TTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred             ccccEEecCCCCCcc-C---cchhhhcCCCEEECCCCccCC--chh-hhccccCCEEECCCCcccc-Chh-hcCCCCCCE
Confidence            467777777766542 2   346667777777777777763  344 6777777777777777763 333 677777777


Q ss_pred             EeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCC
Q 046844          121 LDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRS  200 (967)
Q Consensus       121 L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~  200 (967)
                      |++++|....         ++. +.++++|++|++++|.+....     .+..+++|++|+++ +.+.+..  .+.++++
T Consensus       117 L~L~~n~l~~---------~~~-~~~l~~L~~L~l~~n~l~~~~-----~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~  178 (466)
T 1o6v_A          117 LTLFNNQITD---------IDP-LKNLTNLNRLELSSNTISDIS-----ALSGLTSLQQLSFG-NQVTDLK--PLANLTT  178 (466)
T ss_dssp             EECCSSCCCC---------CGG-GTTCTTCSEEEEEEEEECCCG-----GGTTCTTCSEEEEE-ESCCCCG--GGTTCTT
T ss_pred             EECCCCCCCC---------ChH-HcCCCCCCEEECCCCccCCCh-----hhccCCcccEeecC-CcccCch--hhccCCC
Confidence            7777653211         111 566666666666666655432     35566666666664 3333322  2556666


Q ss_pred             CCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccC
Q 046844          201 LSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSH  280 (967)
Q Consensus       201 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~  280 (967)
                      |++|++++|.+.+.  ..+..+++|++|++++|.+.+..|  ++.+++|++|++++|.+..  .+.+..+++|++|++++
T Consensus       179 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~  252 (466)
T 1o6v_A          179 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN  252 (466)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCS
T ss_pred             CCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc--chhhhcCCCCCEEECCC
Confidence            66666666655443  235556666666666666554433  4455556666655555432  12334445555555555


Q ss_pred             CCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCCh
Q 046844          281 TGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISS  360 (967)
Q Consensus       281 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  360 (967)
                      |.+.+..+  +..+++|++|++++|.+++..+  +..++                       +|++|++++|++.+..+ 
T Consensus       253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~-----------------------~L~~L~L~~n~l~~~~~-  304 (466)
T 1o6v_A          253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT-----------------------ALTNLELNENQLEDISP-  304 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCT-----------------------TCSEEECCSSCCSCCGG-
T ss_pred             Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCCC-----------------------ccCeEEcCCCcccCchh-
Confidence            55543322  4444555555555554443221  44444                       45555555555443222 


Q ss_pred             hhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccC
Q 046844          361 TFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFEL  440 (967)
Q Consensus       361 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l  440 (967)
                        +..+++|++|++++|.+++..|  +..+++|++|++++|++.+. +  ....+++|+.|++++|++++..|   +..+
T Consensus       305 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~---~~~l  374 (466)
T 1o6v_A          305 --ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S--SLANLTNINWLSAGHNQISDLTP---LANL  374 (466)
T ss_dssp             --GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCBCGG---GTTC
T ss_pred             --hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-h--hhccCCCCCEEeCCCCccCccch---hhcC
Confidence              3445555555555555554433  44555555555555555543 1  12244555555555555554444   3667


Q ss_pred             CCCCEEECCCCcccccc
Q 046844          441 RNLYTLDLSSNKFSRLK  457 (967)
Q Consensus       441 ~~L~~L~Ls~n~l~~l~  457 (967)
                      ++|+.|++++|+++.++
T Consensus       375 ~~L~~L~l~~n~~~~~p  391 (466)
T 1o6v_A          375 TRITQLGLNDQAWTNAP  391 (466)
T ss_dssp             TTCCEEECCCEEEECCC
T ss_pred             CCCCEEeccCCcccCCc
Confidence            77777777777777544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=327.11  Aligned_cols=345  Identities=18%  Similarity=0.152  Sum_probs=260.9

Q ss_pred             cEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCC--CCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCc
Q 046844          476 SVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQE--PYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNN  553 (967)
Q Consensus       476 ~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~--~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~  553 (967)
                      +.++.++++++ .+|..+.    ++++.|++++|.++.++.  ...+++|++|++++|.+++..|..+            
T Consensus        14 ~~v~c~~~~l~-~ip~~~~----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~------------   76 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP----TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF------------   76 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC----TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT------------
T ss_pred             CEEEeCCCCcC-cCCCCCC----CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhh------------
Confidence            46777777776 4554332    356777777777666532  2336666666666666665544322            


Q ss_pred             CCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCccc
Q 046844          554 FTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGT  633 (967)
Q Consensus       554 l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~  633 (967)
                               ..+..++.  |++++|.+++..+..+.++++|++|++++|++++..|..+..+.  +|+.|++++|.+++.
T Consensus        77 ---------~~l~~L~~--L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~l~~n~l~~~  143 (477)
T 2id5_A           77 ---------NNLFNLRT--LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY--NLKSLEVGDNDLVYI  143 (477)
T ss_dssp             ---------TTCTTCCE--EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEEECCTTCCEE
T ss_pred             ---------hCCccCCE--EECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc--cCCEEECCCCcccee
Confidence                     22233333  55555555544445566788889999999988877777776665  899999999998855


Q ss_pred             CCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCC
Q 046844          634 LSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNK  713 (967)
Q Consensus       634 ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~  713 (967)
                      .+.. |.++++|++|++++|++++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++.+.+  |...
T Consensus       144 ~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~  220 (477)
T 2id5_A          144 SHRA-FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM--TPNC  220 (477)
T ss_dssp             CTTS-STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE--CTTT
T ss_pred             Chhh-ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc--Cccc
Confidence            5555 888899999999999998877778889999999999999999888888888999999999998887777  7767


Q ss_pred             CCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECC
Q 046844          714 VSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFS  793 (967)
Q Consensus       714 ~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls  793 (967)
                      ....+|+.|++++|++++ +|...+                                           ..++.|+.|||+
T Consensus       221 ~~~~~L~~L~l~~n~l~~-~~~~~~-------------------------------------------~~l~~L~~L~Ls  256 (477)
T 2id5_A          221 LYGLNLTSLSITHCNLTA-VPYLAV-------------------------------------------RHLVYLRFLNLS  256 (477)
T ss_dssp             TTTCCCSEEEEESSCCCS-CCHHHH-------------------------------------------TTCTTCCEEECC
T ss_pred             ccCccccEEECcCCcccc-cCHHHh-------------------------------------------cCccccCeeECC
Confidence            677789999999998874 342221                                           246789999999


Q ss_pred             CCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCC
Q 046844          794 SNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKI  873 (967)
Q Consensus       794 ~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~i  873 (967)
                      +|++++..+..|+.+++|+.|+|++|++++..|..|+++++|+.|||++|++++..+..+..++.|+.|++++|.+.+..
T Consensus       257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             SSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred             CCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence            99999998889999999999999999999999999999999999999999999988888999999999999999998765


Q ss_pred             CCCCcCCccCCCccCCCCCCCCCC
Q 046844          874 PTSTQLQSFSPTSYEGNKGLYGPP  897 (967)
Q Consensus       874 p~~~~~~~~~~~~~~gn~~lcg~~  897 (967)
                      +....+.......+.++...|..|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          337 RLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             GGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             chHhHHhhhhccccCccCceeCCc
Confidence            532111222234456666667543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=317.86  Aligned_cols=321  Identities=19%  Similarity=0.182  Sum_probs=268.9

Q ss_pred             cEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCc
Q 046844          524 RFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNN  603 (967)
Q Consensus       524 ~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~  603 (967)
                      +.++.+++.++..+...++.++.|++++|+++.++...+..+..++.  |++++|.+++..|..+.++++|++|+|++|+
T Consensus        14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~--L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEE--LELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCE--EECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCE--EECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            34555555555444444456677777777777665554455666666  9999999999999999999999999999999


Q ss_pred             CCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCcccccc
Q 046844          604 LSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNF  683 (967)
Q Consensus       604 l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  683 (967)
                      +++..+..+..+.  +|++|+|++|++.+..|.. |..+++|++|++++|.+++..|..|.++++|+.|++++|++++..
T Consensus        92 l~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           92 LKLIPLGVFTGLS--NLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             CCSCCTTSSTTCT--TCCEEECTTSCCCEECTTT-TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CCccCcccccCCC--CCCEEECCCCccccCChhH-ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            9854444566655  9999999999999766666 999999999999999999999999999999999999999999988


Q ss_pred             chhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCc
Q 046844          684 PCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQ  763 (967)
Q Consensus       684 p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  763 (967)
                      +..|.++++|+.|++++|.+.+..  +..+..+++|+.|++++|++.+.+|...+                         
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------------------------  221 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIR--DYSFKRLYRLKVLEISHWPYLDTMTPNCL-------------------------  221 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEEC--TTCSCSCTTCCEEEEECCTTCCEECTTTT-------------------------
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeC--hhhcccCcccceeeCCCCccccccCcccc-------------------------
Confidence            889999999999999999999986  77899999999999999998877764321                         


Q ss_pred             eeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCc
Q 046844          764 FYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMN  843 (967)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N  843 (967)
                                         ....|+.|++++|++++..+..++.+++|+.|+|++|.+++..+..|+++++|+.|+|++|
T Consensus       222 -------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  282 (477)
T 2id5_A          222 -------------------YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG  282 (477)
T ss_dssp             -------------------TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS
T ss_pred             -------------------cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC
Confidence                               1236899999999999766678999999999999999999999999999999999999999


Q ss_pred             cccccCCccccCCCCCCeEEccCCccccCCCCC-CcCCccCCCccCCCCCCCC
Q 046844          844 NLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYEGNKGLYG  895 (967)
Q Consensus       844 ~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lcg  895 (967)
                      ++++..|..+.+++.|+.|++++|++++..|.. ..+..+....+.+|+--|.
T Consensus       283 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            999999999999999999999999999855532 2233444556778886664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=5.6e-31  Score=297.14  Aligned_cols=349  Identities=19%  Similarity=0.138  Sum_probs=183.4

Q ss_pred             cCCCCCCCCCCCcc-cceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCc-cccCCCCCC
Q 046844           18 LSQWSSHQSSDCCD-WSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPS-RLGNLTNLT   95 (967)
Q Consensus        18 l~~w~~~~~~~~c~-w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~-~l~~l~~L~   95 (967)
                      +++|  ..+.+||. |.++.|...    .+.+.........  ...-..++++++|+++++.+.  .+|. .+..+++|+
T Consensus         3 ~~~~--~~~~~C~~~~~~~~c~~~----~~~i~~~~~~~~~--~~~~~~l~~l~~l~l~~~~l~--~l~~~~~~~l~~L~   72 (390)
T 3o6n_A            3 VKPR--QPEYKCIDSNLQYDCVFY----DVHIDMQTQDVYF--GFEDITLNNQKIVTFKNSTMR--KLPAALLDSFRQVE   72 (390)
T ss_dssp             ------CCEECBCC------EEEE----SCEECSSCCCCEE--SCSSGGGCCCSEEEEESCEES--EECTHHHHHCCCCS
T ss_pred             cCCC--CCccceehhhhhhcccee----eeeeecccccccc--cccccccCCceEEEecCCchh--hCChhHhcccccCc
Confidence            6789  66678876 444444211    1111111111111  222345788888888888877  4564 367788888


Q ss_pred             EEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHHhcCCC
Q 046844           96 YLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLP  175 (967)
Q Consensus        96 ~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~  175 (967)
                      +|++++|.+.+..|..++++++|++|++++|                                                 
T Consensus        73 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-------------------------------------------------  103 (390)
T 3o6n_A           73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-------------------------------------------------  103 (390)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSS-------------------------------------------------
T ss_pred             EEECCCCcccccChhhccCCCCcCEEECCCC-------------------------------------------------
Confidence            8888888887555556666666666666653                                                 


Q ss_pred             CccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEecc
Q 046844          176 NLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLS  255 (967)
Q Consensus       176 ~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  255 (967)
                                .+++..+..+.++++|++|++++|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus       104 ----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  173 (390)
T 3o6n_A          104 ----------AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  173 (390)
T ss_dssp             ----------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred             ----------CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence                      2222233333444444444444444433333334445555555555555554444445555555555555


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccC
Q 046844          256 INQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPI  335 (967)
Q Consensus       256 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  335 (967)
                      +|.+....   +..+++|+.|++++|.+.+     +...++|++|++++|.+.                        ...
T Consensus       174 ~n~l~~~~---~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~------------------------~~~  221 (390)
T 3o6n_A          174 SNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN------------------------VVR  221 (390)
T ss_dssp             SSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCC------------------------EEE
T ss_pred             CCcCCccc---cccccccceeecccccccc-----cCCCCcceEEECCCCeee------------------------ecc
Confidence            44432221   1123333444444333321     112233444444444433                        221


Q ss_pred             ccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCC
Q 046844          336 PSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSS  415 (967)
Q Consensus       336 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  415 (967)
                      .  ....+|++|++++|.+++.  .. +..+++|++|++++|.+++..|..+..+++|++|++++|++.+....  ...+
T Consensus       222 ~--~~~~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~l  294 (390)
T 3o6n_A          222 G--PVNVELTILKLQHNNLTDT--AW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY--GQPI  294 (390)
T ss_dssp             C--CCCSSCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS--SSCC
T ss_pred             c--cccccccEEECCCCCCccc--HH-HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc--cCCC
Confidence            1  1123555566666655532  12 56666677777777766666666666677777777777766643221  1345


Q ss_pred             CcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCC
Q 046844          416 SVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISG  487 (967)
Q Consensus       416 ~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~  487 (967)
                      ++|+.|++++|.+. .+|..+ ..+++|+.|++++|+++.+.           +..+++|++|++++|.+.+
T Consensus       295 ~~L~~L~L~~n~l~-~~~~~~-~~l~~L~~L~L~~N~i~~~~-----------~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          295 PTLKVLDLSHNHLL-HVERNQ-PQFDRLENLYLDHNSIVTLK-----------LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             TTCCEEECCSSCCC-CCGGGH-HHHTTCSEEECCSSCCCCCC-----------CCTTCCCSEEECCSSCEEH
T ss_pred             CCCCEEECCCCcce-ecCccc-cccCcCCEEECCCCccceeC-----------chhhccCCEEEcCCCCccc
Confidence            66666666666666 455554 66788888888888776442           4556677888888887764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=2e-30  Score=292.62  Aligned_cols=334  Identities=20%  Similarity=0.205  Sum_probs=203.3

Q ss_pred             CCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchh
Q 046844          415 SSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIW  494 (967)
Q Consensus       415 ~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~  494 (967)
                      ...++.+++++|.+. .+|..+|..+++|++|++++|+++.+...        .+..+++|++|++++|++++..|..+.
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~~~  114 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTY--------AFAYAHTIQKLYMGFNAIRYLPPHVFQ  114 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTT--------TTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChh--------hccCCCCcCEEECCCCCCCcCCHHHhc
Confidence            345666666666665 67777778889999999999888754321        177788888888888888876666554


Q ss_pred             ccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeee
Q 046844          495 EVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFV  574 (967)
Q Consensus       495 ~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~  574 (967)
                      ..  ++|++|++++|.++.++.                                           .++..++.++.  |+
T Consensus       115 ~l--~~L~~L~L~~n~l~~l~~-------------------------------------------~~~~~l~~L~~--L~  147 (390)
T 3o6n_A          115 NV--PLLTVLVLERNDLSSLPR-------------------------------------------GIFHNTPKLTT--LS  147 (390)
T ss_dssp             TC--TTCCEEECCSSCCCCCCT-------------------------------------------TTTTTCTTCCE--EE
T ss_pred             CC--CCCCEEECCCCccCcCCH-------------------------------------------HHhcCCCCCcE--EE
Confidence            32  234444444433333322                                           11111122222  33


Q ss_pred             ecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCc
Q 046844          575 AANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ  654 (967)
Q Consensus       575 l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~  654 (967)
                      +++|.+.+..|..+..+++|++|++++|++++ ++  +....  +|+.|++++|.+++ +     ....+|++|++++|+
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l~--~L~~L~l~~n~l~~-~-----~~~~~L~~L~l~~n~  216 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIP--SLFHANVSYNLLST-L-----AIPIAVEELDASHNS  216 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GGGCT--TCSEEECCSSCCSE-E-----ECCSSCSEEECCSSC
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--ccccc--ccceeecccccccc-c-----CCCCcceEEECCCCe
Confidence            34444444445556667777777777777764 22  22223  67777777777763 2     223467777777777


Q ss_pred             cCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCc
Q 046844          655 LQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLS  734 (967)
Q Consensus       655 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p  734 (967)
                      ++.. |..  ..++|+.|++++|++++.  .++..+++|++|++++|++++..  |..+..+++|+.|++++|+++    
T Consensus       217 l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~----  285 (390)
T 3o6n_A          217 INVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNRLV----  285 (390)
T ss_dssp             CCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECCSSCCC----
T ss_pred             eeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC--hhHccccccCCEEECCCCcCc----
Confidence            7644 222  235677777777777663  45667777777777777776665  555666666666666655543    


Q ss_pred             HHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEE
Q 046844          735 QKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYAL  814 (967)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L  814 (967)
                                                                                      + +|..++.+++|++|
T Consensus       286 ----------------------------------------------------------------~-~~~~~~~l~~L~~L  300 (390)
T 3o6n_A          286 ----------------------------------------------------------------A-LNLYGQPIPTLKVL  300 (390)
T ss_dssp             ----------------------------------------------------------------E-EECSSSCCTTCCEE
T ss_pred             ----------------------------------------------------------------c-cCcccCCCCCCCEE
Confidence                                                                            2 23444556677777


Q ss_pred             ECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCCCcCCccCCCccCCCCCCC
Q 046844          815 NMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLY  894 (967)
Q Consensus       815 ~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc  894 (967)
                      +|++|+++ .+|..++.+++|+.|||++|++++. |  +..++.|+.|++++|++++.-.. ..+..+....+.+++..|
T Consensus       301 ~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c  375 (390)
T 3o6n_A          301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHC  375 (390)
T ss_dssp             ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCC
T ss_pred             ECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCcee
Confidence            77777777 4666677777777777777777654 2  56677777777777777664221 123344445566676667


Q ss_pred             CC
Q 046844          895 GP  896 (967)
Q Consensus       895 g~  896 (967)
                      ..
T Consensus       376 ~~  377 (390)
T 3o6n_A          376 KI  377 (390)
T ss_dssp             CT
T ss_pred             cc
Confidence            64

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.4e-30  Score=310.03  Aligned_cols=334  Identities=19%  Similarity=0.191  Sum_probs=204.0

Q ss_pred             CcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhc
Q 046844          416 SVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWE  495 (967)
Q Consensus       416 ~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~  495 (967)
                      ..++.+++++|.+. .+|..+|..+++|+.|++++|.++.+...        .+..+++|++|++++|.+++..|..+..
T Consensus        51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~~~~  121 (597)
T 3oja_B           51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTY--------AFAYAHTIQKLYMGFNAIRYLPPHVFQN  121 (597)
T ss_dssp             CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTT--------TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChH--------HhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence            44555666666655 57777778888888888888887744321        2677788888888888887766655443


Q ss_pred             cCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeee
Q 046844          496 VGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVA  575 (967)
Q Consensus       496 ~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l  575 (967)
                      .                        ++|++|++++|.+++.++                     .++..++.++.  |++
T Consensus       122 l------------------------~~L~~L~L~~n~l~~l~~---------------------~~~~~l~~L~~--L~L  154 (597)
T 3oja_B          122 V------------------------PLLTVLVLERNDLSSLPR---------------------GIFHNTPKLTT--LSM  154 (597)
T ss_dssp             C------------------------TTCCEEECCSSCCCCCCT---------------------TTTTTCTTCCE--EEC
T ss_pred             C------------------------CCCCEEEeeCCCCCCCCH---------------------HHhccCCCCCE--EEe
Confidence            2                        234444444444332222                     11111222222  444


Q ss_pred             cCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCcc
Q 046844          576 ANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQL  655 (967)
Q Consensus       576 ~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l  655 (967)
                      ++|.+++..|..+..+++|++|++++|.+++. +  +....  +|+.|++++|.+++      +....+|+.|++++|.+
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~--~L~~L~l~~n~l~~------l~~~~~L~~L~ls~n~l  223 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIP--SLFHANVSYNLLST------LAIPIAVEELDASHNSI  223 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCT--TCSEEECCSSCCSE------EECCTTCSEEECCSSCC
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhh--hhhhhhcccCcccc------ccCCchhheeeccCCcc
Confidence            44444444555566666677777777766642 2  12222  66666666666653      22234566666666666


Q ss_pred             CCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcH
Q 046844          656 QGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQ  735 (967)
Q Consensus       656 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~  735 (967)
                      +...+..   .++|+.|++++|.+++  +.++..+++|+.|+|++|.+++..  |..+..+++|+.|+|+          
T Consensus       224 ~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls----------  286 (597)
T 3oja_B          224 NVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYIS----------  286 (597)
T ss_dssp             CEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECT----------
T ss_pred             ccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCC--HHHhcCccCCCEEECC----------
Confidence            5332221   2456666666666665  245566666666666666666554  5555555555544444          


Q ss_pred             HHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEE
Q 046844          736 KWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALN  815 (967)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~  815 (967)
                                                                                +|++++ +|..++.+++|+.|+
T Consensus       287 ----------------------------------------------------------~N~l~~-l~~~~~~l~~L~~L~  307 (597)
T 3oja_B          287 ----------------------------------------------------------NNRLVA-LNLYGQPIPTLKVLD  307 (597)
T ss_dssp             ----------------------------------------------------------TSCCCE-EECSSSCCTTCCEEE
T ss_pred             ----------------------------------------------------------CCCCCC-CCcccccCCCCcEEE
Confidence                                                                      444443 355566677888888


Q ss_pred             CCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCCCcCCccCCCccCCCCCCCC
Q 046844          816 MSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYG  895 (967)
Q Consensus       816 Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg  895 (967)
                      |++|.++ .+|..++.+++|+.|||++|.+++..   +..++.|+.|++++|+++|..+. ..+..+....+.+++..|+
T Consensus       308 Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~  382 (597)
T 3oja_B          308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCK  382 (597)
T ss_dssp             CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCC
T ss_pred             CCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCC
Confidence            8888888 57777888888888888888887652   66778888888888888876432 2345566667788888998


Q ss_pred             CC
Q 046844          896 PP  897 (967)
Q Consensus       896 ~~  897 (967)
                      .+
T Consensus       383 ~~  384 (597)
T 3oja_B          383 ID  384 (597)
T ss_dssp             TT
T ss_pred             cc
Confidence            64

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=3.4e-30  Score=286.01  Aligned_cols=306  Identities=21%  Similarity=0.296  Sum_probs=201.4

Q ss_pred             ccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCC
Q 046844          438 FELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEP  517 (967)
Q Consensus       438 ~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~  517 (967)
                      ..+++|++|++++|.+..+          +.+..+++|++|++++|++++..+  +.  ..++|++|++++|.++.++..
T Consensus        41 ~~l~~L~~L~l~~~~i~~~----------~~~~~~~~L~~L~l~~n~i~~~~~--~~--~l~~L~~L~L~~n~i~~~~~~  106 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASI----------QGIEYLTNLEYLNLNGNQITDISP--LS--NLVKLTNLYIGTNKITDISAL  106 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCC----------TTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGGG
T ss_pred             hhcccccEEEEeCCccccc----------hhhhhcCCccEEEccCCccccchh--hh--cCCcCCEEEccCCcccCchHH
Confidence            3455666666666655422          224555566666666666653322  22  223455555555555554433


Q ss_pred             CCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEE
Q 046844          518 YSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVL  597 (967)
Q Consensus       518 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L  597 (967)
                      ..+++|++|++++|++++                     ++.                            +..+++|+.|
T Consensus       107 ~~l~~L~~L~l~~n~i~~---------------------~~~----------------------------~~~l~~L~~L  137 (347)
T 4fmz_A          107 QNLTNLRELYLNEDNISD---------------------ISP----------------------------LANLTKMYSL  137 (347)
T ss_dssp             TTCTTCSEEECTTSCCCC---------------------CGG----------------------------GTTCTTCCEE
T ss_pred             cCCCcCCEEECcCCcccC---------------------chh----------------------------hccCCceeEE
Confidence            344555555555554432                     111                            3445667777


Q ss_pred             EcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCC
Q 046844          598 DLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSN  677 (967)
Q Consensus       598 ~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  677 (967)
                      ++++|.....++. +....  +|++|++++|.+.+ ++.  +..+++|++|++++|++++..+  +..+++|+.|++++|
T Consensus       138 ~l~~n~~~~~~~~-~~~l~--~L~~L~l~~~~~~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  209 (347)
T 4fmz_A          138 NLGANHNLSDLSP-LSNMT--GLNYLTVTESKVKD-VTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN  209 (347)
T ss_dssp             ECTTCTTCCCCGG-GTTCT--TCCEEECCSSCCCC-CGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             ECCCCCCcccccc-hhhCC--CCcEEEecCCCcCC-chh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccC
Confidence            7777754433333 44443  67777777777663 322  5566777777777777775433  677778888888888


Q ss_pred             ccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccc
Q 046844          678 YISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGI  757 (967)
Q Consensus       678 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~  757 (967)
                      .+++..+  +..+++|++|++++|++++..  +  +..+++|+.|++++|++++. +.                      
T Consensus       210 ~l~~~~~--~~~~~~L~~L~l~~n~l~~~~--~--~~~l~~L~~L~l~~n~l~~~-~~----------------------  260 (347)
T 4fmz_A          210 QITDITP--VANMTRLNSLKIGNNKITDLS--P--LANLSQLTWLEIGTNQISDI-NA----------------------  260 (347)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCCG--G--GTTCTTCCEEECCSSCCCCC-GG----------------------
T ss_pred             CCCCCch--hhcCCcCCEEEccCCccCCCc--c--hhcCCCCCEEECCCCccCCC-hh----------------------
Confidence            7777555  677778888888888777653  2  67777888888888877642 20                      


Q ss_pred             cCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCe
Q 046844          758 EMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIES  837 (967)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~  837 (967)
                                             ...++.|+.|++++|++++.  +.++.+++|+.|+|++|++++..|..++.+++|+.
T Consensus       261 -----------------------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          261 -----------------------VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             -----------------------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             -----------------------HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence                                   11456788888888888864  35888999999999999999999999999999999


Q ss_pred             EeCcCccccccCCccccCCCCCCeEEccCCccc
Q 046844          838 LDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV  870 (967)
Q Consensus       838 LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~  870 (967)
                      |++++|.+++..|  ++.++.|++|++++|.++
T Consensus       316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEccCCccccccC--hhhhhccceeehhhhccc
Confidence            9999999998777  888999999999999874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=2.8e-29  Score=278.65  Aligned_cols=306  Identities=24%  Similarity=0.306  Sum_probs=166.4

Q ss_pred             CcCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHH
Q 046844           63 LFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSL  142 (967)
Q Consensus        63 l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~  142 (967)
                      +..+++|++|+++++.+.  .+| .+..+++|++|++++|.+. .+|. +.++++|++|++++|....         ++ 
T Consensus        40 ~~~l~~L~~L~l~~~~i~--~~~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~---------~~-  104 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA--SIQ-GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD---------IS-  104 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC--CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC---------CG-
T ss_pred             chhcccccEEEEeCCccc--cch-hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC---------ch-
Confidence            345666677777766665  234 3666677777777776666 3444 6666666666666642211         11 


Q ss_pred             HhcCCCCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCC
Q 046844          143 FLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHL  222 (967)
Q Consensus       143 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l  222 (967)
                      .+.++++|++|+++++.+...+     .+..+++|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+
T Consensus       105 ~~~~l~~L~~L~l~~n~i~~~~-----~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l  176 (347)
T 4fmz_A          105 ALQNLTNLRELYLNEDNISDIS-----PLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANL  176 (347)
T ss_dssp             GGTTCTTCSEEECTTSCCCCCG-----GGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred             HHcCCCcCCEEECcCCcccCch-----hhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccC
Confidence            2455555666666555554432     15556666666666664443332 25566666666666666554433  5566


Q ss_pred             CCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEc
Q 046844          223 TNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEV  302 (967)
Q Consensus       223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  302 (967)
                      ++|++|++++|.+.+..+  +..+++|+.|++++|.+....  .+..+++|++|++++|.+++..+  +..+++|++|++
T Consensus       177 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  250 (347)
T 4fmz_A          177 TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEI  250 (347)
T ss_dssp             TTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             CCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCc--hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEEC
Confidence            666666666666653322  555666666666666543322  14445556666666665553322  555666666666


Q ss_pred             cCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCC
Q 046844          303 SSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGS  382 (967)
Q Consensus       303 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  382 (967)
                      ++|.+++.  ..+..+++|++|++++|.+.+. +.+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++.
T Consensus       251 ~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          251 GTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHH-HHTCTTCSEEECCSSSCCCC
T ss_pred             CCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhH-hhccccCCEEEccCCccccc
Confidence            66655532  3455555666666665555542 33333445555555555555433333 45555555555555555544


Q ss_pred             cChhccCCCCCCEEeCcCCcC
Q 046844          383 IPRSLFLLPNLEMLQLSNNQF  403 (967)
Q Consensus       383 ~~~~l~~l~~L~~L~L~~n~l  403 (967)
                      .|  +..+++|++|++++|.+
T Consensus       327 ~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          327 RP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             GG--GGGCTTCSEESSSCC--
T ss_pred             cC--hhhhhccceeehhhhcc
Confidence            33  44555555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=9.8e-30  Score=302.86  Aligned_cols=347  Identities=20%  Similarity=0.170  Sum_probs=195.0

Q ss_pred             CcCCCCCCCCCCCcc----cceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCc-cccCC
Q 046844           17 KLSQWSSHQSSDCCD----WSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPS-RLGNL   91 (967)
Q Consensus        17 ~l~~w~~~~~~~~c~----w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~-~l~~l   91 (967)
                      .+++|  ..+.+||.    |.++.|+.  ++   +........    ...-..+.+++.|+++++.+.  .+|. .+..+
T Consensus         8 ~l~~~--~~~~~C~~~~~~~~c~~~~~--~i---~~~~~~~~~----~~~~l~l~~l~~l~l~~~~l~--~lp~~~~~~l   74 (597)
T 3oja_B            8 NVKPR--QPEYKCIDSNLQYDCVFYDV--HI---DMQTQDVYF----GFEDITLNNQKIVTFKNSTMR--KLPAALLDSF   74 (597)
T ss_dssp             ---CC--CSEECCCCC--CCSEEECSC--EE---CSSCCCCEE----SCSSGGGCCCSEEEESSCEES--EECTHHHHHC
T ss_pred             cccCC--CCCCcCcccCcCceeEecCc--ee---ccccccccc----CcccccCCCceEEEeeCCCCC--CcCHHHHccC
Confidence            57899  66778885    77776652  11   111111111    112235678888888888877  3554 46778


Q ss_pred             CCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHHh
Q 046844           92 TNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKAL  171 (967)
Q Consensus        92 ~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l  171 (967)
                      ++|++|+|++|.+.+..|..++.+++|++|++++|                                             
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n---------------------------------------------  109 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN---------------------------------------------  109 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS---------------------------------------------
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC---------------------------------------------
Confidence            88888888888888666666777777777777654                                             


Q ss_pred             cCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCE
Q 046844          172 SFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLET  251 (967)
Q Consensus       172 ~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  251 (967)
                                    .+++..+..++.+++|++|+|++|.+.+..+..|+++++|++|++++|.+++..|..|..+++|++
T Consensus       110 --------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  175 (597)
T 3oja_B          110 --------------AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN  175 (597)
T ss_dssp             --------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             --------------cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcE
Confidence                          223333333444444444444444444333333445555555555555555444445555555555


Q ss_pred             EeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccc
Q 046844          252 LDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHF  331 (967)
Q Consensus       252 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  331 (967)
                      |++++|.+....   +..+++|+.|++++|.+.+     +...++|++|++++|.+.                       
T Consensus       176 L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~-----------------------  224 (597)
T 3oja_B          176 LQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-----------------------  224 (597)
T ss_dssp             EECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCC-----------------------
T ss_pred             EECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccc-----------------------
Confidence            555555432221   1123333444444333321     122233444444444433                       


Q ss_pred             cccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCcccccccc
Q 046844          332 FGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIS  411 (967)
Q Consensus       332 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  411 (967)
                       ...+..  ..+|+.|++++|.+++.  .. +..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+....  
T Consensus       225 -~~~~~~--~~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~--  296 (597)
T 3oja_B          225 -VVRGPV--NVELTILKLQHNNLTDT--AW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY--  296 (597)
T ss_dssp             -EEECSC--CSCCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS--
T ss_pred             -cccccc--CCCCCEEECCCCCCCCC--hh-hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc--
Confidence             221111  13566666666666542  22 56677777777777777766677777777777777777777653221  


Q ss_pred             ccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCC
Q 046844          412 NVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISG  487 (967)
Q Consensus       412 ~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~  487 (967)
                      ...+++|+.|++++|.+. .+|..+ ..+++|+.|++++|.++.+.           +..+++|+.|++++|.+.+
T Consensus       297 ~~~l~~L~~L~Ls~N~l~-~i~~~~-~~l~~L~~L~L~~N~l~~~~-----------~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          297 GQPIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENLYLDHNSIVTLK-----------LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             SSCCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEEECCSSCCCCCC-----------CCTTCCCSEEECCSSCEEH
T ss_pred             cccCCCCcEEECCCCCCC-ccCccc-ccCCCCCEEECCCCCCCCcC-----------hhhcCCCCEEEeeCCCCCC
Confidence            134566777777777766 566655 77788888888888876442           4556778888888887764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.9e-29  Score=276.30  Aligned_cols=287  Identities=18%  Similarity=0.259  Sum_probs=171.9

Q ss_pred             CccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEccc
Q 046844          522 GIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSN  601 (967)
Q Consensus       522 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~  601 (967)
                      .++.++++++.++..+....+++++|++++|.++.+++.....+..++.  |++++|.+++..|..+..+++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~--L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYA--LVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCE--EECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcE--EECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            3455555555554333333345555555555555544433333444444  66666666666666666677777777777


Q ss_pred             CcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccC--CCCcccccCCCCCCEEECCCCcc
Q 046844          602 NNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQ--GVVPKSLANCNMLQVLDLRSNYI  679 (967)
Q Consensus       602 N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l  679 (967)
                      |+++ .+|..+.  .  +|++|++++|+++ .+|...|..+++|++|++++|.++  +..|..|..+ +|+.|++++|++
T Consensus       112 n~l~-~l~~~~~--~--~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          112 NHLV-EIPPNLP--S--SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             SCCC-SCCSSCC--T--TCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CcCC-ccCcccc--c--cCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            7766 5555443  2  6777777777776 444444666677777777777764  3556666666 677777777776


Q ss_pred             ccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccC
Q 046844          680 SDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEM  759 (967)
Q Consensus       680 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  759 (967)
                      ++ +|..+.  ++|++|++++|++++..  +..+..+++|+.|++++|++++..|..+                      
T Consensus       185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~----------------------  237 (332)
T 2ft3_A          185 TG-IPKDLP--ETLNELHLDHNKIQAIE--LEDLLRYSKLYRLGLGHNQIRMIENGSL----------------------  237 (332)
T ss_dssp             SS-CCSSSC--SSCSCCBCCSSCCCCCC--TTSSTTCTTCSCCBCCSSCCCCCCTTGG----------------------
T ss_pred             Cc-cCcccc--CCCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCCcCChhHh----------------------
Confidence            66 333332  56677777777776654  5566666777777777776665443211                      


Q ss_pred             CCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCC------C
Q 046844          760 PSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNL------K  833 (967)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l------~  833 (967)
                                            ..++.|+.|++++|+++ .+|..++.+++|+.|+|++|++++..+..|..+      .
T Consensus       238 ----------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  294 (332)
T 2ft3_A          238 ----------------------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA  294 (332)
T ss_dssp             ----------------------GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred             ----------------------hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence                                  13455666677777666 566666666777777777777766555555543      4


Q ss_pred             CCCeEeCcCcccc--ccCCccccCCCCCCeEEccCC
Q 046844          834 EIESLDLSMNNLS--GKIPAQLASLNFLSVLNLSYN  867 (967)
Q Consensus       834 ~L~~LdLs~N~l~--g~ip~~l~~l~~L~~l~ls~N  867 (967)
                      .|+.|++++|.+.  +..|..+..++.|+.+++++|
T Consensus       295 ~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             cccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            5666777777665  455566666666776766665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=8.6e-29  Score=272.37  Aligned_cols=230  Identities=21%  Similarity=0.228  Sum_probs=127.7

Q ss_pred             ChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCccccc
Q 046844          585 PESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLA  664 (967)
Q Consensus       585 p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  664 (967)
                      +..+.++++|++|++++|++++..|..+..+.  +|++|++++|+++ .+|...+   ++|++|++++|++++..+..|.
T Consensus        69 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~  142 (330)
T 1xku_A           69 DGDFKNLKNLHTLILINNKISKISPGAFAPLV--KLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFN  142 (330)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT--TCCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHT
T ss_pred             hhhhccCCCCCEEECCCCcCCeeCHHHhcCCC--CCCEEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhc
Confidence            33444555566666666665544455554443  5666666666655 4554422   4566666666666655555556


Q ss_pred             CCCCCCEEECCCCcccc--ccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHh
Q 046844          665 NCNMLQVLDLRSNYISD--NFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMM  742 (967)
Q Consensus       665 ~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~  742 (967)
                      ++++|++|++++|+++.  ..+..+.++++|++|++++|++++.   |..+.  ++|+.|++++|++++..|..+     
T Consensus       143 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l---~~~~~--~~L~~L~l~~n~l~~~~~~~~-----  212 (330)
T 1xku_A          143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI---PQGLP--PSLTELHLDGNKITKVDAASL-----  212 (330)
T ss_dssp             TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC---CSSCC--TTCSEEECTTSCCCEECTGGG-----
T ss_pred             CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC---Ccccc--ccCCEEECCCCcCCccCHHHh-----
Confidence            66666666666666542  4455555666666666666665542   33332  556666666666554433211     


Q ss_pred             hcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCc
Q 046844          743 VAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALT  822 (967)
Q Consensus       743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~  822 (967)
                                                             ..++.|+.|++++|++++..|..++.+++|+.|+|++|+++
T Consensus       213 ---------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          213 ---------------------------------------KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             ---------------------------------------TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             ---------------------------------------cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence                                                   12445556666666666555555666666666666666666


Q ss_pred             ccCCccccCCCCCCeEeCcCccccccCCccccCC------CCCCeEEccCCccc
Q 046844          823 GSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASL------NFLSVLNLSYNNLV  870 (967)
Q Consensus       823 g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l------~~L~~l~ls~N~l~  870 (967)
                       .+|..++.+++|+.||+++|++++..+..+...      +.|+.+++++|.+.
T Consensus       254 -~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             -SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             -cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence             556566666666666666666665555444332      45556666666553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=4.8e-28  Score=266.39  Aligned_cols=289  Identities=17%  Similarity=0.234  Sum_probs=223.9

Q ss_pred             CccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEccc
Q 046844          522 GIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSN  601 (967)
Q Consensus       522 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~  601 (967)
                      .++.++++++.++..+....+.+++|++++|+++.++......+..++.  |++++|.+++..|..+..+++|++|++++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~--L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT--LILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCE--EECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCE--EECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            6888999988888665555678888888888888887755555666666  88888888888888888888888999988


Q ss_pred             CcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCC--CCcccccCCCCCCEEECCCCcc
Q 046844          602 NNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQG--VVPKSLANCNMLQVLDLRSNYI  679 (967)
Q Consensus       602 N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l  679 (967)
                      |+++ .+|..+.  .  +|++|++++|.+++ ++...|..+++|++|++++|.++.  ..+..|..+++|++|++++|++
T Consensus       110 n~l~-~l~~~~~--~--~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          110 NQLK-ELPEKMP--K--TLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             SCCS-BCCSSCC--T--TCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CcCC-ccChhhc--c--cccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            8887 6676553  2  88888898888884 444447888888889998888863  6777888888889999988888


Q ss_pred             ccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccC
Q 046844          680 SDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEM  759 (967)
Q Consensus       680 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  759 (967)
                      +. +|..+.  ++|++|++++|++++..  |..+..+++|+.|++++|++++..+..+                      
T Consensus       184 ~~-l~~~~~--~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----------------------  236 (330)
T 1xku_A          184 TT-IPQGLP--PSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNGSL----------------------  236 (330)
T ss_dssp             CS-CCSSCC--TTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTTTG----------------------
T ss_pred             cc-CCcccc--ccCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCceeChhhc----------------------
Confidence            86 444332  78888889888888876  7788888888889998888876544211                      


Q ss_pred             CCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCC------C
Q 046844          760 PSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNL------K  833 (967)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l------~  833 (967)
                                            ..++.|+.|++++|+++ .+|..++.++.|++|+|++|++++..+..|...      .
T Consensus       237 ----------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~  293 (330)
T 1xku_A          237 ----------------------ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA  293 (330)
T ss_dssp             ----------------------GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred             ----------------------cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence                                  13567888888888888 778888888888889999888887777776543      6


Q ss_pred             CCCeEeCcCccccc--cCCccccCCCCCCeEEccCCc
Q 046844          834 EIESLDLSMNNLSG--KIPAQLASLNFLSVLNLSYNN  868 (967)
Q Consensus       834 ~L~~LdLs~N~l~g--~ip~~l~~l~~L~~l~ls~N~  868 (967)
                      .++.|++++|.+..  ..|..+..+..++.+++++|+
T Consensus       294 ~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cccceEeecCcccccccCccccccccceeEEEecccC
Confidence            78888888888863  556778888888888888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.7e-28  Score=268.51  Aligned_cols=267  Identities=16%  Similarity=0.229  Sum_probs=219.8

Q ss_pred             CCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCcc
Q 046844          542 PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLE  621 (967)
Q Consensus       542 ~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~  621 (967)
                      ..++.++++++.++.+|..+.   +.++.  |++++|.+.+..|..+.++++|++|++++|++++..|..+..+.  +|+
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~---~~l~~--L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~  105 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEIS---PDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR--KLQ  105 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCC---TTCCE--EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT--TCC
T ss_pred             ccCCEEECCCCCccccCCCCC---CCCeE--EECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC--CCC
Confidence            368899999999999998664   34555  89999999988888899999999999999999877777777766  899


Q ss_pred             EEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCcccc--ccchhhhcCCCCCEEEcc
Q 046844          622 VLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISD--NFPCWLRNASSLQVLVLR  699 (967)
Q Consensus       622 ~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~  699 (967)
                      +|++++|+++ .+|...+   ++|++|++++|++++..+..|..+++|+.|++++|+++.  ..|..+..+ +|+.|+++
T Consensus       106 ~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~  180 (332)
T 2ft3_A          106 KLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS  180 (332)
T ss_dssp             EEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred             EEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence            9999999998 7887644   689999999999998777788999999999999999863  677778777 89999999


Q ss_pred             CCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceee
Q 046844          700 SNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIK  779 (967)
Q Consensus       700 ~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  779 (967)
                      +|++++.   |..+.  ++|+.|++++|++++..|..+                                          
T Consensus       181 ~n~l~~l---~~~~~--~~L~~L~l~~n~i~~~~~~~l------------------------------------------  213 (332)
T 2ft3_A          181 EAKLTGI---PKDLP--ETLNELHLDHNKIQAIELEDL------------------------------------------  213 (332)
T ss_dssp             SSBCSSC---CSSSC--SSCSCCBCCSSCCCCCCTTSS------------------------------------------
T ss_pred             CCCCCcc---Ccccc--CCCCEEECCCCcCCccCHHHh------------------------------------------
Confidence            9998874   55443  788899999998876554221                                          


Q ss_pred             ecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCC---
Q 046844          780 LLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASL---  856 (967)
Q Consensus       780 ~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l---  856 (967)
                        ..++.|+.|++++|++++..|..++.+++|+.|+|++|+++ .+|..++.+++|+.||+++|++++..+..+...   
T Consensus       214 --~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~  290 (332)
T 2ft3_A          214 --LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG  290 (332)
T ss_dssp             --TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred             --cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccc
Confidence              14567888899999998888888888999999999999988 788888889999999999999988777777653   


Q ss_pred             ---CCCCeEEccCCccc
Q 046844          857 ---NFLSVLNLSYNNLV  870 (967)
Q Consensus       857 ---~~L~~l~ls~N~l~  870 (967)
                         ..|+.+++++|.+.
T Consensus       291 ~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          291 VKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             SSSCCBSEEECCSSSSC
T ss_pred             cccccccceEeecCccc
Confidence               56888899988876

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=2.6e-31  Score=307.42  Aligned_cols=63  Identities=25%  Similarity=0.373  Sum_probs=45.0

Q ss_pred             cccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCC----CcChhccCCCCCCEEeCcCCcCcc
Q 046844          343 NLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG----SIPRSLFLLPNLEMLQLSNNQFEN  405 (967)
Q Consensus       343 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~  405 (967)
                      +|++|++++|+++.......+..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~   70 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD   70 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence            567777777777644434446778888888888888774    245567777888888888887764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=2.1e-30  Score=299.80  Aligned_cols=357  Identities=24%  Similarity=0.228  Sum_probs=222.2

Q ss_pred             cEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCC---CCCccccCCCCCCEEeCCCCCCCccCChhcc-CCC-
Q 046844           42 HVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGF---QIPSRLGNLTNLTYLNLSQGGFAGEIPTEIS-SLT-  116 (967)
Q Consensus        42 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~---~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~-~l~-  116 (967)
                      ++++|+|+++.+.... ....+..+++|++|+|++|.+.+.   .++..+..+++|++|+|++|.+.+..+..+. .++ 
T Consensus         4 ~l~~L~Ls~~~l~~~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            4 DIQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEESCCCCHHH-HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             cceehhhhhcccCchh-HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            6788899888876432 012256788899999998888743   2566778888999999999888765554443 355 


Q ss_pred             ---CCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhH-HHHh-cCCCCccEEEccCCCCCCCC
Q 046844          117 ---RLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEW-CKAL-SFLPNLQVLSLSGCDLSGPI  191 (967)
Q Consensus       117 ---~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~-~~~l-~~l~~L~~L~Ls~~~l~~~~  191 (967)
                         +|++|++++|....    .....++..+.++++|++|++++|.+...+... ...+ ...++|++|++++|.+++..
T Consensus        83 ~~~~L~~L~L~~n~i~~----~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  158 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTG----AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS  158 (461)
T ss_dssp             TTCCCCEEECTTSCCBG----GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             CCCceeEEEccCCCCCH----HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence               68999998864322    222456777888888999999888876543322 2222 33678888888888887643


Q ss_pred             ----cccccCCCCCCEEEccCCCCCCcchhhhc-----CCCCCCEEeccCCCCCCc----cchhccCCCCCCEEeccCCC
Q 046844          192 ----NHYLAKSRSLSVIRLHYNYGLSSGTEFLA-----HLTNLKALDLSECGLQGK----FPEKILHVPTLETLDLSINQ  258 (967)
Q Consensus       192 ----~~~l~~l~~L~~L~L~~n~~~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~  258 (967)
                          +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.
T Consensus       159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence                45566778888888888887665554443     356888888888888764    46667777888888888887


Q ss_pred             CCCCCCC-----CCCCCCCCCEEEccCCCCCCC----ccccccCCCCCCEEEccCCCCCCCCCcccc-----CCCCCcEE
Q 046844          259 LLQGSLP-----NFPKNSSLRDLILSHTGLSGT----LPDSIGNLENLTRVEVSSCNFTGPIPPSMA-----NLTQLFHM  324 (967)
Q Consensus       259 ~~~~~~~-----~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L  324 (967)
                      +......     .+..+++|++|++++|.++..    ++..+..+++|++|++++|.+++..+..+.     ..++|++|
T Consensus       239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  318 (461)
T 1z7x_W          239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  318 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence            5443211     122356677777777766643    455555667777777777766532222222     12466666


Q ss_pred             EccCccccccC----cc-ccccCcccEEECCCCCCCCCCChhhhhc-----ccCccEEEcCCCcCCC----CcChhccCC
Q 046844          325 DFSSNHFFGPI----PS-LHKSRNLNNLDLSFNNLSGGISSTFWEQ-----LLNLQIVVLGHNSLSG----SIPRSLFLL  390 (967)
Q Consensus       325 ~L~~n~l~~~~----~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~l~~l  390 (967)
                      ++++|.+++..    +. +..+++|++|++++|.+.+..+.. +..     .++|++|++++|.+++    .++..+..+
T Consensus       319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  397 (461)
T 1z7x_W          319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE-LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN  397 (461)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH-HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred             EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH-HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence            66666655431    11 112345555555555554332222 111     3455555555555553    344445555


Q ss_pred             CCCCEEeCcCCcCc
Q 046844          391 PNLEMLQLSNNQFE  404 (967)
Q Consensus       391 ~~L~~L~L~~n~l~  404 (967)
                      ++|++|++++|++.
T Consensus       398 ~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          398 HSLRELDLSNNCLG  411 (461)
T ss_dssp             CCCCEEECCSSSCC
T ss_pred             CCccEEECCCCCCC
Confidence            55555555555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.2e-30  Score=312.00  Aligned_cols=437  Identities=14%  Similarity=0.079  Sum_probs=220.0

Q ss_pred             CCcccceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCC---CCCCCcccc------------CCC
Q 046844           28 DCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFK---GFQIPSRLG------------NLT   92 (967)
Q Consensus        28 ~~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~---~~~lp~~l~------------~l~   92 (967)
                      -|++|.++.+....++   .+... .....  +..+.++++|++|+|+++...   + .+|..++            .++
T Consensus        40 vck~W~~~~~~~~~~l---~~~~~-~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~  112 (592)
T 3ogk_B           40 VCRRWFKIDSETREHV---TMALC-YTATP--DRLSRRFPNLRSLKLKGKPRAAMFN-LIPENWGGYVTPWVTEISNNLR  112 (592)
T ss_dssp             SCHHHHHHHHHHCCEE---EESCG-GGSCH--HHHHHHCTTCSEEEEECSCGGGGGT-CSCTTSCCBCHHHHHHHHHHCT
T ss_pred             HhHHHHHhhhccccEE---EEeec-cccCh--HHHHHhCCCCeEEEecCCcchhhcc-cccccccccchHHHHHHHhhCC
Confidence            4568999865322222   22221 11111  234568899999999875321   1 1332222            788


Q ss_pred             CCCEEeCCCCCCCccCChhccC-CC-CCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHH
Q 046844           93 NLTYLNLSQGGFAGEIPTEISS-LT-RLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKA  170 (967)
Q Consensus        93 ~L~~L~Ls~~~~~~~lp~~l~~-l~-~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~  170 (967)
                      +|++|+|++|.+.+..+..++. ++ +|++|++++|..+.      ...++....++++|++|++++|.+.+.+..|...
T Consensus       113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~------~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~  186 (592)
T 3ogk_B          113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT------TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE  186 (592)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE------HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred             CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC------HHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence            9999999998888776766766 34 49999998874322      2345555667888888888888776665554433


Q ss_pred             -hcCCCCccEEEccCCCCCCC----CcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCC---Cccchh
Q 046844          171 -LSFLPNLQVLSLSGCDLSGP----INHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQ---GKFPEK  242 (967)
Q Consensus       171 -l~~l~~L~~L~Ls~~~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~~~~  242 (967)
                       ...+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+ ++..+..+++|++|+++.+...   ...+..
T Consensus       187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred             HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence             35677888888887777632    23334456666666666665544 4455566666666666543221   122233


Q ss_pred             ccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCC-ccccCCCCC
Q 046844          243 ILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIP-PSMANLTQL  321 (967)
Q Consensus       243 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L  321 (967)
                      +..+++|+.|+++++                        .. ..+|..+..+++|++|++++|.+++... ..+..+++|
T Consensus       266 l~~~~~L~~L~l~~~------------------------~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYM------------------------GP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL  320 (592)
T ss_dssp             CCCCTTCCEEEETTC------------------------CT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred             hhccccccccCcccc------------------------ch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence            444455555554443                        21 2344444445555555555554332211 123445555


Q ss_pred             cEEEccCccccccCccc-cccCcccEEECCC-----------CCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccC
Q 046844          322 FHMDFSSNHFFGPIPSL-HKSRNLNNLDLSF-----------NNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL  389 (967)
Q Consensus       322 ~~L~L~~n~l~~~~~~~-~~~~~L~~L~L~~-----------n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  389 (967)
                      ++|+++++...+.++.. ..+++|++|++++           +.+++.........+++|++|+++.+.+++..+..+..
T Consensus       321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~  400 (592)
T 3ogk_B          321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT  400 (592)
T ss_dssp             CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred             CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence            55555422111111211 1223455555552           23332211121234555555555555555444444433


Q ss_pred             -CCCCCEEeCc----CCcCccc-----cccccccCCCcccEEEeeCCc--CCCCCChhhhccCCCCCEEECCCCcccccc
Q 046844          390 -LPNLEMLQLS----NNQFENQ-----LPEISNVSSSVLFDLDLSGNR--LEGPVPISIFFELRNLYTLDLSSNKFSRLK  457 (967)
Q Consensus       390 -l~~L~~L~L~----~n~l~~~-----~~~~~~~~~~~L~~L~l~~n~--l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~  457 (967)
                       +++|+.|+++    .|.+++.     ++.. ...+++|+.|+++.|.  +++.....+...+++|++|++++|+++.. 
T Consensus       401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~-~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-  478 (592)
T 3ogk_B          401 YLKNLCDFRLVLLDREERITDLPLDNGVRSL-LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE-  478 (592)
T ss_dssp             HCCSCCEEEEEECSCCSCCSSCCCHHHHHHH-HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH-
T ss_pred             hCCCCcEEEEeecCCCccccCchHHHHHHHH-HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH-
Confidence             5555555553    3334332     1110 1124555555554332  33333333333455566666655555421 


Q ss_pred             cCCCCCccCCC-CCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccC
Q 046844          458 LASSKPRAIPI-LKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVS  513 (967)
Q Consensus       458 ~~~~~~~~ip~-l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  513 (967)
                             .++. +..+++|++|++++|.+++.....+.. ..++|++|++++|+++.
T Consensus       479 -------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          479 -------GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT-KLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             -------HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH-HCSSCCEEEEESCBCCT
T ss_pred             -------HHHHHHhcCcccCeeeccCCCCcHHHHHHHHH-hcCccCeeECcCCcCCH
Confidence                   1112 344555666666666554332222211 12456666666665544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=6.9e-28  Score=267.72  Aligned_cols=274  Identities=17%  Similarity=0.219  Sum_probs=213.5

Q ss_pred             eeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECC
Q 046844          547 VDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLG  626 (967)
Q Consensus       547 L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls  626 (967)
                      .+++++.++.+|..+.   +.++.  |++++|.+++..+..+.++++|++|++++|++++..|..+....  +|++|+++
T Consensus        36 c~~~~~~l~~iP~~~~---~~L~~--L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls  108 (353)
T 2z80_A           36 CKGSSGSLNSIPSGLT---EAVKS--LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG--SLEHLDLS  108 (353)
T ss_dssp             EECCSTTCSSCCTTCC---TTCCE--EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECC
T ss_pred             eeCCCCCccccccccc---ccCcE--EECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC--CCCEEECC
Confidence            4444555555554332   22333  66666666665556777888899999999988876676676665  89999999


Q ss_pred             CCcCcccCCCCCCCCCCcccEEeCCCCccCCCCc-ccccCCCCCCEEECCCC-ccccccchhhhcCCCCCEEEccCCccc
Q 046844          627 RNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP-KSLANCNMLQVLDLRSN-YISDNFPCWLRNASSLQVLVLRSNNFS  704 (967)
Q Consensus       627 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~  704 (967)
                      +|+++ .+|...|..+++|++|++++|++++..+ ..|..+++|++|++++| .+++..|..|.++++|++|++++|+++
T Consensus       109 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          109 YNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             SSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            99988 5665557888899999999999986554 57888999999999998 577777788899999999999999999


Q ss_pred             eecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccC
Q 046844          705 GHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVP  784 (967)
Q Consensus       705 ~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  784 (967)
                      +..  |..+..+++|+.|++++|++. .+|..++                                           ..+
T Consensus       188 ~~~--~~~l~~l~~L~~L~l~~n~l~-~~~~~~~-------------------------------------------~~~  221 (353)
T 2z80_A          188 SYE--PKSLKSIQNVSHLILHMKQHI-LLLEIFV-------------------------------------------DVT  221 (353)
T ss_dssp             EEC--TTTTTTCSEEEEEEEECSCST-THHHHHH-------------------------------------------HHT
T ss_pred             ccC--HHHHhccccCCeecCCCCccc-cchhhhh-------------------------------------------hhc
Confidence            887  888999999999999999984 4443322                                           135


Q ss_pred             CcceEEECCCCcccCCCccccc---CCCCCcEEECCCCCCcc----cCCccccCCCCCCeEeCcCccccccCCcc-ccCC
Q 046844          785 NIFTSIDFSSNNFEGPIPVEMG---RFRSLYALNMSHNALTG----SIPSSFGNLKEIESLDLSMNNLSGKIPAQ-LASL  856 (967)
Q Consensus       785 ~~l~~l~Ls~N~l~g~ip~~~~---~l~~L~~L~Ls~N~l~g----~ip~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l  856 (967)
                      +.|+.|++++|++++..+..+.   ....++.++|++|.+++    .+|..++++++|+.|||++|+++ .+|.. +.++
T Consensus       222 ~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l  300 (353)
T 2z80_A          222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL  300 (353)
T ss_dssp             TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcC
Confidence            6789999999999987665543   35678899999999987    58888999999999999999999 56655 5899


Q ss_pred             CCCCeEEccCCccccCCCC
Q 046844          857 NFLSVLNLSYNNLVGKIPT  875 (967)
Q Consensus       857 ~~L~~l~ls~N~l~g~ip~  875 (967)
                      +.|++|++++|+++|..|.
T Consensus       301 ~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          301 TSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             TTCCEEECCSSCBCCCHHH
T ss_pred             CCCCEEEeeCCCccCcCCC
Confidence            9999999999999998873

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2e-27  Score=260.14  Aligned_cols=225  Identities=21%  Similarity=0.236  Sum_probs=195.9

Q ss_pred             CCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCC
Q 046844          591 ATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQ  670 (967)
Q Consensus       591 ~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  670 (967)
                      .+.++.|++++|.++ .+|..+..+.  +|++|+|++|.++ .+|.. |..+++|++|+|++|+++ .+|..+..+++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~--~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~  153 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLS--HLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPLR-ALPASIASLNRLR  153 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGT--TCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred             ccceeEEEccCCCch-hcChhhhhCC--CCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence            467889999999988 7888877765  8999999999998 88877 788889999999999998 6788899999999


Q ss_pred             EEECCCCccccccchhhhc---------CCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHH
Q 046844          671 VLDLRSNYISDNFPCWLRN---------ASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTM  741 (967)
Q Consensus       671 ~L~Ls~N~l~~~~p~~l~~---------l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~  741 (967)
                      +|++++|.+.+.+|..+..         +++|++|+|++|+++ .+  |..+..+++|+.|++++|++++ +|..+    
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~l--p~~l~~l~~L~~L~L~~N~l~~-l~~~l----  225 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SL--PASIANLQNLKSLKIRNSPLSA-LGPAI----  225 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CC--CGGGGGCTTCCEEEEESSCCCC-CCGGG----
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cc--hHhhcCCCCCCEEEccCCCCCc-Cchhh----
Confidence            9999998888888877654         899999999999988 33  8888899999999999999885 33221    


Q ss_pred             hhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCC
Q 046844          742 MVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNAL  821 (967)
Q Consensus       742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l  821 (967)
                                                              ..++.|+.|++++|++.+.+|..++.+++|+.|+|++|++
T Consensus       226 ----------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~  265 (328)
T 4fcg_A          226 ----------------------------------------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN  265 (328)
T ss_dssp             ----------------------------------------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred             ----------------------------------------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence                                                    1467789999999999999999999999999999999999


Q ss_pred             cccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCcc
Q 046844          822 TGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL  869 (967)
Q Consensus       822 ~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l  869 (967)
                      .+.+|..++++++|+.|||++|++.|.+|..+.+++.|+.++++.|.+
T Consensus       266 ~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            999999999999999999999999999999999999999999987655

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.2e-27  Score=260.31  Aligned_cols=212  Identities=26%  Similarity=0.310  Sum_probs=115.2

Q ss_pred             hhcCCCCcEEEcccCcCCC--CCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCc-cccc
Q 046844          588 VCKATNFQVLDLSNNNLSG--TIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP-KSLA  664 (967)
Q Consensus       588 ~~~~~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~  664 (967)
                      +.++++|++|++++|+++.  ..|..+....  +|++|++++|.+. .+|.. |..+++|++|++++|++++..+ ..+.
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~--~L~~L~Ls~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~  123 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT--SLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL  123 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCS--CCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTT
T ss_pred             hhccccCCEEECCCCccCcccCccccccccc--ccCEEECCCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhh
Confidence            4455555556665555542  1123333322  5555555555554 34433 4445555555555555554333 3444


Q ss_pred             CCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccce-ecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhh
Q 046844          665 NCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSG-HISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMV  743 (967)
Q Consensus       665 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~  743 (967)
                      .+++|++|++++|++++..|..+.++++|++|++++|.+++ .+  |..+..++                          
T Consensus       124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~--------------------------  175 (306)
T 2z66_A          124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL--PDIFTELR--------------------------  175 (306)
T ss_dssp             TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE--CSCCTTCT--------------------------
T ss_pred             hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc--hhHHhhCc--------------------------
Confidence            55555555555555555444445555555555555555443 22  33344444                          


Q ss_pred             cccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcc
Q 046844          744 AETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTG  823 (967)
Q Consensus       744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g  823 (967)
                                                                .|+.|++++|++++..|..|+.+++|+.|+|++|++++
T Consensus       176 ------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  213 (306)
T 2z66_A          176 ------------------------------------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS  213 (306)
T ss_dssp             ------------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred             ------------------------------------------CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence                                                      45555555555555555666666666666666666666


Q ss_pred             cCCccccCCCCCCeEeCcCccccccCCccccCCC-CCCeEEccCCccccCC
Q 046844          824 SIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLN-FLSVLNLSYNNLVGKI  873 (967)
Q Consensus       824 ~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~l~ls~N~l~g~i  873 (967)
                      ..+..++.+++|+.|||++|++++.+|..+..++ .|++|++++|.+++..
T Consensus       214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            5555666666666666666666666666666663 6666666666666543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.1e-28  Score=268.77  Aligned_cols=245  Identities=20%  Similarity=0.220  Sum_probs=187.0

Q ss_pred             eeecCCcccccCChhhhcCCCCcEEEcccCcCC-CCCCcccc-------cCCCCCccEEECCCCcCcccCCCCCC-CCCC
Q 046844          573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLS-GTIPACLI-------TKSSSTLEVLNLGRNNLNGTLSDTIF-PGDC  643 (967)
Q Consensus       573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~-~~~p~~~~-------~~~~~~L~~L~Ls~N~l~~~ip~~~~-~~l~  643 (967)
                      +++++|.+  .+|..+...  |+.|++++|+++ +.+|..+.       ...  +|++|+|++|++++.+|..+| ..++
T Consensus        48 l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~l~  121 (312)
T 1wwl_A           48 LLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS--GLQELTLENLEVTGTAPPPLLEATGP  121 (312)
T ss_dssp             HHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS--CCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred             Eeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC--CccEEEccCCcccchhHHHHHHhcCC
Confidence            55556665  555555443  667777777763 34554443       333  777777777777777777633 7778


Q ss_pred             cccEEeCCCCccCCCCcccccCC-----CCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCC--CCC
Q 046844          644 GLQILDLSGNQLQGVVPKSLANC-----NMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNK--VSW  716 (967)
Q Consensus       644 ~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~--~~l  716 (967)
                      +|++|+|++|++++. |..+..+     ++|++|++++|++++..|..|+++++|++|++++|++.|.+..|..+  ..+
T Consensus       122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            888888888888877 7777766     88888888888888888888888888888888888877653223333  778


Q ss_pred             CCCcEEecCCccCcC--cCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCC
Q 046844          717 PLLQIVDLACNKFSG--RLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSS  794 (967)
Q Consensus       717 ~~L~~Ldls~N~l~g--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~  794 (967)
                      ++|+.|++++|++++  .++...+                                           ..++.|+.||+++
T Consensus       201 ~~L~~L~L~~N~l~~~~~~~~~~~-------------------------------------------~~l~~L~~L~Ls~  237 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGVCSALA-------------------------------------------AARVQLQGLDLSH  237 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHHH-------------------------------------------HTTCCCSEEECTT
T ss_pred             CCCCEEECCCCcCcchHHHHHHHH-------------------------------------------hcCCCCCEEECCC
Confidence            899999999998874  2222211                                           1356789999999


Q ss_pred             CcccCCCc-ccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccC
Q 046844          795 NNFEGPIP-VEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGK  872 (967)
Q Consensus       795 N~l~g~ip-~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~  872 (967)
                      |++++.+| ..+..+++|++|+|++|+++ .+|..+.  ++|+.|||++|+|++. |. +..++.|++|++++|++++.
T Consensus       238 N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          238 NSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             SCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             CcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            99999886 55777899999999999999 8999887  8999999999999987 66 89999999999999999874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=3.4e-27  Score=256.62  Aligned_cols=200  Identities=20%  Similarity=0.240  Sum_probs=155.1

Q ss_pred             EEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccc--cCChhhhcCCCCcEEEcccC
Q 046844          525 FLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAG--VIPESVCKATNFQVLDLSNN  602 (967)
Q Consensus       525 ~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~--~~p~~~~~~~~L~~L~Ls~N  602 (967)
                      .++++++.++..+...++++++|++++|+++.+|..++..++.++.  |++++|.++.  ..+..+..+++|++|++++|
T Consensus        11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~--L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTK--LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSE--EECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCE--EECCCCccCcccCcccccccccccCEEECCCC
Confidence            3444454444433333455666666666666666555444555555  7777777763  34667778899999999999


Q ss_pred             cCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCcccc-
Q 046844          603 NLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISD-  681 (967)
Q Consensus       603 ~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-  681 (967)
                      .+. .+|..+....  +|++|++++|++++..+...|..+++|++|++++|.+++..|..|..+++|++|++++|++++ 
T Consensus        89 ~i~-~l~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           89 GVI-TMSSNFLGLE--QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SEE-EEEEEEETCT--TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             ccc-cChhhcCCCC--CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            998 5777777665  999999999999954442458999999999999999999999999999999999999999987 


Q ss_pred             ccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcC
Q 046844          682 NFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSG  731 (967)
Q Consensus       682 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g  731 (967)
                      ..|..+..+++|++|++++|++++..  |..+..+++|+.|++++|++++
T Consensus       166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~  213 (306)
T 2z66_A          166 FLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFS  213 (306)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCSB
T ss_pred             cchhHHhhCcCCCEEECCCCCcCCcC--HHHhcCCCCCCEEECCCCccCc
Confidence            68899999999999999999999886  7777777777777777776653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2.6e-27  Score=259.20  Aligned_cols=256  Identities=22%  Similarity=0.298  Sum_probs=167.6

Q ss_pred             cCCCC--CCCCCCCcccceeEeCC--------C-CcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCc
Q 046844           18 LSQWS--SHQSSDCCDWSGVRCDE--------A-GHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPS   86 (967)
Q Consensus        18 l~~w~--~~~~~~~c~w~gv~C~~--------~-~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~   86 (967)
                      +++|.  .....++|.|.|+.|+.        . .+|+.|+|+++.+. .+  +..++++++|++|+|++|.+.  .+|.
T Consensus        47 ~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l--p~~l~~l~~L~~L~L~~n~l~--~lp~  121 (328)
T 4fcg_A           47 HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF--PDQAFRLSHLQHMTIDAAGLM--ELPD  121 (328)
T ss_dssp             HHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC--CSCGGGGTTCSEEEEESSCCC--CCCS
T ss_pred             hhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hc--ChhhhhCCCCCEEECCCCCcc--chhH
Confidence            56672  02356899999999952        2 68999999998887 56  677888999999999999988  4888


Q ss_pred             cccCCCCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchh
Q 046844           87 RLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTE  166 (967)
Q Consensus        87 ~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~  166 (967)
                      .++++++|++|+|++|.+. .+|..++++++|++|++++|+...        .+|.      .+....            
T Consensus       122 ~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~--------~~p~------~~~~~~------------  174 (328)
T 4fcg_A          122 TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT--------ELPE------PLASTD------------  174 (328)
T ss_dssp             CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC--------CCCS------CSEEEC------------
T ss_pred             HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc--------ccCh------hHhhcc------------
Confidence            8999999999999999988 889889999999999998764332        0000      000000            


Q ss_pred             HHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCC
Q 046844          167 WCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHV  246 (967)
Q Consensus       167 ~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l  246 (967)
                      ....+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+                         +|..+..+
T Consensus       175 ~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-------------------------l~~~l~~l  228 (328)
T 4fcg_A          175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-------------------------LGPAIHHL  228 (328)
T ss_dssp             -CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-------------------------CCGGGGGC
T ss_pred             chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-------------------------CchhhccC
Confidence            0011233455555555555554 334444444455555544444443                         33344444


Q ss_pred             CCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEc
Q 046844          247 PTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDF  326 (967)
Q Consensus       247 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  326 (967)
                      ++|++|++++|.+.......+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+.++++|+.+++
T Consensus       229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l  308 (328)
T 4fcg_A          229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV  308 (328)
T ss_dssp             TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence            55555555544443333334445555666666666666677777778888888888888887788888888888888877


Q ss_pred             cCccc
Q 046844          327 SSNHF  331 (967)
Q Consensus       327 ~~n~l  331 (967)
                      ..+.+
T Consensus       309 ~~~~~  313 (328)
T 4fcg_A          309 PPHLQ  313 (328)
T ss_dssp             CGGGS
T ss_pred             CHHHH
Confidence            76544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.3e-27  Score=265.57  Aligned_cols=279  Identities=19%  Similarity=0.214  Sum_probs=216.7

Q ss_pred             CccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEccc
Q 046844          522 GIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSN  601 (967)
Q Consensus       522 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~  601 (967)
                      .....+++++.++..+....+++++|++++|+++.++......++.++.  |++++|.+++..|..+.++++|++|++++
T Consensus        32 ~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~--L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           32 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQA--LVLTSNGINTIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             TTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCE--EECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCE--EECCCCccCccCHhhcCCCCCCCEEECCC
Confidence            3444566666666544444556777777777777666644445566666  88888888888888888999999999999


Q ss_pred             CcCCCCCCcc-cccCCCCCccEEECCCCcCcccCCC-CCCCCCCcccEEeCCCC-ccCCCCcccccCCCCCCEEECCCCc
Q 046844          602 NNLSGTIPAC-LITKSSSTLEVLNLGRNNLNGTLSD-TIFPGDCGLQILDLSGN-QLQGVVPKSLANCNMLQVLDLRSNY  678 (967)
Q Consensus       602 N~l~~~~p~~-~~~~~~~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~N~  678 (967)
                      |++++ +|.. +....  +|++|++++|+++ .+|. ..|..+++|++|++++| .+.+..+..|.++++|++|++++|+
T Consensus       110 n~l~~-~~~~~~~~l~--~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          110 NYLSN-LSSSWFKPLS--SLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             SCCSS-CCHHHHTTCT--TCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             CcCCc-CCHhHhCCCc--cCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            99984 5544 55555  8999999999998 6776 55888999999999998 5777777889999999999999999


Q ss_pred             cccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccccccccc
Q 046844          679 ISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIE  758 (967)
Q Consensus       679 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  758 (967)
                      +++..|.++.++++|++|++++|++....  +..+..+++|+.|++++|++++..+..+.                    
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--------------------  243 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLL--EIFVDVTSSVECLELRDTDLDTFHFSELS--------------------  243 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHH--HHHHHHTTTEEEEEEESCBCTTCCCC-----------------------
T ss_pred             cCccCHHHHhccccCCeecCCCCccccch--hhhhhhcccccEEECCCCccccccccccc--------------------
Confidence            99988999999999999999999986543  22344578999999999999875442210                    


Q ss_pred             CCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccC----CCcccccCCCCCcEEECCCCCCcccCCcc-ccCCC
Q 046844          759 MPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEG----PIPVEMGRFRSLYALNMSHNALTGSIPSS-FGNLK  833 (967)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g----~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~-~~~l~  833 (967)
                                           .......++.++|+++.+++    .+|..++.+++|+.|||++|+++ .+|.. |++++
T Consensus       244 ---------------------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~  301 (353)
T 2z80_A          244 ---------------------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLT  301 (353)
T ss_dssp             ------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred             ---------------------cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCC
Confidence                                 00123456677788888776    58889999999999999999999 57766 59999


Q ss_pred             CCCeEeCcCccccccCC
Q 046844          834 EIESLDLSMNNLSGKIP  850 (967)
Q Consensus       834 ~L~~LdLs~N~l~g~ip  850 (967)
                      +|+.|+|++|.+++..|
T Consensus       302 ~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          302 SLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TCCEEECCSSCBCCCHH
T ss_pred             CCCEEEeeCCCccCcCC
Confidence            99999999999998776

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=5.1e-26  Score=261.51  Aligned_cols=231  Identities=24%  Similarity=0.217  Sum_probs=167.0

Q ss_pred             CCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCE
Q 046844          592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV  671 (967)
Q Consensus       592 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  671 (967)
                      +++++|+|++|++++..|..+..+.  +|++|+|++|++++..|.. |.++++|++|+|++|++++..+..|..+++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLH--HLEVLQLGRNSIRQIEVGA-FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCT--TCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred             CCccEEECcCCcCceECHHHcCCCC--CCCEEECCCCccCCcChhh-ccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence            3566666666666655555555544  6667777777666433333 677777777777777777666666777777777


Q ss_pred             EECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcc
Q 046844          672 LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSE  751 (967)
Q Consensus       672 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~  751 (967)
                      |+|++|++++..+..|.++++|+.|++++|...+.+. +..+..+++|+.|++++|++++. |.                
T Consensus       152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~-~~----------------  213 (452)
T 3zyi_A          152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKDM-PN----------------  213 (452)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSCCSSC-CC----------------
T ss_pred             EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCccccc-cc----------------
Confidence            7777777776666667777777777777743333331 34566777777777777777532 20                


Q ss_pred             cccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccC
Q 046844          752 VNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGN  831 (967)
Q Consensus       752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  831 (967)
                                                   ...++.|+.|||++|++++..|..|+.+++|+.|+|++|++++..|..|++
T Consensus       214 -----------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  264 (452)
T 3zyi_A          214 -----------------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG  264 (452)
T ss_dssp             -----------------------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             -----------------------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence                                         113567888888888888888888888999999999999999888888889


Q ss_pred             CCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccC
Q 046844          832 LKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGK  872 (967)
Q Consensus       832 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~  872 (967)
                      +++|+.|||++|+|++..+..+..++.|+.|++++|.+...
T Consensus       265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            99999999999999888888888888999999999887543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=5.3e-26  Score=260.43  Aligned_cols=229  Identities=23%  Similarity=0.231  Sum_probs=142.8

Q ss_pred             CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844          593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL  672 (967)
Q Consensus       593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  672 (967)
                      +++.|+|++|++++..+..+..+.  +|++|+|++|.++ .++...|.++++|++|+|++|++++..+..|..+++|++|
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLR--HLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCS--SCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCC--CCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence            344455555555433334443333  4555555555554 2222225555555555555555555544455555556666


Q ss_pred             ECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccc
Q 046844          673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEV  752 (967)
Q Consensus       673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~  752 (967)
                      ++++|++++..+..|.++++|+.|++++|...+.+. +..+..+++|+.|++++|+++. +|.                 
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~-~~~-----------------  202 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLRE-IPN-----------------  202 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSS-CCC-----------------
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCcc-ccc-----------------
Confidence            666665555555555556666666665533222221 3345556666666666666541 220                 


Q ss_pred             ccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCC
Q 046844          753 NHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNL  832 (967)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l  832 (967)
                                                  ...++.|+.|||++|++++..|..|..+++|+.|+|++|++++..|..|.++
T Consensus       203 ----------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  254 (440)
T 3zyj_A          203 ----------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL  254 (440)
T ss_dssp             ----------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred             ----------------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence                                        0134567777888888877778888888888888888888888888888888


Q ss_pred             CCCCeEeCcCccccccCCccccCCCCCCeEEccCCcccc
Q 046844          833 KEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG  871 (967)
Q Consensus       833 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g  871 (967)
                      ++|+.|||++|+|++..+..+..++.|+.|++++|.+..
T Consensus       255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            888888888888888777778888888888888887754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.4e-26  Score=248.96  Aligned_cols=229  Identities=21%  Similarity=0.213  Sum_probs=178.0

Q ss_pred             cEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEEC
Q 046844          595 QVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDL  674 (967)
Q Consensus       595 ~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  674 (967)
                      +.++.+++.++ .+|..+    .++|++|++++|.+++ ++...|..+++|++|++++|++++..|..|..+++|++|++
T Consensus        14 ~~~~c~~~~l~-~ip~~~----~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   87 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI----PAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC----CTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             eEEEcCcCCcc-cCCcCC----CCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence            56777777776 566544    2278888888888874 44333778888888888888888777778888888888888


Q ss_pred             CCCc-cccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccc
Q 046844          675 RSNY-ISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVN  753 (967)
Q Consensus       675 s~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~  753 (967)
                      ++|+ ++...|..|..+++|++|++++|++++..  |..+..+++|+.|++++|++++..+..+                
T Consensus        88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------------  149 (285)
T 1ozn_A           88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPDDTF----------------  149 (285)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTT----------------
T ss_pred             CCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC--HhHhhCCcCCCEEECCCCcccccCHhHh----------------
Confidence            8886 77766778888888888888888887765  6677788888888888888765433111                


Q ss_pred             cccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCC
Q 046844          754 HLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLK  833 (967)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~  833 (967)
                                                  ..++.|+.|++++|++++..+..|+.+++|+.|+|++|.+++.+|..|++++
T Consensus       150 ----------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  201 (285)
T 1ozn_A          150 ----------------------------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (285)
T ss_dssp             ----------------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             ----------------------------ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcc
Confidence                                        1356788888888888877666788888888999999988888888888888


Q ss_pred             CCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCC
Q 046844          834 EIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT  875 (967)
Q Consensus       834 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~  875 (967)
                      +|+.||+++|++++..|..+..++.|++|++++|++.+..+.
T Consensus       202 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             cccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            899999999988887777788888888999998888876653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=2.5e-25  Score=261.64  Aligned_cols=194  Identities=23%  Similarity=0.309  Sum_probs=93.4

Q ss_pred             CccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCc
Q 046844          474 QLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNN  553 (967)
Q Consensus       474 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~  553 (967)
                      +++.|++++|.++ .+|..+.    ++|+.|++++|.++.++.  .+++|++|++++|++++ +|..+++|++|++++|+
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~----~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNP  112 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC----TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC-CCCCCTTCCEEEECSCC
T ss_pred             CCcEEEecCCCcC-ccChhhC----CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc-CCCCCCCCCEEECcCCc
Confidence            4666666666666 4454332    345666666665555544  34455555555555443 22233344444444443


Q ss_pred             CCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCccc
Q 046844          554 FTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGT  633 (967)
Q Consensus       554 l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~  633 (967)
                      ++.+|.                              .+++|+.|++++|+++ .+|..+   .  +|++|++++|+++ .
T Consensus       113 l~~l~~------------------------------~l~~L~~L~L~~N~l~-~lp~~l---~--~L~~L~Ls~N~l~-~  155 (622)
T 3g06_A          113 LTHLPA------------------------------LPSGLCKLWIFGNQLT-SLPVLP---P--GLQELSVSDNQLA-S  155 (622)
T ss_dssp             CCCCCC------------------------------CCTTCCEEECCSSCCS-CCCCCC---T--TCCEEECCSSCCS-C
T ss_pred             CCCCCC------------------------------CCCCcCEEECCCCCCC-cCCCCC---C--CCCEEECcCCcCC-C
Confidence            333221                              2345555555555555 344321   1  5555555555555 3


Q ss_pred             CCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCC
Q 046844          634 LSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNK  713 (967)
Q Consensus       634 ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~  713 (967)
                      +|..    ..+|+.|++++|++++ +|   ..+++|+.|++++|++++ +|.   .+++|+.|++++|.++..   |.  
T Consensus       156 l~~~----~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l---~~--  218 (622)
T 3g06_A          156 LPAL----PSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL---PA--  218 (622)
T ss_dssp             CCCC----CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC---CC--
T ss_pred             cCCc----cCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc---CC--
Confidence            3332    2345555555555553 23   234555555555555554 221   134555555555555432   22  


Q ss_pred             CCCCCCcEEecCCccCc
Q 046844          714 VSWPLLQIVDLACNKFS  730 (967)
Q Consensus       714 ~~l~~L~~Ldls~N~l~  730 (967)
                       .+++|+.|++++|+++
T Consensus       219 -~~~~L~~L~Ls~N~L~  234 (622)
T 3g06_A          219 -LPSGLKELIVSGNRLT  234 (622)
T ss_dssp             -CCTTCCEEECCSSCCS
T ss_pred             -CCCCCCEEEccCCccC
Confidence             1244555555555444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=6.5e-25  Score=258.14  Aligned_cols=263  Identities=27%  Similarity=0.302  Sum_probs=204.0

Q ss_pred             CcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCc
Q 046844          500 NLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNS  579 (967)
Q Consensus       500 ~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~  579 (967)
                      +++.|++++|.++.+|.... ++|+.|++++|.++. +|..+++|++|++++|+++.+|                     
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp---------------------   97 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLP---------------------   97 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSCCC---------------------
T ss_pred             CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCcCC---------------------
Confidence            46666666666666655433 556666666666553 2224445555555555444333                     


Q ss_pred             ccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCC
Q 046844          580 LAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVV  659 (967)
Q Consensus       580 l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~  659 (967)
                            .   .+++|++|++++|+++ .+|.   ...  +|+.|++++|+++ .+|..    +++|++|++++|++++. 
T Consensus        98 ------~---~l~~L~~L~Ls~N~l~-~l~~---~l~--~L~~L~L~~N~l~-~lp~~----l~~L~~L~Ls~N~l~~l-  156 (622)
T 3g06_A           98 ------V---LPPGLLELSIFSNPLT-HLPA---LPS--GLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLASL-  156 (622)
T ss_dssp             ------C---CCTTCCEEEECSCCCC-CCCC---CCT--TCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSCC-
T ss_pred             ------C---CCCCCCEEECcCCcCC-CCCC---CCC--CcCEEECCCCCCC-cCCCC----CCCCCEEECcCCcCCCc-
Confidence                  2   4678999999999998 4665   223  8999999999998 57764    37899999999999964 


Q ss_pred             cccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHH
Q 046844          660 PKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLL  739 (967)
Q Consensus       660 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~  739 (967)
                      |.   ..++|+.|++++|++++ +|   ..+++|+.|++++|++++.   |..   +++|+.|++++|.++. +|.    
T Consensus       157 ~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l---~~~---~~~L~~L~L~~N~l~~-l~~----  218 (622)
T 3g06_A          157 PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL---PTL---PSELYKLWAYNNRLTS-LPA----  218 (622)
T ss_dssp             CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC---CCC---CTTCCEEECCSSCCSS-CCC----
T ss_pred             CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC---CCc---cchhhEEECcCCcccc-cCC----
Confidence            43   35789999999999998 45   4579999999999999875   432   4789999999999873 321    


Q ss_pred             HHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCC
Q 046844          740 TMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHN  819 (967)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N  819 (967)
                                                                 .++.|+.|++++|++++ +|   ..+++|+.|+|++|
T Consensus       219 -------------------------------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N  251 (622)
T 3g06_A          219 -------------------------------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGN  251 (622)
T ss_dssp             -------------------------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS
T ss_pred             -------------------------------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCC
Confidence                                                       24678999999999997 66   55689999999999


Q ss_pred             CCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC
Q 046844          820 ALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS  876 (967)
Q Consensus       820 ~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~  876 (967)
                      +|+ .+|.   .+++|+.|+|++|+|+ .+|..+.+++.|+.|++++|+++|.+|..
T Consensus       252 ~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~  303 (622)
T 3g06_A          252 RLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  303 (622)
T ss_dssp             CCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred             CCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence            999 5777   6789999999999999 78999999999999999999999988853

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=9.9e-28  Score=261.81  Aligned_cols=264  Identities=19%  Similarity=0.152  Sum_probs=200.5

Q ss_pred             eeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECC
Q 046844          547 VDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLG  626 (967)
Q Consensus       547 L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls  626 (967)
                      .+++++.+...+..+....+.++.  |++++|.+++..|..+..+++|++|++++|++++..|  +....  +|++|+++
T Consensus        15 ~~ls~~~l~~~~~~~~~~~~~L~~--L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~--~L~~L~Ls   88 (317)
T 3o53_A           15 EKVTDSSLKQALASLRQSAWNVKE--LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS--TLRTLDLN   88 (317)
T ss_dssp             ESCCTTTHHHHHHHHHTTGGGCSE--EECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCT--TCCEEECC
T ss_pred             eeccccchhhhHHHHhccCCCCCE--EECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcC--CCCEEECc
Confidence            344444444444444444444555  7777777777777778888888888888888875443  54444  88888888


Q ss_pred             CCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCcccee
Q 046844          627 RNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGH  706 (967)
Q Consensus       627 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  706 (967)
                      +|++++ ++     ..++|++|++++|++++..+..   +++|++|++++|++++..+..+..+++|++|++++|++++.
T Consensus        89 ~n~l~~-l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           89 NNYVQE-LL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             SSEEEE-EE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             CCcccc-cc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            888874 33     2368888888888888665543   56788888888888888787888888888888888888876


Q ss_pred             cCCCCCC-CCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCC
Q 046844          707 ISCPRNK-VSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPN  785 (967)
Q Consensus       707 ~~~p~~~-~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  785 (967)
                      .  +..+ ..+++|+.|++++|++++..+                                              ...++
T Consensus       160 ~--~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------------------------------~~~l~  191 (317)
T 3o53_A          160 N--FAELAASSDTLEHLNLQYNFIYDVKG----------------------------------------------QVVFA  191 (317)
T ss_dssp             E--GGGGGGGTTTCCEEECTTSCCCEEEC----------------------------------------------CCCCT
T ss_pred             c--HHHHhhccCcCCEEECCCCcCccccc----------------------------------------------ccccc
Confidence            5  5555 367888888888888764311                                              01256


Q ss_pred             cceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCcccc-ccCCccccCCCCCCeEEc
Q 046844          786 IFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS-GKIPAQLASLNFLSVLNL  864 (967)
Q Consensus       786 ~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~l~l  864 (967)
                      .|+.|++++|++++. |..++.+++|+.|+|++|+++ .+|..++.+++|+.||+++|.++ +.+|..+..++.|+.+++
T Consensus       192 ~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l  269 (317)
T 3o53_A          192 KLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (317)
T ss_dssp             TCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred             cCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence            788999999999865 445899999999999999999 57888999999999999999998 888899999999999999


Q ss_pred             c-CCccccCCCC
Q 046844          865 S-YNNLVGKIPT  875 (967)
Q Consensus       865 s-~N~l~g~ip~  875 (967)
                      + .+.++|..|.
T Consensus       270 ~~~~~l~~~~~~  281 (317)
T 3o53_A          270 QTVKKLTGQNEE  281 (317)
T ss_dssp             HHHHHHHSSSSC
T ss_pred             CCchhccCCchh
Confidence            8 5568887664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=3.7e-25  Score=254.33  Aligned_cols=250  Identities=23%  Similarity=0.195  Sum_probs=215.5

Q ss_pred             CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844          593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL  672 (967)
Q Consensus       593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  672 (967)
                      ....++.+++.++ .+|..+.    ++++.|+|++|++++..|.. |..+++|++|+|++|++++..|..|.++++|++|
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~----~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  128 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP----SNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL  128 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC----TTCSEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCcEEEECCCCcC-ccCCCCC----CCccEEECcCCcCceECHHH-cCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence            4568889999988 7887653    38999999999999655665 9999999999999999999999999999999999


Q ss_pred             ECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccc
Q 046844          673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEV  752 (967)
Q Consensus       673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~  752 (967)
                      +|++|++++..+..|.++++|++|+|++|++++..  +..+..+++|+.|++++|+..+.+|...               
T Consensus       129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~~~~l~~i~~~~---------------  191 (452)
T 3zyi_A          129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP--SYAFNRVPSLMRLDLGELKKLEYISEGA---------------  191 (452)
T ss_dssp             ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC--TTTTTTCTTCCEEECCCCTTCCEECTTT---------------
T ss_pred             ECCCCcCCccChhhhcccCCCCEEECCCCCcceeC--HhHHhcCCcccEEeCCCCCCccccChhh---------------
Confidence            99999999988888999999999999999999876  6789999999999999977665555321               


Q ss_pred             ccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCC
Q 046844          753 NHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNL  832 (967)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l  832 (967)
                                                  ...++.|+.|+|++|++++. | .+..+++|+.|+|++|++++..|..|+++
T Consensus       192 ----------------------------~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  241 (452)
T 3zyi_A          192 ----------------------------FEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGL  241 (452)
T ss_dssp             ----------------------------TTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred             ----------------------------ccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCc
Confidence                                        12567899999999999965 5 48999999999999999999999999999


Q ss_pred             CCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC-CcCCccCCCccCCCCCCCC
Q 046844          833 KEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYEGNKGLYG  895 (967)
Q Consensus       833 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lcg  895 (967)
                      ++|+.|+|++|++++..|..+.++++|+.|++++|++++..+.. ..+..+....+.+||.-|.
T Consensus       242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            99999999999999999999999999999999999999766543 2233444555678875553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=5.5e-27  Score=255.30  Aligned_cols=248  Identities=21%  Similarity=0.232  Sum_probs=193.3

Q ss_pred             CCceeeccCCcCCCCCcchhccccccceeeeeecCCcc-cccCChhhh-------cCCCCcEEEcccCcCCCCCCccc--
Q 046844          543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSL-AGVIPESVC-------KATNFQVLDLSNNNLSGTIPACL--  612 (967)
Q Consensus       543 ~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l-~~~~p~~~~-------~~~~L~~L~Ls~N~l~~~~p~~~--  612 (967)
                      +++++++++|.+ .+|..+...   ++.  +++++|.+ .+.+|..+.       ++++|++|++++|++++.+|..+  
T Consensus        44 ~L~~l~l~~n~l-~~p~~~~~~---L~~--L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           44 SLEYLLKRVDTE-ADLGQFTDI---IKS--LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             ECTTHHHHCCTT-CCCHHHHHH---HHH--CCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CceeEeeccccc-ccHHHHHHH---Hhh--cccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            455566666666 666655433   334  77788887 456666665       68899999999999998888876  


Q ss_pred             ccCCCCCccEEECCCCcCcccCCCCCCCCC-----CcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccc--cch
Q 046844          613 ITKSSSTLEVLNLGRNNLNGTLSDTIFPGD-----CGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDN--FPC  685 (967)
Q Consensus       613 ~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~  685 (967)
                      ....  +|++|+|++|++++. |.. |..+     ++|++|+|++|++++..|..|..+++|++|++++|++.+.  .|.
T Consensus       118 ~~l~--~L~~L~Ls~N~l~~~-~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          118 ATGP--DLNILNLRNVSWATR-DAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             CCSC--CCSEEEEESCBCSSS-SSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             hcCC--CccEEEccCCCCcch-hHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            4444  899999999999865 654 6555     8899999999999988889999999999999999998775  344


Q ss_pred             hh--hcCCCCCEEEccCCccceecCCC-CCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCC
Q 046844          686 WL--RNASSLQVLVLRSNNFSGHISCP-RNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSN  762 (967)
Q Consensus       686 ~l--~~l~~L~~L~L~~N~l~~~~~~p-~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  762 (967)
                      .+  .++++|++|++++|++++....+ ..+..+++|+.||+++|++++.+|...                         
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------------------------  248 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS-------------------------  248 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC-------------------------
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh-------------------------
Confidence            44  78999999999999998432112 233577899999999999987664211                         


Q ss_pred             ceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcC
Q 046844          763 QFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSM  842 (967)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~  842 (967)
                                        ...++.|+.|+|++|+++ .+|..+.  ++|++|||++|++++. |. ++.+++|+.|||++
T Consensus       249 ------------------~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          249 ------------------CDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKG  305 (312)
T ss_dssp             ------------------CCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTT
T ss_pred             ------------------hhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccC
Confidence                              013577999999999998 8888777  8999999999999976 76 99999999999999


Q ss_pred             cccccc
Q 046844          843 NNLSGK  848 (967)
Q Consensus       843 N~l~g~  848 (967)
                      |.+++.
T Consensus       306 N~l~~~  311 (312)
T 1wwl_A          306 NPFLDS  311 (312)
T ss_dssp             CTTTCC
T ss_pred             CCCCCC
Confidence            999863

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=5.6e-25  Score=251.95  Aligned_cols=250  Identities=22%  Similarity=0.205  Sum_probs=215.8

Q ss_pred             CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844          593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL  672 (967)
Q Consensus       593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  672 (967)
                      ....++.+++.++ .+|..+.    ++++.|+|++|++++..+.. |.++++|++|+|++|++++..+..|.++++|++|
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~----~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L  117 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS----TNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL  117 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC----TTCSEEECCSCCCCEECTTT-TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred             CCCEEEeCCCCcC-cCCCCCC----CCCcEEEccCCcCCeeCHHH-hhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence            4568899999998 7887763    38999999999999554455 9999999999999999999989999999999999


Q ss_pred             ECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccc
Q 046844          673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEV  752 (967)
Q Consensus       673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~  752 (967)
                      +|++|++++..+..|..+++|++|+|++|++++..  +..+..+++|+.|++++|+..+.++...               
T Consensus       118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~l~~~~~l~~i~~~~---------------  180 (440)
T 3zyj_A          118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP--SYAFNRIPSLRRLDLGELKRLSYISEGA---------------  180 (440)
T ss_dssp             ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC--TTTTTTCTTCCEEECCCCTTCCEECTTT---------------
T ss_pred             ECCCCcCCeeCHhHhhccccCceeeCCCCcccccC--HHHhhhCcccCEeCCCCCCCcceeCcch---------------
Confidence            99999999988889999999999999999999876  6789999999999999977665555321               


Q ss_pred             ccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCC
Q 046844          753 NHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNL  832 (967)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l  832 (967)
                                                  +..++.|+.|++++|+++ .+| .++.+++|+.|+|++|++++..|..|.++
T Consensus       181 ----------------------------~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  230 (440)
T 3zyj_A          181 ----------------------------FEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL  230 (440)
T ss_dssp             ----------------------------TTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred             ----------------------------hhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccC
Confidence                                        125678999999999998 556 48999999999999999999999999999


Q ss_pred             CCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC-CcCCccCCCccCCCCCCCC
Q 046844          833 KEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYEGNKGLYG  895 (967)
Q Consensus       833 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lcg  895 (967)
                      ++|+.|+|++|++++..|..|.++++|+.|++++|++++..+.. ..+..+....+.+||.-|.
T Consensus       231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence            99999999999999999999999999999999999999766543 2334444556678886664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=2.7e-25  Score=238.83  Aligned_cols=234  Identities=21%  Similarity=0.194  Sum_probs=181.9

Q ss_pred             eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCc-CcccCCCCCCCCCCcccEEeCC
Q 046844          573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNN-LNGTLSDTIFPGDCGLQILDLS  651 (967)
Q Consensus       573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~-l~~~ip~~~~~~l~~L~~L~L~  651 (967)
                      |++++|.+++..+..+..+++|++|++++|.+++..|..+....  +|++|++++|. +. .++...|..+++|++|+++
T Consensus        37 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~  113 (285)
T 1ozn_A           37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA--LLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLD  113 (285)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT--TCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECT
T ss_pred             EEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc--CCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECC
Confidence            55555555555556677788888888888888866677776665  88888888887 65 5543348888888888888


Q ss_pred             CCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcC
Q 046844          652 GNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSG  731 (967)
Q Consensus       652 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g  731 (967)
                      +|++++..|..|..+++|++|++++|++++..+..|.++++|++|++++|++++..  +..+..+++|+.|++++|++++
T Consensus       114 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP--ERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC--HHHhcCccccCEEECCCCcccc
Confidence            88888888888888888899999888888877777888888899999988888775  5568888889999999988876


Q ss_pred             cCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCC
Q 046844          732 RLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSL  811 (967)
Q Consensus       732 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L  811 (967)
                      ..|..+                                            ..++.|+.|++++|++++..|..++.+++|
T Consensus       192 ~~~~~~--------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  227 (285)
T 1ozn_A          192 VHPHAF--------------------------------------------RDLGRLMTLYLFANNLSALPTEALAPLRAL  227 (285)
T ss_dssp             ECTTTT--------------------------------------------TTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred             cCHhHc--------------------------------------------cCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence            655322                                            145678889999999998777789999999


Q ss_pred             cEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCC
Q 046844          812 YALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASL  856 (967)
Q Consensus       812 ~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l  856 (967)
                      +.|+|++|.+++..+.. .-...++.++.+.+.+.+..|..+.+.
T Consensus       228 ~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~  271 (285)
T 1ozn_A          228 QYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGR  271 (285)
T ss_dssp             CEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTC
T ss_pred             CEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCc
Confidence            99999999998755532 222345666788899999999887653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=3.9e-27  Score=281.69  Aligned_cols=408  Identities=13%  Similarity=0.073  Sum_probs=242.7

Q ss_pred             ccccCCCCCCEEeCCCCCCC---ccCChhcc------------CCCCCCEEeCCCCCCCccccccccccHHHHhcC-CCC
Q 046844           86 SRLGNLTNLTYLNLSQGGFA---GEIPTEIS------------SLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQN-LTE  149 (967)
Q Consensus        86 ~~l~~l~~L~~L~Ls~~~~~---~~lp~~l~------------~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~-l~~  149 (967)
                      ..+.++++|++|++++|...   +.+|..++            .+++|++|++++|. ++       ...+..+.. +++
T Consensus        67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~-------~~~~~~l~~~~~~  138 (592)
T 3ogk_B           67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VS-------DLDLDRLAKARAD  138 (592)
T ss_dssp             HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CC-------HHHHHHHHHHHGG
T ss_pred             HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ec-------HHHHHHHHHhccc
Confidence            44556677777777665321   22332222            45566666666541 11       011111222 222


Q ss_pred             -CCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCC----CcccccCCCCCCEEEccCCCCC----Ccchhhhc
Q 046844          150 -LTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGP----INHYLAKSRSLSVIRLHYNYGL----SSGTEFLA  220 (967)
Q Consensus       150 -L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~----~~~~l~~l~~L~~L~L~~n~~~----~~~~~~l~  220 (967)
                       |++|+++++.-. ....+......+++|++|+|++|.+++.    ++..+..+++|++|++++|.+.    ..++..+.
T Consensus       139 ~L~~L~L~~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~  217 (592)
T 3ogk_B          139 DLETLKLDKCSGF-TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR  217 (592)
T ss_dssp             GCCEEEEESCEEE-EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred             cCcEEECcCCCCc-CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence             556655555310 1111222223455566666655554443    2223344555555555555554    12233334


Q ss_pred             CCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEE
Q 046844          221 HLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRV  300 (967)
Q Consensus       221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  300 (967)
                      ++++|++|++++|.+.+ ++..+..+++|++|+++......                     -....+..+..+++|+.|
T Consensus       218 ~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~---------------------~~~~~~~~l~~~~~L~~L  275 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDI---------------------GMPEKYMNLVFPRKLCRL  275 (592)
T ss_dssp             HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCT---------------------TCTTSSSCCCCCTTCCEE
T ss_pred             hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccccccccc---------------------chHHHHHHhhcccccccc
Confidence            45555555555555543 44445555555555554321100                     002334567788999999


Q ss_pred             EccCCCCCCCCCccccCCCCCcEEEccCccccccCc-c-ccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCC--
Q 046844          301 EVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP-S-LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGH--  376 (967)
Q Consensus       301 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~--  376 (967)
                      +++++.. ..+|..+..+++|++|++++|.+++... . ...+++|++|+++ +.+.+.........+++|++|++++  
T Consensus       276 ~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~  353 (592)
T 3ogk_B          276 GLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGA  353 (592)
T ss_dssp             EETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCC
T ss_pred             Cccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCc
Confidence            9998643 4677888899999999999999754332 2 3456699999999 4444333334357789999999994  


Q ss_pred             ---------CcCCCCcC-hhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEee----CCcCCCC-----CChhhh
Q 046844          377 ---------NSLSGSIP-RSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLS----GNRLEGP-----VPISIF  437 (967)
Q Consensus       377 ---------n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~----~n~l~~~-----i~~~~~  437 (967)
                               +.+++... .....+++|++|+++.|.+++.........+++|+.|+++    .|.+++.     ++ .++
T Consensus       354 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~-~~~  432 (592)
T 3ogk_B          354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR-SLL  432 (592)
T ss_dssp             CSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH-HHH
T ss_pred             cccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH-HHH
Confidence                     55654322 2345689999999988888865544433457899999997    5567642     22 234


Q ss_pred             ccCCCCCEEECCCCc--ccccccCCCCCccCCC-CCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCc
Q 046844          438 FELRNLYTLDLSSNK--FSRLKLASSKPRAIPI-LKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSL  514 (967)
Q Consensus       438 ~~l~~L~~L~Ls~n~--l~~l~~~~~~~~~ip~-l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l  514 (967)
                      .++++|+.|+++.|.  ++...        +.. ...+++|++|++++|++++.....+. ...++|++|++++|.++..
T Consensus       433 ~~~~~L~~L~L~~~~~~l~~~~--------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~L~~L~l~~n~l~~~  503 (592)
T 3ogk_B          433 IGCKKLRRFAFYLRQGGLTDLG--------LSYIGQYSPNVRWMLLGYVGESDEGLMEFS-RGCPNLQKLEMRGCCFSER  503 (592)
T ss_dssp             HHCTTCCEEEEECCGGGCCHHH--------HHHHHHSCTTCCEEEECSCCSSHHHHHHHH-TCCTTCCEEEEESCCCBHH
T ss_pred             HhCCCCCEEEEecCCCCccHHH--------HHHHHHhCccceEeeccCCCCCHHHHHHHH-hcCcccCeeeccCCCCcHH
Confidence            779999999997543  43211        111 23478899999999998753222221 2346899999999997542


Q ss_pred             --CCC-CCCCCccEEeCCCCCCCCC
Q 046844          515 --QEP-YSISGIRFLDLHSNQLRGN  536 (967)
Q Consensus       515 --~~~-~~~~~L~~L~Ls~n~l~~~  536 (967)
                        +.. ..+++|+.|++++|++++.
T Consensus       504 ~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          504 AIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHHHhcCccCeeECcCCcCCHH
Confidence              222 2378999999999999865

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=9.3e-26  Score=260.51  Aligned_cols=82  Identities=21%  Similarity=0.174  Sum_probs=38.4

Q ss_pred             CcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEc
Q 046844          785 NIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNL  864 (967)
Q Consensus       785 ~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~l  864 (967)
                      +.|+.|+|++|.+++..+  +..++.|+.|+|++|.+++.+| .++.+++|+.|||++|.|++ +|..+..++.|+.|++
T Consensus       169 ~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l  244 (487)
T 3oja_A          169 DTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL  244 (487)
T ss_dssp             TTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred             CcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence            344444455554444311  2234455555555555554322 24455555555555555553 3444444555555555


Q ss_pred             cCCccc
Q 046844          865 SYNNLV  870 (967)
Q Consensus       865 s~N~l~  870 (967)
                      ++|.+.
T Consensus       245 ~~N~l~  250 (487)
T 3oja_A          245 RGNGFH  250 (487)
T ss_dssp             TTCCBC
T ss_pred             CCCCCc
Confidence            555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2.8e-24  Score=229.79  Aligned_cols=228  Identities=22%  Similarity=0.198  Sum_probs=187.4

Q ss_pred             EEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECC
Q 046844          596 VLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLR  675 (967)
Q Consensus       596 ~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  675 (967)
                      ..+.++..+. .+|..+.    ++|++|++++|++++ ++...|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus        11 ~~~c~~~~l~-~ip~~l~----~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~   84 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP----FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT   84 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC----TTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             eEEecCCCcc-ccCCCCC----CCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECC
Confidence            3555566665 6676552    278899999999884 444348888999999999999988888888999999999999


Q ss_pred             CCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcC-cCcHHHHHHHhhcccCCCccccc
Q 046844          676 SNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSG-RLSQKWLLTMMVAETKSGSEVNH  754 (967)
Q Consensus       676 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g-~~p~~~~~~~~~~~~~~~~~~~~  754 (967)
                      +|++++..+..|.++++|++|++++|++++..  +..+..+++|+.|++++|++++ .+|..+                 
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~l~~~~-----------------  145 (276)
T 2z62_A           85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYF-----------------  145 (276)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSCCCCST--TCCCTTCTTCCEEECCSSCCCCCCCCGGG-----------------
T ss_pred             CCccCccChhhhcCCccccEEECCCCCccccC--chhcccCCCCCEEECcCCccceecCchhh-----------------
Confidence            99999888888999999999999999998775  5578889999999999999876 345322                 


Q ss_pred             ccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCc----EEECCCCCCcccCCcccc
Q 046844          755 LGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLY----ALNMSHNALTGSIPSSFG  830 (967)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~----~L~Ls~N~l~g~ip~~~~  830 (967)
                                                 ..++.|+.|++++|++++..+..++.++.|+    .|++++|.+++..|..+.
T Consensus       146 ---------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~  198 (276)
T 2z62_A          146 ---------------------------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK  198 (276)
T ss_dssp             ---------------------------GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC
T ss_pred             ---------------------------ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC
Confidence                                       2467789999999999988888888887777    899999999976666655


Q ss_pred             CCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC
Q 046844          831 NLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS  876 (967)
Q Consensus       831 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~  876 (967)
                      . .+|+.|||++|++++..+..+.+++.|+.|++++|++++..|.-
T Consensus       199 ~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          199 E-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             S-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             C-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence            4 48999999999999888788899999999999999999988754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=2.6e-25  Score=242.62  Aligned_cols=240  Identities=23%  Similarity=0.188  Sum_probs=203.7

Q ss_pred             eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCC
Q 046844          573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG  652 (967)
Q Consensus       573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~  652 (967)
                      .+++.+.+....+..+..+++|++|++++|++++..|..+....  +|++|+|++|.+++..+   |..+++|++|++++
T Consensus        15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNVLYETLD---LESLSTLRTLDLNN   89 (317)
T ss_dssp             ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT--TCCEEECTTSCCEEEEE---ETTCTTCCEEECCS
T ss_pred             eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCC--cCCEEECCCCcCCcchh---hhhcCCCCEEECcC
Confidence            67777777766666667788999999999999977667777766  99999999999996655   88899999999999


Q ss_pred             CccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCc
Q 046844          653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGR  732 (967)
Q Consensus       653 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~  732 (967)
                      |++++..     .+++|++|++++|++++..+..   +++|+.|++++|++++..  +..+..+++|+.||+++|++++.
T Consensus        90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           90 NYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             SEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGG--GBCTGGGSSEEEEECTTSCCCEE
T ss_pred             Ccccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCcc--chhhhccCCCCEEECCCCCCCcc
Confidence            9998543     3489999999999999877654   688999999999999876  77888999999999999999876


Q ss_pred             CcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCc
Q 046844          733 LSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLY  812 (967)
Q Consensus       733 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~  812 (967)
                      .|..+.                                           ..++.|+.|++++|++++. |. ...+++|+
T Consensus       160 ~~~~~~-------------------------------------------~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~  194 (317)
T 3o53_A          160 NFAELA-------------------------------------------ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLK  194 (317)
T ss_dssp             EGGGGG-------------------------------------------GGTTTCCEEECTTSCCCEE-EC-CCCCTTCC
T ss_pred             cHHHHh-------------------------------------------hccCcCCEEECCCCcCccc-cc-ccccccCC
Confidence            553221                                           1357799999999999876 43 44599999


Q ss_pred             EEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccc-cCCC
Q 046844          813 ALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV-GKIP  874 (967)
Q Consensus       813 ~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~-g~ip  874 (967)
                      .|+|++|++++. |..++.+++|+.|||++|++++ +|..+..++.|+.|++++|+++ +.+|
T Consensus       195 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~  255 (317)
T 3o53_A          195 TLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (317)
T ss_dssp             EEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred             EEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHH
Confidence            999999999975 5559999999999999999994 7888999999999999999998 5555

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=3.2e-25  Score=256.08  Aligned_cols=245  Identities=20%  Similarity=0.173  Sum_probs=208.9

Q ss_pred             CCCcchhcccc---ccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcc
Q 046844          556 SIPADIGNFMS---ETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNG  632 (967)
Q Consensus       556 ~i~~~~~~~~~---~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~  632 (967)
                      .+|..+.....   .++.  |++++|.+++..|..+..+++|++|+|++|.+++..|  +..+.  +|++|+|++|.+++
T Consensus        21 ~l~~~l~~l~~~~~~L~~--L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~--~L~~L~Ls~N~l~~   94 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKE--LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS--TLRTLDLNNNYVQE   94 (487)
T ss_dssp             THHHHHHTTSTTGGGCCE--EECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT--TCCEEECCSSEEEE
T ss_pred             hhHHHHHHhcccCCCccE--EEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC--CCCEEEecCCcCCC
Confidence            44554444332   4555  9999999999989999999999999999999987655  55555  99999999999984


Q ss_pred             cCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCC
Q 046844          633 TLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRN  712 (967)
Q Consensus       633 ~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~  712 (967)
                       +|     ..++|++|++++|.+++..+..   +++|+.|++++|.+++..|..++.+++|+.|+|++|.+++.+  |..
T Consensus        95 -l~-----~~~~L~~L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~  163 (487)
T 3oja_A           95 -LL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--FAE  163 (487)
T ss_dssp             -EE-----ECTTCCEEECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE--GGG
T ss_pred             -CC-----CCCCcCEEECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC--hHH
Confidence             33     2378999999999999876654   578999999999999999999999999999999999999987  777


Q ss_pred             CC-CCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEE
Q 046844          713 KV-SWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSID  791 (967)
Q Consensus       713 ~~-~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  791 (967)
                      +. .+++|+.|+|++|.+++..+.                                              ..++.|+.||
T Consensus       164 l~~~l~~L~~L~Ls~N~l~~~~~~----------------------------------------------~~l~~L~~L~  197 (487)
T 3oja_A          164 LAASSDTLEHLNLQYNFIYDVKGQ----------------------------------------------VVFAKLKTLD  197 (487)
T ss_dssp             GGGGTTTCCEEECTTSCCCEEECC----------------------------------------------CCCTTCCEEE
T ss_pred             HhhhCCcccEEecCCCcccccccc----------------------------------------------ccCCCCCEEE
Confidence            76 799999999999999754220                                              1367899999


Q ss_pred             CCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCcccc-ccCCccccCCCCCCeEEcc
Q 046844          792 FSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS-GKIPAQLASLNFLSVLNLS  865 (967)
Q Consensus       792 Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~l~ls  865 (967)
                      |++|++++..| .++.++.|+.|||++|.+++ +|..++.+++|+.||+++|.+. +.+|..+..++.|+.++++
T Consensus       198 Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          198 LSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            99999998555 49999999999999999996 7888999999999999999998 8888999999888888876

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.1e-22  Score=216.23  Aligned_cols=92  Identities=18%  Similarity=0.263  Sum_probs=62.9

Q ss_pred             CCCcccceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCc
Q 046844           27 SDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAG  106 (967)
Q Consensus        27 ~~~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~  106 (967)
                      .++|+|.|+.|...+.++.++++++.++. +  |..+.  ++|++|+|++|.+.+. .+..+.++++|++|++++|.+. 
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-i--p~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~-   74 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-I--PSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ-   74 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECTTSCCSS-C--CSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCS-
T ss_pred             CccCCCCCCCCEeCCCCCEEEccCCCCCc-c--CCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccC-
Confidence            58999999999655567788888887763 4  33343  5778888888887743 3346777888888888877776 


Q ss_pred             cCCh-hccCCCCCCEEeCCC
Q 046844          107 EIPT-EISSLTRLVTLDLSG  125 (967)
Q Consensus       107 ~lp~-~l~~l~~L~~L~Ls~  125 (967)
                      .+|. .+.++++|++|++++
T Consensus        75 ~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           75 TLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             CCCTTTTSSCTTCCEEECCS
T ss_pred             eeChhhhcCCCCCCEEECCC
Confidence            3443 335555555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=9.1e-23  Score=216.98  Aligned_cols=206  Identities=23%  Similarity=0.249  Sum_probs=149.3

Q ss_pred             CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844          593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL  672 (967)
Q Consensus       593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  672 (967)
                      +.+.+++++++++ .+|..+.    ++++.|++++|+++ .++...|..+++|++|++++|+++...+..|..+++|++|
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~----~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP----ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL   90 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC----TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred             CCCEEEccCCCCC-ccCCCCC----CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence            4677888888877 5666542    26777888888777 4554447777777777777777776666666777777777


Q ss_pred             ECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccc
Q 046844          673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEV  752 (967)
Q Consensus       673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~  752 (967)
                      ++++|++++..+..|.++++|++|++++|++++..  +..+..+++                                  
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~----------------------------------  134 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP--PRVFDSLTK----------------------------------  134 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC--TTTTTTCTT----------------------------------
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeC--HHHhCcCcC----------------------------------
Confidence            77777777766666677777777777777776554  344444444                                  


Q ss_pred             ccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCC
Q 046844          753 NHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNL  832 (967)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l  832 (967)
                                                        |+.|++++|++++..+..|+.+++|+.|+|++|++++..|..|.++
T Consensus       135 ----------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  180 (270)
T 2o6q_A          135 ----------------------------------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL  180 (270)
T ss_dssp             ----------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             ----------------------------------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence                                              4555555555555555557788888888888888887777778888


Q ss_pred             CCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCC
Q 046844          833 KEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP  874 (967)
Q Consensus       833 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip  874 (967)
                      ++|+.|||++|++++..+..+..++.|+.|++++|.+....+
T Consensus       181 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            888888888888887777778888888888888888877654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=1.6e-26  Score=276.57  Aligned_cols=435  Identities=15%  Similarity=0.105  Sum_probs=300.9

Q ss_pred             CCcccceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCC-CC-CC------------ccccCCCC
Q 046844           28 DCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKG-FQ-IP------------SRLGNLTN   93 (967)
Q Consensus        28 ~~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~-lp------------~~l~~l~~   93 (967)
                      -|++|.++..   ...+.+++......  . +...+.++++|++|+|+++.... .. .|            .....+++
T Consensus        33 vck~W~~~~~---~~~~~l~~~~~~~~--~-~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~  106 (594)
T 2p1m_B           33 VCKSWYEIER---WCRRKVFIGNCYAV--S-PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW  106 (594)
T ss_dssp             SCHHHHHHHH---HHCCEEEESSTTSS--C-HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred             HHHHHHHhhh---hhceEEeecccccc--C-HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCC
Confidence            4668999822   23345566543321  1 12345688999999999875221 10 11            22346889


Q ss_pred             CCEEeCCCCCCCccCChhcc-CCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHHh-
Q 046844           94 LTYLNLSQGGFAGEIPTEIS-SLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKAL-  171 (967)
Q Consensus        94 L~~L~Ls~~~~~~~lp~~l~-~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l-  171 (967)
                      |++|+|++|.+.+..+..+. .+++|++|++++|..++      ...++..+.++++|++|++++|.+++.+..+...+ 
T Consensus       107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~------~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS------TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE------HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC------HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            99999999999887777776 79999999999874332      23366667789999999999999877666666555 


Q ss_pred             cCCCCccEEEccCCC--CCCC-CcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCC------Cccchh
Q 046844          172 SFLPNLQVLSLSGCD--LSGP-INHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQ------GKFPEK  242 (967)
Q Consensus       172 ~~l~~L~~L~Ls~~~--l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~------~~~~~~  242 (967)
                      ..+++|++|++++|.  +... +...+..+++|++|++++|...+.++..+..+++|++|+++.+...      ..++..
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence            478999999999997  2211 1222356799999999999554557888889999999998766421      124457


Q ss_pred             ccCCCCCCEE-eccCCCCCCCCCCCC-CCCCCCCEEEccCCCCCCCcc-ccccCCCCCCEEEccCCCCCCC-CCccccCC
Q 046844          243 ILHVPTLETL-DLSINQLLQGSLPNF-PKNSSLRDLILSHTGLSGTLP-DSIGNLENLTRVEVSSCNFTGP-IPPSMANL  318 (967)
Q Consensus       243 l~~l~~L~~L-~L~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l  318 (967)
                      +.++++|+.| .+....  ...++.+ ..+++|++|++++|.+++... ..+..+++|++|++++| +... ++.....+
T Consensus       261 l~~~~~L~~Ls~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~  337 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAV--PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC  337 (594)
T ss_dssp             HHTCTTCCEEECCBTCC--GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred             HhcCCCcccccCCcccc--hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence            7899999999 444322  1222222 247899999999999765432 33568999999999988 4321 22223358


Q ss_pred             CCCcEEEccC---------ccccccC-cccc-ccCcccEEECCCCCCCCCCChhhhhcccCccEEEcC--C----CcCCC
Q 046844          319 TQLFHMDFSS---------NHFFGPI-PSLH-KSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLG--H----NSLSG  381 (967)
Q Consensus       319 ~~L~~L~L~~---------n~l~~~~-~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~--~----n~l~~  381 (967)
                      ++|++|++.+         +.+++.. .... .+++|++|.++.+.+++.........+++|+.|+++  +    +.+++
T Consensus       338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~  417 (594)
T 2p1m_B          338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL  417 (594)
T ss_dssp             TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred             CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence            8999999944         3333211 1112 356999999988988865555534468999999999  4    45552


Q ss_pred             C-----cChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCccccc
Q 046844          382 S-----IPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRL  456 (967)
Q Consensus       382 ~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l  456 (967)
                      .     ++..+..+++|+.|++++ .+++.........+++|+.|++++|.+++.....+...+++|++|++++|.++..
T Consensus       418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~  496 (594)
T 2p1m_B          418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK  496 (594)
T ss_dssp             CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred             CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence            2     122366789999999977 5554333322224788999999999987655555557799999999999998532


Q ss_pred             ccCCCCCccCCC-CCCCCCccEEECcCCccC
Q 046844          457 KLASSKPRAIPI-LKNQSQLSVLDISDNQIS  486 (967)
Q Consensus       457 ~~~~~~~~~ip~-l~~~~~L~~L~Ls~n~i~  486 (967)
                      ..        .. ...+++|++|++++|.++
T Consensus       497 ~~--------~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          497 AL--------LANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HH--------HHTGGGGGGSSEEEEESSCCB
T ss_pred             HH--------HHHHHhCCCCCEEeeeCCCCC
Confidence            21        11 455789999999999885

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.5e-23  Score=221.51  Aligned_cols=204  Identities=20%  Similarity=0.190  Sum_probs=129.3

Q ss_pred             hcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCC
Q 046844          589 CKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM  668 (967)
Q Consensus       589 ~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  668 (967)
                      ..+++|+.|++++|.++ .++ .+..+.  +|++|++++|.+++ ++ . +..+++|++|++++|++++..+..|..+++
T Consensus        38 ~~l~~L~~L~l~~~~i~-~~~-~l~~l~--~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  110 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIK-SVQ-GIQYLP--NVRYLALGGNKLHD-IS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTN  110 (272)
T ss_dssp             HHHTTCCEEECTTSCCC-CCT-TGGGCT--TCCEEECTTSCCCC-CG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             ccccceeeeeeCCCCcc-ccc-ccccCC--CCcEEECCCCCCCC-ch-h-hcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence            34556666666666654 222 233333  55555555555542 22 1 444555555555555555444444555555


Q ss_pred             CCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCC
Q 046844          669 LQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKS  748 (967)
Q Consensus       669 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~  748 (967)
                      |++|++++|++++..+..|.++++|++|++++|++++..  +..+.                                  
T Consensus       111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~----------------------------------  154 (272)
T 3rfs_A          111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP--KGVFD----------------------------------  154 (272)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTT----------------------------------
T ss_pred             CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC--HHHhc----------------------------------
Confidence            555555555555544444444555555555555444332  22222                                  


Q ss_pred             CcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCcc
Q 046844          749 GSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSS  828 (967)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~  828 (967)
                                                        .++.|+.|++++|++++..|..++.+++|+.|+|++|++++..|..
T Consensus       155 ----------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (272)
T 3rfs_A          155 ----------------------------------KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV  200 (272)
T ss_dssp             ----------------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             ----------------------------------cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH
Confidence                                              3455667777777777777777888999999999999999988888


Q ss_pred             ccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC
Q 046844          829 FGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS  876 (967)
Q Consensus       829 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~  876 (967)
                      ++.+++|+.|++++|.+.|..|       .|+.++++.|+++|.||..
T Consensus       201 ~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          201 FDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred             HhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence            9999999999999999887654       5888999999999999964

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=3e-23  Score=220.91  Aligned_cols=227  Identities=21%  Similarity=0.217  Sum_probs=181.2

Q ss_pred             CCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccE
Q 046844          543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEV  622 (967)
Q Consensus       543 ~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~  622 (967)
                      .+..+++..+.+..+..  ...+..++.  +++++|.+...  ..+..+++|++|++++|.+++ ++ .+..+.  +|++
T Consensus        20 ~l~~l~l~~~~~~~~~~--~~~l~~L~~--L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~--~L~~   89 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVT--QNELNSIDQ--IIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS-ALKELT--NLTY   89 (272)
T ss_dssp             HHHHHHHTCSCTTSEEC--HHHHTTCCE--EECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG-GGTTCT--TCCE
T ss_pred             HHHHHHhcCcccccccc--cccccceee--eeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch-hhcCCC--CCCE
Confidence            34456666776664432  122445555  99999998753  358889999999999999985 43 555555  9999


Q ss_pred             EECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCc
Q 046844          623 LNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNN  702 (967)
Q Consensus       623 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  702 (967)
                      |++++|.+++ ++...|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+.++++|+.|++++|+
T Consensus        90 L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  168 (272)
T 3rfs_A           90 LILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ  168 (272)
T ss_dssp             EECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccCc-cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC
Confidence            9999999995 555548999999999999999999888889999999999999999999888889999999999999999


Q ss_pred             cceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecc
Q 046844          703 FSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLK  782 (967)
Q Consensus       703 l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  782 (967)
                      +++..  +..+..+++|+                                                              
T Consensus       169 l~~~~--~~~~~~l~~L~--------------------------------------------------------------  184 (272)
T 3rfs_A          169 LQSLP--EGVFDKLTQLK--------------------------------------------------------------  184 (272)
T ss_dssp             CCCCC--TTTTTTCTTCC--------------------------------------------------------------
T ss_pred             cCccC--HHHhcCCccCC--------------------------------------------------------------
Confidence            98764  44445555544                                                              


Q ss_pred             cCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCC
Q 046844          783 VPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLN  857 (967)
Q Consensus       783 ~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  857 (967)
                            .|++++|++++..|..++.+++|+.|+|++|.++|..|       .|+.|+++.|+++|.+|..++.+.
T Consensus       185 ------~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          185 ------DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             ------EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             ------EEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCcccccC
Confidence                  45555555556666678889999999999999987654       688999999999999999887654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=1.2e-22  Score=217.03  Aligned_cols=212  Identities=21%  Similarity=0.219  Sum_probs=130.2

Q ss_pred             CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844          593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL  672 (967)
Q Consensus       593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  672 (967)
                      +|++|++++|++++..+..+....  +|++|++++|+++ .++...|..+++|++|++++|++++..+..|.++++|++|
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCT--TCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CccEEECCCCcccccCHhHhcccc--CCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            455555555555543333444333  5555555555555 2333225555666666666666665555556666666666


Q ss_pred             ECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccc
Q 046844          673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEV  752 (967)
Q Consensus       673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~  752 (967)
                      ++++|++++..+..+.++++|++|++++|++++. ..|..+..+++|+.|++++|++++..+..+. .+           
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l-----------  172 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VL-----------  172 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECCSSCCCEECGGGGH-HH-----------
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCcccee-cCchhhccCCCCCEEECCCCCCCcCCHHHhh-hh-----------
Confidence            6666666655555556666666666666666542 1155566666666666666666544332211 00           


Q ss_pred             ccccccCCCCceeeEEEEEEEccceeeecccCCcce-EEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccC
Q 046844          753 NHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFT-SIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGN  831 (967)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  831 (967)
                                                   ..++.+. .+++++|++++..|..+. ..+|+.|+|++|++++..+..|++
T Consensus       173 -----------------------------~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~  222 (276)
T 2z62_A          173 -----------------------------HQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDR  222 (276)
T ss_dssp             -----------------------------HTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTT
T ss_pred             -----------------------------hhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcc
Confidence                                         0122232 688999998876665554 447999999999999877777899


Q ss_pred             CCCCCeEeCcCccccccCC
Q 046844          832 LKEIESLDLSMNNLSGKIP  850 (967)
Q Consensus       832 l~~L~~LdLs~N~l~g~ip  850 (967)
                      +++|+.|+|++|.+++..|
T Consensus       223 l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          223 LTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCSCCEEECCSSCBCCCTT
T ss_pred             cccccEEEccCCcccccCC
Confidence            9999999999999998654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=1.2e-23  Score=228.66  Aligned_cols=232  Identities=19%  Similarity=0.181  Sum_probs=176.7

Q ss_pred             CCCcEEEcccCcCCCC-CCcc--cccCCCCCccEEECCCCcCcccCCCCCC-CCCCcccEEeCCCCccCCCCc----ccc
Q 046844          592 TNFQVLDLSNNNLSGT-IPAC--LITKSSSTLEVLNLGRNNLNGTLSDTIF-PGDCGLQILDLSGNQLQGVVP----KSL  663 (967)
Q Consensus       592 ~~L~~L~Ls~N~l~~~-~p~~--~~~~~~~~L~~L~Ls~N~l~~~ip~~~~-~~l~~L~~L~L~~N~l~~~~p----~~~  663 (967)
                      ..++.+.+.++.++.. +...  .....  +|++|++++|.+++.+|...+ ..+++|++|+|++|++++..+    ..+
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYS--RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHS--CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccC--ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            3466677766665421 1100  11122  688888888888877777733 778888999999998887655    345


Q ss_pred             cCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCcccee--cCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHH
Q 046844          664 ANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGH--ISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTM  741 (967)
Q Consensus       664 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~  741 (967)
                      ..+++|++|++++|++++..|..|+++++|++|+|++|++.+.  +..+..+..+++|++|++++|+++. +|.... . 
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~-~-  218 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA-A-  218 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH-H-
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH-H-
Confidence            5788999999999999988888899999999999999988663  2112344688999999999999963 222110 0 


Q ss_pred             hhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCC---CCCcEEECCC
Q 046844          742 MVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRF---RSLYALNMSH  818 (967)
Q Consensus       742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l---~~L~~L~Ls~  818 (967)
                                                            ....++.|+.|||++|++++.+|..++.+   ++|++|+|++
T Consensus       219 --------------------------------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~  260 (310)
T 4glp_A          219 --------------------------------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF  260 (310)
T ss_dssp             --------------------------------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred             --------------------------------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence                                                  00135678999999999999999888887   6999999999


Q ss_pred             CCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCcccc
Q 046844          819 NALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG  871 (967)
Q Consensus       819 N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g  871 (967)
                      |+++ .+|..+.  ++|+.|||++|+|++. |. +..++.|+.|++++|+++.
T Consensus       261 N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          261 AGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            9999 7898885  8999999999999974 33 6788999999999999964

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=6.8e-22  Score=211.93  Aligned_cols=199  Identities=21%  Similarity=0.216  Sum_probs=125.6

Q ss_pred             CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEc
Q 046844          619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL  698 (967)
Q Consensus       619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  698 (967)
                      +++.+++++|.++ .+|.. +.  +++++|+|++|++++..|..|..+++|+.|++++|.+++..+.  ..+++|++|++
T Consensus        11 ~l~~l~~~~~~l~-~ip~~-~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~L   84 (290)
T 1p9a_G           11 SHLEVNCDKRNLT-ALPPD-LP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDL   84 (290)
T ss_dssp             TCCEEECTTSCCS-SCCSC-CC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEEC
T ss_pred             CccEEECCCCCCC-cCCCC-CC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEEC
Confidence            4555555555554 44444 21  3455555555555555555555666666666666666554332  45566666666


Q ss_pred             cCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEcccee
Q 046844          699 RSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEI  778 (967)
Q Consensus       699 ~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  778 (967)
                      ++|+++..   |..+..+++|+.|++++|++++..|..+                                         
T Consensus        85 s~N~l~~l---~~~~~~l~~L~~L~l~~N~l~~l~~~~~-----------------------------------------  120 (290)
T 1p9a_G           85 SHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGAL-----------------------------------------  120 (290)
T ss_dssp             CSSCCSSC---CCCTTTCTTCCEEECCSSCCCCCCSSTT-----------------------------------------
T ss_pred             CCCcCCcC---chhhccCCCCCEEECCCCcCcccCHHHH-----------------------------------------
Confidence            66666532   5555566666666666666654332111                                         


Q ss_pred             eecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCC
Q 046844          779 KLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNF  858 (967)
Q Consensus       779 ~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~  858 (967)
                         ..++.|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+|+ .+|..+..+..
T Consensus       121 ---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~  196 (290)
T 1p9a_G          121 ---RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL  196 (290)
T ss_dssp             ---TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCC
T ss_pred             ---cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhccccc
Confidence               13455677777777777666666777888888888888888655566777888888888888887 56777777778


Q ss_pred             CCeEEccCCcccc
Q 046844          859 LSVLNLSYNNLVG  871 (967)
Q Consensus       859 L~~l~ls~N~l~g  871 (967)
                      |+.+++++|.+..
T Consensus       197 L~~l~L~~Np~~C  209 (290)
T 1p9a_G          197 LPFAFLHGNPWLC  209 (290)
T ss_dssp             CSEEECCSCCBCC
T ss_pred             CCeEEeCCCCccC
Confidence            8888888887754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=5.7e-22  Score=208.33  Aligned_cols=182  Identities=18%  Similarity=0.187  Sum_probs=115.7

Q ss_pred             CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEc
Q 046844          619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL  698 (967)
Q Consensus       619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  698 (967)
                      ..++++++++.++ .+|.. +.  ++++.|+|++|++++..+..|.++++|++|++++|++++..|..|.++++|++|+|
T Consensus        15 ~~~~l~~~~~~l~-~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4455566666655 55554 22  35666666666666666666666666666666666666666666666666666666


Q ss_pred             cCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEcccee
Q 046844          699 RSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEI  778 (967)
Q Consensus       699 ~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  778 (967)
                      ++|++++..  +..+..+++|+.                                                         
T Consensus        91 ~~n~l~~~~--~~~~~~l~~L~~---------------------------------------------------------  111 (251)
T 3m19_A           91 ANNQLASLP--LGVFDHLTQLDK---------------------------------------------------------  111 (251)
T ss_dssp             TTSCCCCCC--TTTTTTCTTCCE---------------------------------------------------------
T ss_pred             CCCcccccC--hhHhcccCCCCE---------------------------------------------------------
Confidence            666665443  333344444443                                                         


Q ss_pred             eecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCC
Q 046844          779 KLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNF  858 (967)
Q Consensus       779 ~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~  858 (967)
                                 |+|++|++++..|..|+.+++|+.|+|++|++++..|..|+.+++|+.|||++|++++..|..+..++.
T Consensus       112 -----------L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  180 (251)
T 3m19_A          112 -----------LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK  180 (251)
T ss_dssp             -----------EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             -----------EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence                       444444444444445666777777777777777666667777777888888888777777777777777


Q ss_pred             CCeEEccCCccccCCC
Q 046844          859 LSVLNLSYNNLVGKIP  874 (967)
Q Consensus       859 L~~l~ls~N~l~g~ip  874 (967)
                      |+.|++++|++++..+
T Consensus       181 L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          181 LQTITLFGNQFDCSRC  196 (251)
T ss_dssp             CCEEECCSCCBCTTST
T ss_pred             CCEEEeeCCceeCCcc
Confidence            8888888888777644

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=2.8e-21  Score=207.13  Aligned_cols=212  Identities=21%  Similarity=0.208  Sum_probs=168.2

Q ss_pred             CCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcc
Q 046844          521 SGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLS  600 (967)
Q Consensus       521 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls  600 (967)
                      ++++.++++++.++..++..++.+++|++++|.++.++......+..++.  |++++|.+++..+.  ..+++|++|+++
T Consensus        10 ~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~--L~L~~n~l~~~~~~--~~l~~L~~L~Ls   85 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ--LNLDRAELTKLQVD--GTLPVLGTLDLS   85 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCE--EECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred             CCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCE--EECCCCccCcccCC--CCCCcCCEEECC
Confidence            34555555555555444444455666666666666555444444555555  77777777765443  578899999999


Q ss_pred             cCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccc
Q 046844          601 NNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYIS  680 (967)
Q Consensus       601 ~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  680 (967)
                      +|+++ .+|..+....  +|++|++++|+++ .+|...|..+++|++|+|++|++++..+..|..+++|+.|++++|+++
T Consensus        86 ~N~l~-~l~~~~~~l~--~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           86 HNQLQ-SLPLLGQTLP--ALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             SSCCS-SCCCCTTTCT--TCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCcCC-cCchhhccCC--CCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            99998 7888776665  9999999999999 566555999999999999999999888888999999999999999999


Q ss_pred             cccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhh
Q 046844          681 DNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMV  743 (967)
Q Consensus       681 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~  743 (967)
                      +..+..|.++++|+.|+|++|+++..   |..+...++|+.+++++|++.+.+...++..++.
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~~i---p~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~  221 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLYTI---PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ  221 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCCcc---ChhhcccccCCeEEeCCCCccCcCccHHHHHHHH
Confidence            98888889999999999999999954   8888889999999999999999887666655543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=1e-24  Score=260.75  Aligned_cols=427  Identities=16%  Similarity=0.125  Sum_probs=288.4

Q ss_pred             CcEEEEECCCCCcccccCCC-C-----------C-CcCCCCCCeeeCCCCCCCCCCCCcccc-CCCCCCEEeCCCC-CCC
Q 046844           41 GHVIGLDLSWEPIIGGLENA-T-----------G-LFDLQYLQSLNLGFTLFKGFQIPSRLG-NLTNLTYLNLSQG-GFA  105 (967)
Q Consensus        41 ~~v~~L~L~~~~l~g~~~~~-~-----------~-l~~l~~L~~L~Ls~n~~~~~~lp~~l~-~l~~L~~L~Ls~~-~~~  105 (967)
                      .++++|+++++.....+... .           . ...+++|++|+|+++.+.+. .+..+. .+++|++|+|++| .+.
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCC
Confidence            57889999887543322111 0           1 23688999999999988765 444554 6899999999999 454


Q ss_pred             cc-CChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchh-HHHHhcCCCCccEEEcc
Q 046844          106 GE-IPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTE-WCKALSFLPNLQVLSLS  183 (967)
Q Consensus       106 ~~-lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~l~~L~~L~Ls  183 (967)
                      +. ++..+.++++|++|++++|. ++.   .....++.....+++|++|+++++. ...... +...+..+++|++|+++
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~-i~~---~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESD-VDD---VSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCE-EEC---CCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCc-cCC---cchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecC
Confidence            32 45555689999999999975 321   1122234445688999999999986 222222 23333568999999999


Q ss_pred             CCCCCCCCcccccCCCCCCEEEccCCCCC------CcchhhhcCCCCCCEE-eccCCCCCCccchhccCCCCCCEEeccC
Q 046844          184 GCDLSGPINHYLAKSRSLSVIRLHYNYGL------SSGTEFLAHLTNLKAL-DLSECGLQGKFPEKILHVPTLETLDLSI  256 (967)
Q Consensus       184 ~~~l~~~~~~~l~~l~~L~~L~L~~n~~~------~~~~~~l~~l~~L~~L-~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  256 (967)
                      +|.....++..+..+++|+.|+++.+...      ..++..+.++++|+.| .+.+... +.++..+..+++|++|++++
T Consensus       220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~  298 (594)
T 2p1m_B          220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY  298 (594)
T ss_dssp             TTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred             CCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence            98333336777889999999998766421      1234567899999999 4444332 34555556789999999999


Q ss_pred             CCCCCCCCCC-CCCCCCCCEEEccCCCCCCC-ccccccCCCCCCEEEccC---------CCCCCCCCccc-cCCCCCcEE
Q 046844          257 NQLLQGSLPN-FPKNSSLRDLILSHTGLSGT-LPDSIGNLENLTRVEVSS---------CNFTGPIPPSM-ANLTQLFHM  324 (967)
Q Consensus       257 n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~---------n~l~~~~~~~l-~~l~~L~~L  324 (967)
                      |.+....+.. +..+++|++|++++| +... ++.....+++|++|++++         +.+++.....+ ..+++|++|
T Consensus       299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L  377 (594)
T 2p1m_B          299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV  377 (594)
T ss_dssp             CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH
Confidence            9854332222 446899999999988 3322 222334589999999944         34442222222 247899999


Q ss_pred             EccCccccccCcccc--ccCcccEEECC--C----CCCCCCCCh----hhhhcccCccEEEcCCCcCCCCcChhccC-CC
Q 046844          325 DFSSNHFFGPIPSLH--KSRNLNNLDLS--F----NNLSGGISS----TFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LP  391 (967)
Q Consensus       325 ~L~~n~l~~~~~~~~--~~~~L~~L~L~--~----n~l~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~  391 (967)
                      .+..+.+++......  .+++|+.|+++  +    +.+++....    ..+..+++|++|++++ .+++..+..+.. ++
T Consensus       378 ~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~  456 (594)
T 2p1m_B          378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAK  456 (594)
T ss_dssp             EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCT
T ss_pred             HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhch
Confidence            988888876433322  35699999998  3    455421111    1256789999999977 666655556655 89


Q ss_pred             CCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCC-C
Q 046844          392 NLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPIL-K  470 (967)
Q Consensus       392 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l-~  470 (967)
                      +|+.|++++|.+++.........+++|+.|++++|.+++.....+...+++|+.|++++|+++.-..        ..+ .
T Consensus       457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------~~l~~  528 (594)
T 2p1m_B          457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGAC--------KLLGQ  528 (594)
T ss_dssp             TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHH--------HHHHH
T ss_pred             hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHH--------HHHHH
Confidence            9999999999987544333324588999999999998654444454678999999999998853211        112 4


Q ss_pred             CCCCccEEECcCCc
Q 046844          471 NQSQLSVLDISDNQ  484 (967)
Q Consensus       471 ~~~~L~~L~Ls~n~  484 (967)
                      .+++|+...+..+.
T Consensus       529 ~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          529 KMPKLNVEVIDERG  542 (594)
T ss_dssp             HCTTEEEEEECSSS
T ss_pred             hCCCCEEEEecCCC
Confidence            45677776666554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=2.7e-23  Score=231.17  Aligned_cols=260  Identities=20%  Similarity=0.195  Sum_probs=191.0

Q ss_pred             eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCC----cccccCCCCCccEEECCCCcCcccCCCCCCCCC-----C
Q 046844          573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIP----ACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGD-----C  643 (967)
Q Consensus       573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p----~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l-----~  643 (967)
                      +.++.|.++|.+|..+...++|++|++++|.+++..+    ..+..... +|++|+|++|.+++..+.. |..+     +
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPA-SVTSLNLSGNSLGFKNSDE-LVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCT-TCCEEECCSSCGGGSCHHH-HHHHHHTSCT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCC-ceeEEECcCCCCCHHHHHH-HHHHHhccCC
Confidence            5677888888888877777779999999999885544    34433321 6899999999888554443 4443     7


Q ss_pred             cccEEeCCCCccCCCCcccc----cCC-CCCCEEECCCCccccccchhhhc-----CCCCCEEEccCCccceec--CCCC
Q 046844          644 GLQILDLSGNQLQGVVPKSL----ANC-NMLQVLDLRSNYISDNFPCWLRN-----ASSLQVLVLRSNNFSGHI--SCPR  711 (967)
Q Consensus       644 ~L~~L~L~~N~l~~~~p~~~----~~l-~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~~~--~~p~  711 (967)
                      +|++|+|++|++++..+..+    ..+ ++|++|++++|++++..+..+..     .++|++|+|++|++++..  ..+.
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            89999999999987776644    444 89999999999998877766554     368999999999987421  0123


Q ss_pred             CCCCCC-CCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccC-CcceE
Q 046844          712 NKVSWP-LLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVP-NIFTS  789 (967)
Q Consensus       712 ~~~~l~-~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~  789 (967)
                      .+..++ +|+.|++++|++++..+..+...+                                        ... +.|+.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l----------------------------------------~~~~~~L~~  200 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFL----------------------------------------ASIPASVTS  200 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHH----------------------------------------HTSCTTCCE
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHH----------------------------------------HhCCCCCCE
Confidence            334454 899999999999877765443111                                        122 47889


Q ss_pred             EECCCCcccCC----CcccccCC-CCCcEEECCCCCCcccCC----ccccCCCCCCeEeCcCccccccC-------Cccc
Q 046844          790 IDFSSNNFEGP----IPVEMGRF-RSLYALNMSHNALTGSIP----SSFGNLKEIESLDLSMNNLSGKI-------PAQL  853 (967)
Q Consensus       790 l~Ls~N~l~g~----ip~~~~~l-~~L~~L~Ls~N~l~g~ip----~~~~~l~~L~~LdLs~N~l~g~i-------p~~l  853 (967)
                      |||++|++++.    +|..+..+ +.|+.|||++|.+++..+    ..+..+++|+.|+|++|.+++..       +..+
T Consensus       201 L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~  280 (362)
T 3goz_A          201 LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF  280 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS
T ss_pred             EECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh
Confidence            99999999874    55556554 589999999999998655    34567899999999999955433       3467


Q ss_pred             cCCCCCCeEEccCCccccCCC
Q 046844          854 ASLNFLSVLNLSYNNLVGKIP  874 (967)
Q Consensus       854 ~~l~~L~~l~ls~N~l~g~ip  874 (967)
                      ..++.|+.||+++|++.+..|
T Consensus       281 ~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          281 PNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             TTCCEEEEECTTSCBCCGGGC
T ss_pred             ccCCceEEEecCCCcCCCcch
Confidence            788889999999999877633

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.8e-23  Score=235.25  Aligned_cols=249  Identities=16%  Similarity=0.217  Sum_probs=194.3

Q ss_pred             cCChhhhcCCCCcEEEcccCcCCCCCCc----ccccCCCCCccEEECCCC---cCcccCCCCC------CCCCCcccEEe
Q 046844          583 VIPESVCKATNFQVLDLSNNNLSGTIPA----CLITKSSSTLEVLNLGRN---NLNGTLSDTI------FPGDCGLQILD  649 (967)
Q Consensus       583 ~~p~~~~~~~~L~~L~Ls~N~l~~~~p~----~~~~~~~~~L~~L~Ls~N---~l~~~ip~~~------~~~l~~L~~L~  649 (967)
                      .++..+..+++|+.|++++|++++..+.    .+....  +|++|+|++|   ++++.+|..+      |..+++|++|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~--~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK--DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT--TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC--CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            4556777888899999999988764332    344444  8999999985   4455556542      36789999999


Q ss_pred             CCCCccCC----CCcccccCCCCCCEEECCCCccccccchhhhc----C---------CCCCEEEccCCccc-eecCCC-
Q 046844          650 LSGNQLQG----VVPKSLANCNMLQVLDLRSNYISDNFPCWLRN----A---------SSLQVLVLRSNNFS-GHISCP-  710 (967)
Q Consensus       650 L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~----l---------~~L~~L~L~~N~l~-~~~~~p-  710 (967)
                      |++|++++    .+|..+..+++|++|+|++|.+++..+..+..    +         ++|++|++++|+++ +.+  + 
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~--~~  178 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM--KE  178 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH--HH
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH--HH
Confidence            99999997    47778899999999999999998655554444    4         89999999999997 222  3 


Q ss_pred             --CCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcce
Q 046844          711 --RNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFT  788 (967)
Q Consensus       711 --~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  788 (967)
                        ..+..+++|+.|++++|+++..--..+..                                       .....++.|+
T Consensus       179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~---------------------------------------~~l~~~~~L~  219 (386)
T 2ca6_A          179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL---------------------------------------EGLAYCQELK  219 (386)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHH---------------------------------------TTGGGCTTCC
T ss_pred             HHHHHHhCCCcCEEECcCCCCCHhHHHHHHH---------------------------------------HHhhcCCCcc
Confidence              35667889999999999886210000100                                       0012467799


Q ss_pred             EEECCCCccc----CCCcccccCCCCCcEEECCCCCCccc----CCccc--cCCCCCCeEeCcCccccc----cCCccc-
Q 046844          789 SIDFSSNNFE----GPIPVEMGRFRSLYALNMSHNALTGS----IPSSF--GNLKEIESLDLSMNNLSG----KIPAQL-  853 (967)
Q Consensus       789 ~l~Ls~N~l~----g~ip~~~~~l~~L~~L~Ls~N~l~g~----ip~~~--~~l~~L~~LdLs~N~l~g----~ip~~l-  853 (967)
                      .|+|++|+++    +.+|..+..+++|+.|+|++|.+++.    +|..+  +.+++|+.|+|++|.+++    .+|..+ 
T Consensus       220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~  299 (386)
T 2ca6_A          220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID  299 (386)
T ss_dssp             EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred             EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence            9999999997    77899999999999999999999987    67777  449999999999999999    588888 


Q ss_pred             cCCCCCCeEEccCCccccCCC
Q 046844          854 ASLNFLSVLNLSYNNLVGKIP  874 (967)
Q Consensus       854 ~~l~~L~~l~ls~N~l~g~ip  874 (967)
                      .+++.|++|++++|++++..|
T Consensus       300 ~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          300 EKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHCTTCCEEECTTSBSCTTSH
T ss_pred             hcCCCceEEEccCCcCCcchh
Confidence            678999999999999998775

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1e-22  Score=224.67  Aligned_cols=238  Identities=20%  Similarity=0.207  Sum_probs=168.8

Q ss_pred             CCCCcccceeEeCCCCcEEEEECCCCCcccccCCCCCCcCC--CCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCC
Q 046844           26 SSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDL--QYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGG  103 (967)
Q Consensus        26 ~~~~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~  103 (967)
                      +.-|.+|.++.|+. ..++.++++++.+..     ..+..+  +++++|++++|.+.+. .+ .+..+++|++|++++|.
T Consensus        33 ~~vc~~W~~~~~~~-~~~~~l~l~~~~~~~-----~~~~~~~~~~l~~L~l~~n~l~~~-~~-~~~~~~~L~~L~L~~~~  104 (336)
T 2ast_B           33 SGVCKRWYRLASDE-SLWQTLDLTGKNLHP-----DVTGRLLSQGVIAFRCPRSFMDQP-LA-EHFSPFRVQHMDLSNSV  104 (336)
T ss_dssp             TSSCHHHHHHHTCS-TTSSEEECTTCBCCH-----HHHHHHHHTTCSEEECTTCEECSC-CC-SCCCCBCCCEEECTTCE
T ss_pred             HHHHHHHHHHhcCc-hhheeeccccccCCH-----HHHHhhhhccceEEEcCCcccccc-ch-hhccCCCCCEEEccCCC
Confidence            34577899999864 457889999887762     345666  8999999999998865 34 46789999999999999


Q ss_pred             CCcc-CChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCc-cCCCcchhHHHHhcCCCCccEEE
Q 046844          104 FAGE-IPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRV-DLSASGTEWCKALSFLPNLQVLS  181 (967)
Q Consensus       104 ~~~~-lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~l~~L~~L~  181 (967)
                      +.+. +|..+.++++|++|++++|. +.       ...+..+.++++|++|++++| .++..  .+...+..+++|++|+
T Consensus       105 l~~~~~~~~~~~~~~L~~L~L~~~~-l~-------~~~~~~l~~~~~L~~L~L~~~~~l~~~--~l~~~~~~~~~L~~L~  174 (336)
T 2ast_B          105 IEVSTLHGILSQCSKLQNLSLEGLR-LS-------DPIVNTLAKNSNLVRLNLSGCSGFSEF--ALQTLLSSCSRLDELN  174 (336)
T ss_dssp             ECHHHHHHHHTTBCCCSEEECTTCB-CC-------HHHHHHHTTCTTCSEEECTTCBSCCHH--HHHHHHHHCTTCCEEE
T ss_pred             cCHHHHHHHHhhCCCCCEEeCcCcc-cC-------HHHHHHHhcCCCCCEEECCCCCCCCHH--HHHHHHhcCCCCCEEc
Confidence            8865 88888999999999999863 22       245556778888888888888 45432  2344566788888888


Q ss_pred             ccCC-CCCCC-CcccccCCC-CCCEEEccCC--CCC-CcchhhhcCCCCCCEEeccCCC-CCCccchhccCCCCCCEEec
Q 046844          182 LSGC-DLSGP-INHYLAKSR-SLSVIRLHYN--YGL-SSGTEFLAHLTNLKALDLSECG-LQGKFPEKILHVPTLETLDL  254 (967)
Q Consensus       182 Ls~~-~l~~~-~~~~l~~l~-~L~~L~L~~n--~~~-~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L  254 (967)
                      +++| .+++. ++..+..++ +|++|++++|  .+. ..++..+..+++|++|++++|. +++..+..+.++++|++|++
T Consensus       175 l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l  254 (336)
T 2ast_B          175 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL  254 (336)
T ss_dssp             CCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             CCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence            8888 77754 456677777 8888888887  444 4456666777888888888887 66666667777777777777


Q ss_pred             cCCC-CCCCCCCCCCCCCCCCEEEccCC
Q 046844          255 SINQ-LLQGSLPNFPKNSSLRDLILSHT  281 (967)
Q Consensus       255 ~~n~-~~~~~~~~~~~l~~L~~L~L~~n  281 (967)
                      ++|. +....+..+..+++|++|++++|
T Consensus       255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          255 SRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            7774 21111112333444444444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=7.3e-22  Score=205.94  Aligned_cols=196  Identities=18%  Similarity=0.177  Sum_probs=139.4

Q ss_pred             CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCc-cCCCCcccccCCCCCCEEECCC-CccccccchhhhcCCCCCEE
Q 046844          619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ-LQGVVPKSLANCNMLQVLDLRS-NYISDNFPCWLRNASSLQVL  696 (967)
Q Consensus       619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L  696 (967)
                      +|++|++++|+++ .+|...|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            7888888888887 4555447888888888888886 7777667788888888888887 88887777778888888888


Q ss_pred             EccCCccceecCCCCCCCCCCCCc---EEecCCc-cCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEE
Q 046844          697 VLRSNNFSGHISCPRNKVSWPLLQ---IVDLACN-KFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVT  772 (967)
Q Consensus       697 ~L~~N~l~~~~~~p~~~~~l~~L~---~Ldls~N-~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  772 (967)
                      ++++|++++.   |. +..+++|+   .|++++| ++++..+..+                                   
T Consensus       111 ~l~~n~l~~l---p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-----------------------------------  151 (239)
T 2xwt_C          111 GIFNTGLKMF---PD-LTKVYSTDIFFILEITDNPYMTSIPVNAF-----------------------------------  151 (239)
T ss_dssp             EEEEECCCSC---CC-CTTCCBCCSEEEEEEESCTTCCEECTTTT-----------------------------------
T ss_pred             eCCCCCCccc---cc-cccccccccccEEECCCCcchhhcCcccc-----------------------------------
Confidence            8888888763   54 66666666   7777777 6653222111                                   


Q ss_pred             EccceeeecccCCcce-EEECCCCcccCCCcccccCCCCCcEEECCCCC-CcccCCccccCC-CCCCeEeCcCccccccC
Q 046844          773 VKGIEIKLLKVPNIFT-SIDFSSNNFEGPIPVEMGRFRSLYALNMSHNA-LTGSIPSSFGNL-KEIESLDLSMNNLSGKI  849 (967)
Q Consensus       773 ~~~~~~~~~~~~~~l~-~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~l-~~L~~LdLs~N~l~g~i  849 (967)
                               ..++.++ .|++++|+++ .+|......++|+.|+|++|+ +++..|..|+++ ++|+.||+++|++++. 
T Consensus       152 ---------~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-  220 (239)
T 2xwt_C          152 ---------QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-  220 (239)
T ss_dssp             ---------TTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-
T ss_pred             ---------cchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-
Confidence                     1355677 7777777777 455443333677888888884 776666777777 7888888888888753 


Q ss_pred             CccccCCCCCCeEEccCC
Q 046844          850 PAQLASLNFLSVLNLSYN  867 (967)
Q Consensus       850 p~~l~~l~~L~~l~ls~N  867 (967)
                      |..  .++.|+.|+++++
T Consensus       221 ~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          221 PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCT--TCTTCSEEECTTC
T ss_pred             Chh--HhccCceeeccCc
Confidence            433  5667777777764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=1.8e-22  Score=224.57  Aligned_cols=239  Identities=19%  Similarity=0.220  Sum_probs=161.5

Q ss_pred             eeecCCcccccCC----hhhhcCC-CCcEEEcccCcCCCCCCcccccC-----CCCCccEEECCCCcCcccCCCC---CC
Q 046844          573 FVAANNSLAGVIP----ESVCKAT-NFQVLDLSNNNLSGTIPACLITK-----SSSTLEVLNLGRNNLNGTLSDT---IF  639 (967)
Q Consensus       573 l~l~~n~l~~~~p----~~~~~~~-~L~~L~Ls~N~l~~~~p~~~~~~-----~~~~L~~L~Ls~N~l~~~ip~~---~~  639 (967)
                      |++++|.+++..+    ..+..++ +|++|++++|++++..+..+...     .  +|++|+|++|.+++..+..   .+
T Consensus        27 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~--~L~~L~Ls~n~l~~~~~~~l~~~l  104 (362)
T 3goz_A           27 LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA--NVTSLNLSGNFLSYKSSDELVKTL  104 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT--TCCEEECCSSCGGGSCHHHHHHHH
T ss_pred             EEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC--CccEEECcCCcCChHHHHHHHHHH
Confidence            4444444444433    4555666 78888888888876655555442     3  7888888888887544332   12


Q ss_pred             CCC-CcccEEeCCCCccCCCCccccc----C-CCCCCEEECCCCcccccc----chhhhcCC-CCCEEEccCCccceecC
Q 046844          640 PGD-CGLQILDLSGNQLQGVVPKSLA----N-CNMLQVLDLRSNYISDNF----PCWLRNAS-SLQVLVLRSNNFSGHIS  708 (967)
Q Consensus       640 ~~l-~~L~~L~L~~N~l~~~~p~~~~----~-l~~L~~L~Ls~N~l~~~~----p~~l~~l~-~L~~L~L~~N~l~~~~~  708 (967)
                      ... ++|++|+|++|++++..+..+.    . +++|++|++++|++++..    +..+..++ +|++|+|++|++++.. 
T Consensus       105 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~-  183 (362)
T 3goz_A          105 AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN-  183 (362)
T ss_dssp             HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-
T ss_pred             HhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh-
Confidence            233 6788888888888876665543    3 468888888888888543    34445555 8888888888887643 


Q ss_pred             CCC----CCCCC-CCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeeccc
Q 046844          709 CPR----NKVSW-PLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKV  783 (967)
Q Consensus       709 ~p~----~~~~l-~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  783 (967)
                       +.    .+..+ ++|+.||+++|++++.....+...+                                       ...
T Consensus       184 -~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l---------------------------------------~~~  223 (362)
T 3goz_A          184 -CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF---------------------------------------SSI  223 (362)
T ss_dssp             -HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH---------------------------------------HHS
T ss_pred             -HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH---------------------------------------hcC
Confidence             32    23344 5888999999988764332221110                                       012


Q ss_pred             CCcceEEECCCCcccCCCcc----cccCCCCCcEEECCCCCCccc-------CCccccCCCCCCeEeCcCccccccCCcc
Q 046844          784 PNIFTSIDFSSNNFEGPIPV----EMGRFRSLYALNMSHNALTGS-------IPSSFGNLKEIESLDLSMNNLSGKIPAQ  852 (967)
Q Consensus       784 ~~~l~~l~Ls~N~l~g~ip~----~~~~l~~L~~L~Ls~N~l~g~-------ip~~~~~l~~L~~LdLs~N~l~g~ip~~  852 (967)
                      .+.|+.|||++|++++..+.    .+..++.|++|+|++|.+++.       ++..+.++++|+.||+++|++.+..|..
T Consensus       224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~  303 (362)
T 3goz_A          224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP  303 (362)
T ss_dssp             CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred             CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence            35788999999999887663    346778999999999996544       3446788899999999999998876655


Q ss_pred             cc
Q 046844          853 LA  854 (967)
Q Consensus       853 l~  854 (967)
                      +.
T Consensus       304 ~~  305 (362)
T 3goz_A          304 IS  305 (362)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=3e-22  Score=220.83  Aligned_cols=247  Identities=15%  Similarity=0.177  Sum_probs=175.8

Q ss_pred             eeecCCcccccCChhhhcC--CCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCccc-CCCCCCCCCCcccEEe
Q 046844          573 FVAANNSLAGVIPESVCKA--TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGT-LSDTIFPGDCGLQILD  649 (967)
Q Consensus       573 l~l~~n~l~~~~p~~~~~~--~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~-ip~~~~~~l~~L~~L~  649 (967)
                      ++++++.+.   +..+..+  ++++.|++++|.+.+..+.. ....  +|++|++++|.+++. +|.. +..+++|++|+
T Consensus        52 l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~--~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~L~  124 (336)
T 2ast_B           52 LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPF--RVQHMDLSNSVIEVSTLHGI-LSQCSKLQNLS  124 (336)
T ss_dssp             EECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCB--CCCEEECTTCEECHHHHHHH-HTTBCCCSEEE
T ss_pred             eccccccCC---HHHHHhhhhccceEEEcCCccccccchhh-ccCC--CCCEEEccCCCcCHHHHHHH-HhhCCCCCEEe
Confidence            455555444   2344445  67888888888888665553 3333  888888888888755 5554 77788888888


Q ss_pred             CCCCccCCCCcccccCCCCCCEEECCCC-ccccc-cchhhhcCCCCCEEEccCC-cccee-cCCCCCCCCCC-CCcEEec
Q 046844          650 LSGNQLQGVVPKSLANCNMLQVLDLRSN-YISDN-FPCWLRNASSLQVLVLRSN-NFSGH-ISCPRNKVSWP-LLQIVDL  724 (967)
Q Consensus       650 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~-~~~p~~~~~l~-~L~~Ldl  724 (967)
                      +++|.+++..+..+..+++|++|++++| .+++. ++..+.++++|++|++++| .+++. +  +..+..++ +|+.|++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV--QVAVAHVSETITQLNL  202 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH--HHHHHHSCTTCCEEEC
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH--HHHHHhcccCCCEEEe
Confidence            8888888777788888888888888888 67763 6677888888888888888 77753 2  55566777 8888888


Q ss_pred             CCc--cCc-CcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCc-ccCC
Q 046844          725 ACN--KFS-GRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNN-FEGP  800 (967)
Q Consensus       725 s~N--~l~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~-l~g~  800 (967)
                      ++|  .++ +.+|..+                                            ..++.|+.|++++|. +++.
T Consensus       203 ~~~~~~~~~~~l~~~~--------------------------------------------~~~~~L~~L~l~~~~~l~~~  238 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLV--------------------------------------------RRCPNLVHLDLSDSVMLKND  238 (336)
T ss_dssp             CSCGGGSCHHHHHHHH--------------------------------------------HHCTTCSEEECTTCTTCCGG
T ss_pred             CCCcccCCHHHHHHHH--------------------------------------------hhCCCCCEEeCCCCCcCCHH
Confidence            888  444 2333211                                            135678888898888 7777


Q ss_pred             CcccccCCCCCcEEECCCCC-CcccCCccccCCCCCCeEeCcCccccccCCccccCC-CCCCeEEccCCccccCCCCC
Q 046844          801 IPVEMGRFRSLYALNMSHNA-LTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASL-NFLSVLNLSYNNLVGKIPTS  876 (967)
Q Consensus       801 ip~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~l~ls~N~l~g~ip~~  876 (967)
                      .+..++.+++|+.|+|++|. ++......++++++|+.|++++| ++..   .+..+ ..|..|++++|+++|..|..
T Consensus       239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          239 CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCc
Confidence            88888888889999998885 33222235788888999999888 3322   23333 23666778888888888753

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=3.7e-20  Score=194.43  Aligned_cols=187  Identities=23%  Similarity=0.243  Sum_probs=151.2

Q ss_pred             eeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEEC
Q 046844          546 YVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNL  625 (967)
Q Consensus       546 ~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~L  625 (967)
                      +++++++.++.+|..+.   ..++.  |++++|.+.+..+..+..+++|++|++++|++++..|..+....  +|++|+|
T Consensus        18 ~l~~~~~~l~~~p~~~~---~~l~~--L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L   90 (251)
T 3m19_A           18 EVDCQGKSLDSVPSGIP---ADTEK--LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT--ELGTLGL   90 (251)
T ss_dssp             EEECTTCCCSSCCSCCC---TTCCE--EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT--TCCEEEC
T ss_pred             EEecCCCCccccCCCCC---CCCCE--EEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC--cCCEEEC
Confidence            34444444444444332   22333  66667777776677788899999999999999977777777665  9999999


Q ss_pred             CCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccce
Q 046844          626 GRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSG  705 (967)
Q Consensus       626 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  705 (967)
                      ++|+++ .+|...|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+|++|++++
T Consensus        91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            999999 5555559999999999999999998888889999999999999999999888899999999999999999998


Q ss_pred             ecCCCCCCCCCCCCcEEecCCccCcCc-CcHHHHHHHh
Q 046844          706 HISCPRNKVSWPLLQIVDLACNKFSGR-LSQKWLLTMM  742 (967)
Q Consensus       706 ~~~~p~~~~~l~~L~~Ldls~N~l~g~-~p~~~~~~~~  742 (967)
                      ..  +..+..+++|+.|++++|++++. +...++..++
T Consensus       170 ~~--~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~  205 (251)
T 3m19_A          170 VP--HGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWI  205 (251)
T ss_dssp             CC--TTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHH
T ss_pred             cC--HHHHhCCCCCCEEEeeCCceeCCccccHHHHHHH
Confidence            76  67889999999999999999998 4444443333

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=5e-21  Score=199.61  Aligned_cols=197  Identities=15%  Similarity=0.175  Sum_probs=159.2

Q ss_pred             CCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCc-CcccCCCCCCCCCCcccEEeCCC-CccCCCCcccccCCCCC
Q 046844          592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNN-LNGTLSDTIFPGDCGLQILDLSG-NQLQGVVPKSLANCNML  669 (967)
Q Consensus       592 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~-l~~~ip~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L  669 (967)
                      ++|++|++++|++++..+..+..+.  +|++|++++|+ ++ .++...|.++++|++|++++ |++++..+..|.++++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~--~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L  107 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLP--NISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL  107 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCT--TCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred             CcccEEEEeCCcceEECHHHccCCC--CCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence            4788888888888855555666655  88888888887 76 56665588888999999998 89988777888899999


Q ss_pred             CEEECCCCccccccchhhhcCCCCC---EEEccCC-ccceecCCCCCCCCCCCCc-EEecCCccCcCcCcHHHHHHHhhc
Q 046844          670 QVLDLRSNYISDNFPCWLRNASSLQ---VLVLRSN-NFSGHISCPRNKVSWPLLQ-IVDLACNKFSGRLSQKWLLTMMVA  744 (967)
Q Consensus       670 ~~L~Ls~N~l~~~~p~~l~~l~~L~---~L~L~~N-~l~~~~~~p~~~~~l~~L~-~Ldls~N~l~g~~p~~~~~~~~~~  744 (967)
                      ++|++++|++++ +|. |..+++|+   +|++++| ++++..  +..+..+++|+ .|++++|+++ .+|...+      
T Consensus       108 ~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~--~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~------  176 (239)
T 2xwt_C          108 KFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP--VNAFQGLCNETLTLKLYNNGFT-SVQGYAF------  176 (239)
T ss_dssp             CEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC--TTTTTTTBSSEEEEECCSCCCC-EECTTTT------
T ss_pred             CEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC--cccccchhcceeEEEcCCCCCc-ccCHhhc------
Confidence            999999999988 555 78888888   9999999 888775  66788899999 9999999887 5553211      


Q ss_pred             ccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCc-ccCCCcccccCC-CCCcEEECCCCCCc
Q 046844          745 ETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNN-FEGPIPVEMGRF-RSLYALNMSHNALT  822 (967)
Q Consensus       745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~-l~g~ip~~~~~l-~~L~~L~Ls~N~l~  822 (967)
                                                            ..+.|+.|++++|+ +++..|..|+.+ ++|+.|||++|+++
T Consensus       177 --------------------------------------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          177 --------------------------------------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             --------------------------------------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             --------------------------------------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence                                                  12568999999995 987777889999 99999999999999


Q ss_pred             ccCCccccCCCCCCeEeCcCc
Q 046844          823 GSIPSSFGNLKEIESLDLSMN  843 (967)
Q Consensus       823 g~ip~~~~~l~~L~~LdLs~N  843 (967)
                      + +|..  .+++|+.|+++++
T Consensus       219 ~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          219 A-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             C-CCCT--TCTTCSEEECTTC
T ss_pred             c-CChh--HhccCceeeccCc
Confidence            5 5554  6789999999876

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=2e-20  Score=202.67  Aligned_cols=82  Identities=17%  Similarity=0.312  Sum_probs=53.1

Q ss_pred             CCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEE
Q 046844          784 PNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLN  863 (967)
Q Consensus       784 ~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~  863 (967)
                      ++.|+.|++++|++++..|  ++.+++|+.|+|++|++++..|  +..+++|+.|||++|++++..|  +..++.|+.|+
T Consensus       150 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~  223 (308)
T 1h6u_A          150 LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT  223 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEE
T ss_pred             CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEE
Confidence            3445566666666654333  6667777777777777765433  6677777777777777776543  66677777777


Q ss_pred             ccCCcccc
Q 046844          864 LSYNNLVG  871 (967)
Q Consensus       864 ls~N~l~g  871 (967)
                      +++|++++
T Consensus       224 l~~N~i~~  231 (308)
T 1h6u_A          224 LTNQTITN  231 (308)
T ss_dssp             EEEEEEEC
T ss_pred             ccCCeeec
Confidence            77777765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=1.2e-20  Score=204.44  Aligned_cols=207  Identities=21%  Similarity=0.308  Sum_probs=166.3

Q ss_pred             ecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCc
Q 046844          575 AANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ  654 (967)
Q Consensus       575 l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~  654 (967)
                      +..+.+.+.++  ...+++|+.|++++|.++ .+| .+..+.  +|++|++++|.++ .++.  +..+++|++|++++|+
T Consensus        26 l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~l~-~~~~l~--~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~   96 (308)
T 1h6u_A           26 AGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLN--NLIGLELKDNQIT-DLAP--LKNLTKITELELSGNP   96 (308)
T ss_dssp             TTCSSTTSEEC--HHHHHTCCEEECTTSCCC-CCT-TGGGCT--TCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCC
T ss_pred             hCCCCcCceec--HHHcCCcCEEEeeCCCcc-Cch-hhhccC--CCCEEEccCCcCC-CChh--HccCCCCCEEEccCCc
Confidence            34444444332  346778999999999987 466 455555  8999999999998 4544  7888999999999999


Q ss_pred             cCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCc
Q 046844          655 LQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLS  734 (967)
Q Consensus       655 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p  734 (967)
                      +++.  ..+..+++|++|++++|++++..+  +..+++|++|++++|++++..  +  +..+++|+.|++++|++++..+
T Consensus        97 l~~~--~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~--l~~l~~L~~L~l~~n~l~~~~~  168 (308)
T 1h6u_A           97 LKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS--P--LAGLTNLQYLSIGNAQVSDLTP  168 (308)
T ss_dssp             CSCC--GGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--G--GGGCTTCCEEECCSSCCCCCGG
T ss_pred             CCCc--hhhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCc--c--ccCCCCccEEEccCCcCCCChh
Confidence            9864  368889999999999999988543  888999999999999998764  2  7788999999999999875332


Q ss_pred             HHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEE
Q 046844          735 QKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYAL  814 (967)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L  814 (967)
                        +                                            ..++.|+.|++++|++++..|  +..+++|+.|
T Consensus       169 --l--------------------------------------------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L  200 (308)
T 1h6u_A          169 --L--------------------------------------------ANLSKLTTLKADDNKISDISP--LASLPNLIEV  200 (308)
T ss_dssp             --G--------------------------------------------TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred             --h--------------------------------------------cCCCCCCEEECCCCccCcChh--hcCCCCCCEE
Confidence              1                                            246779999999999987654  8899999999


Q ss_pred             ECCCCCCcccCCccccCCCCCCeEeCcCcccccc
Q 046844          815 NMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGK  848 (967)
Q Consensus       815 ~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~  848 (967)
                      +|++|++++..|  +..+++|+.|+|++|.+++.
T Consensus       201 ~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          201 HLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             ECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred             EccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence            999999997654  89999999999999999863

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=5.2e-20  Score=213.66  Aligned_cols=191  Identities=25%  Similarity=0.358  Sum_probs=151.9

Q ss_pred             CCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCC
Q 046844          591 ATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQ  670 (967)
Q Consensus       591 ~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  670 (967)
                      ..+++.|++++|++++ +|..+.  .  +|+.|+|++|+++ .+| .   .+++|++|+|++|+|++ +|. +..  +|+
T Consensus        58 ~~~L~~L~Ls~n~L~~-lp~~l~--~--~L~~L~Ls~N~l~-~ip-~---~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~  123 (571)
T 3cvr_A           58 INQFSELQLNRLNLSS-LPDNLP--P--QITVLEITQNALI-SLP-E---LPASLEYLDACDNRLST-LPE-LPA--SLK  123 (571)
T ss_dssp             HTTCSEEECCSSCCSC-CCSCCC--T--TCSEEECCSSCCS-CCC-C---CCTTCCEEECCSSCCSC-CCC-CCT--TCC
T ss_pred             cCCccEEEeCCCCCCc-cCHhHc--C--CCCEEECcCCCCc-ccc-c---ccCCCCEEEccCCCCCC-cch-hhc--CCC
Confidence            3489999999999985 887653  3  8999999999998 788 3   35789999999999997 666 655  899


Q ss_pred             EEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCc
Q 046844          671 VLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGS  750 (967)
Q Consensus       671 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~  750 (967)
                      .|++++|+|++ +|.   .+++|+.|+|++|++++.   |.   .+++|+.|++++|++++ +|. +             
T Consensus       124 ~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l---p~---~l~~L~~L~Ls~N~L~~-lp~-l-------------  178 (571)
T 3cvr_A          124 HLDVDNNQLTM-LPE---LPALLEYINADNNQLTML---PE---LPTSLEVLSVRNNQLTF-LPE-L-------------  178 (571)
T ss_dssp             EEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC---CC---CCTTCCEEECCSSCCSC-CCC-C-------------
T ss_pred             EEECCCCcCCC-CCC---cCccccEEeCCCCccCcC---CC---cCCCcCEEECCCCCCCC-cch-h-------------
Confidence            99999999998 554   688999999999999874   54   56888999999998876 552 1             


Q ss_pred             ccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCC-------cEEECCCCCCcc
Q 046844          751 EVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSL-------YALNMSHNALTG  823 (967)
Q Consensus       751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L-------~~L~Ls~N~l~g  823 (967)
                                                       .+.|+.|||++|+++ .+|. |..  +|       +.|+|++|+|+ 
T Consensus       179 ---------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-  220 (571)
T 3cvr_A          179 ---------------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-  220 (571)
T ss_dssp             ---------------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-
T ss_pred             ---------------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-
Confidence                                             146788888888888 6676 655  67       88888888888 


Q ss_pred             cCCccccCCCCCCeEeCcCccccccCCccccCCCC
Q 046844          824 SIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNF  858 (967)
Q Consensus       824 ~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~  858 (967)
                      .||..+..+++|+.|||++|.|+|.+|..+..++.
T Consensus       221 ~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            58888888888888888888888888888777543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=9.8e-22  Score=220.98  Aligned_cols=228  Identities=17%  Similarity=0.186  Sum_probs=108.5

Q ss_pred             CCCccccCCCCCCEEeCCCCCCCccCCh----hccCCCCCCEEeCCCCC--CCccccccccccHHHHhcCCCCCCEEEcC
Q 046844           83 QIPSRLGNLTNLTYLNLSQGGFAGEIPT----EISSLTRLVTLDLSGIV--PIEYSYTVWIANLSLFLQNLTELTELHLD  156 (967)
Q Consensus        83 ~lp~~l~~l~~L~~L~Ls~~~~~~~lp~----~l~~l~~L~~L~Ls~~~--~l~~~~~~~~~~l~~~l~~l~~L~~L~l~  156 (967)
                      .++..+..+++|++|+|++|.+.+..+.    .+.++++|++|++++|.  .+..........+...+.++++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            3566677777888888888877755333    35567777777777652  11100011112222223444444444444


Q ss_pred             CccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhc----CC---------C
Q 046844          157 RVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLA----HL---------T  223 (967)
Q Consensus       157 ~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~----~l---------~  223 (967)
                      +|.+...+..                       .++..+..+++|++|+|++|.+....+..+.    .+         +
T Consensus       103 ~n~l~~~~~~-----------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~  159 (386)
T 2ca6_A          103 DNAFGPTAQE-----------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP  159 (386)
T ss_dssp             SCCCCTTTHH-----------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCcCCHHHHH-----------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC
Confidence            4444332211                       1333444444445555544444332222222    22         5


Q ss_pred             CCCEEeccCCCCC-Cccc---hhccCCCCCCEEeccCCCCCCCC----CC-CCCCCCCCCEEEccCCCCC----CCcccc
Q 046844          224 NLKALDLSECGLQ-GKFP---EKILHVPTLETLDLSINQLLQGS----LP-NFPKNSSLRDLILSHTGLS----GTLPDS  290 (967)
Q Consensus       224 ~L~~L~Ls~n~l~-~~~~---~~l~~l~~L~~L~L~~n~~~~~~----~~-~~~~l~~L~~L~L~~n~l~----~~~~~~  290 (967)
                      +|++|++++|.++ +.++   ..+..+++|++|++++|.+....    .+ .+..+++|++|++++|.++    ..+|..
T Consensus       160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~  239 (386)
T 2ca6_A          160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  239 (386)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence            5555555555554 2222   23445555555555555442110    11 2333444555555555543    334555


Q ss_pred             ccCCCCCCEEEccCCCCCCC----CCccc--cCCCCCcEEEccCccccc
Q 046844          291 IGNLENLTRVEVSSCNFTGP----IPPSM--ANLTQLFHMDFSSNHFFG  333 (967)
Q Consensus       291 l~~l~~L~~L~Ls~n~l~~~----~~~~l--~~l~~L~~L~L~~n~l~~  333 (967)
                      +..+++|++|+|++|.+++.    ++..+  +.+++|++|++++|.+++
T Consensus       240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            55566666666666655533    23333  224555555555555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=3.7e-20  Score=214.93  Aligned_cols=130  Identities=27%  Similarity=0.452  Sum_probs=61.4

Q ss_pred             eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCC
Q 046844          573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG  652 (967)
Q Consensus       573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~  652 (967)
                      |++++|.+++ +|..+.  ++|++|++++|+|+ .+| .+  ..  +|++|+|++|++++ +|.  |..  +|++|+|++
T Consensus        64 L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip-~~--l~--~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           64 LQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP-EL--PA--SLEYLDACDNRLST-LPE--LPA--SLKHLDVDN  129 (571)
T ss_dssp             EECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC-CC--CT--TCCEEECCSSCCSC-CCC--CCT--TCCEEECCS
T ss_pred             EEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc-cc--cC--CCCEEEccCCCCCC-cch--hhc--CCCEEECCC
Confidence            5555555544 343332  44555555555554 444 11  11  45555555555553 444  222  455555555


Q ss_pred             CccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCc
Q 046844          653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFS  730 (967)
Q Consensus       653 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~  730 (967)
                      |+|++ +|.   .+++|+.|++++|+|++ +|.   .+++|++|+|++|++++.   |. +.  ++|+.|||++|+++
T Consensus       130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~l---p~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFL---PE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC---CC-CC--TTCCEEECCSSCCS
T ss_pred             CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCc---ch-hh--CCCCEEECcCCCCC
Confidence            55554 333   34555555555555554 232   344555555555555542   33 32  45555555555554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=5.3e-20  Score=199.89  Aligned_cols=225  Identities=20%  Similarity=0.175  Sum_probs=151.7

Q ss_pred             CCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccc--cCCCCCCEEEccCCCCCCcch----hhhcCCC
Q 046844          150 LTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYL--AKSRSLSVIRLHYNYGLSSGT----EFLAHLT  223 (967)
Q Consensus       150 L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l--~~l~~L~~L~L~~n~~~~~~~----~~l~~l~  223 (967)
                      ++.+.+.++.+.............+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..++
T Consensus        66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~  145 (310)
T 4glp_A           66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP  145 (310)
T ss_dssp             CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred             eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence            3444444444433222212223345679999999999988888777  889999999999999887543    3456789


Q ss_pred             CCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCC---CCCC-CCCCCCCCCEEEccCCCCCCCccc----cccCCC
Q 046844          224 NLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQ---GSLP-NFPKNSSLRDLILSHTGLSGTLPD----SIGNLE  295 (967)
Q Consensus       224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~---~~~~-~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~  295 (967)
                      +|++|++++|.+.+..+..+..+++|++|++++|++..   .... .+..+++|++|++++|+++. ++.    .++.++
T Consensus       146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~  224 (310)
T 4glp_A          146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGV  224 (310)
T ss_dssp             CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTC
T ss_pred             CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCC
Confidence            99999999999988888889999999999999998643   1112 23567888888998888863 333    246778


Q ss_pred             CCCEEEccCCCCCCCCCccccCC---CCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEE
Q 046844          296 NLTRVEVSSCNFTGPIPPSMANL---TQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIV  372 (967)
Q Consensus       296 ~L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  372 (967)
                      +|++|++++|++++..|..+..+   ++|++|++++|+++ .+|.... ++|++|++++|++++. |.  +..+++|+.|
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l~~~-~~--~~~l~~L~~L  299 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRLNRA-PQ--PDELPEVDNL  299 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCCCSC-CC--TTSCCCCSCE
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcCCCC-ch--hhhCCCccEE
Confidence            88888888888887767666665   57777777777776 3333222 4566666666655532 21  2334444444


Q ss_pred             EcCCCcCC
Q 046844          373 VLGHNSLS  380 (967)
Q Consensus       373 ~L~~n~l~  380 (967)
                      ++++|.++
T Consensus       300 ~L~~N~l~  307 (310)
T 4glp_A          300 TLDGNPFL  307 (310)
T ss_dssp             ECSSTTTS
T ss_pred             ECcCCCCC
Confidence            44444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1e-19  Score=201.12  Aligned_cols=222  Identities=17%  Similarity=0.123  Sum_probs=139.9

Q ss_pred             CCCcEEEcccCcCCCCCC-cccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccE-EeCCCCccCCCCcccccCCCCC
Q 046844          592 TNFQVLDLSNNNLSGTIP-ACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQI-LDLSGNQLQGVVPKSLANCNML  669 (967)
Q Consensus       592 ~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~-L~L~~N~l~~~~p~~~~~l~~L  669 (967)
                      +++++|+|++|+|+ .+| ..|..+.  +|++|+|++|++.+.+|..+|.+++++++ +.+++|+++...|..|..+++|
T Consensus        30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~--~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLTKLR-VIQKGAFSGFG--DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESCCCS-EECTTSSTTCT--TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred             CCCCEEEccCCcCC-CcCHHHHcCCC--CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence            35667777777776 344 3455444  67777777777666666666777766654 5556677777777777777777


Q ss_pred             CEEECCCCccccccchhhhcCCCCCEEEccC-CccceecCCCCCCCCCC-CCcEEecCCccCcCcCcHHHHHHHhhcccC
Q 046844          670 QVLDLRSNYISDNFPCWLRNASSLQVLVLRS-NNFSGHISCPRNKVSWP-LLQIVDLACNKFSGRLSQKWLLTMMVAETK  747 (967)
Q Consensus       670 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~p~~~~~l~-~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~  747 (967)
                      ++|++++|++++..+..+....++..|++.+ |++....  +..+..+. .++.|++++|+++. +|...+         
T Consensus       107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~--~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f---------  174 (350)
T 4ay9_X          107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE--RNSFVGLSFESVILWLNKNGIQE-IHNSAF---------  174 (350)
T ss_dssp             CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC--TTSSTTSBSSCEEEECCSSCCCE-ECTTSS---------
T ss_pred             ccccccccccccCCchhhcccchhhhhhhcccccccccc--ccchhhcchhhhhhccccccccC-CChhhc---------
Confidence            7777777777776666666666777777755 4555443  34445443 56777777777753 221110         


Q ss_pred             CCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCc-ccccCCCCCcEEECCCCCCcccCC
Q 046844          748 SGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIP-VEMGRFRSLYALNMSHNALTGSIP  826 (967)
Q Consensus       748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip-~~~~~l~~L~~L~Ls~N~l~g~ip  826 (967)
                                                         ....++.+++++|+..+.|| ..|+.+++|++||||+|+|+...+
T Consensus       175 -----------------------------------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          175 -----------------------------------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             -----------------------------------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred             -----------------------------------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence                                               12346777887544444555 457888888888888888885433


Q ss_pred             ccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCC
Q 046844          827 SSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN  867 (967)
Q Consensus       827 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N  867 (967)
                      ..|.   +|+.|...++.--..+| .+.++++|+.++++++
T Consensus       220 ~~~~---~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          220 YGLE---NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             SSCT---TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             hhhc---cchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            3444   44444444433334566 3777888888888765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=6.4e-20  Score=186.69  Aligned_cols=133  Identities=25%  Similarity=0.234  Sum_probs=60.8

Q ss_pred             CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844          593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL  672 (967)
Q Consensus       593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  672 (967)
                      +|++|++++|++++..+..+....  +|++|++++|+++ .+|...|..+++|++|++++|++++..+..|..+++|++|
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELT--SLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCT--TCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcEEEcCCCccCcCChhhhcccc--cCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence            444555555555432222233322  4555555555544 3333334444555555555555554444444455555555


Q ss_pred             ECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCc
Q 046844          673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFS  730 (967)
Q Consensus       673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~  730 (967)
                      ++++|++++..+..|.++++|++|++++|++++..  +..+..+++|+.|++++|++.
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP--DGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSCCBC
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCccceeC--HHHhccCCCccEEEecCCCee
Confidence            55555555444444444555555555555544432  223344444444444444433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.1e-19  Score=185.03  Aligned_cols=81  Identities=16%  Similarity=0.166  Sum_probs=48.2

Q ss_pred             EEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCc
Q 046844          789 SIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN  868 (967)
Q Consensus       789 ~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~  868 (967)
                      .|++++|++++..|..|+.+++|++|+|++|++++..+..|+.+++|+.|++++|.+.+..       +.|++|+++.|+
T Consensus       104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~L~~~~n~  176 (208)
T 2o6s_A          104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINK  176 (208)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT-------TTTHHHHHHHHH
T ss_pred             EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC-------CCHHHHHHHHHh
Confidence            3333333444344444566666666666666666655555666666777777776665433       356666677777


Q ss_pred             cccCCCCC
Q 046844          869 LVGKIPTS  876 (967)
Q Consensus       869 l~g~ip~~  876 (967)
                      ++|.||..
T Consensus       177 ~~g~ip~~  184 (208)
T 2o6s_A          177 HSGVVRNS  184 (208)
T ss_dssp             CTTTBBCT
T ss_pred             CCceeecc
Confidence            77777643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=2.7e-19  Score=197.71  Aligned_cols=239  Identities=18%  Similarity=0.179  Sum_probs=181.5

Q ss_pred             hhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCc-ccccC
Q 046844          587 SVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP-KSLAN  665 (967)
Q Consensus       587 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~  665 (967)
                      .+|.|.. ++++.++++++ .+|..+.    +++++|+|++|+|+ .||..+|.++++|++|+|++|++.+.+| .+|.+
T Consensus         5 ~~C~C~~-~~v~C~~~~Lt-~iP~~l~----~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~   77 (350)
T 4ay9_X            5 RICHCSN-RVFLCQESKVT-EIPSDLP----RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN   77 (350)
T ss_dssp             SSSEEET-TEEEEESTTCC-SCCTTCC----TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS
T ss_pred             CccEeeC-CEEEecCCCCC-ccCcCcC----CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc
Confidence            3455543 57889999998 7888762    38999999999999 7888779999999999999999976555 57899


Q ss_pred             CCCCCE-EECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhc
Q 046844          666 CNMLQV-LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVA  744 (967)
Q Consensus       666 l~~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~  744 (967)
                      +++|+. +++++|+++.+.|..|.++++|++|++++|++++..  +..+....++..+++.++.-...+|...       
T Consensus        78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~l~~l~l~~~~~i~~l~~~~-------  148 (350)
T 4ay9_X           78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP--DVHKIHSLQKVLLDIQDNINIHTIERNS-------  148 (350)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC--CCTTCCBSSCEEEEEESCTTCCEECTTS-------
T ss_pred             chhhhhhhcccCCcccccCchhhhhccccccccccccccccCC--chhhcccchhhhhhhccccccccccccc-------
Confidence            988775 677889999999999999999999999999998775  5566677788899997754333333211       


Q ss_pred             ccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCccc
Q 046844          745 ETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGS  824 (967)
Q Consensus       745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~  824 (967)
                                                         +......++.|+|++|+++. ||.......+|+.|++++|+.-+.
T Consensus       149 -----------------------------------f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~  192 (350)
T 4ay9_X          149 -----------------------------------FVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEE  192 (350)
T ss_dssp             -----------------------------------STTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCC
T ss_pred             -----------------------------------hhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccC
Confidence                                               01123457889999999985 565566677899999986444445


Q ss_pred             CC-ccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCCCcCC
Q 046844          825 IP-SSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQ  880 (967)
Q Consensus       825 ip-~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~  880 (967)
                      || ..|+++++|+.||||+|+|+...+..+   ..|+.|.+.+++--..+|.-..+.
T Consensus       193 i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~l~  246 (350)
T 4ay9_X          193 LPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEKLV  246 (350)
T ss_dssp             CCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTTCC
T ss_pred             CCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchhCc
Confidence            66 568999999999999999996655444   455666665555445677543333

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=4.2e-18  Score=174.41  Aligned_cols=146  Identities=23%  Similarity=0.270  Sum_probs=126.6

Q ss_pred             CCcEEEcccCcCCCCCCc-ccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCE
Q 046844          593 NFQVLDLSNNNLSGTIPA-CLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV  671 (967)
Q Consensus       593 ~L~~L~Ls~N~l~~~~p~-~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  671 (967)
                      .+++|++++|++++..|. .+....  +|++|+|++|++++ ++...|.++++|++|+|++|++++..+..|..+++|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~--~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  109 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLP--QLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT  109 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCT--TCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred             CCCEEEcCCCcCCccCchhhhccCC--CCCEEECCCCcCCE-ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence            457888888888865443 355555  89999999999984 44444999999999999999999998889999999999


Q ss_pred             EECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhh
Q 046844          672 LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMV  743 (967)
Q Consensus       672 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~  743 (967)
                      |+|++|+|++..|..|.++++|++|+|++|++++..  |..+..+++|+.|++++|+++|.++..++..++.
T Consensus       110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~  179 (220)
T 2v70_A          110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA--PGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR  179 (220)
T ss_dssp             EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC--TTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred             EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC--HHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence            999999999999999999999999999999999987  8899999999999999999999999888755443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=4.7e-18  Score=174.02  Aligned_cols=86  Identities=27%  Similarity=0.246  Sum_probs=62.7

Q ss_pred             EEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCc
Q 046844          789 SIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN  868 (967)
Q Consensus       789 ~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~  868 (967)
                      .|+|++|++++..|..|+.+++|++|+|++|++++.+|..|+.+++|+.|||++|++++.+|..+..++.|+.|++++|.
T Consensus        85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            33444444444555567777777888888888887777777788888888888888887777778888888888888888


Q ss_pred             cccCCC
Q 046844          869 LVGKIP  874 (967)
Q Consensus       869 l~g~ip  874 (967)
                      +++..+
T Consensus       165 l~c~c~  170 (220)
T 2v70_A          165 FNCNCY  170 (220)
T ss_dssp             EECSGG
T ss_pred             CcCCCc
Confidence            877665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.1e-18  Score=185.03  Aligned_cols=188  Identities=22%  Similarity=0.305  Sum_probs=108.3

Q ss_pred             cEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEEC
Q 046844          595 QVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDL  674 (967)
Q Consensus       595 ~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  674 (967)
                      ..+.+..+.+++..+.  ..+.  +|+.|++++|.+. .++.  +..+++|++|++++|++++..+  +..+++|++|++
T Consensus        27 ~~~~l~~~~~~~~~~~--~~l~--~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l   97 (291)
T 1h6t_A           27 IKDNLKKKSVTDAVTQ--NELN--SIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL   97 (291)
T ss_dssp             HHHHTTCSCTTSEECH--HHHH--TCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             HHHHhcCCCcccccch--hhcC--cccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence            3344555555432222  1222  5666666666665 3432  5555666666666666665433  556666666666


Q ss_pred             CCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccccc
Q 046844          675 RSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNH  754 (967)
Q Consensus       675 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~  754 (967)
                      ++|++++. | .+..+++|++|++++|++++.    ..+..+                                      
T Consensus        98 ~~n~l~~~-~-~l~~l~~L~~L~L~~n~i~~~----~~l~~l--------------------------------------  133 (291)
T 1h6t_A           98 DENKVKDL-S-SLKDLKKLKSLSLEHNGISDI----NGLVHL--------------------------------------  133 (291)
T ss_dssp             CSSCCCCG-G-GGTTCTTCCEEECTTSCCCCC----GGGGGC--------------------------------------
T ss_pred             CCCcCCCC-h-hhccCCCCCEEECCCCcCCCC----hhhcCC--------------------------------------
Confidence            66666552 2 255555555555555555432    123333                                      


Q ss_pred             ccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCC
Q 046844          755 LGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKE  834 (967)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~  834 (967)
                                                    +.|+.|++++|++++.  ..++.+++|+.|+|++|++++..|  ++.+++
T Consensus       134 ------------------------------~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~  179 (291)
T 1h6t_A          134 ------------------------------PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK  179 (291)
T ss_dssp             ------------------------------TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred             ------------------------------CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCc
Confidence                                          4455556666665544  346666777777777777765444  667777


Q ss_pred             CCeEeCcCccccccCCccccCCCCCCeEEccCCcccc
Q 046844          835 IESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG  871 (967)
Q Consensus       835 L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g  871 (967)
                      |+.|++++|++++. | .+..++.|+.|++++|+++.
T Consensus       180 L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          180 LQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             cCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            77777777777653 3 36667777777777777655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=8.1e-18  Score=172.25  Aligned_cols=146  Identities=22%  Similarity=0.253  Sum_probs=122.0

Q ss_pred             CCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCE
Q 046844          592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV  671 (967)
Q Consensus       592 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  671 (967)
                      ++++.|++++|++++..+..+....  +|++|+|++|++++..|.. |.++++|++|+|++|+|+...+..|..+++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~--~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYK--KLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL  108 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCT--TCCEEECCSSCCCEECTTT-TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCC--CCCEEECCCCcCCCcCHHH-hhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence            4678888888888755555665555  8888888888888555665 888899999999999999777777888999999


Q ss_pred             EECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHh
Q 046844          672 LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMM  742 (967)
Q Consensus       672 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~  742 (967)
                      |+|++|++++..|..|.++++|++|+|++|++++..  +..+..+++|+.|++++|++.+.+...|+..++
T Consensus       109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l  177 (220)
T 2v9t_B          109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA--KGTFSPLRAIQTMHLAQNPFICDCHLKWLADYL  177 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred             EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC--HHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHH
Confidence            999999999988889999999999999999998876  667888999999999999999999888875544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=4.5e-18  Score=188.69  Aligned_cols=178  Identities=25%  Similarity=0.242  Sum_probs=126.4

Q ss_pred             cEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCC-CCCcccEEeCCCCccCCCCcccccCCCCCCEEE
Q 046844          595 QVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFP-GDCGLQILDLSGNQLQGVVPKSLANCNMLQVLD  673 (967)
Q Consensus       595 ~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  673 (967)
                      +.+++++++++ .+|..+.    ..++.|+|++|++++ ++...|. .+++|++|+|++|+|++..+..|.++++|+.|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~----~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP----SYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC----TTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEEEeCCCCcC-ccCccCC----CCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence            57888888887 5776542    267888888888874 4444366 777888888888888877777778888888888


Q ss_pred             CCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccc
Q 046844          674 LRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVN  753 (967)
Q Consensus       674 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~  753 (967)
                      |++|+|++..+..|.++++|++|+|++|++++..  |..+..+++|+.|+|++|+++                       
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L~~N~l~-----------------------  149 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD--RNAFEDMAQLQKLYLSQNQIS-----------------------  149 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCC-----------------------
T ss_pred             CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEEC--HHHhCCcccCCEEECCCCcCC-----------------------
Confidence            8888887777777777777777777777777665  556666666666666555554                       


Q ss_pred             cccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccc---cCCCCCcEEECCCCCCcccCCcccc
Q 046844          754 HLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEM---GRFRSLYALNMSHNALTGSIPSSFG  830 (967)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~---~~l~~L~~L~Ls~N~l~g~ip~~~~  830 (967)
                                                                   +..+..|   +.+++|+.|||++|+|++..+..+.
T Consensus       150 ---------------------------------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  184 (361)
T 2xot_A          150 ---------------------------------------------RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ  184 (361)
T ss_dssp             ---------------------------------------------SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHH
T ss_pred             ---------------------------------------------eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhh
Confidence                                                         2222222   5678888899999998876667777


Q ss_pred             CCCC--CCeEeCcCcccccc
Q 046844          831 NLKE--IESLDLSMNNLSGK  848 (967)
Q Consensus       831 ~l~~--L~~LdLs~N~l~g~  848 (967)
                      .++.  ++.|+|++|.+...
T Consensus       185 ~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          185 KLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             HSCHHHHTTEECCSSCEECC
T ss_pred             hccHhhcceEEecCCCccCC
Confidence            7776  47888888888753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.6e-17  Score=170.03  Aligned_cols=80  Identities=23%  Similarity=0.366  Sum_probs=50.1

Q ss_pred             cEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccC
Q 046844          621 EVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRS  700 (967)
Q Consensus       621 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  700 (967)
                      +.++++++.++ .+|.. +.  ++|++|++++|+|++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus        14 ~~v~c~~~~l~-~iP~~-l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTN-LP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSS-CC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCc-cC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            46777777776 66655 22  4566666666666666555666666666666666666665565665555555555555


Q ss_pred             Cccc
Q 046844          701 NNFS  704 (967)
Q Consensus       701 N~l~  704 (967)
                      |+++
T Consensus        90 N~l~   93 (220)
T 2v9t_B           90 NKIT   93 (220)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            5554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=3.9e-18  Score=200.42  Aligned_cols=192  Identities=20%  Similarity=0.282  Sum_probs=137.5

Q ss_pred             CCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCE
Q 046844          592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV  671 (967)
Q Consensus       592 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  671 (967)
                      ..+..+.++.+.+.+.++.  ..+.  +|+.|++++|.+. .+|.  |..+++|+.|+|++|++++..|  +..+++|+.
T Consensus        21 ~~l~~l~l~~~~i~~~~~~--~~L~--~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~   91 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVTQ--NELN--SIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW   91 (605)
T ss_dssp             HHHHHHHTTCSCTTSEECH--HHHT--TCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred             HHHHHHhccCCCcccccch--hcCC--CCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence            3455667777777644432  2333  7888888888887 5553  7778888888888888886655  778888888


Q ss_pred             EECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcc
Q 046844          672 LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSE  751 (967)
Q Consensus       672 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~  751 (967)
                      |+|++|++++. | .+..+++|+.|+|++|++++.    ..+..+++|+.|+|++|++++. + .               
T Consensus        92 L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~l-~-~---------------  148 (605)
T 1m9s_A           92 LFLDENKIKDL-S-SLKDLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI-T-V---------------  148 (605)
T ss_dssp             EECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCCC----GGGGGCTTCSEEECCSSCCCCC-G-G---------------
T ss_pred             EECcCCCCCCC-h-hhccCCCCCEEEecCCCCCCC----ccccCCCccCEEECCCCccCCc-h-h---------------
Confidence            88888888763 3 577788888888888888763    3467777888888888877653 1 0               


Q ss_pred             cccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccC
Q 046844          752 VNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGN  831 (967)
Q Consensus       752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  831 (967)
                                                   ...++.|+.|+|++|++++.+|  ++.+++|+.|+|++|++++. | .++.
T Consensus       149 -----------------------------l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~  195 (605)
T 1m9s_A          149 -----------------------------LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAG  195 (605)
T ss_dssp             -----------------------------GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTT
T ss_pred             -----------------------------hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHcc
Confidence                                         1135667777788777777666  77777777888888777763 3 4777


Q ss_pred             CCCCCeEeCcCcccccc
Q 046844          832 LKEIESLDLSMNNLSGK  848 (967)
Q Consensus       832 l~~L~~LdLs~N~l~g~  848 (967)
                      +++|+.|+|++|.+++.
T Consensus       196 l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          196 LKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CTTCSEEECCSEEEECC
T ss_pred             CCCCCEEEccCCcCcCC
Confidence            77777888887777765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=2.3e-17  Score=170.16  Aligned_cols=80  Identities=23%  Similarity=0.240  Sum_probs=43.2

Q ss_pred             cEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccC
Q 046844          621 EVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRS  700 (967)
Q Consensus       621 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  700 (967)
                      +.++.+++.+. .+|.. +.  ++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus        22 ~~v~c~~~~l~-~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAG-IP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TEEECTTSCCS-SCCSC-CC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEeEccCCCcC-ccCCC-CC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            44555555554 55544 21  4555666666666555555555666666666666666554444455555555554444


Q ss_pred             Cccc
Q 046844          701 NNFS  704 (967)
Q Consensus       701 N~l~  704 (967)
                      |+++
T Consensus        98 N~l~  101 (229)
T 3e6j_A           98 NQLT  101 (229)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            4444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=7.9e-18  Score=186.74  Aligned_cols=127  Identities=30%  Similarity=0.296  Sum_probs=68.1

Q ss_pred             eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccc-cCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCC
Q 046844          573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLI-TKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLS  651 (967)
Q Consensus       573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~  651 (967)
                      ++.+++.++. +|..+.  ..++.|+|++|++++..+..+. ...  +|+.|+|++|++++ ++...|..+++|++|+|+
T Consensus        23 l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~--~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           23 LSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLT--NLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             EECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCT--TCCEEECCSSCCCE-ECTTTTTTCTTCCEEECC
T ss_pred             EEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhccc--ccCEEECCCCcCCc-cChhhccCCCCCCEEECC
Confidence            5555555543 333322  2355566666665543333332 332  56666666666653 332225555566666666


Q ss_pred             CCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccce
Q 046844          652 GNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSG  705 (967)
Q Consensus       652 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  705 (967)
                      +|+|++..+..|..+++|++|+|++|+|++..|..|.++++|+.|+|++|++++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence            666655555555556666666666666655555555556666666666665554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=5e-17  Score=167.58  Aligned_cols=137  Identities=24%  Similarity=0.248  Sum_probs=121.4

Q ss_pred             CCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCE
Q 046844          592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV  671 (967)
Q Consensus       592 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  671 (967)
                      ++|++|++++|++++..|..+....  +|++|+|++|++. .+|...|..+++|++|+|++|+|++..+..|..+++|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  116 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLI--NLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE  116 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCT--TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCcc--CCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence            6788999999999877777777665  8999999999997 677666899999999999999999888888999999999


Q ss_pred             EECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCc
Q 046844          672 LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLS  734 (967)
Q Consensus       672 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p  734 (967)
                      |++++|+|+. +|..+..+++|++|+|++|++++..  +..+..+++|+.|++++|+++|.++
T Consensus       117 L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          117 LFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIP--HGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             EECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             EeccCCcccc-cCcccccCCCCCEEECCCCcCCccC--HHHHhCCCCCCEEEeeCCCccCCcc
Confidence            9999999994 7888899999999999999999775  5678899999999999999999987

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=8.3e-18  Score=180.28  Aligned_cols=188  Identities=19%  Similarity=0.249  Sum_probs=147.8

Q ss_pred             eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCC
Q 046844          573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG  652 (967)
Q Consensus       573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~  652 (967)
                      +.+..+.+.+..+  +..+++|+.|++++|.+. .++. +..+.  +|++|++++|++++ ++.  +..+++|++|++++
T Consensus        29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~~~~-~~~l~--~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLP--NVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCC-CCTT-GGGCT--TCCEEECCSSCCCC-CGG--GTTCTTCCEEECCS
T ss_pred             HHhcCCCcccccc--hhhcCcccEEEccCCCcc-cChh-HhcCC--CCCEEEccCCccCC-Ccc--cccCCCCCEEECCC
Confidence            4556666665443  456889999999999998 4554 55555  99999999999995 443  78899999999999


Q ss_pred             CccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCc
Q 046844          653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGR  732 (967)
Q Consensus       653 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~  732 (967)
                      |++++.  ..+..+++|+.|++++|++++.  ..+..+++|+.|++++|++++.    ..+..+                
T Consensus       100 n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~----~~l~~l----------------  155 (291)
T 1h6t_A          100 NKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRL----------------  155 (291)
T ss_dssp             SCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC----GGGGGC----------------
T ss_pred             CcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc----hhhccC----------------
Confidence            999873  3499999999999999999985  4688999999999999998753    233333                


Q ss_pred             CcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCc
Q 046844          733 LSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLY  812 (967)
Q Consensus       733 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~  812 (967)
                                                                          +.|+.|++++|++++..|  ++.+++|+
T Consensus       156 ----------------------------------------------------~~L~~L~L~~N~l~~~~~--l~~l~~L~  181 (291)
T 1h6t_A          156 ----------------------------------------------------TKLDTLSLEDNQISDIVP--LAGLTKLQ  181 (291)
T ss_dssp             ----------------------------------------------------TTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             ----------------------------------------------------CCCCEEEccCCccccchh--hcCCCccC
Confidence                                                                345556666666665544  78888899


Q ss_pred             EEECCCCCCcccCCccccCCCCCCeEeCcCccccccC
Q 046844          813 ALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKI  849 (967)
Q Consensus       813 ~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~i  849 (967)
                      .|+|++|++++ +|. +..+++|+.||+++|.++...
T Consensus       182 ~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          182 NLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             EEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred             EEECCCCcCCC-Chh-hccCCCCCEEECcCCcccCCc
Confidence            99999999986 454 888999999999999988643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=6.3e-18  Score=198.63  Aligned_cols=221  Identities=16%  Similarity=0.133  Sum_probs=173.6

Q ss_pred             eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCC
Q 046844          573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG  652 (967)
Q Consensus       573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~  652 (967)
                      +.+..+.+....+  +..+++|+.|++++|.+. .+| .+..+.  +|+.|+|++|.+++..|   +..+++|+.|+|++
T Consensus        26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~--~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLP--NVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCT--TCCEEECTTSCCCCCGG---GGGCTTCCEEECCS
T ss_pred             HhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCC--CCCEEEeeCCCCCCChh---hccCCCCCEEECcC
Confidence            5666777766554  467889999999999997 455 366655  99999999999985443   78899999999999


Q ss_pred             CccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCc
Q 046844          653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGR  732 (967)
Q Consensus       653 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~  732 (967)
                      |++++.  ..+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++++.    ..+..+++|+.|+|++|++++.
T Consensus        97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSCCCCC
T ss_pred             CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcCCcCCCc
Confidence            999863  3689999999999999999984  4588999999999999999874    4678899999999999999876


Q ss_pred             CcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCc
Q 046844          733 LSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLY  812 (967)
Q Consensus       733 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~  812 (967)
                      .|  +                                            ..++.|+.|+|++|++++. | .++.+++|+
T Consensus       169 ~~--l--------------------------------------------~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~  200 (605)
T 1m9s_A          169 VP--L--------------------------------------------AGLTKLQNLYLSKNHISDL-R-ALAGLKNLD  200 (605)
T ss_dssp             GG--G--------------------------------------------TTCTTCCEEECCSSCCCBC-G-GGTTCTTCS
T ss_pred             hh--h--------------------------------------------ccCCCCCEEECcCCCCCCC-h-HHccCCCCC
Confidence            55  1                                            1467899999999999975 4 599999999


Q ss_pred             EEECCCCCCcccCCcccc-------------CCCCCCeEeCcCccccccCCccccCCCC
Q 046844          813 ALNMSHNALTGSIPSSFG-------------NLKEIESLDLSMNNLSGKIPAQLASLNF  858 (967)
Q Consensus       813 ~L~Ls~N~l~g~ip~~~~-------------~l~~L~~LdLs~N~l~g~ip~~l~~l~~  858 (967)
                      .|+|++|.+++.....+.             .....+.+...++...|.+|..+..+..
T Consensus       201 ~L~L~~N~l~~~p~~~~~~l~~~~~l~~l~g~~~~~~~i~~~g~~~~~~i~~~l~~~~~  259 (605)
T 1m9s_A          201 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN  259 (605)
T ss_dssp             EEECCSEEEECCCCCCCSSCEEECCCBCSSSCBCCCSEESTTCEEETTEEECCCSSCCS
T ss_pred             EEEccCCcCcCCcccccccEEecccccccCCCCcCchhcccCCcccCCcceeccccccc
Confidence            999999999876333222             2333445555556666666666655543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=1.1e-16  Score=159.97  Aligned_cols=141  Identities=26%  Similarity=0.306  Sum_probs=127.1

Q ss_pred             cEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEEC
Q 046844          595 QVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDL  674 (967)
Q Consensus       595 ~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  674 (967)
                      +.+++++|.++ .+|..+..    +|++|++++|++++..+...|..+++|++|+|++|+|++..|..|.++++|++|+|
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~----~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL----HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT----TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCcC-cCccCCCC----CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            78999999996 78876532    89999999999986555555889999999999999999999999999999999999


Q ss_pred             CCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHh
Q 046844          675 RSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMM  742 (967)
Q Consensus       675 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~  742 (967)
                      ++|+|++..|..|.++++|++|+|++|++++..  |..+..+++|+.|++++|+++|.++..++..++
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l  151 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWL  151 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC--HHHhhcCCCCCEEEeCCCCccCcCcchHHHHHH
Confidence            999999999999999999999999999999988  889999999999999999999999987775443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=1.8e-19  Score=210.57  Aligned_cols=89  Identities=29%  Similarity=0.351  Sum_probs=61.5

Q ss_pred             CCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccC-CccccCCCCCCeE
Q 046844          784 PNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKI-PAQLASLNFLSVL  862 (967)
Q Consensus       784 ~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~l  862 (967)
                      ++.|+.|+|++|+++ .+|..|+.+++|+.|+|++|+|++ +| .|+++++|+.|||++|+|++.+ |..+..++.|+.|
T Consensus       462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence            445666666666666 666677777777777777777775 56 6777777777777777777666 7777777777777


Q ss_pred             EccCCccccCCCC
Q 046844          863 NLSYNNLVGKIPT  875 (967)
Q Consensus       863 ~ls~N~l~g~ip~  875 (967)
                      ++++|+++|.+|.
T Consensus       539 ~L~~N~l~~~~~~  551 (567)
T 1dce_A          539 NLQGNSLCQEEGI  551 (567)
T ss_dssp             ECTTSGGGGSSSC
T ss_pred             EecCCcCCCCccH
Confidence            7777777766653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=5.8e-19  Score=206.27  Aligned_cols=193  Identities=18%  Similarity=0.170  Sum_probs=161.2

Q ss_pred             CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCc-------------cCCCCcccccCCCCCCEEE-CCCCccccccc
Q 046844          619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ-------------LQGVVPKSLANCNMLQVLD-LRSNYISDNFP  684 (967)
Q Consensus       619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~-------------l~~~~p~~~~~l~~L~~L~-Ls~N~l~~~~p  684 (967)
                      +|+.|+|++|.++ .+|.. ++.+++|+.|++++|.             +.+..|..+..+++|+.|+ ++.|.+.....
T Consensus       350 ~L~~L~Ls~n~L~-~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~  427 (567)
T 1dce_A          350 QLFRCELSVEKST-VLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS  427 (567)
T ss_dssp             TSSSCCCCHHHHH-HHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             cceeccCChhhHH-hhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence            8999999999998 88988 8889999999998875             5677888899999999999 77776543221


Q ss_pred             hh-----hhc--CCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccc
Q 046844          685 CW-----LRN--ASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGI  757 (967)
Q Consensus       685 ~~-----l~~--l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~  757 (967)
                      ..     +..  ...|+.|+|++|++++.   |. +..+++|+.|+|++|+++ .+|..+                    
T Consensus       428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l---p~-~~~l~~L~~L~Ls~N~l~-~lp~~~--------------------  482 (567)
T 1dce_A          428 KFLLENSVLKMEYADVRVLHLAHKDLTVL---CH-LEQLLLVTHLDLSHNRLR-ALPPAL--------------------  482 (567)
T ss_dssp             HHHHHHHHHHHHHTTCSEEECTTSCCSSC---CC-GGGGTTCCEEECCSSCCC-CCCGGG--------------------
T ss_pred             hhhhcccccccCccCceEEEecCCCCCCC---cC-ccccccCcEeecCccccc-ccchhh--------------------
Confidence            11     111  23699999999999984   66 899999999999999998 677433                    


Q ss_pred             cCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccC-CccccCCCCCC
Q 046844          758 EMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSI-PSSFGNLKEIE  836 (967)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~i-p~~~~~l~~L~  836 (967)
                                              ..++.|+.|+|++|++++ +| .++.+++|+.|+|++|+|++.+ |..|+.+++|+
T Consensus       483 ------------------------~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~  536 (567)
T 1dce_A          483 ------------------------AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV  536 (567)
T ss_dssp             ------------------------GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             ------------------------hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC
Confidence                                    257789999999999997 78 8999999999999999999987 99999999999


Q ss_pred             eEeCcCccccccCCcc---ccCCCCCCeEEc
Q 046844          837 SLDLSMNNLSGKIPAQ---LASLNFLSVLNL  864 (967)
Q Consensus       837 ~LdLs~N~l~g~ip~~---l~~l~~L~~l~l  864 (967)
                      .|||++|.+++.+|..   +..++.|++||+
T Consensus       537 ~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          537 LLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999999999987643   345889999875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=2.9e-17  Score=173.13  Aligned_cols=168  Identities=21%  Similarity=0.304  Sum_probs=97.2

Q ss_pred             CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEc
Q 046844          619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL  698 (967)
Q Consensus       619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  698 (967)
                      .+..+++++|.++ .++ . +..+++|++|++++|+++.. | .+..+++|+.|++++|++++..+  +.++++|+.|++
T Consensus        20 ~l~~l~l~~~~i~-~~~-~-~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVT-DLV-S-QKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTT-SEE-C-HHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCcc-ccc-c-hhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            4555566666665 233 1 45555666666666666532 3 45556666666666666665443  555666666666


Q ss_pred             cCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEcccee
Q 046844          699 RSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEI  778 (967)
Q Consensus       699 ~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  778 (967)
                      ++|++++.   |... . ++                                                            
T Consensus        93 ~~N~l~~l---~~~~-~-~~------------------------------------------------------------  107 (263)
T 1xeu_A           93 NRNRLKNL---NGIP-S-AC------------------------------------------------------------  107 (263)
T ss_dssp             CSSCCSCC---TTCC-C-SS------------------------------------------------------------
T ss_pred             CCCccCCc---Cccc-c-Cc------------------------------------------------------------
Confidence            66655543   1111 1 34                                                            


Q ss_pred             eecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCC
Q 046844          779 KLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNF  858 (967)
Q Consensus       779 ~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~  858 (967)
                              |+.|++++|++++. | .++.+++|+.|+|++|++++. | .++.+++|+.|||++|++++.  ..+..++.
T Consensus       108 --------L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~  173 (263)
T 1xeu_A          108 --------LSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKK  173 (263)
T ss_dssp             --------CCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCC
T ss_pred             --------ccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCC
Confidence                    45555555555542 2 366666666777777766653 3 466666777777777776665  45666666


Q ss_pred             CCeEEccCCccccC
Q 046844          859 LSVLNLSYNNLVGK  872 (967)
Q Consensus       859 L~~l~ls~N~l~g~  872 (967)
                      |+.|++++|.+++.
T Consensus       174 L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          174 VNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCEEEEEEEEEECC
T ss_pred             CCEEeCCCCcccCC
Confidence            77777777766654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=1.8e-17  Score=200.10  Aligned_cols=192  Identities=20%  Similarity=0.176  Sum_probs=113.4

Q ss_pred             EEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCC
Q 046844          597 LDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRS  676 (967)
Q Consensus       597 L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  676 (967)
                      ++++.|.+. ..|..+....  .|+.|+|++|.+. .+|.. +..+++|++|+|++|+|+ .+|..|..+++|++|||++
T Consensus       206 ~~~~~n~~~-~~~~~~~~l~--~L~~L~Ls~n~l~-~l~~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~  279 (727)
T 4b8c_D          206 DDDIENRMV-MPKDSKYDDQ--LWHALDLSNLQIF-NISAN-IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH  279 (727)
T ss_dssp             -----------------CCC--CCCEEECTTSCCS-CCCGG-GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTT
T ss_pred             cccccccee-cChhhhccCC--CCcEEECCCCCCC-CCChh-hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcC
Confidence            344455554 4455555554  7888888888887 77776 337788899999999988 7788889999999999999


Q ss_pred             CccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccccccc
Q 046844          677 NYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLG  756 (967)
Q Consensus       677 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~  756 (967)
                      |+|+ .+|..|+++++|++|+|++|.|+. +  |..+..+++|+.|+|++|+++|.+|..+.....              
T Consensus       280 N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-l--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~--------------  341 (727)
T 4b8c_D          280 NRLT-SLPAELGSCFQLKYFYFFDNMVTT-L--PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV--------------  341 (727)
T ss_dssp             SCCS-SCCSSGGGGTTCSEEECCSSCCCC-C--CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH--------------
T ss_pred             CcCC-ccChhhcCCCCCCEEECCCCCCCc-c--ChhhhcCCCccEEeCCCCccCCCChHHHhhcch--------------
Confidence            9998 568889999999999999999873 3  888999999999999999999988876531100              


Q ss_pred             ccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCC--------CCcccCCcc
Q 046844          757 IEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHN--------ALTGSIPSS  828 (967)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N--------~l~g~ip~~  828 (967)
                                                   ....++|++|.++|.+|.++      +.|++++|        .+++.++..
T Consensus       342 -----------------------------~~~~l~l~~N~l~~~~p~~l------~~l~l~~n~~~~~~~~~l~~~~~~~  386 (727)
T 4b8c_D          342 -----------------------------TGLIFYLRDNRPEIPLPHER------RFIEINTDGEPQREYDSLQQSTEHL  386 (727)
T ss_dssp             -----------------------------HHHHHHHHHCCCCCCCCCC--------------------------------
T ss_pred             -----------------------------hhhHHhhccCcccCcCcccc------ceeEeecccccccccCCccccccch
Confidence                                         01125688888888888754      45666766        455555555


Q ss_pred             ccCCCCCCeEeCcCccccc
Q 046844          829 FGNLKEIESLDLSMNNLSG  847 (967)
Q Consensus       829 ~~~l~~L~~LdLs~N~l~g  847 (967)
                      +.++..++...+++|-+.+
T Consensus       387 ~~~l~~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          387 ATDLAKRTFTVLSYNTLCQ  405 (727)
T ss_dssp             ---------------CCCG
T ss_pred             hhcccccceeeeecccccc
Confidence            6677777777777777764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=5e-17  Score=163.46  Aligned_cols=155  Identities=13%  Similarity=0.194  Sum_probs=95.9

Q ss_pred             CCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCC
Q 046844          640 PGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLL  719 (967)
Q Consensus       640 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L  719 (967)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|++++..  |..+..+++|
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDK--IPNLSGLTSL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGG--SCCCTTCTTC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCccc--ChhhcCCCCC
Confidence            34566777777777776 334 46667777777777775543  235666677777777777666544  4555555555


Q ss_pred             cEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccC
Q 046844          720 QIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEG  799 (967)
Q Consensus       720 ~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g  799 (967)
                      +.|++++|+                                                                    +++
T Consensus       115 ~~L~Ls~n~--------------------------------------------------------------------i~~  126 (197)
T 4ezg_A          115 TLLDISHSA--------------------------------------------------------------------HDD  126 (197)
T ss_dssp             CEEECCSSB--------------------------------------------------------------------CBG
T ss_pred             CEEEecCCc--------------------------------------------------------------------cCc
Confidence            555555554                                                                    444


Q ss_pred             CCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCcccc
Q 046844          800 PIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG  871 (967)
Q Consensus       800 ~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g  871 (967)
                      ..|..++.+++|+.|+|++|.+.+.+| .++.+++|+.|++++|++++ +| .+..++.|+.|++++|++.+
T Consensus       127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            555556666777777777776333455 46777777777777777765 33 56677777777777777643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=5.1e-18  Score=204.78  Aligned_cols=224  Identities=17%  Similarity=0.165  Sum_probs=124.1

Q ss_pred             CCCcEEEcccCcCCCCCCcccccCC---CCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCC
Q 046844          592 TNFQVLDLSNNNLSGTIPACLITKS---SSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM  668 (967)
Q Consensus       592 ~~L~~L~Ls~N~l~~~~p~~~~~~~---~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  668 (967)
                      +.++.|+|.+|.+.. ++..+....   ...+..++++.|.+. ..|.. |..+..|+.|+|++|++. .+|..+..+++
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~-~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDS-KYDDQLWHALDLSNLQIF-NISANIFKYDF  248 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhh-hccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence            345666776666653 232211110   001222333444443 33444 889999999999999999 66777779999


Q ss_pred             CCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCC
Q 046844          669 LQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKS  748 (967)
Q Consensus       669 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~  748 (967)
                      |++|+|++|+|+ .+|..|+++++|++|+|++|+|+ .+  |..+..+++|+.|+|++|.++ .+|..+           
T Consensus       249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l--p~~~~~l~~L~~L~L~~N~l~-~lp~~~-----------  312 (727)
T 4b8c_D          249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL--PAELGSCFQLKYFYFFDNMVT-TLPWEF-----------  312 (727)
T ss_dssp             CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC--CSSGGGGTTCSEEECCSSCCC-CCCSST-----------
T ss_pred             CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc--ChhhcCCCCCCEEECCCCCCC-ccChhh-----------
Confidence            999999999999 68889999999999999999999 44  999999999999999999986 666322           


Q ss_pred             CcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCC-cEEECCCCCCcccCCc
Q 046844          749 GSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSL-YALNMSHNALTGSIPS  827 (967)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L-~~L~Ls~N~l~g~ip~  827 (967)
                                                       ..++.|+.|+|++|+|+|.+|..++.+... ..|+|++|.++|.+|.
T Consensus       313 ---------------------------------~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          313 ---------------------------------GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             ---------------------------------TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             ---------------------------------hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence                                             256789999999999999999988765332 3478999999999997


Q ss_pred             cccCCCCCCeEeCcCc--------cccccCCccccCCCCCCeEEccCCccccCCC
Q 046844          828 SFGNLKEIESLDLSMN--------NLSGKIPAQLASLNFLSVLNLSYNNLVGKIP  874 (967)
Q Consensus       828 ~~~~l~~L~~LdLs~N--------~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip  874 (967)
                      .      |+.|++++|        .|.+.++..+.++..+....+++|-+.+...
T Consensus       360 ~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~  408 (727)
T 4b8c_D          360 E------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA  408 (727)
T ss_dssp             C-----------------------------------------------CCCGGGC
T ss_pred             c------cceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence            5      456667777        5666666667778888889999999875544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=5.1e-17  Score=171.25  Aligned_cols=171  Identities=20%  Similarity=0.272  Sum_probs=132.8

Q ss_pred             cCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCC
Q 046844          590 KATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML  669 (967)
Q Consensus       590 ~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  669 (967)
                      .+.++..+++++|.+++ ++ .+..+.  +|+.|++++|.++ .+| . +..+++|++|+|++|++++..+  +..+++|
T Consensus        17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~--~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L   87 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD-LV-SQKELS--GVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKL   87 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS-EE-CHHHHT--TCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSC
T ss_pred             HHHHHHHHHhcCCCccc-cc-chhhcC--cCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh--hccCCCC
Confidence            45678888999999984 44 355555  9999999999998 677 3 8889999999999999997655  9999999


Q ss_pred             CEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCC
Q 046844          670 QVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSG  749 (967)
Q Consensus       670 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~  749 (967)
                      +.|++++|++++..+  +.. ++|+.|++++|++++.   + .+..+++|+.||+++|++                    
T Consensus        88 ~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~---~-~l~~l~~L~~L~Ls~N~i--------------------  140 (263)
T 1xeu_A           88 EELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT---D-SLIHLKNLEILSIRNNKL--------------------  140 (263)
T ss_dssp             CEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS---G-GGTTCTTCCEEECTTSCC--------------------
T ss_pred             CEEECCCCccCCcCc--ccc-CcccEEEccCCccCCC---h-hhcCcccccEEECCCCcC--------------------
Confidence            999999999998543  233 9999999999999874   2 355555555555555554                    


Q ss_pred             cccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccc
Q 046844          750 SEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSF  829 (967)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~  829 (967)
                                                                      ++. | .++.+++|+.|+|++|++++.  ..+
T Consensus       141 ------------------------------------------------~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l  168 (263)
T 1xeu_A          141 ------------------------------------------------KSI-V-MLGFLSKLEVLDLHGNEITNT--GGL  168 (263)
T ss_dssp             ------------------------------------------------CBC-G-GGGGCTTCCEEECTTSCCCBC--TTS
T ss_pred             ------------------------------------------------CCC-h-HHccCCCCCEEECCCCcCcch--HHh
Confidence                                                            432 3 466777788888888888765  667


Q ss_pred             cCCCCCCeEeCcCcccccc
Q 046844          830 GNLKEIESLDLSMNNLSGK  848 (967)
Q Consensus       830 ~~l~~L~~LdLs~N~l~g~  848 (967)
                      +.+++|+.||+++|.+++.
T Consensus       169 ~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          169 TRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTCCCCCEEEEEEEEEECC
T ss_pred             ccCCCCCEEeCCCCcccCC
Confidence            7888888888888888765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=2.7e-16  Score=158.12  Aligned_cols=151  Identities=15%  Similarity=0.199  Sum_probs=119.4

Q ss_pred             CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEc
Q 046844          619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL  698 (967)
Q Consensus       619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  698 (967)
                      +|+.|++++|.++ .+| . +..+++|++|++++|.++.  +..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus        45 ~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           45 SLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             TCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            8999999999998 777 4 8889999999999997763  357899999999999999999988999999999999999


Q ss_pred             cCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEcccee
Q 046844          699 RSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEI  778 (967)
Q Consensus       699 ~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  778 (967)
                      ++|++++..  |..+..+++|+.|++++|+                                                  
T Consensus       120 s~n~i~~~~--~~~l~~l~~L~~L~L~~n~--------------------------------------------------  147 (197)
T 4ezg_A          120 SHSAHDDSI--LTKINTLPKVNSIDLSYNG--------------------------------------------------  147 (197)
T ss_dssp             CSSBCBGGG--HHHHTTCSSCCEEECCSCT--------------------------------------------------
T ss_pred             cCCccCcHh--HHHHhhCCCCCEEEccCCC--------------------------------------------------
Confidence            999999755  5555566666666555554                                                  


Q ss_pred             eecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccc
Q 046844          779 KLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSG  847 (967)
Q Consensus       779 ~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g  847 (967)
                                        +.+.+| .++.+++|+.|++++|++++ +| .+..+++|+.|++++|++.+
T Consensus       148 ------------------~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          148 ------------------AITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ------------------BCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             ------------------CccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence                              223344 46777888888888888875 44 67788888888888888764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=6.1e-17  Score=161.89  Aligned_cols=93  Identities=20%  Similarity=0.283  Sum_probs=80.9

Q ss_pred             cCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeE
Q 046844          783 VPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVL  862 (967)
Q Consensus       783 ~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l  862 (967)
                      .++.|+.|+|++|++++.+|..|+.+++|++|+|++|++++..|..|+++++|+.|||++|++++.+|..+..++.|++|
T Consensus        52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  131 (192)
T 1w8a_A           52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence            35567778888888888888888999999999999999998888889999999999999999999999999999999999


Q ss_pred             EccCCccccCCCC
Q 046844          863 NLSYNNLVGKIPT  875 (967)
Q Consensus       863 ~ls~N~l~g~ip~  875 (967)
                      ++++|.++|..|.
T Consensus       132 ~L~~N~l~c~c~l  144 (192)
T 1w8a_A          132 NLASNPFNCNCHL  144 (192)
T ss_dssp             ECTTCCBCCSGGG
T ss_pred             EeCCCCccCcCcc
Confidence            9999999887763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=1.2e-15  Score=152.46  Aligned_cols=140  Identities=21%  Similarity=0.253  Sum_probs=124.9

Q ss_pred             cEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEEC
Q 046844          595 QVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDL  674 (967)
Q Consensus       595 ~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  674 (967)
                      +.+++++|.++ .+|..+.    ++|++|++++|+++ .+|.. |..+++|++|+|++|+|++..+..|.++++|++|+|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~----~~l~~L~L~~n~i~-~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L   85 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP----RDVTELYLDGNQFT-LVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL   85 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC----TTCCEEECCSSCCC-SCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCCC-cCCCCCC----CCCCEEECCCCcCc-hhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence            57899999998 7887653    28999999999998 88865 999999999999999999988899999999999999


Q ss_pred             CCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhh
Q 046844          675 RSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMV  743 (967)
Q Consensus       675 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~  743 (967)
                      ++|+|+++.|..|.++++|++|+|++|++++..  +..+..+++|+.|++++|++.+.+...|+..+..
T Consensus        86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~  152 (193)
T 2wfh_A           86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP--EGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVK  152 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred             CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC--hhhhhcCccccEEEeCCCCeecCCcCHHHHHHHH
Confidence            999999999999999999999999999999775  5678899999999999999999999888765543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=1.4e-14  Score=142.82  Aligned_cols=135  Identities=21%  Similarity=0.206  Sum_probs=118.3

Q ss_pred             CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844          593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL  672 (967)
Q Consensus       593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  672 (967)
                      +.+.+++++|+++ .+|..+.    ++|+.|++++|+++ .+|...|..+++|++|++++|++++..+..|..+++|++|
T Consensus         8 ~~~~l~~~~~~l~-~~p~~~~----~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   81 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVPTGIP----SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL   81 (177)
T ss_dssp             ETTEEECCSSCCS-SCCTTCC----TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEEecCCCCc-cCCCCCC----CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence            3578899999987 6775542    28999999999998 5665558999999999999999998888889999999999


Q ss_pred             ECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcH
Q 046844          673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQ  735 (967)
Q Consensus       673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~  735 (967)
                      ++++|++++..+..+.++++|++|++++|++++..  +..+..+++|+.|++++|+++|.+|.
T Consensus        82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A           82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ECCCCCccccCHHHhhCCcccCEEECcCCcceEeC--HHHhcCCcccCEEEecCCCeeccCcc
Confidence            99999999988888999999999999999999764  55568899999999999999999983

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=1.2e-14  Score=142.03  Aligned_cols=84  Identities=20%  Similarity=0.202  Sum_probs=49.9

Q ss_pred             ceEEECCCCcccCCCcccccCCCCCcEEECCCCCCccc-CCccccCCCCCCeEeCcCccccccCC---ccccCCCCCCeE
Q 046844          787 FTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGS-IPSSFGNLKEIESLDLSMNNLSGKIP---AQLASLNFLSVL  862 (967)
Q Consensus       787 l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~-ip~~~~~l~~L~~LdLs~N~l~g~ip---~~l~~l~~L~~l  862 (967)
                      |+.|++++|++++.+|..++.+++|++|+|++|++++. .+..++.+++|+.||+++|.+++..+   ..+..++.|++|
T Consensus        73 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  152 (168)
T 2ell_A           73 LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL  152 (168)
T ss_dssp             CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred             CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence            34444444444444555555566666666666666653 22566666666666666666665544   356666667777


Q ss_pred             EccCCccc
Q 046844          863 NLSYNNLV  870 (967)
Q Consensus       863 ~ls~N~l~  870 (967)
                      ++++|.+.
T Consensus       153 ~l~~n~~~  160 (168)
T 2ell_A          153 DGYDREDQ  160 (168)
T ss_dssp             TTEETTSC
T ss_pred             cCCCCChh
Confidence            77666653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=8.6e-15  Score=139.78  Aligned_cols=129  Identities=22%  Similarity=0.184  Sum_probs=109.6

Q ss_pred             CCCCcEEEcccCcCC-CCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCC
Q 046844          591 ATNFQVLDLSNNNLS-GTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML  669 (967)
Q Consensus       591 ~~~L~~L~Ls~N~l~-~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  669 (967)
                      .++|+.|++++|.++ +.+|..+..+.  +|++|++++|.+++.  .. |..+++|++|++++|++++.+|..+..+++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~--~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFE--ELEFLSTINVGLTSI--AN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCT--TCCEEECTTSCCCCC--TT-CCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcC--CCcEEECcCCCCCCc--hh-hhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence            367899999999998 78888776665  899999999999854  33 8889999999999999998888888889999


Q ss_pred             CEEECCCCccccc-cchhhhcCCCCCEEEccCCccceecCCC---CCCCCCCCCcEEecCC
Q 046844          670 QVLDLRSNYISDN-FPCWLRNASSLQVLVLRSNNFSGHISCP---RNKVSWPLLQIVDLAC  726 (967)
Q Consensus       670 ~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~p---~~~~~l~~L~~Ldls~  726 (967)
                      ++|++++|++++. .+..+..+++|++|++++|++++..  +   ..+..+++|+.||+++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN--DYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST--THHHHHHHHCTTCCEETTBC
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH--HHHHHHHHHCCCcccccCCC
Confidence            9999999999885 4578899999999999999998763  3   3678889999999874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=4.3e-14  Score=141.07  Aligned_cols=110  Identities=26%  Similarity=0.329  Sum_probs=92.1

Q ss_pred             CCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCE
Q 046844          592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV  671 (967)
Q Consensus       592 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  671 (967)
                      ++|++|++++|+++ .+|..+....  +|+.|+|++|.++ .++...|.++++|++|+|++|+|++..|..|..+++|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~--~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~  106 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYK--HLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL  106 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCT--TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCcCc-hhHHHhhccc--CCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence            46788888888887 7777776665  8888888888888 455444888899999999999999888888889999999


Q ss_pred             EECCCCccccccchhhhcCCCCCEEEccCCccce
Q 046844          672 LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSG  705 (967)
Q Consensus       672 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  705 (967)
                      |+|++|+|++..+..|..+++|+.|+|++|++..
T Consensus       107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          107 LSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            9999999988777788889999999999998864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=1.3e-14  Score=141.63  Aligned_cols=133  Identities=22%  Similarity=0.131  Sum_probs=115.0

Q ss_pred             CCCCcEEEcccCcCC-CCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCC
Q 046844          591 ATNFQVLDLSNNNLS-GTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML  669 (967)
Q Consensus       591 ~~~L~~L~Ls~N~l~-~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  669 (967)
                      .++|+.|++++|+++ +.+|..+....  +|++|++++|.+++ + .. |..+++|++|++++|++++.+|..+..+++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~--~L~~L~l~~n~l~~-~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFV--NLEFLSLINVGLIS-V-SN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGG--GCCEEEEESSCCCC-C-SS-CCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCC--CCCEEeCcCCCCCC-h-hh-hccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            478999999999998 78888777665  89999999999985 4 33 8889999999999999998888888889999


Q ss_pred             CEEECCCCcccccc-chhhhcCCCCCEEEccCCccceecCCC---CCCCCCCCCcEEecCCccCc
Q 046844          670 QVLDLRSNYISDNF-PCWLRNASSLQVLVLRSNNFSGHISCP---RNKVSWPLLQIVDLACNKFS  730 (967)
Q Consensus       670 ~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~~p---~~~~~l~~L~~Ldls~N~l~  730 (967)
                      ++|++++|++++.. +..+..+++|++|++++|++++..  +   ..+..+++|+.||+++|.+.
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~--~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN--DYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST--THHHHHHTTCSSCCEETTEETTSC
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH--HHHHHHHHhCccCcEecCCCCChh
Confidence            99999999999853 378899999999999999998763  2   26888999999999999875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=4e-15  Score=162.78  Aligned_cols=102  Identities=19%  Similarity=0.237  Sum_probs=57.9

Q ss_pred             CCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCccc-EEeCCCCccCCCCcccccCCCCC
Q 046844          591 ATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQ-ILDLSGNQLQGVVPKSLANCNML  669 (967)
Q Consensus       591 ~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L  669 (967)
                      +++|+.+++++|+++..-+.+|..+.  +|+.++|.+| +. .|+..+|.++.+|+ .+++.+ .++.+.+.+|.+|++|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~--~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKK--YLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL  299 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCT--TCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCC--CCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence            55666666666666532233344443  5666666655 44 55555566666666 666655 5554555556666666


Q ss_pred             CEEECCCCccccccchhhhcCCCCCEEE
Q 046844          670 QVLDLRSNYISDNFPCWLRNASSLQVLV  697 (967)
Q Consensus       670 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  697 (967)
                      +.+++++|+++.+.+.+|.++++|+.++
T Consensus       300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          300 RYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CEEEeCCCccCccchhhhcCCcchhhhc
Confidence            6666666666655555566666665554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=1.2e-14  Score=138.88  Aligned_cols=80  Identities=21%  Similarity=0.247  Sum_probs=50.8

Q ss_pred             cceEEECCCCcccCCCcccccCCCCCcEEECCCCCCccc-CCccccCCCCCCeEeCcCccccccCC---ccccCCCCCCe
Q 046844          786 IFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGS-IPSSFGNLKEIESLDLSMNNLSGKIP---AQLASLNFLSV  861 (967)
Q Consensus       786 ~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~-ip~~~~~l~~L~~LdLs~N~l~g~ip---~~l~~l~~L~~  861 (967)
                      .|+.|++++|++++.+|..++.+++|++|++++|++++. .|..++.+++|+.||+++|.+++..+   ..+..++.|++
T Consensus        65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  144 (149)
T 2je0_A           65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY  144 (149)
T ss_dssp             TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred             CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence            344455555555555555566666677777777777652 34666777777777777777776655   45666777777


Q ss_pred             EEcc
Q 046844          862 LNLS  865 (967)
Q Consensus       862 l~ls  865 (967)
                      ||++
T Consensus       145 L~l~  148 (149)
T 2je0_A          145 LDGY  148 (149)
T ss_dssp             ETTB
T ss_pred             ccCC
Confidence            7665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=5.4e-14  Score=138.57  Aligned_cols=91  Identities=20%  Similarity=0.218  Sum_probs=72.6

Q ss_pred             CCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEE
Q 046844          784 PNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLN  863 (967)
Q Consensus       784 ~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~  863 (967)
                      ++.|+.|++++|++++..|..|+.+++|++|+|++|++++..|..|+.+++|+.|||++|++++..+..+..++.|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence            34455666666666666666678888889999999998887777788888999999999999877666678888899999


Q ss_pred             ccCCccccCCC
Q 046844          864 LSYNNLVGKIP  874 (967)
Q Consensus       864 ls~N~l~g~ip  874 (967)
                      +++|+++|.+|
T Consensus       131 l~~N~~~~~~~  141 (177)
T 2o6r_A          131 LHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCBCCCHH
T ss_pred             ecCCCeeccCc
Confidence            99998888776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.49  E-value=2.3e-14  Score=156.64  Aligned_cols=272  Identities=14%  Similarity=0.063  Sum_probs=129.9

Q ss_pred             CCCccEEEccCCCCCCCCcccccC-CCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccC-------
Q 046844          174 LPNLQVLSLSGCDLSGPINHYLAK-SRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILH-------  245 (967)
Q Consensus       174 l~~L~~L~Ls~~~l~~~~~~~l~~-l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-------  245 (967)
                      ++++++|.++++ +.......+.. +++|++|+|++|.+...... -+.++.++.+.+..+.+   .+.+|.+       
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~-~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~   98 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGK-AGTYPNGKFYIYMANFV---PAYAFSNVVNGVTK   98 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEES-SSSSGGGCCEEECTTEE---CTTTTEEEETTEEE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCc-ccccccccccccccccc---CHHHhccccccccc
Confidence            445677777653 11111122333 56677777777765511000 01112233343333321   2234445       


Q ss_pred             -CCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCC----CCCCCCccccCCCC
Q 046844          246 -VPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCN----FTGPIPPSMANLTQ  320 (967)
Q Consensus       246 -l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~----l~~~~~~~l~~l~~  320 (967)
                       +++|++|++.. .+..+...+|.+|++|+++++.+|.+....+.+|..+.++..+....+.    .......+|..+..
T Consensus        99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A           99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence             77777777776 5666666667777777777777777665555666666666665554421    11122333444555


Q ss_pred             Cc-EEEccCccccc-cCc-cccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEe
Q 046844          321 LF-HMDFSSNHFFG-PIP-SLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQ  397 (967)
Q Consensus       321 L~-~L~L~~n~l~~-~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  397 (967)
                      |+ .+.+....... .+. ......+++.+.+.++-.. .....+...+++|+.+++++|.++...+.+|.++++|+.++
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~  256 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK  256 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence            54 33333221100 000 0011224455555433111 11111122366777777777666654455666677777777


Q ss_pred             CcCCcCccccccccccCCCccc-EEEeeCCcCCCCCChhhhccCCCCCEEECCCCccccc
Q 046844          398 LSNNQFENQLPEISNVSSSVLF-DLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRL  456 (967)
Q Consensus       398 L~~n~l~~~~~~~~~~~~~~L~-~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l  456 (967)
                      +.+| +. .++...+..+.+|+ .+++.+ .++ .|+...|.+|++|+.++++.|+++.+
T Consensus       257 l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I  312 (329)
T 3sb4_A          257 LPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTL  312 (329)
T ss_dssp             CCTT-CC-EECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred             CCcc-cc-eehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCcc
Confidence            7665 33 23333344444444 444444 333 34444444555555555444444433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=3.2e-13  Score=131.68  Aligned_cols=117  Identities=19%  Similarity=0.158  Sum_probs=89.6

Q ss_pred             CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEc
Q 046844          619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL  698 (967)
Q Consensus       619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  698 (967)
                      +.+.+++++|.++ .+|.. +.  .+|++|+|++|+|++..|..|..+++|++|+|++|+|+++.+..|.++++|++|+|
T Consensus        10 ~~~~l~~s~n~l~-~ip~~-~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTG-IP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSC-CC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcC-ccCcc-CC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            3466777777776 56665 22  57788888888888777778888888888888888888877777888888888888


Q ss_pred             cCCccceecCCCCCCCCCCCCcEEecCCccCcCcCc-HHHHHHH
Q 046844          699 RSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLS-QKWLLTM  741 (967)
Q Consensus       699 ~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p-~~~~~~~  741 (967)
                      ++|+|++..  +..+..+++|+.|+|++|++++.++ ..++..+
T Consensus        86 ~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~  127 (170)
T 3g39_A           86 NDNQLKSIP--RGAFDNLKSLTHIWLLNNPWDCACSDILYLSRW  127 (170)
T ss_dssp             CSSCCCCCC--TTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHH
T ss_pred             CCCccCEeC--HHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHH
Confidence            888888765  5568888899999999999998886 3444333

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1.3e-13  Score=135.69  Aligned_cols=133  Identities=20%  Similarity=0.192  Sum_probs=113.1

Q ss_pred             hhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCC
Q 046844          588 VCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN  667 (967)
Q Consensus       588 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  667 (967)
                      +.++.+|+.|++++|+++ .+|.......  +|+.|++++|.+++ + .. |..+++|++|++++|++++..+..|..++
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~--~L~~L~Ls~N~l~~-~-~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIENLGATLD--QFDAIDFSDNEIRK-L-DG-FPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTT--CCSEEECCSSCCCE-E-CC-CCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             cCCcCCceEEEeeCCCCc-hhHHhhhcCC--CCCEEECCCCCCCc-c-cc-cccCCCCCEEECCCCcccccCcchhhcCC
Confidence            456789999999999998 5665333322  89999999999995 4 34 89999999999999999987667779999


Q ss_pred             CCCEEECCCCccccccch--hhhcCCCCCEEEccCCccceecCCCCC----CCCCCCCcEEecCCccCc
Q 046844          668 MLQVLDLRSNYISDNFPC--WLRNASSLQVLVLRSNNFSGHISCPRN----KVSWPLLQIVDLACNKFS  730 (967)
Q Consensus       668 ~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~~~p~~----~~~l~~L~~Ldls~N~l~  730 (967)
                      +|++|++++|+++. +|.  .+..+++|+.|++++|+++..   |..    +..+++|+.||++.|...
T Consensus        89 ~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~---~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           89 DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK---KHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS---TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCc---HhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999999999976 454  889999999999999999854   664    888999999999999865

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=1.1e-15  Score=153.82  Aligned_cols=81  Identities=21%  Similarity=0.234  Sum_probs=55.8

Q ss_pred             CcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCC-ccccCCCCCCeEeCcCccccccCCcc----------c
Q 046844          785 NIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIP-SSFGNLKEIESLDLSMNNLSGKIPAQ----------L  853 (967)
Q Consensus       785 ~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip-~~~~~l~~L~~LdLs~N~l~g~ip~~----------l  853 (967)
                      +.|+.|++++|++++ +| .++.+++|+.|+|++|++++..+ ..++.+++|+.|++++|.+++.+|..          +
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            345566666666665 44 46777778888888888775322 46777888888888888887776653          6


Q ss_pred             cCCCCCCeEEccCCcc
Q 046844          854 ASLNFLSVLNLSYNNL  869 (967)
Q Consensus       854 ~~l~~L~~l~ls~N~l  869 (967)
                      ..++.|++||  +|.+
T Consensus       171 ~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          171 KRLPNLKKLD--GMPV  184 (198)
T ss_dssp             HHCSSCSEEC--CGGG
T ss_pred             HhCCCcEEEC--Cccc
Confidence            7788888776  4444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=1.1e-12  Score=128.38  Aligned_cols=108  Identities=19%  Similarity=0.139  Sum_probs=77.6

Q ss_pred             cEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccC
Q 046844          621 EVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRS  700 (967)
Q Consensus       621 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  700 (967)
                      +.+++++|.+. .+|.. +.  .+|++|+|++|+|++..|..|.++++|++|+|++|+|+++.+..|.++++|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~~-~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAG-IP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSC-CC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCC-cC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            45666666665 56655 22  5677777777777776677777777777777777777776666677777777777777


Q ss_pred             CccceecCCCCCCCCCCCCcEEecCCccCcCcCc
Q 046844          701 NNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLS  734 (967)
Q Consensus       701 N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p  734 (967)
                      |+|++..  +..+..+++|+.|++++|++.+.++
T Consensus        91 N~l~~l~--~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIP--RGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCC--TTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeC--HHHhccccCCCEEEeCCCCcccccc
Confidence            7777654  4457778888888888888888776

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=5.1e-13  Score=131.31  Aligned_cols=64  Identities=17%  Similarity=0.217  Sum_probs=40.0

Q ss_pred             ccCCCCCcEEECCCCCCcccCCc--cccCCCCCCeEeCcCccccccCCcc----ccCCCCCCeEEccCCccc
Q 046844          805 MGRFRSLYALNMSHNALTGSIPS--SFGNLKEIESLDLSMNNLSGKIPAQ----LASLNFLSVLNLSYNNLV  870 (967)
Q Consensus       805 ~~~l~~L~~L~Ls~N~l~g~ip~--~~~~l~~L~~LdLs~N~l~g~ip~~----l~~l~~L~~l~ls~N~l~  870 (967)
                      ++.+++|+.|+|++|+++ .+|.  .++.+++|+.|++++|.++ .+|..    +..++.|++||++.|...
T Consensus        84 ~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           84 DQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             hhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            455666666666666664 3454  5666666666666666666 34443    666677777777766653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=1.8e-15  Score=152.25  Aligned_cols=151  Identities=17%  Similarity=0.168  Sum_probs=107.3

Q ss_pred             cccEEeCCCCccCCCCcc------cccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCC
Q 046844          644 GLQILDLSGNQLQGVVPK------SLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWP  717 (967)
Q Consensus       644 ~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~  717 (967)
                      .++.++++.+.+++..|.      .|..+++|++|++++|++++ +| .+.++++|++|++++|+++..   |..+..++
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l---~~~~~~~~   93 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI---ENLDAVAD   93 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC---SSHHHHHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc---cchhhcCC
Confidence            344444444444444443      77777778888888887777 45 677777888888888877732   65566667


Q ss_pred             CCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcc
Q 046844          718 LLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNF  797 (967)
Q Consensus       718 ~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l  797 (967)
                      +|+.|++++|++++ +| .+.                                            .++.|+.|++++|++
T Consensus        94 ~L~~L~L~~N~l~~-l~-~~~--------------------------------------------~l~~L~~L~l~~N~i  127 (198)
T 1ds9_A           94 TLEELWISYNQIAS-LS-GIE--------------------------------------------KLVNLRVLYMSNNKI  127 (198)
T ss_dssp             HCSEEEEEEEECCC-HH-HHH--------------------------------------------HHHHSSEEEESEEEC
T ss_pred             cCCEEECcCCcCCc-CC-ccc--------------------------------------------cCCCCCEEECCCCcC
Confidence            78888888888775 33 111                                            244577888888888


Q ss_pred             cCCCc-ccccCCCCCcEEECCCCCCcccCCcc----------ccCCCCCCeEeCcCccccc
Q 046844          798 EGPIP-VEMGRFRSLYALNMSHNALTGSIPSS----------FGNLKEIESLDLSMNNLSG  847 (967)
Q Consensus       798 ~g~ip-~~~~~l~~L~~L~Ls~N~l~g~ip~~----------~~~l~~L~~LdLs~N~l~g  847 (967)
                      ++..+ ..++.+++|++|++++|.+++.+|..          +..+++|+.||  +|.++.
T Consensus       128 ~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            75433 47889999999999999999888764          88999999998  666653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=1.6e-12  Score=126.63  Aligned_cols=108  Identities=24%  Similarity=0.234  Sum_probs=92.8

Q ss_pred             CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844          593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL  672 (967)
Q Consensus       593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  672 (967)
                      +.+.+++++|.++ .+|..+.    ++|++|+|++|++++..|.. |..+++|++|+|++|+|++..+..|..+++|++|
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~----~~l~~L~L~~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L   83 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP----TTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL   83 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC----TTCSEEECCSSCCCCCCTTT-TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEEeCCCCcC-ccCccCC----CCCcEEEcCCCcCCccChhh-hcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence            3578999999998 6787653    28999999999999555555 8999999999999999998888888999999999


Q ss_pred             ECCCCccccccchhhhcCCCCCEEEccCCcccee
Q 046844          673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGH  706 (967)
Q Consensus       673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  706 (967)
                      +|++|+|++..+..|.++++|++|+|++|++++.
T Consensus        84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999999998888899999999999999998754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.38  E-value=1.6e-11  Score=136.81  Aligned_cols=248  Identities=12%  Similarity=0.133  Sum_probs=121.1

Q ss_pred             hhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCC
Q 046844          217 EFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLEN  296 (967)
Q Consensus       217 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  296 (967)
                      .+|.++ +|+.+.+..+ ++..-..+|.+ .+|+.+.+.. .+......+|.+|++|+.+++.+|.+......+|. +.+
T Consensus       130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~  204 (401)
T 4fdw_A          130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAG  204 (401)
T ss_dssp             TTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCC
T ss_pred             hhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecc
Confidence            334443 4555555443 33333334444 2455555553 34444445555666666666666655543333444 456


Q ss_pred             CCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCC
Q 046844          297 LTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGH  376 (967)
Q Consensus       297 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  376 (967)
                      |+.+.+..+ ++.....+|.++++|+.+++..+ ++..-...+...+|+.+.+. +.+. .++...|.++++|+.+.+.+
T Consensus       205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~  280 (401)
T 4fdw_A          205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYG  280 (401)
T ss_dssp             CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEES
T ss_pred             cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCC
Confidence            666666533 44344455666666666666543 22222222222455555552 2232 33333456666666666655


Q ss_pred             CcCC-----CCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCC
Q 046844          377 NSLS-----GSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSN  451 (967)
Q Consensus       377 n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n  451 (967)
                      +.+.     ...+.+|..|++|+.+.+.+ .+.                          .++...|.+|++|+.+.+..+
T Consensus       281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~--------------------------~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR--------------------------ILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC--------------------------EECTTTTTTCCSCCEEEECTT
T ss_pred             ccccCCcccEECHHHhhCCccCCeEEeCC-ceE--------------------------EEhhhhhcCCCCccEEEECcc
Confidence            5443     12233444555555555542 122                          445555566666666666443


Q ss_pred             cccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccc
Q 046844          452 KFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLV  511 (967)
Q Consensus       452 ~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l  511 (967)
                       ++.+....        |.++ +|+.+++++|.+....+..|.... .+++.|.+..+.+
T Consensus       334 -l~~I~~~a--------F~~~-~L~~l~l~~n~~~~l~~~~F~~~~-~~l~~l~vp~~~~  382 (401)
T 4fdw_A          334 -VTQINFSA--------FNNT-GIKEVKVEGTTPPQVFEKVWYGFP-DDITVIRVPAESV  382 (401)
T ss_dssp             -CCEECTTS--------SSSS-CCCEEEECCSSCCBCCCSSCCCSC-TTCCEEEECGGGH
T ss_pred             -ccEEcHHh--------CCCC-CCCEEEEcCCCCcccccccccCCC-CCccEEEeCHHHH
Confidence             43332211        5556 666666666655543333333221 2445555555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=3.9e-12  Score=124.37  Aligned_cols=107  Identities=21%  Similarity=0.236  Sum_probs=92.4

Q ss_pred             CcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEE
Q 046844          594 FQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLD  673 (967)
Q Consensus       594 L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  673 (967)
                      -+.+++++|+++ .+|..+.    ++|++|+|++|++++..|.. |..+++|++|+|++|+|++..+..|..+++|++|+
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~----~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~   87 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP----TDKQRLWLNNNQITKLEPGV-FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD   87 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC----TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcEEEeCCCCCC-ccCCCcC----CCCcEEEeCCCCccccCHHH-hcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence            368999999996 7887663    28999999999999655655 99999999999999999988777789999999999


Q ss_pred             CCCCccccccchhhhcCCCCCEEEccCCcccee
Q 046844          674 LRSNYISDNFPCWLRNASSLQVLVLRSNNFSGH  706 (967)
Q Consensus       674 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  706 (967)
                      |++|+|++..+..|..+++|+.|+|++|++...
T Consensus        88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            999999988777799999999999999998754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.34  E-value=1.5e-11  Score=137.10  Aligned_cols=80  Identities=13%  Similarity=0.105  Sum_probs=38.9

Q ss_pred             CcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCC-CCCeEE
Q 046844          785 NIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLN-FLSVLN  863 (967)
Q Consensus       785 ~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~l~  863 (967)
                      ..|+.+++. ++++-.-...|.+++.|+.++|..| ++-.-+..|.++ +|+.+++++|.+.-..+..|.+++ .+..+.
T Consensus       300 ~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~  376 (401)
T 4fdw_A          300 PKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIR  376 (401)
T ss_dssp             TTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEE
T ss_pred             ccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEE
Confidence            334444444 2233333344555555666665433 443344455555 566666666655544444455442 444554


Q ss_pred             ccCC
Q 046844          864 LSYN  867 (967)
Q Consensus       864 ls~N  867 (967)
                      +..|
T Consensus       377 vp~~  380 (401)
T 4fdw_A          377 VPAE  380 (401)
T ss_dssp             ECGG
T ss_pred             eCHH
Confidence            4433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.28  E-value=9.1e-11  Score=131.52  Aligned_cols=78  Identities=14%  Similarity=0.204  Sum_probs=38.9

Q ss_pred             CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEc
Q 046844          619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL  698 (967)
Q Consensus       619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  698 (967)
                      +|+.+.+.++ ++ .|+..+|.++.+|+.+++.++ ++.+-..+|.+|++|+.+++..| ++.+...+|.+|++|+.+++
T Consensus       298 ~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          298 SLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             TCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred             cccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence            4444444332 32 444444555555555555432 44344445555555555555544 44444455555555555555


Q ss_pred             cC
Q 046844          699 RS  700 (967)
Q Consensus       699 ~~  700 (967)
                      ..
T Consensus       374 p~  375 (394)
T 4fs7_A          374 PK  375 (394)
T ss_dssp             EG
T ss_pred             CC
Confidence            43

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.28  E-value=1e-10  Score=131.17  Aligned_cols=311  Identities=13%  Similarity=0.072  Sum_probs=170.4

Q ss_pred             HhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCC
Q 046844          170 ALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTL  249 (967)
Q Consensus       170 ~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  249 (967)
                      ++..+.+|+++.+.. .++.....+|.++++|+.+++..+ +......+|.+++.|+.+.+..+ +......+|.++..+
T Consensus        66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~  142 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK  142 (394)
T ss_dssp             TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred             HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence            445555555555543 244333455666666666666543 33333445666666666555433 222333344444332


Q ss_pred             CEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCc
Q 046844          250 ETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSN  329 (967)
Q Consensus       250 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  329 (967)
                      +......  .......+|..+.+|+.+.+..+. ......+|.++.+|+.+++..+ ++.....++.++..|+.+.+..+
T Consensus       143 ~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~  218 (394)
T 4fs7_A          143 EITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS  218 (394)
T ss_dssp             EEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred             ccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence            2222221  223344456667777777775443 2234456667777777777655 33333455666777777666554


Q ss_pred             cccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCcccccc
Q 046844          330 HFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPE  409 (967)
Q Consensus       330 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  409 (967)
                      ... .-...+....|+.+.+.... . .+....+..+..++.+.+..+... .....+..+..++.+......+    +.
T Consensus       219 ~~~-i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i----~~  290 (394)
T 4fs7_A          219 LYY-LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV----PE  290 (394)
T ss_dssp             CCE-ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE----CT
T ss_pred             ceE-eehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee----cc
Confidence            322 11122333467777665432 1 233334667777777777665433 3445666777777776665432    33


Q ss_pred             ccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCC
Q 046844          410 ISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEV  489 (967)
Q Consensus       410 ~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~  489 (967)
                      ..+..+.+|+.+.+..+ +. .|+...|.++.+|+.+++..+ ++.+....        |.+|++|+.+++..+ ++...
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a--------F~~c~~L~~i~lp~~-l~~I~  358 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRS--------FRGCTSLSNINFPLS-LRKIG  358 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTT--------TTTCTTCCEECCCTT-CCEEC
T ss_pred             ccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHh--------ccCCCCCCEEEECcc-ccEeh
Confidence            34456677777777654 33 566677778888888887643 44443221        777788888877665 44333


Q ss_pred             CcchhccCCCCcceeecccc
Q 046844          490 PNWIWEVGSGNLKFLNLSHN  509 (967)
Q Consensus       490 ~~~~~~~~~~~L~~L~Ls~n  509 (967)
                      ...|..  +.+|+.+++..+
T Consensus       359 ~~aF~~--C~~L~~i~lp~~  376 (394)
T 4fs7_A          359 ANAFQG--CINLKKVELPKR  376 (394)
T ss_dssp             TTTBTT--CTTCCEEEEEGG
T ss_pred             HHHhhC--CCCCCEEEECCC
Confidence            334433  345777777544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.21  E-value=4.2e-11  Score=131.91  Aligned_cols=116  Identities=21%  Similarity=0.198  Sum_probs=87.8

Q ss_pred             EEECCCC-cCcccCCCCCCCCCCcccEEeCCC-CccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEcc
Q 046844          622 VLNLGRN-NLNGTLSDTIFPGDCGLQILDLSG-NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLR  699 (967)
Q Consensus       622 ~L~Ls~N-~l~~~ip~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  699 (967)
                      .++++++ +++ .||.  ++.+.+|++|+|++ |+|++..+..|.++++|+.|+|++|+|+++.|..|.++++|+.|+|+
T Consensus        12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            4566666 666 5776  66777788888875 88887777788888888888888888888888888888888888888


Q ss_pred             CCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhh
Q 046844          700 SNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMV  743 (967)
Q Consensus       700 ~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~  743 (967)
                      +|+|++..  +..+..++ |+.|+|++|++.+.+...++..+..
T Consensus        89 ~N~l~~~~--~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~  129 (347)
T 2ifg_A           89 FNALESLS--WKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEE  129 (347)
T ss_dssp             SSCCSCCC--STTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHH
T ss_pred             CCccceeC--HHHcccCC-ceEEEeeCCCccCCCccHHHHHHHH
Confidence            88888664  44444444 8899999999988888777755543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.20  E-value=9.6e-13  Score=145.35  Aligned_cols=50  Identities=26%  Similarity=0.311  Sum_probs=24.6

Q ss_pred             cccCCCCCcEEECCCCCCccc----CCccccCCCCCCeEeCcCccccccCCccc
Q 046844          804 EMGRFRSLYALNMSHNALTGS----IPSSFGNLKEIESLDLSMNNLSGKIPAQL  853 (967)
Q Consensus       804 ~~~~l~~L~~L~Ls~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~g~ip~~l  853 (967)
                      .+...+.|+.|||++|.+++.    ++..+...++|++|||++|.|++.-...+
T Consensus       206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            344445555555555555532    22333344555555555555554433333

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.19  E-value=2.1e-12  Score=142.64  Aligned_cols=88  Identities=16%  Similarity=0.283  Sum_probs=70.1

Q ss_pred             CcceEEECCCCcccC----CCcccccCCCCCcEEECCCCCCccc----CCccccCCCCCCeEeCcCcccccc----CCcc
Q 046844          785 NIFTSIDFSSNNFEG----PIPVEMGRFRSLYALNMSHNALTGS----IPSSFGNLKEIESLDLSMNNLSGK----IPAQ  852 (967)
Q Consensus       785 ~~l~~l~Ls~N~l~g----~ip~~~~~l~~L~~L~Ls~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~g~----ip~~  852 (967)
                      ..|+.|+|++|.++.    .++..+..++.|++|||++|.+++.    ++..+...++|+.|||++|.|++.    ++..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            457778888888764    3445567788999999999999863    466778889999999999999864    4455


Q ss_pred             ccCCCCCCeEEccCCccccC
Q 046844          853 LASLNFLSVLNLSYNNLVGK  872 (967)
Q Consensus       853 l~~l~~L~~l~ls~N~l~g~  872 (967)
                      +...+.|++||+++|.+++.
T Consensus       235 L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          235 AREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHCSSCCEEECTTSSCCHH
T ss_pred             HHhCCCCCEEeccCCCCCHH
Confidence            66779999999999998653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.07  E-value=2.9e-10  Score=125.15  Aligned_cols=89  Identities=20%  Similarity=0.190  Sum_probs=67.4

Q ss_pred             cCCcceEEECCC-CcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCe
Q 046844          783 VPNIFTSIDFSS-NNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSV  861 (967)
Q Consensus       783 ~~~~l~~l~Ls~-N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  861 (967)
                      .+..|+.|+|++ |+|++..|..|+.+++|+.|+|++|+|+|.+|..|++|++|+.|||++|+|++..|..+..++ |+.
T Consensus        29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~  107 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQE  107 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCE
T ss_pred             CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceE
Confidence            345577788875 788777777788888888888888888887777788888888888888888876666666665 888


Q ss_pred             EEccCCccccC
Q 046844          862 LNLSYNNLVGK  872 (967)
Q Consensus       862 l~ls~N~l~g~  872 (967)
                      |++++|.+...
T Consensus       108 l~l~~N~~~c~  118 (347)
T 2ifg_A          108 LVLSGNPLHCS  118 (347)
T ss_dssp             EECCSSCCCCC
T ss_pred             EEeeCCCccCC
Confidence            88888877653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.05  E-value=1.1e-08  Score=114.49  Aligned_cols=263  Identities=11%  Similarity=0.150  Sum_probs=150.7

Q ss_pred             CCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeeccccc
Q 046844          431 PVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNL  510 (967)
Q Consensus       431 ~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~  510 (967)
                      .++...|..+.+|+.+.+..+ +..+...        .+..+.+|+.+.+..+ ++......|..   ..|+.+.+..+-
T Consensus       127 ~I~~~aF~~c~~L~~i~lp~~-~~~I~~~--------~F~~c~~L~~i~~~~~-~~~I~~~aF~~---~~l~~i~ip~~~  193 (394)
T 4gt6_A          127 EIDSEAFHHCEELDTVTIPEG-VTSVADG--------MFSYCYSLHTVTLPDS-VTAIEERAFTG---TALTQIHIPAKV  193 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTT-CCEECTT--------TTTTCTTCCEEECCTT-CCEECTTTTTT---CCCSEEEECTTC
T ss_pred             eehhhhhhhhcccccccccce-eeeeccc--------ceecccccccccccce-eeEeccccccc---cceeEEEECCcc
Confidence            456677788999999998654 3322211        1778888999988765 33222233321   357777765542


Q ss_pred             ccC-cCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhh
Q 046844          511 VVS-LQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVC  589 (967)
Q Consensus       511 l~~-l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~  589 (967)
                      ..- ......+..++......+.....-..        -...+.....  ....+........+.+ .+.+...-..+|.
T Consensus       194 ~~i~~~af~~c~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~~~~~~~~~~~~~i-p~~v~~i~~~aF~  262 (394)
T 4gt6_A          194 TRIGTNAFSECFALSTITSDSESYPAIDNV--------LYEKSANGDY--ALIRYPSQREDPAFKI-PNGVARIETHAFD  262 (394)
T ss_dssp             CEECTTTTTTCTTCCEEEECCSSSCBSSSC--------EEEECTTSCE--EEEECCTTCCCSEEEC-CTTEEEECTTTTT
T ss_pred             cccccchhhhccccceecccccccccccce--------eecccccccc--cccccccccccceEEc-CCcceEcccceee
Confidence            211 12222355555555444332211000        0000000000  0000000000000111 1223333445678


Q ss_pred             cCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCC
Q 046844          590 KATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML  669 (967)
Q Consensus       590 ~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  669 (967)
                      .+..|+.+.+.++..+ .-...+..+.  .|+.+.+. +.++ .|+..+|.++.+|+.+++..+ ++.+-..+|.+|++|
T Consensus       263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~--~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVS-IGTGAFMNCP--ALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TCSSCCEEECCTTCCE-ECTTTTTTCT--TCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             ecccccEEecccccce-ecCccccccc--ccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            8899999999766543 3344555655  89999996 4566 788888999999999999865 666667889999999


Q ss_pred             CEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccC
Q 046844          670 QVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKF  729 (967)
Q Consensus       670 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l  729 (967)
                      +.+.+..+ ++.+...+|.+|++|+.+++.++....     ..+.....|+.+++..|.+
T Consensus       337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-----~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-----NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-----HTCBCCCCC----------
T ss_pred             CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-----hhhhccCCCCEEEeCCCCE
Confidence            99999755 777778899999999999999987542     2355667788888776654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.01  E-value=1.9e-08  Score=112.52  Aligned_cols=107  Identities=13%  Similarity=0.246  Sum_probs=62.6

Q ss_pred             hhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCC
Q 046844          588 VCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN  667 (967)
Q Consensus       588 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  667 (967)
                      +.++++|+.+.+. +.++..-..+|..+.  +|+.++|..+ ++ .|...+|.++.+|+.+.+..+ ++.+-..+|.+|+
T Consensus       284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~--~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~  357 (394)
T 4gt6_A          284 FMNCPALQDIEFS-SRITELPESVFAGCI--SLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT  357 (394)
T ss_dssp             TTTCTTCCEEECC-TTCCEECTTTTTTCT--TCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred             cccccccccccCC-CcccccCceeecCCC--CcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence            3344555555553 233312223344444  6666666543 44 677777888888998888654 6666677899999


Q ss_pred             CCCEEECCCCccccccchhhhcCCCCCEEEccCCcc
Q 046844          668 MLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNF  703 (967)
Q Consensus       668 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l  703 (967)
                      +|+.+++.++....   ..+..+.+|+.+.+..|.+
T Consensus       358 ~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          358 ALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            99999998876532   4566788888888776654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.67  E-value=5.6e-09  Score=114.02  Aligned_cols=38  Identities=29%  Similarity=0.435  Sum_probs=18.8

Q ss_pred             CCCCcEEEccCcccccc----Ccc-ccccCcccEEECCCCCCC
Q 046844          318 LTQLFHMDFSSNHFFGP----IPS-LHKSRNLNNLDLSFNNLS  355 (967)
Q Consensus       318 l~~L~~L~L~~n~l~~~----~~~-~~~~~~L~~L~L~~n~l~  355 (967)
                      +++|++|+|+.|.+.+.    ++. ...+++|+.|++++|.++
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            45555555555555431    111 122346666666666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.64  E-value=1.8e-08  Score=110.07  Aligned_cols=187  Identities=13%  Similarity=0.098  Sum_probs=84.9

Q ss_pred             CcEEEEECCCCCccc-cc-----CCCCCCcCCCCCCeeeCCCCCCCCC--------CCCccccCCCCCCEEeCCCCCCCc
Q 046844           41 GHVIGLDLSWEPIIG-GL-----ENATGLFDLQYLQSLNLGFTLFKGF--------QIPSRLGNLTNLTYLNLSQGGFAG  106 (967)
Q Consensus        41 ~~v~~L~L~~~~l~g-~~-----~~~~~l~~l~~L~~L~Ls~n~~~~~--------~lp~~l~~l~~L~~L~Ls~~~~~~  106 (967)
                      .+|+.|.+......| ..     ....++.++++|+.|.+........        .++..+..+++|+.|+|++|.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            467777776544332 10     0023455677888887765432110        13344556677777777665211 


Q ss_pred             cCChhccCCCCCCEEeCCCCCCCccccccccccHHHH-hcCCCCCCEEEcCCc--cC-CCcch-hHHHHh--cCCCCccE
Q 046844          107 EIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLF-LQNLTELTELHLDRV--DL-SASGT-EWCKAL--SFLPNLQV  179 (967)
Q Consensus       107 ~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~-l~~l~~L~~L~l~~~--~l-~~~~~-~~~~~l--~~l~~L~~  179 (967)
                      .++. +. +++|++|++..|. +.      ...+... ...+++|++|+|...  .. ..... .....+  ..+|+|++
T Consensus       186 ~l~~-~~-~~~L~~L~L~~~~-l~------~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~  256 (362)
T 2ra8_A          186 SIGK-KP-RPNLKSLEIISGG-LP------DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW  256 (362)
T ss_dssp             BCCS-CB-CTTCSEEEEECSB-CC------HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCE
T ss_pred             eecc-cc-CCCCcEEEEecCC-CC------hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCE
Confidence            3333 32 6667777766532 11      0011111 125666666665321  10 01000 011111  23556666


Q ss_pred             EEccCCCCCCCCccccc---CCCCCCEEEccCCCCCCcchhh----hcCCCCCCEEeccCCCCCC
Q 046844          180 LSLSGCDLSGPINHYLA---KSRSLSVIRLHYNYGLSSGTEF----LAHLTNLKALDLSECGLQG  237 (967)
Q Consensus       180 L~Ls~~~l~~~~~~~l~---~l~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~  237 (967)
                      |++.+|.+....+..+.   .+++|++|+|+.|.+.+..+..    +..+++|+.|++++|.++.
T Consensus       257 L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          257 LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             EEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             EeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            66655555432222221   3455555555555544432222    2234555555555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.59  E-value=2.5e-06  Score=94.78  Aligned_cols=83  Identities=14%  Similarity=0.197  Sum_probs=35.4

Q ss_pred             hhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCC
Q 046844          363 WEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRN  442 (967)
Q Consensus       363 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~  442 (967)
                      +..+..|+.+.+..+ ++.....++.++.+|+.+.+..+ +. .++...+..+.+|+.+.+.++.++ .|+...|.+|.+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~  311 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVK  311 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTT
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccc-eehhhhhcCCCC
Confidence            444555555555443 22222334444555555554332 11 122223333444444444444433 344444444555


Q ss_pred             CCEEECC
Q 046844          443 LYTLDLS  449 (967)
Q Consensus       443 L~~L~Ls  449 (967)
                      |+.+.+.
T Consensus       312 L~~i~lp  318 (379)
T 4h09_A          312 LSSVTLP  318 (379)
T ss_dssp             CCEEECC
T ss_pred             CCEEEcC
Confidence            5554443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.52  E-value=6.3e-06  Score=91.47  Aligned_cols=201  Identities=13%  Similarity=0.072  Sum_probs=108.7

Q ss_pred             CCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCC------------CCccccccCCCCCCEEEccCCCCCCCCCccc
Q 046844          248 TLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS------------GTLPDSIGNLENLTRVEVSSCNFTGPIPPSM  315 (967)
Q Consensus       248 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  315 (967)
                      +++.+.+..+ +.......|..+..++...+..+...            ......+.....+..+.+...... .....+
T Consensus       136 ~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f  213 (379)
T 4h09_A          136 SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-VTAYGF  213 (379)
T ss_dssp             CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-ECTTTT
T ss_pred             eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE-Eeeccc
Confidence            4444444332 23334444555555555555433221            112223344445555554433221 223345


Q ss_pred             cCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCE
Q 046844          316 ANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEM  395 (967)
Q Consensus       316 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  395 (967)
                      ..+.+|+.+.+..+--.-....+..+..|+.+.+..+ ++ .+....+.++.+|+.+.+..+ +.......|..+++|+.
T Consensus       214 ~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          214 SYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred             ccccccceeeeccceeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceecccccccccccccc
Confidence            5566666666654321111112333446777776554 32 344444677777777777543 33333456677778888


Q ss_pred             EeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccc
Q 046844          396 LQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLK  457 (967)
Q Consensus       396 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~  457 (967)
                      +.+.++.++ .++...+..+.+|+.+.+..+ ++ .|....|.+|++|+.+.+..+ ++.+.
T Consensus       291 i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~-v~~I~  348 (379)
T 4h09_A          291 VVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS-ITLIE  348 (379)
T ss_dssp             EEECCTTCC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred             ccccccccc-eehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc-cCEEc
Confidence            877776665 344445566777888877644 43 677778889999998888654 44443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.32  E-value=3.6e-07  Score=94.31  Aligned_cols=78  Identities=22%  Similarity=0.235  Sum_probs=52.2

Q ss_pred             CCcceEEECCCCcccC--CCcccccCCCCCcEEECCCCCCcccCCccccCCC--CCCeEeCcCccccccCCc-------c
Q 046844          784 PNIFTSIDFSSNNFEG--PIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLK--EIESLDLSMNNLSGKIPA-------Q  852 (967)
Q Consensus       784 ~~~l~~l~Ls~N~l~g--~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~--~L~~LdLs~N~l~g~ip~-------~  852 (967)
                      ++.|+.|+||+|++++  .+|..++.+++|+.||||+|+|++.  ..+..++  +|+.|+|++|.+++.+|.       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            5567777777777777  4556666777777777777777764  3344444  777777777777776652       3


Q ss_pred             ccCCCCCCeEE
Q 046844          853 LASLNFLSVLN  863 (967)
Q Consensus       853 l~~l~~L~~l~  863 (967)
                      +..++.|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            55666676665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.31  E-value=5.3e-07  Score=88.59  Aligned_cols=115  Identities=20%  Similarity=0.276  Sum_probs=46.9

Q ss_pred             hcCCCCCCEEEcCCc-cCCCcch-hHHHHhcCCCCccEEEccCCCCCCC----CcccccCCCCCCEEEccCCCCCCcc--
Q 046844          144 LQNLTELTELHLDRV-DLSASGT-EWCKALSFLPNLQVLSLSGCDLSGP----INHYLAKSRSLSVIRLHYNYGLSSG--  215 (967)
Q Consensus       144 l~~l~~L~~L~l~~~-~l~~~~~-~~~~~l~~l~~L~~L~Ls~~~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~--  215 (967)
                      +...+.|++|++++| .+.+.+. .+...+...++|++|+|++|.+...    +...+...++|++|+|++|.+....  
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344444444444444 4433221 1223334444444444444444331    1122333344444444444444322  


Q ss_pred             --hhhhcCCCCCCEEec--cCCCCCCc----cchhccCCCCCCEEeccCCC
Q 046844          216 --TEFLAHLTNLKALDL--SECGLQGK----FPEKILHVPTLETLDLSINQ  258 (967)
Q Consensus       216 --~~~l~~l~~L~~L~L--s~n~l~~~----~~~~l~~l~~L~~L~L~~n~  258 (967)
                        ...+...+.|++|+|  ++|.+...    +...+...++|++|++++|.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence              223334444555555  44554422    22223333445555544443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.29  E-value=5.3e-07  Score=88.63  Aligned_cols=93  Identities=15%  Similarity=0.099  Sum_probs=45.7

Q ss_pred             hcCCCCCCEEEcCCccCCCcch-hHHHHhcCCCCccEEEccCCCCCCC----CcccccCCCCCCEEEc--cCCCCCCcc-
Q 046844          144 LQNLTELTELHLDRVDLSASGT-EWCKALSFLPNLQVLSLSGCDLSGP----INHYLAKSRSLSVIRL--HYNYGLSSG-  215 (967)
Q Consensus       144 l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~l~~L~~L~Ls~~~l~~~----~~~~l~~l~~L~~L~L--~~n~~~~~~-  215 (967)
                      +...++|++|++++|.+.+.+. .+...+...+.|++|+|++|.+...    +...+...++|++|+|  ++|.+.... 
T Consensus        61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~  140 (185)
T 1io0_A           61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  140 (185)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence            3334444444444444433221 1223334445555555555555432    2334445555666666  555555432 


Q ss_pred             ---hhhhcCCCCCCEEeccCCCCC
Q 046844          216 ---TEFLAHLTNLKALDLSECGLQ  236 (967)
Q Consensus       216 ---~~~l~~l~~L~~L~Ls~n~l~  236 (967)
                         ...+...+.|++|++++|.+.
T Consensus       141 ~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          141 MEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCcCEEeccCCCCC
Confidence               233445567777777777654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.28  E-value=1.9e-07  Score=96.44  Aligned_cols=84  Identities=25%  Similarity=0.308  Sum_probs=68.0

Q ss_pred             EECCCCc---ccCCCcccccCCCCCcEEECCCCCCcc--cCCccccCCCCCCeEeCcCccccccCCccccCCC--CCCeE
Q 046844          790 IDFSSNN---FEGPIPVEMGRFRSLYALNMSHNALTG--SIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLN--FLSVL  862 (967)
Q Consensus       790 l~Ls~N~---l~g~ip~~~~~l~~L~~L~Ls~N~l~g--~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~--~L~~l  862 (967)
                      ++++.|+   +.+.++....+++.|+.|+||+|+|++  .+|..++.+++|+.|||++|+|++.  ..+..+.  .|+.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            5677774   333333334678899999999999998  6778889999999999999999986  3445555  89999


Q ss_pred             EccCCccccCCCC
Q 046844          863 NLSYNNLVGKIPT  875 (967)
Q Consensus       863 ~ls~N~l~g~ip~  875 (967)
                      ++++|.+++.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999999998884

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.91  E-value=6.4e-06  Score=78.51  Aligned_cols=85  Identities=18%  Similarity=0.158  Sum_probs=50.4

Q ss_pred             CCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCC----CCCCEEEcCCcc-CCCcchh
Q 046844           92 TNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNL----TELTELHLDRVD-LSASGTE  166 (967)
Q Consensus        92 ~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l----~~L~~L~l~~~~-l~~~~~~  166 (967)
                      .+|++||+++|.+++.--..+.+|++|++|+|++|..+++...       ..+..+    ++|++|++++|. +++.+  
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-------~~L~~~~~~~~~L~~L~Ls~C~~ITD~G--  131 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-------ERLSQLENLQKSMLEMEIISCGNVTDKG--  131 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-------HHHHTCHHHHHHCCEEEEESCTTCCHHH--
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-------HHHHhcccccCCCCEEEcCCCCcCCHHH--
Confidence            5688888888877766556677788888888888766552211       112222    346666666553 44332  


Q ss_pred             HHHHhcCCCCccEEEccCCC
Q 046844          167 WCKALSFLPNLQVLSLSGCD  186 (967)
Q Consensus       167 ~~~~l~~l~~L~~L~Ls~~~  186 (967)
                       ...+..+++|++|++++|.
T Consensus       132 -l~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          132 -IIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             -HHHGGGCTTCCEEEEESCT
T ss_pred             -HHHHhcCCCCCEEECCCCC
Confidence             3344556666666666653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.78  E-value=1.3e-05  Score=76.40  Aligned_cols=83  Identities=18%  Similarity=0.130  Sum_probs=40.7

Q ss_pred             CccEEEccCCCCCCCCcccccCCCCCCEEEccCCC-CCCcchhhhcCC----CCCCEEeccCCC-CCCccchhccCCCCC
Q 046844          176 NLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNY-GLSSGTEFLAHL----TNLKALDLSECG-LQGKFPEKILHVPTL  249 (967)
Q Consensus       176 ~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~l~~l~~L  249 (967)
                      .|++||+++|.++..-...+..+++|++|+|++|. +++.....++.+    ++|++|+|++|. ++..--..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            35555555555444433444555555555555553 444333444443    245555555553 443333344455555


Q ss_pred             CEEeccCCC
Q 046844          250 ETLDLSINQ  258 (967)
Q Consensus       250 ~~L~L~~n~  258 (967)
                      ++|++++|.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            555555553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.09  E-value=0.0007  Score=65.75  Aligned_cols=118  Identities=14%  Similarity=0.158  Sum_probs=65.3

Q ss_pred             HHHhcCCCCCCEEEcCCc-cCCCcc-hhHHHHhcCCCCccEEEccCCCCCCC----CcccccCCCCCCEEEccCCCCCCc
Q 046844          141 SLFLQNLTELTELHLDRV-DLSASG-TEWCKALSFLPNLQVLSLSGCDLSGP----INHYLAKSRSLSVIRLHYNYGLSS  214 (967)
Q Consensus       141 ~~~l~~l~~L~~L~l~~~-~l~~~~-~~~~~~l~~l~~L~~L~Ls~~~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~  214 (967)
                      ...+.+-+.|++|+++++ .+.+.+ ..++.++..-+.|++|+|++|.+...    +.+.+..-+.|++|+|++|.+...
T Consensus        34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            334455566666666664 554433 23455566666777777777776542    234444556677777777766654


Q ss_pred             chh----hhcCCCCCCEEeccCCC---CCC----ccchhccCCCCCCEEeccCCC
Q 046844          215 GTE----FLAHLTNLKALDLSECG---LQG----KFPEKILHVPTLETLDLSINQ  258 (967)
Q Consensus       215 ~~~----~l~~l~~L~~L~Ls~n~---l~~----~~~~~l~~l~~L~~L~L~~n~  258 (967)
                      ...    .+..-+.|++|+|++|.   +..    .+...+..-+.|++|+++.|.
T Consensus       114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            333    33344557777776542   221    133344455666666665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.80  E-value=0.0017  Score=63.09  Aligned_cols=93  Identities=10%  Similarity=0.068  Sum_probs=47.8

Q ss_pred             ccCCCCCCEEeCCCC-CCCcc----CChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCC
Q 046844           88 LGNLTNLTYLNLSQG-GFAGE----IPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSA  162 (967)
Q Consensus        88 l~~l~~L~~L~Ls~~-~~~~~----lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~  162 (967)
                      +.+-+.|++|+|+++ .+.+.    +-..+..-+.|++|+|++|..-.    .....+...+..-+.|++|+|++|.|..
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd----~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD----SEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH----HHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh----HHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            344566777777764 55432    23334445566666666643222    2333444445555566666666666554


Q ss_pred             cchh-HHHHhcCCCCccEEEccC
Q 046844          163 SGTE-WCKALSFLPNLQVLSLSG  184 (967)
Q Consensus       163 ~~~~-~~~~l~~l~~L~~L~Ls~  184 (967)
                      .+.. +..++..-+.|++|+|++
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCC
Confidence            4322 233444444555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.48  E-value=0.0043  Score=56.21  Aligned_cols=55  Identities=18%  Similarity=0.279  Sum_probs=28.7

Q ss_pred             EEECCCCccc-CCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccc
Q 046844          789 SIDFSSNNFE-GPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNL  845 (967)
Q Consensus       789 ~l~Ls~N~l~-g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l  845 (967)
                      .+|-++++++ ..+|..+.  .+|+.|||++|+|+..-+..|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4556666664 34443322  2455556666655544444455555555555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.29  E-value=0.0075  Score=54.57  Aligned_cols=56  Identities=29%  Similarity=0.435  Sum_probs=27.4

Q ss_pred             EEECCCCcCc-ccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccc
Q 046844          622 VLNLGRNNLN-GTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYIS  680 (967)
Q Consensus       622 ~L~Ls~N~l~-~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  680 (967)
                      .++.+++.++ ..+|.. +.  .+|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~-lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA-FP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSC-CC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCC-CC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4444555443 234433 21  23555555555555444445555555555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	967
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-12
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.1 bits (217), Expect = 4e-19
 Identities = 76/364 (20%), Positives = 140/364 (38%), Gaps = 24/364 (6%)

Query: 65  DLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLS 124
           DL  + +L       K       +  L NLT +N S        P  + +LT+LV + ++
Sbjct: 42  DLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN 96

Query: 125 GIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWC--KALSFLPNLQVLSL 182
                + +    + NL+       ++T++   +   + +  E              + SL
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 183 SGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEK 242
                   +      +   ++ RL  +    S    LA LTNL++L  +   +    P  
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 216

Query: 243 ILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEV 302
           I  +  L+ L L+ NQL    +      ++L DL L++  +S   P  +  L  LT +++
Sbjct: 217 I--LTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 270

Query: 303 SSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTF 362
            +   +   P +         ++ +      PI +L    NL  L L FNN+S       
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLK---NLTYLTLYFNNISDISP--- 324

Query: 363 WEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLD 422
              L  LQ +   +N +S     SL  L N+  L   +NQ  + L  ++N++   +  L 
Sbjct: 325 VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD-LTPLANLTR--ITQLG 379

Query: 423 LSGN 426
           L+  
Sbjct: 380 LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.9 bits (206), Expect = 1e-17
 Identities = 72/438 (16%), Positives = 120/438 (27%), Gaps = 64/438 (14%)

Query: 431 PVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVP 490
             PI+  F    L        +  +  L  +         +  Q++ L      I     
Sbjct: 9   DTPINQIFTDTAL-------AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--- 58

Query: 491 NWIWEVGS-GNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDY 549
             I  V    NL  +N S+N    L +   +  +  L                       
Sbjct: 59  --IDGVEYLNNLTQINFSNN---QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLT 113

Query: 550 SNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIP 609
               F +   DI    + T       ++N+++ +   S   +                  
Sbjct: 114 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS----------FGN 163

Query: 610 ACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML 669
                K  + L  L     + N     ++      L+ L  + NQ+  + P        L
Sbjct: 164 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNL 221

Query: 670 QVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKF 729
             L L  N + D     L + ++L  L L +N  S              L  + L  N+ 
Sbjct: 222 DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS----GLTKLTELKLGANQI 275

Query: 730 SGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTS 789
           S       L  +   E       +   I                              T 
Sbjct: 276 SNISPLAGLTALTNLELNENQLEDISPISNL------------------------KNLTY 311

Query: 790 IDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKI 849
           +    NN     PV       L  L  ++N ++    SS  NL  I  L    N +S   
Sbjct: 312 LTLYFNNISDISPV--SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT 367

Query: 850 PAQLASLNFLSVLNLSYN 867
           P  LA+L  ++ L L+  
Sbjct: 368 P--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.0 bits (201), Expect = 5e-17
 Identities = 76/410 (18%), Positives = 133/410 (32%), Gaps = 47/410 (11%)

Query: 293 NLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFN 352
            L    +  +   N T  +  S  +L Q+  +          I  +    NL  ++ S N
Sbjct: 20  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNN 76

Query: 353 NLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISN 412
            L+         +L+++ +       ++     +      L   Q+++      L  ++ 
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 413 VSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQ 472
           +  S     D+S       +    F           +     RL ++S+K   I +L   
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 473 SQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQ 532
           + L  L  ++NQIS   P  I      NL  L+L+ N +  +    S++ +  LDL +NQ
Sbjct: 197 TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 252

Query: 533 LRGNIPYMS-PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKA 591
           +    P       + +    N  ++I    G               +         +   
Sbjct: 253 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED------ISPISNL 306

Query: 592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLS 651
            N   L L  NN+S   P   +TK                             LQ L  +
Sbjct: 307 KNLTYLTLYFNNISDISPVSSLTK-----------------------------LQRLFFA 337

Query: 652 GNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSN 701
            N++      SLAN   +  L    N ISD  P  L N + +  L L   
Sbjct: 338 NNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.9 bits (193), Expect = 5e-16
 Identities = 65/377 (17%), Positives = 113/377 (29%), Gaps = 44/377 (11%)

Query: 144 LQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPIN-------HYLA 196
             +L ++T L  DR+ + +        + +L NL  ++ S   L+             + 
Sbjct: 40  QTDLDQVTTLQADRLGIKS-----IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL 94

Query: 197 KSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSI 256
            + +            +     L +        L       +       +  +  L    
Sbjct: 95  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154

Query: 257 NQLLQGSLPNFPKNSSLRDL----ILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIP 312
           +               L +L     L  +    +    +  L NL  +  ++   +   P
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 214

Query: 313 PSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIV 372
             +  LT L  +  + N     I +L    NL +LDL+ N +S          L  L  +
Sbjct: 215 --LGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTEL 268

Query: 373 VLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPV 432
            LG N +S   P     L  L  L                 +   L  L L  N +    
Sbjct: 269 KLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 433 PISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNW 492
           P+S    L  L  L  ++NK S           +  L N + ++ L    NQIS   P  
Sbjct: 324 PVS---SLTKLQRLFFANNKVS----------DVSSLANLTNINWLSAGHNQISDLTPLA 370

Query: 493 IWEVGSGNLKFLNLSHN 509
                   +  L L+  
Sbjct: 371 ----NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.5 bits (192), Expect = 6e-16
 Identities = 74/408 (18%), Positives = 138/408 (33%), Gaps = 46/408 (11%)

Query: 222 LTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHT 281
           L       L +  +     +  L    + TL      +   S+      ++L  +  S+ 
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLD--QVTTLQADRLGI--KSIDGVEYLNNLTQINFSNN 76

Query: 282 GLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKS 341
            L+   P  + NL  L  + +++       P +         +  +      P+ +L   
Sbjct: 77  QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 342 RNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNN 401
             L     + +++S     T  +QL     V                 L NL  L+  + 
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP------------LANLTTLERLDI 182

Query: 402 QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASS 461
                         + L  L  + N++    P+ I     NL  L L+ N+         
Sbjct: 183 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD------ 233

Query: 462 KPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSIS 521
               I  L + + L+ LD+++NQIS   P          L  L L  N + ++     ++
Sbjct: 234 ----IGTLASLTNLTDLDLANNQISNLAPLSGLT----KLTELKLGANQISNISPLAGLT 285

Query: 522 GIRFLDLHSNQLRGNIPYMSPNT-SYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSL 580
            +  L+L+ NQL    P  +    +Y+    NN + I   + +       F+   ANN +
Sbjct: 286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFF---ANNKV 341

Query: 581 AGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRN 628
           +     S+   TN   L   +N +S   P   +T+    +  L L   
Sbjct: 342 SD--VSSLANLTNINWLSAGHNQISDLTPLANLTR----ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.8 bits (185), Expect = 5e-15
 Identities = 72/348 (20%), Positives = 123/348 (35%), Gaps = 21/348 (6%)

Query: 56  GLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSL 115
           G+++  G+  L  L  +N            + L NLT L  + ++    A   P    + 
Sbjct: 55  GIKSIDGVEYLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPLANLTN 111

Query: 116 TRLVTLDLSGIVPIEYSYTVWIANLSLFLQN-LTELTELHLDRVDLSASGTEWCKALSFL 174
              +TL  + I  I+    +   N      N +++++ L         S       L  L
Sbjct: 112 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL 171

Query: 175 PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECG 234
            NL  L       +   +  +    +     +  N  +S  T      TNL  L L+   
Sbjct: 172 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL-TNLDELSLNGNQ 230

Query: 235 LQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNL 294
           L+      +  +  L  LDL+ NQ+   +L      + L +L L    +S   P     L
Sbjct: 231 LKD--IGTLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQISNISP-----L 281

Query: 295 ENLTRVEVSSCNF-TGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNN 353
             LT +     N         ++NL  L ++    N+     P +     L  L  + N 
Sbjct: 282 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNK 340

Query: 354 LSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNN 401
           +S  +SS     L N+  +  GHN +S   P  L  L  +  L L++ 
Sbjct: 341 VS-DVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.5 bits (140), Expect = 2e-09
 Identities = 63/414 (15%), Positives = 118/414 (28%), Gaps = 70/414 (16%)

Query: 421 LDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDI 480
             L    +   V  +   +L  + TL         +            ++  + L+ ++ 
Sbjct: 27  TVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKSIDG----------VEYLNNLTQINF 73

Query: 481 SDNQISGEVP--------------NWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFL 526
           S+NQ++   P              N I ++             L  +             
Sbjct: 74  SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 527 DLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPE 586
                     I  +S  +        +F +   D+    + T       ++N        
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK--VSDIS 191

Query: 587 SVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQ 646
            + K TN + L  +NN +S   P  ++T     L+ L+L  N L    +         L 
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILTN----LDELSLNGNQLKDIGT---LASLTNLT 244

Query: 647 ILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGH 706
            LDL+ NQ+  + P  L+    L  L L +N IS+  P     A +              
Sbjct: 245 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNL------ELNENQ 296

Query: 707 ISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYE 766
           +       +   L  + L  N  S       L  +               +   +N+  +
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQR-------------LFFANNKVSD 343

Query: 767 VRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNA 820
           V            L  + NI   +    N      P  +     +  L ++  A
Sbjct: 344 VS----------SLANLTNI-NWLSAGHNQISDLTP--LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 4e-07
 Identities = 44/280 (15%), Positives = 86/280 (30%), Gaps = 28/280 (10%)

Query: 597 LDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQ 656
             L   N++ T+    + +    +  L   R  +              L  ++ S NQL 
Sbjct: 27  TVLGKTNVTDTVSQTDLDQ----VTTLQADRLGIKSIDGVEYLNN---LTQINFSNNQLT 79

Query: 657 GVVPKSLANCNMLQVL--DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKV 714
            + P  L N   L  +  +                          ++          N++
Sbjct: 80  DITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 715 SWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVK 774
                 I D++       L Q      +       +      +++ SN+  ++ V     
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK-- 195

Query: 775 GIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKE 834
                         S+  ++N      P  +G   +L  L+++ N L      +  +L  
Sbjct: 196 ---------LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTN 242

Query: 835 IESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 874
           +  LDL+ N +S   P  L+ L  L+ L L  N +    P
Sbjct: 243 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 280

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.8 bits (208), Expect = 2e-18
 Identities = 54/261 (20%), Positives = 82/261 (31%), Gaps = 10/261 (3%)

Query: 645 LQILDLSGNQLQGV--VPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNN 702
           +  LDLSG  L     +P SLAN   L  L +                 +    +  ++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 703 FSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSN 762
                          L+ +                 L  +V  T  G   N +   +P +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG---NRISGAIPDS 168

Query: 763 QFYEVRVTVTVKGIEIKLLKVPNIFTSIDFS-----SNNFEGPIPVEMGRFRSLYALNMS 817
                ++  ++     +L        +         S N        +            
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 818 HNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTST 877
                       G  K +  LDL  N + G +P  L  L FL  LN+S+NNL G+IP   
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288

Query: 878 QLQSFSPTSYEGNKGLYGPPL 898
            LQ F  ++Y  NK L G PL
Sbjct: 289 NLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.0 bits (180), Expect = 9e-15
 Identities = 78/331 (23%), Positives = 110/331 (33%), Gaps = 48/331 (14%)

Query: 15  STKLSQWSSHQSSDCCD--WSGVRCDEAG---HVIGLDLSWEPIIGGLENATGLFDLQYL 69
            T LS W    ++DCC+  W GV CD       V  LDLS                    
Sbjct: 21  PTTLSSWLP--TTDCCNRTWLGVLCDTDTQTYRVNNLDLS-------------------- 58

Query: 70  QSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQ-GGFAGEIPTEISSLTRLVTLDLSGIVP 128
                G  L K + IPS L NL  L +L +       G IP  I+ LT+L  L ++    
Sbjct: 59  -----GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113

Query: 129 IEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLS 188
                                   L       +A       ++S LPNL  ++  G  +S
Sbjct: 114 SGAIPDFLSQI-----------KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 189 GPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPT 248
           G I         L          L+          NL  +DLS   L+G           
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 249 LETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFT 308
                      L   L     + +L  L L +  + GTLP  +  L+ L  + VS  N  
Sbjct: 223 -TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 309 GPIPPSMANLTQLFHMDFSSNHFF--GPIPS 337
           G I P   NL +     +++N      P+P+
Sbjct: 282 GEI-PQGGNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.4 bits (168), Expect = 4e-13
 Identities = 55/291 (18%), Positives = 93/291 (31%), Gaps = 35/291 (12%)

Query: 340 KSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLS 399
           ++  +NNLDLS  NL                            IP SL  LP L  L + 
Sbjct: 48  QTYRVNNLDLSGLNLPK-----------------------PYPIPSSLANLPYLNFLYIG 84

Query: 400 NNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLA 459
                      +    + L  L ++              +++ L TLD S N        
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNAL------ 137

Query: 460 SSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYS 519
                  P + +   L  +    N+ISG +P+                + L   +   ++
Sbjct: 138 --SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195

Query: 520 ISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNS 579
              + F+DL  N L G+   +  +       +    S+  D+G              NN 
Sbjct: 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255

Query: 580 LAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNL 630
           + G +P+ + +      L++S NNL G IP      +    +V     N  
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG---GNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.8 bits (156), Expect = 1e-11
 Identities = 63/263 (23%), Positives = 95/263 (36%), Gaps = 29/263 (11%)

Query: 168 CKALSFLPNLQVLSLSGCDLSG--PINHYLAKSRSLSVIRLHYNYGLSSG-TEFLAHLTN 224
           C   +    +  L LSG +L    PI   LA    L+ + +     L       +A LT 
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 225 LKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS 284
           L  L ++   + G  P+ +  + TL TLD S N L     P+     +L  +      +S
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 285 GTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNH-------------- 330
           G +PDS G+   L      S N      P       L  +D S N               
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 331 ----------FFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLS 380
                         +  +  S+NLN LDL  N + G +      QL  L  + +  N+L 
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLC 281

Query: 381 GSIPRSLFLLPNLEMLQLSNNQF 403
           G IP     L   ++   +NN+ 
Sbjct: 282 GEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 57/267 (21%), Positives = 90/267 (33%), Gaps = 59/267 (22%)

Query: 273 LRDLILSHTGLSG--TLPDSIGNLENLTRVEVSSC-NFTGPIPPSMANLTQLFHMDFSSN 329
           + +L LS   L     +P S+ NL  L  + +    N  GPIPP++A LTQL ++  +  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 330 HFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL 389
           +  G IP                N   G        L NL  +    N +SG+IP S   
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 390 LPNLEM-LQLSNNQFENQLPEISNVSSSVLFDL--------------------------- 421
              L   + +S N+   ++P      +    DL                           
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 422 ------------------DLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKP 463
                             DL  NR+ G +P     +L+ L++L++S N            
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGE------- 283

Query: 464 RAIPILKNQSQLSVLDISDNQISGEVP 490
             IP   N  +  V   ++N+     P
Sbjct: 284 --IPQGGNLQRFDVSAYANNKCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.2 bits (186), Expect = 2e-15
 Identities = 57/290 (19%), Positives = 105/290 (36%), Gaps = 22/290 (7%)

Query: 224 NLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGL 283
           +L+ +  S+ GL+ K P+ +   P    LDL  N++ +    +F    +L  LIL +  +
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 284 SGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRN 343
           S   P +   L  L R+ +S              L +L   +         + +      
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 344 LNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQF 403
           +  L  +    SG  +  F   +  L  + +   +++ +IP+ L   P+L  L L  N+ 
Sbjct: 128 VVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKI 183

Query: 404 ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKP 463
                  S    + L  L LS N +             +L  L L++NK           
Sbjct: 184 TKVDAA-SLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKL---------V 232

Query: 464 RAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSG----NLKFLNLSHN 509
           +    L +   + V+ + +N IS    N     G      +   ++L  N
Sbjct: 233 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.7 bits (182), Expect = 5e-15
 Identities = 55/264 (20%), Positives = 95/264 (35%), Gaps = 15/264 (5%)

Query: 473 SQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEP--YSISGIRFLDLHS 530
              ++LD+ +N+I+             NL  L L +N +  +       +  +  L L  
Sbjct: 31  PDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 531 NQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCK 590
           NQL+     M      +    N  T +   + N +++             +G+   +   
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 591 ATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDL 650
                 + +++ N++ TIP  L      +L  L+L  N +    + +   G   L  L L
Sbjct: 149 MKKLSYIRIADTNIT-TIPQGL----PPSLTELHLDGNKITKVDAAS-LKGLNNLAKLGL 202

Query: 651 SGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS----GH 706
           S N +  V   SLAN   L+ L L +N +    P  L +   +QV+ L +NN S      
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 707 ISCPRNKVSWPLLQIVDLACNKFS 730
              P           V L  N   
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.9 bits (180), Expect = 9e-15
 Identities = 56/291 (19%), Positives = 99/291 (34%), Gaps = 22/291 (7%)

Query: 93  NLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTE 152
           +L  +  S  G   ++P ++   T L+ L  + I  I+              +NL  L  
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIK----------DGDFKNLKNLHT 59

Query: 153 LHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGL 212
           L L    +S        A + L  L+ L LS   L           + L   R+H N   
Sbjct: 60  LILINNKIS---KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL---RVHENEIT 113

Query: 213 SSGTEFLAHLTNLKALDLSECGLQ--GKFPEKILHVPTLETLDLSINQLLQGSLPNFPKN 270
                    L  +  ++L    L+  G        +  L  + ++   +        P  
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP-- 171

Query: 271 SSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNH 330
            SL +L L    ++     S+  L NL ++ +S  + +     S+AN   L  +  ++N 
Sbjct: 172 -SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 230

Query: 331 FFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG 381
                  L   + +  + L  NN+S   S+ F     N +       SL  
Sbjct: 231 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 1e-12
 Identities = 58/295 (19%), Positives = 101/295 (34%), Gaps = 43/295 (14%)

Query: 341 SRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSN 400
             +   LDL  N ++      F   L NL  ++L +N +S   P +   L  LE L LS 
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 401 NQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLAS 460
           NQ +  LPE    +   L   +    ++      S+F  L  +  ++L +N         
Sbjct: 89  NQLKE-LPEKMPKTLQELRVHENEITKV----RKSVFNGLNQMIVVELGTNPLKSS---- 139

Query: 461 SKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSI 520
                    +   +LS + I+D  I+                   +   L  SL E    
Sbjct: 140 --GIENGAFQGMKKLSYIRIADTNIT------------------TIPQGLPPSLTE---- 175

Query: 521 SGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSL 580
                L L  N++           + +     +F SI A     ++ T +   +  NN+ 
Sbjct: 176 -----LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 230

Query: 581 AGVIPESVCKATNFQVLDLSNNNLS----GTIPACLITKSSSTLEVLNLGRNNLN 631
              +P  +      QV+ L NNN+S                ++   ++L  N + 
Sbjct: 231 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.6 bits (161), Expect = 3e-12
 Identities = 47/228 (20%), Positives = 81/228 (35%), Gaps = 9/228 (3%)

Query: 645 LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS 704
             +LDL  N++  +      N   L  L L +N IS   P        L+ L L  N   
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 705 G---HISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPS 761
                +     ++     +I  +  + F+  L+Q  ++ +     KS    N     M  
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFN-GLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 762 NQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNAL 821
             +  +  T     I      +P   T +    N         +    +L  L +S N++
Sbjct: 152 LSYIRIADT----NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 822 TGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
           +     S  N   +  L L+ N L  K+P  LA   ++ V+ L  NN+
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 254

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 6e-06
 Identities = 27/117 (23%), Positives = 39/117 (33%)

Query: 809 RSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 868
                L++ +N +T      F NLK + +L L  N +S   P   A L  L  L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 869 LVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQARPPELPPSPPPASSGEIDWFF 925
           L        +              +        +Q    EL  +P  +S  E   F 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 18/87 (20%), Positives = 34/87 (39%)

Query: 783 VPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSM 842
           +P     +D  +N        +    ++L+ L + +N ++   P +F  L ++E L LS 
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 843 NNLSGKIPAQLASLNFLSVLNLSYNNL 869
           N L         +L  L V       +
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKV 115

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 4e-12
 Identities = 46/277 (16%), Positives = 93/277 (33%), Gaps = 20/277 (7%)

Query: 595 QVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ 654
           Q LDL+  NL   +   L+   S  +      R+ ++  L++   P    +Q +DLS + 
Sbjct: 3   QTLDLTGKNLHPDVTGRLL---SQGVIAFRCPRSFMDQPLAEHFSP--FRVQHMDLSNSV 57

Query: 655 LQGV-VPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNK 713
           ++   +   L+ C+ LQ L L    +SD     L   S+L  L L   +     +     
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 714 VSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTV 773
            S   L  ++L+          +  +  +       +   +      S+    VR     
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR----- 172

Query: 774 KGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSH-NALTGSIPSSFGNL 832
                   + PN+       S   +     E  +   L  L++S    +        G +
Sbjct: 173 --------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 224

Query: 833 KEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
             +++L +      G +     +L  L +    +  +
Sbjct: 225 PTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTI 261

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (147), Expect = 1e-10
 Identities = 45/278 (16%), Positives = 87/278 (31%), Gaps = 18/278 (6%)

Query: 228 LDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSG-T 286
           LDL+   L      ++L    +       +  +   L        ++ + LS++ +   T
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVI-AFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 287 LPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNN 346
           L   +     L  + +     + PI  ++A  + L  ++ S    F          + + 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 347 LDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG--------SIPRSLFLLPNLEMLQL 398
           LD    +     +    +  +      +   +LSG         +   +   PNL  L L
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 399 SNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSR--L 456
           S++              + L  L LS      P  +    E+  L TL +          
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 457 KLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIW 494
            L  + P    +  N S  +   I+   I  +    IW
Sbjct: 243 LLKEALPH---LQINCSHFT--TIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 7e-09
 Identities = 35/264 (13%), Positives = 83/264 (31%), Gaps = 7/264 (2%)

Query: 298 TRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGG 357
             ++++  N    +   + +   +       +    P+        + ++DLS + +   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 358 ISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSV 417
                  Q   LQ + L    LS  I  +L    NL   +L+ +              S 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV--RLNLSGCSGFSEFALQTLLSS 119

Query: 418 LFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSV 477
              LD                      +  ++    S  +    K     +++    L  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 478 LDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISG---IRFLDLHSNQLR 534
           LD+SD+ +        +   +  L+ L+LS    +  +    +     ++ L +      
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 535 GNIPYMSPNTSYVDYSNNNFTSIP 558
           G +  +     ++  + ++FT+I 
Sbjct: 239 GTLQLLKEALPHLQINCSHFTTIA 262

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 41/242 (16%), Positives = 84/242 (34%), Gaps = 14/242 (5%)

Query: 62  GLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTL 121
             F    +Q ++L  ++ +   +   L   + L  L+L     +  I   ++  + LV L
Sbjct: 41  EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100

Query: 122 DLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLS 181
           +      +          L   L + + L EL+L                     +  L+
Sbjct: 101 N------LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 154

Query: 182 LSGCDLSGPINHYLAKSRSLSVIRLHYNYGL----SSGTEFLAHLTNLKALDLSEC-GLQ 236
           LSG   +   +      R    +            +   +    L  L+ L LS C  + 
Sbjct: 155 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 214

Query: 237 GKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLEN 296
            +   ++  +PTL+TL +    +  G+L    +  +L  L ++ +  +     +IGN +N
Sbjct: 215 PETLLELGEIPTLKTLQVF-GIVPDGTLQLLKE--ALPHLQINCSHFTTIARPTIGNKKN 271

Query: 297 LT 298
             
Sbjct: 272 QE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 5e-04
 Identities = 45/280 (16%), Positives = 92/280 (32%), Gaps = 24/280 (8%)

Query: 46  LDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFA 105
           LDL+ + +       TG    Q + +     +     Q  +   +   + +++LS     
Sbjct: 5   LDLTGKNLHPD---VTGRLLSQGVIAFRCPRSFMD--QPLAEHFSPFRVQHMDLSNSVIE 59

Query: 106 GE-IPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDL---- 160
              +   +S  ++L  L                  +   L   + L  L+L         
Sbjct: 60  VSTLHGILSQCSKLQNLS--------LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 111

Query: 161 -SASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFL 219
              +    C  L  L        +   +   + H       L++     N   S  +  +
Sbjct: 112 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 171

Query: 220 AHLTNLKALDLSECGLQ-GKFPEKILHVPTLETLDLS-INQLLQGSLPNFPKNSSLRDLI 277
               NL  LDLS+  +      ++   +  L+ L LS    ++  +L    +  +L+ L 
Sbjct: 172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 231

Query: 278 LSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMAN 317
           +      GTL       E L  ++++  +FT    P++ N
Sbjct: 232 VFGIVPDGTLQLLK---EALPHLQINCSHFTTIARPTIGN 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 3e-11
 Identities = 47/325 (14%), Positives = 88/325 (27%), Gaps = 57/325 (17%)

Query: 547 VDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSG 606
                    ++P  I                                 Q + L  N +S 
Sbjct: 16  TSCPQQGLQAVPVGIP-----------------------------AASQRIFLHGNRISH 46

Query: 607 TIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANC 666
              A    ++   L +L L  N L    +          Q+      QL+ V P +    
Sbjct: 47  VPAASF--RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104

Query: 667 NMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLAC 726
             L  L L    + +  P   R  ++LQ L L+ N                 L  + L  
Sbjct: 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP--DDTFRDLGNLTHLFLHG 162

Query: 727 NKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNI 786
           N+ S     +     + +  +     N +    P                     +    
Sbjct: 163 NRISS--VPERAFRGLHSLDRLLLHQNRVAHVHPHA------------------FRDLGR 202

Query: 787 FTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS 846
             ++   +NN        +   R+L  L ++ N       +       ++    S + + 
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVP 261

Query: 847 GKIPAQLASLNFLSVLNLSYNNLVG 871
             +P +LA      +  L+ N+L G
Sbjct: 262 CSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 4e-10
 Identities = 41/299 (13%), Positives = 77/299 (25%), Gaps = 40/299 (13%)

Query: 83  QIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSL 142
            +P  +        + L     +        +   L                  +     
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTI----------LWLHSNVLARID 72

Query: 143 FLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLS 202
                       LD  D +   +        L  L  L L  C L            +L 
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 203 VIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQG 262
            + L  N                         LQ    +    +  L  L L  N++   
Sbjct: 133 YLYLQDN------------------------ALQALPDDTFRDLGNLTHLFLHGNRISSV 168

Query: 263 SLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLF 322
               F    SL  L+L    ++   P +  +L  L  + + + N +     ++A L  L 
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228

Query: 323 HMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG 381
           ++  + N +     +      L     S + +   +     ++L    +  L  N L G
Sbjct: 229 YLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP----QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 43/281 (15%), Positives = 77/281 (27%), Gaps = 31/281 (11%)

Query: 175 PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLH-YNYGLSSGTEFLAHLTNLKALDLSEC 233
              Q + L G  +S          R+L+++ LH           F       +       
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 234 GLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGN 293
            L+   P     +  L TL L    L +     F   ++L+ L L    L     D+  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 294 LENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNN 353
           L NLT + +     +     +   L  L  +    N      P   +          F N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 354 LSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNV 413
               + +     L                          L+ L+L++N +          
Sbjct: 212 NLSALPTEALAPL------------------------RALQYLRLNDNPWVCDCRARPLW 247

Query: 414 SSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFS 454
           +   L     S + +   +P      L       L++N   
Sbjct: 248 AW--LQKFRGSSSEVPCSLPQR----LAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 47/329 (14%), Positives = 84/329 (25%), Gaps = 54/329 (16%)

Query: 519 SISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANN 578
                         L+     +   +  +    N  + +PA            +  +   
Sbjct: 9   YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL 68

Query: 579 SLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTI 638
           +   +   +       + LDLS+N    ++           L  L+L R      L   +
Sbjct: 69  A--RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG-RLHTLHLDRCG-LQELGPGL 124

Query: 639 FPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL 698
           F G   LQ L L  N LQ +   +  +   L  L L  N IS       R   SL  L+L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 699 RSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIE 758
             N  +                                  L  ++      + ++ L  E
Sbjct: 185 HQNRVAHVHP-------------------------HAFRDLGRLMTLYLFANNLSALPTE 219

Query: 759 MPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSH 818
             +                            +  + N +          +  L     S 
Sbjct: 220 ALAPLRA---------------------LQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSS 257

Query: 819 NALTGSIPSSFGNLKEIESLDLSMNNLSG 847
           + +  S+P             L+ N+L G
Sbjct: 258 SEVPCSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 50/313 (15%), Positives = 101/313 (32%), Gaps = 41/313 (13%)

Query: 295 ENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP-SLHKSRNLNNLDLSFNN 353
           E               +P  +   +Q   +    N        S    RNL  L L  N 
Sbjct: 11  EPKVTTSCPQQGLQA-VPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 354 LSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNV 413
           L+   ++ F    L  Q+ +  +  L    P +   L  L  L L     +   P +   
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 414 SSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQS 473
            ++ L  L L  N L+       F +L NL  L L  N+ S +             +   
Sbjct: 128 LAA-LQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSV--------PERAFRGLH 177

Query: 474 QLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQL 533
            L  L +  N+++   P+   ++G     +L  ++   +  +    +  +++L L+ N  
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Query: 534 RGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATN 593
             +     P  +++     +                       ++ +   +P+ +     
Sbjct: 238 VCDCR-ARPLWAWLQKFRGS-----------------------SSEVPCSLPQRL---AG 270

Query: 594 FQVLDLSNNNLSG 606
             +  L+ N+L G
Sbjct: 271 RDLKRLAANDLQG 283

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (154), Expect = 3e-11
 Identities = 46/449 (10%), Positives = 107/449 (23%), Gaps = 19/449 (4%)

Query: 421 LDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIP-ILKNQSQLSVLD 479
           LD+    L       +   L+    + L     +      ++ + I   L+    L+ L+
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-----EARCKDISSALRVNPALAELN 61

Query: 480 ISDNQISGEVPNWIWE---VGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGN 536
           +  N++     + + +     S  ++ L+L +  +         S +R L         +
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 537 IPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQV 596
                     +     +       +                + L           +N  +
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 597 LDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQ 656
            +     L   +        +  LE   +  +N                  L  +     
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 657 GVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSW 716
           G+        +    L                      +    S                
Sbjct: 242 GMAELCPGLLHPSSRLRTL-WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 717 PLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGI 776
            LL    L        L  K         +   S +      +             V+ +
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 777 EIKLLKVPNIFTSIDFSSNNFEG----PIPVEMGRFRSLYALNMSHNALTGSIPSSFG-- 830
              L +  ++   +  +  +        +   +    SL  L++S+N L  +        
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 831 ---NLKEIESLDLSMNNLSGKIPAQLASL 856
                  +E L L     S ++  +L +L
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 2e-09
 Identities = 49/465 (10%), Positives = 115/465 (24%), Gaps = 26/465 (5%)

Query: 249 LETLDLSINQLLQGSLPN-FPKNSSLRDLILSHTGLSG----TLPDSIGNLENLTRVEVS 303
           +++LD+   +L         P     + + L   GL+      +  ++     L  + + 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 304 SCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFW 363
           S          +    Q                +      L++   +   L     S   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 364 EQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDL 423
                LQ++  G       + +      +L            +        +    D++ 
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 424 SGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDN 483
           +G R+          +L  L          +       +     +    S   +   S+ 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDN------CRDLCGIVASKASLRELALGSNK 237

Query: 484 QISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPN 543
                +      +   + +   L         +             S +          +
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297

Query: 544 TSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNN 603
                               ++    +     ++ S        + +            +
Sbjct: 298 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN---RLED 354

Query: 604 LSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTI---FPGDCGLQILDLSGNQLQGVVP 660
                    + +  S L VL L   +++ +   ++      +  L+ LDLS N L     
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414

Query: 661 KSLA-----NCNMLQVLDLRSNYISDNFPCWLRNAS----SLQVL 696
             L         +L+ L L   Y S+     L+       SL+V+
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (139), Expect = 2e-09
 Identities = 47/453 (10%), Positives = 108/453 (23%), Gaps = 32/453 (7%)

Query: 442 NLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGN- 500
           ++ +LD+   + S  + A        +L    Q  V+ + D  ++      I      N 
Sbjct: 3   DIQSLDIQCEELSDARWAE-------LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP 55

Query: 501 -LKFLNLSHN---------LVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYS 550
            L  LNL  N         ++  LQ P     I+ L L +              S    +
Sbjct: 56  ALAELNLRSNELGDVGVHCVLQGLQTPS--CKIQKLSLQNCC---LTGAGCGVLSSTLRT 110

Query: 551 NNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPA 610
                 +                    +    +    +   +          ++    P 
Sbjct: 111 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD 170

Query: 611 CLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQ 670
                 S+        R    G            L+   ++ +  + +     +  ++ +
Sbjct: 171 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 230

Query: 671 VLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFS 730
           +    +                    +     +   I+         +L+  +       
Sbjct: 231 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 290

Query: 731 GRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSI 790
                      ++ ET          + + S  F     +     +      +    ++ 
Sbjct: 291 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 350

Query: 791 DFSSNNFEGPIPVEMGRFRSLYALNMSHNALTG----SIPSSFGNLKEIESLDLSMNNLS 846
                               L  L ++   ++     S+ ++      +  LDLS N L 
Sbjct: 351 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 410

Query: 847 GKIPAQLAS-----LNFLSVLNLSYNNLVGKIP 874
                QL          L  L L       ++ 
Sbjct: 411 DAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 3e-07
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 4/104 (3%)

Query: 617 SSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGV----VPKSLANCNMLQVL 672
           S  ++ L++    L+      + P     Q++ L    L       +  +L     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSW 716
           +LRSN + D     +          ++  +              
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 3e-07
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 341 SRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG----SIPRSLFLLPNLEML 396
           S ++ +LD+    LS    +     L   Q+V L    L+      I  +L + P L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 397 QLSNNQFENQ----LPEISNVSSSVLFDLDLSGN 426
            L +N+  +     + +     S  +  L L   
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 4e-05
 Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 27/112 (24%)

Query: 149 ELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHY 208
           ++  L +   +LS +   W + L  L   QV+ L  C L+      ++ +          
Sbjct: 3   DIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSA---------- 50

Query: 209 NYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHV-----PTLETLDLS 255
                     L     L  L+L    L       +L         ++ L L 
Sbjct: 51  ----------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 2e-04
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 367 LNLQIVVLGHNSLSGSIPRSLF-LLPNLEMLQLSNNQF-ENQLPEISNV--SSSVLFDLD 422
           L++Q + +    LS +    L  LL   ++++L +    E +  +IS+    +  L +L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 423 LSGNRLEGPVPISIFFELR----NLYTLDLSSNKF 453
           L  N L       +   L+     +  L L +   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 10/93 (10%)

Query: 198 SRSLSVIRLHYNY-GLSSGTEFLAHLTNLKALDLSECGLQGK----FPEKILHVPTLETL 252
           S  +  + +       +   E L  L   + + L +CGL           +   P L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 253 DLSINQLLQGSLPNFPK-----NSSLRDLILSH 280
           +L  N+L    +    +     +  ++ L L +
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.002
 Identities = 20/122 (16%), Positives = 34/122 (27%), Gaps = 24/122 (19%)

Query: 136 WIANLSLFLQNLTELTELHLDRVDLSASGTEW-CKALSFLPNLQVLSLSGCDLSGPINHY 194
                    Q  + L  L L   D+S S        L    +L+ L LS   L       
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 195 LAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHV----PTLE 250
           L +S                          L+ L L +     +  +++  +    P+L 
Sbjct: 417 LVES-------------------VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

Query: 251 TL 252
            +
Sbjct: 458 VI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.004
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 368 NLQIVVLGHNSLSG----SIPRSLFLLPNLEMLQLSNNQFENQ----LPEISNVSSSVLF 419
            L+++ L    +S     S+  +L    +L  L LSNN   +     L E       +L 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 420 DLDLSGNRLEGPVPISIFFELRNLYTLDLSS 450
            L L        +   +    ++  +L + S
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.004
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 138 ANLSLFLQNLTELTELHLDRVDLSASGTEW-CKALSFLPNLQVLSLSGCDLSGPINHYLA 196
           A  +  L  L +   + LD   L+ +  +    AL   P L  L+L   +L     H + 
Sbjct: 17  ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 76

Query: 197 KSRSLSVIRLHY 208
           +       ++  
Sbjct: 77  QGLQTPSCKIQK 88

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 4e-10
 Identities = 45/237 (18%), Positives = 76/237 (32%), Gaps = 31/237 (13%)

Query: 609 PACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM 668
           P C ++K +S LEV N  + NL   L   +        IL LS N L      +L     
Sbjct: 2   PICEVSKVASHLEV-NCDKRNLT-ALPPDLPKD---TTILHLSENLLYTFSLATLMPYTR 56

Query: 669 LQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNK 728
           L  L+L    ++           +L VL     + +   S P    + P L ++D++ N+
Sbjct: 57  LTQLNLDRAELTKLQVDG-----TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111

Query: 729 FSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFT 788
            +        L  +    +   + N L    P                            
Sbjct: 112 LTS--LPLGALRGLGELQELYLKGNELKTLPPGLLTP------------------TPKLE 151

Query: 789 SIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNL 845
            +  ++NN        +    +L  L +  N+L  +IP  F     +    L  N  
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 6e-08
 Identities = 36/208 (17%), Positives = 55/208 (26%), Gaps = 8/208 (3%)

Query: 221 HLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSH 280
            + +   ++  +  L    P  +        L LS N L   SL      + L  L L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 281 TGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHK 340
                T     G L  L  +++S                    +D S N          +
Sbjct: 65  A--ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL-TVLDVSFNRLTSLPLGALR 121

Query: 341 SRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSN 400
                       N    +          L+ + L +N+L+      L  L NL+ L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 401 NQFENQLPEISNVSSSVLFDLDLSGNRL 428
           N                L    L GN  
Sbjct: 182 NSLYTIPKGFFGSHL--LPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 4e-07
 Identities = 43/224 (19%), Positives = 72/224 (32%), Gaps = 17/224 (7%)

Query: 433 PISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNW 492
           PI    ++ +   ++      + L      P  +P        ++L +S+N +       
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTAL------PPDLP-----KDTTILHLSENLLYTFSLAT 50

Query: 493 IWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNN 552
           +       L  LNL    +  LQ   ++  +  LDL  NQL+          +      +
Sbjct: 51  LM--PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108

Query: 553 NFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACL 612
                   +G      E        N L  + P  +      + L L+NNNL+      L
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168

Query: 613 ITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQ 656
                  L+ L L + N   T+    F G   L    L GN   
Sbjct: 169 --NGLENLDTLLL-QENSLYTIPKGFF-GSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 35/215 (16%), Positives = 60/215 (27%), Gaps = 17/215 (7%)

Query: 269 KNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSS 328
           K +S  ++      L+  LP  +    + T + +S          ++   T+L  ++   
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 329 NHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLF 388
                          L  L     + +   S     Q L    V+    +   S+P    
Sbjct: 65  AELTKL----QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 389 LLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDL 448
                             LP      +  L  L L+ N L   +P  +   L NL TL L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLL 179

Query: 449 SSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDN 483
             N    +      P+          L    +  N
Sbjct: 180 QENSLYTI------PKGFFGSHL---LPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 5e-05
 Identities = 36/198 (18%), Positives = 55/198 (27%), Gaps = 17/198 (8%)

Query: 83  QIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSL 142
            +P  L    + T L+LS+          +   TRL  L+L      +      +  L  
Sbjct: 24  ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81

Query: 143 FLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLS 202
              +  +L  L L    L A                        L+      L     L 
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVS--------------FNRLTSLPLGALRGLGELQ 127

Query: 203 VIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQG 262
            + L  N   +     L     L+ L L+   L       +  +  L+TL L  N L   
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187

Query: 263 SLPNFPKNSSLRDLILSH 280
               F  +  L    L  
Sbjct: 188 P-KGFFGSHLLPFAFLHG 204

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 5e-05
 Identities = 39/209 (18%), Positives = 64/209 (30%), Gaps = 9/209 (4%)

Query: 146 NLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIR 205
            +    E++ D+ +L+A   +         +  +L LS   L       L     L+ + 
Sbjct: 8   KVASHLEVNCDKRNLTALPPD------LPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 206 LHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLP 265
           L          +    L  L  LDLS   LQ                D+S N+L    L 
Sbjct: 62  LDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLG 118

Query: 266 NFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMD 325
                  L++L L    L    P  +     L ++ +++ N T      +  L  L  + 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 326 FSSNHFFGPIPSLHKSRNLNNLDLSFNNL 354
              N  +        S  L    L  N  
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 5e-04
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 804 EMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLN 863
           E+ +  S   +N     LT ++P      K+   L LS N L     A L     L+ LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 864 LSYNN 868
           L    
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 7e-04
 Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 11/224 (4%)

Query: 519 SISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANN 578
            ++    ++     L    P +  +T+ +  S N   +         +            
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN------ 61

Query: 579 SLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTI 638
            L       +       VL   + + +      L+ ++   L VL++  N L   L    
Sbjct: 62  -LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGA 119

Query: 639 FPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL 698
             G   LQ L L GN+L+ + P  L     L+ L L +N +++     L    +L  L+L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 699 RSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMM 742
           + N+     + P+      LL    L  N +       +    +
Sbjct: 180 QENSL---YTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL 220

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 31/216 (14%), Positives = 60/216 (27%), Gaps = 24/216 (11%)

Query: 334 PIPSLHKSRNLNNLDLSFNNLS---GGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLL 390
           PI  + K  +   ++    NL+     +         +  I+ L  N L      +L   
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLPK-------DTTILHLSENLLYTFSLATLMPY 54

Query: 391 PNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSS 450
             L  L L   +      + +      L         L           + ++    L+S
Sbjct: 55  TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114

Query: 451 NKFSRLKLASSKPRAIPILKNQSQLS-----------VLDISDNQISGEVPNWIWEVGSG 499
                L+                 L             L +++N ++      +   G  
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN--GLE 172

Query: 500 NLKFLNLSHNLVVSLQEP-YSISGIRFLDLHSNQLR 534
           NL  L L  N + ++ +  +    + F  LH N   
Sbjct: 173 NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 59.8 bits (143), Expect = 6e-10
 Identities = 55/331 (16%), Positives = 107/331 (32%), Gaps = 21/331 (6%)

Query: 342 RNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLL--PNLEMLQLS 399
           R  + L+L+   LS     +  E   +L+ +V   NSL+  +P     L    ++   L 
Sbjct: 38  RQAHELELNNLGLS-----SLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 400 NNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLA 459
                  L E   VS++ L  L    N     +       L+ L  L  S    +     
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 460 SSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYS 519
             +   +  L   + +   + S  ++     +    V   N+         +  L   Y+
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 520 ISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNS 579
            + +             +       + +     + T +      F   +E    +   N+
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 580 LAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIF 639
            +  I        + + L++SNN L   +PA         LE L    N+L       + 
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP-----PRLERLIASFNHLA-----EVP 320

Query: 640 PGDCGLQILDLSGNQLQGV--VPKSLANCNM 668
                L+ L +  N L+    +P+S+ +  M
Sbjct: 321 ELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 53/317 (16%), Positives = 99/317 (31%), Gaps = 20/317 (6%)

Query: 223 TNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDL----IL 278
                L+L+  GL    PE     P LE+L  S N L    LP  P++     +    + 
Sbjct: 38  RQAHELELNNLGLS-SLPELP---PHLESLVASCNSL--TELPELPQSLKSLLVDNNNLK 91

Query: 279 SHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSL 338
           + + L   L     +   L ++     +    I     N  +       S  F     + 
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 339 HKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQL 398
            +             +    +S      L L +  +   +        L  LP L  +  
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 399 SNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKL 458
            NN  +       ++ +  + D  L+           +         L         L  
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 459 ASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPY 518
           +S++ R++        L  L++S+N++  E+P          L+ L  S N +  +  P 
Sbjct: 272 SSNEIRSLCD--LPPSLEELNVSNNKLI-ELPALP-----PRLERLIASFNHLAEV--PE 321

Query: 519 SISGIRFLDLHSNQLRG 535
               ++ L +  N LR 
Sbjct: 322 LPQNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 206 LHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLP 265
            + N   +          +L+ L++S   L  + P      P LE L  S N L    +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHL--AEVP 320

Query: 266 NFPKNSSLRDLILSHTGLSGTLPDSIGNLENL 297
             P+N  L+ L + +  L    PD   ++E+L
Sbjct: 321 ELPQN--LKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 47/343 (13%), Positives = 90/343 (26%), Gaps = 27/343 (7%)

Query: 521 SGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSL 580
                L+L++  L  ++P + P+   +  S N+ T +P    +  S       + A + L
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 96

Query: 581 AGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFP 640
             ++          + L    N+    I            ++         G       P
Sbjct: 97  PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 156

Query: 641 GDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRS 700
               L  L         +        ++  ++   +          L        L    
Sbjct: 157 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF------LTTIY 210

Query: 701 NNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMP 760
            + +   + P    S   L + D               L +                   
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVS-----------ENIFSGL 259

Query: 761 SNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNA 820
           S     +            L  +P     ++ S+N     +P    R   L     S N 
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL---IASFNH 315

Query: 821 LTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLN 863
           L   +P    NLK+   L +  N L  + P    S+  L + +
Sbjct: 316 LA-EVPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 7e-06
 Identities = 43/311 (13%), Positives = 90/311 (28%), Gaps = 31/311 (9%)

Query: 589 CKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQIL 648
           C       L+L+N  LS ++P          LE L    N+L       +      L+ L
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELP-----PHLESLVASCNSLT-----ELPELPQSLKSL 83

Query: 649 DLSGNQLQGV--VPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGH 706
            +  N L+ +  +P  L    +      +   + ++    + +  +  +  L     S  
Sbjct: 84  LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143

Query: 707 ISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYE 766
                N     L ++ +L         +        +  +       +  +E        
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 203

Query: 767 VRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNM---------- 816
             +T       +         +    +  +       E+ +  +   ++           
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 817 ----SHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGK 872
                 NA +  I S       +E L++S N L  ++PA       L  L  S+N+L   
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAEV 319

Query: 873 IPTSTQLQSFS 883
                 L+   
Sbjct: 320 PELPQNLKQLH 330

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 6e-05
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 9/92 (9%)

Query: 230 LSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPD 289
                   +        P+LE L++S N+L+   LP  P    L  LI S   L+  +P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI--ELPALPPR--LERLIASFNHLA-EVPE 321

Query: 290 SIGNLENLTRVEVSSCNFTGPIPPSMANLTQL 321
              NL+ L    V         P    ++  L
Sbjct: 322 LPQNLKQL---HVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 9e-05
 Identities = 46/295 (15%), Positives = 85/295 (28%), Gaps = 7/295 (2%)

Query: 270 NSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSN 329
           +    +L L++ GLS +LP+   +LE+L     +SCN    +P    +L  L   + +  
Sbjct: 37  DRQAHELELNNLGLS-SLPELPPHLESLV----ASCNSLTELPELPQSLKSLLVDNNNLK 91

Query: 330 HFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQL-LNLQIVVLGHNSLSGSIPRSLF 388
                 P L      NN       L         +    +L+ +     SL      +  
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 389 LLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDL 448
           L    E+  L                  +   L+           +     L  L T+  
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 449 SSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSH 508
            +N    L        A+ +  N                   N    +         L+ 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 509 NLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGN 563
           +             +  L++ +N+L   +P + P    +  S N+   +P    N
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAEVPELPQN 325

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 13/89 (14%)

Query: 322 FHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG 381
           ++++ SSN             +L  L++S N L              L+ ++   N L+ 
Sbjct: 267 YYLNASSNEIRSLCDLPP---SLEELNVSNNKL-----IELPALPPRLERLIASFNHLA- 317

Query: 382 SIPRSLFLLPNLEMLQLSNNQFENQLPEI 410
            +P    L  NL+ L +  N    + P+I
Sbjct: 318 EVPE---LPQNLKQLHVEYNPLR-EFPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 46/328 (14%), Positives = 90/328 (27%), Gaps = 22/328 (6%)

Query: 389 LLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDL 448
           L      L+L+N    +      ++ S     L  S N L       +    ++L +L +
Sbjct: 36  LDRQAHELELNNLGLSSLPELPPHLES-----LVASCNSLT-----ELPELPQSLKSLLV 85

Query: 449 SSNKFSRLK-LASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLS 507
            +N    L  L               +L  L  S      +V N   +        L   
Sbjct: 86  DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 508 HNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSE 567
                 L+E   +  + FL                  S       N           +  
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 568 TEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNL-- 625
               Y           +P S+               L  ++    ++++  +        
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265

Query: 626 -GRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFP 684
               N +     ++      L+ L++S N+L  + P        L+ L    N++++  P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-PALPPR---LERLIASFNHLAE-VP 320

Query: 685 CWLRNASSLQVLVLRSNNFSGHISCPRN 712
              +N   L+ L +  N        P +
Sbjct: 321 ELPQN---LKQLHVEYNPLREFPDIPES 345

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 57/342 (16%), Positives = 100/342 (29%), Gaps = 36/342 (10%)

Query: 199 RSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKI--LHVPTLETLDLSI 256
           R    + L+   GLSS  E   HL +   L  S   L  + PE    L    ++  +L  
Sbjct: 38  RQAHELELNNL-GLSSLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 257 NQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMA 316
              L   L     +++  + +      S      + N       ++           +  
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 317 ----NLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIV 372
                L  L  +                  +L ++    N L           L  +   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 373 VLGHNSLSGSIPRSLFLLPNL----EMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRL 428
                +L    P    L        ++ +L  +     + E      S L       N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 429 EGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGE 488
              +   +     +L  L++S+NK   L      P   P      +L  L  S N ++ E
Sbjct: 273 SNEIRS-LCDLPPSLEELNVSNNKLIEL------PALPP------RLERLIASFNHLA-E 318

Query: 489 VPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHS 530
           VP         NLK L++ +N +     P     +  L ++S
Sbjct: 319 VPELP-----QNLKQLHVEYNPLREF--PDIPESVEDLRMNS 353

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.4 bits (125), Expect = 9e-09
 Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 274 RDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFG 333
           R L L+H  L  T+   +  L  +T +++S        PP++A L  L  +  S N    
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALE- 56

Query: 334 PIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLS---GSIPRSLFLL 390
            +  +     L  L L  N L    +         L ++ L  NSL    G   R   +L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 391 PNLEML 396
           P++  +
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.6 bits (115), Expect = 2e-07
 Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 347 LDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQ 406
           L L+  +L+        EQLL +  + L HN L    P     L  L  L++        
Sbjct: 3   LHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNAL 55

Query: 407 LPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRL 456
                  +   L +L L  NRL+    I        L  L+L  N   + 
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 3/106 (2%)

Query: 502 KFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADI 561
           + L+L+H  +  L     +  +  LDL  N+LR   P ++          ++      D 
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 562 GNFMSETEYFYFVAANNSLAGV-IPESVCKATNFQVLDLSNNNLSG 606
              +   +       NN L      + +       +L+L  N+L  
Sbjct: 61  VANLPRLQELLL--CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 17/126 (13%)

Query: 445 TLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFL 504
            L L+    + L            L+    ++ LD+S N++    P          L+ L
Sbjct: 2   VLHLAHKDLTVL----------CHLEQLLLVTHLDLSHNRLRALPPALAA---LRCLEVL 48

Query: 505 NLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMS----PNTSYVDYSNNNFTSIPAD 560
             S N + ++    ++  ++ L L +N+L+ +         P    ++   N+       
Sbjct: 49  QASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

Query: 561 IGNFMS 566
                 
Sbjct: 109 QERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 9/107 (8%)

Query: 576 ANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLS 635
           A+  L   +   + +      LDLS+N L    PA       + L  L + + + N   +
Sbjct: 6   AHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPAL------AALRCLEVLQASDNALEN 57

Query: 636 DTIFPGDCGLQILDLSGNQLQGV-VPKSLANCNMLQVLDLRSNYISD 681
                    LQ L L  N+LQ     + L +C  L +L+L+ N +  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 595 QVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ 654
           +VL L++ +L  T+   L  +    +  L+L  N L              L++L    + 
Sbjct: 1   RVLHLAHKDL--TVLCHL--EQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQ--ASD 52

Query: 655 LQGVVPKSLANCNMLQVLDLRSNYISD-NFPCWLRNASSLQVLVLRSNNFSG 705
                   +AN   LQ L L +N +        L +   L +L L+ N+   
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 24/118 (20%)

Query: 790 IDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPS---------------------S 828
           +  +  +    +   + +   +  L++SHN L    P+                      
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 829 FGNLKEIESLDLSMNNL-SGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 885
             NL  ++ L L  N L        L S   L +LNL  N+L  +     +L    P+
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.0 bits (123), Expect = 9e-08
 Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 20/238 (8%)

Query: 631 NGTLSDTIFPGDCGLQ---ILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWL 687
             T  + IFP D  L     +    + +   V  + A+ + +  L      ++      +
Sbjct: 5   QPTAINVIFP-DPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT--IEGV 59

Query: 688 RNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETK 747
           +  ++L  L L+ N  +                            L     +  + +   
Sbjct: 60  QYLNNLIGLELKDNQITDLAPLKNLTKIT--------ELELSGNPLKNVSAIAGLQSIKT 111

Query: 748 SGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGR 807
                  +    P      ++V          +  +  +      S  N +      +  
Sbjct: 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLAN 171

Query: 808 FRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLS 865
              L  L    N ++   P    +L  +  + L  N +S   P  LA+ + L ++ L+
Sbjct: 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 36/223 (16%), Positives = 69/223 (30%), Gaps = 17/223 (7%)

Query: 202 SVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQ 261
           + I++       + T   A L  +  L     G+     E + ++  L  L+L  NQ+  
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITD 77

Query: 262 GSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQL 321
            +        +  +L  +       +                +         ++  L   
Sbjct: 78  LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137

Query: 322 FHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG 381
            +   + +   G     + S                   T    L  L  +    N +S 
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQ----------VSDLTPLANLSKLTTLKADDNKISD 187

Query: 382 SIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLS 424
             P  L  LPNL  + L NNQ  + +  ++N S+  LF + L+
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISD-VSPLANTSN--LFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 37/226 (16%), Positives = 73/226 (32%), Gaps = 40/226 (17%)

Query: 418 LFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSV 477
              +    + +   V  +   +L  + TL       +           I  ++  + L  
Sbjct: 21  AIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTT----------IEGVQYLNNLIG 67

Query: 478 LDISDNQISGE------------------VPNWIWEVGSGNLKFLNLSHNLVVSLQEPYS 519
           L++ DNQI+                    + N     G  ++K L+L+   +  +     
Sbjct: 68  LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 520 ISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNS 579
           +S ++ L L  NQ+    P             N   S    + N    T        +N 
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD---DNK 184

Query: 580 LAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNL 625
           ++ + P  +    N   + L NN +S   P      ++S L ++ L
Sbjct: 185 ISDISP--LASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 30/212 (14%), Positives = 69/212 (32%), Gaps = 26/212 (12%)

Query: 271 SSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNH 330
             +  L    TG++    + +  L NL  +E+     T   P           +  +   
Sbjct: 41  DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK 98

Query: 331 FFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLL 390
               I  L   + L+       +++     +  + L      +   + L+G        +
Sbjct: 99  NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158

Query: 391 PNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSS 450
            N ++  L+     ++L  +               N++    P++    L NL  + L +
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKA-----------DDNKISDISPLA---SLPNLIEVHLKN 204

Query: 451 NKFSRLKLASSKPRAIPILKNQSQLSVLDISD 482
           N+ S           +  L N S L ++ +++
Sbjct: 205 NQISD----------VSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 42/255 (16%), Positives = 74/255 (29%), Gaps = 45/255 (17%)

Query: 146 NLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIR 205
            L    ++   + +++ + T      + L  +  LS  G  +                  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT-----QADLDGITTLSAFGTGV------------------ 53

Query: 206 LHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLP 265
                   +  E + +L NL  L+L +  +    P K L   T   L  +  + +     
Sbjct: 54  --------TTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAG 105

Query: 266 NFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMD 325
                            L+ T    +  L  L+ ++V   +       S           
Sbjct: 106 LQSIK---------TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL 156

Query: 326 FSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPR 385
              N     +  L     L  L    N +S          L NL  V L +N +S   P 
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSP- 212

Query: 386 SLFLLPNLEMLQLSN 400
            L    NL ++ L+N
Sbjct: 213 -LANTSNLFIVTLTN 226

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 5e-07
 Identities = 27/231 (11%), Positives = 60/231 (25%), Gaps = 21/231 (9%)

Query: 645 LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS 704
              L     +L+ +   + +    L+ +++  N + +     + +       +      +
Sbjct: 31  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 90

Query: 705 GHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQF 764
                P    + P LQ + ++            + ++          +N   IE  S   
Sbjct: 91  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 150

Query: 765 YEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGS 824
                                    +  + N  +          +        +N L   
Sbjct: 151 L------------------SFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEEL 192

Query: 825 IPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 875
               F        LD+S   +       L +L  L   +    NL  K+PT
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL-KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 33/237 (13%), Positives = 68/237 (28%), Gaps = 17/237 (7%)

Query: 445 TLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFL 504
                 +K + +      P  +P          L     ++           G G+L+ +
Sbjct: 12  VFLCQESKVTEI------PSDLP-----RNAIELRFVLTKLRVIQKGAFS--GFGDLEKI 58

Query: 505 NLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNF 564
            +S N V+ + E    S +  L     +   N+ Y++P       +          I + 
Sbjct: 59  EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 118

Query: 565 MSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLN 624
               +          +   I     +  +F  L   +  L           + +      
Sbjct: 119 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQL 178

Query: 625 LGRNNLN----GTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSN 677
              N  +      L + +F G  G  ILD+S  ++  +    L N   L+     + 
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 4e-06
 Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 249 LETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLP-DSIGNLENLTRVEVSSCNF 307
              L  + +  L  SL + P   +L +L + +      L    +  L  L  + +     
Sbjct: 10  SSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 308 TGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLL 367
               P +     +L  ++ S N          +  +L  L LS N L    +  + ++  
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128

Query: 368 NLQIVVLGHNSLSGSIPRSLFLLPNL 393
              +  +    L       L  +PN 
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLAHMPNA 154

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 38/306 (12%), Positives = 85/306 (27%), Gaps = 10/306 (3%)

Query: 584 IPESVCKATNFQVLDLSNNNLS--GTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPG 641
           +   + +  + + + LS N +             S   LE+     +   G + D I   
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF-SDIFTGRVKDEIPEA 81

Query: 642 DCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFP-CWLRNASSLQVLVLRS 700
              L    L   +L  V     A     Q   +            +L N         + 
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 701 NNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMP 760
                 ++  +   + P L+ +    N+      ++W  T          ++   GI   
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 761 SNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNA 820
             +   +      + +++  L+          +        P       +   L+    A
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 821 LTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLAS-----LNFLSVLNLSYNNLVGKIPT 875
                 S   N+  +++L L  N +       L +     +  L  L L+ N    +   
Sbjct: 262 AVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 320

Query: 876 STQLQS 881
             +++ 
Sbjct: 321 VDEIRE 326

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 43/339 (12%), Positives = 88/339 (25%), Gaps = 12/339 (3%)

Query: 150 LTELHLDRVDLSASG-TEWCKALSFLPNLQVLSLSGCDLSGP----INHYLAKSRSLSVI 204
           +    L    ++          L    +++ + LSG  +       ++  +A  + L + 
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 205 RLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSL 264
                +      E    L  L    L    L           PT +   +          
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 265 PNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHM 324
             +  N+ L     +    +          +N   +    C           ++ +    
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN---RLENGSMKEWAKT 181

Query: 325 DFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIP 384
             S           +  R      L    L+        +   N    +           
Sbjct: 182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 241

Query: 385 RSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGP----VPISIFFEL 440
                   L    LS       +   S + +  L  L L  N +E      +   I  ++
Sbjct: 242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 301

Query: 441 RNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLD 479
            +L  L+L+ N+FS       + R +   + + +L  LD
Sbjct: 302 PDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELD 340

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.7 bits (101), Expect = 7e-05
 Identities = 44/318 (13%), Positives = 87/318 (27%), Gaps = 32/318 (10%)

Query: 197 KSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGK----FPEKILHVPTLETL 252
           + +SL +  +       S    L    ++K + LS   +  +      E I     LE  
Sbjct: 6   EGKSLKLDAITTE-DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 253 DLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIP 312
           + S     +           L   +L    L                  +   +   P+ 
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 313 PSMANLTQLFHMDFSSNHFFG----PIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLN 368
               +   L     +                 +  L ++    N L  G    + +   +
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 369 LQIVVLGHNSLSGSIPR-----------SLFLLPNLEMLQLSNNQFENQLPEISNVSSSV 417
            +++       +G  P                L  L++   +     +    I+  S   
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 418 LFDLDLSGNRLEGPVPISI-----FFELRNLYTLDLSSNKFSRLKLASSKPRAIP--ILK 470
           L +L L+   L      ++       E   L TL L  N+           R +   I +
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE-----LDAVRTLKTVIDE 299

Query: 471 NQSQLSVLDISDNQISGE 488
               L  L+++ N+ S E
Sbjct: 300 KMPDLLFLELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 34/321 (10%), Positives = 81/321 (25%), Gaps = 42/321 (13%)

Query: 340 KSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG----SIPRSLFLLPNLEM 395
           + ++L    ++  +     +     +  +++ +VL  N++       +  ++    +LE+
Sbjct: 6   EGKSLKLDAITTEDEKSVFAV--LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 396 LQLSNNQFEN-----------------QLPEISNVSSSVLFDLDLSGNRLEGPVPISIFF 438
            + S+                      + P++  V  S       +   L   +      
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 439 ELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGS 498
           E   L+   L     +++  A  +       KN   L  +    N++         +   
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 499 GNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIP 558
            +     +         E      +  L         ++   +                 
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL---- 239

Query: 559 ADIGNFMSETEYFYFVAANNSLAGVIPESV------CKATNFQVLDLSNNNLSGTIPACL 612
                  S          +  L+     +V       +    Q L L  N +       L
Sbjct: 240 ------KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 293

Query: 613 ---ITKSSSTLEVLNLGRNNL 630
              I +    L  L L  N  
Sbjct: 294 KTVIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 43/311 (13%), Positives = 87/311 (27%), Gaps = 24/311 (7%)

Query: 392 NLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRL--EGPVPISIFFE-LRNLYTLDL 448
           +L++  ++    ++    +    S  + ++ LSGN +  E    +S      ++L   + 
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDS--VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 449 SSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSH 508
           S     R+K    +     +L+   +   L       +   P     +     K   L H
Sbjct: 67  SDIFTGRVKDEIPEALR-LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 509 NLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSET 568
             + +              L    +        P  S +   N        +        
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 569 EYFYFVAANNSLAGVIPESVCKATNFQ--------VLDLSNNNLSGTIPACLITKSSSTL 620
              + V    +                         L  +     G+    +  KS   L
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 621 EVLNLGRNNLNGTLSDTI-----FPGDCGLQILDLSGNQLQGVVPKSLA-----NCNMLQ 670
             L L    L+   +  +        + GLQ L L  N+++    ++L          L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 671 VLDLRSNYISD 681
            L+L  N  S+
Sbjct: 306 FLELNGNRFSE 316

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 39/305 (12%), Positives = 75/305 (24%), Gaps = 20/305 (6%)

Query: 224 NLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFP----KNSSLRDLILS 279
           +LK   ++    +      +L   +++ + LS N +   +             L     S
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 280 HTGLS----------GTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSN 329
                            L  ++     L  V +S   F       + +            
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 330 -HFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLF 388
            H  G  P           +L+ N  +              ++        + +      
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 389 LLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDL 448
           L     +      +    L          L  LDL  N        ++   L++   L  
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 449 SSNKFSRLKLASSKPRAIPILKNQ-SQLSVLDISDNQISGEVPNWIWEVGSGN---LKFL 504
                  L    +        K +   L  L +  N+I  +    +  V       L FL
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 505 NLSHN 509
            L+ N
Sbjct: 308 ELNGN 312

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.003
 Identities = 36/313 (11%), Positives = 78/313 (24%), Gaps = 28/313 (8%)

Query: 446 LDLSSNKFSRLKLASSKPRAIP-ILKNQSQLSVLDISDNQISGEVPNWIWEV--GSGNLK 502
             +         + +   +++  +L     +  + +S N I  E   W+ E      +L+
Sbjct: 3   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 503 FLNLSHNLVVSLQEPYSISGIRFLDLHSN------QLRGNIPYMSPNTSYVDYSNNNFTS 556
               S      +++    +    L               +  +       +    +  T 
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 557 IPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIP------- 609
           +     +            A       + +    A   + +    N L            
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 610 ---ACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANC 666
                L T       +   G  +L                  +   +     +  +L + 
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 667 NMLQVLDLRSNYISDNFPCWLRNA------SSLQVLVLRSNNFSGHIS---CPRNKVSWP 717
             L+ L L    +S      + +A        LQ L L+ N                  P
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 718 LLQIVDLACNKFS 730
            L  ++L  N+FS
Sbjct: 303 DLLFLELNGNRFS 315

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 29/197 (14%), Positives = 61/197 (30%), Gaps = 14/197 (7%)

Query: 645 LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS 704
               +L    +   V ++    N +  +   ++ I       ++   ++  L L  N  +
Sbjct: 26  TIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 81

Query: 705 GHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQF 764
                P   +       +D    K    L     L  +  E    S++N L         
Sbjct: 82  DI--KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139

Query: 765 YEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGS 824
           Y     +T   +  +L        ++    N     +P  +     L  L +S N ++  
Sbjct: 140 YLGNNKITDITVLSRL----TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD- 192

Query: 825 IPSSFGNLKEIESLDLS 841
              +   LK ++ L+L 
Sbjct: 193 -LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 29/213 (13%), Positives = 55/213 (25%), Gaps = 30/213 (14%)

Query: 286 TLPDSIG------NLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLH 339
           T+P  I             +  +   + T  +  +   L  +  +  +++     +  + 
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQGIQ 65

Query: 340 KSRNLNNLDLSFNNLSGG-----------ISSTFWEQLLNLQIVVLGHNSLSGSIPRSLF 388
              N+  L L+ N L+             +     +      +  L            + 
Sbjct: 66  YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 389 LLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDL 448
            +  L  L    + +            S L  LD           I     L  L  L L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 185

Query: 449 SSNKFSRLKLASSKPRAIPILKNQSQLSVLDIS 481
           S N  S           +  L     L VL++ 
Sbjct: 186 SKNHISD----------LRALAGLKNLDVLELF 208

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 33/153 (21%), Positives = 51/153 (33%), Gaps = 16/153 (10%)

Query: 397 QLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRL 456
           +L   Q E     +S         LDL G R                  L+  S+  + L
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRS-----DPDLVAQNIDVVLNRRSSMAATL 57

Query: 457 KLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQE 516
           ++            N  +L  L++S+N++            + NLK LNLS N + S +E
Sbjct: 58  RIIEE---------NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 108

Query: 517 --PYSISGIRFLDLHSNQLRGNIPYMSPNTSYV 547
                   +  L L  N L       S   S +
Sbjct: 109 LDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 3/113 (2%)

Query: 643 CGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNN 702
              + LDL G ++  V+    A  +    +D   N I             L+ L++ +N 
Sbjct: 18  VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNNR 74

Query: 703 FSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHL 755
                      +      I+        G L     L  +       + V + 
Sbjct: 75  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.003
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 827 SSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869
           + + N      LDL    +   I    A+L+    ++ S N +
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 19/149 (12%), Positives = 49/149 (32%), Gaps = 8/149 (5%)

Query: 457 KLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQE 516
           KL +          N  +   LD+   +I   + N            ++ S N +  L  
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLG--ATLDQFDAIDFSDNEIRKLDG 58

Query: 517 PYSISGIRFLDLHSNQLRGNIPYMS---PNTSYVDYSNNNFTSIPADIGNFMSETEYFYF 573
              +  ++ L +++N++      +    P+ + +  +NN+   +         ++  +  
Sbjct: 59  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118

Query: 574 VA--ANNSLAGVIPESVCKATNFQVLDLS 600
           +      +        + K    +VLD  
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 29/187 (15%), Positives = 54/187 (28%), Gaps = 28/187 (14%)

Query: 54  IGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEIS 113
           I   E    +   +  + + L   +    ++ + L  L    +L LS      E  + +S
Sbjct: 11  IRIFEERKSVVATE-AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKISSLS 67

Query: 114 SLTRLVTL-----------DLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSA 162
            +  L  L           +L  +        +    ++        +    L   +   
Sbjct: 68  GMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKI 127

Query: 163 SGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHL 222
           +       L+ L  L+ L L+G  L        A S     +              +  L
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV--------------VKRL 173

Query: 223 TNLKALD 229
            NLK LD
Sbjct: 174 PNLKKLD 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	967
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.98
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.37
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.36
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.17
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.13
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.84
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.73
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.68
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.15
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.1

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=4.1e-33  Score=301.72  Aligned_cols=258  Identities=30%  Similarity=0.480  Sum_probs=213.3

Q ss_pred             CCcEEEcccCcCCC--CCCcccccCCCCCccEEECCC-CcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCC
Q 046844          593 NFQVLDLSNNNLSG--TIPACLITKSSSTLEVLNLGR-NNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML  669 (967)
Q Consensus       593 ~L~~L~Ls~N~l~~--~~p~~~~~~~~~~L~~L~Ls~-N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  669 (967)
                      +++.|+|++|.++|  .+|..+..++  +|++|+|++ |+++|.+|.. |..+++|++|+|++|++.+..+..+..+..|
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~--~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLP--YLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCT--TCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCc--cccccccccccccccccccc-cccccccchhhhccccccccccccccchhhh
Confidence            46677777777766  4667776665  777777765 6777777776 7777788888888888887777778888888


Q ss_pred             CEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCC-cEEecCCccCcCcCcHHHHHHHhhcccCC
Q 046844          670 QVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLL-QIVDLACNKFSGRLSQKWLLTMMVAETKS  748 (967)
Q Consensus       670 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L-~~Ldls~N~l~g~~p~~~~~~~~~~~~~~  748 (967)
                      +.+++++|++.+.+|.++.+++.|+++++++|+++|.+  |..+..+..+ +.+++++|+++|..|..+.          
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~i--p~~~~~l~~l~~~l~~~~n~l~~~~~~~~~----------  195 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIPPTFA----------  195 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGCCCTTCCEEECCSSEEEEECCGGGG----------
T ss_pred             cccccccccccccCchhhccCcccceeecccccccccc--cccccccccccccccccccccccccccccc----------
Confidence            88888888888888888888888888888888888877  7777777665 7888888888877764321          


Q ss_pred             CcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCcc
Q 046844          749 GSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSS  828 (967)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~  828 (967)
                                                        .+ ....++++++.+.|.+|..++.++.++.+++++|.++|.+| .
T Consensus       196 ----------------------------------~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~  239 (313)
T d1ogqa_         196 ----------------------------------NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-K  239 (313)
T ss_dssp             ----------------------------------GC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-G
T ss_pred             ----------------------------------cc-ccccccccccccccccccccccccccccccccccccccccc-c
Confidence                                              11 23468999999999999999999999999999999999876 5


Q ss_pred             ccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCCCcCCccCCCccCCCCCCCCCCCCCCC
Q 046844          829 FGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNES  902 (967)
Q Consensus       829 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~~~~~c  902 (967)
                      ++.+++|+.|||++|+++|.+|..++++++|++|||++|+|+|.||....+..+....+.||+.+||.|++ .|
T Consensus       240 ~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            89999999999999999999999999999999999999999999998877888888889999999999875 56

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.98  E-value=5.5e-33  Score=300.72  Aligned_cols=276  Identities=29%  Similarity=0.395  Sum_probs=188.1

Q ss_pred             CCCCcCCCCCCCCCCCcc--cceeEeCCC---CcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCC-CCCCCCCCCcc
Q 046844           14 PSTKLSQWSSHQSSDCCD--WSGVRCDEA---GHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGF-TLFKGFQIPSR   87 (967)
Q Consensus        14 ~~~~l~~w~~~~~~~~c~--w~gv~C~~~---~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~lp~~   87 (967)
                      |+..+++|  ..++|||.  |+||+|+..   +||++|+|+++.+.|....++++++|++|++|+|++ |++.|. +|+.
T Consensus        20 ~~~~l~sW--~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~   96 (313)
T d1ogqa_          20 NPTTLSSW--LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPA   96 (313)
T ss_dssp             CCGGGTTC--CTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGG
T ss_pred             CCCcCCCC--CCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccc-cccc
Confidence            44579999  67889995  999999865   489999999999988544478899999999999986 778876 8999


Q ss_pred             ccCCCCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhH
Q 046844           88 LGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEW  167 (967)
Q Consensus        88 l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~  167 (967)
                      ++++++|++|+|++|++.+..|..+..+.+|+++++++|....        .                           .
T Consensus        97 i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~--------~---------------------------~  141 (313)
T d1ogqa_          97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG--------T---------------------------L  141 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES--------C---------------------------C
T ss_pred             cccccccchhhhccccccccccccccchhhhcccccccccccc--------c---------------------------C
Confidence            9999999999999999998888888888888888888752211        0                           1


Q ss_pred             HHHhcCCCCccEEEccCCCCCCCCcccccCCCCC-CEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCC
Q 046844          168 CKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSL-SVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHV  246 (967)
Q Consensus       168 ~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L-~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l  246 (967)
                      +..+..++.|+++++++|.+.+.+|..+..+..+ +.+++++|.+.+..+..+..+..+ .++++.+...+.+|..+..+
T Consensus       142 p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~  220 (313)
T d1ogqa_         142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSD  220 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTT
T ss_pred             chhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence            2334556666666666666666666666666664 667777777766666666655443 57777776666666666666


Q ss_pred             CCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEc
Q 046844          247 PTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDF  326 (967)
Q Consensus       247 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  326 (967)
                      ++++.+++++|.+ .+.++.+..+++|+.|++++|++++.+|..++++++|++|+|++|+++|.+|. +.++++|+.+++
T Consensus       221 ~~l~~l~~~~~~l-~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l  298 (313)
T d1ogqa_         221 KNTQKIHLAKNSL-AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAY  298 (313)
T ss_dssp             SCCSEEECCSSEE-CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGT
T ss_pred             ccccccccccccc-cccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHh
Confidence            6666666666653 22333444455555555555555555555555555555555555555544442 344455555555


Q ss_pred             cCcc
Q 046844          327 SSNH  330 (967)
Q Consensus       327 ~~n~  330 (967)
                      ++|+
T Consensus       299 ~~N~  302 (313)
T d1ogqa_         299 ANNK  302 (313)
T ss_dssp             CSSS
T ss_pred             CCCc
Confidence            5544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=9.7e-26  Score=251.32  Aligned_cols=213  Identities=27%  Similarity=0.318  Sum_probs=156.4

Q ss_pred             hhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCC
Q 046844          588 VCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN  667 (967)
Q Consensus       588 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  667 (967)
                      +.............|...  .........  +++.+++++|.+++..|   +...++|++|++++|+++..  ..+..++
T Consensus       171 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~--~~~~l~l~~n~i~~~~~---~~~~~~L~~L~l~~n~l~~~--~~l~~l~  241 (384)
T d2omza2         171 LANLTTLERLDISSNKVS--DISVLAKLT--NLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLT  241 (384)
T ss_dssp             GTTCTTCCEEECCSSCCC--CCGGGGGCT--TCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred             hccccccccccccccccc--ccccccccc--ccceeeccCCccCCCCc---ccccCCCCEEECCCCCCCCc--chhhccc
Confidence            333445555555555543  233333433  77788888887775443   34456788888888887753  3577788


Q ss_pred             CCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccC
Q 046844          668 MLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETK  747 (967)
Q Consensus       668 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~  747 (967)
                      +|+.|++++|++++..+  +..+++|++|++++|++++..    .+..++.++.++++.|++++...             
T Consensus       242 ~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~----~~~~~~~l~~l~~~~n~l~~~~~-------------  302 (384)
T d2omza2         242 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS----PLAGLTALTNLELNENQLEDISP-------------  302 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCSCCGG-------------
T ss_pred             ccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC----ccccccccccccccccccccccc-------------
Confidence            88888888888877554  677888888888888887643    36677788888888888764211             


Q ss_pred             CCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCc
Q 046844          748 SGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPS  827 (967)
Q Consensus       748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~  827 (967)
                                                       ...+..++.+++++|++++..|  +..+++|+.|+|++|++++ +| 
T Consensus       303 ---------------------------------~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-  345 (384)
T d2omza2         303 ---------------------------------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-  345 (384)
T ss_dssp             ---------------------------------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-
T ss_pred             ---------------------------------cchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-
Confidence                                             1135667889999999987643  8889999999999999985 44 


Q ss_pred             cccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCC
Q 046844          828 SFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN  867 (967)
Q Consensus       828 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N  867 (967)
                      .++++++|+.||+++|++++.+|  +.++++|++|++++|
T Consensus       346 ~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         346 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            69999999999999999998766  889999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=2.6e-25  Score=247.83  Aligned_cols=195  Identities=25%  Similarity=0.329  Sum_probs=161.3

Q ss_pred             ChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCccccc
Q 046844          585 PESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLA  664 (967)
Q Consensus       585 p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  664 (967)
                      ......+++++.+++++|.+++..|.  ....  +|+.|++++|.++ .++ . +..+++|+.|++++|++++..+  +.
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~~--~~~~--~L~~L~l~~n~l~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~--~~  260 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITPL--GILT--NLDELSLNGNQLK-DIG-T-LASLTNLTDLDLANNQISNLAP--LS  260 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGGG--GGCT--TCCEEECCSSCCC-CCG-G-GGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             ccccccccccceeeccCCccCCCCcc--cccC--CCCEEECCCCCCC-Ccc-h-hhcccccchhccccCccCCCCc--cc
Confidence            34566788999999999999865442  3333  8999999999998 454 2 7788999999999999987644  78


Q ss_pred             CCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhc
Q 046844          665 NCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVA  744 (967)
Q Consensus       665 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~  744 (967)
                      .+++|++|++++|++++..+  +..++.++.+.++.|++++.    ..+..+++++.|++++|++++..|.         
T Consensus       261 ~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~----~~~~~~~~l~~L~ls~n~l~~l~~l---------  325 (384)
T d2omza2         261 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI----SPISNLKNLTYLTLYFNNISDISPV---------  325 (384)
T ss_dssp             TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC----GGGGGCTTCSEEECCSSCCSCCGGG---------
T ss_pred             ccccCCEeeccCcccCCCCc--cccccccccccccccccccc----cccchhcccCeEECCCCCCCCCccc---------
Confidence            89999999999999987654  77899999999999999873    3577889999999999999864331         


Q ss_pred             ccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCccc
Q 046844          745 ETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGS  824 (967)
Q Consensus       745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~  824 (967)
                                                           ..++.|+.|++++|++++ +| +++.+++|++|+|++|++++.
T Consensus       326 -------------------------------------~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         326 -------------------------------------SSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             -------------------------------------GGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBC
T ss_pred             -------------------------------------ccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCC
Confidence                                                 146789999999999985 45 699999999999999999987


Q ss_pred             CCccccCCCCCCeEeCcCcc
Q 046844          825 IPSSFGNLKEIESLDLSMNN  844 (967)
Q Consensus       825 ip~~~~~l~~L~~LdLs~N~  844 (967)
                      +|  ++++++|+.|+|++|.
T Consensus       367 ~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         367 TP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             GG--GTTCTTCSEEECCCEE
T ss_pred             hh--hccCCCCCEeeCCCCc
Confidence            65  8999999999999984

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=6.8e-23  Score=219.86  Aligned_cols=270  Identities=21%  Similarity=0.235  Sum_probs=199.3

Q ss_pred             ceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEE
Q 046844          545 SYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLN  624 (967)
Q Consensus       545 ~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~  624 (967)
                      +.+|.++++++++|..+.   +.+++  |++++|+++...+.+|.++++|++|++++|.+....|..+..+.  .|++|+
T Consensus        13 ~~~~C~~~~L~~lP~~l~---~~l~~--L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~--~L~~L~   85 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDLP---PDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV--KLERLY   85 (305)
T ss_dssp             TEEECTTSCCCSCCCSCC---TTCCE--EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT--TCCEEE
T ss_pred             CEEEecCCCCCccCCCCC---CCCCE--EECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCC--ccCEec
Confidence            344555555555554332   22333  55556655555555677788888888888888866666676655  888888


Q ss_pred             CCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccc--cccchhhhcCCCCCEEEccCCc
Q 046844          625 LGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYIS--DNFPCWLRNASSLQVLVLRSNN  702 (967)
Q Consensus       625 Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~  702 (967)
                      +++|+++ .+|...   ...++.|++.+|.+.+..+..+.....++.++...|...  ...+..+..+++|+.+++++|.
T Consensus        86 l~~n~l~-~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~  161 (305)
T d1xkua_          86 LSKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  161 (305)
T ss_dssp             CCSSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ccCCccC-cCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence            8888888 677652   246888888888888877777888888888888888644  3445677888899999999988


Q ss_pred             cceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecc
Q 046844          703 FSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLK  782 (967)
Q Consensus       703 l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  782 (967)
                      ++..   |..  .+++|+.|++++|...+..+..+                                            .
T Consensus       162 l~~l---~~~--~~~~L~~L~l~~n~~~~~~~~~~--------------------------------------------~  192 (305)
T d1xkua_         162 ITTI---PQG--LPPSLTELHLDGNKITKVDAASL--------------------------------------------K  192 (305)
T ss_dssp             CCSC---CSS--CCTTCSEEECTTSCCCEECTGGG--------------------------------------------T
T ss_pred             cccc---Ccc--cCCccCEEECCCCcCCCCChhHh--------------------------------------------h
Confidence            8643   433  35788889999888876655322                                            1


Q ss_pred             cCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCcc------ccCC
Q 046844          783 VPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQ------LASL  856 (967)
Q Consensus       783 ~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~------l~~l  856 (967)
                      .++.++.|++++|++++..|..+..+++|++|+|++|+|+ .||..|+++++|++|+|++|+|+..-+..      +..+
T Consensus       193 ~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~  271 (305)
T d1xkua_         193 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK  271 (305)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTS
T ss_pred             ccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhccc
Confidence            3556788899999999888888999999999999999998 67888999999999999999998543323      3457


Q ss_pred             CCCCeEEccCCccc-cCCCC
Q 046844          857 NFLSVLNLSYNNLV-GKIPT  875 (967)
Q Consensus       857 ~~L~~l~ls~N~l~-g~ip~  875 (967)
                      ..|+.+++++|.++ +++|.
T Consensus       272 ~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         272 ASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             CCCSEEECCSSSSCGGGSCG
T ss_pred             CCCCEEECCCCcCccCcCCH
Confidence            78999999999884 56653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.7e-23  Score=220.29  Aligned_cols=227  Identities=21%  Similarity=0.209  Sum_probs=192.3

Q ss_pred             EEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECC
Q 046844          596 VLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLR  675 (967)
Q Consensus       596 ~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  675 (967)
                      .++.++++++ .+|..+.    +++++|+|++|+|+ .+|...|.++++|++|++++|++....+..+..++.++.++..
T Consensus        15 ~v~c~~~~L~-~iP~~ip----~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP----AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC----TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EEEcCCCCCC-ccCCCCC----CCCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccc
Confidence            4567777777 7777652    27889999999998 6776668999999999999999998888888888899988764


Q ss_pred             -CCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccccc
Q 046844          676 -SNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNH  754 (967)
Q Consensus       676 -~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~  754 (967)
                       .|.++...|.+|.++++|++|++++|.+.+..  +..+...++|+.+++++|++++..+..+                 
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~l~l~~N~l~~i~~~~f-----------------  149 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPDDTF-----------------  149 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTT-----------------
T ss_pred             cccccccccchhhcccccCCEEecCCccccccc--ccccchhcccchhhhccccccccChhHh-----------------
Confidence             66788878888999999999999999987765  6677788899999999999875443211                 


Q ss_pred             ccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCC
Q 046844          755 LGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKE  834 (967)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~  834 (967)
                                                 ...+.++.|++++|++++..|..|..++.|+.+++++|++++.+|..|+++++
T Consensus       150 ---------------------------~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~  202 (284)
T d1ozna_         150 ---------------------------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (284)
T ss_dssp             ---------------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             ---------------------------ccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhh
Confidence                                       23567889999999999888899999999999999999999999999999999


Q ss_pred             CCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCC
Q 046844          835 IESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP  874 (967)
Q Consensus       835 L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip  874 (967)
                      |++||+++|++++..|..++++++|+++++++|.+.+..+
T Consensus       203 L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            9999999999999999999999999999999999988655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-23  Score=222.97  Aligned_cols=154  Identities=24%  Similarity=0.215  Sum_probs=89.0

Q ss_pred             eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECC-CCcCcccCCCCCCCCCCcccEEeCC
Q 046844          573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLG-RNNLNGTLSDTIFPGDCGLQILDLS  651 (967)
Q Consensus       573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls-~N~l~~~ip~~~~~~l~~L~~L~L~  651 (967)
                      |++++|++++..+.++.++++|++|++++|++.+..+..+....  .++.++.. .|.++ .++...|.++++|++|+++
T Consensus        37 L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~--~~~~l~~~~~~~~~-~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA--LLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT--TCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECT
T ss_pred             EECcCCcCCCCCHHHhhccccccccccccccccccccccccccc--cccccccccccccc-cccchhhcccccCCEEecC
Confidence            45555555444444556666667777776666644444443333  55555544 33333 4444446666666666666


Q ss_pred             CCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcC
Q 046844          652 GNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSG  731 (967)
Q Consensus       652 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g  731 (967)
                      +|.+....+..+..+++|+.+++++|+++++.+.+|..+++|+.|++++|++++..  +..+..+++|+.+++++|++++
T Consensus       114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~--~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP--ERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCE
T ss_pred             CcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc--hhhhccccccchhhhhhccccc
Confidence            66666555556666666666666666666665666666666666666666666554  4455555555555555555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.5e-22  Score=215.44  Aligned_cols=283  Identities=16%  Similarity=0.228  Sum_probs=223.6

Q ss_pred             CccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEccc
Q 046844          522 GIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSN  601 (967)
Q Consensus       522 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~  601 (967)
                      ..+.+|.+++.++..++..++++++|++++|+++.+|+..+..+..++.  +++++|.+....|..+.++++|++|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~--L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT--LILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCE--EECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccc--cccccccccccchhhhhCCCccCEecccC
Confidence            3566777777777655555677888888888888888765555666766  89999999988888999999999999999


Q ss_pred             CcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccC--CCCcccccCCCCCCEEECCCCcc
Q 046844          602 NNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQ--GVVPKSLANCNMLQVLDLRSNYI  679 (967)
Q Consensus       602 N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l  679 (967)
                      |+++ .+|..+.    ..++.|++.+|.+. .++...|.....++.++...|...  ...+..|..+++|+.+++++|.+
T Consensus        89 n~l~-~l~~~~~----~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          89 NQLK-ELPEKMP----KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  162 (305)
T ss_dssp             SCCS-BCCSSCC----TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CccC-cCccchh----hhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence            9998 6776543    27999999999998 566555777888999999988654  45567789999999999999999


Q ss_pred             ccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccC
Q 046844          680 SDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEM  759 (967)
Q Consensus       680 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  759 (967)
                      +.. |..  .+++|+.|++++|..++..  +..+..++.++.|++++|.+.+..+..+                      
T Consensus       163 ~~l-~~~--~~~~L~~L~l~~n~~~~~~--~~~~~~~~~l~~L~~s~n~l~~~~~~~~----------------------  215 (305)
T d1xkua_         163 TTI-PQG--LPPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNGSL----------------------  215 (305)
T ss_dssp             CSC-CSS--CCTTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTTTG----------------------
T ss_pred             ccc-Ccc--cCCccCEEECCCCcCCCCC--hhHhhccccccccccccccccccccccc----------------------
Confidence            874 433  3689999999999999887  7889999999999999999976544211                      


Q ss_pred             CCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCcc------ccCCC
Q 046844          760 PSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSS------FGNLK  833 (967)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~------~~~l~  833 (967)
                                            ..++.|+.|+|++|+++ .+|..|..+++|++|+|++|+|+..-...      ...+.
T Consensus       216 ----------------------~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~  272 (305)
T d1xkua_         216 ----------------------ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA  272 (305)
T ss_dssp             ----------------------GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred             ----------------------cccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccC
Confidence                                  24678999999999998 57889999999999999999999543333      34678


Q ss_pred             CCCeEeCcCcccc-cc-CCccccCCCCCCeE
Q 046844          834 EIESLDLSMNNLS-GK-IPAQLASLNFLSVL  862 (967)
Q Consensus       834 ~L~~LdLs~N~l~-g~-ip~~l~~l~~L~~l  862 (967)
                      +|+.|+|++|.++ +. .|..|..+.....+
T Consensus       273 ~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~  303 (305)
T d1xkua_         273 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV  303 (305)
T ss_dssp             CCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred             CCCEEECCCCcCccCcCCHhHhcccccCccc
Confidence            8999999999985 33 44555554444433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.9e-22  Score=206.37  Aligned_cols=199  Identities=21%  Similarity=0.221  Sum_probs=143.9

Q ss_pred             CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEc
Q 046844          619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL  698 (967)
Q Consensus       619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  698 (967)
                      .+.+.+.++++++ .||.. ++  +++++|+|++|+|++..+..|.++++|++|+|++|+|+.+.  .++.+++|++|+|
T Consensus        11 ~~~~v~C~~~~L~-~iP~~-lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPD-LP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSC-CC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEEC
T ss_pred             CCeEEEccCCCCC-eeCcC-cC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccccc
Confidence            4455566666666 56655 32  35667777777776655566777777777777777776532  2456677777777


Q ss_pred             cCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEcccee
Q 046844          699 RSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEI  778 (967)
Q Consensus       699 ~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  778 (967)
                      ++|++++.   +..+..+++|+.|++++|++.+..+..                                          
T Consensus        85 s~N~l~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~------------------------------------------  119 (266)
T d1p9ag_          85 SHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGA------------------------------------------  119 (266)
T ss_dssp             CSSCCSSC---CCCTTTCTTCCEEECCSSCCCCCCSST------------------------------------------
T ss_pred             cccccccc---ccccccccccccccccccccceeeccc------------------------------------------
Confidence            77777654   556667777777777777765432211                                          


Q ss_pred             eecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCC
Q 046844          779 KLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNF  858 (967)
Q Consensus       779 ~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~  858 (967)
                        ...+..+..+++++|.+++..|..+..++.++.|++++|++++..|..|+.+++|++|||++|+|+ .+|..+..++.
T Consensus       120 --~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~  196 (266)
T d1p9ag_         120 --LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL  196 (266)
T ss_dssp             --TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCC
T ss_pred             --cccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCC
Confidence              113556778888888888777777888889999999999999888888899999999999999998 78888888899


Q ss_pred             CCeEEccCCcccc
Q 046844          859 LSVLNLSYNNLVG  871 (967)
Q Consensus       859 L~~l~ls~N~l~g  871 (967)
                      |+.|++++|.+..
T Consensus       197 L~~L~L~~Np~~C  209 (266)
T d1p9ag_         197 LPFAFLHGNPWLC  209 (266)
T ss_dssp             CSEEECCSCCBCC
T ss_pred             CCEEEecCCCCCC
Confidence            9999999998754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.3e-21  Score=198.51  Aligned_cols=211  Identities=21%  Similarity=0.212  Sum_probs=173.2

Q ss_pred             CccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEccc
Q 046844          522 GIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSN  601 (967)
Q Consensus       522 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~  601 (967)
                      ++.+++.+++.++..++..++++++|++++|+|+.+|...+..++.++.  |++++|+++.. | .++.+++|++|++++
T Consensus        11 ~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~--L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ--LNLDRAELTKL-Q-VDGTLPVLGTLDLSH   86 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCE--EECTTSCCCEE-E-CCSCCTTCCEEECCS
T ss_pred             CCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhccccccc--ccccccccccc-c-ccccccccccccccc
Confidence            4455667777766543344457777777777777777665555666666  88888888753 2 346789999999999


Q ss_pred             CcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCcccc
Q 046844          602 NNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISD  681 (967)
Q Consensus       602 N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  681 (967)
                      |+++ ..+..+....  +|+.|++++|.+. .++...+..+.++++|++++|.++...+..+..+++|+.+++++|++++
T Consensus        87 N~l~-~~~~~~~~l~--~L~~L~l~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          87 NQLQ-SLPLLGQTLP--ALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             SCCS-SCCCCTTTCT--TCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             cccc-cccccccccc--ccccccccccccc-eeeccccccccccccccccccccceeccccccccccchhcccccccccc
Confidence            9998 4566666655  9999999999998 5666658999999999999999998888899999999999999999999


Q ss_pred             ccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhh
Q 046844          682 NFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMV  743 (967)
Q Consensus       682 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~  743 (967)
                      ..+..|..+++|++|+|++|+|+. +  |..+..+++|+.|+|++|++.+.+...++..++.
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~~-l--p~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~  221 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLYT-I--PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ  221 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCC-C--CTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred             cCccccccccccceeecccCCCcc-c--ChhHCCCCCCCEEEecCCCCCCCcchHHHHHHHH
Confidence            999999999999999999999994 4  8889999999999999999999988777765543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=3.6e-17  Score=178.71  Aligned_cols=180  Identities=24%  Similarity=0.331  Sum_probs=88.1

Q ss_pred             CccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCc
Q 046844          474 QLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNN  553 (967)
Q Consensus       474 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~  553 (967)
                      +|+.|++++|+++ .++..     .+.|++|++++|.+..++....+++|+.++++++.+..... ....+..+.+.++.
T Consensus        79 ~L~~L~l~~n~l~-~l~~l-----p~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~l~~~~~~  151 (353)
T d1jl5a_          79 SLKSLLVDNNNLK-ALSDL-----PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD-LPPSLEFIAAGNNQ  151 (353)
T ss_dssp             TCCEEECCSSCCS-CCCSC-----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSC
T ss_pred             hhhhhhhhhcccc-hhhhh-----ccccccccccccccccccchhhhccceeecccccccccccc-ccccccchhhcccc
Confidence            4555555555554 22221     12466666666666666555556666777766666653322 22233333322222


Q ss_pred             CCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCccc
Q 046844          554 FTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGT  633 (967)
Q Consensus       554 l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~  633 (967)
                      ..                            .+..+..++.++.+++++|.+. .++...   .  ..+.+..+++.+. .
T Consensus       152 ~~----------------------------~~~~l~~l~~l~~L~l~~n~~~-~~~~~~---~--~~~~l~~~~~~~~-~  196 (353)
T d1jl5a_         152 LE----------------------------ELPELQNLPFLTAIYADNNSLK-KLPDLP---L--SLESIVAGNNILE-E  196 (353)
T ss_dssp             CS----------------------------SCCCCTTCTTCCEEECCSSCCS-SCCCCC---T--TCCEEECCSSCCS-S
T ss_pred             cc----------------------------ccccccccccceeccccccccc-cccccc---c--ccccccccccccc-c
Confidence            11                            1223445566777777777765 233221   1  3445555555554 4


Q ss_pred             CCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccce
Q 046844          634 LSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSG  705 (967)
Q Consensus       634 ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  705 (967)
                      ++.  +..++.|+.+++++|.... .|.   ...++..+++.+|++.....    ..+.+...++..|.+.+
T Consensus       197 ~~~--~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~  258 (353)
T d1jl5a_         197 LPE--LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSG  258 (353)
T ss_dssp             CCC--CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSE
T ss_pred             ccc--ccccccccccccccccccc-ccc---cccccccccccccccccccc----ccccccccccccccccc
Confidence            443  3455666666666666553 222   23445566666665544211    12344445554444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=5.4e-17  Score=177.26  Aligned_cols=304  Identities=23%  Similarity=0.308  Sum_probs=153.6

Q ss_pred             CCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCC
Q 046844          473 SQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNN  552 (967)
Q Consensus       473 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n  552 (967)
                      .++++||+++++++ .+|+..     ++|++|++++|+++.+|..  +.+|+.|++++|+++. ++..++.+++|++++|
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~~-----~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~-l~~lp~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPELP-----PHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKA-LSDLPPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSCC-----TTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSC-CCSCCTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCC-CCCCCC-----CCCCEEECCCCCCcccccc--hhhhhhhhhhhcccch-hhhhcccccccccccc
Confidence            36788888888887 566532     4578888888888777653  4577777777777763 3344456777777777


Q ss_pred             cCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcc
Q 046844          553 NFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNG  632 (967)
Q Consensus       553 ~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~  632 (967)
                      .++.+|.                            +..+++|+.|++++|.+.. .|...   .  .+..+.+.++....
T Consensus       109 ~l~~lp~----------------------------~~~l~~L~~L~l~~~~~~~-~~~~~---~--~l~~l~~~~~~~~~  154 (353)
T d1jl5a_         109 QLEKLPE----------------------------LQNSSFLKIIDVDNNSLKK-LPDLP---P--SLEFIAAGNNQLEE  154 (353)
T ss_dssp             CCSSCCC----------------------------CTTCTTCCEEECCSSCCSC-CCCCC---T--TCCEEECCSSCCSS
T ss_pred             ccccccc----------------------------hhhhccceeeccccccccc-ccccc---c--cccchhhccccccc
Confidence            7666653                            2234445555555555442 22111   1  34444444443321


Q ss_pred             cCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCC
Q 046844          633 TLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRN  712 (967)
Q Consensus       633 ~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~  712 (967)
                        ... +..+..++.|++++|.+.....    .....+.+..+++.+.. ++ .+..++.|+.+++++|.....   +. 
T Consensus       155 --~~~-l~~l~~l~~L~l~~n~~~~~~~----~~~~~~~l~~~~~~~~~-~~-~~~~l~~L~~l~l~~n~~~~~---~~-  221 (353)
T d1jl5a_         155 --LPE-LQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKTL---PD-  221 (353)
T ss_dssp             --CCC-CTTCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC---CS-
T ss_pred             --ccc-ccccccceeccccccccccccc----ccccccccccccccccc-cc-ccccccccccccccccccccc---cc-
Confidence              111 3444455555555554442211    11123344444433332 11 123444555555555444321   11 


Q ss_pred             CCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEEC
Q 046844          713 KVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDF  792 (967)
Q Consensus       713 ~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~L  792 (967)
                        ...++..+++.+|.+.......-             ........  ..             ...............++
T Consensus       222 --~~~~l~~~~~~~~~~~~~~~~~~-------------~l~~~~~~--~~-------------~~~~l~~l~~~~~~~~~  271 (353)
T d1jl5a_         222 --LPPSLEALNVRDNYLTDLPELPQ-------------SLTFLDVS--EN-------------IFSGLSELPPNLYYLNA  271 (353)
T ss_dssp             --CCTTCCEEECCSSCCSCCCCCCT-------------TCCEEECC--SS-------------CCSEESCCCTTCCEEEC
T ss_pred             --ccccccccccccccccccccccc-------------cccccccc--cc-------------cccccccccchhccccc
Confidence              12234444444444332111000             00000000  00             00000011223344556


Q ss_pred             CCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccC
Q 046844          793 SSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGK  872 (967)
Q Consensus       793 s~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~  872 (967)
                      +.|.+.+.    ...+++|++|+|++|+++ .+|..   +++|+.|+|++|+|+ .+|..   +++|+.|++++|+++ .
T Consensus       272 ~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~  338 (353)
T d1jl5a_         272 SSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-E  338 (353)
T ss_dssp             CSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-S
T ss_pred             ccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-C
Confidence            66655432    233567888888888887 57754   467778888888887 56653   456788888888886 4


Q ss_pred             CCC
Q 046844          873 IPT  875 (967)
Q Consensus       873 ip~  875 (967)
                      +|.
T Consensus       339 lp~  341 (353)
T d1jl5a_         339 FPD  341 (353)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=8.8e-19  Score=172.86  Aligned_cols=138  Identities=26%  Similarity=0.297  Sum_probs=126.6

Q ss_pred             CcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEE
Q 046844          594 FQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLD  673 (967)
Q Consensus       594 L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  673 (967)
                      .++++.++++++ .+|..+.    +++++|+|++|+|++.++...|.++++|++|+|++|++.+..+..|..+++|++|+
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp----~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCEEEEeCCCcC-ccCCCCC----CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceee
Confidence            457899999998 7888762    38999999999998778777799999999999999999999999999999999999


Q ss_pred             CCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHH
Q 046844          674 LRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWL  738 (967)
Q Consensus       674 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~  738 (967)
                      |++|+|+++.|.+|.++++|++|+|++|+|++..  +..+..+++|++++|++|++.+.++..++
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~--~~~f~~l~~L~~l~L~~N~~~~~~~~~~~  147 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCNCHLAWF  147 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccccC--HHHhcCCcccccccccccccccccchHHH
Confidence            9999999999999999999999999999999987  78899999999999999999998887665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=3.7e-17  Score=166.08  Aligned_cols=203  Identities=18%  Similarity=0.243  Sum_probs=138.1

Q ss_pred             EEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCC
Q 046844          597 LDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRS  676 (967)
Q Consensus       597 L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  676 (967)
                      ++++.+++++.++  ...+.  +|+.|++.+|+++ .++ . +..+++|++|++++|++++..|  +..+++|+.+++++
T Consensus        24 ~~l~~~~~~d~~~--~~~l~--~L~~L~l~~~~i~-~l~-~-l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          24 IAAGKSNVTDTVT--QADLD--GITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG   94 (227)
T ss_dssp             HHTTCSSTTSEEC--HHHHH--TCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred             HHhCCCCcCCcCC--HHHcC--CcCEEECCCCCCC-cch-h-HhcCCCCcEeecCCceeecccc--cccccccccccccc
Confidence            4455555554322  12222  5666666666665 443 2 5666677777777777765433  66777777777777


Q ss_pred             CccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccccccc
Q 046844          677 NYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLG  756 (967)
Q Consensus       677 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~  756 (967)
                      |.++..  ..+.++++|+.+.++++...+..    .+...+.++.++++++.+....+.                     
T Consensus        95 n~~~~i--~~l~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~---------------------  147 (227)
T d1h6ua2          95 NPLKNV--SAIAGLQSIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISPL---------------------  147 (227)
T ss_dssp             CCCSCC--GGGTTCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGGG---------------------
T ss_pred             cccccc--ccccccccccccccccccccccc----hhccccchhhhhchhhhhchhhhh---------------------
Confidence            777653  24667777777777777666532    345566777777777766543321                     


Q ss_pred             ccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCC
Q 046844          757 IEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIE  836 (967)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~  836 (967)
                                               ...+.++.+++++|.+++..+  ++++++|+.|||++|++++ +|. ++++++|+
T Consensus       148 -------------------------~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~  198 (227)
T d1h6ua2         148 -------------------------AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD-ISP-LASLPNLI  198 (227)
T ss_dssp             -------------------------GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCC
T ss_pred             -------------------------ccccccccccccccccccchh--hcccccceecccCCCccCC-Chh-hcCCCCCC
Confidence                                     134567888888888875433  8889999999999999986 443 88999999


Q ss_pred             eEeCcCccccccCCccccCCCCCCeEEccC
Q 046844          837 SLDLSMNNLSGKIPAQLASLNFLSVLNLSY  866 (967)
Q Consensus       837 ~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~  866 (967)
                      .|+|++|++++..|  +++++.|++|++++
T Consensus       199 ~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         199 EVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             EEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             EEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            99999999996543  88999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.2e-17  Score=171.94  Aligned_cols=227  Identities=15%  Similarity=0.094  Sum_probs=163.9

Q ss_pred             hhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCC-CcccccCC
Q 046844          588 VCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGV-VPKSLANC  666 (967)
Q Consensus       588 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l  666 (967)
                      .|.|. .+.++.++..++ .+|..+.    +++++|++++|+++ .+|..+|.++++|++|++++|.+... .+.+|.++
T Consensus         5 ~C~C~-~~~i~c~~~~l~-~iP~~l~----~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l   77 (242)
T d1xwdc1           5 ICHCS-NRVFLCQESKVT-EIPSDLP----RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL   77 (242)
T ss_dssp             SEEEC-SSEEEEESCSCS-SCCSCSC----SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESC
T ss_pred             cCCCc-CCEEEEeCCCCC-CcCCCCC----CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccc
Confidence            34443 367888888887 7887653    27899999999998 77776699999999999999988764 45578899


Q ss_pred             CCCCEEECC-CCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcc
Q 046844          667 NMLQVLDLR-SNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAE  745 (967)
Q Consensus       667 ~~L~~L~Ls-~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~  745 (967)
                      +.++.+++. .|.+....+..|.++++|+++++++|++.... .......+..+..+..+++++...-+..         
T Consensus        78 ~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~-~~~~~~~l~~l~~~~~~n~~l~~i~~~~---------  147 (242)
T d1xwdc1          78 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNS---------  147 (242)
T ss_dssp             TTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCC-CCTTTCBSSCEEEEEESCTTCCEECTTS---------
T ss_pred             cccccccccccccccccccccccccccccccccchhhhcccc-cccccccccccccccccccccccccccc---------
Confidence            999999875 47888888888999999999999999887542 1223445566666666666653211100         


Q ss_pred             cCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCc-EEECCCCCCccc
Q 046844          746 TKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLY-ALNMSHNALTGS  824 (967)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~-~L~Ls~N~l~g~  824 (967)
                                                        +......+..+++++|+++...+..+ ....+. .+++++|+++..
T Consensus       148 ----------------------------------~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l  192 (242)
T d1xwdc1         148 ----------------------------------FVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEEL  192 (242)
T ss_dssp             ----------------------------------STTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCC
T ss_pred             ----------------------------------cccccccceeeecccccccccccccc-cchhhhccccccccccccc
Confidence                                              01123357788999999985544444 445544 446788889854


Q ss_pred             CCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccC
Q 046844          825 IPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSY  866 (967)
Q Consensus       825 ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~  866 (967)
                      .+..|.++++|+.|||++|+|+...+..|.+++.|+++++.+
T Consensus       193 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            455689999999999999999966566788888777766643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6e-19  Score=200.59  Aligned_cols=62  Identities=26%  Similarity=0.367  Sum_probs=43.8

Q ss_pred             cccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCC----CcChhccCCCCCCEEeCcCCcCc
Q 046844          343 NLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG----SIPRSLFLLPNLEMLQLSNNQFE  404 (967)
Q Consensus       343 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~  404 (967)
                      +|++|+++++++++..-...+..++++++|+|++|.++.    .+...+..+++|++|+|++|+++
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCC
Confidence            567777777777754333446677888888888887763    23445667888888888888775

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=9.3e-17  Score=160.50  Aligned_cols=180  Identities=23%  Similarity=0.311  Sum_probs=104.7

Q ss_pred             EcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCC
Q 046844          598 DLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSN  677 (967)
Q Consensus       598 ~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  677 (967)
                      +++.+.+++.++..  ...  +|+.|++++|.++ .++.  +..+++|++|++++|++++..  .++.+++|++|++++|
T Consensus        30 ~l~~~~~~~~~~~~--~L~--~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n  100 (210)
T d1h6ta2          30 NLKKKSVTDAVTQN--ELN--SIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDEN  100 (210)
T ss_dssp             HTTCSCTTSEECHH--HHH--TCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSS
T ss_pred             HhCcCccCCccCHH--Hhc--CccEEECcCCCCC-Cchh--HhhCCCCCEEeCCCccccCcc--ccccCccccccccccc
Confidence            45555555444321  122  5666666666665 2321  445555666666666655432  2445555666666666


Q ss_pred             ccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccc
Q 046844          678 YISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGI  757 (967)
Q Consensus       678 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~  757 (967)
                      ++++. | .+.++++|+.|++++|.+...    ..+..                                          
T Consensus       101 ~i~~l-~-~l~~l~~L~~L~l~~~~~~~~----~~l~~------------------------------------------  132 (210)
T d1h6ta2         101 KVKDL-S-SLKDLKKLKSLSLEHNGISDI----NGLVH------------------------------------------  132 (210)
T ss_dssp             CCCCG-G-GGTTCTTCCEEECTTSCCCCC----GGGGG------------------------------------------
T ss_pred             ccccc-c-ccccccccccccccccccccc----ccccc------------------------------------------
Confidence            55542 2 245555555555555544321    12222                                          


Q ss_pred             cCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCe
Q 046844          758 EMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIES  837 (967)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~  837 (967)
                                                ++.++.+++++|.+++.  ..++.+++|+.+++++|++++ ++. ++++++|+.
T Consensus       133 --------------------------l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~  182 (210)
T d1h6ta2         133 --------------------------LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQN  182 (210)
T ss_dssp             --------------------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred             --------------------------ccccccccccccccccc--ccccccccccccccccccccc-ccc-ccCCCCCCE
Confidence                                      34455666666666542  346677788888888888875 332 778888888


Q ss_pred             EeCcCccccccCCccccCCCCCCeEEccC
Q 046844          838 LDLSMNNLSGKIPAQLASLNFLSVLNLSY  866 (967)
Q Consensus       838 LdLs~N~l~g~ip~~l~~l~~L~~l~ls~  866 (967)
                      |||++|+++. +| .++++++|++|++++
T Consensus       183 L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         183 LYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             EECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            8888888874 44 578888888888763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.6e-16  Score=159.65  Aligned_cols=203  Identities=21%  Similarity=0.286  Sum_probs=161.2

Q ss_pred             eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCC
Q 046844          573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG  652 (967)
Q Consensus       573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~  652 (967)
                      ++++.+++++.+  .+..+.+|+.|++++|.++ .++ .+..+.  +|++|++++|.+++..|   |..+++|+++++++
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l~~l~--~L~~L~ls~n~i~~~~~---l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLN--NLIGLELKDNQITDLAP---LKNLTKITELELSG   94 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCT--TCCEEECCSSCCCCCGG---GTTCCSCCEEECCS
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hHhcCC--CCcEeecCCceeecccc---cccccccccccccc
Confidence            455666666654  3456788999999999998 454 466665  99999999999985433   78889999999999


Q ss_pred             CccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCc
Q 046844          653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGR  732 (967)
Q Consensus       653 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~  732 (967)
                      |.++..  ..+..+++|+.++++++...+..+  +...+.++.+.++++.+....    .+...++|+.|++++|.++..
T Consensus        95 n~~~~i--~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~  166 (227)
T d1h6ua2          95 NPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS----PLAGLTNLQYLSIGNAQVSDL  166 (227)
T ss_dssp             CCCSCC--GGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCCC
T ss_pred             cccccc--ccccccccccccccccccccccch--hccccchhhhhchhhhhchhh----hhccccccccccccccccccc
Confidence            998843  358889999999999999887543  667889999999999887543    466788999999999988643


Q ss_pred             CcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCc
Q 046844          733 LSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLY  812 (967)
Q Consensus       733 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~  812 (967)
                      .+                                              ...++.|+.|||++|++++ +|. ++.+++|+
T Consensus       167 ~~----------------------------------------------l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~  198 (227)
T d1h6ua2         167 TP----------------------------------------------LANLSKLTTLKADDNKISD-ISP-LASLPNLI  198 (227)
T ss_dssp             GG----------------------------------------------GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCC
T ss_pred             hh----------------------------------------------hcccccceecccCCCccCC-Chh-hcCCCCCC
Confidence            22                                              1246779999999999986 443 89999999


Q ss_pred             EEECCCCCCcccCCccccCCCCCCeEeCcC
Q 046844          813 ALNMSHNALTGSIPSSFGNLKEIESLDLSM  842 (967)
Q Consensus       813 ~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~  842 (967)
                      .|+|++|++++ +|. ++++++|+.||+++
T Consensus       199 ~L~Ls~N~lt~-i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         199 EVHLKNNQISD-VSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             EEECTTSCCCB-CGG-GTTCTTCCEEEEEE
T ss_pred             EEECcCCcCCC-Ccc-cccCCCCCEEEeeC
Confidence            99999999996 443 89999999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.6e-16  Score=163.34  Aligned_cols=202  Identities=14%  Similarity=0.052  Sum_probs=136.1

Q ss_pred             CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCC-CCccCCCCcccccCCCCCCE
Q 046844          593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLS-GNQLQGVVPKSLANCNMLQV  671 (967)
Q Consensus       593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~-~N~l~~~~p~~~~~l~~L~~  671 (967)
                      ++++|++++|+++...+..|..+.  +|++|++++|.+.+.++...|.+++.++++++. .|++....+..|.++++|+.
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~--~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFG--DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCT--TCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCEEECcCCcCCccChhHhhccc--hhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            567777777777632233444444  777777777777666666667777778877764 46677777777888888888


Q ss_pred             EECCCCccccccc-hhhhcCCCCCEEEccCCccceecCCCCCCCCCC-CCcEEecCCccCcCcCcHHHHHHHhhcccCCC
Q 046844          672 LDLRSNYISDNFP-CWLRNASSLQVLVLRSNNFSGHISCPRNKVSWP-LLQIVDLACNKFSGRLSQKWLLTMMVAETKSG  749 (967)
Q Consensus       672 L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~-~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~  749 (967)
                      +++++|+++...+ ..+..++.+..+...++++....  +..+..++ .++.+++++|+++...+ ..+           
T Consensus       108 l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~--~~~~~~~~~~l~~L~l~~n~l~~i~~-~~~-----------  173 (242)
T d1xwdc1         108 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE--RNSFVGLSFESVILWLNKNGIQEIHN-CAF-----------  173 (242)
T ss_dssp             EEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC--TTSSTTSBSSCEEEECCSSCCCEECT-TTT-----------
T ss_pred             cccchhhhccccccccccccccccccccccccccccc--ccccccccccceeeeccccccccccc-ccc-----------
Confidence            8888888765433 23344566666666777776654  45555553 67888888888763222 110           


Q ss_pred             cccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccc
Q 046844          750 SEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSF  829 (967)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~  829 (967)
                                                      ......+.+++++|+++...+..|.++++|++|||++|+++...+..|
T Consensus       174 --------------------------------~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~  221 (242)
T d1xwdc1         174 --------------------------------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL  221 (242)
T ss_dssp             --------------------------------TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSC
T ss_pred             --------------------------------cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHH
Confidence                                            011223445678888885555678999999999999999996555668


Q ss_pred             cCCCCCCeEeCcC
Q 046844          830 GNLKEIESLDLSM  842 (967)
Q Consensus       830 ~~l~~L~~LdLs~  842 (967)
                      .++++|+.|++.+
T Consensus       222 ~~l~~L~~l~~~~  234 (242)
T d1xwdc1         222 ENLKKLRARSTYN  234 (242)
T ss_dssp             TTCCEEESSSEES
T ss_pred             cCCcccccCcCCC
Confidence            8888888877654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=8.5e-17  Score=158.36  Aligned_cols=174  Identities=27%  Similarity=0.375  Sum_probs=129.6

Q ss_pred             eeeccCCcCCCCCcchhccccccceeeeeecCCcccccC-ChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEE
Q 046844          546 YVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVI-PESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLN  624 (967)
Q Consensus       546 ~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~-p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~  624 (967)
                      .+++++++++.+|..+.   ..++.  |++++|++++.+ +..|..+++|+.|++++|++.+..+..+....  +|++|+
T Consensus        12 ~v~Cs~~~L~~iP~~lp---~~l~~--L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~--~L~~L~   84 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIP---LHTTE--LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS--HIQELQ   84 (192)
T ss_dssp             EEECTTSCCSSCCSCCC---TTCSE--EECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT--TCCEEE
T ss_pred             EEEEeCCCcCccCCCCC---CCCCE--EEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc--ccceee
Confidence            45555555555555432   23333  666666666533 45667889999999999999977777777665  899999


Q ss_pred             CCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccc-hhhhcCCCCCEEEccCCcc
Q 046844          625 LGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFP-CWLRNASSLQVLVLRSNNF  703 (967)
Q Consensus       625 Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l  703 (967)
                      |++|+++ .+|..+|.++++|++|+|++|+|+++.|.+|..+++|++|+|++|.+....+ .++.  ..++.+.+..|.+
T Consensus        85 Ls~N~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~  161 (192)
T d1w8aa_          85 LGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAA  161 (192)
T ss_dssp             CCSCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGC
T ss_pred             ecccccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCe
Confidence            9999999 5666669999999999999999999889999999999999999999876433 2332  2355566777777


Q ss_pred             ceecCCCCCCCCCCCCcEEecCCccCcCcCc
Q 046844          704 SGHISCPRNKVSWPLLQIVDLACNKFSGRLS  734 (967)
Q Consensus       704 ~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p  734 (967)
                      +...  |.   .+..++.+|++.|.|.+..+
T Consensus       162 ~c~~--p~---~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         162 RCGA--PS---KVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             BBCS--ST---TTTTSBGGGSCTTTCCCCCC
T ss_pred             EeCC--Ch---hhcCCEeeecCHhhCcCCCC
Confidence            7544  54   45567888999999987655

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=3.2e-16  Score=156.54  Aligned_cols=181  Identities=19%  Similarity=0.250  Sum_probs=139.5

Q ss_pred             eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCC
Q 046844          573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG  652 (967)
Q Consensus       573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~  652 (967)
                      ..+..+.+++.++.  ..+.+|+.|++++|.+++ ++. +..+.  +|++|++++|++++ ++.  +..+++|++|++++
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~-l~~-l~~l~--~L~~L~L~~n~i~~-l~~--~~~l~~L~~L~l~~   99 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKS-VQG-IQYLP--NVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDE   99 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCC-CTT-GGGCT--TCCEEECCSSCCCC-CGG--GTTCTTCCEEECCS
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCCC-chh-HhhCC--CCCEEeCCCccccC-ccc--cccCcccccccccc
Confidence            45666777776654  356789999999999984 443 55555  99999999999985 553  67899999999999


Q ss_pred             CccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCc
Q 046844          653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGR  732 (967)
Q Consensus       653 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~  732 (967)
                      |++++. | .+.++++|+.|++++|.+...  ..+..+++|+.+++++|.+++.    .....++               
T Consensus       100 n~i~~l-~-~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~----~~~~~l~---------------  156 (210)
T d1h6ta2         100 NKVKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLT---------------  156 (210)
T ss_dssp             SCCCCG-G-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC----GGGGGCT---------------
T ss_pred             cccccc-c-ccccccccccccccccccccc--cccccccccccccccccccccc----ccccccc---------------
Confidence            999864 3 588999999999999998763  4588999999999999988753    2233333               


Q ss_pred             CcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCc
Q 046844          733 LSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLY  812 (967)
Q Consensus       733 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~  812 (967)
                                                                           .|+.+++++|++++ +++ ++++++|+
T Consensus       157 -----------------------------------------------------~L~~l~l~~n~l~~-i~~-l~~l~~L~  181 (210)
T d1h6ta2         157 -----------------------------------------------------KLDTLSLEDNQISD-IVP-LAGLTKLQ  181 (210)
T ss_dssp             -----------------------------------------------------TCSEEECCSSCCCC-CGG-GTTCTTCC
T ss_pred             -----------------------------------------------------cccccccccccccc-ccc-ccCCCCCC
Confidence                                                                 45555666666654 332 77888999


Q ss_pred             EEECCCCCCcccCCccccCCCCCCeEeCcC
Q 046844          813 ALNMSHNALTGSIPSSFGNLKEIESLDLSM  842 (967)
Q Consensus       813 ~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~  842 (967)
                      .|+|++|+++. +| .+.++++|+.|||++
T Consensus       182 ~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         182 NLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             EEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            99999999884 66 588899999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=6.2e-16  Score=153.03  Aligned_cols=178  Identities=27%  Similarity=0.329  Sum_probs=101.4

Q ss_pred             EEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECC
Q 046844          596 VLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLR  675 (967)
Q Consensus       596 ~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  675 (967)
                      ...++.+.+++.++.  ....  +++.|++++|.++ .++.  +..+++|++|++++|++++..|  +.++++|+.|+++
T Consensus        22 ~~~l~~~~~~~~~~~--~~l~--~l~~L~l~~~~i~-~l~~--l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~   92 (199)
T d2omxa2          22 KTVLGKTNVTDTVSQ--TDLD--QVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN   92 (199)
T ss_dssp             HHHTTCSSTTSEECH--HHHT--TCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             HHHhCCCCCCCccCH--HHhc--CCCEEECCCCCCC-Cccc--cccCCCcCcCccccccccCccc--ccCCccccccccc
Confidence            345566666543332  1222  6666777766665 3432  4455566666666666654332  5556666666666


Q ss_pred             CCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccc
Q 046844          676 SNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHL  755 (967)
Q Consensus       676 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~  755 (967)
                      +|.+....  .+.+++.|+.|++++|.+...    ..+..                                        
T Consensus        93 ~n~~~~~~--~l~~l~~L~~L~l~~~~~~~~----~~~~~----------------------------------------  126 (199)
T d2omxa2          93 NNQIADIT--PLANLTNLTGLTLFNNQITDI----DPLKN----------------------------------------  126 (199)
T ss_dssp             SSCCCCCG--GGTTCTTCSEEECCSSCCCCC----GGGTT----------------------------------------
T ss_pred             cccccccc--ccccccccccccccccccccc----cccch----------------------------------------
Confidence            66555432  245555555555555554432    12233                                        


Q ss_pred             cccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCC
Q 046844          756 GIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEI  835 (967)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L  835 (967)
                                                  ++.++.+++++|++.. +| .+..++.|+.|++++|++++. + .++++++|
T Consensus       127 ----------------------------l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L  174 (199)
T d2omxa2         127 ----------------------------LTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL-K-PLANLTTL  174 (199)
T ss_dssp             ----------------------------CTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTC
T ss_pred             ----------------------------hhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCC-c-cccCCCCC
Confidence                                        3445555566665542 23 366777777777777777753 3 37777788


Q ss_pred             CeEeCcCccccccCCccccCCCCCCeE
Q 046844          836 ESLDLSMNNLSGKIPAQLASLNFLSVL  862 (967)
Q Consensus       836 ~~LdLs~N~l~g~ip~~l~~l~~L~~l  862 (967)
                      +.||+++|++++ +| .++++++|+.|
T Consensus       175 ~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         175 ERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             CEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            888888887775 33 46677777664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.5e-18  Score=194.13  Aligned_cols=49  Identities=22%  Similarity=0.207  Sum_probs=28.1

Q ss_pred             ccCCCCCEEECCCCcccccccCCCCCccCCC-C-CCCCCccEEECcCCccCCCCCc
Q 046844          438 FELRNLYTLDLSSNKFSRLKLASSKPRAIPI-L-KNQSQLSVLDISDNQISGEVPN  491 (967)
Q Consensus       438 ~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~-l-~~~~~L~~L~Ls~n~i~~~~~~  491 (967)
                      ..+++|++|++++|+++.-...     .+.. + .+...|+.|++.++.+......
T Consensus       394 ~~~~~L~~L~Ls~N~i~~~g~~-----~l~~~l~~~~~~L~~l~l~~~~~~~~~~~  444 (460)
T d1z7xw1         394 LANHSLRELDLSNNCLGDAGIL-----QLVESVRQPGCLLEQLVLYDIYWSEEMED  444 (460)
T ss_dssp             HHCCCCCEEECCSSSCCHHHHH-----HHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred             hcCCCCCEEECCCCcCCHHHHH-----HHHHHHHhCCCccCEEECCCCCCCHHHHH
Confidence            5567777777777777531110     1111 2 2334688888888877644333

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=2.8e-15  Score=148.20  Aligned_cols=177  Identities=23%  Similarity=0.285  Sum_probs=134.5

Q ss_pred             eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCC
Q 046844          573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG  652 (967)
Q Consensus       573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~  652 (967)
                      ..++.+.+++.++.  ..+.+++.|++++|.++ .++ .+..+.  +|++|++++|++++ ++.  +.++++|++|++++
T Consensus        23 ~~l~~~~~~~~~~~--~~l~~l~~L~l~~~~i~-~l~-~l~~l~--nL~~L~Ls~N~l~~-~~~--l~~l~~L~~L~l~~   93 (199)
T d2omxa2          23 TVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIK-SID-GVEYLN--NLTQINFSNNQLTD-ITP--LKNLTKLVDILMNN   93 (199)
T ss_dssp             HHTTCSSTTSEECH--HHHTTCCEEECTTSCCC-CCT-TGGGCT--TCCEEECCSSCCCC-CGG--GTTCTTCCEEECCS
T ss_pred             HHhCCCCCCCccCH--HHhcCCCEEECCCCCCC-Ccc-ccccCC--CcCcCccccccccC-ccc--ccCCcccccccccc
Confidence            45677777776543  46789999999999998 454 355555  99999999999985 443  88999999999999


Q ss_pred             CccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCc
Q 046844          653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGR  732 (967)
Q Consensus       653 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~  732 (967)
                      |.+... + .+.+++.|+.|++++|.+....  .+..+++|+.|++++|++...    ..+..+++|+.|++        
T Consensus        94 n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~----~~l~~~~~L~~L~l--------  157 (199)
T d2omxa2          94 NQIADI-T-PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDI----SALSGLTSLQQLNF--------  157 (199)
T ss_dssp             SCCCCC-G-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC----GGGTTCTTCSEEEC--------
T ss_pred             cccccc-c-cccccccccccccccccccccc--ccchhhhhHHhhhhhhhhccc----cccccccccccccc--------
Confidence            999854 3 4889999999999999998754  478899999999999988642    23444555555554        


Q ss_pred             CcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCc
Q 046844          733 LSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLY  812 (967)
Q Consensus       733 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~  812 (967)
                                                                                  ++|++++. + .++++++|+
T Consensus       158 ------------------------------------------------------------~~n~l~~l-~-~l~~l~~L~  175 (199)
T d2omxa2         158 ------------------------------------------------------------SSNQVTDL-K-PLANLTTLE  175 (199)
T ss_dssp             ------------------------------------------------------------CSSCCCCC-G-GGTTCTTCC
T ss_pred             ------------------------------------------------------------ccccccCC-c-cccCCCCCC
Confidence                                                                        44544432 2 267788888


Q ss_pred             EEECCCCCCcccCCccccCCCCCCeE
Q 046844          813 ALNMSHNALTGSIPSSFGNLKEIESL  838 (967)
Q Consensus       813 ~L~Ls~N~l~g~ip~~~~~l~~L~~L  838 (967)
                      .|++++|++++ +| .++++++|++|
T Consensus       176 ~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         176 RLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             EEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             EEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            88888888875 44 47788888775

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5.3e-16  Score=162.80  Aligned_cols=219  Identities=21%  Similarity=0.237  Sum_probs=99.4

Q ss_pred             CCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHh
Q 046844           65 DLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFL  144 (967)
Q Consensus        65 ~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l  144 (967)
                      ....|++|||+++.+.+..++..+.++++|++|++++|.+.+..+..++++++|++|++++|..++      ...+....
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~it------d~~l~~l~  117 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS------EFALQTLL  117 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC------HHHHHHHH
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccc------ccccchhh
Confidence            344556666655554433233445555666666666665555555555555666666665554333      11222233


Q ss_pred             cCCCCCCEEEcCCcc-CCCcchhHHHHh-cCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCc-chhhhcC
Q 046844          145 QNLTELTELHLDRVD-LSASGTEWCKAL-SFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSS-GTEFLAH  221 (967)
Q Consensus       145 ~~l~~L~~L~l~~~~-l~~~~~~~~~~l-~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~  221 (967)
                      .++++|++|+++++. +++.  .....+ ...++|+.|+++++..                      .+... +.....+
T Consensus       118 ~~~~~L~~L~ls~c~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~----------------------~i~~~~l~~l~~~  173 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFTEK--HVQVAVAHVSETITQLNLSGYRK----------------------NLQKSDLSTLVRR  173 (284)
T ss_dssp             HHCTTCCEEECCCCTTCCHH--HHHHHHHHSCTTCCEEECCSCGG----------------------GSCHHHHHHHHHH
T ss_pred             HHHHhccccccccccccccc--cchhhhcccccccchhhhccccc----------------------ccccccccccccc
Confidence            445555555555542 2211  111111 1234455555544310                      11111 1112234


Q ss_pred             CCCCCEEeccCCC-CCCccchhccCCCCCCEEeccCCC-CCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCE
Q 046844          222 LTNLKALDLSECG-LQGKFPEKILHVPTLETLDLSINQ-LLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTR  299 (967)
Q Consensus       222 l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  299 (967)
                      +++|++|++++|. +++.....+.++++|++|++++|. ++...+..+..+++|++|+++++--.+.++.....+++|+ 
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~-  252 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ-  252 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE-
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc-
Confidence            5555555555542 444444455555555555555542 3323333344455666666655522222222223455544 


Q ss_pred             EEccCCCCCCCCCcccc
Q 046844          300 VEVSSCNFTGPIPPSMA  316 (967)
Q Consensus       300 L~Ls~n~l~~~~~~~l~  316 (967)
                        +..+.++...++.++
T Consensus       253 --i~~~~ls~~~~~~~~  267 (284)
T d2astb2         253 --INCSHFTTIARPTIG  267 (284)
T ss_dssp             --ESCCCSCCTTCSSCS
T ss_pred             --ccCccCCCCCCCccC
Confidence              455556554444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=9e-15  Score=153.26  Aligned_cols=208  Identities=17%  Similarity=0.174  Sum_probs=104.9

Q ss_pred             CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCC-ccccc-cchhhhcCCCCCEE
Q 046844          619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSN-YISDN-FPCWLRNASSLQVL  696 (967)
Q Consensus       619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L  696 (967)
                      .|++||++++.+++.....++..+++|++|+|+++.+++..+..+..+++|+.|+++++ .+++. +.....++++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            56666666666553322223555666666666666666555566666666677776663 44432 12223456666666


Q ss_pred             EccCC-ccceecCCCCCCC-CCCCCcEEecCCcc--CcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEE
Q 046844          697 VLRSN-NFSGHISCPRNKV-SWPLLQIVDLACNK--FSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVT  772 (967)
Q Consensus       697 ~L~~N-~l~~~~~~p~~~~-~l~~L~~Ldls~N~--l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  772 (967)
                      +++++ .+++.. ....+. ..+.|+.|++++..  ++.    ..+..                                
T Consensus       127 ~ls~c~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~i~~----~~l~~--------------------------------  169 (284)
T d2astb2         127 NLSWCFDFTEKH-VQVAVAHVSETITQLNLSGYRKNLQK----SDLST--------------------------------  169 (284)
T ss_dssp             ECCCCTTCCHHH-HHHHHHHSCTTCCEEECCSCGGGSCH----HHHHH--------------------------------
T ss_pred             cccccccccccc-chhhhcccccccchhhhccccccccc----ccccc--------------------------------
Confidence            66664 232110 011111 12456666665432  111    00000                                


Q ss_pred             EccceeeecccCCcceEEECCCC-cccCCCcccccCCCCCcEEECCC-CCCcccCCccccCCCCCCeEeCcCccccccCC
Q 046844          773 VKGIEIKLLKVPNIFTSIDFSSN-NFEGPIPVEMGRFRSLYALNMSH-NALTGSIPSSFGNLKEIESLDLSMNNLSGKIP  850 (967)
Q Consensus       773 ~~~~~~~~~~~~~~l~~l~Ls~N-~l~g~ip~~~~~l~~L~~L~Ls~-N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip  850 (967)
                             ....++.|+.||+++| .+++..+..++++++|++|+|++ +.+++..+..++++++|+.|+++++--.+.++
T Consensus       170 -------l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~  242 (284)
T d2astb2         170 -------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ  242 (284)
T ss_dssp             -------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHH
T ss_pred             -------cccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHH
Confidence                   0012445666666654 35555556666666666666666 45665555566666666666666652222222


Q ss_pred             ccccCCCCCCeEEccCCccccCC
Q 046844          851 AQLASLNFLSVLNLSYNNLVGKI  873 (967)
Q Consensus       851 ~~l~~l~~L~~l~ls~N~l~g~i  873 (967)
                      .....++.|+   +..+++++..
T Consensus       243 ~l~~~lp~L~---i~~~~ls~~~  262 (284)
T d2astb2         243 LLKEALPHLQ---INCSHFTTIA  262 (284)
T ss_dssp             HHHHHSTTSE---ESCCCSCCTT
T ss_pred             HHHHhCcccc---ccCccCCCCC
Confidence            2223344433   3455555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.7e-14  Score=132.31  Aligned_cols=128  Identities=19%  Similarity=0.168  Sum_probs=107.2

Q ss_pred             hhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCC
Q 046844          588 VCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN  667 (967)
Q Consensus       588 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  667 (967)
                      +.++.++++|+|++|+|+ .+|..+....  +|+.|+|++|+++ .++.  |..+++|++|++++|+++...+..+..++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~--~L~~L~Ls~N~i~-~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLD--QFDAIDFSDNEIR-KLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTT--CCSEEECCSSCCC-EECC--CCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccc--cCCEEECCCCCCC-ccCC--cccCcchhhhhcccccccCCCcccccccc
Confidence            456778999999999998 6676555555  8999999999998 6653  88999999999999999987777788899


Q ss_pred             CCCEEECCCCccccccc-hhhhcCCCCCEEEccCCccceecCCCC----CCCCCCCCcEEec
Q 046844          668 MLQVLDLRSNYISDNFP-CWLRNASSLQVLVLRSNNFSGHISCPR----NKVSWPLLQIVDL  724 (967)
Q Consensus       668 ~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~p~----~~~~l~~L~~Ldl  724 (967)
                      +|+.|++++|+|+.... ..+..+++|++|++++|+++..   |.    .+..+++|++||-
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~---~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK---KHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS---TTHHHHHHHHCTTCSEETT
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCccccc---cchHHHHHHHCCCcCeeCC
Confidence            99999999999987533 5788999999999999999764   33    3667899999883

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=2.8e-13  Score=121.45  Aligned_cols=102  Identities=27%  Similarity=0.299  Sum_probs=49.2

Q ss_pred             EEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECC
Q 046844          596 VLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLR  675 (967)
Q Consensus       596 ~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  675 (967)
                      +|++++|+++ .++. +..+.  .|++|++++|+++ .+|.. |..+++|++|++++|+|++. | .+..+++|++|+++
T Consensus         2 ~L~Ls~n~l~-~l~~-l~~l~--~L~~L~ls~N~l~-~lp~~-~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~   73 (124)
T d1dcea3           2 VLHLAHKDLT-VLCH-LEQLL--LVTHLDLSHNRLR-ALPPA-LAALRCLEVLQASDNALENV-D-GVANLPRLQELLLC   73 (124)
T ss_dssp             EEECTTSCCS-SCCC-GGGGT--TCCEEECCSSCCC-CCCGG-GGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECC
T ss_pred             EEEcCCCCCC-CCcc-cccCC--CCCEEECCCCccC-cchhh-hhhhhccccccccccccccc-C-ccccccccCeEECC
Confidence            4455555554 3332 33333  4555555555554 44443 44455555555555555532 2 24555555555555


Q ss_pred             CCcccccc-chhhhcCCCCCEEEccCCccce
Q 046844          676 SNYISDNF-PCWLRNASSLQVLVLRSNNFSG  705 (967)
Q Consensus       676 ~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~  705 (967)
                      +|+|++.. ...+..+++|++|++++|++++
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            55555432 1344555555555555555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.38  E-value=6.3e-14  Score=151.74  Aligned_cols=113  Identities=16%  Similarity=0.205  Sum_probs=52.5

Q ss_pred             CCCCCCEEeccCCCCCCc-----cchhccCCCCCCEEeccCCCCCCCCC----CCCCCCCCCCEEEccCCCCCCCccc--
Q 046844          221 HLTNLKALDLSECGLQGK-----FPEKILHVPTLETLDLSINQLLQGSL----PNFPKNSSLRDLILSHTGLSGTLPD--  289 (967)
Q Consensus       221 ~l~~L~~L~Ls~n~l~~~-----~~~~l~~l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~--  289 (967)
                      ..+.|++|++++|.+...     +...+..+++|++|++++|.+.....    ..+..+++|++|++++|.+++....  
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            344455555555544321     12223444555555555554322111    1123345555555555555433222  


Q ss_pred             --ccc--CCCCCCEEEccCCCCCCC----CCcccc-CCCCCcEEEccCccccc
Q 046844          290 --SIG--NLENLTRVEVSSCNFTGP----IPPSMA-NLTQLFHMDFSSNHFFG  333 (967)
Q Consensus       290 --~l~--~l~~L~~L~Ls~n~l~~~----~~~~l~-~l~~L~~L~L~~n~l~~  333 (967)
                        .+.  ..+.|++|++++|+++..    +...+. ++++|++|++++|.+..
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence              222  234566777777665421    122221 45667777777776643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=2e-12  Score=115.70  Aligned_cols=116  Identities=26%  Similarity=0.293  Sum_probs=92.5

Q ss_pred             eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCC
Q 046844          573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG  652 (967)
Q Consensus       573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~  652 (967)
                      |++++|+++.. + .+..+++|++|++++|+++ .+|..+..+.  +|++|++++|.++ .+|.  |..+++|++|++++
T Consensus         3 L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~--~L~~L~l~~N~i~-~l~~--~~~l~~L~~L~l~~   74 (124)
T d1dcea3           3 LHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALR--CLEVLQASDNALE-NVDG--VANLPRLQELLLCN   74 (124)
T ss_dssp             EECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCT--TCCEEECCSSCCC-CCGG--GTTCSSCCEEECCS
T ss_pred             EEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhh--ccccccccccccc-ccCc--cccccccCeEECCC
Confidence            56666666533 2 3677899999999999998 7888787766  9999999999998 5663  88999999999999


Q ss_pred             CccCCCC-cccccCCCCCCEEECCCCcccccc---chhhhcCCCCCEE
Q 046844          653 NQLQGVV-PKSLANCNMLQVLDLRSNYISDNF---PCWLRNASSLQVL  696 (967)
Q Consensus       653 N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L  696 (967)
                      |+|+... ...+..+++|++|++++|++++..   ......+++|+.|
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9998654 367899999999999999997542   3344557777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.36  E-value=1.8e-13  Score=147.99  Aligned_cols=101  Identities=19%  Similarity=0.105  Sum_probs=52.0

Q ss_pred             cCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcc-------hhHHHHhcCCCCccE
Q 046844          107 EIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASG-------TEWCKALSFLPNLQV  179 (967)
Q Consensus       107 ~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~-------~~~~~~l~~l~~L~~  179 (967)
                      .+...+.+...|+.|+|++|. +..   .....+...+...++|+.|+++++......       ..+...+..+++|++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~-i~~---~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~   97 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNT-IGT---EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT   97 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSE-ECH---HHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred             HHHHHHhhCCCCCEEECcCCc-CCH---HHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccc
Confidence            344556667777777777652 210   222334444566667777776655433221       123344455666666


Q ss_pred             EEccCCCCCCCC----cccccCCCCCCEEEccCCCC
Q 046844          180 LSLSGCDLSGPI----NHYLAKSRSLSVIRLHYNYG  211 (967)
Q Consensus       180 L~Ls~~~l~~~~----~~~l~~l~~L~~L~L~~n~~  211 (967)
                      |+|++|.+....    ...+...++|++|++++|.+
T Consensus        98 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          98 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             ccccccccccccccchhhhhcccccchheecccccc
Confidence            666666555432    12233445555555555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.1e-13  Score=125.58  Aligned_cols=105  Identities=18%  Similarity=0.201  Sum_probs=80.5

Q ss_pred             hhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCc-ccccCC
Q 046844          588 VCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP-KSLANC  666 (967)
Q Consensus       588 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l  666 (967)
                      +..+++|+.|++++|+++ .++ .+..+.  +|++|++++|+++ .+|..++..+++|++|++++|+++.... ..+..+
T Consensus        37 ~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~--~L~~L~ls~N~i~-~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l  111 (162)
T d1a9na_          37 GATLDQFDAIDFSDNEIR-KLD-GFPLLR--RLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASL  111 (162)
T ss_dssp             GGGTTCCSEEECCSSCCC-EEC-CCCCCS--SCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGC
T ss_pred             ccccccCCEEECCCCCCC-ccC-CcccCc--chhhhhccccccc-CCCccccccccccccceeccccccccccccccccc
Confidence            345678888888888887 444 344444  8889999999988 5666656778899999999999885422 468889


Q ss_pred             CCCCEEECCCCcccccc---chhhhcCCCCCEEE
Q 046844          667 NMLQVLDLRSNYISDNF---PCWLRNASSLQVLV  697 (967)
Q Consensus       667 ~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~  697 (967)
                      ++|+.|++++|+++...   +..+..+++|++||
T Consensus       112 ~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         112 KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            99999999999987643   23578899999887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.4e-11  Score=115.25  Aligned_cols=120  Identities=19%  Similarity=0.133  Sum_probs=97.3

Q ss_pred             CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCC-ccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEE
Q 046844          619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGN-QLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLV  697 (967)
Q Consensus       619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  697 (967)
                      ..+.++.+++.+. .+|.. +..+++|++|++++| .++.+.+.+|.++++|+.|++++|+|+.+.|.+|..+++|++|+
T Consensus         9 ~~~~l~c~~~~~~-~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCeEEecCCCCc-cCccc-ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            4556777777777 66766 778888999999766 48877778899999999999999999998888999999999999


Q ss_pred             ccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhh
Q 046844          698 LRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMV  743 (967)
Q Consensus       698 L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~  743 (967)
                      |++|+|+..   |........|+.|+|++|++.+.+-..|+..+..
T Consensus        87 Ls~N~l~~l---~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~~  129 (156)
T d2ifga3          87 LSFNALESL---SWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEE  129 (156)
T ss_dssp             CCSSCCSCC---CSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHH
T ss_pred             ccCCCCccc---ChhhhccccccccccCCCcccCCchHHHHHHHHH
Confidence            999999865   5554455579999999999998887777755543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.17  E-value=4e-13  Score=131.69  Aligned_cols=130  Identities=25%  Similarity=0.268  Sum_probs=104.0

Q ss_pred             CChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccc
Q 046844          584 IPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSL  663 (967)
Q Consensus       584 ~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~  663 (967)
                      ++..+..+++|++|++++|+++ .++ .+..+.  +|+.|+|++|.++ .+|.. +..+++|++|++++|+++..  ..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~--~L~~L~Ls~N~i~-~i~~~-~~~~~~L~~L~l~~N~i~~l--~~~  111 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGME--NLRILSLGRNLIK-KIENL-DAVADTLEELWISYNQIASL--SGI  111 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHT--TCCEEECCEEEEC-SCSSH-HHHHHHCCEEECSEEECCCH--HHH
T ss_pred             hhhHHhcccccceeECcccCCC-Ccc-cccCCc--cccChhhcccccc-ccccc-cccccccccccccccccccc--ccc
Confidence            4456788999999999999998 565 466665  8999999999997 67653 44556899999999999864  357


Q ss_pred             cCCCCCCEEECCCCccccccc-hhhhcCCCCCEEEccCCccceecCCCCC----------CCCCCCCcEEe
Q 046844          664 ANCNMLQVLDLRSNYISDNFP-CWLRNASSLQVLVLRSNNFSGHISCPRN----------KVSWPLLQIVD  723 (967)
Q Consensus       664 ~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~p~~----------~~~l~~L~~Ld  723 (967)
                      ..+++|++|++++|+|+.... ..+..+++|+.|++++|++....  +..          +..+|+|+.||
T Consensus       112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~--~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY--KENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHH--CTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccccchhccccccccccCCCccceeecCCCccccCc--ccccchhhHHHHHHHHCCCcCEeC
Confidence            889999999999999987543 57889999999999999987654  322          45688888887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.5e-11  Score=111.71  Aligned_cols=111  Identities=22%  Similarity=0.150  Sum_probs=92.5

Q ss_pred             hcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCc-CcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCC
Q 046844          589 CKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNN-LNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN  667 (967)
Q Consensus       589 ~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~-l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  667 (967)
                      +.+...+.++.+++.+. .+|..+....  +|++|++++|+ ++ .++...|.++++|+.|+|++|+|+.+.|.+|..++
T Consensus         5 C~c~~~~~l~c~~~~~~-~~p~~l~~l~--~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~   80 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGAL-DSLHHLPGAE--NLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (156)
T ss_dssp             SCCSSSSCEECCSSCCC-TTTTTSCSCS--CCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             CCcCCCCeEEecCCCCc-cCcccccCcc--ccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccc
Confidence            34556677888888887 5677666555  89999998765 76 77776699999999999999999988899999999


Q ss_pred             CCCEEECCCCccccccchhhhcCCCCCEEEccCCccc
Q 046844          668 MLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS  704 (967)
Q Consensus       668 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  704 (967)
                      +|++|+|++|+|+...+..|..+ +|+.|+|++|++.
T Consensus        81 ~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          81 RLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             cccceeccCCCCcccChhhhccc-cccccccCCCccc
Confidence            99999999999998777777655 7999999999885

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.13  E-value=7.3e-13  Score=129.76  Aligned_cols=75  Identities=23%  Similarity=0.269  Sum_probs=44.9

Q ss_pred             ceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCC-ccccCCCCCCeEeCcCccccccCCcc----------ccC
Q 046844          787 FTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIP-SSFGNLKEIESLDLSMNNLSGKIPAQ----------LAS  855 (967)
Q Consensus       787 l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip-~~~~~l~~L~~LdLs~N~l~g~ip~~----------l~~  855 (967)
                      |+.|++++|+++. ++ .+..+++|+.|+|++|+++.... ..++.+++|+.|+|++|.+....+..          +..
T Consensus        95 L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~  172 (198)
T d1m9la_          95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             CCEEECSEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHH
T ss_pred             ccccccccccccc-cc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHH
Confidence            4455555555553 22 35566667777777777764211 34667777777777777766544432          456


Q ss_pred             CCCCCeEE
Q 046844          856 LNFLSVLN  863 (967)
Q Consensus       856 l~~L~~l~  863 (967)
                      +++|+.||
T Consensus       173 lp~L~~LD  180 (198)
T d1m9la_         173 LPNLKKLD  180 (198)
T ss_dssp             CSSCCEES
T ss_pred             CCCcCEeC
Confidence            77777776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.8e-08  Score=92.98  Aligned_cols=85  Identities=21%  Similarity=0.169  Sum_probs=53.1

Q ss_pred             CCCCCcccEEeCCCCccCCCC--cccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCC-----C
Q 046844          639 FPGDCGLQILDLSGNQLQGVV--PKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCP-----R  711 (967)
Q Consensus       639 ~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p-----~  711 (967)
                      +..+++|++|+|++|+|+...  +..+..+++|+.||+++|+|+...+-.+.....|+.|++++|++.+.....     .
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            344567777777777777542  344666777777777777777755544445556777777777776532100     1


Q ss_pred             CCCCCCCCcEEe
Q 046844          712 NKVSWPLLQIVD  723 (967)
Q Consensus       712 ~~~~l~~L~~Ld  723 (967)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            144567777766

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.4e-06  Score=81.04  Aligned_cols=81  Identities=25%  Similarity=0.163  Sum_probs=44.6

Q ss_pred             CCCCccEEEccCCCCCCCC--cccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccc-------hhc
Q 046844          173 FLPNLQVLSLSGCDLSGPI--NHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFP-------EKI  243 (967)
Q Consensus       173 ~l~~L~~L~Ls~~~l~~~~--~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-------~~l  243 (967)
                      .+++|++|+|++|+++...  +..+..+++|+.|++++|.+....+-.+....+|+.|++++|.+.....       ..+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            3455555555555555432  2334556666666666666655444333344457777777777664433       224


Q ss_pred             cCCCCCCEEe
Q 046844          244 LHVPTLETLD  253 (967)
Q Consensus       244 ~~l~~L~~L~  253 (967)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            5677777775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.73  E-value=2.6e-05  Score=72.57  Aligned_cols=48  Identities=8%  Similarity=0.034  Sum_probs=23.8

Q ss_pred             HHHHhcCCCCCCEEEcCCccCCCcch-hHHHHhcCCCCccEEEccCCCC
Q 046844          140 LSLFLQNLTELTELHLDRVDLSASGT-EWCKALSFLPNLQVLSLSGCDL  187 (967)
Q Consensus       140 l~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~l~~L~~L~Ls~~~l  187 (967)
                      +...+...+.|++|++++|.+...+. .++.++...+.|++|++++|.+
T Consensus        64 la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          64 LIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             HhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            33344445555555555555554332 2344455555555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.68  E-value=3.2e-05  Score=71.86  Aligned_cols=47  Identities=19%  Similarity=0.215  Sum_probs=21.8

Q ss_pred             HhcCCCCCCEEEcCCccCCCcc-hhHHHHhcCCCCccEEEccCCCCCC
Q 046844          143 FLQNLTELTELHLDRVDLSASG-TEWCKALSFLPNLQVLSLSGCDLSG  189 (967)
Q Consensus       143 ~l~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~l~~L~~L~Ls~~~l~~  189 (967)
                      .+...+.|++|++++|.+.+.+ ..+...+...+.|++|++++|.++.
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            3444455555555555444322 1223334444555555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.15  E-value=0.00022  Score=65.95  Aligned_cols=14  Identities=14%  Similarity=0.119  Sum_probs=5.7

Q ss_pred             CCCccEEEccCCCC
Q 046844          174 LPNLQVLSLSGCDL  187 (967)
Q Consensus       174 l~~L~~L~Ls~~~l  187 (967)
                      .+.++.+++++|.+
T Consensus        73 ~~~l~~l~l~~~~~   86 (166)
T d1io0a_          73 NNTLKSLNVESNFI   86 (166)
T ss_dssp             CSSCCEEECCSSCC
T ss_pred             cccchhhhhccccc
Confidence            34444444444433

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.10  E-value=0.00022  Score=65.96  Aligned_cols=117  Identities=19%  Similarity=0.265  Sum_probs=74.9

Q ss_pred             HHHhcCCCCCCEEEcCCc-cCCCcc-hhHHHHhcCCCCccEEEccCCCCCCC----CcccccCCCCCCEEEccCCCCCCc
Q 046844          141 SLFLQNLTELTELHLDRV-DLSASG-TEWCKALSFLPNLQVLSLSGCDLSGP----INHYLAKSRSLSVIRLHYNYGLSS  214 (967)
Q Consensus       141 ~~~l~~l~~L~~L~l~~~-~l~~~~-~~~~~~l~~l~~L~~L~Ls~~~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~  214 (967)
                      .....+.++|++|+++++ .++..+ ..++.++...++|++|++++|.++..    +...+...++++.+++++|.+...
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            334456677777777763 454433 23566777888899999998887654    224456678888888888877654


Q ss_pred             ch----hhhcCCCCCCEEecc--CCCCCC----ccchhccCCCCCCEEeccCC
Q 046844          215 GT----EFLAHLTNLKALDLS--ECGLQG----KFPEKILHVPTLETLDLSIN  257 (967)
Q Consensus       215 ~~----~~l~~l~~L~~L~Ls--~n~l~~----~~~~~l~~l~~L~~L~L~~n  257 (967)
                      ..    ..+...+.|+.++|+  +|.+..    .+...+...++|++|+++.+
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            33    345567778776554  445543    23344556677777776654