Citrus Sinensis ID: 046848

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950------
Protein Sequence
MSSKWFLVLQYLALFSVILFDQLEPRAADSSNIIRCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNELCGLPLPNKCPDEDSAPGPGKDDANTSEDEDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHRYYNFLTGVKNWFYVTAVVNIAKLQRRFRN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccccEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHHHcccccccEEEccccccccccccccccccccccccEEEccccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccHHHHHHHcccccccccccEEEcccccccEEcccccccccccEEEcccccccccccccccccccccEEEccccccEEEccHHHccccccccEEEccccEEEEEEcccccccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEccccccccccccccccccccccEEEccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHcccccEEEcccccccccccHHHHHccccccEEEccccEEEEcccccccccccccEEEcccccccccccHHHHHHcccccccccccEEEcccccccccccccccccEEEEEEEEEccccEEEcccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcEEEEEEEHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccccccccHHHHccHHccEEEccccccccccccHHHcccccccEEEccccccccccccccccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHHccccccEEEEcccccccccccccccccccccccEEEEcccccccccccHHHHcccccccEEEEcccccccccccHHHccccccEEEEccccccccccHHHHcccccEEEEcccccccccccHHHHccccccccccccEEEccccccccccccccccccccEEEcccccccccccHHHHcHHcccEEEcccccccccccHHHHHHcccccEEEEccccEEEEccccccccccEEEEEEccccccccccHHHHccccccEEEcccccccccccHHHHHHHHHccEEEcccccccccccHHHHHHHHHccEEEcccccccccccccccccEEEEcccccccccccHHHcccccccEEEEEccccccccccHHHccccccEEEEcccccccccccccccccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHHHHccccEEEEEccccccccccHHHHccccccEEEcccccccccccHHHHcHHHHHHcccccccccccccccccccccccHHHHHHHHEEEEccccHHHHccccEEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSSKWFLVLQYLALFSVILFdqlepraadssniIRCIDEEREALLAFKQGlvdesgilsswgredekrdccgwrgvncsnrtghvYKLDLHilqvfpspclkgtisssLLILQHLTyldlsgnnfsgssipEFIGSLSKLsylglsntefagpiplqlgnlsrlqvldigfnslisgenLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLIscdlpptipssdlylnsstSLEVIVILGNnltdsiypwlFNVSSNLVELINLGsnqlqgsipeafghmpslntLFLASNQfreipkslgnmcnlksltlSYNTLRGDLSEIIQNLSDGCTKTSLAWLFldsneitgslpnfggfsslkRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLAdnsltlefshdwippfqlsqvnlgsckigprfpkwlrnQNQILsldisnsgisdtvpnwfwnqtynlSFFNlsnnqikgklpnlssrfhpyrpgidissnqfegpipqlplnasflnlsknkfsgSISFLCSITGHKLDYIDLsnnllsgrlpdcwsqfDSLAILNLAnnsffgkipdsigFLKNLQSLSLynnrltgelpsfftngsqltlmdlgknglsgeiptwiGEGLVNLVVLSLksnkfngsiplqLCHLANvqildlssnnisgiipkcfnnftamthekgsnLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDlssnklggevpEEIMDLAGLIALNlsrntltgqitpkigqlksldfldlsrnqffgsipsslsqlSRLSVMDLsynnlsgkipsgtqlqsfstsmyagnelcglplpnkcpdedsapgpgkddantsededqFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHRYYNFLTGVKNWFYVTAVVNIAKLQRRFRN
Flexible Loop (DISEMBL)
MSSKWFLVLQYLALFSVILFDQLEPRAADSSNIIRCIDEEREALLAFKQGLVdesgilsswgredekrdccGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNELCGLPLPNKCPDEDSAPGPGKDDANTSEDEDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHRYYNFLTGVKNWFYVTAVVNIAKLQRRFRN
Low Complexity Region (SEG)
MSSKWFLVLQYLALFSVILFDQLEPRAADSSNIIRCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIgslsklsylglsNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGlvnlvvlslksnkFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNELCGLPLPNKCPDEDSAPGPGKDDANTSEDEDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHRYYNFLTGVKNWFYVTAVVNIAKLQRRFRN
Disordered region (IsUnstruct)
***KWFLVLQYLALFSVILFDQLEPRAADSSNIIRCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSL**LSRLSVMDLSYN*******************YAGNELCG****************************QFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHRYYNFLTGVKNWFYVTAVVNIAKL******
Disordered Region (DISOPRED)
***KWFLVLQYLALFSVILFDQLEPRAADSSNIIRCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHE*****TLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNELCGLPLP**************************ITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHRYYNFLTGVKNWFYVTAVVNIAKLQRRFR*
Disordered Region (DISEMBL)
MSSKWFLVLQYLALFSVILFDQLEPRAADSSNIIRCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNELCGLPLPNKCPDE**************EDEDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHRYYNFLTGVKNWFYVTAVVNIAKLQRRFRN
Disordered Region (DISPRO)
*SSKWFLVLQYLALFSVILFDQLEPRAADSSNIIRCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNELCGLPLPNKC*********************QFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHRYYNFLTGVKNWFYVTAVVNIAKLQRRF**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSKWFLVLQYLALFSVILFDQLEPRAADSSNIIRCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNELCGLPLPNKCPDEDSAPGPGKDDANTSEDEDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHRYYNFLTGVKNWFYVTAVVNIAKLQRRFRN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	956	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.819	0.626	0.306	9e-72
Q9FL28	1173	LRR receptor-like serine/	no	no	0.788	0.642	0.317	2e-71
Q9C9H7	847	Receptor-like protein 12	no	no	0.839	0.948	0.289	9e-69
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.806	0.615	0.310	6e-67
Q9LP24	1120	Probable leucine-rich rep	no	no	0.735	0.627	0.303	1e-59
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.691	0.581	0.310	2e-59
C0LGV1	1135	LRR receptor-like serine/	no	no	0.614	0.517	0.325	2e-53
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.608	0.528	0.317	2e-53
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.610	0.536	0.312	2e-52
O49318	1124	Probable leucine-rich rep	no	no	0.690	0.587	0.304	2e-51

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  272 bits (696), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 272/888 (30%), Positives = 416/888 (46%), Gaps = 105/888 (11%)

Query: 37  IDEEREALLAFKQGLV---DESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHIL 93
           I+ + + LL  K+ LV    E   L  W  ++   + C W GV C N TG    + L++ 
Sbjct: 23  INNDLQTLLEVKKSLVTNPQEDDPLRQWNSDN--INYCSWTGVTCDN-TGLFRVIALNLT 79

Query: 94  QVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGP 153
            +     L G+IS       +L +LDLS NN  G  IP  + +L+ L  L L + +  G 
Sbjct: 80  GL----GLTGSISPWFGRFDNLIHLDLSSNNLVG-PIPTALSNLTSLESLFLFSNQLTGE 134

Query: 154 IPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLD 213
           IP QLG+L  ++ L IG N L+ G+  E L +L +L  L L+   L+        L +L 
Sbjct: 135 IPSQLGSLVNIRSLRIGDNELV-GDIPETLGNLVNLQMLALASCRLT--GPIPSQLGRLV 191

Query: 214 SLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINL 273
            +++L L    L   IP+    L + + L V     N L  +I   L  + +  +E++NL
Sbjct: 192 RVQSLILQDNYLEGPIPAE---LGNCSDLTVFTAAENMLNGTIPAELGRLEN--LEILNL 246

Query: 274 GSNQLQGSIPEAFGHMPSLNTLFLASNQFRE-IPKSLGNMCNLKSLTLSYNTLRGDLSEI 332
            +N L G IP   G M  L  L L +NQ +  IPKSL ++ NL++L LS N L G++ E 
Sbjct: 247 ANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEE 306

Query: 333 IQNLSD-------------------GCTKTSLAWLFLDSNEITGSLP-NFGGFSSLKRLS 372
             N+S                        T+L  L L   +++G +P       SLK+L 
Sbjct: 307 FWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLD 366

Query: 373 IANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFS 432
           ++NN L G+I +++ +LV+L  L+LHNN+L G +S + +SNL+NL  L L  N+L  +  
Sbjct: 367 LSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPS-ISNLTNLQWLVLYHNNLEGKLP 425

Query: 433 HDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSF 492
            +     +L  + L   +     P+ + N   +  +D+  +     +P     +   L+ 
Sbjct: 426 KEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSI-GRLKELNL 484

Query: 493 FNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIP----------QLPL-------- 534
            +L  N++ G LP      H     +D++ NQ  G IP          QL L        
Sbjct: 485 LHLRQNELVGGLPASLGNCHQLNI-LDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGN 543

Query: 535 ---------NASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSL 585
                    N + +NLS N+ +G+I  LC  + +     D++NN     +P       +L
Sbjct: 544 LPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYL--SFDVTNNGFEDEIPLELGNSQNL 601

Query: 586 AILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSG 645
             L L  N   GKIP ++G ++ L  L + +N LTG +P       +LT +DL  N LSG
Sbjct: 602 DRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSG 661

Query: 646 EIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTA 705
            IP W+G+ L  L  L L SN+F  S+P +L +   + +L L  N+++G IP+   N  A
Sbjct: 662 PIPPWLGK-LSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGA 720

Query: 706 MTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSN 765
           +                    + L   K+ F        GS  +    L  +  L LS N
Sbjct: 721 L--------------------NVLNLDKNQF-------SGSLPQAMGKLSKLYELRLSRN 753

Query: 766 KLGGEVPEEIMDLAGLI-ALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLS 824
            L GE+P EI  L  L  AL+LS N  TG I   IG L  L+ LDLS NQ  G +P S+ 
Sbjct: 754 SLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVG 813

Query: 825 QLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNE-LCGLPLPNKC 871
            +  L  +++S+NNL GK+    Q   +    + GN  LCG PL ++C
Sbjct: 814 DMKSLGYLNVSFNNLGGKLKK--QFSRWPADSFLGNTGLCGSPL-SRC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  271 bits (693), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 269/848 (31%), Positives = 394/848 (46%), Gaps = 94/848 (11%)

Query: 35  RCIDEEREALLAFKQGLV-DESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHIL 93
           +  + E EAL +FK G+  D  G+LS W      R C  W G+ C + TGHV  + L   
Sbjct: 25  QSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHC-NWTGITC-DSTGHVVSVSLLEK 82

Query: 94  QVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGP 153
           Q      L+G +S ++  L +L  LDL+ N+F+G  IP  IG L++L+ L L    F+G 
Sbjct: 83  Q------LEGVLSPAIANLTYLQVLDLTSNSFTGK-IPAEIGKLTELNQLILYLNYFSGS 135

Query: 154 IPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLD 213
           IP  +                       W   L ++ YLDL  +                
Sbjct: 136 IPSGI-----------------------W--ELKNIFYLDLRNN---------------- 154

Query: 214 SLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINL 273
                 L+S D+P  I  +       +SL +I    NNLT  I   L ++    +++   
Sbjct: 155 ------LLSGDVPEEICKT-------SSLVLIGFDYNNLTGKIPECLGDLVH--LQMFVA 199

Query: 274 GSNQLQGSIPEAFGHMPSLNTLFLASNQFR-EIPKSLGNMCNLKSLTLSYNTLRGDLSEI 332
             N L GSIP + G + +L  L L+ NQ   +IP+  GN+ NL+SL L+ N L GD+   
Sbjct: 200 AGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAE 259

Query: 333 IQNLSDGCTKTSLAWLFLDSNEITGSLP-NFGGFSSLKRLSIANNRLNGTINKSVGQLVK 391
           I N S      SL  L L  N++TG +P   G    L+ L I  N+L  +I  S+ +L +
Sbjct: 260 IGNCS------SLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQ 313

Query: 392 LESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKI 451
           L  L L  N L G ISE  +  L +L +L L  N+ T EF         L+ + +G   I
Sbjct: 314 LTHLGLSENHLVGPISEE-IGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNI 372

Query: 452 GPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRF 511
               P  L     + +L   ++ ++  +P+   N T  L   +LS+NQ+ G++P    R 
Sbjct: 373 SGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCT-GLKLLDLSHNQMTGEIPRGFGRM 431

Query: 512 HPYRPGIDISSNQFEGPIPQLPLNAS---FLNLSKNKFSGSISFLCSITGHKLDYIDLSN 568
           +     I I  N F G IP    N S    L+++ N  +G++  L      KL  + +S 
Sbjct: 432 N--LTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKL-QKLRILQVSY 488

Query: 569 NLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFT 628
           N L+G +P        L IL L +N F G+IP  +  L  LQ L +Y+N L G +P    
Sbjct: 489 NSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMF 548

Query: 629 NGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLS 688
           +   L+++DL  N  SG+IP    + L +L  LSL+ NKFNGSIP  L  L+ +   D+S
Sbjct: 549 DMKLLSVLDLSNNKFSGQIPALFSK-LESLTYLSLQGNKFNGSIPASLKSLSLLNTFDIS 607

Query: 689 SNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTK--SYFDKAVLTWKGS 746
            N ++G IP       A        L   +N  T      L   +     D +   + GS
Sbjct: 608 DNLLTGTIP---GELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGS 664

Query: 747 QYEYQSTLGLVKILDLSSNKLGGEVPEEI---MDLAGLIALNLSRNTLTGQITPKIGQLK 803
                     V  LD S N L G +P+E+   MD+  +I+LNLSRN+ +G+I    G + 
Sbjct: 665 IPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDM--IISLNLSRNSFSGEIPQSFGNMT 722

Query: 804 SLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN-EL 862
            L  LDLS N   G IP SL+ LS L  + L+ NNL G +P     ++ + S   GN +L
Sbjct: 723 HLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDL 782

Query: 863 CGLPLPNK 870
           CG   P K
Sbjct: 783 CGSKKPLK 790

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  262 bits (670), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 276/954 (28%), Positives = 426/954 (44%), Gaps = 151/954 (15%)

Query: 17  VILFDQLEPRAADSSNIIRCIDEEREALLAFKQGLVDESG--ILSSW-GREDEKRDCCGW 73
           +I+F  L   +  SS+   C D++R+ALL F+      +   I++ W G  ++  DCC W
Sbjct: 15  IIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLW 74

Query: 74  RGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEF 133
            GV C++++G V  LD  I   F +  LK   +SSL  LQ+L +LD              
Sbjct: 75  NGVTCNDKSGQVISLD--IPNTFLNNYLK--TNSSLFKLQYLRHLD-------------- 116

Query: 134 IGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLD 193
                      L+N    G IP  LGN                         LS L  ++
Sbjct: 117 -----------LTNCNLYGEIPSSLGN-------------------------LSHLTLVN 140

Query: 194 LSFSNLSKFSNWMQV-LSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIV-ILGNN 251
           L F+   KF   +   +  L+ L+ L L +  L   IPSS   L+   +LE+    L   
Sbjct: 141 LYFN---KFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGK 197

Query: 252 LTDSIYPWLFNVSSNLVELINL--GSNQLQGSIPEAFGHMPSLNTLFLASNQFR-EIPKS 308
           + DSI         +L +L NL   SN L G IP + G++ +L  L L  NQ   E+P S
Sbjct: 198 IPDSI--------GDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPAS 249

Query: 309 LGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLP-NFGGFSS 367
           +GN+  L+ ++   N+L G++     NL      T L+   L SN  T + P +   F +
Sbjct: 250 IGNLIELRVMSFENNSLSGNIPISFANL------TKLSIFVLSSNNFTSTFPFDMSIFHN 303

Query: 368 LKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSL 427
           L+   ++ N  +G   KS+  +  LES++L  N   G I  A  S+ + L  L L  N L
Sbjct: 304 LEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRL 363

Query: 428 TLEFSHDWIPP-----FQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNW 482
                H  IP        L ++++         P  +     +L LD+S + +   VP  
Sbjct: 364 -----HGPIPESISRLLNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPAC 418

Query: 483 FWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLS 542
            W     L+   LS+N       N +S+       +D++SN F+GPIP +          
Sbjct: 419 LWR----LNTMVLSHNSFSS-FEN-TSQEEALIEELDLNSNSFQGPIPYM---------- 462

Query: 543 KNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFD-SLAILNLANNSFFGKIPD 601
                     +C ++   L ++DLSNNL SG +P C   F  S+  LNL +N+F G +PD
Sbjct: 463 ----------ICKLSS--LGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPD 510

Query: 602 SIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVL 661
                  L SL + +N+L G+ P    N   L L+++  N +    P+W+ E L +L VL
Sbjct: 511 IFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVL 569

Query: 662 SLKSNKFNGSIPLQLCHLA----NVQILDLSSNNISGIIPKCF----NNFTAMTHEKGSN 713
           +L+SNKF G  PL   H +    +++I+D+S NN SG +P  +     + T +T E    
Sbjct: 570 NLRSNKFYG--PLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQY 627

Query: 714 LTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPE 773
           +T    Y             SY+ +  +  KG    ++      + +D S NK+ G +PE
Sbjct: 628 MTEFWRY-----------ADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPE 676

Query: 774 EIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMD 833
            +  L  L  LNLS N  T  I   +  L  L+ LD+SRN+  G IP  L+ LS LS M+
Sbjct: 677 SLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMN 736

Query: 834 LSYNNLSGKIPSGTQLQSFSTSMYAGNE-LCGLPLPNKCPDEDSAPGPGKDDANTSEDED 892
            S+N L G +P GTQ Q    S +  N  L G  L + C D  +     +   + SE E+
Sbjct: 737 FSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEE 794

Query: 893 QFITLGFYVSLILGFFVGFWGFCGTLL--VKSSWRHRYYNFLTGVKNWFYVTAV 944
                  +V+  + +  G    CG ++    +S  H ++    G K    +T+V
Sbjct: 795 NMFN---WVAAAIAYGPGV--LCGLVIGHFYTSHNHEWFTEKFGRKQHKALTSV 843

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  256 bits (654), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 275/887 (31%), Positives = 401/887 (45%), Gaps = 116/887 (13%)

Query: 39  EEREALLAFKQGLV---DESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQV 95
           ++ + LL  K   +    E  +L  W         C W GV C  R   +  L+L  L  
Sbjct: 28  DDLQTLLELKNSFITNPKEEDVLRDWNSGSPSY--CNWTGVTCGGR--EIIGLNLSGL-- 81

Query: 96  FPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIP 155
                L G+IS S+    +L ++DLS N   G          S L  L L +   +G IP
Sbjct: 82  ----GLTGSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIP 137

Query: 156 LQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNL-----SKFSNWMQVLS 210
            QLG+L  L+ L +G N L +G   E   +L +L  L L+   L     S+F   +Q   
Sbjct: 138 SQLGSLVNLKSLKLGDNEL-NGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQ--- 193

Query: 211 KLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVEL 270
               L+ L L   +L   IP+    + + TSL +     N L  S+ P   N   NL + 
Sbjct: 194 ----LQTLILQDNELEGPIPAE---IGNCTSLALFAAAFNRLNGSL-PAELNRLKNL-QT 244

Query: 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE-IPKSLGNMCNLKSLTLSYNTLRGDL 329
           +NLG N   G IP   G + S+  L L  NQ +  IPK L  + NL++L LS N L G +
Sbjct: 245 LNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVI 304

Query: 330 SE------------IIQNLSDG------CT-KTSLAWLFLDSNEITGSLP-NFGGFSSLK 369
            E            + +N   G      C+  TSL  LFL   +++G +P       SLK
Sbjct: 305 HEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLK 364

Query: 370 RLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTL 429
            L ++NN L G I  S+ QLV+L +L+L+NNSL G +S + +SNL+NL    L  N+L  
Sbjct: 365 LLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSS-ISNLTNLQEFTLYHNNLEG 423

Query: 430 EFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYN 489
           +   +     +L  + L   +     P  + N  ++  +D   + +S  +P+    +  +
Sbjct: 424 KVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSI-GRLKD 482

Query: 490 LSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIP------------------- 530
           L+  +L  N++ G +P      H     ID++ NQ  G IP                   
Sbjct: 483 LTRLHLRENELVGNIPASLGNCHQMTV-IDLADNQLSGSIPSSFGFLTALELFMIYNNSL 541

Query: 531 --QLP------LNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQF 582
              LP       N + +N S NKF+GSIS LC  + + L + D++ N   G +P    + 
Sbjct: 542 QGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSY-LSF-DVTENGFEGDIPLELGKS 599

Query: 583 DSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNG 642
            +L  L L  N F G+IP + G +  L  L +  N L+G +P       +LT +DL  N 
Sbjct: 600 TNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNY 659

Query: 643 LSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNN 702
           LSG IPTW+G+ L  L  L L SNKF GS+P ++  L N+  L L  N+++G IP+   N
Sbjct: 660 LSGVIPTWLGK-LPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGN 718

Query: 703 FTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDL 762
             A+       L L  N  +     ++      F+                      L L
Sbjct: 719 LQALNA-----LNLEENQLSGPLPSTIGKLSKLFE----------------------LRL 751

Query: 763 SSNKLGGEVPEEIMDLAGLI-ALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPS 821
           S N L GE+P EI  L  L  AL+LS N  TG+I   I  L  L+ LDLS NQ  G +P 
Sbjct: 752 SRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPG 811

Query: 822 SLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNE-LCGLPL 867
            +  +  L  ++LSYNNL GK+    Q   +    + GN  LCG PL
Sbjct: 812 QIGDMKSLGYLNLSYNNLEGKLKK--QFSRWQADAFVGNAGLCGSPL 856

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  232 bits (592), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 254/838 (30%), Positives = 380/838 (45%), Gaps = 135/838 (16%)

Query: 40  EREALLAFKQGLVDESGILSSWGREDEKR---DCCGWRGVNCSNRTGHVYKLDLHILQVF 96
           E  ALL +K    + S  LSSW  +        C  W GV+C++R G + +L+L      
Sbjct: 33  EANALLKWKSTFTNSSK-LSSWVHDANTNTSFSCTSWYGVSCNSR-GSIEELNL------ 84

Query: 97  PSPCLKGTISSSLLI-LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIP 155
            +  ++GT      I L +L Y+DLS N  SG+  P+F G+LSKL Y  LS     G I 
Sbjct: 85  TNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQF-GNLSKLIYFDLSTNHLTGEIS 143

Query: 156 LQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSL 215
             LGNL  L VL +  N            +L+S+I  +L                 ++S+
Sbjct: 144 PSLGNLKNLTVLYLHQN------------YLTSVIPSELG---------------NMESM 176

Query: 216 KALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGS 275
             L L    L  +IPSS   L +  +L V+ +  N LT  I P L N+ S  +  + L  
Sbjct: 177 TDLALSQNKLTGSIPSS---LGNLKNLMVLYLYENYLTGVIPPELGNMES--MTDLALSQ 231

Query: 276 NQLQGSIPEAFGHMPSLNTLFLASNQFRE-IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQ 334
           N+L GSIP   G++ +L  L+L  N     IP  +GNM ++ +L LS N L G +   + 
Sbjct: 232 NKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLG 291

Query: 335 NLSDGCTKTSLAWLFLDSNEITGSLP-NFGGFSSLKRLSIANNRLNGTINKSVGQLVKLE 393
           NL +      L  L L  N +TG +P   G   S+  L ++NN+L G+I  S+G L  L 
Sbjct: 292 NLKN------LTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLT 345

Query: 394 SLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGP 453
            L+L+ N L GVI    L N+ ++  L L +N LT      +     L+ + L    +  
Sbjct: 346 ILYLYENYLTGVIPPE-LGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTG 404

Query: 454 RFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHP 513
             P+ L N   +++LD+S + ++ +VP+ F N T   S + L  N + G +P        
Sbjct: 405 VIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLY-LRVNHLSGAIP-------- 455

Query: 514 YRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSI-SFLCSITGHKLDYIDLSNNLLS 572
             PG+  SS+             + L L  N F+G     +C   G KL  I L  N L 
Sbjct: 456 --PGVANSSH------------LTTLILDTNNFTGFFPETVCK--GRKLQNISLDYNHLE 499

Query: 573 GRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQ 632
           G +P       SL       N F G I ++ G   +L  +   +N+  GE+ S +    +
Sbjct: 500 GPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPK 559

Query: 633 LTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNI 692
           L  + +  N ++G IPT I   +  LV L L +N   G +P  + +L N+  L L+ N +
Sbjct: 560 LGALIMSNNNITGAIPTEIW-NMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQL 618

Query: 693 SGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQS 752
           SG +P              + L+ ++N                                 
Sbjct: 619 SGRVP--------------AGLSFLTN--------------------------------- 631

Query: 753 TLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSR 812
               ++ LDLSSN    E+P+       L  +NLSRN   G I P++ +L  L  LDLS 
Sbjct: 632 ----LESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSI-PRLSKLTQLTQLDLSH 686

Query: 813 NQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQ-LQSFSTSMYAGNELCGLPLPN 869
           NQ  G IPS LS L  L  +DLS+NNLSG IP+  + + + +    + N+L G PLP+
Sbjct: 687 NQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEG-PLPD 743

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  231 bits (589), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 234/754 (31%), Positives = 351/754 (46%), Gaps = 93/754 (12%)

Query: 209 LSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLV 268
           +S L  L+ L L S     TIP+S  Y    T L  + +  N+L+  + P + N++S  +
Sbjct: 88  ISGLRMLRKLSLRSNSFNGTIPTSLAY---CTRLLSVFLQYNSLSGKLPPAMRNLTS--L 142

Query: 269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFR-EIPKSLGNMCNLKSLTLSYNTLRG 327
           E+ N+  N+L G IP   G   SL  L ++SN F  +IP  L N+  L+ L LSYN L G
Sbjct: 143 EVFNVAGNRLSGEIP--VGLPSSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTG 200

Query: 328 DLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSV 386
           ++   + NL       SL +L+LD N + G+LP+     SSL  LS + N + G I  + 
Sbjct: 201 EIPASLGNLQ------SLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAY 254

Query: 387 GQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQ------ 440
           G L KLE L L NN+  G +  +   N S LTI+ L  N+ +     D + P        
Sbjct: 255 GALPKLEVLSLSNNNFSGTVPFSLFCNTS-LTIVQLGFNAFS-----DIVRPETTANCRT 308

Query: 441 -LSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQ 499
            L  ++L   +I  RFP WL N   + +LD+S +  S  +P    N    L    L+NN 
Sbjct: 309 GLQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGN-LKRLEELKLANNS 367

Query: 500 IKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGH 559
           + G++P +  +       +D   N  +G IP+      FL   K                
Sbjct: 368 LTGEIP-VEIKQCGSLDVLDFEGNSLKGQIPE------FLGYMK---------------- 404

Query: 560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRL 619
            L  + L  N  SG +P        L  LNL  N+  G  P  +  L +L  L L  NR 
Sbjct: 405 ALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRF 464

Query: 620 TGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHL 679
           +G +P   +N S L+ ++L  NG SGEIP  +G  L  L  L L     +G +P++L  L
Sbjct: 465 SGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGN-LFKLTALDLSKQNMSGEVPVELSGL 523

Query: 680 ANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKA 739
            NVQ++ L  NN SG++P+ F++  ++ +   S+ +       +  +  L  + S  D  
Sbjct: 524 PNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNH 583

Query: 740 VLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI 799
           +    GS          +++L+L SN+L G +P ++  L  L  L+L +N L+G+I P+I
Sbjct: 584 I---SGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEI 640

Query: 800 GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSF------- 852
            Q  SL+ L L  N   G IP S S LS L+ MDLS NNL+G+IP+   L S        
Sbjct: 641 SQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNV 700

Query: 853 ------------------STSMYAGN-ELCGLPLPNKCPDEDSAPGPGKDDANTSEDEDQ 893
                             +TS ++GN ELCG PL  +C   +S+   GK           
Sbjct: 701 SSNNLKGEIPASLGSRINNTSEFSGNTELCGKPLNRRC---ESSTAEGKKK---KRKMIL 754

Query: 894 FITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHR 927
            I +    + +L  F  F+ +  TLL    WR +
Sbjct: 755 MIVMAAIGAFLLSLFCCFYVY--TLL---KWRKK 783

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  211 bits (538), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 207/636 (32%), Positives = 314/636 (49%), Gaps = 49/636 (7%)

Query: 236 LNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTL 295
           ++S TSL+ +VI   NLT +I   + + S  +V  I+L SN L G IP + G + +L  L
Sbjct: 102 ISSFTSLQKLVISNTNLTGAISSEIGDCSELIV--IDLSSNSLVGEIPSSLGKLKNLQEL 159

Query: 296 FLASNQFR-EIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNE 354
            L SN    +IP  LG+  +LK+L +  N L  +L      L  G   T  +     ++E
Sbjct: 160 CLNSNGLTGKIPPELGDCVSLKNLEIFDNYLSENLP-----LELGKISTLESIRAGGNSE 214

Query: 355 ITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSN 413
           ++G +P   G   +LK L +A  +++G++  S+GQL KL+SL +++  L G I +  L N
Sbjct: 215 LSGKIPEEIGNCRNLKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKE-LGN 273

Query: 414 LSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNS 473
            S L  L+L DN L+     +      L ++ L    +    P+ +     + ++D+S +
Sbjct: 274 CSELINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMN 333

Query: 474 GISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLP 533
             S T+P  F N + NL    LS+N I G +P++ S          I +NQ  G IP   
Sbjct: 334 YFSGTIPKSFGNLS-NLQELMLSSNNITGSIPSILSNCTKLVQ-FQIDANQISGLIPPEI 391

Query: 534 LNASFLNLS---KNKFSGSISFLCSITG-HKLDYIDLSNNLLSGRLPDCWSQFDSLAILN 589
                LN+    +NK  G+I     + G   L  +DLS N L+G LP    Q  +L  L 
Sbjct: 392 GLLKELNIFLGWQNKLEGNIPD--ELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLL 449

Query: 590 LANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPT 649
           L +N+  G IP  IG   +L  L L NNR+TGE+P        L+ +DL +N LSG +P 
Sbjct: 450 LISNAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPL 509

Query: 650 WIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHE 709
            I      L +L+L +N   G +PL L  L  +Q+LD+SSN+++G IP    +  ++   
Sbjct: 510 EISN-CRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISL--- 565

Query: 710 KGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGG 769
                            + L  +K+ F+  + +  G     Q       +LDLSSN + G
Sbjct: 566 -----------------NRLILSKNSFNGEIPSSLGHCTNLQ-------LLDLSSNNISG 601

Query: 770 EVPEEIMDLAGL-IALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSR 828
            +PEE+ D+  L IALNLS N+L G I  +I  L  L  LD+S N   G + S+LS L  
Sbjct: 602 TIPEELFDIQDLDIALNLSWNSLDGFIPERISALNRLSVLDISHNMLSGDL-SALSGLEN 660

Query: 829 LSVMDLSYNNLSGKIP-SGTQLQSFSTSMYAGNELC 863
           L  +++S+N  SG +P S    Q     M   N LC
Sbjct: 661 LVSLNISHNRFSGYLPDSKVFRQLIGAEMEGNNGLC 696

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  211 bits (537), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 206/649 (31%), Positives = 300/649 (46%), Gaps = 67/649 (10%)

Query: 250 NNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFR-EIPKS 308
           N L+  I   + N SS  +E++ L +NQ  G IP   G + SL  L + +N+    +P  
Sbjct: 107 NGLSGKIPKEIGNCSS--LEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVE 164

Query: 309 LGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSS 367
           +GN+ +L  L    N + G L   I NL        L       N I+GSLP+  GG  S
Sbjct: 165 IGNLLSLSQLVTYSNNISGQLPRSIGNLK------RLTSFRAGQNMISGSLPSEIGGCES 218

Query: 368 LKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSL 427
           L  L +A N+L+G + K +G L KL  + L  N   G I    +SN ++L  L L  N L
Sbjct: 219 LVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPRE-ISNCTSLETLALYKNQL 277

Query: 428 TLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQT 487
                 +      L  + L    +    P+ + N +  + +D S + ++  +P    N  
Sbjct: 278 VGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGN-I 336

Query: 488 YNLSFFNLSNNQIKGKLP-NLSSRFHPYRPGIDISSNQFEGPIP---QLPLNASFLNLSK 543
             L    L  NQ+ G +P  LS+  +  +  +D+S N   GPIP   Q       L L +
Sbjct: 337 EGLELLYLFENQLTGTIPVELSTLKNLSK--LDLSINALTGPIPLGFQYLRGLFMLQLFQ 394

Query: 544 NKFSGSISFLCSITGHKLDY------IDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFG 597
           N  SG+I         KL +      +D+S+N LSGR+P       ++ ILNL  N+  G
Sbjct: 395 NSLSGTIP-------PKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSG 447

Query: 598 KIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVN 657
            IP  I   K L  L L  N L G  PS       +T ++LG+N   G IP  +G     
Sbjct: 448 NIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGN-CSA 506

Query: 658 LVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPK-------------CFNNFT 704
           L  L L  N F G +P ++  L+ +  L++SSN ++G +P              C NNF+
Sbjct: 507 LQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFS 566

Query: 705 AMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSS 764
                     TL S   +    + LK + +     +    G+       L  +  L +  
Sbjct: 567 G---------TLPSEVGSLYQLELLKLSNNNLSGTIPVALGN-------LSRLTELQMGG 610

Query: 765 NKLGGEVPEEIMDLAGL-IALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSL 823
           N   G +P E+  L GL IALNLS N LTG+I P++  L  L+FL L+ N   G IPSS 
Sbjct: 611 NLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSF 670

Query: 824 SQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNE-LCGLPLPNKC 871
           + LS L   + SYN+L+G IP    L++ S S + GNE LCG PL N+C
Sbjct: 671 ANLSSLLGYNFSYNSLTGPIP---LLRNISMSSFIGNEGLCGPPL-NQC 715

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  208 bits (529), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 201/644 (31%), Positives = 310/644 (48%), Gaps = 60/644 (9%)

Query: 262 NVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREI-PKSLGNMCNLKSLTL 320
           ++S N+VE +NL ++ L G +    G + SL TL L+ N F  + P +LGN  +L+ L L
Sbjct: 72  DLSGNVVETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDL 131

Query: 321 SYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLP-NFGGFSSLKRLSIANNRLN 379
           S N   G++ +I  +L +      L +L+LD N ++G +P + GG   L  L ++ N L+
Sbjct: 132 SNNDFSGEVPDIFGSLQN------LTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLS 185

Query: 380 GTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPF 439
           GTI + +G   KLE L L+NN L G +  A L  L NL  L++++NSL            
Sbjct: 186 GTIPELLGNCSKLEYLALNNNKLNGSLP-ASLYLLENLGELFVSNNSLGGRLHFGSSNCK 244

Query: 440 QLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQ 499
           +L  ++L         P  + N + + SL +    ++ T+P+        +S  +LS+N+
Sbjct: 245 KLVSLDLSFNDFQGGVPPEIGNCSSLHSLVMVKCNLTGTIPSSM-GMLRKVSVIDLSDNR 303

Query: 500 IKGKLP----NLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSK-----NKFSGSI 550
           + G +P    N SS        + ++ NQ +G IP  P  +    L       NK SG I
Sbjct: 304 LSGNIPQELGNCSSL-----ETLKLNDNQLQGEIP--PALSKLKKLQSLELFFNKLSGEI 356

Query: 551 SF-LCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNL 609
              +  I    L  + + NN L+G LP   +Q   L  L L NN F+G IP S+G  ++L
Sbjct: 357 PIGIWKI--QSLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLGLNRSL 414

Query: 610 QSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGE---------------G 654
           + + L  NR TGE+P    +G +L L  LG N L G+IP  I +               G
Sbjct: 415 EEVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGKIPASIRQCKTLERVRLEDNKLSG 474

Query: 655 LV-------NLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMT 707
           ++       +L  ++L SN F GSIP  L    N+  +DLS N ++G+IP    N  ++ 
Sbjct: 475 VLPEFPESLSLSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKLTGLIPPELGNLQSLG 534

Query: 708 HEKGSNLTLISNYYTSLAYDSLKTTKS--YFDKAVLTWKGSQYEYQSTLGLVKILDLSSN 765
                 L L  NY        L       YFD    +  GS      +   +  L LS N
Sbjct: 535 L-----LNLSHNYLEGPLPSQLSGCARLLYFDVGSNSLNGSIPSSFRSWKSLSTLVLSDN 589

Query: 766 KLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDF-LDLSRNQFFGSIPSSLS 824
              G +P+ + +L  L  L ++RN   G+I   +G LKSL + LDLS N F G IP++L 
Sbjct: 590 NFLGAIPQFLAELDRLSDLRIARNAFGGKIPSSVGLLKSLRYGLDLSANVFTGEIPTTLG 649

Query: 825 QLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNELCGLPLP 868
            L  L  +++S N L+G +     L+S +    + N+  G P+P
Sbjct: 650 ALINLERLNISNNKLTGPLSVLQSLKSLNQVDVSYNQFTG-PIP 692

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  205 bits (521), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 234/769 (30%), Positives = 340/769 (44%), Gaps = 109/769 (14%)

Query: 37  IDEEREALLAFK-QGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQV 95
           ++ + + LL  K +G  D    L +W   DE    C W GVNCS++        L +  +
Sbjct: 33  LNSDGQFLLELKNRGFQDSLNRLHNWNGIDETP--CNWIGVNCSSQGSSSSSNSLVVTSL 90

Query: 96  -FPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPI 154
              S  L G +S S+  L +L YL+L+ N  +G  IP  IG+ SKL  + L+N +F G I
Sbjct: 91  DLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGD-IPREIGNCSKLEVMFLNNNQFGGSI 149

Query: 155 PLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDS 214
           P+++  LS+L+  +I  N L                                        
Sbjct: 150 PVEINKLSQLRSFNICNNKL---------------------------------------- 169

Query: 215 LKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLG 274
                  S  LP  I   DLY     +LE +V   NNLT  +   L N+  N +     G
Sbjct: 170 -------SGPLPEEI--GDLY-----NLEELVAYTNNLTGPLPRSLGNL--NKLTTFRAG 213

Query: 275 SNQLQGSIPEAFGHMPSLNTLFLASNQFR-EIPKSLGNMCNLKSLTLSYNTLRGDLSEII 333
            N   G+IP   G   +L  L LA N    E+PK +G +  L+ + L  N   G + + I
Sbjct: 214 QNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDI 273

Query: 334 QNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKL 392
            NL      TSL  L L  N + G +P+  G   SLK+L +  N+LNGTI K +G+L K+
Sbjct: 274 GNL------TSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKV 327

Query: 393 ESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIG 452
             +    N L G I    LS +S L +LYL  N LT       I P +LS+         
Sbjct: 328 MEIDFSENLLSGEIP-VELSKISELRLLYLFQNKLT------GIIPNELSK--------- 371

Query: 453 PRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFH 512
                 LRN   +  LD+S + ++  +P  F N T ++    L +N + G +P     + 
Sbjct: 372 ------LRN---LAKLDLSINSLTGPIPPGFQNLT-SMRQLQLFHNSLSGVIPQGLGLYS 421

Query: 513 PYRPGIDISSNQFEGPIPQLPLNAS---FLNLSKNKFSGSISFLCSITGHKLDYIDLSNN 569
           P    +D S NQ  G IP      S    LNL  N+  G+I     +    L  + +  N
Sbjct: 422 PLWV-VDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIP-PGVLRCKSLLQLRVVGN 479

Query: 570 LLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTN 629
            L+G+ P    +  +L+ + L  N F G +P  IG  + LQ L L  N+ +  LP+  + 
Sbjct: 480 RLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISK 539

Query: 630 GSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSS 689
            S L   ++  N L+G IP+ I    + L  L L  N F GS+P +L  L  ++IL LS 
Sbjct: 540 LSNLVTFNVSSNSLTGPIPSEIANCKM-LQRLDLSRNSFIGSLPPELGSLHQLEILRLSE 598

Query: 690 NNISGIIPKCFNNFTAMTH-EKGSNL--TLISNYYTSLAYDSLKTTKSYFDKAVLTWKGS 746
           N  SG IP    N T +T  + G NL    I      L+   +    SY D     + G 
Sbjct: 599 NRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYND-----FSGE 653

Query: 747 QYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQI 795
                  L L+  L L++N L GE+P    +L+ L+  N S N LTGQ+
Sbjct: 654 IPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQL 702

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	956
225464712	1021	PREDICTED: receptor-like protein 12-like	0.940	0.880	0.521	0.0
359490572	975	PREDICTED: probable LRR receptor-like se	0.924	0.906	0.521	0.0
224105895	963	predicted protein [Populus trichocarpa]	0.955	0.948	0.511	0.0
225466147	1024	PREDICTED: LRR receptor-like serine/thre	0.947	0.884	0.496	0.0
359490576	972	PREDICTED: LRR receptor-like serine/thre	0.940	0.924	0.473	0.0
225462661	1485	PREDICTED: LRR receptor-like serine/thre	0.928	0.597	0.479	0.0
147807651	971	hypothetical protein VITISV_018647 [Viti	0.939	0.924	0.467	0.0
359490560	1010	PREDICTED: LRR receptor-like serine/thre	0.938	0.888	0.460	0.0
224116866	994	predicted protein [Populus trichocarpa]	0.925	0.890	0.463	0.0
224115848	884	predicted protein [Populus trichocarpa]	0.916	0.990	0.457	0.0

>gi|225464712|ref|XP_002276171.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  891 bits (2302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/976 (52%), Positives = 626/976 (64%), Gaps = 77/976 (7%)

Query: 36   CIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHIL-- 93
            C+++ER+ALL FKQGLVD+ GILSSWG E+++RDCC WRGV CSNRT HV  LDLH L  
Sbjct: 52   CVEKERQALLDFKQGLVDDFGILSSWGNEEDRRDCCKWRGVQCSNRTSHVIMLDLHALPT 111

Query: 94   -QVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAG 152
              V     L+G ISSSLL LQHL +LDLS N+F GS +PEFIG  SKL YL LS    AG
Sbjct: 112  DTVHKYQSLRGRISSSLLELQHLNHLDLSLNDFQGSYVPEFIGLFSKLRYLNLSEARLAG 171

Query: 153  PIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKL 212
             IP  LGNLS L  LD+  N  +S E LEWLS LSSL +LDLS  NL K   W  V+++L
Sbjct: 172  MIPSHLGNLSNLHFLDLSRNYGMSSETLEWLSRLSSLRHLDLSGLNLDKAIYWEHVINRL 231

Query: 213  DSLKALYLISCDLPPTI-PSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVEL- 270
             SL  L L    LP  I PS+  Y NSS SL V+ +  N L+ S+YPWLFN+SS+LV L 
Sbjct: 232  PSLTDLLLHDSALPQIITPSALSYTNSSKSLVVLDLSWNFLSSSVYPWLFNLSSSLVHLD 291

Query: 271  ---------------------------------------------INLGSNQLQGSIPEA 285
                                                         ++L  N L GSIP+ 
Sbjct: 292  LSINQIQGLIPDTFGEMVSLEYLDLFFNQLEGEIPQSLTSTSLVHLDLSVNHLHGSIPDT 351

Query: 286  FGHMPSLNTLFLASNQFR-EIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTS 344
            FGHM SL+ L L+ NQ    IPKS  N+C+L+ + L  N+L   L E +QN S  C+K +
Sbjct: 352  FGHMTSLSYLDLSLNQLEGGIPKSFKNLCSLQMVMLLSNSLTAQLPEFVQN-SLSCSKDT 410

Query: 345  LAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRG 404
            L  L L  N+ TGS PNF GFS L  L I +NRLNGT  + +GQL +LE L +  NSL G
Sbjct: 411  LEVLVLSWNQFTGSFPNFTGFSVLGHLYIDHNRLNGTFPEHIGQLSQLEVLEISGNSLHG 470

Query: 405  VISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQ 464
             I+EA LS+LS L  L L+ NSL LE S +W PPFQ+  + L SCK+GP FP WL+ Q  
Sbjct: 471  NITEAHLSSLSKLYWLDLSSNSLALELSPEWTPPFQVGYLGLLSCKMGPNFPGWLQTQKD 530

Query: 465  ILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQ 524
            + SLDISNS ISD +P+WFWN T  L    ++NNQI+G++P+L          ID+S N+
Sbjct: 531  LFSLDISNSSISDVIPSWFWNLTSKLIKLRIANNQIRGRVPSLRMETAAV---IDLSLNR 587

Query: 525  FEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQF-D 583
            FEGPIP LP     L+LSKN FSGSIS LC+I    L Y+DLS+NLLSG LPDCW Q+ D
Sbjct: 588  FEGPIPSLPSGVRVLSLSKNLFSGSISLLCTIVDGALSYLDLSDNLLSGALPDCWQQWRD 647

Query: 584  SLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGL 643
             L ILNLANN+F GK+P S+G L  LQ+L LYNN   GELPS   N ++L L+D+GKN  
Sbjct: 648  QLQILNLANNNFSGKLPYSLGSLAALQTLHLYNNGFLGELPSSLMNCTKLRLVDMGKNRF 707

Query: 644  SGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNF 703
            SGEIPTWIGE L +LVVLSL+SN+F+GSI   +C L  +QILD S NNISG IP+C NNF
Sbjct: 708  SGEIPTWIGERLSDLVVLSLRSNEFHGSISSDICLLKELQILDFSRNNISGTIPRCLNNF 767

Query: 704  TAMTHEKGSNLTLISNYYTSL----------------AYD--SLKTTKSYFDKAVLTWKG 745
            TAM  +     ++I++ Y +L                AY   S  T   Y D A++ WKG
Sbjct: 768  TAMAQKM--IYSVIAHDYLALSIVPRGRNNLGITPRWAYSSGSFDTIARYVDSALIPWKG 825

Query: 746  SQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSL 805
             ++EY++ LGLV+ +DLSSNKL GE+P+EI  L  LI+LNLSRN L GQI   IGQLKSL
Sbjct: 826  GEFEYKNILGLVRSIDLSSNKLSGEIPKEITKLMELISLNLSRNHLNGQIPSMIGQLKSL 885

Query: 806  DFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCG 864
            D LDLS+NQ  G IPSSLSQ+ RLSV+DLS NNLSG+IPSGTQLQ F  S Y GN ELCG
Sbjct: 886  DVLDLSKNQLDGKIPSSLSQIDRLSVLDLSSNNLSGQIPSGTQLQGFEASSYMGNPELCG 945

Query: 865  LPLPNKCPDEDSAPGPGKDDANTSEDEDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSW 924
             PL  KC ++++A      D N  + +D      FYVS+ LGF VGFWG  GTL++KSSW
Sbjct: 946  SPLKTKCQEDETAQTSPTSDGNEDDLQDDEFDPWFYVSIALGFLVGFWGVWGTLVLKSSW 1005

Query: 925  RHRYYNFLTGVKNWFY 940
               Y+ FL  +K+WF+
Sbjct: 1006 SEAYFRFLNKIKDWFF 1021

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490572|ref|XP_003634116.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  869 bits (2245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/946 (52%), Positives = 626/946 (66%), Gaps = 62/946 (6%)

Query: 34  IRCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHIL 93
           + CI+ ER+ALL FK+ + D+ GILSSW  E  KRDCC WRGV CS++TGH+  LDL   
Sbjct: 34  VGCIERERQALLKFKEDIADDFGILSSWRSEKNKRDCCKWRGVQCSSQTGHITSLDLSAY 93

Query: 94  QVFPS-PCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAG 152
           +       L+G IS SLL LQ L +LDLSGN+F G S+PEFIGSL+K+ YL LS+T  AG
Sbjct: 94  EYKDEFRHLRGKISPSLLELQQLNHLDLSGNDFEGRSMPEFIGSLTKMRYLDLSSTYLAG 153

Query: 153 PIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKL 212
           P+P QLGNLS L  LD+  NS +S ENL+WLS LSSL +L L+  NLSK   W   ++KL
Sbjct: 154 PLPHQLGNLSNLNFLDLSGNSNMSSENLDWLSRLSSLTHLGLNHLNLSKAIRWADAINKL 213

Query: 213 DSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVEL-- 270
            SL  L L SCDLP  I  S   + SS SL V+ +  N L+ SIYPWLFN +S+LV L  
Sbjct: 214 PSLIDLLLKSCDLPSPITPSLSLVTSSMSLAVLDLSCNQLSTSIYPWLFNFNSSLVHLDL 273

Query: 271 -------------------------------------------INLGSNQLQGSIPEAFG 287
                                                      ++L +NQLQGSIP+ FG
Sbjct: 274 SYNHLQASPPDAFGNMVSLEYLDLSWNQLKGEIPKSFSSSLVFLDLSNNQLQGSIPDTFG 333

Query: 288 HMPSLNTLFLASNQFR-EIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLA 346
           +M SL T+ L  NQ   EIPKS  N+CNL+ L L  N L G L   ++NL   C   +L 
Sbjct: 334 NMTSLRTVNLTRNQLEGEIPKSFNNLCNLQILKLHRNNLAGVL---VKNLL-ACANDTLE 389

Query: 347 WLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVI 406
            L L  N+  GSLP+  GFSSL RL + +N+LNGT+ +S+ QL +LE L + +NSL+G +
Sbjct: 390 ILDLSHNQFIGSLPDLIGFSSLTRLHLGHNQLNGTLPESIAQLAQLELLKIPSNSLQGTV 449

Query: 407 SEAFLSNLSNLTILYLADNSL-TLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQI 465
           SEA L +LS L  L L+ NSL TL  S DW+P FQL+ + L SCK+GPRFP WLR Q  +
Sbjct: 450 SEAHLFSLSKLQRLDLSFNSLLTLNLSSDWVPQFQLTHIFLASCKLGPRFPGWLRTQKGV 509

Query: 466 LSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQF 525
             LDIS SGISD +PNWFWN T NL+  N+SNNQI G +PN S  F  + P +D+SSN F
Sbjct: 510 GWLDISGSGISDVIPNWFWNFTSNLNRLNISNNQITGVVPNASIEFSRF-PQMDMSSNYF 568

Query: 526 EGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSL 585
           EG IP     A +L+LSKN FSGSIS LC+++     Y+DLSNNLLSG LP+CW+Q++ L
Sbjct: 569 EGSIPVFIFYAGWLDLSKNMFSGSISSLCAVSRGASAYLDLSNNLLSGELPNCWAQWEGL 628

Query: 586 AILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSG 645
            +LNL NN+F GKI DSIG L+ ++SL L NN+LTGELP    N ++L ++DLG+N L G
Sbjct: 629 VVLNLENNNFSGKIQDSIGSLEAIESLHLRNNKLTGELPLSLKNCTKLRVIDLGRNKLCG 688

Query: 646 EIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTA 705
            IP+WIG  L NLVVL+L+ N+F GSIP+ +C L  +QILDLS+NNISG+IP+CFNNFTA
Sbjct: 689 NIPSWIGRSLPNLVVLNLRFNEFYGSIPMDMCQLKKIQILDLSNNNISGMIPRCFNNFTA 748

Query: 706 MTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSN 765
           M  ++GS   +I+  YT   +  L    SY DK ++ WKG + EY+ TLGL+K +DLSSN
Sbjct: 749 MV-QQGS--LVITYNYTIPCFKPLSRPSSYVDKQMVQWKGRELEYEKTLGLLKSIDLSSN 805

Query: 766 KLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQ 825
           +L GE+P E+ +L  LI+LNLSRN LTG I P IGQLK++D LDLS N+ FG IPS+LSQ
Sbjct: 806 ELSGEIPREVTNLLDLISLNLSRNFLTGLIPPTIGQLKAMDALDLSWNRLFGKIPSNLSQ 865

Query: 826 LSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCGLPLPNKC-PDEDSAPGPGKD 883
           + RLSV+DLS+N+  GKIPSGTQLQSF++S Y GN +LCG PL  KC  DE     P  +
Sbjct: 866 IDRLSVLDLSHNDFWGKIPSGTQLQSFNSSTYEGNPKLCGPPLLKKCLEDERGEHSPPNE 925

Query: 884 DANTSEDEDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHRYY 929
                E  D    L FY+ + LGF VGFWG CGTLL+ SSWR+  +
Sbjct: 926 GHVQKEAND----LWFYIGVALGFIVGFWGICGTLLLNSSWRNANF 967

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105895|ref|XP_002333753.1| predicted protein [Populus trichocarpa] gi|222838401|gb|EEE76766.1| predicted protein [Populus trichocarpa]

 Score =  831 bits (2146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/935 (51%), Positives = 622/935 (66%), Gaps = 22/935 (2%)

Query: 34  IRCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHIL 93
           I CI+ ER+ALL FK+ ++DE G+LSSWG E+EKRDCC WRGV C N TGHV  L+LH  
Sbjct: 30  IGCIERERQALLKFKEDIIDEDGVLSSWGGEEEKRDCCKWRGVGCDNITGHVTSLNLHSS 89

Query: 94  QVFP---SPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEF 150
            ++    +P L G +S+SLL LQHL YLDLS NN    SI +FIGSLS L YL LS   F
Sbjct: 90  PLYEHHFTP-LTGKVSNSLLELQHLNYLDLSLNNLD-ESIMDFIGSLSSLRYLNLSYNLF 147

Query: 151 AGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLS 210
              IP  L NLSRLQ LD+ ++   S ENL WLSHLSSL +LDLS S+LSK ++W+QV++
Sbjct: 148 TVTIPYHLRNLSRLQSLDLSYSFDASVENLGWLSHLSSLEHLDLSGSDLSKVNDWLQVVT 207

Query: 211 KLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVEL 270
            L  LK L L  C L   IPS   ++NSS  L V+ +  NNL+ +IYPWL+N+S++L +L
Sbjct: 208 NLPRLKDLRLNQCSLTDIIPSPLSFMNSSKFLAVLHLSNNNLSSAIYPWLYNLSNSLADL 267

Query: 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE-IPKSLGNMCNLKSLTLSYNTLRGDL 329
            +L  NQLQG +P+ F  M +L  L L+ NQ    IP+SLG MC+L +L L +N L G+L
Sbjct: 268 -DLSGNQLQGLVPDGFRKMSALTNLVLSRNQLEGGIPRSLGEMCSLHTLDLCHNNLTGEL 326

Query: 330 SEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQL 389
           S++ +NL  G T++SL  L L  N++ GSL +   FSSL+ L I+NN+LNG+I +S+G L
Sbjct: 327 SDLTRNLY-GRTESSLEILRLCQNQLRGSLTDIARFSSLRELDISNNQLNGSIPESIGFL 385

Query: 390 VKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSC 449
            KL+   +  NSL+G++S    SNLS L  L L+ NSL L F  DW P FQL  ++L SC
Sbjct: 386 SKLDYFDVSFNSLQGLVSGGHFSNLSKLKHLDLSYNSLVLRFKSDWDPAFQLKNIHLSSC 445

Query: 450 KIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSS 509
            +GP FPKWLR Q ++  LDIS++ ISDTVPNWFWN    L+F N+S+N ++G LP+ SS
Sbjct: 446 HLGPCFPKWLRTQIKVRLLDISSASISDTVPNWFWNLLPKLAFLNISHNLMRGTLPDFSS 505

Query: 510 --RFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLS 567
                   PG D+S N+FEG +P  P N + L LS N FSG IS +C+I G  L ++DLS
Sbjct: 506 VDAVDDTFPGFDLSFNRFEGLLPAFPFNTASLILSNNLFSGPISLICNIVGKDLSFLDLS 565

Query: 568 NNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFF 627
           NNLL+G+LP+C+  + +L +LNLANN+  G+IP S+G L +LQ+LSL  N L GELP   
Sbjct: 566 NNLLTGQLPNCFMNWSTLVVLNLANNNLSGEIPSSVGSLFSLQTLSLNKNSLYGELPMSL 625

Query: 628 TNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDL 687
            N S L  +DL +N LSGEIP WIGE L +L+ LSLKSN+F GSIPL LC L N++ILDL
Sbjct: 626 KNCSMLKFLDLSRNQLSGEIPAWIGESLSSLMFLSLKSNEFIGSIPLHLCQLTNLRILDL 685

Query: 688 SSNNISGIIPKCFNNFTAMTHEKGSNLTLISN-YYTSLAYDSLKTTKSYFDKAVLTWKGS 746
           S N ISG IPKC NN T M   KG   T+I N Y TS+   ++ + + Y +KA + WKG 
Sbjct: 686 SQNTISGAIPKCLNNLTTMV-LKGEAETIIDNLYLTSMRCGAIFSGRYYINKAWVGWKGR 744

Query: 747 QYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLD 806
            YEY+  LGL++++D + N L GE+PEEI  L GL+ALNLSRN LTG I   IG LKSL+
Sbjct: 745 DYEYERYLGLLRVIDFAGNNLSGEIPEEITGLLGLVALNLSRNNLTGVIPQTIGLLKSLE 804

Query: 807 FLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCGL 865
            LDLS NQF G+IP ++  L+ LS +++SYNNLSG+IPS TQLQSF  S + GN  LCGL
Sbjct: 805 SLDLSGNQFSGAIPVTMGDLNFLSYLNVSYNNLSGQIPSSTQLQSFDASAFIGNPALCGL 864

Query: 866 PLPNKC-----PDEDSAPGPGKDDANTSEDEDQFITLGFYVSLILGFFVGFWGFCGTLLV 920
           P+ NKC     P      G  +D+  T  +     +  F  ++ +GF V FWG  G LL+
Sbjct: 865 PVTNKCLGGDLPRNLVMNGVIQDNQETVHE----FSAWFCTAMGIGFSVFFWGVSGALLL 920

Query: 921 KSSWRHRYYNFLTGVKNWFYVTAVVNIAKLQRRFR 955
             SWRH Y+ FL    +W YV   V  A+LQR F+
Sbjct: 921 IRSWRHAYFRFLDESWDWLYVKVAVRKARLQREFQ 955

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466147|ref|XP_002270042.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1014 (49%), Positives = 649/1014 (64%), Gaps = 108/1014 (10%)

Query: 33   IIRCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHI 92
            +  CI+ ER+ALL F++GLVD  G+LSSWG  D+ RDCC WRGV CSN++GH+  L L  
Sbjct: 27   VTGCIERERQALLHFRRGLVDRYGLLSSWG--DDNRDCCQWRGVQCSNQSGHIIMLHL-- 82

Query: 93   LQVFPSP------------CLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKL 140
                P+P             L+G IS SLL L HLT+LDLS N+F G  IP F+GSLS++
Sbjct: 83   ----PAPPNEDYSQDVIYQSLRGEISPSLLELDHLTHLDLSYNDFEGRHIPPFLGSLSRM 138

Query: 141  SYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLS 200
             YL LS+  FA  +P QLGNLS L  LD+  N L++  NLEWLS LSSL +LDLS  NLS
Sbjct: 139  QYLNLSHANFAQTVPTQLGNLSNLLSLDLSDNYLLNSGNLEWLSRLSSLRHLDLSSVNLS 198

Query: 201  KFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYL---NSSTSLEVIVILGNNLTDSIY 257
            +  +W Q ++KL SL  L L  C LPP  P +   L   NSS  L  + + GN LT SIY
Sbjct: 199  EAIHWSQAINKLPSLIHLDLQHCYLPPIPPLTIPSLSHGNSSVPLVFLDLSGNYLTSSIY 258

Query: 258  PWLFNVSSNLVEL----------------------------------------------- 270
            PWL N S+ L+ L                                               
Sbjct: 259  PWLLNFSTTLLHLDLSFNGLNGSIPEYAFGNMSSLEYLDLHSSELDDEIPDTIGDMGSLA 318

Query: 271  -INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFR-EIPKSLGNMCNLKSLTLSYNTLRGD 328
             +++  NQL GSIP+  G M  L+ L L+ NQ +  IP ++GNM +LK L+LS N L+G+
Sbjct: 319  YLDISENQLWGSIPDTVGKMVLLSHLDLSLNQLQGSIPDTVGNMVSLKKLSLSENHLQGE 378

Query: 329  LSEIIQNLSD--------------------GCTKTSLAWLFLDSNEITGSLPNFGGFSSL 368
            + + + NL +                     C   +L  LFL  N+ +GS+P   GFSSL
Sbjct: 379  IPKSLSNLCNLQELELDRNNLSGQLAPDFVACANDTLETLFLSDNQFSGSVPALIGFSSL 438

Query: 369  KRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
            + L +  N+LNGT+ +SVGQL  L+SL + +NSL+G ISEA L NLS L+ L L+ NSLT
Sbjct: 439  RELHLDFNQLNGTLPESVGQLANLQSLDIASNSLQGTISEAHLFNLSWLSYLNLSSNSLT 498

Query: 429  LEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTY 488
               S DW+PPFQL  + L SCK+GPRFP WLR QNQ+  LDISNS ISD +P+WFWN T 
Sbjct: 499  FNMSLDWVPPFQLLSLRLASCKLGPRFPSWLRTQNQLSELDISNSEISDVLPDWFWNVTS 558

Query: 489  NLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSG 548
             ++  ++SNN+IKG LPNLSS F  +   ID+SSN FEG IPQLP +  +L+LS NK SG
Sbjct: 559  TVNTLSISNNRIKGTLPNLSSEFGSFS-NIDMSSNCFEGSIPQLPYDVQWLDLSNNKLSG 617

Query: 549  SISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKN 608
            SIS LC++ G +L  +DLSNN LSG LP+CW+Q++SL +LNL NN F G+IP S G L++
Sbjct: 618  SISLLCTV-GTELLLLDLSNNSLSGGLPNCWAQWESLVVLNLENNRFSGQIPISFGSLRS 676

Query: 609  LQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKF 668
            +Q+L L NN LTGELP  F N + L  +DL KN LSG+IP WIG  L NL VL+L SN+F
Sbjct: 677  IQTLHLRNNNLTGELPLSFKNCTSLRFIDLAKNRLSGKIPEWIGGSLPNLTVLNLGSNRF 736

Query: 669  NGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNY-YTSLAYD 727
            +G I  +LC L N+QILDLSSNN+ G++P+C   FTAMT +KGS L ++ NY +   +  
Sbjct: 737  SGGICPELCQLKNIQILDLSSNNMLGVVPRCVGGFTAMT-KKGS-LVIVHNYSFADFSSK 794

Query: 728  -SLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNL 786
             SL     Y D+A++ WKG ++EY+STLGLVK +D SSNKL GE+PEE++DL  L++LNL
Sbjct: 795  YSLIRNAFYVDRALVKWKGREFEYKSTLGLVKSIDFSSNKLSGEIPEEVIDLVELVSLNL 854

Query: 787  SRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSG 846
            SRN LT  I  +IGQLKSL+ LDLS+NQ FG IP+SL ++S LSV+DLS NNLSGKIP G
Sbjct: 855  SRNNLTRLIPARIGQLKSLEVLDLSQNQLFGEIPASLVEISDLSVLDLSDNNLSGKIPQG 914

Query: 847  TQLQSFSTSMYAGN-ELCGLPLPNKCPDEDSAPGPGKDDANTSEDEDQFITLG----FYV 901
            TQLQSF+   Y GN  LCGLPL  KC ++       K D+ T   ED+    G    FYV
Sbjct: 915  TQLQSFNIDSYKGNPALCGLPLLKKCFEDKI-----KQDSPTHNIEDKIQQDGNDMWFYV 969

Query: 902  SLILGFFVGFWGFCGTLLVKSSWRHRYYNFLTGVKNWFYVTAVVNIAKLQRRFR 955
            S+ LGF VGFWG CGTLL+ +SWR+ Y+ FL  +K+W YV   +N+A+LQR  +
Sbjct: 970  SVALGFIVGFWGVCGTLLLNNSWRYAYFQFLNKIKDWLYVIIAINMARLQRSLQ 1023

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490576|ref|XP_003634117.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/998 (47%), Positives = 615/998 (61%), Gaps = 99/998 (9%)

Query: 12  LALFSVILFDQLEPRAADSSNIIRCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCC 71
           LA F   L      R  D+   + C + ER+ALL FKQG+VD+ G+LSSWG  ++KRDCC
Sbjct: 19  LACFEACL------RVGDAK--VGCRERERQALLHFKQGVVDDDGVLSSWGNGEDKRDCC 70

Query: 72  GWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIP 131
            WRGV C+N+TGHV +LDLH      +  L G I  SL  LQHL +L+LS N+F   + P
Sbjct: 71  KWRGVKCNNQTGHVIRLDLH------AQSLGGKIGPSLAELQHLKHLNLSSNDF--EAFP 122

Query: 132 EFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFN-SLISGENLEWLSHLSSLI 190
            F G L                 P QLGNLS LQ LD+G+N   ++  NL+WL HL  L 
Sbjct: 123 NFTGIL-----------------PTQLGNLSNLQSLDLGYNYGDMTCGNLDWLCHLPFLT 165

Query: 191 YLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDL-YLNSSTSLEVIVILG 249
           +LDLS+ NLSK  +W Q ++K+ SL  LYLI   LP  IP+  + ++NSSTSL V+ +  
Sbjct: 166 HLDLSWVNLSKAIHWPQAINKMPSLTELYLIDTQLPSIIPTISISHINSSTSLAVLHLPS 225

Query: 250 NNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFR-EIPKS 308
           N LT SIYPWLFN SS+LV L +L  N L GS P+AFG+M +L  L L+SN+ R  IP +
Sbjct: 226 NGLTSSIYPWLFNFSSSLVHL-DLSWNDLNGSTPDAFGNMTTLAYLDLSSNELRGSIPDA 284

Query: 309 LGNMCNLKSLTLSYNTLRG---------------DLS------EIIQNLSD--------- 338
            GNM  L  L LS+N LRG               DLS      EI ++L+D         
Sbjct: 285 FGNMTTLAYLDLSWNKLRGSIPDAFGNMTSLAYLDLSLNELEGEIPKSLTDLCNLQELWL 344

Query: 339 --------------GCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINK 384
                          C   +L  L L  N++ GS PN  GFS L+ L +  N+L GT+++
Sbjct: 345 SQNNLTGLKEKDYLACPNNTLEVLDLSYNQLKGSFPNLSGFSQLRELFLDFNQLKGTLHE 404

Query: 385 SVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQV 444
           S+GQL +L+ L + +NSLRG +S   L  LSNL+ L L+ NSLT   S + +P F+ S +
Sbjct: 405 SIGQLAQLQLLSIPSNSLRGTVSANHLFGLSNLSYLDLSFNSLTFNISLEQVPQFRASSI 464

Query: 445 NLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKL 504
            L SCK+GPRFP WL+ Q  +  LDIS SGISD +PNWFWN T +L++ N+SNN I G L
Sbjct: 465 LLASCKLGPRFPNWLQTQEVLSELDISASGISDVIPNWFWNLTSDLNWLNISNNHISGTL 524

Query: 505 PNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHK---L 561
           PNL +R +    G+D+SSN  EG IPQ   NA +L+LSKN FSGSIS  C         L
Sbjct: 525 PNLQARSY---LGMDMSSNCLEGSIPQSVFNARWLDLSKNLFSGSISLSCGTPNQPSWGL 581

Query: 562 DYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTG 621
            ++DLSNN LSG LP+CW Q+  L +L+LANN+F GKI +SIG L  +Q+L L NN  TG
Sbjct: 582 SHLDLSNNRLSGELPNCWEQWKDLIVLDLANNNFSGKIKNSIGLLHQMQTLHLCNNSFTG 641

Query: 622 ELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLAN 681
            LPS   N   L L+DLGKN LSG+I  W+G  L +L+VL+L+SN+FNGSIP  LC L  
Sbjct: 642 ALPSSLKNCRALRLIDLGKNKLSGKITAWMGGSLSDLIVLNLRSNEFNGSIPSSLCQLKQ 701

Query: 682 VQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVL 741
           +Q+LDLSSNN+SG IPKC  N TAM  +    L+  + Y  S+ Y        Y D  ++
Sbjct: 702 IQMLDLSSNNLSGKIPKCLKNLTAMAQKGSPVLSYETIYNLSIPY-------HYVDSTLV 754

Query: 742 TWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQ 801
            WKG + EY+ TL  +K +D S N+L GE+P E+ DL  L++LNLSRN L G I   IGQ
Sbjct: 755 QWKGKEQEYKKTLRFIKSIDFSRNQLIGEIPIEVTDLVELVSLNLSRNNLIGSIPTTIGQ 814

Query: 802 LKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNE 861
           LK LD LDLS+NQ  G IP +LSQ++ LSV+DLS N LSGKIP GTQLQSF  S Y GN 
Sbjct: 815 LKLLDVLDLSQNQLNGRIPDTLSQIADLSVLDLSNNTLSGKIPLGTQLQSFDASTYEGNP 874

Query: 862 -LCGLPLPNKCPDEDSAPGPGKDDANTSEDE---DQFITLGFYVSLILGFFVGFWGFCGT 917
            LCG PL  +CP ED   G       +S+ E   D    + FY +++LGF +GFWG CGT
Sbjct: 875 GLCGPPLLIRCP-EDELGGVSFTSGLSSKKEDIQDDANNIWFYGNIVLGFIIGFWGVCGT 933

Query: 918 LLVKSSWRHRYYNFLTGVKNWFYVTAVVNIAKLQRRFR 955
           LL  SSWR+ Y+  L+ +K+W Y+T +VN+ +++R  +
Sbjct: 934 LLFNSSWRYAYFQLLSKIKDWLYMTTIVNMNRIRRSLQ 971

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462661|ref|XP_002266475.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/977 (47%), Positives = 606/977 (62%), Gaps = 89/977 (9%)

Query: 26  RAADSSNIIRCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHV 85
           R  D+   + CI+ ER+ALL FKQG+VD+ G+LSSWG  ++KRDCC WRGV C+N+TGHV
Sbjct: 28  RVGDAK--VGCIERERQALLHFKQGVVDDYGMLSSWGNGEDKRDCCKWRGVECNNQTGHV 85

Query: 86  YKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGL 145
             LDL          L G I  SL  LQHL +L+LS N+F                    
Sbjct: 86  IMLDL------SGGYLGGKIGPSLAKLQHLKHLNLSWNDF-------------------- 119

Query: 146 SNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNW 205
              E  G +P QLGNLS LQ LD+ +N  ++  NL+WLSHL  L +LDLSF NLSK  +W
Sbjct: 120 ---EVTGILPTQLGNLSNLQSLDLRYNRDMTCGNLDWLSHLHLLTHLDLSFVNLSKAIHW 176

Query: 206 MQVLSKLDSLKALYLISCDLPPTIPSSDL-YLNSSTSLEVIVILGNNLTDSIYPWLFNVS 264
            Q + K+ +L  LYL +  LPP  P+  + ++NSSTSL V+ +  N+LT SIYPWL N S
Sbjct: 177 PQAVKKMPALTELYLSNTQLPPIDPTISISHINSSTSLAVLELFENDLTSSIYPWLLNFS 236

Query: 265 SNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFR-EIPKSL-------------- 309
           S LV L +L +N L GSIP+AFG+M +L  L L+ NQ   EIPKS               
Sbjct: 237 SCLVHL-DLSNNHLNGSIPDAFGNMTTLAYLDLSFNQLEGEIPKSFSINLVTLDLSWNHL 295

Query: 310 --------GNMCNLKSLTLSYNTLRGDLSEIIQNLSD--------------------GCT 341
                   GNM  L  L  S N L G++ + ++ L D                     C+
Sbjct: 296 HGSIPDAFGNMATLAYLHFSGNQLEGEIPKSLRGLCDLQILSLSQNNLTGLLEKDFLACS 355

Query: 342 KTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNS 401
             +L  L L  N+  GS P+  GFS L+ L +  N+LNGT+ +S+GQL +L+ L L +NS
Sbjct: 356 NNTLEVLDLSHNQFKGSFPDLSGFSQLRELHLEFNQLNGTLPESIGQLAQLQVLSLRSNS 415

Query: 402 LRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRN 461
           LRG +S   L  LS L  L L+ NSLT+  S + +P FQ  ++ L SCK+GP FP WLR 
Sbjct: 416 LRGTVSANHLFGLSKLWDLDLSFNSLTVNISLEQVPQFQAIEIKLASCKLGPHFPNWLRT 475

Query: 462 QNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDIS 521
           Q  +  LDIS SGI++ +PNWFW  T +LS+FN+SNN I G LPNL+S  H    G+DIS
Sbjct: 476 QKHLSMLDISASGIANVLPNWFWKFTSHLSWFNISNNHISGTLPNLTS--HLSYLGMDIS 533

Query: 522 SNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHK---LDYIDLSNNLLSGRLPDC 578
           SN  EG IPQ   NA +L+LSKN FSGSIS  C  T      L ++DLSNN LSG LP C
Sbjct: 534 SNCLEGSIPQSLFNAQWLDLSKNMFSGSISLSCGTTNQSSWGLSHLDLSNNRLSGELPKC 593

Query: 579 WSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638
             Q+  L +LNLANN+F GKI +SIG   ++Q+L L NN LTG LP    N   L L+DL
Sbjct: 594 REQWKDLIVLNLANNNFSGKIKNSIGLSYHMQTLHLRNNSLTGALPWSLKNCRDLRLLDL 653

Query: 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPK 698
           GKN LSG+IP WIG  L NL+V++L+SN+FNGSIPL LC L  + +LDLSSNN+SG IPK
Sbjct: 654 GKNKLSGKIPGWIGGSLSNLIVVNLRSNEFNGSIPLNLCQLKKIHMLDLSSNNLSGTIPK 713

Query: 699 CFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVK 758
           C NN + M      N +L+  Y   L +     + SY+D  ++ WKG + EY  TLGLVK
Sbjct: 714 CLNNLSGMAQ----NGSLVITYEEDLLF---LMSLSYYDNTLVQWKGKELEYNKTLGLVK 766

Query: 759 ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGS 818
            +D S+NKL GE+P E+ DL  L++LNLSRN L G I   IGQLKSLD LDLSRN+  G 
Sbjct: 767 SIDFSNNKLIGEIPTEVTDLVELVSLNLSRNYLIGPIPLMIGQLKSLDSLDLSRNRLHGG 826

Query: 819 IPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNE-LCGLPLPNKCPDEDSA 877
           IP SLSQ++RLSV+DLS N LSGKIPSGTQLQSF+ S Y GN  LCG PL  KC ++++ 
Sbjct: 827 IPISLSQIARLSVLDLSDNILSGKIPSGTQLQSFNASTYDGNPGLCGPPLLKKCQEDENR 886

Query: 878 PGPGKDDANTSEDEDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHRYYNFLTGVKN 937
                  +N  + +D    + FY +++LGF +GFWG CGTLL+ SSWR+ Y+ FL+ +K+
Sbjct: 887 EVSFTGLSNEEDIQDDANNIWFYGNIVLGFIIGFWGVCGTLLLNSSWRYAYFQFLSKIKD 946

Query: 938 WFYVTAVVNIAKLQRRF 954
           W YVT  + ++ L+ + 
Sbjct: 947 WLYVTTTICMSDLELKL 963

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147807651|emb|CAN64389.1| hypothetical protein VITISV_018647 [Vitis vinifera]

 Score =  787 bits (2032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/1009 (46%), Positives = 610/1009 (60%), Gaps = 111/1009 (11%)

Query: 11  YLALFSVILFDQLEPRAADSSNIIRCIDEEREALLAFKQGLVDESGILSSWGREDEKRDC 70
           +++LF ++L  +   R  D+   + CI+ ER+ALL FKQG+VD+ G+LSSWG  ++KRDC
Sbjct: 9   FISLFLLLLCFEACLRVGDAK--VGCIERERQALLHFKQGVVDDYGMLSSWGNGEDKRDC 66

Query: 71  CGWRGVNCSNRTGHVYKLDLHILQVFPSPC-------LKGTISSSLLILQHLTYLDLSGN 123
           C WRGV C+N+TGHV  LDLH     P P        L G I  SL  LQHL +L+LS N
Sbjct: 67  CKWRGVECNNQTGHVIMLDLHT----PPPVGIGYFQSLGGKIGPSLAELQHLKHLNLSWN 122

Query: 124 NFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFN-SLISGENLEW 182
                                    +F G +P QLGNLS LQ LD+G N   +S  NL+W
Sbjct: 123 -------------------------QFEGILPTQLGNLSNLQSLDLGHNYGDMSCGNLDW 157

Query: 183 LSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDL-YLNSSTS 241
           LS L  L +LDLS  NLSK  +W Q ++K+ SL  LYL    LPP IP+  + ++NSSTS
Sbjct: 158 LSDLPLLTHLDLSGVNLSKAIHWPQAINKMPSLTELYLSDTQLPPIIPTISISHINSSTS 217

Query: 242 LEVIVILGNNLTDSIYPWLFNVSSNLVEL------------------------------- 270
           L V+ +  N LT SIYPWLF  +S LV L                               
Sbjct: 218 LAVLDLSRNGLTSSIYPWLFCFNSVLVHLDLCMNDLNCSILDAFGNMTTLAYLDLSLNEL 277

Query: 271 ----------------INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFR-EIPKSLGNMC 313
                           ++L SN L GSIP+AFG+M SL  L L+SNQ   EIPKSL ++C
Sbjct: 278 RGSIPDAFGNMTTLAHLDLHSNHLNGSIPDAFGNMTSLAYLDLSSNQLEGEIPKSLTDLC 337

Query: 314 NLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSI 373
           NL+ L LS N L G    + +     C+  +L  L L  N+  GS P+  GFS L+ LS+
Sbjct: 338 NLQELWLSRNNLTG----LKEKDFLACSNHTLEVLGLSYNQFKGSFPDLSGFSQLRELSL 393

Query: 374 ANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSH 433
             N+LNGT+ +S+GQL +L+ L + +NSLRG +S   L  LSNL  L L+ NSLT   S 
Sbjct: 394 GFNQLNGTLPESIGQLAQLQVLSIPSNSLRGTVSANHLFGLSNLINLDLSFNSLTFNISL 453

Query: 434 DWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFF 493
           + +P F+ S++ L SCK+GPRFP WL+ Q  +  LDIS SGISD +PNWFWN T +  + 
Sbjct: 454 EQVPQFRASRIMLASCKLGPRFPNWLQTQEVLRELDISASGISDAIPNWFWNLTSDFKWL 513

Query: 494 NLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFL 553
           N+SNN I G LPNL +   P    +D+SSN  EG IPQ   NA +L+LSKN FSGSIS  
Sbjct: 514 NISNNHISGTLPNLQAT--PLM--LDMSSNCLEGSIPQSVFNAGWLDLSKNLFSGSISLS 569

Query: 554 CSITGHK---LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQ 610
           C  T      L ++DLSNN LSG L +CW ++  L +LNLANN+F GKI DSIG L  +Q
Sbjct: 570 CGTTNQPSWGLSHLDLSNNRLSGELSNCWERWKYLFVLNLANNNFSGKIKDSIGLLDQMQ 629

Query: 611 SLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNG 670
           +L L NN  TG LPS   N   L L+DLGKN LSG+I  W+G  L +L+VL+L+SN+FNG
Sbjct: 630 TLHLRNNSFTGALPSSLKNCRALRLIDLGKNKLSGKITAWMGGSLSDLIVLNLRSNEFNG 689

Query: 671 SIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLK 730
           SIP  LC L  +Q+LDLSSNN+SG IPKC  N TAM  ++   L     +Y +  YD+  
Sbjct: 690 SIPSSLCQLKQIQMLDLSSNNLSGKIPKCLKNLTAMAQKRSQVL-----FYDTW-YDA-S 742

Query: 731 TTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNT 790
               Y D  ++ WKG + EY+ TLGL+K +D SSNKL GE+P E+ DL  L++LNLS N 
Sbjct: 743 NPHYYVDSTLVQWKGKEQEYKKTLGLIKSIDFSSNKLIGEIPIEVTDLVELVSLNLSSNN 802

Query: 791 LTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQ 850
           L G I   IGQLK LD LDLS+NQ  G IP +LSQ++ LSV+DLS N L GKIP GTQLQ
Sbjct: 803 LIGSIPTTIGQLKLLDVLDLSQNQLNGRIPDTLSQIADLSVLDLSNNTLLGKIPLGTQLQ 862

Query: 851 SFSTSMYAGNE-LCGLPLPNKCPDEDSAPGPGKDDANTSEDE---DQFITLGFYVSLILG 906
           SF  S Y GN  LCG PL  +CP ED   G       +S+ E   D    + FY +++LG
Sbjct: 863 SFDASTYEGNPGLCGPPLLKRCP-EDELGGVSFISGLSSKKEDIQDDANNIWFYGNIVLG 921

Query: 907 FFVGFWGFCGTLLVKSSWRHRYYNFLTGVKNWFYVTAVVNIAKLQRRFR 955
           F +GFWG CGTLL  SSWR+ Y+  L+ +K+W YVT +VN+ +++R  +
Sbjct: 922 FIIGFWGVCGTLLFNSSWRYAYFQLLSKIKDWLYVTTIVNMNRIRRSLQ 970

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490560|ref|XP_002266431.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/1001 (46%), Positives = 603/1001 (60%), Gaps = 104/1001 (10%)

Query: 34   IRCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHIL 93
            + C++ ER+ALL FKQG+VD  G LSSWG  + + DCC WRGV C N+TGHV  LDLH  
Sbjct: 34   VGCMERERQALLHFKQGVVDHFGTLSSWGNGEGETDCCKWRGVECDNQTGHVIMLDLHGT 93

Query: 94   Q---VFPSPCLKGTISS---SLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSN 147
                +     L G IS    SL  LQHL +L+LS N F             ++S++ LS 
Sbjct: 94   GHDGMGDFQILGGRISQLGPSLSELQHLKHLNLSFNLF-------------EVSHIILSF 140

Query: 148  TEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQ 207
              F G +P QLGNLS LQ LD+  N  +S ENLEWLS+L SL +LDLS  +LSK  +W Q
Sbjct: 141  PYFTGVLPTQLGNLSNLQSLDLSDNFEMSCENLEWLSYLPSLTHLDLSGVDLSKAIHWPQ 200

Query: 208  VLSKLDS-LKALYLISCDLPPTIPSSDL-YLNSSTSLEV--------------------- 244
             ++K+ S L  LYL    LP  IP+  + + NSSTSL V                     
Sbjct: 201  AINKMSSSLTELYLSFTKLPWIIPTISISHTNSSTSLAVLDLSLNGLTSSINPWLFYFSS 260

Query: 245  ----IVILGNNLTDSIYPWLFNVSSNLVEL---------------------INLGSNQLQ 279
                + + GN+L  SI   L N++ NL  L                     ++L  NQL 
Sbjct: 261  SLVHLDLFGNDLNGSILDALGNMT-NLAYLDLSLNQLEGEIPKSFSISLAHLDLSWNQLH 319

Query: 280  GSIPEAFGHMPSLNTLFLASNQFR-EIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSD 338
            GSIP+AFG+M +L  L L+SN     IP +LGNM  L  L LS N L G++ + +++L +
Sbjct: 320  GSIPDAFGNMTTLAYLDLSSNHLNGSIPDALGNMTTLAHLYLSANQLEGEIPKSLRDLCN 379

Query: 339  --------------------GCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRL 378
                                 C+  +L  L+L  N+  GS P+  GFS L+ L +  N+L
Sbjct: 380  LQILLLSQNNLSGLLEKDFLACSNNTLESLYLSENQFKGSFPDLSGFSQLRELYLGFNQL 439

Query: 379  NGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPP 438
            NGT+ +S+GQL +L+ L + +NSL+G +S   L  LS L  L L+ N LT+  S + +P 
Sbjct: 440  NGTLPESIGQLAQLQGLNIRSNSLQGTVSANHLFGLSKLWDLDLSFNYLTVNISLEQVPQ 499

Query: 439  FQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNN 498
            FQ  ++ L SCK+GPRFP WL+ Q ++  LDIS SGISD +PNWFWN T NL + N+SNN
Sbjct: 500  FQAQEIKLASCKLGPRFPNWLQTQKRLQELDISASGISDVIPNWFWNLTSNLVWLNISNN 559

Query: 499  QIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITG 558
             I G LPNL +       G+D+SSN  +G IPQ   N  +L+LSKN FSGS+S  C  T 
Sbjct: 560  HISGTLPNLEAT---PSLGMDMSSNCLKGSIPQSVFNGQWLDLSKNMFSGSVSLSCGTTN 616

Query: 559  HK---LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLY 615
                 L ++DLSNN LSG LP CW Q+  L +LNL NN+F G I +SIG L  +Q+L L 
Sbjct: 617  QSSWGLLHVDLSNNQLSGELPKCWEQWKYLIVLNLTNNNFSGTIKNSIGMLHQMQTLHLR 676

Query: 616  NNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQ 675
            NN LTG LP    N   L L+DLGKN LSG++P WIG  L +L+V++L+SN+FNGSIPL 
Sbjct: 677  NNSLTGALPLSLKNCRDLRLIDLGKNKLSGKMPAWIGGNLSDLIVVNLRSNEFNGSIPLN 736

Query: 676  LCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSL-AYDSLKTTKS 734
            LC L  VQ+LDLSSNN+SGIIPKC NN TAM    G N +L+  Y   L  +DS   + S
Sbjct: 737  LCQLKKVQMLDLSSNNLSGIIPKCLNNLTAM----GQNGSLVIAYEERLFVFDS---SIS 789

Query: 735  YFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQ 794
            Y D  V+ WKG + EY+ TL LVK +D S+NKL GE+P E+ DL  L++LNLS+N L G 
Sbjct: 790  YIDNTVVQWKGKELEYKKTLRLVKSIDFSNNKLNGEIPIEVTDLVELLSLNLSKNNLIGS 849

Query: 795  ITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFST 854
            I   IGQLKSLDFLDLS+NQ  G IP SLSQ++ LSV+DLS N LSGKIPSGTQL SF+ 
Sbjct: 850  IPLMIGQLKSLDFLDLSQNQLHGGIPVSLSQIAGLSVLDLSDNILSGKIPSGTQLHSFNA 909

Query: 855  SMYAGNE-LCGLPLPNKCPDEDSAPGPGKDDANTSEDEDQFITLGFYVSLILGFFVGFWG 913
            S Y GN  LCG PL  KC ++++         N  + +D    + FY +++LGF +GFWG
Sbjct: 910  STYDGNPGLCGPPLLKKCQEDETKEVSFTSLINEKDIQDDTNNIWFYGNIVLGFIIGFWG 969

Query: 914  FCGTLLVKSSWRHRYYNFLTGVKNWFYVTAVVNIAKLQRRF 954
             CGTLL+  SWR+ Y+  L  +K+W ++T   NI +L+R F
Sbjct: 970  VCGTLLLNRSWRYSYFQTLNKIKDWLHMTTTTNINRLRRSF 1010

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116866|ref|XP_002331833.1| predicted protein [Populus trichocarpa] gi|222875071|gb|EEF12202.1| predicted protein [Populus trichocarpa]

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/977 (46%), Positives = 600/977 (61%), Gaps = 92/977 (9%)

Query: 36  CIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQV 95
           CI+ ER+ALL FK+ L+D+ G+LS+WG E+EKRDCC WRGV CSNRTGHV  LDLH    
Sbjct: 40  CIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVGCSNRTGHVTHLDLHRENY 99

Query: 96  FPSPC-LKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPI 154
                 L G IS+SLL LQHL+YL+L+G+ F GSS P FIGSL KL YL LS+    G +
Sbjct: 100 NGYYYQLSGNISNSLLELQHLSYLNLNGSRFGGSSFPYFIGSLKKLRYLDLSSIHVDGTL 159

Query: 155 PLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDS 214
             Q  NLSRLQ LD+ +   ++  +L++LS+  SL +LDL  ++LS+  +W+QVL++L  
Sbjct: 160 SNQFWNLSRLQYLDLSYIQGVNFTSLDFLSNFFSLQHLDLRGNDLSETIDWLQVLNRLPR 219

Query: 215 LKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLG 274
           L  L L SC L      S   +NSS SL ++    N+L+ SI+ WL N  ++L++L +L 
Sbjct: 220 LHELLLSSCSLSIIGSPSLSLVNSSESLAIVDFSFNDLSSSIFHWLANFGNSLIDL-DLS 278

Query: 275 SNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQ 334
            N LQGSIP+ F +M SL TL L+SNQ +    S G MC+L  L +S N L G+LS++  
Sbjct: 279 HNNLQGSIPDVFTNMTSLRTLDLSSNQLQGDLSSFGQMCSLNKLCISENNLIGELSQLF- 337

Query: 335 NLSDGCTKTSLAWLFLDSNEITGSLPNFGGF----------------------------- 365
               GC + SL  L LD N++ GSLP+   F                             
Sbjct: 338 ----GCVENSLEILQLDRNQLYGSLPDITRFTSMRELNLSGNQLNGSLPERFSQRSELVL 393

Query: 366 ------------------SSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVIS 407
                             SSL+ L I+NNRL+G +++S+G L +LE L +  NSL+GV+S
Sbjct: 394 LYLNDNQLTGSLTDVAMLSSLRELGISNNRLDGNVSESIGSLFQLEKLHVGGNSLQGVMS 453

Query: 408 EAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILS 467
           EA  SNLS LT+L L DNSL L+F  +W P FQL ++ L SC +GP FP+WLRNQ   + 
Sbjct: 454 EAHFSNLSKLTVLDLTDNSLALKFESNWAPTFQLDRIFLSSCDLGPPFPQWLRNQTNFME 513

Query: 468 LDISNSGISDTVPNWFWN-QTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFE 526
           LDIS S ISDT+PNWFWN     L   +LS+N++ G LP+ SS++   R  ID+S NQFE
Sbjct: 514 LDISGSRISDTIPNWFWNLSNSKLELLDLSHNKMSGLLPDFSSKYANLR-SIDLSFNQFE 572

Query: 527 GPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLA 586
           GP                      S  C+I    L  +DLSNNLL G +PDC   F SL+
Sbjct: 573 GPA---------------------SCPCNIGSGILKVLDLSNNLLRGWIPDCLMNFTSLS 611

Query: 587 ILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGE 646
           +LNLA+N+F GKI  SIG +  L++LSL+NN   GELP    N S L  +DL  N L GE
Sbjct: 612 VLNLASNNFSGKILSSIGSMVYLKTLSLHNNSFVGELPLSLRNCSSLAFLDLSSNKLRGE 671

Query: 647 IPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAM 706
           IP WIGE + +L VLSL+SN FNGSI   LCHL+N+ ILDLS NNI+GIIPKC NN T+M
Sbjct: 672 IPGWIGESMPSLKVLSLRSNGFNGSILPNLCHLSNILILDLSLNNITGIIPKCLNNLTSM 731

Query: 707 THEKGSNLTLISN-----YYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILD 761
             +  S  +L +N     Y+TS +YD      +Y +K  + WKG +  Y+STLGL++I++
Sbjct: 732 VQKTESEYSLANNAVLSPYFTSDSYD------AYQNKMRVGWKGREDGYESTLGLLRIIN 785

Query: 762 LSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPS 821
           L+ NKL GE+PEEI  L  L+ALNLS NTLTG+I  KIGQLK L+ LDLS NQ  G IP 
Sbjct: 786 LARNKLIGEIPEEITGLLLLLALNLSGNTLTGEIPQKIGQLKQLESLDLSGNQLSGVIPI 845

Query: 822 SLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCGLPLPNKCPDEDSAPGP 880
           +++ L+ L+ ++LS N+LSG+IPS TQLQ F+ S + GN  LCG PL  KCP +++   P
Sbjct: 846 TMADLNFLAFLNLSNNHLSGRIPSSTQLQGFNASQFTGNLALCGQPLLQKCPGDETNQSP 905

Query: 881 GKDDANTSED--EDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHRYYNFLTGVKNW 938
             +D N  ++   D+F+   F +S+ +GF V FWG  G LL+K SWRH Y+ FL    +W
Sbjct: 906 PANDDNRGKEVVADEFMKW-FCISMGIGFSVFFWGVSGALLLKRSWRHAYFRFLDESWDW 964

Query: 939 FYVTAVVNIAKLQRRFR 955
            YV   V     +   R
Sbjct: 965 LYVKVAVCRHDFEENLR 981

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115848|ref|XP_002332072.1| predicted protein [Populus trichocarpa] gi|222831958|gb|EEE70435.1| predicted protein [Populus trichocarpa]

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/928 (45%), Positives = 575/928 (61%), Gaps = 52/928 (5%)

Query: 36  CIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQV 95
           C++ E++ALL  K  LVDE+  LSSWG  D   DCC W GV C+NRTGHVY L L+  Q+
Sbjct: 2   CMEREKQALLKLKDDLVDENDQLSSWGTSD---DCCNWTGVRCNNRTGHVYSLQLN-QQL 57

Query: 96  FPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIP 155
             S   KG ISS LL L+HL YLD+S      +SIP+FIGSL  L +L +S  +  G IP
Sbjct: 58  DDSMQFKGDISSPLLELKHLAYLDMS--EVRATSIPQFIGSLKHLMHLNMSFCDLTGTIP 115

Query: 156 LQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSL 215
            QLGNL+RL  LD+ +N+    E+L WLS L +L +LDLS ++LS  ++W Q ++ L SL
Sbjct: 116 HQLGNLTRLVFLDLSYNNFNKVESLSWLSRLPALKHLDLSTADLSGTTDWFQAINSLPSL 175

Query: 216 KALYLISCDLPPTIPSSDLYLN-SSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLG 274
             LYL  C L   I       N S  SL  I +  N L  SI+PWL N +++LV L  L 
Sbjct: 176 HNLYLSGCGLSSVISPPLFRSNYSPASLADIDLSQNTLKSSIFPWLLNFNNSLVHL-KLY 234

Query: 275 SNQLQGSIPEAFGHMPSLNTLFLASNQFR-EIPKSLGNMCNLKSLTLSYNTLRGDLSEII 333
            N+ QG IP+A G M +L +L L+ N F  EIP++L N+  L+SL LS+N+L        
Sbjct: 235 DNEFQGKIPKALGAMINLESLLLSGNHFEGEIPRALANLGRLESLDLSWNSL-------- 286

Query: 334 QNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLE 393
                                  G +P+    S + RL +++N+LNG+  +++  L  L 
Sbjct: 287 ----------------------VGEVPDMKNLSFITRLFLSDNKLNGSWIENIRLLSDLA 324

Query: 394 SLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGP 453
            L +  N + G ISE    NL+ LT L ++ N+     S +W PPFQL  + + SCK+GP
Sbjct: 325 YLDISYNFMNGTISEINFLNLTELTHLDISSNAFVFNLSLNWTPPFQLDTLIMSSCKLGP 384

Query: 454 RFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHP 513
            FP+WLR Q +I  LDISN+GI D + + F    + L++ N+S+NQI G+   L S    
Sbjct: 385 SFPQWLRTQRRISELDISNAGIEDDISSRFGKLPFKLNYLNISHNQITGEAHKLPSVVGD 444

Query: 514 YRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSG 573
               +D+SSN   G +P LPLNA+ LNLSKN FSG+IS LCSI   +L Y+DLS+N LSG
Sbjct: 445 -SATVDMSSNFLHGSLP-LPLNATILNLSKNLFSGTISNLCSIACERLFYLDLSDNCLSG 502

Query: 574 RLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQL 633
            +PDCW     L ILNLA N+F G+IP S+G L  +Q+L+L NN  +GELP    N +QL
Sbjct: 503 EIPDCWMTCKELNILNLAGNNFSGRIPASLGSLVFIQTLNLRNNSFSGELPPSLANCTQL 562

Query: 634 TLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS 693
            ++DLG+N LSG+IP+WIGE L +LVVL L+SN  +G++PL LCHLA++QILDLS NNIS
Sbjct: 563 EILDLGENRLSGKIPSWIGENLSSLVVLRLRSNYLDGTLPLVLCHLAHLQILDLSHNNIS 622

Query: 694 GIIPKCFNNFTAMTHEKGSNLTLI--SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQ 751
             IP CF+NF+AM+ + GS    I  SN +T   +  L     Y D   +  KG + EY 
Sbjct: 623 DDIPHCFSNFSAMS-KNGSTYEFIGHSNNHTLPFFIIL-----YHDSVRVVLKGMELEYG 676

Query: 752 STLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLS 811
            TL  VKI+DLSSN L GE+P+ I  L GL++L+LS N LTG I P+IG ++SL+ LDLS
Sbjct: 677 KTLEQVKIMDLSSNNLSGEIPDGIAKLEGLVSLHLSNNRLTGIIPPRIGLMRSLESLDLS 736

Query: 812 RNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCGLPLPNK 870
            NQ  G +P+ L  L+ LS +++SYNNLSGKIP  TQLQ+F  + +  N ELCG PL N+
Sbjct: 737 TNQLSGGLPNGLRDLNFLSSLNVSYNNLSGKIPLSTQLQTFDNNSFVANAELCGKPLSNE 796

Query: 871 CPDEDSA-PGPGKDDANTS-EDEDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHRY 928
           C  E +  P   +   N   +DED FI+  FY+S+  GF  GFW  CGTLL+   WRH +
Sbjct: 797 CAAEQAHDPSISQGSKNVDIQDEDGFISRRFYLSMGTGFATGFWAVCGTLLLYRPWRHAF 856

Query: 929 YNFLTGVKNWFYVTAVVNIAKLQRRFRN 956
           +  +  +++W +VT V+ +A+LQRR RN
Sbjct: 857 FRLMNHIEDWLHVTTVLIMARLQRRLRN 884

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	956
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.769	0.813	0.332	1.4e-87
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.822	0.799	0.307	8.2e-83
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.915	0.914	0.298	2.5e-81
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.832	0.781	0.296	7.1e-77
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.856	0.916	0.308	1.1e-76
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.721	0.853	0.316	3.5e-75
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.716	0.844	0.306	9.3e-75
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.773	0.830	0.290	1.9e-74
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.837	0.641	0.308	3.6e-73
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.834	0.817	0.290	4.6e-73

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 262/789 (33%), Positives = 399/789 (50%)

Query:   115 LTYLDLSGNNFSGSSIPEFIXXXXXXXXXXXXNTEF--AGPIPLQLGNL-------SRLQ 165
             L YL+LS ++FSG  IP  +               F  +G + L+  NL       S L+
Sbjct:   139 LRYLNLSSSSFSGE-IPTSLGNLSKLESLDLYAESFGDSGTLSLRASNLRWLSSLSSSLK 197

Query:   166 VLDIGFNSLISGENLEWLSHLSSLIYL-DLSFSNLSKFSNWMQVLSKLDSLKALYLISCD 224
              L++G+ +L SG    WL   S +  L +L   N S+  N    LS    LK L ++  D
Sbjct:   198 YLNMGYVNL-SGAGETWLQDFSRISALKELHLFN-SELKNLPPTLSSSADLKLLEVL--D 253

Query:   225 LPPTIPSSDL--YLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSN-QLQGS 281
             L     +S +  +L   T+L  + +  + L  SI P  F  +  L+E ++L +N  LQG 
Sbjct:   254 LSENSLNSPIPNWLFGLTNLRKLFLRWDFLQGSI-PTGFK-NLKLLETLDLSNNLALQGE 311

Query:   282 IPEAFGHMPSLNTLFLASNQFR-EIPKSLG----NMCN-LKSLTLSYNTLRGDLSEIIQN 335
             IP   G +P L  L L++N+   +I   L     N  N L  L LS N L G L E + +
Sbjct:   312 IPSVLGDLPQLKFLDLSANELNGQIHGFLDAFSRNKGNSLVFLDLSSNKLAGTLPESLGS 371

Query:   336 LSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLES 394
             L +      L  L L SN  TGS+P+  G  +SLK+L ++NN +NGTI +S+GQL +L  
Sbjct:   372 LRN------LQTLDLSSNSFTGSVPSSIGNMASLKKLDLSNNAMNGTIAESLGQLAELVD 425

Query:   395 LFLHNNSLRGVISEAFLSNLSNLTILYLADN---SLTLEFSHDWIPPFQLSQVNLGSCKI 451
             L L  N+  GV+ ++   NL +L  + L      SL  +    WIPPF+L  + + +C+I
Sbjct:   426 LNLMANTWGGVLQKSHFVNLRSLKSIRLTTEPYRSLVFKLPSTWIPPFRLELIQIENCRI 485

Query:   452 GPRFPKWLRNQNQILSLDISNSGISDTVPN-WFWNQTYNLSFFNLSNNQIKGKLPNLSSR 510
             G  FP WL+ Q ++  + + N+GI DT+P+ WF   +  +++  L+NN+IKG+LP   + 
Sbjct:   486 G-LFPMWLQVQTKLNFVTLRNTGIEDTIPDSWFSGISSKVTYLILANNRIKGRLPQKLA- 543

Query:   511 FHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNL 570
             F P    ID+SSN FEG  P    NA+ L L +N FSGS+     +   +++ I L +N 
Sbjct:   544 F-PKLNTIDLSSNNFEGTFPLWSTNATELRLYENNFSGSLPQNIDVLMPRMEKIYLFSNS 602

Query:   571 LSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNG 630
              +G +P    +   L IL+L  N F G  P        L  + +  N L+GE+P      
Sbjct:   603 FTGNIPSSLCEVSGLQILSLRKNHFSGSFPKCWHRQFMLWGIDVSENNLSGEIPESLGML 662

Query:   631 SQLTLMDLGKNGLSGEIPTWIGEGXXXXXXXXXXXXXFNGSIPLQLCHLANVQILDLSSN 690
               L+++ L +N L G+IP  +                  G +P  +  L+++ +L L SN
Sbjct:   663 PSLSVLLLNQNSLEGKIPESL-RNCSGLTNIDLGGNKLTGKLPSWVGKLSSLFMLRLQSN 721

Query:   691 NISGIIPKCFNNFTAMT--HEKGSNLT-LISNYYTSLAYDSLKTTKSYFDKAV-LTWKGS 746
             + +G IP    N   +      G+ ++  I    ++L   +  T    F   V +  +  
Sbjct:   722 SFTGQIPDDLCNVPNLRILDLSGNKISGPIPKCISNLTAIARGTNNEVFQNLVFIVTRAR 781

Query:   747 QYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLD 806
             +YE      +   ++LS N + GE+P EI+ L  L  LNLSRN++ G I  KI +L  L+
Sbjct:   782 EYE-----AIANSINLSGNNISGEIPREILGLLYLRILNLSRNSMAGSIPEKISELSRLE 836

Query:   807 FLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNEL-CGL 865
              LDLS+N+F G+IP S + +S L  ++LS+N L G IP   + Q    S+Y GNEL CG 
Sbjct:   837 TLDLSKNKFSGAIPQSFAAISSLQRLNLSFNKLEGSIPKLLKFQD--PSIYIGNELLCGK 894

Query:   866 PLPNKCPDE 874
             PLP KCP +
Sbjct:   895 PLPKKCPKD 903

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 262/852 (30%), Positives = 414/852 (48%)

Query:   103 GTISSSLLILQHLTYLDLSGNNFSGSSIPEFIXXXXXXXXXXXXNTEFAGPIPLQLGNLS 162
             G I SS+  L HL ++D S NNFSG  IP  +               F+G +P  +GNLS
Sbjct:   150 GRIPSSIGNLSHLIFVDFSHNNFSGQ-IPSSLGYLSHLTSFNLSYNNFSGRVPSSIGNLS 208

Query:   163 RLQVLDIGFNSLISGE---NLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALY 219
              L  L +  NS   GE   +L  L HL+ LI LD +   + K  + +  LS L S+    
Sbjct:   209 YLTTLRLSRNSFF-GELPSSLGSLFHLTDLI-LDTNHF-VGKIPSSLGNLSHLTSID--- 262

Query:   220 LISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQ 279
             L   +    IP S   L + + L   ++  NN+   I P  F  + N ++++N+ SN+L 
Sbjct:   263 LHKNNFVGEIPFS---LGNLSCLTSFILSDNNIVGEI-PSSFG-NLNQLDILNVKSNKLS 317

Query:   280 GSIPEAFGHMPSLNTLFLASNQFR-EIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSD 338
             GS P A  ++  L+TL L +N+    +P ++ ++ NLK    + N   G L   + N+  
Sbjct:   318 GSFPIALLNLRKLSTLSLFNNRLTGTLPSNMSSLSNLKLFDATENHFTGPLPSSLFNIP- 376

Query:   339 GCTKTSLAWLFLDSNEITGSLP--NFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLF 396
                  SL  + L++N++ GSL   N   +S+L  L + NN   G I++S+ +LV L+ L 
Sbjct:   377 -----SLKTITLENNQLNGSLGFGNISSYSNLTVLRLGNNNFRGPIHRSISKLVNLKELD 431

Query:   397 LHNNSLRGVISEAFLSNLSNLTILYLAD-NSLTLEFSHDWIPPFQL-SQVNLGSCKIGPR 454
             L N + +G++     S+L ++  L L+  N+ T    ++ +  F+L   ++L    +   
Sbjct:   432 LSNYNTQGLVDFTIFSHLKSIEYLNLSHLNTTTTIDMYEILSSFKLLDTLDLSGSHVSTT 491

Query:   455 FPKWLRNQNQIL--SLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFH 512
                 L N + +L   L +S  GI++  P +  +Q   L+  ++SNN+IKG++P       
Sbjct:   492 NKSSLSNSSLVLISQLYLSGCGITE-FPKFLRSQELMLTL-DISNNKIKGQVPGWLWML- 548

Query:   513 PYRPGIDISSNQFEG----------PIPQLPLNASFLNLSKNKFSGSI-SFLCSITGHKL 561
             P    +++S+N F G           I + P     L  S N F+G+I SF+C +    L
Sbjct:   549 PVLNYVNLSNNTFIGFERSTKLGLTSIQEPPAMRQ-LFCSNNNFTGNIPSFICELP--YL 605

Query:   562 DYIDLSNNLLSGRLPDCWSQFDS--LAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRL 619
               +D SNN  +G +P C     S  L  LNL +N   G +P++I   ++L SL + +N+L
Sbjct:   606 STLDFSNNKFNGSIPTCMGNIQSPYLQALNLRHNRLSGLLPENI--FESLISLDVGHNQL 663

Query:   620 TGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGXXXXXXXXXXXXXFNGSIPLQLCHL 679
              G+LP   ++ S L L+++  N +S   P W+                F G  P++    
Sbjct:   664 VGKLPRSLSHISSLGLLNVESNKISDTFPLWLSS-LQELQVLVLRSNAFYG--PIEKTQF 720

Query:   680 ANVQILDLSSNNISGIIP-KCFNNFTAM----THEKGSNLTLISNYYTSLAYDSLKTTKS 734
             + ++I+D+S N  +G +P   F N+TAM     +E  SN   +SN Y S  Y        
Sbjct:   721 SKLRIIDISGNQFNGTLPANFFVNWTAMFSLDENEDQSNGETMSNMYMSTDY-------F 773

Query:   735 YFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQ 794
             YFD  VL  KG + E +  L +  ++D S NK  GE+P+ I  L  L  LNLS N L+G 
Sbjct:   774 YFDSMVLMNKGVEMELERVLKVFTVIDFSGNKFEGEIPKSIGLLKELHVLNLSNNALSGH 833

Query:   795 ITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFST 854
             I   +G L +L+ LD+S+N+  G IP  L +L+ L+ M+ S+N L G +P GTQ Q+   
Sbjct:   834 IASSMGNLMALESLDVSQNKLSGEIPQELGKLTYLAYMNFSHNQLVGLLPGGTQFQTQKC 893

Query:   855 SMYAGNE-LCGLPLPNKCPDEDSAPGPGKDDANTSEDEDQFIT-LGFYVSLILGFFVGFW 912
             S +  N  L G  L   C      P          EDE++ I+ +   +  ILG  +G  
Sbjct:   894 SSFEDNHGLYGPSLEKICDIHGKTPQQSDMAPEPEEDEEEVISWIAAVIGFILGTALGLT 953

Query:   913 GFCGTLLVKSSW 924
               C     K  W
Sbjct:   954 FGCILFSYKPDW 965

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 289/969 (29%), Positives = 461/969 (47%)

Query:     7 LVLQYLALFSVILFDQLEPRAADSSNIIRCIDEEREALLAFKQGLV------DES---GI 57
             + L ++ LF     D L   AA + N+  C  E+R+ALLAFK          D     GI
Sbjct:    13 ITLSFIFLFICHFLDVL---AAPTRNL--CRPEQRDALLAFKNEFEIGKPSPDHCKIYGI 67

Query:    58 LS-----SWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLIL 112
              S     SWG      DCC W GV C+ ++G V +LDL    +      +   +SS+  L
Sbjct:    68 ESPRKTDSWGNNS---DCCNWEGVTCNAKSGEVIELDLSCSSLHG----RFHSNSSIRNL 120

Query:   113 QHLTYLDLSGNNFSGSSIPEFIXXXXXXXXXXXXNTEFAGPIPLQLGNLSRLQVLDIGFN 172
               LT LDLS N+F G  I   I            +  F+G I   +GNLSRL  L++ F+
Sbjct:   121 HFLTTLDLSFNDFKGQ-ITSSIENLSHLTYLDLSSNHFSGQILNSIGNLSRLTYLNL-FD 178

Query:   173 SLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSS 232
             +  SG+    + +LS L +LDLS++    F  +   +  L  L  L L S      IPSS
Sbjct:   179 NQFSGQAPSSICNLSHLTFLDLSYNRF--FGQFPSSIGGLSHLTTLSLFSNKFSGQIPSS 236

Query:   233 DLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSL 292
                L++ T+L+   +  NN +  I  ++ N+S   +  + L SN   G IP +FG++  L
Sbjct:   237 IGNLSNLTTLD---LSNNNFSGQIPSFIGNLSQ--LTFLGLFSNNFVGEIPSSFGNLNQL 291

Query:   293 NTLFLASNQFR-EIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSD---------GCTK 342
               L++  N+     P  L N+  L  L+LS N   G L   I +LS+           T 
Sbjct:   292 TRLYVDDNKLSGNFPNVLLNLTGLSLLSLSNNKFTGTLPPNITSLSNLMDFDASDNAFTG 351

Query:   343 T---------SLAWLFLDSNEITGSLPNFGGFSS---LKRLSIANNRLNGTINKSVGQLV 390
             T         SL ++ L+ N++ G+L  FG  SS   L  L I NN   G I  S+ +LV
Sbjct:   352 TFPSFLFTIPSLTYIRLNGNQLKGTL-EFGNISSPSNLYELDIGNNNFIGPIPSSISKLV 410

Query:   391 KLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPF--QLSQVNLGS 448
             KL  L + + + +G +  +  S+L +L  L ++  + T     ++   +  +L  ++L  
Sbjct:   411 KLFRLDISHLNTQGPVDFSIFSHLKSLLDLNISHLNTTTRIDLNYFLSYFKRLLLLDLSG 470

Query:   449 CKIGPRFPKWLRNQ-NQIL-SLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPN 506
               +       + +  +Q++ SL +S  GI++  P +   Q + L F ++SNN+IKG++P+
Sbjct:   471 NHVSATNKSSVSDPPSQLIQSLYLSGCGITE-FPEFVRTQ-HELGFLDISNNKIKGQVPD 528

Query:   507 LSSRFHPYRPGIDISSNQFEG-PIPQLPLNASFLNL--SKNKFSGSI-SFLCSITGHKLD 562
                R  P    +++S+N   G   P  P   S L L  S N F G I SF+C +    L+
Sbjct:   529 WLWRL-PILYYVNLSNNTLIGFQRPSKP-EPSLLYLLGSNNNFIGKIPSFICGL--RSLN 584

Query:   563 YIDLSNNLLSGRLPDCWSQFDS-LAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTG 621
              +DLS+N  +G +P C     S L++LNL  N   G +P  I   + L+SL + +N+L G
Sbjct:   585 TLDLSDNNFNGSIPRCMGHLKSTLSVLNLRQNHLSGGLPKQI--FEILRSLDVGHNQLVG 642

Query:   622 ELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGXXXXXXXXXXXXXFNGSIPLQLCHLAN 681
             +LP   +  S L ++++  N ++   P W+                F+G  P+       
Sbjct:   643 KLPRSLSFFSTLEVLNVESNRINDTFPFWLSS-LPKLQVLVLRSNAFHG--PIHEATFPE 699

Query:   682 VQILDLSSNNISGIIP-KCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAV 740
             ++I+D+S N  +G +P + F  ++AM+   G N    +  Y       + +   Y D  V
Sbjct:   700 LRIIDISHNRFNGTLPTEYFVKWSAMS-SLGKNEDQSNEKY-------MGSGLYYQDSMV 751

Query:   741 LTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIG 800
             L  KG   E    L +   +D S N+  GE+P+ I  L  L+ L+LS N  +G +   +G
Sbjct:   752 LMNKGVAMELVRILTIYTAVDFSGNRFEGEIPKSIGLLKELLVLSLSNNAFSGHMPSSMG 811

Query:   801 QLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN 860
              L +L+ LD+S+N+  G IP  L  LS L+ M+ S+N L+G +P G Q  + + S +  N
Sbjct:   812 NLTALESLDVSKNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGQQFLTQNCSAFEDN 871

Query:   861 -ELCGLPLPNKCPDEDSAPGPGKDDANTSEDEDQFITLGFYVSLILGFFVGF-WGFC-GT 917
               L G  L   C D  +     + +   +E+ED+   L  +++  +GF  G  +G   G 
Sbjct:   872 LGLFGSSLEEVCRDIHTPASHQQFETPETEEEDE--DLISWIAAAIGFGPGIAFGLMFGY 929

Query:   918 LLV--KSSW 924
             +LV  K  W
Sbjct:   930 ILVSYKPEW 938

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 255/859 (29%), Positives = 417/859 (48%)

Query:   101 LKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIXXXXXXXXXXXXN-----------TE 149
             L G I  +LL L  L  LDLS ++F G     ++            N            +
Sbjct:   179 LSGQIPINLLQLTKLVSLDLSSSDFFGDESFHYLSIDKSFLPLLARNLRNLRELDMSYVK 238

Query:   150 FAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVL 209
              +  IP +  N+  L+ L++   +L  GE    +  + +L  +DL  +N +   N + V 
Sbjct:   239 ISSEIPEEFSNIRSLRSLNLNGCNLF-GEFPSSILLIPNLQSIDLG-NNPNLRGN-LPVF 295

Query:   210 SKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVE 269
              + +SL  L ++       IP S   L + TSL + V   +  +  I P+     S+L  
Sbjct:   296 HENNSLLKLTILYTSFSGAIPDSISSLKNLTSLTLSV---SYFSGKI-PFSLGNLSHLSH 351

Query:   270 LINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFR-EIPKSLGNMCNLKSLTLSYNTLRGD 328
             L +L SN L G IP + G++  L   ++  N+    +P +L N+  L +++LS N   G 
Sbjct:   352 L-SLSSNNLIGEIPSSIGNLNQLTNFYVGGNKLSGNLPATLSNLTKLNTISLSSNQFTGS 410

Query:   329 LSEIIQNLSDGCTKTSLAWLFLDSNEITGS-LPNFGGFSSLKRLSIANNRLNGTIN-KSV 386
             L   I  LS       L + F D N   G+ L       SL R+ ++ N+LN  +  +++
Sbjct:   411 LPPSISQLS------KLKFFFADDNPFIGAILSPLLKIPSLTRIHLSYNQLNDLVGIENI 464

Query:   387 GQLVKLESLFL-HNN--SLRGVISEAFLSNLSNLTILYLADNSL-TLEFSHDWIPPFQLS 442
               L  LE+ ++ H N   +R +    F S+L  L  LY++   + T   + D+  P  L 
Sbjct:   465 FMLPNLETFYIYHYNYTKVRPLDLNVF-SSLKQLGTLYISRIPISTTNITSDF--PSNLE 521

Query:   443 QVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKG 502
              ++L SC I   FP+++R    +  LD+SN+ I   VP+W W     L+  +LSNN + G
Sbjct:   522 YLSLRSCNITD-FPEFIRKGRNLQILDLSNNKIKGQVPDWLWRMP-TLNSVDLSNNSLSG 579

Query:   503 KLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNA-SFLNLSKNKFSGSIS-FLCSITGHK 560
                ++ +        +D+SSN F+GP+  LP  +  + + S N F+G I   +C ++   
Sbjct:   580 FHVSVKASPESQLTSVDLSSNAFQGPL-FLPSKSLRYFSGSNNNFTGKIPRSICGLSS-- 636

Query:   561 LDYIDLSNNLLSGRLPDCWSQF-DSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRL 619
             L+ +DLSNN L+G LP C      SL+ L+L NNS  G +P+       L+SL + +NR+
Sbjct:   637 LEILDLSNNNLNGSLPWCLETLMSSLSDLDLRNNSLSGSLPEIFMNATKLRSLDVSHNRM 696

Query:   620 TGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGXXXXXXXXXXXXXFNGS---IPLQL 676
              G+LP   T  S L ++++G N ++   P  +                F+G+   +    
Sbjct:   697 EGKLPGSLTGCSSLEVLNVGSNRINDMFPFELNS-LQKLQVLVLHSNKFHGTLHNVDGVW 755

Query:   677 CHLANVQILDLSSNNISGIIPK-CFNNFTAMTHEKGSNLTLISNYYTSLA-YDSLKTTKS 734
                  +QI+D+S N+  GI+P   F N+TAM+ +K +N+     Y  + + Y S   +  
Sbjct:   756 FGFPQLQIIDVSHNDFFGILPSDYFMNWTAMSSKKDNNIE--PEYIQNPSVYGS---SLG 810

Query:   735 YFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQ 794
             Y+   VL  KG   E +  L +   +DLS N+L G++P+ I  L  L  LN+S N  TG 
Sbjct:   811 YYTSLVLMSKGVSMEMERVLTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSSNGFTGH 870

Query:   795 ITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFST 854
             I   +  LK+L+ LD+S+N   G IP  L  LS L+ +++S+N L G IP GTQ Q    
Sbjct:   871 IPSSLANLKNLESLDISQNNISGEIPPELGTLSSLAWINVSHNQLVGSIPQGTQFQRQKC 930

Query:   855 SMYAGNE-LCGLPLPNKCPD-EDSAPGPGKDDANTSEDEDQFITLGFYVSLILGFFVGF- 911
             S Y GN  L G  L N C   ++S P   +      E+E++  +   +++  LGF  G  
Sbjct:   931 SSYEGNPGLNGPSLENVCGHIKESTPTQTEPLETKEEEEEESFS---WIAAGLGFAPGVV 987

Query:   912 WGFC-GTLLVKSSWRHRYY 929
             +G   G ++V  S++H+++
Sbjct:   988 FGLAMGYIVV--SYKHQWF 1004

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 281/910 (30%), Positives = 424/910 (46%)

Query:    60 SWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLD 119
             SWG      DCC W GV C+ ++G V +L+L    +      +   +SS+  L  LT LD
Sbjct:    12 SWGNNS---DCCNWEGVTCNAKSGEVIELNLSCSSLHG----RFHSNSSIRNLHFLTTLD 64

Query:   120 LSGNNFSGSSIPEFIXXXXXXXXXXXXNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGEN 179
              S N+F G  I   I               F+G I   +GNLSRL  LD+ FN   SG+ 
Sbjct:    65 RSHNDFEGQ-ITSSIENLSHLTSLDLSYNRFSGQILNSIGNLSRLTSLDLSFNQF-SGQI 122

Query:   180 LEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSS 239
                + +LS L +L LS +    F      +  L  L  L L         PSS   L++ 
Sbjct:   123 PSSIGNLSHLTFLGLSGNRF--FGQIPSSIGNLSHLTFLGLSGNRFFGQFPSSIGGLSNL 180

Query:   240 TSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLAS 299
             T+L +     N  +  I   + N+S  +V  + L  N   G IP +FG++  L  L ++ 
Sbjct:   181 TNLHLSY---NKYSGQIPSSIGNLSQLIV--LYLSVNNFYGEIPSSFGNLNQLTRLDVSF 235

Query:   300 NQFR-EIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSD---------GCTKT------ 343
             N+     P  L N+  L  ++LS N   G L   I +LS+           T T      
Sbjct:   236 NKLGGNFPNVLLNLTGLSVVSLSNNKFTGTLPPNITSLSNLMAFYASDNAFTGTFPSFLF 295

Query:   344 ---SLAWLFLDSNEITGSLPNFGGFSS---LKRLSIANNRLNGTINKSVGQLVKLESLFL 397
                SL +L L  N++ G+L  FG  SS   L+ L+I +N   G I  S+ +L+ L+ L +
Sbjct:   296 IIPSLTYLGLSGNQLKGTL-EFGNISSPSNLQYLNIGSNNFIGPIPSSISKLINLQELGI 354

Query:   398 -H-NNSLRGVISEAF--LSNLSNLTILYLADNSLTLEFSHDWIPPFQ-LSQVNLGSCKIG 452
              H N   R V    F  L +L +L + YL   ++ L   +D +P F+ L  ++L    + 
Sbjct:   355 SHLNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDL---NDILPYFKTLRSLDLSGNLVS 411

Query:   453 PRFPKWLRNQ---NQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSS 509
                   + +      I SL +S  GI+D  P     Q + L F ++SNN+IKG++P    
Sbjct:   412 ATNKSSVSSDPPSQSIQSLYLSGCGITD-FPEILRTQ-HELGFLDVSNNKIKGQVPGWLW 469

Query:   510 RFHPYRPGIDISSNQFEG---PIPQLPLNASFLNLSKNKFSGSI-SFLCSITGHKLDYID 565
                P    +++S+N F G   P    P  A  L  S N F+G I SF+C +    L  +D
Sbjct:   470 TL-PNLFYLNLSNNTFIGFQRPTKPEPSMAYLLG-SNNNFTGKIPSFICEL--RSLYTLD 525

Query:   566 LSNNLLSGRLPDCWSQFDS-LAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELP 624
             LS+N  SG +P C     S L+ LNL  N+  G  P+ I   ++L+SL + +N+L G+LP
Sbjct:   526 LSDNNFSGSIPRCMENLKSNLSELNLRQNNLSGGFPEHI--FESLRSLDVGHNQLVGKLP 583

Query:   625 SFFTNGSQLTLMDLGKNGLSGEIPTWIGEGXXXXXXXXXXXXXFNGSIPLQLCHLANVQI 684
                   S L ++++  N ++   P W+                F+G  P+       ++I
Sbjct:   584 RSLRFFSNLEVLNVESNRINDMFPFWLSS-LQKLQVLVLRSNAFHG--PINQALFPKLRI 640

Query:   685 LDLSSNNISGIIP-KCFNNFTAM----THEKGSNLTLISNYYTSLAYDSLKTTKSYFDKA 739
             +D+S N+ +G +P + F  ++ M    T+E GSN+    NY  S  Y        Y D  
Sbjct:   641 IDISHNHFNGSLPTEYFVEWSRMSSLGTYEDGSNV----NYLGS-GY--------YQDSM 687

Query:   740 VLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI 799
             VL  KG + E    L +   +D S NK  GE+P+ I  L  L  LNLS N  TG I   I
Sbjct:   688 VLMNKGVESELVRILTIYTAVDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFTGHIPSSI 747

Query:   800 GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAG 859
             G L +L+ LD+S+N+ +G IP  +  LS LS M+ S+N L+G +P G Q  +   S + G
Sbjct:   748 GNLTALESLDVSQNKLYGEIPQEIGNLSLLSYMNFSHNQLTGLVPGGQQFLTQRCSSFEG 807

Query:   860 N-ELCGLPLPNKCPDEDSAPGPGKDDANTSEDEDQFITLGFYVSLILGFFVGF-WGFC-G 916
             N  L G  L   C D  +     + +   +E+ED+   L  +++  +GF  G  +G   G
Sbjct:   808 NLGLFGSSLEEVCRDIHTPASHQQFETPQTEEEDE--DLISWIAAAIGFGPGIAFGLMFG 865

Query:   917 TLLV--KSSW 924
              +LV  K  W
Sbjct:   866 YILVSYKPEW 875

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 232/733 (31%), Positives = 351/733 (47%)

Query:   193 DLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTI-PSSDLYLNSSTSLEVIVILGNN 251
             D S  N + + N +Q  +K   +  L L S  L  ++ P+S L+      L  + +  NN
Sbjct:    51 DSSDCNQTDYFNGVQCDNKTGVVTKLQLPSGCLHGSMKPNSSLF--GLQHLRYLNLSNNN 108

Query:   252 LTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGN 311
              T +  P  F  + N +E++ L SN   G +P +F ++  LN L L+ N+       + N
Sbjct:   109 FTSASLPSGFG-NLNRLEVLYLSSNGFLGQVPSSFSNLSQLNILDLSHNELTGSFPFVQN 167

Query:   312 MCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSL--PNFGGFSSLK 369
             +  L  L LSYN   G +   +  L        L+ L L  N +TGS+  PN    S L+
Sbjct:   168 LTKLSILVLSYNHFSGTIPSSLLTLP------FLSSLDLRENYLTGSIEAPNSSTSSRLE 221

Query:   370 RLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSL-T 428
              + + NN   G I + + +L+ L+ L L        I     S+  +L  L L+ NSL  
Sbjct:   222 FMYLGNNHFEGQILEPISKLINLKHLDLSFLKTSYPIDLNLFSSFKSLVRLVLSGNSLLA 281

Query:   429 LEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTY 488
                + D   P  L  + L SC +   FP  L+N  ++  +D+SN+ I   VP WFWN   
Sbjct:   282 TSITSDSKIPLNLENLVLLSCGL-IEFPTILKNLTKLEHIDLSNNKIKGKVPEWFWNLP- 339

Query:   489 NLSFFNLSNN---QIKGK---LPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLS 542
              L   NL NN    ++G    L N S R       +D++ N F GP P+ PL+ + L+  
Sbjct:   340 RLRRVNLFNNLFTDLEGSEEVLVNSSVRL------LDLAYNHFRGPFPKPPLSINLLSAW 393

Query:   543 KNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQF-DSLAILNLANNSFFGKIPD 601
              N F+G+I  L +     L  +DLS N L+G +P C S F +SL ++NL  N+  G +PD
Sbjct:   394 NNSFTGNIP-LETCNRSSLAILDLSYNNLTGPIPRCLSDFQESLIVVNLRKNNLEGSLPD 452

Query:   602 SIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGXXXXXXX 661
                    L++L +  N+LTG+LP    N S L  + +  N +    P W+ +        
Sbjct:   453 IFSDGALLRTLDVGYNQLTGKLPRSLLNCSMLRFVSVDHNKIKDTFPFWL-KALPDLQAL 511

Query:   662 XXXXXXFNGSI-PLQLCHLA--NVQILDLSSNNISGIIP-KCFNNFTAMTHEKGSNLTLI 717
                   F+G I P     LA   ++IL++S NN +G +P   F N+ A + +   +  + 
Sbjct:   512 TLRSNKFHGPISPPDRGPLAFPKLRILEISDNNFTGSLPPNYFVNWEASSLQMNEDGRIY 571

Query:   718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD 777
                Y +  Y        Y D   L +KG   E    L     +D S NKL G++PE I  
Sbjct:   572 MGDYNNPYY-------IYEDTVDLQYKGLFMEQGKVLTSYATIDFSGNKLEGQIPESIGL 624

Query:   778 LAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYN 837
             L  LIALNLS N  TG I   +  +  L+ LDLSRNQ  G+IP+ L  LS L+ + +++N
Sbjct:   625 LKALIALNLSNNAFTGHIPLSLANVTELESLDLSRNQLSGTIPNGLKTLSFLAYISVAHN 684

Query:   838 NLSGKIPSGTQLQSFSTSMYAGNE-LCGLPLPNKCPDEDSAPGPGKDDANTSEDEDQFIT 896
              L G+IP GTQ+   S S + GN  LCGLPL   C      P P ++D +      + + 
Sbjct:   685 QLIGEIPQGTQITGQSKSSFEGNAGLCGLPLQGSC-FAPPTPQPKEEDEDEEVLNWKAVV 743

Query:   897 LGFYVSLILGFFV 909
             +G++  L+LG  +
Sbjct:   744 IGYWPGLLLGLIM 756

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 223/727 (30%), Positives = 352/727 (48%)

Query:   203 SNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFN 262
             S+ ++ + +++SL  L +   ++   IP    ++N  TSL  + +  N    SI   LF+
Sbjct:    95 SSILRPILRINSLVGLDVSFNNIQGEIPGY-AFVNL-TSLISLDMCCNRFNGSIPHELFS 152

Query:   263 VSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFR-EIPKSLGNMCNLKSLTLS 321
             ++ NL  L +L  N + G++      + +L  L L  N     IP  +G++  L +LTL 
Sbjct:   153 LT-NLQRL-DLSRNVIGGTLSGDIKELKNLQELILDENLIGGAIPSEIGSLVELLTLTLR 210

Query:   322 YNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNG 380
              N     +   +  L      T L  + L +N ++  +P+  G   +L  LS++ N+L+G
Sbjct:   211 QNMFNSSIPSSVSRL------TKLKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSMNKLSG 264

Query:   381 TINKSVGQLVKLESLFLHNNS-LRGVISEAFLSNLSNLTILYLADNSLTLEFSHDW--IP 437
              I  S+  L  LE+L L NN+ L G I  A+L  L  L +L L  N+  L+++++    P
Sbjct:   265 GIPSSIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNN-KLQWNNNGYVFP 323

Query:   438 PFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSN 497
              F+L+ ++L SC +    P WL+NQ  ++ LD+S + +    P W  +    +    LS+
Sbjct:   324 QFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPKWLAD--LKIRNITLSD 381

Query:   498 NQIKGKLP-NLSSRFHPYRPGIDISSNQFEGPIPQL--PLNASFLNLSKNKFSGSISFLC 554
             N++ G LP NL  R   Y   + +S N F G IP          L LS+N FSGS+    
Sbjct:   382 NRLTGSLPPNLFQRPSLYY--LVLSRNNFSGQIPDTIGESQVMVLMLSENNFSGSVPK-- 437

Query:   555 SITGHK-LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLS 613
             SIT    L  +DLS N LSG  P    +   L  L++++N F G +P   G   ++  +S
Sbjct:   438 SITKIPFLKLLDLSKNRLSGEFPRFRPE-SYLEWLDISSNEFSGDVPAYFGGSTSMLLMS 496

Query:   614 LYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGXXXXXXXXXXXXXFNGSIP 673
                N  +GE P  F N S L  +DL  N +SG + + I +                GSIP
Sbjct:   497 --QNNFSGEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIP 554

Query:   674 LQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTK 733
               + +L ++++LDLS NN+ G +P    N T M      +   I  Y++S  Y  +   +
Sbjct:   555 EGISNLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYFSS--YTDIPNIE 612

Query:   734 SYFD-------KAVLTWKGS-QYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALN 785
                +         V+ WK S Q  +     L  +LDLS NKL GE+P  + +L  L  LN
Sbjct:   613 RLIEIESEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKSLKVLN 672

Query:   786 LSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845
             LS N  +G I    G L+ ++ LDLS N   G IP +LS+LS L+ +DL  N L G+IP 
Sbjct:   673 LSNNEFSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGRIPE 732

Query:   846 GTQLQSFST-SMYAGNE-LCGLPLPNKC-PDEDSAPGPGKDDANTSEDEDQFITLGFYVS 902
               QL   +  ++YA N  +CG+ +   C P +   P   K++ +  E+E  F      + 
Sbjct:   733 SPQLDRLNNPNIYANNSGICGMQIQVPCFPTQTKQPAEEKEEEDKEEEETIFSWNAAAIG 792

Query:   903 LILGFFV 909
                GF +
Sbjct:   793 CSCGFLI 799

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 226/777 (29%), Positives = 374/777 (48%)

Query:   147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
             N   +  I  + G L+ L+VL +  +  ++     + S+LS L  LDLS + L+   +++
Sbjct:   108 NNFTSSSISSKFGMLNNLEVLSLSSSGFLAQVPFSF-SNLSMLSALDLSKNELTGSLSFV 166

Query:   207 QVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSN 266
             + L KL  L   Y     +    P+S L+      L  + +  NN T S  P+ F  + N
Sbjct:   167 RNLRKLRVLDVSYNHFSGI--LNPNSSLF--ELHHLIYLNLRYNNFTSSSLPYEFG-NLN 221

Query:   267 LVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLR 326
              +E++++ SN   G +P    ++  L  L+L  N F      + N+  L  L L  N   
Sbjct:   222 KLEVLDVSSNSFFGQVPPTISNLTQLTELYLPLNDFTGSLPLVQNLTKLSILHLFGNHFS 281

Query:   327 GDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSL--PNFGGFSSLKRLSIANNRLNGTINK 384
             G +   +       T   L+ ++L+ N ++GS+  PN    S L+ L +  N L G I +
Sbjct:   282 GTIPSSL------FTMPFLSSIYLNKNNLSGSIEVPNSSSSSRLEHLYLGKNHL-GKILE 334

Query:   385 SVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT-LEFSHDWIPPFQLSQ 443
              + +LV L+ L L   +    I  +  S+L +L +L L+ + ++    + D   P  L  
Sbjct:   335 PIAKLVNLKELDLSFLNTSHPIDLSLFSSLKSLLLLDLSGDWISKASLTLDSYIPSTLEV 394

Query:   444 VNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGK 503
             + L  C I   FP   +  + +  + +SN+ IS   P W W+     S F +++N + G 
Sbjct:   395 LRLEHCDIS-EFPNVFKTLHNLEYIALSNNRISGKFPEWLWSLPRLSSVF-ITDNLLTGF 452

Query:   504 LPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISF-LCSITGHKLD 562
               +     +     + + +N  EG +P LPL+ ++ +   N+F G I   +C+ +   LD
Sbjct:   453 EGSSEVLVNSSVQILSLDTNSLEGALPHLPLSINYFSAIDNRFGGDIPLSICNRSS--LD 510

Query:   563 YIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGE 622
              +DLS N  SG++P C S   +L  L L  N+  G IPD       L+S  +  NRLTG+
Sbjct:   511 VLDLSYNNFSGQIPPCLS---NLLYLKLRKNNLEGSIPDKYYVDTPLRSFDVGYNRLTGK 567

Query:   623 LPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGXXXXXXXXXXXXXFNGSI--PLQ-LCHL 679
             LP    N S L  + +  NG+    P ++ +              F G +  P Q     
Sbjct:   568 LPRSLINCSALQFLSVDHNGIKDTFPFYL-KALPKLQVLLLSSNEFYGPLSPPNQGPLGF 626

Query:   680 ANVQILDLSSNNISGIIPK-CFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDK 738
               ++IL+++ N ++G +P   F N+ A +H    +L L    Y+ + + +   T  Y++ 
Sbjct:   627 PELRILEIAGNKLTGSLPPDFFVNWKASSHTMNEDLGLYM-VYSKVIFGNYHLT--YYET 683

Query:   739 AVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK 798
               L +KG   E ++ L     +DLS N+L GE+PE +  L  LIALNLS N  TG I   
Sbjct:   684 IDLRYKGLSMEQENVLTSSATIDLSGNRLEGEIPESLGLLKALIALNLSNNAFTGHIPLS 743

Query:   799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYA 858
             +  LK ++ LDLS NQ  G+IP+ L  LS L+ M++S+N L+G+IP GTQ+     S + 
Sbjct:   744 LANLKKIESLDLSSNQLSGTIPNGLGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFE 803

Query:   859 GNE-LCGLPLPNKCPDEDSAPGPG-KDDANTSEDEDQF----ITLGFYVSLILGFFV 909
             GN  LCG PL   C   ++ P    K++    EDE +     + +G+ V ++LG  +
Sbjct:   804 GNAGLCGFPLQESCFGTNAPPAQKPKEEEEAEEDEQELNWKAVAIGYGVGVLLGLAI 860

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 747 (268.0 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 268/870 (30%), Positives = 404/870 (46%)

Query:    37 IDEEREALLAFKQGLV---DESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHIL 93
             I+ + + LL  K+ LV    E   L  W  ++   + C W GV C N TG    + L++ 
Sbjct:    23 INNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNI--NYCSWTGVTCDN-TGLFRVIALNLT 79

Query:    94 QVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIXXXXXXXXXXXXNTEFAGP 153
              +     L G+IS       +L +LDLS NN  G  IP  +            + +  G 
Sbjct:    80 GLG----LTGSISPWFGRFDNLIHLDLSSNNLVGP-IPTALSNLTSLESLFLFSNQLTGE 134

Query:   154 IPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLD 213
             IP QLG+L  ++ L IG N L+ G+  E L +L +L  L L+   L+        L +L 
Sbjct:   135 IPSQLGSLVNIRSLRIGDNELV-GDIPETLGNLVNLQMLALASCRLT--GPIPSQLGRLV 191

Query:   214 SLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINL 273
              +++L L    L   IP+    L + + L V     N L  +I P       NL E++NL
Sbjct:   192 RVQSLILQDNYLEGPIPAE---LGNCSDLTVFTAAENMLNGTI-PAELGRLENL-EILNL 246

Query:   274 GSNQLQGSIPEAFGHMPSLNTLFLASNQFRE-IPKSLGNMCNLKSLTLSYNTLRGDLSEI 332
              +N L G IP   G M  L  L L +NQ +  IPKSL ++ NL++L LS N L G++ E 
Sbjct:   247 ANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEE 306

Query:   333 IQNLSD------------G------CTK-TSLAWLFLDSNEITGSLP-NFGGFSSLKRLS 372
               N+S             G      C+  T+L  L L   +++G +P       SLK+L 
Sbjct:   307 FWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLD 366

Query:   373 IANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFS 432
             ++NN L G+I +++ +LV+L  L+LHNN+L G +S + +SNL+NL  L L  N+L  +  
Sbjct:   367 LSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPS-ISNLTNLQWLVLYHNNLEGKLP 425

Query:   433 HDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSF 492
              +     +L  + L   +     P+ + N   +  +D+  +     +P     +   L+ 
Sbjct:   426 KEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSI-GRLKELNL 484

Query:   493 FNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQ---LPLNASFLNLSKNKFSGS 549
              +L  N++ G LP      H     +D++ NQ  G IP           L L  N   G+
Sbjct:   485 LHLRQNELVGGLPASLGNCHQLNI-LDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGN 543

Query:   550 I-SFLCSITGHKLDYIDLSNNLLSGRL-PDCWSQFDSLAILNLANNSFFGKIPDSIGFLK 607
             +   L S+    L  I+LS+N L+G + P C S   S    ++ NN F  +IP  +G  +
Sbjct:   544 LPDSLISL--RNLTRINLSHNRLNGTIHPLCGSS--SYLSFDVTNNGFEDEIPLELGNSQ 599

Query:   608 NLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGXXXXXXXXXXXXX 667
             NL  L L  N+LTG++P       +L+L+D+  N L+G IP  +                
Sbjct:   600 NLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVL-CKKLTHIDLNNNF 658

Query:   668 FNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMT--HEKGSNLT-LISNYYTSL 724
              +G IP  L  L+ +  L LSSN     +P    N T +      G++L   I     +L
Sbjct:   659 LSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNL 718

Query:   725 -AYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGL-I 782
              A + L   K+ F        GS  +    L  +  L LS N L GE+P EI  L  L  
Sbjct:   719 GALNVLNLDKNQFS-------GSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQS 771

Query:   783 ALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK 842
             AL+LS N  TG I   IG L  L+ LDLS NQ  G +P S+  +  L  +++S+NNL GK
Sbjct:   772 ALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGK 831

Query:   843 IPSGTQLQSFSTSMYAGNE-LCGLPLPNKC 871
             +    Q   +    + GN  LCG PL ++C
Sbjct:   832 LKK--QFSRWPADSFLGNTGLCGSPL-SRC 858

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
 Identities = 247/851 (29%), Positives = 404/851 (47%)

Query:   108 SLLILQHLTYLDLSGNNFSGSSIPEFIXXXXXXXXXXXXNTEFAGPIPL-QLGNLSRLQV 166
             SL  L++L  LDLS N+F+ S  P F+            +    GP+P+ +L NL++L++
Sbjct:   133 SLRRLRNLEILDLSSNSFNNSIFP-FLNAATSLTTLFIQSNYIGGPLPIKELKNLTKLEL 191

Query:   167 LDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLP 226
             LD+   S  +G   E+ +HL  L  LDLS ++ S     +Q L  L +L+ L L    L 
Sbjct:   192 LDLS-RSGYNGSIPEF-THLEKLKALDLSANDFSSLVE-LQELKVLTNLEVLGLAWNHLD 248

Query:   227 PTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAF 286
               IP  +++     +L  + + GN     +   L N+  N + +++L SNQL G++P +F
Sbjct:   249 GPIPK-EVFCEMK-NLRQLDLRGNYFEGQLPVCLGNL--NKLRVLDLSSNQLSGNLPASF 304

Query:   287 GHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLA 346
               + SL  L L+ N F     SL  + NL  L +   +   ++ ++ +  S+   K  L 
Sbjct:   305 NSLESLEYLSLSDNNFEGF-FSLNPLANLTKLKVFRLSSTSEMLQV-ETESNWLPKFQLT 362

Query:   347 WLFLDSNEITGSLPNFGGF-SSLKRLSIANNRLNGTINK-SVGQLVKLESLFLHNNSLRG 404
                L    + G +PNF  + ++L+ + +++NRL+G I    +    +L+ L L NNS   
Sbjct:   363 VAALPFCSL-GKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSF-- 419

Query:   405 VISEAFLSNLSNLTILYLADNSLT--LEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQ 462
              I +   + +  L +L  + N +T  L  +   + P +L  +N          P  +   
Sbjct:   420 TIFQ-IPTIVHKLQVLDFSANDITGVLPDNIGHVLP-RLLHMNGSHNGFQGNLPSSMGEM 477

Query:   463 NQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISS 522
             N I  LD+S +  S  +P       ++L    LS+N   G +  + +R       + + +
Sbjct:   478 NDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIV-LRMHN 536

Query:   523 NQFEGPIP---QLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCW 579
             N F G I    +  +N S  + S N+ +G IS         L  + LSNNLL G LP   
Sbjct:   537 NLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSL 596

Query:   580 SQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLS--LYNNRLTGELPSFFTNGSQLTLMD 637
                  L  L+L+ N   G +P S+  + ++  +   L+NN  TG LP      + +  +D
Sbjct:   597 LAIHHLNFLDLSGNLLSGDLPSSV--VNSMYGIKIFLHNNSFTGPLPVTLLENAYI--LD 652

Query:   638 LGKNGLSGEIPTWIGEGXXXXXXXXXXXXXFNGSIPLQLCHLANVQILDLSSNNISGIIP 697
             L  N LSG IP ++  G               GSIP +LC L ++++LDLS N ++G+IP
Sbjct:   653 LRNNKLSGSIPQFVNTGKMITLLLRGNN--LTGSIPRKLCDLTSIRLLDLSDNKLNGVIP 710

Query:   698 KCFNNFTAMTHEKGSNLTLIS---NYYTSLAYDSLKTT------KSYFDKAVLTWK---G 745
              C N+ +    E G  L+  S   ++  SL  +  ++T        Y+D   +  +    
Sbjct:   711 PCLNHLSTELGE-GIGLSGFSQEISFGDSLQMEFYRSTFLVDEFMLYYDSTYMIVEIEFA 769

Query:   746 SQYEYQS----TLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQ 801
             ++  Y S    TL  +  LDLSSN+L G +P E+ DL+ L ALNLSRN L+  I     +
Sbjct:   770 AKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSK 829

Query:   802 LKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNE 861
             LK ++ LDLS N   G+IP  L+ L+ L+V ++S+NNLSG IP G Q  +F+ + Y GN 
Sbjct:   830 LKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQGGQFNTFNDNSYLGNP 889

Query:   862 L-CGLPLPNKCPDEDS---APGPGKDDANTSEDEDQFITLGFYVSLILGFFVGFWGFCGT 917
             L CG P    C  + +   A   G+++    +DE     +  Y +    + +   G    
Sbjct:   890 LLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVL 949

Query:   918 LLVKSSWRHRY 928
             +     WR  +
Sbjct:   950 MCFDCPWRRTW 960

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	956
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-63
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-59
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-51
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-18
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  232 bits (593), Expect = 1e-63
 Identities = 210/672 (31%), Positives = 332/672 (49%), Gaps = 91/672 (13%)

Query: 39  EEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPS 98
           EE E LL+FK  + D    LS+W   +   D C W+G+ C+N +  V  +DL        
Sbjct: 29  EELELLLSFKSSINDPLKYLSNW---NSSADVCLWQGITCNN-SSRVVSIDL------SG 78

Query: 99  PCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQL 158
             + G ISS++  L ++  ++LS N  SG    +   + S L YL LSN  F G IP   
Sbjct: 79  KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP--R 136

Query: 159 GNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLS-KFSNWMQVLSKLDSLKA 217
           G++  L+ LD+  N+++SGE    +   SSL  LDL  + L  K  N    L+ L SL+ 
Sbjct: 137 GSIPNLETLDLS-NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS---LTNLTSLEF 192

Query: 218 LYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQ 277
           L L S  L   IP     L    SL+ I +  NNL+  I   +  ++S  +  ++L  N 
Sbjct: 193 LTLASNQLVGQIPRE---LGQMKSLKWIYLGYNNLSGEIPYEIGGLTS--LNHLDLVYNN 247

Query: 278 LQGSIPEAFGHMPSLNTLFLASNQFR-EIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNL 336
           L G IP + G++ +L  LFL  N+    IP S+ ++  L SL LS N+L G++ E++  L
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307

Query: 337 SDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIA---NNRLNGTINKSVGQLVKLE 393
                  +L  L L SN  TG +P     +SL RL +    +N+ +G I K++G+   L 
Sbjct: 308 Q------NLEILHLFSNNFTGKIP--VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359

Query: 394 SLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGP 453
            L L  N+L G I E  L +  NL  L L  NSL  E     IP       +LG+C+   
Sbjct: 360 VLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNSLEGE-----IPK------SLGACRSLR 407

Query: 454 RFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHP 513
           R    +R Q+   S ++ +           + +   + F ++SNN ++G+          
Sbjct: 408 R----VRLQDNSFSGELPSE----------FTKLPLVYFLDISNNNLQGR---------- 443

Query: 514 YRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSG 573
                 I+S +++  +P L +    L+L++NKF G +    S    +L+ +DLS N  SG
Sbjct: 444 ------INSRKWD--MPSLQM----LSLARNKFFGGLP--DSFGSKRLENLDLSRNQFSG 489

Query: 574 RLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQL 633
            +P        L  L L+ N   G+IPD +   K L SL L +N+L+G++P+ F+    L
Sbjct: 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549

Query: 634 TLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS 693
           + +DL +N LSGEIP  +G  + +LV +++  N  +GS+P     LA      ++++ ++
Sbjct: 550 SQLDLSQNQLSGEIPKNLG-NVESLVQVNISHNHLHGSLPSTGAFLA------INASAVA 602

Query: 694 GIIPKCFNNFTA 705
           G I  C  + T+
Sbjct: 603 GNIDLCGGDTTS 614

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  219 bits (559), Expect = 4e-59
 Identities = 194/626 (30%), Positives = 288/626 (46%), Gaps = 114/626 (18%)

Query: 242 LEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQ 301
           ++ I +  N L+  I   +F  SS+L  L NL +N   GSIP   G +P+L TL L++N 
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYL-NLSNNNFTGSIPR--GSIPNLETLDLSNNM 151

Query: 302 FR-EIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLP 360
              EIP  +G+  +LK L L  N L G +   + NL      TSL +L L SN++ G +P
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL------TSLEFLTLASNQLVGQIP 205

Query: 361 -NFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTI 419
              G   SLK + +  N L+G I   +G L  L  L L  N+L G I  + L NL NL  
Sbjct: 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQY 264

Query: 420 LYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTV 479
           L+L  N L+       IPP   S   L                   +SLD+S++ +S  +
Sbjct: 265 LFLYQNKLS-----GPIPPSIFSLQKL-------------------ISLDLSDNSLSGEI 300

Query: 480 PNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFL 539
           P     Q  NL   +L +N   GK+P   +   P    + + SN+F G IP+        
Sbjct: 301 PELVI-QLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPK-------- 350

Query: 540 NLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKI 599
           NL K+              + L  +DLS N L+G +P+      +L  L L +NS  G+I
Sbjct: 351 NLGKH--------------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396

Query: 600 PDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLV 659
           P S+G  ++L+ + L +N  +GELPS FT    +  +D+  N L G I +   + + +L 
Sbjct: 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD-MPSLQ 455

Query: 660 VLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISN 719
           +LSL  NKF G +P        ++ LDLS N  SG +P+   + + +             
Sbjct: 456 MLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQ----------- 503

Query: 720 YYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLA 779
                                                   L LS NKL GE+P+E+    
Sbjct: 504 ----------------------------------------LKLSENKLSGEIPDELSSCK 523

Query: 780 GLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNL 839
            L++L+LS N L+GQI     ++  L  LDLS+NQ  G IP +L  +  L  +++S+N+L
Sbjct: 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Query: 840 SGKIPSGTQLQSFSTSMYAGNE-LCG 864
            G +PS     + + S  AGN  LCG
Sbjct: 584 HGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  195 bits (496), Expect = 3e-51
 Identities = 184/596 (30%), Positives = 269/596 (45%), Gaps = 113/596 (18%)

Query: 264 SSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYN 323
           +S+ V  I+L    + G I  A   +P + T+ L++NQ                      
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ---------------------- 104

Query: 324 TLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTIN 383
            L G + + I   S     +SL +L L +N  TGS+P  G   +L+ L ++NN L+G I 
Sbjct: 105 -LSGPIPDDIFTTS-----SSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIP 157

Query: 384 KSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQ 443
             +G    L+ L L  N L G I    L+NL++L  L LA N L  +   +         
Sbjct: 158 NDIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQIPRE--------- 207

Query: 444 VNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGK 503
             LG  K                                      +L +  L  N + G+
Sbjct: 208 --LGQMK--------------------------------------SLKWIYLGYNNLSGE 227

Query: 504 LPN----LSSRFHPYRPGIDISSNQFEGPIPQLPLNAS---FLNLSKNKFSGSISFLCSI 556
           +P     L+S  H     +D+  N   GPIP    N     +L L +NK SG I    SI
Sbjct: 228 IPYEIGGLTSLNH-----LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP--PSI 280

Query: 557 TG-HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLY 615
               KL  +DLS+N LSG +P+   Q  +L IL+L +N+F GKIP ++  L  LQ L L+
Sbjct: 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340

Query: 616 NNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLV---NLVVLSLKSNKFNGSI 672
           +N+ +GE+P      + LT++DL  N L+GEIP    EGL    NL  L L SN   G I
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP----EGLCSSGNLFKLILFSNSLEGEI 396

Query: 673 PLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSL----AYDS 728
           P  L    +++ + L  N+ SG +P  F     +     SN  L     +      +   
Sbjct: 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456

Query: 729 LKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSR 788
           L   ++ F   +    GS+         ++ LDLS N+  G VP ++  L+ L+ L LS 
Sbjct: 457 LSLARNKFFGGLPDSFGSKR--------LENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 789 NTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIP 844
           N L+G+I  ++   K L  LDLS NQ  G IP+S S++  LS +DLS N LSG+IP
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.8 bits (233), Expect = 2e-19
 Identities = 73/235 (31%), Positives = 107/235 (45%), Gaps = 53/235 (22%)

Query: 611 SLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNG 670
           S+ L    ++G++ S       +  ++L  N LSG IP  I     +L  L+L +N F G
Sbjct: 73  SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG 132

Query: 671 SIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLK 730
           SIP     + N++ LDLS+N +SG IP    +F        S+L                
Sbjct: 133 SIPRG--SIPNLETLDLSNNMLSGEIPNDIGSF--------SSL---------------- 166

Query: 731 TTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNT 790
                                      K+LDL  N L G++P  + +L  L  L L+ N 
Sbjct: 167 ---------------------------KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199

Query: 791 LTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845
           L GQI  ++GQ+KSL ++ L  N   G IP  +  L+ L+ +DL YNNL+G IPS
Sbjct: 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 89.1 bits (221), Expect = 6e-18
 Identities = 72/252 (28%), Positives = 109/252 (43%), Gaps = 59/252 (23%)

Query: 594 SFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGE 653
           SF   I D + +L N  S    +  +         N S++  +DL    +SG+I + I  
Sbjct: 36  SFKSSINDPLKYLSNWNS----SADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIF- 90

Query: 654 GLVNLVVLSLKSNKFNGSIPLQLCHLA-NVQILDLSSNNISGIIPKCFNNFTAMTHEKGS 712
            L  +  ++L +N+ +G IP  +   + +++ L+LS+NN +G IP+              
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS------------ 138

Query: 713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVP 772
               I N  T                                     LDLS+N L GE+P
Sbjct: 139 ----IPNLET-------------------------------------LDLSNNMLSGEIP 157

Query: 773 EEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVM 832
            +I   + L  L+L  N L G+I   +  L SL+FL L+ NQ  G IP  L Q+  L  +
Sbjct: 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217

Query: 833 DLSYNNLSGKIP 844
            L YNNLSG+IP
Sbjct: 218 YLGYNNLSGEIP 229

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 84.9 bits (210), Expect = 9e-17
 Identities = 54/131 (41%), Positives = 81/131 (61%), Gaps = 9/131 (6%)

Query: 743 WKGSQYEYQSTLG--LVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIG 800
           W G+  ++ ST G   +  L L +  L G +P +I  L  L ++NLS N++ G I P +G
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 801 QLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS--GTQL---QSFSTS 855
            + SL+ LDLS N F GSIP SL QL+ L +++L+ N+LSG++P+  G +L    SF+ +
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523

Query: 856 MYAGNELCGLP 866
             AG  LCG+P
Sbjct: 524 DNAG--LCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.1 bits (169), Expect = 6e-12
 Identities = 31/92 (33%), Positives = 49/92 (53%)

Query: 561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT 620
           +D + L N  L G +P+  S+   L  +NL+ NS  G IP S+G + +L+ L L  N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 621 GELPSFFTNGSQLTLMDLGKNGLSGEIPTWIG 652
           G +P      + L +++L  N LSG +P  +G
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 3e-11
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 577 DCWSQFDSLA------ILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNG 630
           DC  QFDS         L L N    G IP+ I  L++LQS++L  N + G +P    + 
Sbjct: 408 DC--QFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI 465

Query: 631 SQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIP 673
           + L ++DL  N  +G IP  +G+ L +L +L+L  N  +G +P
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.1 bits (151), Expect = 1e-09
 Identities = 27/67 (40%), Positives = 41/67 (61%)

Query: 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR 618
             L  I+LS N + G +P       SL +L+L+ NSF G IP+S+G L +L+ L+L  N 
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 619 LTGELPS 625
           L+G +P+
Sbjct: 502 LSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.6 bits (147), Expect = 3e-09
 Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 12/110 (10%)

Query: 73  WRGVNCS--NRTGH--VYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGS 128
           W G +C   +  G   +  L L       +  L+G I + +  L+HL  ++LSGN+  G+
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLD------NQGLRGFIPNDISKLRHLQSINLSGNSIRGN 457

Query: 129 SIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGE 178
            IP  +GS++ L  L LS   F G IP  LG L+ L++L++  NSL SG 
Sbjct: 458 -IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL-SGR 505

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 56/228 (24%), Positives = 95/228 (41%), Gaps = 38/228 (16%)

Query: 282 IPEAFGHMPSLNTLFLASNQFREIPKS-------LGNMCNLKSLTLSYNTLRGDLSEIIQ 334
           +  A    PSL  L L+ N+   IP+        L   C L+ L LS N L  D   +++
Sbjct: 43  LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102

Query: 335 NLSDGCTKTSLAWLFLDSNE--------ITGSLPNFGGFSSLKRLSIANNRLNGTINKSV 386
           +L      +SL  L L++N         +   L +     +L++L +  NRL G   +++
Sbjct: 103 SLL---RSSSLQELKLNNNGLGDRGLRLLAKGLKDLP--PALEKLVLGRNRLEGASCEAL 157

Query: 387 GQLV----KLESLFLHNNSLRG----VISEAFLSNLSNLTILYLADNSLTLE----FSHD 434
            + +     L+ L L NN +       ++E   +N  NL +L L +N LT E     +  
Sbjct: 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAET 216

Query: 435 WIPPFQLSQVNLGSCKIGPRFPKWLRNQN-----QILSLDISNSGISD 477
                 L  +NLG   +       L +        +L+L +S + I+D
Sbjct: 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 37 IDEEREALLAFKQGLV-DESGILSSWGREDEKRDCCGWRGVNCS 79
          ++++R+ALLAFK  L  D SG LSSW       D C W GV C 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSS--SDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 2e-06
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 7/107 (6%)

Query: 267 LVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFR-EIPKSLGNMCNLKSLTLSYNTL 325
            ++ + L +  L+G IP     +  L ++ L+ N  R  IP SLG++ +L+ L LSYN+ 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 326 RGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLS 372
            G + E +  L      TSL  L L+ N ++G +P   G   L R S
Sbjct: 479 NGSIPESLGQL------TSLRILNLNGNSLSGRVPAALGGRLLHRAS 519

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.1 bits (122), Expect = 2e-06
 Identities = 63/262 (24%), Positives = 109/262 (41%), Gaps = 13/262 (4%)

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
              L+S   +  L    +L+ L    S     +     +S+L  L  L  +  D      
Sbjct: 71  SLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITD 130

Query: 231 SSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMP 290
              L     ++L+ + +  N +   +   L N+  NL  L +L  N L   +P+   ++ 
Sbjct: 131 IPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLP-NLKNL-DLSFNDLS-DLPKLLSNLS 186

Query: 291 SLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFL 350
           +LN L L+ N+  ++P  +  +  L+ L LS N        II+ LS      +L+ L L
Sbjct: 187 NLNNLDLSGNKISDLPPEIELLSALEELDLSNN-------SIIELLSSLSNLKNLSGLEL 239

Query: 351 DSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAF 410
            +N++     + G  S+L+ L ++NN++  +   S+G L  L  L L  NSL   +    
Sbjct: 240 SNNKLEDLPESIGNLSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLSNALPLIA 297

Query: 411 LSNLSNLTILYLADNSLTLEFS 432
           L  L    +L L      LE  
Sbjct: 298 LLLLLLELLLNLLLTLKALELK 319

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 2e-05
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 7/110 (6%)

Query: 318 LTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLP-NFGGFSSLKRLSIANN 376
           L L    LRG +   I  L        L  + L  N I G++P + G  +SL+ L ++ N
Sbjct: 423 LGLDNQGLRGFIPNDISKLR------HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN 476

Query: 377 RLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNS 426
             NG+I +S+GQL  L  L L+ NSL G +  A    L +       DN+
Sbjct: 477 SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 66/263 (25%), Positives = 92/263 (34%), Gaps = 55/263 (20%)

Query: 556 ITGHKLDYIDLSNN----LLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLK---- 607
             G  L  +DLS+N       G L     +  SL  L L NN     + D    L     
Sbjct: 78  TKGCGLQELDLSDNALGPDGCGVLESL-LRSSSLQELKLNNNG----LGDRGLRLLAKGL 132

Query: 608 -----NLQSLSLYNNRLTGE----LPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGL--- 655
                 L+ L L  NRL G     L         L  ++L  NG+       + EGL   
Sbjct: 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN 192

Query: 656 VNLVVLSLKSNKFN--GSIPLQ--LCHLANVQILDLSSNNIS--GIIPKCFNNFTAMTHE 709
            NL VL L +N     G+  L   L  L ++++L+L  NN++  G         +A+   
Sbjct: 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA----SALLSP 248

Query: 710 KGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGG 769
             S LTL      SL+ + +       D           E +S    +  LDL  NK G 
Sbjct: 249 NISLLTL------SLSCNDIT------DDGAKDLAEVLAEKES----LLELDLRGNKFG- 291

Query: 770 EVPEEIMDLAGLIALNLSRNTLT 792
              EE   L     L       +
Sbjct: 292 ---EEGAQLLAESLLEPGNELES 311

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 4e-05
 Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 53/157 (33%)

Query: 448 SCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNL 507
            C+      KW      I  L + N G+   +PN   ++  +L   NLS N I+G +P  
Sbjct: 408 DCQFDSTKGKWF-----IDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIP-- 459

Query: 508 SSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLS 567
                                        S          GSI+         L+ +DLS
Sbjct: 460 ----------------------------PSL---------GSIT--------SLEVLDLS 474

Query: 568 NNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIG 604
            N  +G +P+   Q  SL ILNL  NS  G++P ++G
Sbjct: 475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.1 bits (109), Expect = 6e-05
 Identities = 77/274 (28%), Positives = 115/274 (41%), Gaps = 26/274 (9%)

Query: 107 SSLLILQHLTYLDLSGNNFSGSSIPEFIGSL-SKLSYLGLSNTEFAGPIPLQLGNLSRLQ 165
           S LL L +LT LDL  NN   + IP  IG L S L  L LS+ +    +P  L NL  L+
Sbjct: 110 SELLELTNLTSLDLDNNNI--TDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLK 166

Query: 166 VLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDL 225
            LD+ FN L     L  LS+LS+L  LDLS + +S     +++LS L+ L        +L
Sbjct: 167 NLDLSFNDLSDLPKL--LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL 224

Query: 226 PPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEA 285
             ++ +    L + + LE+      +L +SI         NL  L  L  +  Q S   +
Sbjct: 225 LSSLSN----LKNLSGLELSNNKLEDLPESI--------GNLSNLETLDLSNNQISSISS 272

Query: 286 FGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSL 345
            G + +L  L L+ N        +  +  L  L L+          +     +    + L
Sbjct: 273 LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN--------LLLTLKALELKLNSIL 324

Query: 346 AWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLN 379
               + SN  T S        SL  L   +N L+
Sbjct: 325 LNNNILSNGETSSPEALSILESLNNLWTLDNALD 358

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.7 bits (108), Expect = 9e-05
 Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 18/223 (8%)

Query: 104 TISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSR 163
           ++ S L  L +L  LDLS N+   S +P+ + +LS L+ L LS  + +  +P ++  LS 
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDL--SDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSA 210

Query: 164 LQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISC 223
           L+ LD+  NS+I    L  LS+L +L  L+LS + L      +  LS L++L        
Sbjct: 211 LEELDLSNNSIIE--LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS 268

Query: 224 DLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIP 283
            +          L S T+L  + + GN+L++   P +  +   L  L+NL        + 
Sbjct: 269 SIS--------SLGSLTNLRELDLSGNSLSN-ALPLIALLLLLLELLLNLLLTLKALELK 319

Query: 284 EAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLR 326
                        + SN     P++L  + +L +L    N L 
Sbjct: 320 LNSIL----LNNNILSNGETSSPEALSILESLNNLWTLDNALD 358

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 101 LKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLG 159
           ++G I  SL  +  L  LDLS N+F+GS IPE +G L+ L  L L+    +G +P  LG
Sbjct: 454 IRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 86/297 (28%), Positives = 122/297 (41%), Gaps = 42/297 (14%)

Query: 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFG--KIPDSIGFLKNLQSLSLYN 616
                ++LS+N L             L  L+L + S        +++  L  L SL L  
Sbjct: 47  VNRLALNLSSNTLLLLPSS----LSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNL 102

Query: 617 NRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQL 676
           NRL     S     + LT +DL  N ++ +IP  IG    NL  L L  NK   S+P  L
Sbjct: 103 NRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLPSPL 159

Query: 677 CHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYF 736
            +L N++ LDLS N++S +     N          +NL L  N  + L  +    +    
Sbjct: 160 RNLPNLKNLDLSFNDLSDLPKLLSNL------SNLNNLDLSGNKISDLPPEIELLSAL-- 211

Query: 737 DKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQIT 796
                                + LDLS+N +  E+   + +L  L  L LS N L     
Sbjct: 212 ---------------------EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPE 249

Query: 797 PKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFS 853
             IG L +L+ LDLS NQ   S  SSL  L+ L  +DLS N+LS  +P    L    
Sbjct: 250 S-IGNLSNLETLDLSNNQ--ISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLL 303

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 367 SLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNS 426
           +LK L ++NNRL    + +   L  L+ L L  N+L  +  EAF S L +L  L L+ N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAF-SGLPSLRSLDLSGNN 59

Query: 427 L 427
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 3e-04
 Identities = 60/203 (29%), Positives = 85/203 (41%), Gaps = 18/203 (8%)

Query: 105 ISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRL 164
           +   L  L +L  LDLSGN  S   +P  I  LS L  L LSN      +   L NL  L
Sbjct: 178 LPKLLSNLSNLNNLDLSGNKIS--DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL 234

Query: 165 QVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCD 224
             L++  N L   +  E + +LS+L  LDLS + +S  S+    L  L +L+ L L    
Sbjct: 235 SGLELSNNKLE--DLPESIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNS 288

Query: 225 LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE 284
           L   +P   L L     L  +++    L          +  N + L N   +  + S PE
Sbjct: 289 LSNALPLIALLLLLLELLLNLLLTLKALE---------LKLNSILLNNNILSNGETSSPE 339

Query: 285 AFGHMPSLNTLFLASNQFREIPK 307
           A   + SLN L+   N   E   
Sbjct: 340 ALSILESLNNLWTLDNALDESNL 362

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 5e-04
 Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 51/140 (36%)

Query: 661 LSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNY 720
           L L +    G IP  +  L ++Q ++LS N+I G IP    + T++              
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE------------- 469

Query: 721 YTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAG 780
                                                 +LDLS N   G +PE +  L  
Sbjct: 470 --------------------------------------VLDLSYNSFNGSIPESLGQLTS 491

Query: 781 LIALNLSRNTLTGQITPKIG 800
           L  LNL+ N+L+G++   +G
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 5e-04
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 636 MDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGI 695
           + L   GL G IP  I + L +L  ++L  N   G+IP  L  + ++++LDLS N+ +G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 696 IPKCFNNFTAM 706
           IP+     T++
Sbjct: 482 IPESLGQLTSL 492

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 163 RLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLIS 222
            L+ LD+  N L    +      L +L  LDLS +NL+  S   +  S L SL++L L  
Sbjct: 1   NLKSLDLSNNRLTVIPD-GAFKGLPNLKVLDLSGNNLTSIS--PEAFSGLPSLRSLDLSG 57

Query: 223 CDL 225
            +L
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 139 KLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSN 198
            L  L LSN             L  L+VLD+  N+L S    E  S L SL  LDLS +N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISP-EAFSGLPSLRSLDLSGNN 59

Query: 199 L 199
           L
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	956
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
PLN03150	623	hypothetical protein; Provisional	99.56
PLN03150	623	hypothetical protein; Provisional	99.47
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.38
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.24
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.23
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.04
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.03
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.98
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.94
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.94
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.84
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.72
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.7
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.67
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.66
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.57
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.5
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.49
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.37
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.31
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.23
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.21
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.04
KOG4341	483	consensus F-box protein containing LRR [General fu	98.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.93
PRK15386	426	type III secretion protein GogB; Provisional	97.84
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.83
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.8
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.7
KOG4341	483	consensus F-box protein containing LRR [General fu	97.67
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.51
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.46
PRK15386	426	type III secretion protein GogB; Provisional	97.46
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.46
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.44
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.1
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.08
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.77
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.25
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.11
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.68
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.19
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.16
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.69
KOG4308	478	consensus LRR-containing protein [Function unknown	93.33
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.09
KOG4308	478	consensus LRR-containing protein [Function unknown	91.61
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.03
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.96
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.19
smart00370	26	LRR Leucine-rich repeats, outliers.	90.19
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.94
smart00370	26	LRR Leucine-rich repeats, outliers.	87.02
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.02
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.47

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.4e-70  Score=688.30  Aligned_cols=581  Identities=37%  Similarity=0.578  Sum_probs=447.3

Q ss_pred             CHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCCccccceeecCCCCcEEEEECCCCCCCCCCCCccccccccccccCCC
Q 046848           37 IDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLT  116 (956)
Q Consensus        37 ~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~  116 (956)
                      .++|++||++||+++.+|.+.+.+|.   ...+||.|.||+|+. .++|+.|++++      +.+.|.+++++..+++|+
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~------~~i~~~~~~~~~~l~~L~   96 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG------KNISGKISSAIFRLPYIQ   96 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC------CCccccCChHHhCCCCCC
Confidence            46899999999999988877889997   467899999999975 57999999998      678888888889999999


Q ss_pred             EEeCCCCCCCCCCCCcccc-CCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcEEecc
Q 046848          117 YLDLSGNNFSGSSIPEFIG-SLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLS  195 (956)
Q Consensus       117 ~L~Ls~n~~~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls  195 (956)
                      +|+|++|.+++. +|..+. .+++|++|+|++|++++.+|.  +.+++|++|++++|.+                     
T Consensus        97 ~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~---------------------  152 (968)
T PLN00113         97 TINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML---------------------  152 (968)
T ss_pred             EEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcc---------------------
Confidence            999999988875 787654 888888888888888877764  3345555555554433                     


Q ss_pred             cccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccceEEecc
Q 046848          196 FSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGS  275 (956)
Q Consensus       196 ~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~  275 (956)
                                                                               .+.+|..+..+.+ | ++|++++
T Consensus       153 ---------------------------------------------------------~~~~p~~~~~l~~-L-~~L~L~~  173 (968)
T PLN00113        153 ---------------------------------------------------------SGEIPNDIGSFSS-L-KVLDLGG  173 (968)
T ss_pred             ---------------------------------------------------------cccCChHHhcCCC-C-CEEECcc
Confidence                                                                     2222222333333 4 5555555


Q ss_pred             cccccCCCcccCCCCCCcEEECCCCcCcc-ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCc
Q 046848          276 NQLQGSIPEAFGHMPSLNTLFLASNQFRE-IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNE  354 (956)
Q Consensus       276 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~  354 (956)
                      |.+.+.+|..+.++++|++|++++|.+.+ +|..++++++|++|++++|.+++.+|..+..++      +|++|++++|.
T Consensus       174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~------~L~~L~L~~n~  247 (968)
T PLN00113        174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT------SLNHLDLVYNN  247 (968)
T ss_pred             CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC------CCCEEECcCce
Confidence            55555566666777777777777777766 677777777777777777777777777666665      66666666666


Q ss_pred             CcccCCC-CCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccC
Q 046848          355 ITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSH  433 (956)
Q Consensus       355 l~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  433 (956)
                      +++..|. ++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.. +.++++|++|++++|.+      
T Consensus       248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~------  320 (968)
T PLN00113        248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNF------  320 (968)
T ss_pred             eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCcc------
Confidence            6655443 555556666666666555555555555555555555555555544442 34444444444444333      


Q ss_pred             CcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcC
Q 046848          434 DWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHP  513 (956)
Q Consensus       434 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~  513 (956)
                                        .+..|.++..+++|+.|++++|.+.+.+|..+.. .                          
T Consensus       321 ------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~--------------------------  355 (968)
T PLN00113        321 ------------------TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-H--------------------------  355 (968)
T ss_pred             ------------------CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-C--------------------------
Confidence                              3344444555555555555555544443332211 0                          


Q ss_pred             CCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCC
Q 046848          514 YRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANN  593 (956)
Q Consensus       514 l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  593 (956)
                                                                   ++|+.|++++|++++.+|..+..+++|+.|++++|
T Consensus       356 ---------------------------------------------~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  390 (968)
T PLN00113        356 ---------------------------------------------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN  390 (968)
T ss_pred             ---------------------------------------------CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence                                                         56778888888888888888888888999999999


Q ss_pred             cccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCC
Q 046848          594 SFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIP  673 (956)
Q Consensus       594 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p  673 (956)
                      ++.+.+|..+..+++|+.|++++|++++.+|..|..++.|+.|++++|++++.+|..+. .+++|++|++++|++.+.+|
T Consensus       391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p  469 (968)
T PLN00113        391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLP  469 (968)
T ss_pred             EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecC
Confidence            99989999899999999999999999999999999999999999999999988888776 68999999999999998888


Q ss_pred             ccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceeccc
Q 046848          674 LQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQST  753 (956)
Q Consensus       674 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  753 (956)
                      ..+ ..++|+.|++++|++++.+|..+.+++.|                                               
T Consensus       470 ~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L-----------------------------------------------  501 (968)
T PLN00113        470 DSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL-----------------------------------------------  501 (968)
T ss_pred             ccc-ccccceEEECcCCccCCccChhhhhhhcc-----------------------------------------------
Confidence            765 45899999999999999999888877666                                               


Q ss_pred             ccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEE
Q 046848          754 LGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMD  833 (956)
Q Consensus       754 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~  833 (956)
                          +.|+|++|++.+.+|..+.++++|++|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+..+++|+.++
T Consensus       502 ----~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~  577 (968)
T PLN00113        502 ----MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN  577 (968)
T ss_pred             ----CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence                8899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCcceecCCCCCcCCccccccccCC-CCCCCC
Q 046848          834 LSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCGLP  866 (956)
Q Consensus       834 ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~  866 (956)
                      +++|+++|.+|..+++.++...++.|| .+||.+
T Consensus       578 ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        578 ISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            999999999999999999999999999 899864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.8e-56  Score=559.12  Aligned_cols=462  Identities=35%  Similarity=0.574  Sum_probs=330.4

Q ss_pred             ceEEecccccccCCCcccCCCCCCcEEECCCCcCcc-ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCE
Q 046848          269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE-IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAW  347 (956)
Q Consensus       269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~  347 (956)
                      ++|++++|.+++.+|.  +.+++|++|++++|.+++ +|..++++++|++|++++|.+.+.+|..+.+++      +|++
T Consensus       121 ~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~------~L~~  192 (968)
T PLN00113        121 RYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT------SLEF  192 (968)
T ss_pred             CEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCc------CCCe
Confidence            4444444444433332  233444444444444443 444444444455555544444444444444444      4444


Q ss_pred             EEccCCcCcccCCC-CCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCc
Q 046848          348 LFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNS  426 (956)
Q Consensus       348 L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  426 (956)
                      |++++|.+++.+|. ++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|.. +.++++|++|++++|.
T Consensus       193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~  271 (968)
T PLN00113        193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNK  271 (968)
T ss_pred             eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCe
Confidence            44444444443333 444444444444444444444444445555555555555444444432 3444444444444444


Q ss_pred             ccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCC
Q 046848          427 LTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPN  506 (956)
Q Consensus       427 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~  506 (956)
                      +                        .+..|..+.++++|++|++++|.+.+.+|..+. .+++|++|++++|.+++.+|.
T Consensus       272 l------------------------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~  326 (968)
T PLN00113        272 L------------------------SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHLFSNNFTGKIPV  326 (968)
T ss_pred             e------------------------eccCchhHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEECCCCccCCcCCh
Confidence            4                        344455555555555555555555555554443 234555555555555544332


Q ss_pred             CCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCC
Q 046848          507 LSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLA  586 (956)
Q Consensus       507 ~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  586 (956)
                      .+.                                             ..  ++|+.|++++|.+++.+|..++.+++|+
T Consensus       327 ~~~---------------------------------------------~l--~~L~~L~L~~n~l~~~~p~~l~~~~~L~  359 (968)
T PLN00113        327 ALT---------------------------------------------SL--PRLQVLQLWSNKFSGEIPKNLGKHNNLT  359 (968)
T ss_pred             hHh---------------------------------------------cC--CCCCEEECcCCCCcCcCChHHhCCCCCc
Confidence            211                                             00  6788999999999999999999999999


Q ss_pred             EEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCC
Q 046848          587 ILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSN  666 (956)
Q Consensus       587 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N  666 (956)
                      .|++++|++.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+. .+++|+.|++++|
T Consensus       360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N  438 (968)
T PLN00113        360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNN  438 (968)
T ss_pred             EEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999887 7999999999999


Q ss_pred             cccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCc
Q 046848          667 KFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGS  746 (956)
Q Consensus       667 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  746 (956)
                      ++++.+|..+..+++|+.|++++|++.+.+|..+.. +                                          
T Consensus       439 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-~------------------------------------------  475 (968)
T PLN00113        439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-K------------------------------------------  475 (968)
T ss_pred             cccCccChhhccCCCCcEEECcCceeeeecCccccc-c------------------------------------------
Confidence            999999999999999999999999999888765421 2                                          


Q ss_pred             cceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCC
Q 046848          747 QYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQL  826 (956)
Q Consensus       747 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  826 (956)
                               .|+.||+++|++++.+|..+.++++|+.|+|++|++++.+|+.++.+++|++|+|++|+++|.+|..+..+
T Consensus       476 ---------~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  546 (968)
T PLN00113        476 ---------RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM  546 (968)
T ss_pred             ---------cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence                     34899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEECcCCcceecCCCC-CcCCccccccccCCCCCC
Q 046848          827 SRLSVMDLSYNNLSGKIPSG-TQLQSFSTSMYAGNELCG  864 (956)
Q Consensus       827 ~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~l~~  864 (956)
                      ++|+.||+++|+++|.+|.. ..+..+....+.+|.+.|
T Consensus       547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             ccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            99999999999999999975 344556666677785554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-37  Score=324.46  Aligned_cols=367  Identities=23%  Similarity=0.263  Sum_probs=325.1

Q ss_pred             ceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEE
Q 046848          269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWL  348 (956)
Q Consensus       269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L  348 (956)
                      +.|++++|.+...-+..|.++++|+++++..|.++.||.......+|+.|+|.+|.++..-.+.+..++      .|+.|
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~------alrsl  154 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP------ALRSL  154 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHh------hhhhh
Confidence            679999999999888999999999999999999999998777778899999999999998889999888      99999


Q ss_pred             EccCCcCcccCC-CCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcc
Q 046848          349 FLDSNEITGSLP-NFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSL  427 (956)
Q Consensus       349 ~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  427 (956)
                      ||+.|.++.... .|..-.++++|+|++|.|+..-...|..+.+|..|.|+.|+++..++. .|.++++|+.|+|..|.+
T Consensus       155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r-~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQR-SFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHH-Hhhhcchhhhhhccccce
Confidence            999999986543 377888999999999999988888999999999999999999977665 588999999999999999


Q ss_pred             cccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCC
Q 046848          428 TLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNL  507 (956)
Q Consensus       428 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  507 (956)
                      .......|.++++|+.|.+..|.+.......|..+.++++|+|+.|+++..-..|+++ +..|+.|++++|.|...    
T Consensus       234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg-Lt~L~~L~lS~NaI~ri----  308 (873)
T KOG4194|consen  234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG-LTSLEQLDLSYNAIQRI----  308 (873)
T ss_pred             eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc-cchhhhhccchhhhhee----
Confidence            9888899999999999999999999888889999999999999999998777777765 45888888888887722    


Q ss_pred             CCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCE
Q 046848          508 SSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAI  587 (956)
Q Consensus       508 ~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  587 (956)
                                 ....-.|                                +++|++|+|++|+++...+..|..+..|++
T Consensus       309 -----------h~d~Wsf--------------------------------tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~  345 (873)
T KOG4194|consen  309 -----------HIDSWSF--------------------------------TQKLKELDLSSNRITRLDEGSFRVLSQLEE  345 (873)
T ss_pred             -----------ecchhhh--------------------------------cccceeEeccccccccCChhHHHHHHHhhh
Confidence                       2211111                                178999999999999888899999999999


Q ss_pred             EEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCc---cccCCCCCcEEecCCccccccCChhHhhcCccCcEEEcc
Q 046848          588 LNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPS---FFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLK  664 (956)
Q Consensus       588 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~  664 (956)
                      |+|++|.+...-...|..+++|+.|||++|.++..+.+   .|.++++|+.|++.+|++. .||...++++..|+.|||.
T Consensus       346 LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~  424 (873)
T KOG4194|consen  346 LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLG  424 (873)
T ss_pred             hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCC
Confidence            99999999877777899999999999999999977654   5888999999999999999 9999999999999999999


Q ss_pred             CCcccccCCccccCCCCcCEEeccCCcC
Q 046848          665 SNKFNGSIPLQLCHLANVQILDLSSNNI  692 (956)
Q Consensus       665 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  692 (956)
                      +|.|..+-|.+|..+ .|+.|-+..-.|
T Consensus       425 ~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  425 DNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             CCcceeecccccccc-hhhhhhhcccce
Confidence            999998889999988 899888765433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-36  Score=319.46  Aligned_cols=398  Identities=22%  Similarity=0.227  Sum_probs=293.8

Q ss_pred             CcEEECCCCcCcccc-cccc-CC-CCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCC-C
Q 046848          292 LNTLFLASNQFREIP-KSLG-NM-CNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFS-S  367 (956)
Q Consensus       292 L~~L~Ls~n~l~~ip-~~l~-~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~-~  367 (956)
                      -..|+.+++.+..+. ..+. -+ +.-+.|++++|++....+..|.+++      +|+.+++.+|.++ .+|.++... +
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~------nLq~v~l~~N~Lt-~IP~f~~~sgh  126 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLP------NLQEVNLNKNELT-RIPRFGHESGH  126 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCC------cceeeeeccchhh-hcccccccccc
Confidence            345566666665531 1111 11 2456799999999988888899988      9999999999888 455555544 5


Q ss_pred             CCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcC
Q 046848          368 LKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLG  447 (956)
Q Consensus       368 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~  447 (956)
                      |+.|+|.+|.|+..-...+..++.|+.|||+.|.|+.+... .|..-.++++|+|++|.|+......|..+.+|..|.|+
T Consensus       127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~-sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKP-SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCC-CCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence            99999999999888788888899999999999998866554 35666788889999988888888888777777788888


Q ss_pred             CCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeee
Q 046848          448 SCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEG  527 (956)
Q Consensus       448 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g  527 (956)
                      .|+++...+..|.++++|+.|+|..|+|.-.- ..-+..+                                        
T Consensus       206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive-~ltFqgL----------------------------------------  244 (873)
T KOG4194|consen  206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVE-GLTFQGL----------------------------------------  244 (873)
T ss_pred             cCcccccCHHHhhhcchhhhhhccccceeeeh-hhhhcCc----------------------------------------
Confidence            87777666666777777777666666654110 0000000                                        


Q ss_pred             cCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCC
Q 046848          528 PIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLK  607 (956)
Q Consensus       528 ~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  607 (956)
                                                     ++|+.|.+..|++...-...|-.+.++++|+|+.|++...-..++.+++
T Consensus       245 -------------------------------~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt  293 (873)
T KOG4194|consen  245 -------------------------------PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT  293 (873)
T ss_pred             -------------------------------hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence                                           5677777788888777777888888899999999998877777888899


Q ss_pred             CcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEec
Q 046848          608 NLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDL  687 (956)
Q Consensus       608 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  687 (956)
                      .|+.|++++|.|..+-+++++.+++|++|||++|+++ .+++.-+..+..|++|+|++|++...-...|..+++|++|||
T Consensus       294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL  372 (873)
T KOG4194|consen  294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL  372 (873)
T ss_pred             hhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence            9999999999998888888888889999999999998 777766667888888888888888666667778888888888


Q ss_pred             cCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCC
Q 046848          688 SSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKL  767 (956)
Q Consensus       688 s~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  767 (956)
                      ++|.++..+.+.-                                                                   
T Consensus       373 r~N~ls~~IEDaa-------------------------------------------------------------------  385 (873)
T KOG4194|consen  373 RSNELSWCIEDAA-------------------------------------------------------------------  385 (873)
T ss_pred             cCCeEEEEEecch-------------------------------------------------------------------
Confidence            8888876554321                                                                   


Q ss_pred             CCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecC
Q 046848          768 GGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKI  843 (956)
Q Consensus       768 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  843 (956)
                           ..|..++.|+.|+|.+|++..+.-.+|..+..|+.|||.+|.|-..-|.+|..+ .|+.|-++.-.+-|.|
T Consensus       386 -----~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC  455 (873)
T KOG4194|consen  386 -----VAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC  455 (873)
T ss_pred             -----hhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence                 123445666666666666665445566667777777777777766667777777 6777777766666664

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5.8e-39  Score=324.73  Aligned_cols=176  Identities=28%  Similarity=0.472  Sum_probs=119.7

Q ss_pred             CCCCEEEcCCCcccccCCCCcCCCC---CcCEEEccCceeeeeCCccccCCCCCcE-EecCCccccccCChhHhhcCccC
Q 046848          583 DSLAILNLANNSFFGKIPDSIGFLK---NLQSLSLYNNRLTGELPSFFTNGSQLTL-MDLGKNGLSGEIPTWIGEGLVNL  658 (956)
Q Consensus       583 ~~L~~L~Ls~N~l~~~~p~~~~~l~---~L~~L~L~~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~ip~~~~~~l~~L  658 (956)
                      .+.+.|++++-+++ .+|+....-.   -....+++.|++. ++|..+..+..+.+ +++++|.++ .+|..+. .+++|
T Consensus       362 i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~-~l~kL  437 (565)
T KOG0472|consen  362 ITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELS-QLQKL  437 (565)
T ss_pred             hhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHH-hhhcc
Confidence            34445555555554 3333221111   2455666666665 55555555544433 344555554 6666666 47777


Q ss_pred             cEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccc
Q 046848          659 VVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDK  738 (956)
Q Consensus       659 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  738 (956)
                      ..|+|++|.+. .+|..++.+..||+||+|+|+|. .+|.++..+..+                                
T Consensus       438 t~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l--------------------------------  483 (565)
T KOG0472|consen  438 TFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL--------------------------------  483 (565)
T ss_pred             eeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH--------------------------------
Confidence            78888777776 67777777888888888888775 667666554444                                


Q ss_pred             eeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccC
Q 046848          739 AVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFF  816 (956)
Q Consensus       739 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  816 (956)
                                         +.+-.++|++....|+.+.++.+|..|||.+|.+. .||+.+|++++|+.|++++|++.
T Consensus       484 -------------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  484 -------------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             -------------------HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence                               44556678888667777889999999999999998 78999999999999999999998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=9.5e-39  Score=323.19  Aligned_cols=453  Identities=27%  Similarity=0.389  Sum_probs=273.7

Q ss_pred             ceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEE
Q 046848          269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWL  348 (956)
Q Consensus       269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L  348 (956)
                      ..+.+++|.+.. +.+.+.++..|.+|++++|+++.+|++++.+..++.++.++|++. .+|+.++.+.      ++..+
T Consensus        48 ~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~------~l~~l  119 (565)
T KOG0472|consen   48 QKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLI------SLVKL  119 (565)
T ss_pred             hhhhhccCchhh-ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhh------hhhhh
Confidence            344444444442 223344555555555555555555555555555555555555554 3344444444      55555


Q ss_pred             EccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCccc
Q 046848          349 FLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT  428 (956)
Q Consensus       349 ~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  428 (956)
                      +.++|.+....+.++.+..|+.++..+|+++ ..|..+..+.+|..+++.+|+++...+. ... ++.|+++|...|-++
T Consensus       120 ~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~-m~~L~~ld~~~N~L~  196 (565)
T KOG0472|consen  120 DCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIA-MKRLKHLDCNSNLLE  196 (565)
T ss_pred             hccccceeecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHH-HHHHHhcccchhhhh
Confidence            5555555555555555555555555555555 3444555555555555555555544443 122 555555555555443


Q ss_pred             ccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCC
Q 046848          429 LEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLS  508 (956)
Q Consensus       429 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~  508 (956)
                      . .+.....+.+|..|++..|++. ..| .|..|..|+++.++.|+|. .+|......++++..||+.+|+++       
T Consensus       197 t-lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-------  265 (565)
T KOG0472|consen  197 T-LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-------  265 (565)
T ss_pred             c-CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-------
Confidence            2 2333444444444455555443 233 4555666666666666654 455555555555555555555554       


Q ss_pred             CCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEE
Q 046848          509 SRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAIL  588 (956)
Q Consensus       509 ~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  588 (956)
                                                             ..+..+|..  .+|+.||+|+|.++ ..|..++++ .|+.|
T Consensus       266 ---------------------------------------e~Pde~clL--rsL~rLDlSNN~is-~Lp~sLgnl-hL~~L  302 (565)
T KOG0472|consen  266 ---------------------------------------EVPDEICLL--RSLERLDLSNNDIS-SLPYSLGNL-HLKFL  302 (565)
T ss_pred             ---------------------------------------cCchHHHHh--hhhhhhcccCCccc-cCCcccccc-eeeeh
Confidence                                                   112222222  44555555555555 344455555 55555


Q ss_pred             EcCCCccccc--------------------------------------CCC---CcCCCCCcCEEEccCceeeeeCCc-c
Q 046848          589 NLANNSFFGK--------------------------------------IPD---SIGFLKNLQSLSLYNNRLTGELPS-F  626 (956)
Q Consensus       589 ~Ls~N~l~~~--------------------------------------~p~---~~~~l~~L~~L~L~~N~l~~~~p~-~  626 (956)
                      .+.+|.+..+                                      .+.   ....+.+.+.|++++-+++ .+|+ .
T Consensus       303 ~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEV  381 (565)
T KOG0472|consen  303 ALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEV  381 (565)
T ss_pred             hhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHH
Confidence            5555554210                                      000   1122446677777777777 4444 3


Q ss_pred             ccCC--CCCcEEecCCccccccCChhHhhcCccCcE-EEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhcccc
Q 046848          627 FTNG--SQLTLMDLGKNGLSGEIPTWIGEGLVNLVV-LSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNF  703 (956)
Q Consensus       627 ~~~l--~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~-L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  703 (956)
                      |..-  .-....+++.|++. ++|..+.. +..+.+ +.+++|.+ +.+|..++.+++|..|+|++|.+. .+|..++.+
T Consensus       382 fea~~~~~Vt~VnfskNqL~-elPk~L~~-lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l  457 (565)
T KOG0472|consen  382 FEAAKSEIVTSVNFSKNQLC-ELPKRLVE-LKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSL  457 (565)
T ss_pred             HHHhhhcceEEEecccchHh-hhhhhhHH-HHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhh
Confidence            3221  22667788888887 78877663 554443 44455544 467777888888888888887775 566666655


Q ss_pred             ccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCE
Q 046848          704 TAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIA  783 (956)
Q Consensus       704 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  783 (956)
                      ..|                                                   +.||+|+|+|. .+|..+..+..++.
T Consensus       458 v~L---------------------------------------------------q~LnlS~NrFr-~lP~~~y~lq~lEt  485 (565)
T KOG0472|consen  458 VRL---------------------------------------------------QTLNLSFNRFR-MLPECLYELQTLET  485 (565)
T ss_pred             hhh---------------------------------------------------heecccccccc-cchHHHhhHHHHHH
Confidence            444                                                   89999999998 89999888888888


Q ss_pred             EEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCC
Q 046848          784 LNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSG  846 (956)
Q Consensus       784 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  846 (956)
                      +-.++|++....|..+++|.+|..|||.+|.+. .||..+++|++|++|++++|+|.  .|..
T Consensus       486 llas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  486 LLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH  545 (565)
T ss_pred             HHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence            888889998666666999999999999999998 78899999999999999999998  5543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-35  Score=330.64  Aligned_cols=416  Identities=28%  Similarity=0.384  Sum_probs=294.0

Q ss_pred             ceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEE
Q 046848          269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWL  348 (956)
Q Consensus       269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L  348 (956)
                      +.++++.|.+. ..|....++.+|++|.|.+|.+..+|..+..+++|++|++++|++. .+|..+..+.      .++.+
T Consensus        71 ~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt------~~~~~  142 (1081)
T KOG0618|consen   71 RQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLT------AEEEL  142 (1081)
T ss_pred             hhcccchhhHh-hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCchhHHhhh------HHHHH
Confidence            44555555544 3445566777777888888777778877777888888888888775 5566666665      67777


Q ss_pred             EccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCccc
Q 046848          349 FLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT  428 (956)
Q Consensus       349 ~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  428 (956)
                      ..++|.....   ++... .+.+++..|.+.+.++..+..+..  .|+|++|.+. ..   .+.++.+|+.+....|++.
T Consensus       143 ~~s~N~~~~~---lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn~ls  212 (1081)
T KOG0618|consen  143 AASNNEKIQR---LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERNQLS  212 (1081)
T ss_pred             hhhcchhhhh---hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhcccc
Confidence            7777722211   22222 777778888887777777776666  6888888876 22   2566777777766666554


Q ss_pred             ccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCC
Q 046848          429 LEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLS  508 (956)
Q Consensus       429 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~  508 (956)
                      ...              +.              -+                         +++.|+.++|.++...+.  
T Consensus       213 ~l~--------------~~--------------g~-------------------------~l~~L~a~~n~l~~~~~~--  237 (1081)
T KOG0618|consen  213 ELE--------------IS--------------GP-------------------------SLTALYADHNPLTTLDVH--  237 (1081)
T ss_pred             eEE--------------ec--------------Cc-------------------------chheeeeccCcceeeccc--
Confidence            211              00              12                         333333333333311110  


Q ss_pred             CCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEE
Q 046848          509 SRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAIL  588 (956)
Q Consensus       509 ~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  588 (956)
                                            ..+.+++.+++++|++++....++.+  .+|+.++..+|+++ .+|..+...++|+.|
T Consensus       238 ----------------------p~p~nl~~~dis~n~l~~lp~wi~~~--~nle~l~~n~N~l~-~lp~ri~~~~~L~~l  292 (1081)
T KOG0618|consen  238 ----------------------PVPLNLQYLDISHNNLSNLPEWIGAC--ANLEALNANHNRLV-ALPLRISRITSLVSL  292 (1081)
T ss_pred             ----------------------cccccceeeecchhhhhcchHHHHhc--ccceEecccchhHH-hhHHHHhhhhhHHHH
Confidence                                  01334555555555555555334444  78999999999996 778888888889999


Q ss_pred             EcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCC-CcEEecCCccccccCChhHhhcCccCcEEEccCCc
Q 046848          589 NLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQ-LTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNK  667 (956)
Q Consensus       589 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~  667 (956)
                      ....|.+. -+|.....++.|++|+|..|+|....+..+.-... |+.|+.+.|++. ..|..-.+..+.|+.|++.+|.
T Consensus       293 ~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~  370 (1081)
T KOG0618|consen  293 SAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNH  370 (1081)
T ss_pred             Hhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCc
Confidence            99999988 56777777899999999999988444434444444 788888888887 6775444467789999999999


Q ss_pred             ccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCcc
Q 046848          668 FNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQ  747 (956)
Q Consensus       668 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  747 (956)
                      ++...-..+.+.++|+.|+|++|++.......+.++..|                                         
T Consensus       371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L-----------------------------------------  409 (1081)
T KOG0618|consen  371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL-----------------------------------------  409 (1081)
T ss_pred             ccccchhhhccccceeeeeecccccccCCHHHHhchHHh-----------------------------------------
Confidence            998877788889999999999999975544556665555                                         


Q ss_pred             ceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCC-cccccCC
Q 046848          748 YEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSI-PSSLSQL  826 (956)
Q Consensus       748 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l  826 (956)
                                +.|+||+|+++ .+|+++..+..|++|...+|++. ..| ++.++++|+.+|+|.|+|+... |.... -
T Consensus       410 ----------eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~  475 (1081)
T KOG0618|consen  410 ----------EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-S  475 (1081)
T ss_pred             ----------HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-C
Confidence                      88999999999 78899999999999999999998 566 8999999999999999997543 44433 3


Q ss_pred             CCCCeEECcCCcc
Q 046848          827 SRLSVMDLSYNNL  839 (956)
Q Consensus       827 ~~L~~L~ls~N~l  839 (956)
                      ++|++||+++|..
T Consensus       476 p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  476 PNLKYLDLSGNTR  488 (1081)
T ss_pred             cccceeeccCCcc
Confidence            7899999999973

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=8.2e-35  Score=324.22  Aligned_cols=461  Identities=28%  Similarity=0.337  Sum_probs=316.0

Q ss_pred             CcEEECCCCcCccccc-cccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCCCCCE
Q 046848          292 LNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKR  370 (956)
Q Consensus       292 L~~L~Ls~n~l~~ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~  370 (956)
                      ++.|+++.|.+-..|- .....-+|+.||+++|.+. ..|..+..+.      .|+.|+++.|.+.........+.+|++
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~------~L~~ln~s~n~i~~vp~s~~~~~~l~~   95 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLS------HLRQLNLSRNYIRSVPSSCSNMRNLQY   95 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHH------HHhhcccchhhHhhCchhhhhhhcchh
Confidence            4444444444444331 1122223555555544443 2333333333      455555555544433333455555666


Q ss_pred             EEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCC
Q 046848          371 LSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCK  450 (956)
Q Consensus       371 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~  450 (956)
                      |.|.+|.+. ..|..+..+.+|++|+++.|++...+..  +..++.++.+..++|......     +-..++.+++..+.
T Consensus        96 lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~Pl~--i~~lt~~~~~~~s~N~~~~~l-----g~~~ik~~~l~~n~  167 (1081)
T KOG0618|consen   96 LNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGPIPLV--IEVLTAEEELAASNNEKIQRL-----GQTSIKKLDLRLNV  167 (1081)
T ss_pred             heeccchhh-cCchhHHhhhcccccccchhccCCCchh--HHhhhHHHHHhhhcchhhhhh-----ccccchhhhhhhhh
Confidence            666655554 4555666666666666666666543332  455556666666666211111     11125666666666


Q ss_pred             CCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCC
Q 046848          451 IGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIP  530 (956)
Q Consensus       451 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p  530 (956)
                      +.+.++..+..+..  .||+.+|.+. ...   ...+++|+.+....|+++               .+++++        
T Consensus       168 l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls---------------~l~~~g--------  218 (1081)
T KOG0618|consen  168 LGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLS---------------ELEISG--------  218 (1081)
T ss_pred             cccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccc---------------eEEecC--------
Confidence            66666666666655  6888888776 211   123456777777777665               333322        


Q ss_pred             CCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcC
Q 046848          531 QLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQ  610 (956)
Q Consensus       531 ~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  610 (956)
                         .+++.|+.++|.++........   .+|+++|+++|+++ .+|++++.+.+|+.++..+|++. .+|..+...++|+
T Consensus       219 ---~~l~~L~a~~n~l~~~~~~p~p---~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~  290 (1081)
T KOG0618|consen  219 ---PSLTALYADHNPLTTLDVHPVP---LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLV  290 (1081)
T ss_pred             ---cchheeeeccCcceeecccccc---ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHH
Confidence               4677888888888744433332   68999999999999 56799999999999999999996 7888888899999


Q ss_pred             EEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCc-cCcEEEccCCcccccCCccccCCCCcCEEeccC
Q 046848          611 SLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLV-NLVVLSLKSNKFNGSIPLQLCHLANVQILDLSS  689 (956)
Q Consensus       611 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  689 (956)
                      .|++..|.+. .+|......+.|++|||..|++. .+|..++.-+. +|..|+.+.|++....-..=...+.|+.|.+.+
T Consensus       291 ~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan  368 (1081)
T KOG0618|consen  291 SLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN  368 (1081)
T ss_pred             HHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence            9999999999 67777888999999999999998 88887764444 388888999998743322223457899999999


Q ss_pred             CcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCC
Q 046848          690 NNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGG  769 (956)
Q Consensus       690 N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  769 (956)
                      |.++...-..+.+..                                                   +|+.|+|++|+|..
T Consensus       369 N~Ltd~c~p~l~~~~---------------------------------------------------hLKVLhLsyNrL~~  397 (1081)
T KOG0618|consen  369 NHLTDSCFPVLVNFK---------------------------------------------------HLKVLHLSYNRLNS  397 (1081)
T ss_pred             Ccccccchhhhcccc---------------------------------------------------ceeeeeeccccccc
Confidence            999865444444433                                                   34999999999996


Q ss_pred             CCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCccee-cCCCCCc
Q 046848          770 EVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSG-KIPSGTQ  848 (956)
Q Consensus       770 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g-~ip~~~~  848 (956)
                      .....+.++..|++|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..+++|+.+|+|.|+|+- .+|....
T Consensus       398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p  474 (1081)
T KOG0618|consen  398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP  474 (1081)
T ss_pred             CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence            66667899999999999999999 79999999999999999999998 566 78899999999999999964 4554433


Q ss_pred             CCccccccccCC
Q 046848          849 LQSFSTSMYAGN  860 (956)
Q Consensus       849 ~~~~~~~~~~~n  860 (956)
                      ...+....+.||
T Consensus       475 ~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  475 SPNLKYLDLSGN  486 (1081)
T ss_pred             CcccceeeccCC
Confidence            355556667777

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.6e-33  Score=298.96  Aligned_cols=369  Identities=29%  Similarity=0.409  Sum_probs=234.7

Q ss_pred             cccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCc
Q 046848          111 ILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLI  190 (956)
Q Consensus       111 ~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  190 (956)
                      -++..|-.|+++|.++|..+|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|++.  .....+..++.|+
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~--~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI--SVHGELSDLPRLR   81 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH--hhhhhhccchhhH
Confidence            35667788999999997778998889999999999888887 88888888888888888888751  1111222222222


Q ss_pred             EEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccce
Q 046848          191 YLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVEL  270 (956)
Q Consensus       191 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~  270 (956)
                      .+++..|++..                                                    ..               
T Consensus        82 sv~~R~N~LKn----------------------------------------------------sG---------------   94 (1255)
T KOG0444|consen   82 SVIVRDNNLKN----------------------------------------------------SG---------------   94 (1255)
T ss_pred             HHhhhcccccc----------------------------------------------------CC---------------
Confidence            22222222111                                                    11               


Q ss_pred             EEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEc
Q 046848          271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFL  350 (956)
Q Consensus       271 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L  350 (956)
                                 +|..+..+..|..||||+|++.+.|..+..-+++-.|+||+|++.......+-++.      .|-.|||
T Consensus        95 -----------iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt------DLLfLDL  157 (1255)
T KOG0444|consen   95 -----------IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT------DLLFLDL  157 (1255)
T ss_pred             -----------CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH------hHhhhcc
Confidence                       34444455555555555555555555555555555555555555544444444554      5555555


Q ss_pred             cCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCcc-ccCHHhhhCCCCCCEEEcCCCcccc
Q 046848          351 DSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRG-VISEAFLSNLSNLTILYLADNSLTL  429 (956)
Q Consensus       351 s~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~  429 (956)
                      ++|++...+|....+..|++|+|++|.+...-...+..+++|+.|.+++.+-+- -+|. .+..+.+|..+|++.|.+. 
T Consensus       158 S~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp-  235 (1255)
T KOG0444|consen  158 SNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLP-  235 (1255)
T ss_pred             ccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCC-
Confidence            555555555555555666666666666543322333344555555555543221 1111 1334444444444444333 


Q ss_pred             cccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCC
Q 046848          430 EFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSS  509 (956)
Q Consensus       430 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~  509 (956)
                                              ..|+.+.++++|+.|+||+|+|+.                                
T Consensus       236 ------------------------~vPecly~l~~LrrLNLS~N~ite--------------------------------  259 (1255)
T KOG0444|consen  236 ------------------------IVPECLYKLRNLRRLNLSGNKITE--------------------------------  259 (1255)
T ss_pred             ------------------------cchHHHhhhhhhheeccCcCceee--------------------------------
Confidence                                    334444444444444444444331                                


Q ss_pred             CCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEE
Q 046848          510 RFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILN  589 (956)
Q Consensus       510 ~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  589 (956)
                              +.+..                               ...  .+|++|++|.|+++ .+|++++.++.|+.|.
T Consensus       260 --------L~~~~-------------------------------~~W--~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy  297 (1255)
T KOG0444|consen  260 --------LNMTE-------------------------------GEW--ENLETLNLSRNQLT-VLPDAVCKLTKLTKLY  297 (1255)
T ss_pred             --------eeccH-------------------------------HHH--hhhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence                    11100                               000  57888888888888 7899999999999999


Q ss_pred             cCCCccc-ccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcc
Q 046848          590 LANNSFF-GKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKF  668 (956)
Q Consensus       590 Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l  668 (956)
                      +.+|+++ .-+|..++.+.+|+.+..++|.+. ..|++++.|..|+.|.|+.|++. ++|..+- -++.|++||+..|.-
T Consensus       298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH-lL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH-LLPDLKVLDLRENPN  374 (1255)
T ss_pred             hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh-hcCCcceeeccCCcC
Confidence            9999876 457889999999999999999988 88999999999999999999998 8999887 589999999999876


Q ss_pred             c
Q 046848          669 N  669 (956)
Q Consensus       669 ~  669 (956)
                      .
T Consensus       375 L  375 (1255)
T KOG0444|consen  375 L  375 (1255)
T ss_pred             c
Confidence            5

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.6e-33  Score=296.35  Aligned_cols=230  Identities=26%  Similarity=0.391  Sum_probs=183.8

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCccc-ccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEe
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFF-GKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMD  637 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  637 (956)
                      ..|++|+|++|.+.-.--..+..+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|.+. ..|+.+-++.+|+.|+
T Consensus       173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLN  251 (1255)
T KOG0444|consen  173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLN  251 (1255)
T ss_pred             hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheec
Confidence            45777777777665332334556778889999887654 568889999999999999999998 8899999999999999


Q ss_pred             cCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCC-CcChhccccccCcccccCcccc
Q 046848          638 LGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISG-IIPKCFNNFTAMTHEKGSNLTL  716 (956)
Q Consensus       638 Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~~  716 (956)
                      ||+|+|+ ++..... ...+|++|+++.|+++ .+|+.++.++.|+.|.+.+|+++- -+|..++.+..|          
T Consensus       252 LS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L----------  318 (1255)
T KOG0444|consen  252 LSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL----------  318 (1255)
T ss_pred             cCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh----------
Confidence            9999998 7777766 3778999999999998 789999999999999999998873 367777776666          


Q ss_pred             cccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCC
Q 046848          717 ISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQIT  796 (956)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  796 (956)
                                                               +.+..++|.+. ..|+.+..+..|+.|.|++|++. .+|
T Consensus       319 -----------------------------------------evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLP  355 (1255)
T KOG0444|consen  319 -----------------------------------------EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLP  355 (1255)
T ss_pred             -----------------------------------------HHHHhhccccc-cCchhhhhhHHHHHhccccccee-ech
Confidence                                                     67788888887 89999999999999999999998 789


Q ss_pred             ccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCC-----cceecCCC
Q 046848          797 PKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYN-----NLSGKIPS  845 (956)
Q Consensus       797 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N-----~l~g~ip~  845 (956)
                      +.+.-++.|+.|||..|.---..|.--..-++|+.-++..-     ++-|..|.
T Consensus       356 eaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pa  409 (1255)
T KOG0444|consen  356 EAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPA  409 (1255)
T ss_pred             hhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCcc
Confidence            99999999999999999876555533322356666655532     45666554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=1.3e-24  Score=220.96  Aligned_cols=423  Identities=24%  Similarity=0.277  Sum_probs=230.0

Q ss_pred             CCcEEECCCCcCcccc-ccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccC-CcCcccCCC-CCCCCC
Q 046848          291 SLNTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDS-NEITGSLPN-FGGFSS  367 (956)
Q Consensus       291 ~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~-n~l~~~~~~-~~~l~~  367 (956)
                      .-..++|..|+|+.|| .+|..+++|+.||||+|.|+...|..|..+.      +|.+|-+.+ |+|+..... |+++..
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~------~l~~Lvlyg~NkI~~l~k~~F~gL~s  141 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA------SLLSLVLYGNNKITDLPKGAFGGLSS  141 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH------hhhHHHhhcCCchhhhhhhHhhhHHH
Confidence            4566777777777776 4677777777777777777777777777776      555544444 666644333 666666


Q ss_pred             CCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcC
Q 046848          368 LKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLG  447 (956)
Q Consensus       368 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~  447 (956)
                      |+.|.+.-|++.....+.+..+++|..|.+.+|.+..+... .+..+..++.+.+..|.+.......|..     .    
T Consensus       142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~-tf~~l~~i~tlhlA~np~icdCnL~wla-----~----  211 (498)
T KOG4237|consen  142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKG-TFQGLAAIKTLHLAQNPFICDCNLPWLA-----D----  211 (498)
T ss_pred             HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccc-cccchhccchHhhhcCccccccccchhh-----h----
Confidence            66666666666666666666666666666666666543332 3555666666666655533211110000     0    


Q ss_pred             CCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeee
Q 046848          448 SCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEG  527 (956)
Q Consensus       448 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g  527 (956)
                         +....|..++.........+.+.++..+-+..|.....              .+|                      
T Consensus       212 ---~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e--------------sl~----------------------  252 (498)
T KOG4237|consen  212 ---DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE--------------SLP----------------------  252 (498)
T ss_pred             ---HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH--------------hHH----------------------
Confidence               00000111111111111112222222111111111000              000                      


Q ss_pred             cCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCC
Q 046848          528 PIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLK  607 (956)
Q Consensus       528 ~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  607 (956)
                                .--.+.+...+.-|..|....++|+.|++++|++++.-+.+|.+...+++|.|..|++...-...|.++.
T Consensus       253 ----------s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls  322 (498)
T KOG4237|consen  253 ----------SRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLS  322 (498)
T ss_pred             ----------HhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccc
Confidence                      0001122223333444544447888888888888888888888888888888888888766667788888


Q ss_pred             CcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccC-ChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEe
Q 046848          608 NLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEI-PTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILD  686 (956)
Q Consensus       608 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i-p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  686 (956)
                      .|+.|+|++|+|+...|.+|..+.+|.+|+|-.|.+--.- -.|+.+-        |+.+.-.|..|  .+....++.++
T Consensus       323 ~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W--------lr~~~~~~~~~--Cq~p~~~~~~~  392 (498)
T KOG4237|consen  323 GLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW--------LRKKSVVGNPR--CQSPGFVRQIP  392 (498)
T ss_pred             cceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHH--------HhhCCCCCCCC--CCCCchhcccc
Confidence            8888888888888888888888888888888877764211 1233221        22222222221  12233566666


Q ss_pred             ccCCcCCCC---cChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccce-eEEEc
Q 046848          687 LSSNNISGI---IPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLV-KILDL  762 (956)
Q Consensus       687 Ls~N~l~~~---~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~L  762 (956)
                      ++.+.+...   .|+..+-.++=      .          .+       .                   ..+-+ +...-
T Consensus       393 ~~dv~~~~~~c~~~ee~~~~~s~------~----------cP-------~-------------------~c~c~~tVvRc  430 (498)
T KOG4237|consen  393 ISDVAFGDFRCGGPEELGCLTSS------P----------CP-------P-------------------PCTCLDTVVRC  430 (498)
T ss_pred             chhccccccccCCccccCCCCCC------C----------CC-------C-------------------CcchhhhhHhh
Confidence            666655422   11111100000      0          00       0                   00000 12223


Q ss_pred             CCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCC
Q 046848          763 SSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYN  837 (956)
Q Consensus       763 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  837 (956)
                      |+..+. .+|..+-  ....+|+|.+|.++ .+|.+  .+.+| .+|+|+|+++..--..|.++++|.+|-+|+|
T Consensus       431 Snk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  431 SNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            333333 3332221  12346777777777 56666  56666 7777777777666667777788888877776

>PLN03210 Resistant to P

Probab=99.87  E-value=3e-21  Score=243.50  Aligned_cols=346  Identities=23%  Similarity=0.275  Sum_probs=181.2

Q ss_pred             ccccCCCCCCEEEccCCCC------CCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCCCCCEEEeecccccc
Q 046848          307 KSLGNMCNLKSLTLSYNTL------RGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNG  380 (956)
Q Consensus       307 ~~l~~l~~L~~L~Ls~n~l------~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~  380 (956)
                      .+|.++++|+.|.+..+..      ...+|..+..++.     +|+.|++.++.+...+..+ ...+|++|++.+|.+. 
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~-----~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP-----KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCc-----ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-
Confidence            3466666777776654432      1223444444431     5666666666555333333 3456666666666554 


Q ss_pred             ccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhh
Q 046848          381 TINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLR  460 (956)
Q Consensus       381 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  460 (956)
                      .++..+..+++|+.|+++++...+.+|.  +..+++|                        +.|++++|.....+|..+.
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~L------------------------e~L~L~~c~~L~~lp~si~  678 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNL------------------------ETLKLSDCSSLVELPSSIQ  678 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcc------------------------cEEEecCCCCccccchhhh
Confidence            3444455556666666655543333332  3444444                        4445555444445677777


Q ss_pred             cccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceee
Q 046848          461 NQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLN  540 (956)
Q Consensus       461 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~  540 (956)
                      ++++|+.|++++|..-+.+|..+  .+++|+.|++++|...+.+|..                         .       
T Consensus       679 ~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~-------------------------~-------  724 (1153)
T PLN03210        679 YLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI-------------------------S-------  724 (1153)
T ss_pred             ccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc-------------------------c-------
Confidence            77777777777765444555433  3445666666555332222211                         0       


Q ss_pred             CCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceee
Q 046848          541 LSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT  620 (956)
Q Consensus       541 l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  620 (956)
                                        .+|++|++++|.+. .+|..+ .+++|+.|.+.++... .++..+                .
T Consensus       725 ------------------~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~-~l~~~~----------------~  767 (1153)
T PLN03210        725 ------------------TNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE-KLWERV----------------Q  767 (1153)
T ss_pred             ------------------CCcCeeecCCCccc-cccccc-cccccccccccccchh-hccccc----------------c
Confidence                              34555555555554 334332 3455555555543321 111000                0


Q ss_pred             eeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhc
Q 046848          621 GELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCF  700 (956)
Q Consensus       621 ~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~  700 (956)
                      ...+..+...++|+.|+|++|...+.+|.++. ++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|...
T Consensus       768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~  845 (1153)
T PLN03210        768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS  845 (1153)
T ss_pred             ccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc
Confidence            01111122234566666666655555666555 46666666666654444555444 56666666666654332222211


Q ss_pred             cccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhcccc
Q 046848          701 NNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAG  780 (956)
Q Consensus       701 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  780 (956)
                                                                            ++++.|+|++|.++ .+|..+..+++
T Consensus       846 ------------------------------------------------------~nL~~L~Ls~n~i~-~iP~si~~l~~  870 (1153)
T PLN03210        846 ------------------------------------------------------TNISDLNLSRTGIE-EVPWWIEKFSN  870 (1153)
T ss_pred             ------------------------------------------------------cccCEeECCCCCCc-cChHHHhcCCC
Confidence                                                                  12366777777776 56667777777


Q ss_pred             CCEEEcccc-cccccCCccccCCCCCCEEECCCCc
Q 046848          781 LIALNLSRN-TLTGQITPKIGQLKSLDFLDLSRNQ  814 (956)
Q Consensus       781 L~~L~Ls~N-~l~~~ip~~l~~l~~L~~L~Ls~N~  814 (956)
                      |+.|+|++| ++. .+|..+..+++|+.|++++|.
T Consensus       871 L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        871 LSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence            777777763 444 466666777777777777764

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.5e-21  Score=227.39  Aligned_cols=222  Identities=27%  Similarity=0.294  Sum_probs=139.9

Q ss_pred             CCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEE
Q 046848          534 LNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLS  613 (956)
Q Consensus       534 ~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  613 (956)
                      .+|+.|++++|+++.. |...    ++|+.|++++|.++ .+|..   .++|+.|++++|+++ .+|..   +++|+.|+
T Consensus       242 ~~Lk~LdLs~N~LtsL-P~lp----~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~Ld  308 (788)
T PRK15387        242 PELRTLEVSGNQLTSL-PVLP----PGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELS  308 (788)
T ss_pred             CCCcEEEecCCccCcc-cCcc----cccceeeccCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeE
Confidence            3455555555555432 1111    46677777777766 33432   245667777777776 34432   35677777


Q ss_pred             ccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCC
Q 046848          614 LYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS  693 (956)
Q Consensus       614 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  693 (956)
                      +++|++++ +|...   .+|+.|++++|+++ .+|..    ..+|++|+|++|++++ +|..   .++|+.|++++|+++
T Consensus       309 LS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~  375 (788)
T PRK15387        309 VSDNQLAS-LPALP---SELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT  375 (788)
T ss_pred             CCCCcccc-CCCCc---ccccccccccCccc-ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhccccc
Confidence            77777774 34322   34667777777776 56641    2467777777777773 4432   246677777777776


Q ss_pred             CCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCch
Q 046848          694 GIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPE  773 (956)
Q Consensus       694 ~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  773 (956)
                      + +|...                                                      ..|+.|+|++|+|++ +|.
T Consensus       376 ~-LP~l~------------------------------------------------------~~L~~LdLs~N~Lt~-LP~  399 (788)
T PRK15387        376 S-LPALP------------------------------------------------------SGLKELIVSGNRLTS-LPV  399 (788)
T ss_pred             c-Ccccc------------------------------------------------------cccceEEecCCcccC-CCC
Confidence            3 33211                                                      123678888888874 554


Q ss_pred             hhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848          774 EIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       774 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  845 (956)
                      .   .++|+.|++++|+|++ +|...   .+|+.|++++|+++ .+|..+.+++.|+.|++++|+|+|.+|.
T Consensus       400 l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        400 L---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             c---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            3   2567888888888874 66543   45677888888887 6788888888888888888888887765

>PLN03210 Resistant to P

Probab=99.86  E-value=1.7e-20  Score=236.81  Aligned_cols=127  Identities=23%  Similarity=0.379  Sum_probs=106.6

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|..   .++|+.|+|
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L  853 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL  853 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence            678999999998888899999999999999999987666788766 6899999999998765566653   367899999


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNN  691 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  691 (956)
                      ++|.++ .+|.++. .+++|++|++++|+-...+|..+..+++|+.+++++|.
T Consensus       854 s~n~i~-~iP~si~-~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        854 SRTGIE-EVPWWIE-KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCc-cChHHHh-cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            999998 8999887 69999999999865555688888889999999999885

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=3.6e-21  Score=224.13  Aligned_cols=187  Identities=27%  Similarity=0.358  Sum_probs=137.4

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ++|+.|++++|+++ .+|..   .++|+.|++++|++++ +|..   ..+|+.|++++|++++ +|..   ..+|+.|+|
T Consensus       282 ~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdL  349 (788)
T PRK15387        282 SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSV  349 (788)
T ss_pred             hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEec
Confidence            46777888888877 34542   3578888888888874 4442   2457788888888874 5532   247888888


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS  718 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  718 (956)
                      ++|+++ .+|..    ..+|+.|++++|++.+ +|..   ..+|+.|++++|+|++ +|...   +              
T Consensus       350 S~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~---s--------------  402 (788)
T PRK15387        350 SDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP---S--------------  402 (788)
T ss_pred             CCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc---c--------------
Confidence            888888 67752    4578888888888884 6643   3578899999998874 34221   1              


Q ss_pred             cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848          719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK  798 (956)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  798 (956)
                                                           .|+.|++++|+|++ +|...   .+|+.|+|++|+|+ .+|..
T Consensus       403 -------------------------------------~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~s  440 (788)
T PRK15387        403 -------------------------------------ELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPES  440 (788)
T ss_pred             -------------------------------------CCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChH
Confidence                                                 23788999999984 66543   46788999999998 78999


Q ss_pred             ccCCCCCCEEECCCCccCcCCcccccCC
Q 046848          799 IGQLKSLDFLDLSRNQFFGSIPSSLSQL  826 (956)
Q Consensus       799 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  826 (956)
                      ++++++|+.|+|++|++++.+|..+..+
T Consensus       441 l~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        441 LIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             HhhccCCCeEECCCCCCCchHHHHHHHH
Confidence            9999999999999999999888877443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.83  E-value=4.5e-22  Score=202.66  Aligned_cols=274  Identities=25%  Similarity=0.263  Sum_probs=178.7

Q ss_pred             CCEEeCCCCCCCCCCCC-ccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCC-CCCCCCCCccccCCCCCCcEE
Q 046848          115 LTYLDLSGNNFSGSSIP-EFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGF-NSLISGENLEWLSHLSSLIYL  192 (956)
Q Consensus       115 L~~L~Ls~n~~~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~-n~~~~~~~~~~l~~l~~L~~L  192 (956)
                      -..++|..|.|+.  +| ..|+.+++||.||||+|+|+.+-|.+|.+|..|..|-+-+ |+| +...-..|+++..|+.|
T Consensus        69 tveirLdqN~I~~--iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI-~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   69 TVEIRLDQNQISS--IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI-TDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             ceEEEeccCCccc--CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch-hhhhhhHhhhHHHHHHH
Confidence            3567777888873  44 4677888888888888888877777777777766554444 544 22222223333333333


Q ss_pred             ecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccceEE
Q 046848          193 DLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELIN  272 (956)
Q Consensus       193 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~  272 (956)
                      .+.-                                                     |++.-.....+..+.. + ..|.
T Consensus       146 llNa-----------------------------------------------------n~i~Cir~~al~dL~~-l-~lLs  170 (498)
T KOG4237|consen  146 LLNA-----------------------------------------------------NHINCIRQDALRDLPS-L-SLLS  170 (498)
T ss_pred             hcCh-----------------------------------------------------hhhcchhHHHHHHhhh-c-chhc
Confidence            3333                                                     3333333334444444 4 5666


Q ss_pred             ecccccccCCCcccCCCCCCcEEECCCCcCcc-------------ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCC
Q 046848          273 LGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE-------------IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDG  339 (956)
Q Consensus       273 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-------------ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~  339 (956)
                      +..|.+.......|..+..++.+++..|.+..             .|..++...-..-..+.+.++....+.-+....  
T Consensus       171 lyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~--  248 (498)
T KOG4237|consen  171 LYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL--  248 (498)
T ss_pred             ccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhH--
Confidence            66666665444577788888888888776322             223334444444444555555444433332210  


Q ss_pred             CccCCCCEEEccCCcCcccCCC--CCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCC
Q 046848          340 CTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNL  417 (956)
Q Consensus       340 ~~~~~L~~L~Ls~n~l~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  417 (956)
                         ..+..=-.+.+...+.-|.  |..+++|+.|++++|+++++-+.+|.....+++|.|..|++..+... .|.++..|
T Consensus       249 ---esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~-~f~~ls~L  324 (498)
T KOG4237|consen  249 ---ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSG-MFQGLSGL  324 (498)
T ss_pred             ---HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHH-hhhccccc
Confidence               0121111223333344444  89999999999999999999999999999999999999999865554 58899999


Q ss_pred             CEEEcCCCcccccccCCcCCCCCcceEEcCCCCCC
Q 046848          418 TILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIG  452 (956)
Q Consensus       418 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  452 (956)
                      +.|+|.+|+|+...+..|.+...|.+|++-.|.+.
T Consensus       325 ~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  325 KTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             eeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            99999999999999999999999999999887654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.8e-19  Score=211.82  Aligned_cols=228  Identities=23%  Similarity=0.441  Sum_probs=148.9

Q ss_pred             CCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEE
Q 046848          533 PLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSL  612 (956)
Q Consensus       533 ~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  612 (956)
                      +.+++.|++++|+++.......    .+|+.|++++|+++ .+|..+.  .+|+.|++++|++. .+|..+.  ++|+.|
T Consensus       198 p~~L~~L~Ls~N~LtsLP~~l~----~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L  267 (754)
T PRK15370        198 PEQITTLILDNNELKSLPENLQ----GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSL  267 (754)
T ss_pred             ccCCcEEEecCCCCCcCChhhc----cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEE
Confidence            3456667777776664433222    46777777777776 4555443  36777777777776 5565543  467777


Q ss_pred             EccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcC
Q 046848          613 SLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNI  692 (956)
Q Consensus       613 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  692 (956)
                      ++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.   ++|+.|++++|+++. +|..+.  ++|+.|++++|.+
T Consensus       268 ~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L  337 (754)
T PRK15370        268 DLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENAL  337 (754)
T ss_pred             ECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcc
Confidence            77777777 4565443  46777777777777 5665443   367777777777773 454432  5777777777777


Q ss_pred             CCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCc
Q 046848          693 SGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVP  772 (956)
Q Consensus       693 ~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  772 (956)
                      ++ +|..+.  +                                                   +|+.|++++|+|+ .+|
T Consensus       338 t~-LP~~l~--~---------------------------------------------------sL~~L~Ls~N~L~-~LP  362 (754)
T PRK15370        338 TS-LPASLP--P---------------------------------------------------ELQVLDVSKNQIT-VLP  362 (754)
T ss_pred             cc-CChhhc--C---------------------------------------------------cccEEECCCCCCC-cCC
Confidence            64 343321  1                                                   2377888888887 466


Q ss_pred             hhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccc----cCCCCCCeEECcCCccee
Q 046848          773 EEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSL----SQLSRLSVMDLSYNNLSG  841 (956)
Q Consensus       773 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l----~~l~~L~~L~ls~N~l~g  841 (956)
                      ..+.  +.|+.|+|++|+|+ .+|+.+.  ..|+.|++++|+++ .+|..+    ..++.+..+++.+|+++.
T Consensus       363 ~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        363 ETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             hhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            6553  57888888888887 5666554  36788888888887 445443    334667788888888763

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=8.7e-19  Score=206.02  Aligned_cols=266  Identities=25%  Similarity=0.425  Sum_probs=181.6

Q ss_pred             cceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCC
Q 046848          463 NQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLS  542 (956)
Q Consensus       463 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~  542 (956)
                      .+...|++++++++. +|..+   .+.++.|++++|+++. +|..                        ...+|+.|+++
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~I---p~~L~~L~Ls~N~Lts-LP~~------------------------l~~nL~~L~Ls  228 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACI---PEQITTLILDNNELKS-LPEN------------------------LQGNIKTLYAN  228 (754)
T ss_pred             cCceEEEeCCCCcCc-CCccc---ccCCcEEEecCCCCCc-CChh------------------------hccCCCEEECC
Confidence            356778888888874 55443   2467888888887762 3321                        12367777777


Q ss_pred             CCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeee
Q 046848          543 KNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGE  622 (956)
Q Consensus       543 ~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  622 (956)
                      +|+++.....+.    ..|+.|++++|+++ .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|++++ 
T Consensus       229 ~N~LtsLP~~l~----~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-  297 (754)
T PRK15370        229 SNQLTSIPATLP----DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-  297 (754)
T ss_pred             CCccccCChhhh----ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-
Confidence            777764432222    46888888888887 5666554  47888888888888 4676553  578888888888884 


Q ss_pred             CCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccc
Q 046848          623 LPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNN  702 (956)
Q Consensus       623 ~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  702 (956)
                      +|..+.  ++|+.|++++|+++ .+|..+.   ++|+.|++++|.+++ +|..+.  ++|+.|++++|+|+ .+|..+. 
T Consensus       298 LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-  366 (754)
T PRK15370        298 LPAHLP--SGITHLNVQSNSLT-ALPETLP---PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-  366 (754)
T ss_pred             Ccccch--hhHHHHHhcCCccc-cCCcccc---ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-
Confidence            555443  46888888888888 6776543   578888898888874 666554  68889999998887 3454332 


Q ss_pred             cccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCC
Q 046848          703 FTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLI  782 (956)
Q Consensus       703 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  782 (956)
                       +                                                   .|+.|+|++|+|+ .+|..+.  ..|+
T Consensus       367 -~---------------------------------------------------~L~~LdLs~N~Lt-~LP~~l~--~sL~  391 (754)
T PRK15370        367 -P---------------------------------------------------TITTLDVSRNALT-NLPENLP--AALQ  391 (754)
T ss_pred             -C---------------------------------------------------CcCEEECCCCcCC-CCCHhHH--HHHH
Confidence             1                                                   2378888888888 5666654  3688


Q ss_pred             EEEcccccccccCCccc----cCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceec
Q 046848          783 ALNLSRNTLTGQITPKI----GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK  842 (956)
Q Consensus       783 ~L~Ls~N~l~~~ip~~l----~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  842 (956)
                      .|++++|+|+ .+|..+    +.++.+..|++.+|+++.   ..+.   .|+.+ ++.+.+.|+
T Consensus       392 ~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~---~tl~---~L~~L-l~s~~~~gp  447 (754)
T PRK15370        392 IMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE---RTIQ---NMQRL-MSSVGYQGP  447 (754)
T ss_pred             HHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH---HHHH---HHHHh-hhcccccCC
Confidence            8889999887 556544    345778889999998873   3333   33344 444555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=4e-19  Score=195.27  Aligned_cols=213  Identities=23%  Similarity=0.266  Sum_probs=108.8

Q ss_pred             ccCCCCCCEEEcCCCcccccCCCCcCCCCC---cCEEEccCceeee----eCCccccCC-CCCcEEecCCccccccC---
Q 046848          579 WSQFDSLAILNLANNSFFGKIPDSIGFLKN---LQSLSLYNNRLTG----ELPSFFTNG-SQLTLMDLGKNGLSGEI---  647 (956)
Q Consensus       579 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~i---  647 (956)
                      +..+++|+.|++++|.+.+..+..+..+..   |++|++++|++++    .+...+..+ ++|+.|++++|.+++..   
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            333444444444444444333333322222   5555555555441    122233344 55566666666655322   


Q ss_pred             -ChhHhhcCccCcEEEccCCccccc----CCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccc
Q 046848          648 -PTWIGEGLVNLVVLSLKSNKFNGS----IPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYT  722 (956)
Q Consensus       648 -p~~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~  722 (956)
                       +..+. .+++|++|++++|.+++.    ++..+...++|+.|++++|.+++.....+...                   
T Consensus       157 ~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-------------------  216 (319)
T cd00116         157 LAKALR-ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET-------------------  216 (319)
T ss_pred             HHHHHH-hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH-------------------
Confidence             12222 344566666666666531    22334445567777777766653322221110                   


Q ss_pred             cccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhc-----cccCCEEEcccccccc----
Q 046848          723 SLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD-----LAGLIALNLSRNTLTG----  793 (956)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----  793 (956)
                                                  ...++.|+.|++++|.+++.....+..     .+.|+.|++++|.+++    
T Consensus       217 ----------------------------~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~  268 (319)
T cd00116         217 ----------------------------LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK  268 (319)
T ss_pred             ----------------------------hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH
Confidence                                        011223466777777766533333322     2677777777777752    


Q ss_pred             cCCccccCCCCCCEEECCCCccCcC----CcccccCC-CCCCeEECcCCcc
Q 046848          794 QITPKIGQLKSLDFLDLSRNQFFGS----IPSSLSQL-SRLSVMDLSYNNL  839 (956)
Q Consensus       794 ~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l-~~L~~L~ls~N~l  839 (956)
                      .+...+..+++|+++|+++|.++..    +...+... +.|+++|+.+|++
T Consensus       269 ~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         269 DLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            2344455667778888888877744    33344444 5677888877764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=4.1e-19  Score=160.31  Aligned_cols=183  Identities=28%  Similarity=0.458  Sum_probs=138.5

Q ss_pred             CCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCE
Q 046848          605 FLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQI  684 (956)
Q Consensus       605 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  684 (956)
                      ++...+.|.|++|+++ .+|..++.+.+|+.|++++|++. ++|..+. .+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence            4566677777777777 55666777777777777777777 7787777 5888888888888876 67888888888888


Q ss_pred             EeccCCcCCCC-cChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcC
Q 046848          685 LDLSSNNISGI-IPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLS  763 (956)
Q Consensus       685 L~Ls~N~l~~~-~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  763 (956)
                      |||++|++... .|..|-.++.|                                                   +.|+|+
T Consensus       107 ldltynnl~e~~lpgnff~m~tl---------------------------------------------------ralyl~  135 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTL---------------------------------------------------RALYLG  135 (264)
T ss_pred             hhccccccccccCCcchhHHHHH---------------------------------------------------HHHHhc
Confidence            88888887643 44444433333                                                   667888


Q ss_pred             CCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCC---CCeEECcCCcce
Q 046848          764 SNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSR---LSVMDLSYNNLS  840 (956)
Q Consensus       764 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~---L~~L~ls~N~l~  840 (956)
                      .|.+. .+|..++++++|+.|.+..|.+- +.|.+++.+++|+.|.+.+|+++ .+|..++++.-   =+.+.+.+|+|.
T Consensus       136 dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  136 DNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             CCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence            88887 78888888999999999888887 78888999999999999999988 66666766542   356677888888


Q ss_pred             ecCCC
Q 046848          841 GKIPS  845 (956)
Q Consensus       841 g~ip~  845 (956)
                      -+|..
T Consensus       213 ~pIae  217 (264)
T KOG0617|consen  213 NPIAE  217 (264)
T ss_pred             ChHHH
Confidence            76653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=4.8e-18  Score=186.76  Aligned_cols=235  Identities=25%  Similarity=0.249  Sum_probs=170.9

Q ss_pred             CceeEEECCCCCCCCC----CCccccCCCCCCEEEcCCCcccc------cCCCCcCCCCCcCEEEccCceeeeeCCcccc
Q 046848          559 HKLDYIDLSNNLLSGR----LPDCWSQFDSLAILNLANNSFFG------KIPDSIGFLKNLQSLSLYNNRLTGELPSFFT  628 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  628 (956)
                      ..|+.|+++++.+++.    ++..+...+++++++++++.+.+      .++..+..+++|+.|++++|.+.+..+..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            5688999999888642    45566777889999999888762      2344567788999999999999876666666


Q ss_pred             CCCC---CcEEecCCccccc----cCChhHhhcC-ccCcEEEccCCccccc----CCccccCCCCcCEEeccCCcCCCCc
Q 046848          629 NGSQ---LTLMDLGKNGLSG----EIPTWIGEGL-VNLVVLSLKSNKFNGS----IPLQLCHLANVQILDLSSNNISGII  696 (956)
Q Consensus       629 ~l~~---L~~L~Ls~N~l~~----~ip~~~~~~l-~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~  696 (956)
                      .+.+   |+.|++++|++++    .+...+. .+ ++|++|++++|.+++.    ++..+..+++|++|++++|.+++..
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence            5555   9999999999873    2233333 35 7899999999998842    3445677788999999999987532


Q ss_pred             Chhcc-ccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCC----
Q 046848          697 PKCFN-NFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEV----  771 (956)
Q Consensus       697 p~~~~-~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----  771 (956)
                      ...+. .+.                                                ..+.|+.|+|++|.+++..    
T Consensus       182 ~~~l~~~l~------------------------------------------------~~~~L~~L~L~~n~i~~~~~~~l  213 (319)
T cd00116         182 IRALAEGLK------------------------------------------------ANCNLEVLDLNNNGLTDEGASAL  213 (319)
T ss_pred             HHHHHHHHH------------------------------------------------hCCCCCEEeccCCccChHHHHHH
Confidence            11111 111                                                1234589999999998543    


Q ss_pred             chhhhccccCCEEEcccccccccCCccccC-----CCCCCEEECCCCccC----cCCcccccCCCCCCeEECcCCcceec
Q 046848          772 PEEIMDLAGLIALNLSRNTLTGQITPKIGQ-----LKSLDFLDLSRNQFF----GSIPSSLSQLSRLSVMDLSYNNLSGK  842 (956)
Q Consensus       772 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~----~~ip~~l~~l~~L~~L~ls~N~l~g~  842 (956)
                      +..+..+++|+.|++++|.+++.....+..     .+.|+.|++++|.++    ..+.+.+..++.|+++|+++|+++..
T Consensus       214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            344567888999999999998643433332     479999999999997    23455667778899999999999754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=1.1e-18  Score=157.55  Aligned_cols=185  Identities=30%  Similarity=0.507  Sum_probs=122.9

Q ss_pred             CCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEE
Q 046848          582 FDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVL  661 (956)
Q Consensus       582 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L  661 (956)
                      +...+.|.+|+|+++ .+|..++.+.+|+.|++++|+++ .+|.+++.+++|+.|+++-|++. .+|..++ .++.|++|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCchhhhh
Confidence            344555556666665 34445555666666666666665 55555666666666666666665 5666655 46666666


Q ss_pred             EccCCcccc-cCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccccccccccccccccccee
Q 046848          662 SLKSNKFNG-SIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAV  740 (956)
Q Consensus       662 ~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  740 (956)
                      ||.+|++.. .+|..|..++.|+.|.|+.|.+. .+|..++++++|                                  
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l----------------------------------  152 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL----------------------------------  152 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce----------------------------------
Confidence            666666543 45666666666777777777765 566666665555                                  


Q ss_pred             EEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCC---CCCEEECCCCccCc
Q 046848          741 LTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLK---SLDFLDLSRNQFFG  817 (956)
Q Consensus       741 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~---~L~~L~Ls~N~l~~  817 (956)
                                       +.|.+..|.+- ..|.+++.++.|++|++.+|+++ .+|++++++.   +=+.+.+.+|....
T Consensus       153 -----------------qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  153 -----------------QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             -----------------eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence                             66667777666 68899999999999999999998 7888888764   34567788888877


Q ss_pred             CCccccc
Q 046848          818 SIPSSLS  824 (956)
Q Consensus       818 ~ip~~l~  824 (956)
                      .|.+.|.
T Consensus       214 pIaeQf~  220 (264)
T KOG0617|consen  214 PIAEQFL  220 (264)
T ss_pred             hHHHHHH
Confidence            7766653

>PLN03150 hypothetical protein; Provisional

Probab=99.56  E-value=1.2e-14  Score=171.17  Aligned_cols=116  Identities=40%  Similarity=0.688  Sum_probs=104.1

Q ss_pred             eeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcC
Q 046848          757 VKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSY  836 (956)
Q Consensus       757 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  836 (956)
                      ++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.++++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceecCCCCC--cCCccccccccCC-CCCCCCCCCCCC
Q 046848          837 NNLSGKIPSGT--QLQSFSTSMYAGN-ELCGLPLPNKCP  872 (956)
Q Consensus       837 N~l~g~ip~~~--~~~~~~~~~~~~n-~l~~~~~~~~c~  872 (956)
                      |+++|.+|..-  .+.......+.+| .+||.|....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999752  1223345568899 899987656673

>PLN03150 hypothetical protein; Provisional

Probab=99.47  E-value=1.9e-13  Score=161.14  Aligned_cols=150  Identities=32%  Similarity=0.499  Sum_probs=121.9

Q ss_pred             CCCHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCCc----cccceeecC--CC--CcEEEEECCCCCCCCCCCCccccc
Q 046848           35 RCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCC----GWRGVNCSN--RT--GHVYKLDLHILQVFPSPCLKGTIS  106 (956)
Q Consensus        35 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c----~w~gv~c~~--~~--~~v~~l~l~~~~~~~~~~l~g~l~  106 (956)
                      .+.++|.+||+++|+++.++..  .+|.    +..||    .|.||.|..  ..  .+|+.|+|++      +.+.|.+|
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~------n~L~g~ip  435 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN------QGLRGFIP  435 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC------CCccccCC
Confidence            4677899999999999876542  4896    34453    799999952  22  2589999998      68899999


Q ss_pred             cccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCC-
Q 046848          107 SSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSH-  185 (956)
Q Consensus       107 ~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~-  185 (956)
                      +.++++++|++|+|++|.+.+. +|..++.+++|++|+|++|+++|.+|..++++++|++|+|++|.+ ....|..+.. 
T Consensus       436 ~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l-~g~iP~~l~~~  513 (623)
T PLN03150        436 NDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL-SGRVPAALGGR  513 (623)
T ss_pred             HHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc-cccCChHHhhc
Confidence            9999999999999999999986 999999999999999999999999999999999999999999987 4444555543 


Q ss_pred             CCCCcEEeccccc
Q 046848          186 LSSLIYLDLSFSN  198 (956)
Q Consensus       186 l~~L~~L~Ls~n~  198 (956)
                      ..++..+++.+|.
T Consensus       514 ~~~~~~l~~~~N~  526 (623)
T PLN03150        514 LLHRASFNFTDNA  526 (623)
T ss_pred             cccCceEEecCCc
Confidence            2345566666554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.38  E-value=1.9e-14  Score=154.13  Aligned_cols=113  Identities=32%  Similarity=0.511  Sum_probs=52.9

Q ss_pred             EEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCC
Q 046848          587 ILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSN  666 (956)
Q Consensus       587 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N  666 (956)
                      ..|++.|++. .+|..+..+..|+.+.|+.|.+. .+|..+.++..|++|||+.|+++ .+|..++ .|+ |+.|-+++|
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DLP-LKVLIVSNN  153 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cCc-ceeEEEecC
Confidence            3444444444 34444444444444445554444 44444445555555555555554 4444444 222 455555555


Q ss_pred             cccccCCccccCCCCcCEEeccCCcCCCCcChhccccccC
Q 046848          667 KFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAM  706 (956)
Q Consensus       667 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  706 (956)
                      +++ .+|..++.++.|..||.+.|.+. .+|..++.+.+|
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl  191 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL  191 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH
Confidence            544 44444444445555555555544 333334433333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.32  E-value=4.4e-14  Score=151.37  Aligned_cols=194  Identities=29%  Similarity=0.407  Sum_probs=160.8

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ..-...|++.|++. .+|..++.+..|+.+.+..|.+. .+|.+++++..|.+|||+.|+++ .+|..+..|+ |+.|-+
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence            34567788999988 78888888888999999999988 78889999999999999999998 7788888776 899999


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS  718 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  718 (956)
                      ++|+++ .+|..++ .+..|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..++              
T Consensus       151 sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp--------------  212 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP--------------  212 (722)
T ss_pred             ecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc--------------
Confidence            999998 8999998 7889999999999987 78888999999999999999987 4555544332              


Q ss_pred             cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848          719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK  798 (956)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  798 (956)
                                                            |..||+|+|+++ .||-.|.+++.|++|-|.+|.|. ..|..
T Consensus       213 --------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAq  252 (722)
T KOG0532|consen  213 --------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQ  252 (722)
T ss_pred             --------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHH
Confidence                                                  368999999998 89999999999999999999998 55655


Q ss_pred             cc---CCCCCCEEECCCCc
Q 046848          799 IG---QLKSLDFLDLSRNQ  814 (956)
Q Consensus       799 l~---~l~~L~~L~Ls~N~  814 (956)
                      +.   ...--++|+..-++
T Consensus       253 IC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  253 ICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             HHhccceeeeeeecchhcc
Confidence            53   34445677777774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.24  E-value=8.2e-12  Score=141.19  Aligned_cols=105  Identities=39%  Similarity=0.593  Sum_probs=53.9

Q ss_pred             CCCCCEEEcCCCcccccCCCCcCCCC-CcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcE
Q 046848          582 FDSLAILNLANNSFFGKIPDSIGFLK-NLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVV  660 (956)
Q Consensus       582 l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~  660 (956)
                      ++.++.|++.+|.++ .+|.....++ +|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|.... .++.|+.
T Consensus       115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~  190 (394)
T COG4886         115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNN  190 (394)
T ss_pred             ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhh-hhhhhhh
Confidence            345555555555555 3333444442 5555555555555 33344555555555555555555 5554443 3555555


Q ss_pred             EEccCCcccccCCccccCCCCcCEEeccCCc
Q 046848          661 LSLKSNKFNGSIPLQLCHLANVQILDLSSNN  691 (956)
Q Consensus       661 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  691 (956)
                      |++++|++. .+|........|+++++++|+
T Consensus       191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         191 LDLSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             eeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            555555555 344333333445555555553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.23  E-value=1e-11  Score=140.39  Aligned_cols=200  Identities=36%  Similarity=0.474  Sum_probs=161.1

Q ss_pred             CEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCC-CCcEEecCCccccccCChhHhhcCccCcEEEcc
Q 046848          586 AILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGS-QLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLK  664 (956)
Q Consensus       586 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~  664 (956)
                      ..+++..|.+...+ ..+..++.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..+. .+++|+.|+++
T Consensus        96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~  171 (394)
T COG4886          96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLS  171 (394)
T ss_pred             ceeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccC
Confidence            46888888875333 34455688999999999999 6666677774 9999999999999 8877777 79999999999


Q ss_pred             CCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEec
Q 046848          665 SNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWK  744 (956)
Q Consensus       665 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  744 (956)
                      +|++. .+|.....+++|+.|++++|+++ .+|........                                       
T Consensus       172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~---------------------------------------  210 (394)
T COG4886         172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSA---------------------------------------  210 (394)
T ss_pred             Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhh---------------------------------------
Confidence            99998 56666668899999999999998 44443322222                                       


Q ss_pred             CccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCccccc
Q 046848          745 GSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLS  824 (956)
Q Consensus       745 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  824 (956)
                                  |+++++++|.+. .++..+.++..+..+.+++|++. .++..++.+++++.|++++|.++... . ++
T Consensus       211 ------------L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~-~-~~  274 (394)
T COG4886         211 ------------LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSIS-S-LG  274 (394)
T ss_pred             ------------hhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccccc-c-cc
Confidence                        378889999654 57778889999999999999987 45788899999999999999998543 3 88


Q ss_pred             CCCCCCeEECcCCcceecCCCC
Q 046848          825 QLSRLSVMDLSYNNLSGKIPSG  846 (956)
Q Consensus       825 ~l~~L~~L~ls~N~l~g~ip~~  846 (956)
                      .+..++.||+++|.++...|..
T Consensus       275 ~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         275 SLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccCccCEEeccCccccccchhh
Confidence            8999999999999998877654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.7e-11  Score=128.11  Aligned_cols=166  Identities=20%  Similarity=0.230  Sum_probs=89.8

Q ss_pred             CCCCCCcEEECCCCCCCCCCCccccCCCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccc
Q 046848          159 GNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNS  238 (956)
Q Consensus       159 ~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  238 (956)
                      +++.+|+...|.++.......-.....|++++.||||.|-+............+|+|+.|+++.|.+.....  ......
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~--s~~~~~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS--SNTTLL  195 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc--ccchhh
Confidence            345555555555554311111134556666666666666666655555666667777777777776654333  222223


Q ss_pred             cCCccEEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCcccc--ccccCCCCCC
Q 046848          239 STSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP--KSLGNMCNLK  316 (956)
Q Consensus       239 ~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip--~~l~~l~~L~  316 (956)
                      ++.|+.|.+++|.++..--.++.....++ +.|+|..|..-........-+..|+.|||++|++-..+  ...+.++.|+
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl-~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSL-EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcH-HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            36666666666666533222222222225 66666666422222223334556667777777666654  3455666666


Q ss_pred             EEEccCCCCCC
Q 046848          317 SLTLSYNTLRG  327 (956)
Q Consensus       317 ~L~Ls~n~l~~  327 (956)
                      .|+++.+.+..
T Consensus       275 ~Lnls~tgi~s  285 (505)
T KOG3207|consen  275 QLNLSSTGIAS  285 (505)
T ss_pred             hhhccccCcch
Confidence            66666666553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.04  E-value=1.2e-11  Score=125.83  Aligned_cols=68  Identities=37%  Similarity=0.516  Sum_probs=40.2

Q ss_pred             ccccccccCCCEEeCCCCCCCCC---CCCccccCCCCCCEEecCCCCCCC----CCCc-------cCCCCCCCcEEECCC
Q 046848          106 SSSLLILQHLTYLDLSGNNFSGS---SIPEFIGSLSKLSYLGLSNTEFAG----PIPL-------QLGNLSRLQVLDIGF  171 (956)
Q Consensus       106 ~~~l~~l~~L~~L~Ls~n~~~~~---~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~-------~l~~L~~L~~L~Ls~  171 (956)
                      -+.+-.+..+++++||+|.+...   .+...+.+.+.|+..++|+- ++|    .+|.       ++-++++|++||||.
T Consensus        23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD  101 (382)
T KOG1909|consen   23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD  101 (382)
T ss_pred             HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence            34455677778888888877532   12334556677777777764 333    3333       234455666666666


Q ss_pred             CCC
Q 046848          172 NSL  174 (956)
Q Consensus       172 n~~  174 (956)
                      |.+
T Consensus       102 NA~  104 (382)
T KOG1909|consen  102 NAF  104 (382)
T ss_pred             ccc
Confidence            665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.03  E-value=1.8e-11  Score=124.59  Aligned_cols=135  Identities=21%  Similarity=0.281  Sum_probs=94.4

Q ss_pred             CceeEEECCCCCCCCC----CCccccCCCCCCEEEcCCCcccc----cCCCCcCCCCCcCEEEccCceeee----eCCcc
Q 046848          559 HKLDYIDLSNNLLSGR----LPDCWSQFDSLAILNLANNSFFG----KIPDSIGFLKNLQSLSLYNNRLTG----ELPSF  626 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~  626 (956)
                      ++|++++..+|++...    +...|...+.|+.+.++.|.|..    .+...|..+++|+.|||..|.++.    .+...
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            4677777777766532    22345666778888888887751    123456778888888888888873    23345


Q ss_pred             ccCCCCCcEEecCCccccccCChhH----hhcCccCcEEEccCCccccc----CCccccCCCCcCEEeccCCcCC
Q 046848          627 FTNGSQLTLMDLGKNGLSGEIPTWI----GEGLVNLVVLSLKSNKFNGS----IPLQLCHLANVQILDLSSNNIS  693 (956)
Q Consensus       627 ~~~l~~L~~L~Ls~N~l~~~ip~~~----~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~  693 (956)
                      +..++.|+.|++++|.+...-...+    -+..++|++|.+.+|.++..    +...+...+.|..|+|++|.+.
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            6677889999999998875433333    33567899999999998742    2334556889999999999994

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.98  E-value=1.3e-10  Score=115.19  Aligned_cols=82  Identities=32%  Similarity=0.366  Sum_probs=52.8

Q ss_pred             eEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCC-cccccCCCCCCeEECcC
Q 046848          758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSI-PSSLSQLSRLSVMDLSY  836 (956)
Q Consensus       758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~ls~  836 (956)
                      +.||||+|.++ .+-..-..+.+.+.|+|+.|.+..  -..++.+-+|..||+++|+|...- -..+++++-|+.+.+.+
T Consensus       332 ~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~  408 (490)
T KOG1259|consen  332 QLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG  408 (490)
T ss_pred             eEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence            55666666665 333333455666677777777643  445666777777777777775422 24567777788888888


Q ss_pred             Ccceec
Q 046848          837 NNLSGK  842 (956)
Q Consensus       837 N~l~g~  842 (956)
                      ||+.+.
T Consensus       409 NPl~~~  414 (490)
T KOG1259|consen  409 NPLAGS  414 (490)
T ss_pred             CCcccc
Confidence            888765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1e-10  Score=122.35  Aligned_cols=185  Identities=27%  Similarity=0.247  Sum_probs=101.4

Q ss_pred             CCCCCCEEecCCCCCCCCCC--ccCCCCCCCcEEECCCCCCCCC-CCccccCCCCCCcEEecccccCCCCchhHHhhcCC
Q 046848          136 SLSKLSYLGLSNTEFAGPIP--LQLGNLSRLQVLDIGFNSLISG-ENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKL  212 (956)
Q Consensus       136 ~l~~L~~L~Ls~n~l~~~~p--~~l~~L~~L~~L~Ls~n~~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l  212 (956)
                      ++.+|+...|.++... ..+  .....|++++.||||.|-+..- ...+....+++|+.|+++.|++....+ -.....+
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLLL  196 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhhh
Confidence            4555555555555544 222  2344555666666665543111 111223456666666666665544311 0111245


Q ss_pred             CCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccceEEecccccccCC-CcccCCCCC
Q 046848          213 DSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSI-PEAFGHMPS  291 (956)
Q Consensus       213 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~-p~~l~~l~~  291 (956)
                      +.|+.|.+++|+++-.--  ..+...+++|+.|++..|.....-......++. | ++|||++|.+-..- -...+.++.
T Consensus       197 ~~lK~L~l~~CGls~k~V--~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~-L-~~LdLs~N~li~~~~~~~~~~l~~  272 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDV--QWILLTFPSLEVLYLEANEIILIKATSTKILQT-L-QELDLSNNNLIDFDQGYKVGTLPG  272 (505)
T ss_pred             hhhheEEeccCCCCHHHH--HHHHHhCCcHHHhhhhcccccceecchhhhhhH-H-hhccccCCcccccccccccccccc
Confidence            666667777776652111  223333477777777777422211112222333 6 78888888765431 234678899


Q ss_pred             CcEEECCCCcCcc--cccc-----ccCCCCCCEEEccCCCCC
Q 046848          292 LNTLFLASNQFRE--IPKS-----LGNMCNLKSLTLSYNTLR  326 (956)
Q Consensus       292 L~~L~Ls~n~l~~--ip~~-----l~~l~~L~~L~Ls~n~l~  326 (956)
                      |+.|+++.+.+.+  +|+.     ...+++|++|++..|++.
T Consensus       273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            9999999999888  4443     345677777777777764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.94  E-value=8.6e-10  Score=106.09  Aligned_cols=58  Identities=31%  Similarity=0.445  Sum_probs=19.7

Q ss_pred             eEEEcCCCCCCCCCchhh-hccccCCEEEccccccccc-CCccccCCCCCCEEECCCCccC
Q 046848          758 KILDLSSNKLGGEVPEEI-MDLAGLIALNLSRNTLTGQ-ITPKIGQLKSLDFLDLSRNQFF  816 (956)
Q Consensus       758 ~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~  816 (956)
                      +.|++++|+|+. +++.+ ..+++|++|+|++|+|... .-..+..+++|+.|+|.+|+++
T Consensus        67 ~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   67 KTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             hhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            566666666663 33333 3466666666666666531 1123444555566666666555

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.94  E-value=2.6e-10  Score=109.70  Aligned_cols=130  Identities=32%  Similarity=0.329  Sum_probs=41.7

Q ss_pred             ccccCCCEEeCCCCCCCCCCCCcccc-CCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCcccc-CCCC
Q 046848          110 LILQHLTYLDLSGNNFSGSSIPEFIG-SLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWL-SHLS  187 (956)
Q Consensus       110 ~~l~~L~~L~Ls~n~~~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l-~~l~  187 (956)
                      .+...+++|+|++|.|+.  + +.++ .+.+|+.|+|++|.++ .++ .+..+++|++|++++|++...  .+.+ ..++
T Consensus        16 ~n~~~~~~L~L~~n~I~~--I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i--~~~l~~~lp   88 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST--I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSI--SEGLDKNLP   88 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S---CHHHHHH-T
T ss_pred             cccccccccccccccccc--c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCcc--ccchHHhCC
Confidence            344456777777777763  2 2344 4667777777777776 332 466677777777777776221  1223 3467


Q ss_pred             CCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEc
Q 046848          188 SLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVI  247 (956)
Q Consensus       188 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L  247 (956)
                      +|++|++++|++.+... ...++.+++|+.|++.+|.+....-....+...+|+|+.||-
T Consensus        89 ~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             T--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             cCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            77777777777766544 355666677777777766665432222233334466666553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.88  E-value=4.1e-10  Score=111.64  Aligned_cols=135  Identities=24%  Similarity=0.274  Sum_probs=89.1

Q ss_pred             ccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCC
Q 046848          285 AFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGG  364 (956)
Q Consensus       285 ~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  364 (956)
                      .+.....|+++||++|.++.+.++..-.+.++.|++|+|.+...  ..+..++      +|+.|||++|.++.....-..
T Consensus       279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~------~L~~LDLS~N~Ls~~~Gwh~K  350 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELP------QLQLLDLSGNLLAECVGWHLK  350 (490)
T ss_pred             ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcc------cceEeecccchhHhhhhhHhh
Confidence            33445567778888888777777777777788888888877633  2255565      777777777776643333334


Q ss_pred             CCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccc
Q 046848          365 FSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTL  429 (956)
Q Consensus       365 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  429 (956)
                      +-+.++|.|++|.+...  ..++.+-+|..||+++|+|........+++++-|+.+.|.+|++.+
T Consensus       351 LGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  351 LGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            55677777777776532  3566667777777777777655444446677777777777776653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.84  E-value=1.4e-09  Score=131.00  Aligned_cols=109  Identities=35%  Similarity=0.438  Sum_probs=76.2

Q ss_pred             cccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCC
Q 046848          109 LLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSS  188 (956)
Q Consensus       109 l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~  188 (956)
                      |..++.|++|||++|.--+ .+|..++.|-+||||+|+++.+. .+|..+++|..|.+|++..+... ...+.....+++
T Consensus       567 f~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l-~~~~~i~~~L~~  643 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRL-ESIPGILLELQS  643 (889)
T ss_pred             HhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccc-ccccchhhhccc
Confidence            6678888888888864433 58888888888888888888888 88888888888888888877531 122344455888


Q ss_pred             CcEEecccccCCCCchhHHhhcCCCCCCEEEe
Q 046848          189 LIYLDLSFSNLSKFSNWMQVLSKLDSLKALYL  220 (956)
Q Consensus       189 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l  220 (956)
                      ||+|.+..............+.++..|+.+..
T Consensus       644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  644 LRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             ccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            88888876654433333444555555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.77  E-value=9.5e-10  Score=124.38  Aligned_cols=85  Identities=26%  Similarity=0.299  Sum_probs=56.3

Q ss_pred             eeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcC---Cccc-ccCCCCCCeE
Q 046848          757 VKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGS---IPSS-LSQLSRLSVM  832 (956)
Q Consensus       757 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~---ip~~-l~~l~~L~~L  832 (956)
                      |+.+++++|++. .++..+..+..+..|++++|++..  -..+.....+..+..+.|.+...   .... ......+...
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            467788888877 444566677778888888888764  33455666777777777776521   1121 4456667777


Q ss_pred             ECcCCcceecCC
Q 046848          833 DLSYNNLSGKIP  844 (956)
Q Consensus       833 ~ls~N~l~g~ip  844 (956)
                      .+.+|+.....+
T Consensus       311 ~~~~~~~~~~~~  322 (414)
T KOG0531|consen  311 TLELNPIRKISS  322 (414)
T ss_pred             ccccCccccccc
Confidence            888887776554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.72  E-value=6.7e-09  Score=81.98  Aligned_cols=60  Identities=40%  Similarity=0.511  Sum_probs=32.2

Q ss_pred             cCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcc
Q 046848          780 GLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNL  839 (956)
Q Consensus       780 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l  839 (956)
                      +|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            445555555555544444555555555555555555555555555555555555555543

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.70  E-value=1.7e-09  Score=122.42  Aligned_cols=217  Identities=29%  Similarity=0.315  Sum_probs=114.9

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ..++.+++..|.+.. +-..+..+++|..|++.+|+|... ...+..+++|++|++++|.|+...+  +..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence            344555555555542 223345555566666666655532 2224445555666666665553322  344444555555


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCC-ccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIP-LQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI  717 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  717 (956)
                      ++|.++ .++..-  .+..|+.+++++|++...-+ . ...+.+++.+++.+|.+......  ..               
T Consensus       148 ~~N~i~-~~~~~~--~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~--~~---------------  206 (414)
T KOG0531|consen  148 SGNLIS-DISGLE--SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL--DL---------------  206 (414)
T ss_pred             ccCcch-hccCCc--cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch--HH---------------
Confidence            555555 333211  24555555555555553222 1 34445555555555555421110  00               


Q ss_pred             ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccc--cCCEEEcccccccccC
Q 046848          718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLA--GLIALNLSRNTLTGQI  795 (956)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~i  795 (956)
                                                          +..+..+++..|.++..-+  +..+.  .|+.+++++|.+. .+
T Consensus       207 ------------------------------------~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~  247 (414)
T KOG0531|consen  207 ------------------------------------LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RS  247 (414)
T ss_pred             ------------------------------------HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cc
Confidence                                                0112344677777763322  12222  3788888888887 44


Q ss_pred             CccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCccee
Q 046848          796 TPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSG  841 (956)
Q Consensus       796 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  841 (956)
                      +..+..+..+..||+++|++...  ..+.....+..+....|++..
T Consensus       248 ~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~  291 (414)
T KOG0531|consen  248 PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLAL  291 (414)
T ss_pred             cccccccccccccchhhcccccc--ccccccchHHHhccCcchhcc
Confidence            46677788888888888888643  334555666777777777653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.67  E-value=2.2e-08  Score=79.06  Aligned_cols=59  Identities=41%  Similarity=0.540  Sum_probs=33.7

Q ss_pred             CCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCcc
Q 046848          584 SLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNG  642 (956)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  642 (956)
                      +|++|++++|+++...++.|.++++|++|++++|+++...|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555554444555555566666666665555555555555555555555554

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.66  E-value=2.7e-08  Score=71.52  Aligned_cols=40  Identities=53%  Similarity=1.069  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHccCC-CCCCCCCCCCCCCC-CCCCccccceeec
Q 046848           38 DEEREALLAFKQGLV-DESGILSSWGREDE-KRDCCGWRGVNCS   79 (956)
Q Consensus        38 ~~~~~~ll~~k~~~~-~~~~~~~~W~~~~~-~~~~c~w~gv~c~   79 (956)
                      ++|++||++||+++. +|.+.+.+|..  . ..+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence            689999999999998 56788999984  2 2799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.57  E-value=3.5e-08  Score=119.03  Aligned_cols=106  Identities=29%  Similarity=0.344  Sum_probs=62.7

Q ss_pred             CCCEEeCCCCC--CCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcE
Q 046848          114 HLTYLDLSGNN--FSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIY  191 (956)
Q Consensus       114 ~L~~L~Ls~n~--~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~  191 (956)
                      .|+.|=+.+|.  +... -+++|..++.|++|||++|.=-+.+|..+++|-+||+|++++..+  ...|..++++++|.+
T Consensus       546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLKKLIY  622 (889)
T ss_pred             ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--cccchHHHHHHhhhe
Confidence            46666666654  3311 223456677777777776655556777777777777777777665  355666666777777


Q ss_pred             EecccccCCCCchhHHhhcCCCCCCEEEecCCC
Q 046848          192 LDLSFSNLSKFSNWMQVLSKLDSLKALYLISCD  224 (956)
Q Consensus       192 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~  224 (956)
                      |++..+.-...  .+.....+.+|++|.+....
T Consensus       623 Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  623 LNLEVTGRLES--IPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ecccccccccc--ccchhhhcccccEEEeeccc
Confidence            77665543222  13444456666666665543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.50  E-value=2.8e-09  Score=117.98  Aligned_cols=180  Identities=32%  Similarity=0.278  Sum_probs=118.4

Q ss_pred             CCCcCCCCCcCEEEccCceeeeeCCccccCC-CCCcEEecCCcccc----------ccCChhHhhcCccCcEEEccCCcc
Q 046848          600 PDSIGFLKNLQSLSLYNNRLTGELPSFFTNG-SQLTLMDLGKNGLS----------GEIPTWIGEGLVNLVVLSLKSNKF  668 (956)
Q Consensus       600 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~----------~~ip~~~~~~l~~L~~L~L~~N~l  668 (956)
                      |-.+..+.+|++|.+.++.+.. . .++..+ ..|+.|- -+|.+.          |.+.....  ...|.+.+.++|.+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~L  176 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSPV--WNKLATASFSYNRL  176 (1096)
T ss_pred             CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccchh--hhhHhhhhcchhhH
Confidence            5566778899999999998873 1 111111 1233332 222221          12221111  23577788888888


Q ss_pred             cccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccc
Q 046848          669 NGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQY  748 (956)
Q Consensus       669 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  748 (956)
                      . ....++.-++.|+.|||++|+++..-  .+..                                              
T Consensus       177 ~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~----------------------------------------------  207 (1096)
T KOG1859|consen  177 V-LMDESLQLLPALESLNLSHNKFTKVD--NLRR----------------------------------------------  207 (1096)
T ss_pred             H-hHHHHHHHHHHhhhhccchhhhhhhH--HHHh----------------------------------------------
Confidence            7 55567777888899999999887331  2222                                              


Q ss_pred             eecccccceeEEEcCCCCCCCCCch-hhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCc-ccccCC
Q 046848          749 EYQSTLGLVKILDLSSNKLGGEVPE-EIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIP-SSLSQL  826 (956)
Q Consensus       749 ~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip-~~l~~l  826 (956)
                           ++.|+.|||++|.+. .+|. ....+. |+.|+|++|.++.  -..+.+|.+|+.||+++|-|.+.-. .-+..|
T Consensus       208 -----l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsL  278 (1096)
T KOG1859|consen  208 -----LPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSL  278 (1096)
T ss_pred             -----cccccccccccchhc-cccccchhhhh-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHH
Confidence                 234488999999988 4443 223344 8999999999874  4567889999999999998876322 335667


Q ss_pred             CCCCeEECcCCcceec
Q 046848          827 SRLSVMDLSYNNLSGK  842 (956)
Q Consensus       827 ~~L~~L~ls~N~l~g~  842 (956)
                      ..|..|+|.+||+.|.
T Consensus       279 s~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  279 SSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             HHHHHHhhcCCccccC
Confidence            7888999999999875

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.49  E-value=5.5e-09  Score=91.99  Aligned_cols=87  Identities=29%  Similarity=0.352  Sum_probs=62.7

Q ss_pred             eEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCC
Q 046848          758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYN  837 (956)
Q Consensus       758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  837 (956)
                      +.|+|++|.|+ .+|.++..++.|+.||++.|.+. ..|..+..+.++-+||..+|.+. .||-.+-.-+.....++.++
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne  156 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE  156 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence            67788888887 67777888888888888888887 56777777888888888888776 55544433333444566778


Q ss_pred             cceecCCCCC
Q 046848          838 NLSGKIPSGT  847 (956)
Q Consensus       838 ~l~g~ip~~~  847 (956)
                      +|.+..|...
T Consensus       157 pl~~~~~~kl  166 (177)
T KOG4579|consen  157 PLGDETKKKL  166 (177)
T ss_pred             cccccCcccc
Confidence            8887777643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=8.6e-09  Score=102.59  Aligned_cols=182  Identities=25%  Similarity=0.220  Sum_probs=95.8

Q ss_pred             CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCcc-ccCCCCCCcEE
Q 046848          114 HLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLE-WLSHLSSLIYL  192 (956)
Q Consensus       114 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~-~l~~l~~L~~L  192 (956)
                      +|++||||...++...+-..+..|.+|+.|.|.++++.+.+-..+.+-.+|+.|+++.+.-.+..... .+.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            47777777777664434445667777777777777777777777777777777777776532222111 23555555555


Q ss_pred             ecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCc--CCCCcchhhHhhcccccce
Q 046848          193 DLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNN--LTDSIYPWLFNVSSNLVEL  270 (956)
Q Consensus       193 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~~~~~~L~~~  270 (956)
                      +++.|.+..                          +.- ...+..-..+|..|+++|..  +...-...+..-..++ .+
T Consensus       266 NlsWc~l~~--------------------------~~V-tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l-~~  317 (419)
T KOG2120|consen  266 NLSWCFLFT--------------------------EKV-TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNL-VH  317 (419)
T ss_pred             CchHhhccc--------------------------hhh-hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCce-ee
Confidence            555554433                          211 01111222444444444431  1111111122222224 55


Q ss_pred             EEecccc-cccCCCcccCCCCCCcEEECCCCcCcccc---ccccCCCCCCEEEccCCC
Q 046848          271 INLGSNQ-LQGSIPEAFGHMPSLNTLFLASNQFREIP---KSLGNMCNLKSLTLSYNT  324 (956)
Q Consensus       271 L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip---~~l~~l~~L~~L~Ls~n~  324 (956)
                      |||+.|. ++...-..|-+++.|++|.++.|..- +|   -.+...+.|.+||..++-
T Consensus       318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eccccccccCchHHHHHHhcchheeeehhhhcCC-ChHHeeeeccCcceEEEEecccc
Confidence            5555543 22222234556677777777776532 12   235667778888877654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=1.2e-07  Score=94.53  Aligned_cols=225  Identities=22%  Similarity=0.296  Sum_probs=125.8

Q ss_pred             CCccCCCCCCCcEEECCCCCCCCCCCcccc-CCCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCc
Q 046848          154 IPLQLGNLSRLQVLDIGFNSLISGENLEWL-SHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSS  232 (956)
Q Consensus       154 ~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  232 (956)
                      .+-.+..+..++.|-+.++.+-..+....+ ..++.++++||.+|.+++...+...+.++|.|+.|+++.|.+...+...
T Consensus        37 s~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l  116 (418)
T KOG2982|consen   37 SYLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL  116 (418)
T ss_pred             ceeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC
Confidence            333344444566666666666444444444 3477889999999999998777778888999999999888887665421


Q ss_pred             cccccccCCccEEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCC
Q 046848          233 DLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNM  312 (956)
Q Consensus       233 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l  312 (956)
                      .  .- ..+|++|-|.+..+.-                         ......+..+|.++.|+++.|.+..        
T Consensus       117 p--~p-~~nl~~lVLNgT~L~w-------------------------~~~~s~l~~lP~vtelHmS~N~~rq--------  160 (418)
T KOG2982|consen  117 P--LP-LKNLRVLVLNGTGLSW-------------------------TQSTSSLDDLPKVTELHMSDNSLRQ--------  160 (418)
T ss_pred             c--cc-ccceEEEEEcCCCCCh-------------------------hhhhhhhhcchhhhhhhhccchhhh--------
Confidence            1  11 1444554444332210                         0111234556677777777764433        


Q ss_pred             CCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCCCCCEEEeeccccccccc-hhhcCCCC
Q 046848          313 CNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTIN-KSVGQLVK  391 (956)
Q Consensus       313 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~  391 (956)
                           +++..+......+.. ..+.   ..+.+..+.++-|++.      .-++++..+-+..|.+...-. .....++.
T Consensus       161 -----~n~Dd~c~e~~s~~v-~tlh---~~~c~~~~w~~~~~l~------r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~  225 (418)
T KOG2982|consen  161 -----LNLDDNCIEDWSTEV-LTLH---QLPCLEQLWLNKNKLS------RIFPNVNSVFVCEGPLKTESSEKGSEPFPS  225 (418)
T ss_pred             -----hccccccccccchhh-hhhh---cCCcHHHHHHHHHhHH------hhcccchheeeecCcccchhhcccCCCCCc
Confidence                 222222222111110 0000   0001222222222222      235677777777776653322 34556677


Q ss_pred             CCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccc
Q 046848          392 LESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTL  429 (956)
Q Consensus       392 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  429 (956)
                      +.-|+|+.|+|.....-..+..++.|..|.++++++..
T Consensus       226 ~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  226 LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             chhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            77888888887766555557777888888888777654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.23  E-value=3.2e-08  Score=109.82  Aligned_cols=127  Identities=28%  Similarity=0.254  Sum_probs=71.3

Q ss_pred             CCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCC-CCCCCCCC
Q 046848          291 SLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLK  369 (956)
Q Consensus       291 ~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~  369 (956)
                      .|...+.+.|.+..+..++.-++.|+.|+|++|+++...  .+..++      .|++|||++|.+.....- -.++. |+
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~------~LkhLDlsyN~L~~vp~l~~~gc~-L~  235 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLP------KLKHLDLSYNCLRHVPQLSMVGCK-LQ  235 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcc------cccccccccchhccccccchhhhh-he
Confidence            344555555555555555555566666666666655322  444444      566666666665532211 12222 66


Q ss_pred             EEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCccc
Q 046848          370 RLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT  428 (956)
Q Consensus       370 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  428 (956)
                      .|.+++|.++..  ..+.++.+|+.||+++|-+.+...-.++..+..|+.|+|.+|++-
T Consensus       236 ~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  236 LLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            666666666533  345566666677777776665554445566666666777776653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=2.9e-07  Score=91.94  Aligned_cols=89  Identities=25%  Similarity=0.229  Sum_probs=53.0

Q ss_pred             ccccCCCEEeCCCCCCCCC-CCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCC
Q 046848          110 LILQHLTYLDLSGNNFSGS-SIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSS  188 (956)
Q Consensus       110 ~~l~~L~~L~Ls~n~~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~  188 (956)
                      ...++++.|||.+|.++.- ++...+.++++|++|+|+.|.+...|-..-..+.+|++|-|.+..+.-...-+.+..++.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            3456777778887777632 233445677778888887777664332221345577777777666544444444555556


Q ss_pred             CcEEeccccc
Q 046848          189 LIYLDLSFSN  198 (956)
Q Consensus       189 L~~L~Ls~n~  198 (956)
                      +++|.+|.|.
T Consensus       148 vtelHmS~N~  157 (418)
T KOG2982|consen  148 VTELHMSDNS  157 (418)
T ss_pred             hhhhhhccch
Confidence            6666555553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=9.3e-08  Score=95.40  Aligned_cols=228  Identities=22%  Similarity=0.244  Sum_probs=146.3

Q ss_pred             CEEeCCCCCCCCCCCCccccCCC--CCCEEecCCCCCCCC-CCccCCCC-CCCcEEECCCCCCCCCCCccccCCCCCCcE
Q 046848          116 TYLDLSGNNFSGSSIPEFIGSLS--KLSYLGLSNTEFAGP-IPLQLGNL-SRLQVLDIGFNSLISGENLEWLSHLSSLIY  191 (956)
Q Consensus       116 ~~L~Ls~n~~~~~~~p~~l~~l~--~L~~L~Ls~n~l~~~-~p~~l~~L-~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~  191 (956)
                      +.||+.+-.+.    |..++.+.  ...++.+........ +.+.+.-. +.||+||||+..+........+.+|++|+.
T Consensus       139 ~~lDl~~r~i~----p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~  214 (419)
T KOG2120|consen  139 QTLDLTGRNIH----PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN  214 (419)
T ss_pred             eeeccCCCccC----hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence            45677666554    33344332  334444443322211 12222212 358888888877643344445788899999


Q ss_pred             EecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcch-hhHhhcccccce
Q 046848          192 LDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYP-WLFNVSSNLVEL  270 (956)
Q Consensus       192 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~~~~~L~~~  270 (956)
                      |.+.++++.+  .+...+++-.+|+.|+++.|.--..... ..+...++.|+.|+++++.+..++-. .+......+ ..
T Consensus       215 lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~n~~-~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l-~~  290 (419)
T KOG2120|consen  215 LSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTENAL-QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL-TQ  290 (419)
T ss_pred             ccccccccCc--HHHHHHhccccceeeccccccccchhHH-HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh-hh
Confidence            9999988887  5677888889999999988753222221 33455569999999999987654432 233444446 77


Q ss_pred             EEecccccc---cCCCcccCCCCCCcEEECCCCc-Ccc-ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCC
Q 046848          271 INLGSNQLQ---GSIPEAFGHMPSLNTLFLASNQ-FRE-IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSL  345 (956)
Q Consensus       271 L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n~-l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L  345 (956)
                      |+++++.-.   ..+..--..+++|.+|||++|. ++. .-..|..++.|++|.++.|.  +.+|+.+-.+.   ..++|
T Consensus       291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~---s~psl  365 (419)
T KOG2120|consen  291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELN---SKPSL  365 (419)
T ss_pred             hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeec---cCcce
Confidence            888876422   1222233578999999999985 343 44567889999999999998  45677665443   23399


Q ss_pred             CEEEccCCcCc
Q 046848          346 AWLFLDSNEIT  356 (956)
Q Consensus       346 ~~L~Ls~n~l~  356 (956)
                      .+|+..++--.
T Consensus       366 ~yLdv~g~vsd  376 (419)
T KOG2120|consen  366 VYLDVFGCVSD  376 (419)
T ss_pred             EEEEeccccCc
Confidence            99999887443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.04  E-value=3.7e-07  Score=80.70  Aligned_cols=82  Identities=23%  Similarity=0.261  Sum_probs=37.1

Q ss_pred             CCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEcc
Q 046848          585 LAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLK  664 (956)
Q Consensus       585 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~  664 (956)
                      |+..+|++|.+....+..-..++.++.|++++|.|+ .+|..+..++.|+.|+++.|.+. ..|.-++. +.+|-.|+..
T Consensus        55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~Lds~  131 (177)
T KOG4579|consen   55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDMLDSP  131 (177)
T ss_pred             EEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHhcCC
Confidence            334444454444222222222334445555555554 34444555555555555555554 44444442 4455555555


Q ss_pred             CCccc
Q 046848          665 SNKFN  669 (956)
Q Consensus       665 ~N~l~  669 (956)
                      +|.+.
T Consensus       132 ~na~~  136 (177)
T KOG4579|consen  132 ENARA  136 (177)
T ss_pred             CCccc
Confidence            55443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.00  E-value=2.7e-07  Score=96.72  Aligned_cols=302  Identities=20%  Similarity=0.152  Sum_probs=140.4

Q ss_pred             CCCEEeCCCCCCCCC-CCCccccCCCCCCEEecCCCC-CCCCCCccC-CCCCCCcEEECCCCCCCCCCCccc-cCCCCCC
Q 046848          114 HLTYLDLSGNNFSGS-SIPEFIGSLSKLSYLGLSNTE-FAGPIPLQL-GNLSRLQVLDIGFNSLISGENLEW-LSHLSSL  189 (956)
Q Consensus       114 ~L~~L~Ls~n~~~~~-~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l-~~L~~L~~L~Ls~n~~~~~~~~~~-l~~l~~L  189 (956)
                      .|+.|.+.++.-.+. ++-.+...++++++|++.++. ++...-..+ ..+++|++|++..|...+...... ...+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            456666666543221 122334456666666666654 221111112 245666666666654333333332 2456666


Q ss_pred             cEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCC-cCCCCcchhhHhhccccc
Q 046848          190 IYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGN-NLTDSIYPWLFNVSSNLV  268 (956)
Q Consensus       190 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~L~  268 (956)
                      ++++++.+.--...++-....++..++.+.+.+|.-.+.-.. .........+..+++..+ .+++.--..+......| 
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l-~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l-  296 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEAL-LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL-  296 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHH-HHHhccChHhhccchhhhccccchHHHHHhhhhhHh-
Confidence            666666554222122222333444455554444432111000 001111122333333332 22222211122222224 


Q ss_pred             ceEEecccccccC--CCcccCCCCCCcEEECCCCc-Ccc--ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccC
Q 046848          269 ELINLGSNQLQGS--IPEAFGHMPSLNTLFLASNQ-FRE--IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT  343 (956)
Q Consensus       269 ~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~-l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~  343 (956)
                      +.++.+++...+.  +..--.+..+|+.|.+++++ ++.  +..-=.+.+.|+.+++..+......  .+..+..+|  +
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sls~~C--~  372 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASLSRNC--P  372 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhhccCC--c
Confidence            5555555433211  11112456677777777765 333  2111245677777777776543221  233333221  2


Q ss_pred             CCCEEEccCCcCcccC--CC----CCCCCCCCEEEeeccccc-cccchhhcCCCCCCEEECcCcc-CccccCHHhhhCCC
Q 046848          344 SLAWLFLDSNEITGSL--PN----FGGFSSLKRLSIANNRLN-GTINKSVGQLVKLESLFLHNNS-LRGVISEAFLSNLS  415 (956)
Q Consensus       344 ~L~~L~Ls~n~l~~~~--~~----~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~  415 (956)
                      .|+.+.+++|......  ..    -..+..|+.+.+++++.. ......+..+++|+.+++..++ ++......+...++
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp  452 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP  452 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence            6777777777554322  11    234566777778777653 2333455667788888877774 33333334556666


Q ss_pred             CCCEEE
Q 046848          416 NLTILY  421 (956)
Q Consensus       416 ~L~~L~  421 (956)
                      ++++..
T Consensus       453 ~i~v~a  458 (483)
T KOG4341|consen  453 NIKVHA  458 (483)
T ss_pred             cceehh
Confidence            666543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.93  E-value=1.3e-06  Score=86.14  Aligned_cols=89  Identities=25%  Similarity=0.182  Sum_probs=49.5

Q ss_pred             CCCCcCEEEccCceeeee----CCccccCCCCCcEEecCCccccccCChhHhh-----cCccCcEEEccCCcccccCCcc
Q 046848          605 FLKNLQSLSLYNNRLTGE----LPSFFTNGSQLTLMDLGKNGLSGEIPTWIGE-----GLVNLVVLSLKSNKFNGSIPLQ  675 (956)
Q Consensus       605 ~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~-----~l~~L~~L~L~~N~l~~~~p~~  675 (956)
                      .+.+|+.|||..|-++-.    +..++...+.|+.|.+.+|-++..-...++.     -.++|..|...+|...+.+-..
T Consensus       212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~  291 (388)
T COG5238         212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILD  291 (388)
T ss_pred             HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeee
Confidence            345666666666655521    2223344455677777777666443333332     2456777777777665433211


Q ss_pred             -------ccCCCCcCEEeccCCcCC
Q 046848          676 -------LCHLANVQILDLSSNNIS  693 (956)
Q Consensus       676 -------l~~l~~L~~L~Ls~N~l~  693 (956)
                             -..++-|..|.+.+|+|.
T Consensus       292 ~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         292 ISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             echhhhhhcccHHHHHHHHccCcch
Confidence                   134566777777778776

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.84  E-value=5.1e-05  Score=82.30  Aligned_cols=77  Identities=17%  Similarity=0.178  Sum_probs=52.3

Q ss_pred             cCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCc
Q 046848          603 IGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANV  682 (956)
Q Consensus       603 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  682 (956)
                      +..+.+++.|++++|.++ .+|.   --.+|+.|++++|.-...+|..+.   ++|+.|++++|.....+|      ++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~sLP------~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEISGLP------ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh---hhhhheEccCcccccccc------ccc
Confidence            344688999999999887 5562   224699999988554447776543   478899999883323455      357


Q ss_pred             CEEeccCCcC
Q 046848          683 QILDLSSNNI  692 (956)
Q Consensus       683 ~~L~Ls~N~l  692 (956)
                      +.|++++|..
T Consensus       115 e~L~L~~n~~  124 (426)
T PRK15386        115 RSLEIKGSAT  124 (426)
T ss_pred             ceEEeCCCCC
Confidence            7777776654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.83  E-value=2.3e-05  Score=77.62  Aligned_cols=117  Identities=21%  Similarity=0.185  Sum_probs=59.1

Q ss_pred             CCCCCcEEECCCCcCccccc-----cccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCC
Q 046848          288 HMPSLNTLFLASNQFREIPK-----SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNF  362 (956)
Q Consensus       288 ~l~~L~~L~Ls~n~l~~ip~-----~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~  362 (956)
                      +-|.|++.....|++...|.     .+..-..|+.+.+..|.+.-.-...+..+                        .+
T Consensus       155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~------------------------gl  210 (388)
T COG5238         155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFL------------------------GL  210 (388)
T ss_pred             cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHH------------------------HH
Confidence            44667777777777665432     23333567777777776653211111110                        02


Q ss_pred             CCCCCCCEEEeecccccc----ccchhhcCCCCCCEEECcCccCccccCHHhhhC-----CCCCCEEEcCCCccc
Q 046848          363 GGFSSLKRLSIANNRLNG----TINKSVGQLVKLESLFLHNNSLRGVISEAFLSN-----LSNLTILYLADNSLT  428 (956)
Q Consensus       363 ~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-----l~~L~~L~Ls~n~l~  428 (956)
                      ..+.+|+.||+.+|.++-    .+...+..++.|+.|.+..|-++......++..     .++|..|-..+|...
T Consensus       211 ~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         211 FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            233455555555555542    122344555666777777776655444443332     345555555555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.80  E-value=1.3e-05  Score=57.60  Aligned_cols=36  Identities=36%  Similarity=0.587  Sum_probs=17.0

Q ss_pred             cCCEEEcccccccccCCccccCCCCCCEEECCCCccC
Q 046848          780 GLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFF  816 (956)
Q Consensus       780 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  816 (956)
                      +|++|++++|+|+ .+|+.++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555554 34444555555555555555544

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.70  E-value=4e-05  Score=55.17  Aligned_cols=37  Identities=38%  Similarity=0.584  Sum_probs=27.1

Q ss_pred             CCCcEEECCCCcCccccccccCCCCCCEEEccCCCCC
Q 046848          290 PSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLR  326 (956)
Q Consensus       290 ~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~  326 (956)
                      ++|++|++++|+++++|+.+.++++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            4677888888888887777778888888888888776

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.67  E-value=3.8e-06  Score=88.30  Aligned_cols=88  Identities=15%  Similarity=0.108  Sum_probs=49.0

Q ss_pred             CCCcEEECCCCCCCCCCCcc-ccCCCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccC
Q 046848          162 SRLQVLDIGFNSLISGENLE-WLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSST  240 (956)
Q Consensus       162 ~~L~~L~Ls~n~~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  240 (956)
                      ..|+.|.+.++.-....... ...+++++++|.+.++...+.......-..+++|+++++..|..-..... ..+...++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L-k~la~gC~  216 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL-KYLAEGCR  216 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH-HHHHHhhh
Confidence            35778888887643333332 24678888888887776433333444455677777777766432211110 22333446


Q ss_pred             CccEEEcCCC
Q 046848          241 SLEVIVILGN  250 (956)
Q Consensus       241 ~L~~L~L~~n  250 (956)
                      +|++++++++
T Consensus       217 kL~~lNlSwc  226 (483)
T KOG4341|consen  217 KLKYLNLSWC  226 (483)
T ss_pred             hHHHhhhccC
Confidence            6666666655

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.51  E-value=0.00021  Score=68.22  Aligned_cols=106  Identities=20%  Similarity=0.249  Sum_probs=77.6

Q ss_pred             CCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcc--cCCCCCCCCC
Q 046848          290 PSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITG--SLPNFGGFSS  367 (956)
Q Consensus       290 ~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~l~~  367 (956)
                      .+...+||++|.+..++ .|..++.|..|.|.+|+++...|..-.-++      +|..|.|.+|++..  .+..+..++.
T Consensus        42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p------~l~~L~LtnNsi~~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLP------NLKTLILTNNSIQELGDLDPLASCPK  114 (233)
T ss_pred             cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhcc------ccceEEecCcchhhhhhcchhccCCc
Confidence            45677888888887763 467788888888888888877666555555      78888888888873  4445788888


Q ss_pred             CCEEEeecccccccc---chhhcCCCCCCEEECcCccC
Q 046848          368 LKRLSIANNRLNGTI---NKSVGQLVKLESLFLHNNSL  402 (956)
Q Consensus       368 L~~L~Ls~n~l~~~~---~~~l~~l~~L~~L~L~~n~l  402 (956)
                      |++|.+-+|.++..-   ...+..+|+|+.||...-..
T Consensus       115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             cceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            888888888876432   13456677888887765543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.46  E-value=3.6e-05  Score=90.93  Aligned_cols=146  Identities=23%  Similarity=0.271  Sum_probs=86.6

Q ss_pred             cCCCEEeCCCCCCCCCCCCcccc-CCCCCCEEecCCCCCCC-CCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCc
Q 046848          113 QHLTYLDLSGNNFSGSSIPEFIG-SLSKLSYLGLSNTEFAG-PIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLI  190 (956)
Q Consensus       113 ~~L~~L~Ls~n~~~~~~~p~~l~-~l~~L~~L~Ls~n~l~~-~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  190 (956)
                      .+|++||++|...-...=|..++ .||.|+.|.+++-.+.. ..-....++++|..||+|+..+   ....+++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI---~nl~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI---SNLSGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc---cCcHHHhccccHH
Confidence            45777777775433222233333 56777777777765542 2233345677777777777765   3336677777777


Q ss_pred             EEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCC---ccccccccCCccEEEcCCCcCCCCcchhhHh
Q 046848          191 YLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPS---SDLYLNSSTSLEVIVILGNNLTDSIYPWLFN  262 (956)
Q Consensus       191 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  262 (956)
                      .|.+.+-.+..... ...+-+|++|+.||+|..........   -.+...-+++|+.||.++..+.+.+-..+.+
T Consensus       199 ~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~  272 (699)
T KOG3665|consen  199 VLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN  272 (699)
T ss_pred             HHhccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence            77777666665432 34556677777777776544332200   0122333588889998888777766555444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.46  E-value=0.00048  Score=74.91  Aligned_cols=31  Identities=32%  Similarity=0.441  Sum_probs=15.1

Q ss_pred             CCCEEEcCCCcccccCCCCcCCCCCcCEEEccCc
Q 046848          584 SLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNN  617 (956)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  617 (956)
                      +|++|++++|... ..|..+.  .+|+.|+++.+
T Consensus       157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            4555555555543 2233222  45666666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.46  E-value=3.4e-05  Score=91.13  Aligned_cols=137  Identities=20%  Similarity=0.250  Sum_probs=89.2

Q ss_pred             CCCCEEecCCCCCC-CCCCccCC-CCCCCcEEECCCCCCCCCCCccccCCCCCCcEEecccccCCCCchhHHhhcCCCCC
Q 046848          138 SKLSYLGLSNTEFA-GPIPLQLG-NLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSL  215 (956)
Q Consensus       138 ~~L~~L~Ls~n~l~-~~~p~~l~-~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  215 (956)
                      .+|++||+++.... ..-|..++ .||+|+.|.+++=.+..........++++|+.||+|+.+++.+    ..++.+++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccH
Confidence            67888888886533 23333444 5788888888876553333334457788899999998888874    667888888


Q ss_pred             CEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCc--chhh----HhhcccccceEEecccccccCC
Q 046848          216 KALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSI--YPWL----FNVSSNLVELINLGSNQLQGSI  282 (956)
Q Consensus       216 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l----~~~~~~L~~~L~Ls~n~l~~~~  282 (956)
                      +.|.+.+-.+..... ...++++ ++|++||+|.......-  ....    ..++. | +.||.|+..+.+.+
T Consensus       198 q~L~mrnLe~e~~~~-l~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lpe-L-rfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQD-LIDLFNL-KKLRVLDISRDKNNDDTKIIEQYLECGMVLPE-L-RFLDCSGTDINEEI  266 (699)
T ss_pred             HHHhccCCCCCchhh-HHHHhcc-cCCCeeeccccccccchHHHHHHHHhcccCcc-c-cEEecCCcchhHHH
Confidence            888888776654211 1345555 88999998876544321  1111    12333 7 88888877766543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.44  E-value=9e-05  Score=73.96  Aligned_cols=115  Identities=23%  Similarity=0.252  Sum_probs=75.1

Q ss_pred             cccccccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCC--CCCCCCCccCCCCCCCcEEECCCCCCCCCCCc
Q 046848          103 GTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNT--EFAGPIPLQLGNLSRLQVLDIGFNSLISGENL  180 (956)
Q Consensus       103 g~l~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~  180 (956)
                      |.+..-.-.+..|+.|++.+..++..   ..+..+++|++|.++.|  ++.+.++....++++|++|++++|++......
T Consensus        33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl  109 (260)
T KOG2739|consen   33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL  109 (260)
T ss_pred             CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence            34444445566677777777666522   34556889999999999  66777777777779999999999987444444


Q ss_pred             cccCCCCCCcEEecccccCCCCchhH-HhhcCCCCCCEEEe
Q 046848          181 EWLSHLSSLIYLDLSFSNLSKFSNWM-QVLSKLDSLKALYL  220 (956)
Q Consensus       181 ~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~l~~l~~L~~L~l  220 (956)
                      ..+..+.+|..|++..|........- ..+.-+++|+.|+-
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            55667777778888877665542211 23344555555543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.31  E-value=0.00023  Score=68.02  Aligned_cols=106  Identities=26%  Similarity=0.285  Sum_probs=68.9

Q ss_pred             CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcEEe
Q 046848          114 HLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLD  193 (956)
Q Consensus       114 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~  193 (956)
                      ....+||++|.+..  + ..+..++.|.+|.|.+|+|+..-|.--.-+++|+.|.|.+|.+...+....+..|++|++|.
T Consensus        43 ~~d~iDLtdNdl~~--l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhh--c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            45678888887762  2 34667888888888888888555554455677888888888776666666677777777777


Q ss_pred             cccccCCCCchh-HHhhcCCCCCCEEEecC
Q 046848          194 LSFSNLSKFSNW-MQVLSKLDSLKALYLIS  222 (956)
Q Consensus       194 Ls~n~l~~~~~~-~~~l~~l~~L~~L~l~~  222 (956)
                      +-+|........ ...+-.+|+|+.||...
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            777766553221 12233444444444433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.10  E-value=0.00018  Score=71.85  Aligned_cols=115  Identities=20%  Similarity=0.247  Sum_probs=78.2

Q ss_pred             CCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCcc-ccCCCCCCcEEecccccCCCCchhHHh
Q 046848          130 IPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLE-WLSHLSSLIYLDLSFSNLSKFSNWMQV  208 (956)
Q Consensus       130 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~  208 (956)
                      +......+..|+.|.+.+..++..  ..+-.|++|+.|++|.|+........ ....+++|++|++++|++..+.. ...
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRP  111 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cch
Confidence            444455677888888888877622  34667899999999999432233333 34567999999999999887533 455


Q ss_pred             hcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEc
Q 046848          209 LSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVI  247 (956)
Q Consensus       209 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L  247 (956)
                      +..+.+|..|++..|..+...-.....+..+++|.+||-
T Consensus       112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            677888888888888776633323344555566666553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.08  E-value=0.0014  Score=60.81  Aligned_cols=123  Identities=20%  Similarity=0.242  Sum_probs=55.3

Q ss_pred             ccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCc
Q 046848          577 DCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLV  656 (956)
Q Consensus       577 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~  656 (956)
                      .+|.++++|+.+.+.. .+......+|.++++|+.+.+.++ +...-...|.++++++.+.+.+ .+. .++...+..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence            3455666666666653 344455556666666777776664 5545555666666677777754 333 45555554566


Q ss_pred             cCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccC
Q 046848          657 NLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAM  706 (956)
Q Consensus       657 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  706 (956)
                      +|+.+++..+ +...-...+.+. +|+.+.+.. .+.......|.++++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            7777777554 443334455555 777777665 4444444556555444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.77  E-value=0.0043  Score=57.45  Aligned_cols=98  Identities=19%  Similarity=0.233  Sum_probs=57.9

Q ss_pred             CCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCC
Q 046848          600 PDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHL  679 (956)
Q Consensus       600 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  679 (956)
                      ..+|.++++|+.+.+.. .+.......|.++++|+.+++.++ +. .++...+.++++++.+.+.+ .+.......|..+
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccc
Confidence            45677888888888875 566677778888888888888875 65 77777776777888888865 4443444566678


Q ss_pred             CCcCEEeccCCcCCCCcChhccc
Q 046848          680 ANVQILDLSSNNISGIIPKCFNN  702 (956)
Q Consensus       680 ~~L~~L~Ls~N~l~~~~p~~~~~  702 (956)
                      ++|+.+++..+ +.......|.+
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~  102 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSN  102 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT
T ss_pred             ccccccccCcc-ccEEchhhhcC
Confidence            88888888665 44333344444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.25  E-value=0.00023  Score=71.10  Aligned_cols=84  Identities=20%  Similarity=0.301  Sum_probs=58.6

Q ss_pred             CCCEEEccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcC
Q 046848          344 SLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLA  423 (956)
Q Consensus       344 ~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls  423 (956)
                      +.+.|+..+|.+.. +.....++.|+.|.|+-|+|+..  ..+..|++|++|+|..|.|...-.-.++.++++|+.|.|.
T Consensus        20 ~vkKLNcwg~~L~D-Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDD-ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HhhhhcccCCCccH-HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            55566666666552 22245667777788887877654  3466788888888888888776666677888888888888


Q ss_pred             CCccccc
Q 046848          424 DNSLTLE  430 (956)
Q Consensus       424 ~n~l~~~  430 (956)
                      .|+-.+.
T Consensus        97 ENPCc~~  103 (388)
T KOG2123|consen   97 ENPCCGE  103 (388)
T ss_pred             cCCcccc
Confidence            8776543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.11  E-value=0.00026  Score=70.66  Aligned_cols=103  Identities=26%  Similarity=0.252  Sum_probs=63.5

Q ss_pred             ccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcE
Q 046848          112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIY  191 (956)
Q Consensus       112 l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~  191 (956)
                      +...+.|++-++.++++   ....+++.|++|.||-|.|+.--  .+..|++|++|.|..|.|.....+..+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            55667777777777754   23456777888888888776332  35667777777777776655555566677777777


Q ss_pred             EecccccCCCCch---hHHhhcCCCCCCEEE
Q 046848          192 LDLSFSNLSKFSN---WMQVLSKLDSLKALY  219 (956)
Q Consensus       192 L~Ls~n~l~~~~~---~~~~l~~l~~L~~L~  219 (956)
                      |-|..|...+..+   -...+..||+|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            7777666544311   012344455555553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.68  E-value=0.0012  Score=76.94  Aligned_cols=35  Identities=20%  Similarity=0.243  Sum_probs=17.0

Q ss_pred             CCEEEeeccccccc-cchhhcC-CCCCCEEECcCccC
Q 046848          368 LKRLSIANNRLNGT-INKSVGQ-LVKLESLFLHNNSL  402 (956)
Q Consensus       368 L~~L~Ls~n~l~~~-~~~~l~~-l~~L~~L~L~~n~l  402 (956)
                      ++.|+++.+..... .-..... +..++.+++.++..
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            66666666554311 1111111 55566666666643

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.19  E-value=0.0079  Score=35.89  Aligned_cols=11  Identities=55%  Similarity=0.525  Sum_probs=4.6

Q ss_pred             CEEEccccccc
Q 046848          782 IALNLSRNTLT  792 (956)
Q Consensus       782 ~~L~Ls~N~l~  792 (956)
                      ++|||++|+|+
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            34444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.16  E-value=0.0069  Score=36.14  Aligned_cols=21  Identities=57%  Similarity=0.857  Sum_probs=14.1

Q ss_pred             CCCEEECCCCccCcCCcccccC
Q 046848          804 SLDFLDLSRNQFFGSIPSSLSQ  825 (956)
Q Consensus       804 ~L~~L~Ls~N~l~~~ip~~l~~  825 (956)
                      +|++|||++|+++ .+|+.|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4677777777777 56666554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.69  E-value=0.01  Score=69.21  Aligned_cols=58  Identities=19%  Similarity=0.169  Sum_probs=29.7

Q ss_pred             ceEEecccc-cccCCCcccC-CCCCCcEEECCCCc-Ccc--ccccccCCCCCCEEEccCCCCC
Q 046848          269 ELINLGSNQ-LQGSIPEAFG-HMPSLNTLFLASNQ-FRE--IPKSLGNMCNLKSLTLSYNTLR  326 (956)
Q Consensus       269 ~~L~Ls~n~-l~~~~p~~l~-~l~~L~~L~Ls~n~-l~~--ip~~l~~l~~L~~L~Ls~n~l~  326 (956)
                      +.++++++. ++...-..+. .+++|++|.+.++. +++  +-.....+++|++|+++++...
T Consensus       246 ~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  246 KSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             CccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            445555444 3322222222 25666666666555 444  3334455666777777766543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.33  E-value=0.00077  Score=76.40  Aligned_cols=84  Identities=26%  Similarity=0.243  Sum_probs=43.4

Q ss_pred             CCCEEEcCCCcccccC----CCCcCCCCCcCEEEccCceeeeeCC----ccccCC-CCCcEEecCCcccccc----CChh
Q 046848          584 SLAILNLANNSFFGKI----PDSIGFLKNLQSLSLYNNRLTGELP----SFFTNG-SQLTLMDLGKNGLSGE----IPTW  650 (956)
Q Consensus       584 ~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~p----~~~~~l-~~L~~L~Ls~N~l~~~----ip~~  650 (956)
                      .+..|.|.+|.+....    ...+.....|+.|++++|.+...--    ..+... ..+++|++..|.+++.    +...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            3667777777776332    2234556667777777777662211    112222 3455566666665532    2233


Q ss_pred             HhhcCccCcEEEccCCcc
Q 046848          651 IGEGLVNLVVLSLKSNKF  668 (956)
Q Consensus       651 ~~~~l~~L~~L~L~~N~l  668 (956)
                      +.. ...+++++++.|.+
T Consensus       168 L~~-~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  168 LEK-NEHLTELDLSLNGL  184 (478)
T ss_pred             Hhc-ccchhHHHHHhccc
Confidence            332 44555555555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.09  E-value=0.0067  Score=59.32  Aligned_cols=81  Identities=22%  Similarity=0.238  Sum_probs=72.0

Q ss_pred             eeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcC
Q 046848          757 VKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSY  836 (956)
Q Consensus       757 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  836 (956)
                      .+.||++.|++. ..-..|+.++.|..||++.|++. ..|+.++++..+..+++..|..+ ..|.++..++.+++++.-.
T Consensus        44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~  120 (326)
T KOG0473|consen   44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK  120 (326)
T ss_pred             eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence            478999999987 45567788899999999999998 78999999999999999999988 6789999999999999999


Q ss_pred             Ccce
Q 046848          837 NNLS  840 (956)
Q Consensus       837 N~l~  840 (956)
                      |+|.
T Consensus       121 ~~~~  124 (326)
T KOG0473|consen  121 TEFF  124 (326)
T ss_pred             Ccch
Confidence            9874

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.61  E-value=0.0012  Score=74.85  Aligned_cols=90  Identities=26%  Similarity=0.257  Sum_probs=48.9

Q ss_pred             CCCCcCEEEccCceeeee----CCccccCCCC-CcEEecCCccccccCChhHhh---cC-ccCcEEEccCCcccccC---
Q 046848          605 FLKNLQSLSLYNNRLTGE----LPSFFTNGSQ-LTLMDLGKNGLSGEIPTWIGE---GL-VNLVVLSLKSNKFNGSI---  672 (956)
Q Consensus       605 ~l~~L~~L~L~~N~l~~~----~p~~~~~l~~-L~~L~Ls~N~l~~~ip~~~~~---~l-~~L~~L~L~~N~l~~~~---  672 (956)
                      ...++++|.+++|.++..    +...+...+. +..|++..|++.+..-..+..   .+ ..+++++++.|.|+..-   
T Consensus       202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~  281 (478)
T KOG4308|consen  202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD  281 (478)
T ss_pred             ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence            345566666666665511    1122333344 555777777665332111111   12 35577777777776432   


Q ss_pred             -CccccCCCCcCEEeccCCcCCC
Q 046848          673 -PLQLCHLANVQILDLSSNNISG  694 (956)
Q Consensus       673 -p~~l~~l~~L~~L~Ls~N~l~~  694 (956)
                       ...+..++.++++.+++|.+..
T Consensus       282 L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  282 LAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHhhhHHHHHhhcccCcccc
Confidence             3345566677788888887764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.03  E-value=0.14  Score=28.30  Aligned_cols=13  Identities=38%  Similarity=0.621  Sum_probs=4.6

Q ss_pred             CCcEEecCCcccc
Q 046848          632 QLTLMDLGKNGLS  644 (956)
Q Consensus       632 ~L~~L~Ls~N~l~  644 (956)
                      +|+.|+|++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.96  E-value=0.15  Score=28.17  Aligned_cols=16  Identities=38%  Similarity=0.644  Sum_probs=6.3

Q ss_pred             CCcEEECCCCcCcccc
Q 046848          291 SLNTLFLASNQFREIP  306 (956)
Q Consensus       291 ~L~~L~Ls~n~l~~ip  306 (956)
                      +|+.|++++|+++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555554443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.19  E-value=0.27  Score=30.61  Aligned_cols=21  Identities=33%  Similarity=0.390  Sum_probs=14.9

Q ss_pred             CCCcEEecCCccccccCChhHh
Q 046848          631 SQLTLMDLGKNGLSGEIPTWIG  652 (956)
Q Consensus       631 ~~L~~L~Ls~N~l~~~ip~~~~  652 (956)
                      ++|+.|+|++|+++ .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            56777777777777 7777665

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.19  E-value=0.27  Score=30.61  Aligned_cols=21  Identities=33%  Similarity=0.390  Sum_probs=14.9

Q ss_pred             CCCcEEecCCccccccCChhHh
Q 046848          631 SQLTLMDLGKNGLSGEIPTWIG  652 (956)
Q Consensus       631 ~~L~~L~Ls~N~l~~~ip~~~~  652 (956)
                      ++|+.|+|++|+++ .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            56777777777777 7777665

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.94  E-value=0.019  Score=56.24  Aligned_cols=82  Identities=18%  Similarity=0.140  Sum_probs=55.7

Q ss_pred             CcEEEEECCCCCCCCCCCCccccccccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCC
Q 046848           83 GHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLS  162 (956)
Q Consensus        83 ~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~  162 (956)
                      .+|+.||++..      .+. .+-.-++.++.|..||++.|.+.  .+|.+++.+..++++++..|..+ ..|.++++++
T Consensus        42 kr~tvld~~s~------r~v-n~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~  111 (326)
T KOG0473|consen   42 KRVTVLDLSSN------RLV-NLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP  111 (326)
T ss_pred             ceeeeehhhhh------HHH-hhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence            46777777662      222 22345666777777777777776  56777777777777777777666 6777777777


Q ss_pred             CCcEEECCCCCC
Q 046848          163 RLQVLDIGFNSL  174 (956)
Q Consensus       163 ~L~~L~Ls~n~~  174 (956)
                      +++++++-.+.+
T Consensus       112 ~~k~~e~k~~~~  123 (326)
T KOG0473|consen  112 HPKKNEQKKTEF  123 (326)
T ss_pred             CcchhhhccCcc
Confidence            777777766654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.02  E-value=0.53  Score=29.25  Aligned_cols=16  Identities=44%  Similarity=0.403  Sum_probs=9.3

Q ss_pred             CCCCEEECCCCccCcC
Q 046848          803 KSLDFLDLSRNQFFGS  818 (956)
Q Consensus       803 ~~L~~L~Ls~N~l~~~  818 (956)
                      ++|+.|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666533

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.02  E-value=0.53  Score=29.25  Aligned_cols=16  Identities=44%  Similarity=0.403  Sum_probs=9.3

Q ss_pred             CCCCEEECCCCccCcC
Q 046848          803 KSLDFLDLSRNQFFGS  818 (956)
Q Consensus       803 ~~L~~L~Ls~N~l~~~  818 (956)
                      ++|+.|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666533

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.47  E-value=0.26  Score=30.01  Aligned_cols=12  Identities=50%  Similarity=0.659  Sum_probs=4.1

Q ss_pred             CCEEEccccccc
Q 046848          781 LIALNLSRNTLT  792 (956)
Q Consensus       781 L~~L~Ls~N~l~  792 (956)
                      |+.|+|++|+|+
T Consensus         4 L~~L~l~~n~i~   15 (24)
T PF13516_consen    4 LETLDLSNNQIT   15 (24)
T ss_dssp             -SEEE-TSSBEH
T ss_pred             CCEEEccCCcCC
Confidence            344444444433

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	956
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-47
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-47
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-18
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		7e-08
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		4e-07
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		1e-05
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		1e-05
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		3e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-05
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		7e-05
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		1e-04
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-04
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		3e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		3e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		3e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		3e-04
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		5e-04
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		5e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  186 bits (473), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 184/603 (30%), Positives = 283/603 (46%), Gaps = 65/603 (10%)
Query: 315 LKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIA 374
           LK L +S N + GD+        D     +L +L + SN  +  +P  G  S+L+ L I+
Sbjct: 180 LKHLAISGNKISGDV--------DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDIS 231
Query: 375 NNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHD 434
            N+L+G  ++++    +L+ L + +N   G I    L +L  L+   LA+N  T E    
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS---LAENKFTGE---- 284
Query: 435 WIPPF------QLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTY 488
            IP F       L+ ++L         P +  + + + SL +S++  S  +P     +  
Sbjct: 285 -IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343
Query: 489 NLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPI-PQLPLNAS----FLNLSK 543
            L   +LS N+  G+LP   +        +D+SSN F GPI P L  N       L L  
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 544 NKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSI 603
           N F+G I    S    +L  + LS N LSG +P        L  L L  N   G+IP  +
Sbjct: 404 NGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 604 GFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGXXXXXXXXX 663
            ++K L++L L  N LTGE+PS  +N + L  + L  N L+GEIP WIG           
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKL 521
Query: 664 XXXXFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLT--LISNYY 721
               F+G+IP +L    ++  LDL++N  +G IP       AM  + G      +    Y
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP------AAMFKQSGKIAANFIAGKRY 575
Query: 722 TSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTL------------------------GLV 757
             +  D +K  + +    +L ++G + E  + L                        G +
Sbjct: 576 VYIKNDGMK-KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG 817
             LD+S N L G +P+EI  +  L  LNL  N ++G I  ++G L+ L+ LDLS N+  G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNE-LCGLPLPNKCPDEDS 876
            IP ++S L+ L+ +DLS NNLSG IP   Q ++F  + +  N  LCG PLP +C D  +
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC-DPSN 752
Query: 877 APG 879
           A G
Sbjct: 753 ADG 755

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  186 bits (473), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 184/603 (30%), Positives = 283/603 (46%), Gaps = 65/603 (10%)
Query: 315 LKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIA 374
           LK L +S N + GD+        D     +L +L + SN  +  +P  G  S+L+ L I+
Sbjct: 177 LKHLAISGNKISGDV--------DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDIS 228
Query: 375 NNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHD 434
            N+L+G  ++++    +L+ L + +N   G I    L +L  L+   LA+N  T E    
Sbjct: 229 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS---LAENKFTGE---- 281
Query: 435 WIPPF------QLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTY 488
            IP F       L+ ++L         P +  + + + SL +S++  S  +P     +  
Sbjct: 282 -IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 340
Query: 489 NLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPI-PQLPLNAS----FLNLSK 543
            L   +LS N+  G+LP   +        +D+SSN F GPI P L  N       L L  
Sbjct: 341 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 544 NKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSI 603
           N F+G I    S    +L  + LS N LSG +P        L  L L  N   G+IP  +
Sbjct: 401 NGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 604 GFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGXXXXXXXXX 663
            ++K L++L L  N LTGE+PS  +N + L  + L  N L+GEIP WIG           
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKL 518
Query: 664 XXXXFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLT--LISNYY 721
               F+G+IP +L    ++  LDL++N  +G IP       AM  + G      +    Y
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP------AAMFKQSGKIAANFIAGKRY 572
Query: 722 TSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTL------------------------GLV 757
             +  D +K  + +    +L ++G + E  + L                        G +
Sbjct: 573 VYIKNDGMK-KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 631
Query: 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG 817
             LD+S N L G +P+EI  +  L  LNL  N ++G I  ++G L+ L+ LDLS N+  G
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNE-LCGLPLPNKCPDEDS 876
            IP ++S L+ L+ +DLS NNLSG IP   Q ++F  + +  N  LCG PLP +C D  +
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC-DPSN 749
Query: 877 APG 879
           A G
Sbjct: 750 ADG 752

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 119/277 (42%), Gaps = 54/277 (19%)
Query: 593 NSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIG 652
           N+  G IP +I  L  L  L + +  ++G +P F +    L  +D   N LSG +P  I 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 653 EGXXXXXXXXXXXXXFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGS 712
                                     L N+  +    N ISG IP  + +F+ +      
Sbjct: 147 S-------------------------LPNLVGITFDGNRISGAIPDSYGSFSKL------ 175
Query: 713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVP 772
                   +TS+             +  LT K         L  V   DLS N L G+  
Sbjct: 176 --------FTSMT----------ISRNRLTGKIPPTFANLNLAFV---DLSRNMLEGDAS 214
Query: 773 EEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVM 832
                      ++L++N+L   +  K+G  K+L+ LDL  N+ +G++P  L+QL  L  +
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 833 DLSYNNLSGKIPSGTQLQSFSTSMYAGNE-LCGLPLP 868
           ++S+NNL G+IP G  LQ F  S YA N+ LCG PLP
Sbjct: 274 NVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 268 VELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYNTLR 326
           + L+ L  N+LQ      F  + +L TL++  N+ + +P  +   + NL  L L  N L+
Sbjct: 63  LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122
Query: 327 GDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINK 384
                +  +L      T L +L L  NE+  SLP   F   +SLK L + NN+L      
Sbjct: 123 SLPPRVFDSL------TKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEG 175
Query: 385 SVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
           +  +L +L++L L NN L+ V   AF S L  L +L L +N
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPEGAFDS-LEKLKMLQLQEN 215

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 101/245 (41%), Gaps = 43/245 (17%)
Query: 72  GWRG---VNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGS 128
           GW+    VNC  + G    L L  L+       KG  + S + L  L +LDLS N  S  
Sbjct: 305 GWQHLELVNC--KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS-- 360
Query: 129 SIPEFIXXXXXXXXXXXXNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGEN----LEWLS 184
                                F G         + L+ LD+ FN +I+  +    LE L 
Sbjct: 361 ---------------------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399
Query: 185 HLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEV 244
           HL      D   SNL + S +   LS    L+ L  +      T  + +   N  +SLEV
Sbjct: 400 HL------DFQHSNLKQMSEFSVFLS----LRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 245 IVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE 304
           + + GN+  ++  P +F    NL   ++L   QL+   P AF  + SL  L +ASNQ + 
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508
Query: 305 IPKSL 309
           +P  +
Sbjct: 509 VPDGI 513

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 12/163 (7%)
Query: 267 LVELINLGSN-QLQGSIPEAFGHMPSLNTLFLASNQFREI-PKSLGNMCNLKSLTLSYNT 324
           L+E ++L  N QL+   P  F  +  L+TL L     +E+ P     +  L+ L L  N 
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140
Query: 325 LRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTI 382
           L+    +  ++L +      L  LFL  N I+ S+P   F G  SL RL +  NR+    
Sbjct: 141 LQALPDDTFRDLGN------LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 383 NKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
             +   L +L +L+L  N+L  + +EA L+ L  L  L L DN
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDN 235

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 12/163 (7%)
Query: 267 LVELINLGSN-QLQGSIPEAFGHMPSLNTLFLASNQFREI-PKSLGNMCNLKSLTLSYNT 324
           L+E ++L  N QL+   P  F  +  L+TL L     +E+ P     +  L+ L L  N 
Sbjct: 80  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 139
Query: 325 LRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTI 382
           L+    +  ++L +      L  LFL  N I+ S+P   F G  SL RL +  NR+    
Sbjct: 140 LQALPDDTFRDLGN------LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVH 192
Query: 383 NKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
             +   L +L +L+L  N+L  + +EA L+ L  L  L L DN
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDN 234

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 20/150 (13%)
Query: 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSL--------TLSY 322
           ++  +N L  ++ E  GH+  L TL L  NQ +E+ K       +KSL        ++SY
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 323 NTLRGDL------------SEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKR 370
           +  +GD             S I+ +    C    +  L L SN+I           +L+ 
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQE 448
Query: 371 LSIANNRLNGTINKSVGQLVKLESLFLHNN 400
           L++A+N+L    +    +L  L+ ++LH N
Sbjct: 449 LNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 133/289 (46%), Gaps = 52/289 (17%)
Query: 147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
           N + A   PL   NL+ L  L + FN+ I+  +++ L +L++L  L+LS + +S  S   
Sbjct: 94  NNQIADITPL--ANLTNLTGLTL-FNNQIT--DIDPLKNLTNLNRLELSSNTISDIS--- 145
Query: 207 QVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTD-SIYPWLFNVSS 265
             LS L SL+ L   S  +    P ++L     T+LE + I  N ++D S+   L N+ S
Sbjct: 146 -ALSGLTSLQQLSFSSNQVTDLKPLANL-----TTLERLDISSNKVSDISVLAKLTNLES 199
Query: 266 NLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTL 325
            +       +NQ+    P   G + +L+ L L  NQ ++I  +L ++ NL  L L+ N  
Sbjct: 200 LIAT-----NNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQ- 250
Query: 326 RGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRL------- 378
                  I NL+     T L  L L +N+I+   P   G ++L  L +  N+L       
Sbjct: 251 -------ISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPIS 302
Query: 379 -------------NGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
                        N +    V  L KL+ LF +NN +  V S A L+N+
Sbjct: 303 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 351

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 133/289 (46%), Gaps = 52/289 (17%)
Query: 147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
           N + A   PL   NL+ L  L + FN+ I+  +++ L +L++L  L+LS + +S  S   
Sbjct: 94  NNQIADITPL--ANLTNLTGLTL-FNNQIT--DIDPLKNLTNLNRLELSSNTISDIS--- 145
Query: 207 QVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTD-SIYPWLFNVSS 265
             LS L SL+ L   S  +    P ++L     T+LE + I  N ++D S+   L N+ S
Sbjct: 146 -ALSGLTSLQQLNFSSNQVTDLKPLANL-----TTLERLDISSNKVSDISVLAKLTNLES 199
Query: 266 NLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTL 325
            +       +NQ+    P   G + +L+ L L  NQ ++I  +L ++ NL  L L+ N  
Sbjct: 200 LIAT-----NNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQ- 250
Query: 326 RGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRL------- 378
                  I NL+     T L  L L +N+I+   P   G ++L  L +  N+L       
Sbjct: 251 -------ISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPIS 302
Query: 379 -------------NGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
                        N +    V  L KL+ LF +NN +  V S A L+N+
Sbjct: 303 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 351

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 34/167 (20%)
Query: 236 LNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE-AFGHMPSLNT 294
           L   T+L  +++ GN L  S+   +F+  +NL EL+ L  NQLQ S+P+  F  + +L  
Sbjct: 81  LKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELV-LVENQLQ-SLPDGVFDKLTNLTY 137
Query: 295 LFLASNQFREIPKSL-GNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSN 353
           L LA NQ + +PK +   + NL  L LSYN L        Q+L +G              
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL--------QSLPEGV------------- 176
Query: 354 EITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNN 400
                   F   + LK L +  N+L    +    +L  L+ ++LH+N
Sbjct: 177 --------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 132/289 (45%), Gaps = 52/289 (17%)
Query: 147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
           N + A   PL   NL+ L  L + FN+ I+  +++ L +L++L  L+LS + +S  S   
Sbjct: 94  NNQIADITPL--ANLTNLTGLTL-FNNQIT--DIDPLKNLTNLNRLELSSNTISDIS--- 145
Query: 207 QVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTD-SIYPWLFNVSS 265
             LS L SL+ L   S  +    P ++L     T+LE + I  N ++D S+   L N+ S
Sbjct: 146 -ALSGLTSLQQLSFSSNQVTDLKPLANL-----TTLERLDISSNKVSDISVLAKLTNLES 199
Query: 266 NLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTL 325
            +       +NQ+    P   G + +L+ L L  NQ ++I  +L ++ NL  L L+ N  
Sbjct: 200 LIAT-----NNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQ- 250
Query: 326 RGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRL------- 378
                  I NL+     T L  L L +N+I+   P   G ++L  L +  N+L       
Sbjct: 251 -------ISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPIS 302
Query: 379 -------------NGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
                        N +    V  L KL+ LF  NN +  V S A L+N+
Sbjct: 303 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNI 351

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 35/244 (14%)
Query: 224 DLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIP 283
           ++P +IP +  YLN   +  + VI  +      +  +  +S NLV  I +G         
Sbjct: 28  EVPASIPVNTRYLNLQEN-SIQVIRTDTFKHLRHLEILQLSKNLVRKIEVG--------- 77
Query: 284 EAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTL---------------RG 327
            AF  +PSLNTL L  N+   +P ++   +  L+ L L  N +               R 
Sbjct: 78  -AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRL 136
Query: 328 DLSEI--IQNLSDGCTK--TSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTIN 383
           DL E+  ++ +S+   +   +L +L L    +   +PN      L+ L ++ NRL+    
Sbjct: 137 DLGELKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIPNLTALVRLEELELSGNRLDLIRP 195
Query: 384 KSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPF-QLS 442
            S   L  L  L+L +  +  +   AF  +L +L  L L+ N+L +   HD   P  +L 
Sbjct: 196 GSFQGLTSLRKLWLMHAQVATIERNAF-DDLKSLEELNLSHNNL-MSLPHDLFTPLHRLE 253
Query: 443 QVNL 446
           +V+L
Sbjct: 254 RVHL 257

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 133/291 (45%), Gaps = 57/291 (19%)
Query: 147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
           N + A   PL   NL+ L  L + FN+ I+  +++ L +L++L  L+LS + +S  S   
Sbjct: 99  NNQIADITPL--ANLTNLTGLTL-FNNQIT--DIDPLKNLTNLNRLELSSNTISDIS--- 150
Query: 207 QVLSKLDSLKALYLIS--CDLPPTIPSSDLYLNSSTSLEVIVILGNNLTD-SIYPWLFNV 263
             LS L SL+ L   +   DL P        L + T+LE + I  N ++D S+   L N+
Sbjct: 151 -ALSGLTSLQQLSFGNQVTDLKP--------LANLTTLERLDISSNKVSDISVLAKLTNL 201
Query: 264 SSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYN 323
            S +       +NQ+    P   G + +L+ L L  NQ ++I  +L ++ NL  L L+ N
Sbjct: 202 ESLIAT-----NNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN 253
Query: 324 TLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRL----- 378
                    I NL+     T L  L L +N+I+   P   G ++L  L +  N+L     
Sbjct: 254 Q--------ISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP 304
Query: 379 ---------------NGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
                          N +    V  L KL+ LF +NN +  V S A L+N+
Sbjct: 305 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 355

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 133/291 (45%), Gaps = 57/291 (19%)
Query: 147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
           N + A   PL   NL+ L  L + FN+ I+  +++ L +L++L  L+LS + +S  S   
Sbjct: 94  NNQIADITPL--ANLTNLTGLTL-FNNQIT--DIDPLKNLTNLNRLELSSNTISDIS--- 145
Query: 207 QVLSKLDSLKALYLIS--CDLPPTIPSSDLYLNSSTSLEVIVILGNNLTD-SIYPWLFNV 263
             LS L SL+ L   +   DL P        L + T+LE + I  N ++D S+   L N+
Sbjct: 146 -ALSGLTSLQQLNFGNQVTDLKP--------LANLTTLERLDISSNKVSDISVLAKLTNL 196
Query: 264 SSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYN 323
            S +       +NQ+    P   G + +L+ L L  NQ ++I  +L ++ NL  L L+ N
Sbjct: 197 ESLIAT-----NNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN 248
Query: 324 TLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRL----- 378
                    I NL+     T L  L L +N+I+   P   G ++L  L +  N+L     
Sbjct: 249 Q--------ISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP 299
Query: 379 ---------------NGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
                          N +    V  L KL+ LF +NN +  V S A L+N+
Sbjct: 300 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 350

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 96/238 (40%), Gaps = 43/238 (18%)
Query: 72  GWRG---VNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGS 128
           GW+    VNC  + G    L L  L+       KG  + S + L  L +LDLS N  S  
Sbjct: 305 GWQHLELVNC--KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS-- 360
Query: 129 SIPEFIXXXXXXXXXXXXNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGEN----LEWLS 184
                                F G         + L+ LD+ FN +I+  +    LE L 
Sbjct: 361 ---------------------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399
Query: 185 HLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEV 244
           HL      D   SNL + S +   LS    L+ L  +      T  + +   N  +SLEV
Sbjct: 400 HL------DFQHSNLKQMSEFSVFLS----LRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 245 IVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQF 302
           + + GN+  ++  P +F    NL   ++L   QL+   P AF  + SL  L ++ N F
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 35/244 (14%)
Query: 224 DLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIP 283
           ++P +IP +  YLN   +  + VI  +      +  +  +S NLV  I +G         
Sbjct: 28  EVPASIPVNTRYLNLQEN-SIQVIRTDTFKHLRHLEILQLSKNLVRKIEVG--------- 77
Query: 284 EAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTL---------------RG 327
            AF  +PSLNTL L  N+   +P ++   +  L+ L L  N +               R 
Sbjct: 78  -AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRL 136
Query: 328 DLSEI--IQNLSDGCTK--TSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTIN 383
           DL E+  ++ +S+   +   +L +L L    +   +PN      L+ L ++ NRL+    
Sbjct: 137 DLGELKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIPNLTALVRLEELELSGNRLDLIRP 195
Query: 384 KSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPF-QLS 442
            S   L  L  L+L +  +  +   AF  +L +L  L L+ N+L +   HD   P  +L 
Sbjct: 196 GSFQGLTSLRKLWLMHAQVATIERNAF-DDLKSLEELNLSHNNL-MSLPHDLFTPLHRLE 253
Query: 443 QVNL 446
           +V+L
Sbjct: 254 RVHL 257

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 132/291 (45%), Gaps = 57/291 (19%)
Query: 147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
           N + A   PL   NL+ L  L + FN+ I+  +++ L +L++L  L+LS + +S  S   
Sbjct: 98  NNQIADITPL--ANLTNLTGLTL-FNNQIT--DIDPLKNLTNLNRLELSSNTISDIS--- 149
Query: 207 QVLSKLDSLKALYLIS--CDLPPTIPSSDLYLNSSTSLEVIVILGNNLTD-SIYPWLFNV 263
             LS L SL+ L   +   DL P        L + T+LE + I  N ++D S+   L N+
Sbjct: 150 -ALSGLTSLQQLSFGNQVTDLKP--------LANLTTLERLDISSNKVSDISVLAKLTNL 200
Query: 264 SSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYN 323
            S +       +NQ+    P   G + +L+ L L  NQ ++I  +L ++ NL  L L+ N
Sbjct: 201 ESLIAT-----NNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN 252
Query: 324 TLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRL----- 378
                    I NL+     T L  L L +N+I+   P   G ++L  L +  N+L     
Sbjct: 253 Q--------ISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP 303
Query: 379 ---------------NGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
                          N +    V  L KL+ LF  NN +  V S A L+N+
Sbjct: 304 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNI 354

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 162 SRLQVLDIGFNSLISGEN----LEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKA 217
           + L+ LD+ FN +I+  +    LE L HL      D   SNL + S +   LS    L+ 
Sbjct: 78  TSLKYLDLSFNGVITMSSNFLGLEQLEHL------DFQHSNLKQMSEFSVFLS----LRN 127
Query: 218 LYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQ 277
           L  +      T  + +   N  +SLEV+ + GN+  ++  P +F    NL   ++L   Q
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQ 186
Query: 278 LQGSIPEAFGHMPSLNTLFLASNQF 302
           L+   P AF  + SL  L ++ N F
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNF 211

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 15/143 (10%)
Query: 164 LQVLDIGFNSLISGEN----LEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALY 219
           L+ LD+ FN +I+  +    LE L HL      D   SNL + S +   LS    L+ L 
Sbjct: 399 LKYLDLSFNGVITMSSNFLGLEQLEHL------DFQHSNLKQMSEFSVFLS----LRNLI 448
Query: 220 LISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQ 279
            +      T  + +   N  +SLEV+ + GN+  ++  P +F    NL   ++L   QL+
Sbjct: 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLE 507
Query: 280 GSIPEAFGHMPSLNTLFLASNQF 302
              P AF  + SL  L ++ N F
Sbjct: 508 QLSPTAFNSLSSLQVLNMSHNNF 530

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 132/291 (45%), Gaps = 57/291 (19%)
Query: 147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
           N + A   PL   NL+ L  L + FN+ I+  +++ L +L++L  L+LS + +S  S   
Sbjct: 94  NNQIADITPL--ANLTNLTGLTL-FNNQIT--DIDPLKNLTNLNRLELSSNTISDIS--- 145
Query: 207 QVLSKLDSLKALYLIS--CDLPPTIPSSDLYLNSSTSLEVIVILGNNLTD-SIYPWLFNV 263
             LS L SL+ L   +   DL P        L + T+LE + I  N ++D S+   L N+
Sbjct: 146 -ALSGLTSLQQLNFGNQVTDLKP--------LANLTTLERLDISSNKVSDISVLAKLTNL 196
Query: 264 SSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYN 323
            S +       +NQ+    P   G + +L+ L L  NQ ++I  +L ++ NL  L L+ N
Sbjct: 197 ESLIAT-----NNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN 248
Query: 324 TLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRL----- 378
                    I NL+     T L  L L +N+I+   P   G ++L  L +  N+L     
Sbjct: 249 Q--------ISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP 299
Query: 379 ---------------NGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
                          N +    V  L KL+ LF  NN +  V S A L+N+
Sbjct: 300 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNI 350

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 11/139 (7%)
Query: 265 SNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYN 323
           +NL  LI L  NQLQ      F  + +L  L L  NQ + +P  +   + NL  L L +N
Sbjct: 85  TNLTYLI-LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 324 TLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGT 381
            L+     +   L      T+L  L LD+N++  SLP   F   + LK+LS+ +N+L   
Sbjct: 144 QLQSLPKGVFDKL------TNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLKSV 196
Query: 382 INKSVGQLVKLESLFLHNN 400
            +    +L  L  ++L NN
Sbjct: 197 PDGVFDRLTSLTHIWLLNN 215

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 45/232 (19%)
Query: 248 LGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP- 306
           L NN    I    F    NL  LI L +N++    P AF  +  L  L+L+ NQ +E+P 
Sbjct: 59  LQNNKITEIKDGDFKNLKNLHTLI-LINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 117
Query: 307 --------------------KSLGNMCN-----------LKSLTLSYNTLRG--DLSEI- 332
                               KS+ N  N           LKS  +     +G   LS I 
Sbjct: 118 KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177
Query: 333 -----IQNLSDGCTKTSLAWLFLDSNEITG-SLPNFGGFSSLKRLSIANNRLNGTINKSV 386
                I  +  G    SL  L LD N+IT     +  G ++L +L ++ N ++   N S+
Sbjct: 178 IADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 387 GQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPP 438
                L  L L+NN L  V     L++   + ++YL +N+++   S+D+ PP
Sbjct: 237 ANTPHLRELHLNNNKLVKV--PGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 45/232 (19%)
Query: 248 LGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP- 306
           L NN    I    F    NL  LI L +N++    P AF  +  L  L+L+ NQ +E+P 
Sbjct: 59  LQNNKITEIKDGDFKNLKNLHTLI-LINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 117
Query: 307 --------------------KSLGNMCN-----------LKSLTLSYNTLRG--DLSEI- 332
                               KS+ N  N           LKS  +     +G   LS I 
Sbjct: 118 KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177
Query: 333 -----IQNLSDGCTKTSLAWLFLDSNEITG-SLPNFGGFSSLKRLSIANNRLNGTINKSV 386
                I  +  G    SL  L LD N+IT     +  G ++L +L ++ N ++   N S+
Sbjct: 178 IADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 387 GQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPP 438
                L  L L+NN L  V     L++   + ++YL +N+++   S+D+ PP
Sbjct: 237 ANTPHLRELHLNNNKLVKV--PGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	956
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-73
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-67
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-66
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-66
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-60
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-52
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-20
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-14
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  569 bits (1468), Expect = 0.0
 Identities = 226/873 (25%), Positives = 354/873 (40%), Gaps = 147/873 (16%)

Query: 36  CIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQV 95
            +  E   L++FK  L D   +L  W       + C + GV C +    V  +DL    +
Sbjct: 9   SLYREIHQLISFKDVLPD-KNLLPDWSSNK---NPCTFDGVTCRD--DKVTSIDLSSKPL 62

Query: 96  FPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIP 155
                    +SSSLL L  L  L LS ++ +GS +  F    + L+ L LS    +GP+ 
Sbjct: 63  N---VGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGF-KCSASLTSLDLSRNSLSGPVT 117

Query: 156 --LQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLD 213
               LG+ S L+ L++  N+L     +     L+SL  LDLS +++S             
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG------------ 165

Query: 214 SLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINL 273
                               +  +    L+ + I GN ++  +   +     NL  L ++
Sbjct: 166 --------------ANVVGWVLSDGCGELKHLAISGNKISGDV--DVSR-CVNLEFL-DV 207

Query: 274 GSNQLQGSIPEAFGHMPSLNTLFLASNQFR-EIPKSLGNMCNLKSLTLSYNTLRGDLSEI 332
            SN     IP   G   +L  L ++ N+   +  +++     LK L +S N   G +   
Sbjct: 208 SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP- 265

Query: 333 IQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLV 390
              L       SL +L L  N+ TG +P+   G   +L  L ++ N   G +    G   
Sbjct: 266 -LPLK------SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318

Query: 391 KLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCK 450
            LESL L +N+  G +    L  +  L +L L+ N                         
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF----------------------- 355

Query: 451 IGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSR 510
                                    S  +P    N + +L   +LS+N   G +      
Sbjct: 356 -------------------------SGELPESLTNLSASLLTLDLSSNNFSGPIL----- 385

Query: 511 FHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSI-SFLCSITGHKLDYIDLSNN 569
                       N  + P   L      L L  N F+G I   L + +  +L  + LS N
Sbjct: 386 -----------PNLCQNPKNTL----QELYLQNNGFTGKIPPTLSNCS--ELVSLHLSFN 428

Query: 570 LLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTN 629
            LSG +P        L  L L  N   G+IP  + ++K L++L L  N LTGE+PS  +N
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 630 GSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSS 689
            + L  + L  N L+GEIP WIG  L NL +L L +N F+G+IP +L    ++  LDL++
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547

Query: 690 NNISGIIPKCF---------NNFTAMTHEKGSNLTLISNYYTSLAYDSLK---------- 730
           N  +G IP            N      +    N  +    + +      +          
Sbjct: 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607

Query: 731 TTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNT 790
           +T++  +     + G         G +  LD+S N L G +P+EI  +  L  LNL  N 
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667

Query: 791 LTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQ 850
           ++G I  ++G L+ L+ LDLS N+  G IP ++S L+ L+ +DLS NNLSG IP   Q +
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727

Query: 851 SFSTSMYAGN-ELCGLPLPNKCPDEDSAPGPGK 882
           +F  + +  N  LCG PLP   P         +
Sbjct: 728 TFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQ 760

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  278 bits (712), Expect = 8e-82
 Identities = 153/756 (20%), Positives = 238/756 (31%), Gaps = 145/756 (19%)

Query: 115 LTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSL 174
               D S    +   +P+ +   + ++ L L++ +            S+L  LD+GFN+ 
Sbjct: 6   HEVADCSHLKLT--QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT- 60

Query: 175 ISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDL 234
           IS    E    L  L  L+L                                        
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQ--------------------------------------- 81

Query: 235 YLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNT 294
                          N L+  +    F   +NL EL +L SN +Q      F    +L T
Sbjct: 82  --------------HNELS-QLSDKTFAFCTNLTEL-HLMSNSIQKIKNNPFVKQKNLIT 125

Query: 295 LFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSN 353
           L L+ N        +   + NL+ L LS N     +  +     D    +SL  L L SN
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNN----KIQALKSEELDIFANSSLKKLELSSN 181

Query: 354 EITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVG---QLVKLESLFLHNNSLRGVISEA 409
           +I    P  F     L  L + N +L  ++ + +        + +L L N+ L    +  
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 410 FLS-NLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSL 468
           FL    +NLT+L L+ N+L                       +G     WL     +   
Sbjct: 242 FLGLKWTNLTMLDLSYNNLN---------------------VVGNDSFAWLPQ---LEYF 277

Query: 469 DISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGP 528
            +  + I     +      +N+ + NL  +  K                  IS       
Sbjct: 278 FLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQ----------------SISLASLPKI 320

Query: 529 IPQLPLNAS---FLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSL 585
                        LN+  N   G  S + +   + L Y+ LSN+  S R       F SL
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTSLR-TLTNETFVSL 378

Query: 586 A-----ILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELP-SFFTNGSQLTLMDLG 639
           A     ILNL  N       D+  +L +L+ L L  N +  EL    +     +  + L 
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNG--SIPLQLCHLANVQILDLSSNNISGIIP 697
            N             + +L  L L+        S P     L N+ ILDLS+NNI+ I  
Sbjct: 439 YNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497

Query: 698 KCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLV 757
                   +       L L  N    L                    G    +   L  +
Sbjct: 498 DMLEGLEKLEI-----LDLQHNNLARLWKH--------------ANPGGPIYFLKGLSHL 538

Query: 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG 817
            IL+L SN       E   DL  L  ++L  N L            SL  L+L +N    
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598

Query: 818 SIPSSLS-QLSRLSVMDLSYNNLSGKIPSGTQLQSF 852
                       L+ +D+ +N       S     ++
Sbjct: 599 VEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  271 bits (694), Expect = 3e-79
 Identities = 139/647 (21%), Positives = 236/647 (36%), Gaps = 87/647 (13%)

Query: 239 STSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLA 298
           + S EV       LT  +   L    +N+  L NL  NQL+      F     L +L + 
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDLP---TNITVL-NLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 299 SNQFREI-PKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITG 357
            N   ++ P+    +  LK L L +N L     +           T+L  L L SN I  
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC------TNLTELHLMSNSIQK 111

Query: 358 SLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAF-LSNLS 415
              N F    +L  L +++N L+ T   +  QL  L+ L L NN ++ + SE   +   S
Sbjct: 112 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171

Query: 416 NLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLR---NQNQILSLDISN 472
           +L  L L+ N +       +    +L  + L + ++GP   + L        I +L +SN
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 473 SGISDTVPNWFWN-QTYNLSFFNLSNNQIKG-------KLPNLSSRFHPYRPGIDISSNQ 524
           S +S T    F   +  NL+  +LS N +          LP L            +  N 
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY--------FFLEYNN 283

Query: 525 FEGPIPQLPLNAS---FLNLSKNKFSGSISFLCSITG---------HKLDYIDLSNNLLS 572
            +              +LNL ++    SIS   S+             L+++++ +N + 
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISL-ASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 573 GRLPDCWSQFDSLAILNLANNSFFGKIPDSIGF----LKNLQSLSLYNNRLTGELPSFFT 628
           G   + ++   +L  L+L+N+    +   +  F       L  L+L  N+++      F+
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402

Query: 629 NGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLS 688
               L ++DLG N +  E+      GL N+  + L  NK+          + ++Q L L 
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462

Query: 689 SNNISGI--IPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGS 746
              +  +   P  F     +T      L L +N   ++  D L+  +             
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTI-----LDLSNNNIANINDDMLEGLEK------------ 505

Query: 747 QYEYQSTLGLVKILDLSSNKL--------GGEVPEEIMDLAGLIALNLSRNTLTGQITPK 798
                     ++ILDL  N L         G     +  L+ L  LNL  N         
Sbjct: 506 ----------LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555

Query: 799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845
              L  L  +DL  N       S  +    L  ++L  N ++     
Sbjct: 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  254 bits (650), Expect = 3e-73
 Identities = 129/615 (20%), Positives = 223/615 (36%), Gaps = 74/615 (12%)

Query: 101 LKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGN 160
           L      +     +LT L L  N+               L  L LS+   +         
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 161 LSRLQVLDIGFNSL--ISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKAL 218
           L  LQ L +  N +  +  E L+     SSL  L+LS + + +FS        +  L  L
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIF-ANSSLKKLELSSNQIKEFSP--GCFHAIGRLFGL 200

Query: 219 YLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQL 278
           +L +  L P++        ++TS+  + +  + L+ +       +    + +++L  N L
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 279 QGSIPEAFGHMPSLNTLFLASNQFREI-PKSLGNMCNLKSLTLSYNTLRGDLSEI-IQNL 336
                ++F  +P L   FL  N  + +   SL  + N++ L L  +  +  +S   +  +
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320

Query: 337 SDGCTK--TSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVG----QL 389
            D   +    L  L ++ N+I G   N F G  +LK LS++N+  +     +        
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380

Query: 390 VKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSC 449
             L  L L  N +  + S+AF S L +L +L L  N +  E +                 
Sbjct: 381 SPLHILNLTKNKISKIESDAF-SWLGHLEVLDLGLNEIGQELT----------------- 422

Query: 450 KIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSS 509
                  +  R    I  + +S +       N F     +L    L    +K        
Sbjct: 423 ------GQEWRGLENIFEIYLSYNKYLQLTRNSFALVP-SLQRLMLRRVALKN------- 468

Query: 510 RFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSI-SFLCSITGHKLDYIDLSN 568
                   +D S + F  P+  L    + L+LS N  +      L  +   KL+ +DL +
Sbjct: 469 --------VDSSPSPF-QPLRNL----TILDLSNNNIANINDDMLEGLE--KLEILDLQH 513

Query: 569 NLLS--------GRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT 620
           N L+        G           L ILNL +N F     +    L  L+ + L  N L 
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 621 GELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLA 680
               S F N   L  ++L KN ++       G    NL  L ++ N F+ +         
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI---AW 630

Query: 681 NVQILDLSSNNISGI 695
            V  ++ +  NI  +
Sbjct: 631 FVNWINETHTNIPEL 645

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  156 bits (396), Expect = 1e-39
 Identities = 79/390 (20%), Positives = 130/390 (33%), Gaps = 41/390 (10%)

Query: 100 CLKGTISSSLLILQHLTYLDLSGNNFSGSS--------IPEFIGSLSKLSYLGLSNTEFA 151
            ++   S SL  L ++ YL+L  +    S                L  L +L + + +  
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 152 GPIPLQLGNLSRLQVLDIGFNSL-ISGENLEWLSHL--SSLIYLDLSFSNLSKFSNWMQV 208
           G        L  L+ L +  +   +     E    L  S L  L+L+ + +SK  +    
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES--DA 400

Query: 209 LSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLV 268
            S L  L+ L L   ++   +   +       ++  I  L  N    +    F +  +L 
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQE--WRGLENIFEI-YLSYNKYLQLTRNSFALVPSLQ 457

Query: 269 ELINLGSNQLQG--SIPEAFGHMPSLNTLFLASNQFREIPKS-LGNMCNLKSLTLSYNTL 325
            L  L    L+   S P  F  + +L  L L++N    I    L  +  L+ L L +N L
Sbjct: 458 RL-MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 326 RGDLSEIIQNLSDGCTK--TSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTI 382
                           K  + L  L L+SN         F     LK + +  N LN   
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576

Query: 383 NKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLS 442
                  V L+SL L  N +  V  + F     NLT L +  N                 
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD-------------- 622

Query: 443 QVNLGSCKIGPRFPKWLRNQNQILSLDISN 472
                +C+    F  W+   +  +    S+
Sbjct: 623 ----CTCESIAWFVNWINETHTNIPELSSH 648

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  239 bits (611), Expect = 3e-68
 Identities = 100/663 (15%), Positives = 195/663 (29%), Gaps = 112/663 (16%)

Query: 55  SGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQH 114
           +   ++W    E        GV+ ++  G V  L L            G +  ++  L  
Sbjct: 54  TQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFG------ASGRVPDAIGQLTE 106

Query: 115 LTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSL 174
           L  L L  +    +        +S                   +    R    D+  + +
Sbjct: 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166

Query: 175 ----ISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
                     +          +    +N++  S     + +L  L+  Y+ +        
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA---VMRLTKLRQFYMGNSPFVAENI 223

Query: 231 SSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMP 290
                  +                      ++   +L ++  + +      +P     +P
Sbjct: 224 CEAWENEN---------SEYAQQYKTEDLKWDNLKDLTDV-EVYNCPNLTKLPTFLKALP 273

Query: 291 SLNTLFLASNQFREIPK---------SLGNMCNLKSLTLSYNTLR-GDLSEIIQNLSDGC 340
            +  + +A N+     +                ++ + + YN L+   +   +Q +    
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM---- 329

Query: 341 TKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNN 400
               L  L    N++ G LP FG    L  L++A N++        G   ++E+L   +N
Sbjct: 330 --KKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387

Query: 401 SLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLR 460
            L+ + +     ++S ++ +  + N +        +                        
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGS------VDGKNFDP-----------LDPTPF 430

Query: 461 NQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDI 520
               + S+++SN+ IS      F   +  LS  NL  N +                   I
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGS-PLSSINLMGNMLTE-----------------I 472

Query: 521 SSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPD--C 578
             N  +        N +F N                    L  IDL  N L+  L D   
Sbjct: 473 PKNSLK------DENENFKNTY-----------------LLTSIDLRFNKLTK-LSDDFR 508

Query: 579 WSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYN------NRLTGELPSFFTNGSQ 632
            +    L  ++L+ NS F K P        L+   + N      NR   E P   T    
Sbjct: 509 ATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 633 LTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNI 692
           LT + +G N +   +   I     N+ VL +K N         +C      +  L  +  
Sbjct: 568 LTQLQIGSNDIRK-VNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

Query: 693 SGI 695
             I
Sbjct: 624 QDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  227 bits (580), Expect = 5e-64
 Identities = 95/739 (12%), Positives = 196/739 (26%), Gaps = 184/739 (24%)

Query: 124 NFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWL 183
           +  G+     + S  +++ L L     +G +P  +G L+ L+VL +G +     E L   
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 184 SHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLE 243
             +S+ +                       S +    +      T    D   + S    
Sbjct: 127 KGISANM-----------------------SDEQKQKMRMHYQKTFVDYDPREDFSD--- 160

Query: 244 VIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFR 303
                                   +    + S+  Q SI ++         +   SN   
Sbjct: 161 ------------------------LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 304 EIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-F 362
            + K++  +  L+   +  +    +         +            +  +   +    +
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN-----------SEYAQQYKTEDLKW 245

Query: 363 GGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYL 422
                L  + + N      +   +  L +++ + +  N            +   L    +
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ--LKDDWQALADAPV 303

Query: 423 ADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNW 482
            +    +   +                             N + +  +            
Sbjct: 304 GEKIQIIYIGY-----------------------------NNLKTFPV---------ETS 325

Query: 483 FWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNAS---FL 539
                  L       NQ++GKLP   S        ++++ NQ                 L
Sbjct: 326 LQKMK-KLGMLECLYNQLEGKLPAFGSEIKLAS--LNLAYNQITEIPANFCGFTEQVENL 382

Query: 540 NLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKI 599
           + + NK     +   + +   +  ID S N +                        F  +
Sbjct: 383 SFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-----------------FDPL 425

Query: 600 PDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSG-------EIPTWIG 652
             +     N+ S++L NN+++      F+ GS L+ ++L  N L+        +      
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485

Query: 653 EGLVNLVVLSLKSNKFNGSIP-LQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKG 711
                L  + L+ NK        +   L  +  +DLS N+ S   P    N + +     
Sbjct: 486 -NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSSTLK---- 539

Query: 712 SNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEV 771
                                                      G+    D   N+   E 
Sbjct: 540 -----------------------------------------GFGIRNQRDAQGNRTLREW 558

Query: 772 PEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSV 831
           PE I     L  L +  N +   +  KI    ++  LD+  N       S +       +
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGM 615

Query: 832 MDLSYNNLSGKIPSGTQLQ 850
             L Y+     I     L 
Sbjct: 616 YMLFYDKTQ-DIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  221 bits (565), Expect = 7e-62
 Identities = 93/632 (14%), Positives = 189/632 (29%), Gaps = 125/632 (19%)

Query: 264 SSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFR-----EIPKSLGNMCNLKSL 318
           +  +  L +L      G +P+A G +  L  L L S+  +       PK +    + +  
Sbjct: 80  NGRVTGL-SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 319 TLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRL 378
                  +    +                                 FS L +  I ++  
Sbjct: 139 QKMRMHYQKTFVDYDPRED---------------------------FSDLIKDCINSDPQ 171

Query: 379 NGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPP 438
             +I KS    +K   +   +N++  V     +  L+ L   Y+ ++    E        
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITFVSKA--VMRLTKLRQFYMGNSPFVAE-----NIC 224

Query: 439 FQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNN 498
                 N    +          N   +  +++ N      +P +       +   N++ N
Sbjct: 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP-EMQLINVACN 283

Query: 499 QIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITG 558
           +                               QL  +   L  +               G
Sbjct: 284 RGIS--------------------------GEQLKDDWQALADAPV-------------G 304

Query: 559 HKLDYIDLS-NNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNN 617
            K+  I +  NNL +  +     +   L +L    N   G    + G    L SL+L  N
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYN 363

Query: 618 RLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNG------- 670
           ++T    +F     Q+  +    N L      +  + +  +  +    N+          
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

Query: 671 SIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLK 730
            +        NV  ++LS+N IS    + F+  + ++      + L+ N  T +  +SLK
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS-----INLMGNMLTEIPKNSLK 478

Query: 731 TTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD--LAGLIALNLSR 788
                F                   L+  +DL  NKL   + ++     L  L+ ++LS 
Sbjct: 479 DENENF---------------KNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSY 522

Query: 789 NTLTGQITPKIGQLKSL------DFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK 842
           N+ +     +     +L      +  D   N+     P  ++    L+ + +  N++   
Sbjct: 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK- 580

Query: 843 IPSG--TQLQSFSTSMYAGNELCGLPLPNKCP 872
           +       +          N    + L   CP
Sbjct: 581 VNEKITPNISVLDIK---DNPNISIDLSYVCP 609

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  132 bits (334), Expect = 4e-32
 Identities = 59/326 (18%), Positives = 110/326 (33%), Gaps = 30/326 (9%)

Query: 103 GTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLS 162
             + +SL  ++ L  L+   N   G       GS  KL+ L L+  +         G   
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEG--KLPAFGSEIKLASLNLAYNQITEIPANFCGFTE 377

Query: 163 RLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSK-----FSNWMQVLSKLDSLKA 217
           +++ L    N L    N+     +S +  +D S++ +       F        K  ++ +
Sbjct: 378 QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437

Query: 218 LYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVEL-----IN 272
           + L +  +           ++ + L  I ++GN LT+     L + + N         I+
Sbjct: 438 INLSNNQISKFPKEL---FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

Query: 273 LGSNQLQGSIPE-AFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTL------SYNTL 325
           L  N+L     +     +P L  + L+ N F + P    N   LK   +        N  
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 326 RGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKS 385
             +  E I          SL  L + SN+I           ++  L I +N         
Sbjct: 555 LREWPEGITLC------PSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSY 606

Query: 386 VGQLVKLESLFLHNNSLRGVISEAFL 411
           V   ++     L  +  + +     L
Sbjct: 607 VCPYIEAGMYMLFYDKTQDIRGCDAL 632

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  226 bits (578), Expect = 4e-67
 Identities = 89/338 (26%), Positives = 142/338 (42%), Gaps = 64/338 (18%)

Query: 539 LNLSKNKFSGSISFLCSITGH--KLDYIDLSNNLLSGR--LPDCWSQFDSLAILNLAN-N 593
            +     + G +   C       +++ +DLS   L     +P   +    L  L +   N
Sbjct: 31  TDCCNRTWLGVL---CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87

Query: 594 SFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGE 653
           +  G IP +I  L  L  L + +  ++G +P F +    L  +D   N LSG +P  I  
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147

Query: 654 GLVNLVVLSLKSNKFNGSIPLQLCHLAN-VQILDLSSNNISGIIPKCFNNFTAMTHEKGS 712
            L NLV ++   N+ +G+IP      +     + +S N ++G IP  F           +
Sbjct: 148 -LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-----------A 195

Query: 713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVP 772
           NL L                                           +DLS N L G+  
Sbjct: 196 NLNLA-----------------------------------------FVDLSRNMLEGDAS 214

Query: 773 EEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVM 832
                      ++L++N+L   +  K+G  K+L+ LDL  N+ +G++P  L+QL  L  +
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 833 DLSYNNLSGKIPSGTQLQSFSTSMYAGNE-LCGLPLPN 869
           ++S+NNL G+IP G  LQ F  S YA N+ LCG PLP 
Sbjct: 274 NVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  190 bits (484), Expect = 4e-54
 Identities = 95/398 (23%), Positives = 155/398 (38%), Gaps = 103/398 (25%)

Query: 35  RCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCC--GWRGVNCSNRTGHVYKLDLHI 92
            C  ++++ALL  K+ L + +  LSSW       DCC   W GV C   T          
Sbjct: 2   LCNPQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDTQ--------- 48

Query: 93  LQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGS-SIPEFIGSLSKLSYLGLSNT-EF 150
                                 +  LDLSG N      IP  + +L  L++L +      
Sbjct: 49  -------------------TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 151 AGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLS 210
            GPIP  +  L++L  L I   ++ SG   ++LS + +L+ LD S+              
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNV-SGAIPDFLSQIKTLVTLDFSY-------------- 134

Query: 211 KLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVEL 270
                                                  N L+ ++ P + +   NLV +
Sbjct: 135 ---------------------------------------NALSGTLPPSISS-LPNLVGI 154

Query: 271 INLGSNQLQGSIPEAFGHMPSLNT-LFLASNQFR-EIPKSLGNMCNLKSLTLSYNTLRGD 328
                N++ G+IP+++G    L T + ++ N+   +IP +  N+ NL  + LS N L GD
Sbjct: 155 -TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGD 212

Query: 329 LSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQ 388
            S +  +        +   + L  N +   L   G   +L  L + NNR+ GT+ + + Q
Sbjct: 213 ASVLFGSDK------NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 389 LVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNS 426
           L  L SL +  N+L G I +    NL    +   A+N 
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  158 bits (403), Expect = 3e-43
 Identities = 78/334 (23%), Positives = 120/334 (35%), Gaps = 72/334 (21%)

Query: 356 TGSLPN-FGGFSSLKRLSIANNRLNGT--INKSVGQLVKLESLFLHN-NSLRGVISEAFL 411
            G L +       +  L ++   L     I  S+  L  L  L++   N+L G I  A +
Sbjct: 39  LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-I 97

Query: 412 SNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDIS 471
           + L+ L  LY+   +++       IP F      L   K                     
Sbjct: 98  AKLTQLHYLYITHTNVSGA-----IPDF------LSQIK--------------------- 125

Query: 472 NSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLP----NLSSRFHPYRPGIDISSNQFEG 527
                             L   + S N + G LP    +L +        I    N+  G
Sbjct: 126 -----------------TLVTLDFSYNALSGTLPPSISSLPNLVG-----ITFDGNRISG 163

Query: 528 PIP----QLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFD 583
            IP          + + +S+N+ +G I    +     L ++DLS N+L G     +    
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPP--TFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 584 SLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGL 643
           +   ++LA NS    +   +G  KNL  L L NNR+ G LP   T    L  +++  N L
Sbjct: 222 NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 644 SGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLC 677
            GEIP   G  L    V +  +NK     PL  C
Sbjct: 281 CGEIPQ--GGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (388), Expect = 3e-41
 Identities = 66/268 (24%), Positives = 108/268 (40%), Gaps = 33/268 (12%)

Query: 456 PKWLRNQNQILSLDISNSGIS--DTVPNWFWNQTYNLSFFNLSN-NQIKG-------KLP 505
                   ++ +LD+S   +     +P+   N    L+F  +   N + G       KL 
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 506 NLSSRFHPYRPGIDISSNQFEGPIP----QLPLNASFLNLSKNKFSGSI-SFLCSITGHK 560
            L          + I+     G IP    Q+      L+ S N  SG++   + S+    
Sbjct: 102 QLHY--------LYITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLP--N 150

Query: 561 LDYIDLSNNLLSGRLPDCWSQFDSLA-ILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRL 619
           L  I    N +SG +PD +  F  L   + ++ N   GKIP +   L NL  + L  N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209

Query: 620 TGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHL 679
            G+    F +      + L KN L+ ++         NL  L L++N+  G++P  L  L
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 680 ANVQILDLSSNNISGIIPK--CFNNFTA 705
             +  L++S NN+ G IP+      F  
Sbjct: 268 KFLHSLNVSFNNLCGEIPQGGNLQRFDV 295

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  152 bits (387), Expect = 4e-41
 Identities = 74/271 (27%), Positives = 108/271 (39%), Gaps = 29/271 (10%)

Query: 455 FPKWLRNQNQILS----LDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLP----- 505
             K L N   + S     D  N      + +    QTY ++  +LS   +    P     
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 506 -NLSSRFHPYRPGIDISS-NQFEGPIP----QLPLNASFLNLSKNKFSGSI-SFLCSITG 558
            NL          + I   N   GPIP    +L     +L ++    SG+I  FL  I  
Sbjct: 73  ANLPYLNF-----LYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIK- 125

Query: 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNL-QSLSLYNN 617
             L  +D S N LSG LP   S   +L  +    N   G IPDS G    L  S+++  N
Sbjct: 126 -TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

Query: 618 RLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLC 677
           RLTG++P  F N + L  +DL +N L G+     G    N   + L  N     +  ++ 
Sbjct: 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDLG-KVG 241

Query: 678 HLANVQILDLSSNNISGIIPKCFNNFTAMTH 708
              N+  LDL +N I G +P+       +  
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  139 bits (353), Expect = 2e-36
 Identities = 73/353 (20%), Positives = 129/353 (36%), Gaps = 86/353 (24%)

Query: 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFR---EIPKSLGNMCNLKSLTLS-YNTLR 326
            +  +    G + +       +N L L+         IP SL N+  L  L +   N L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 327 GDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNF-GGFSSLKRLSIANNRLNGTINKS 385
           G +   I  L+       L +L++    ++G++P+F     +L  L  + N L+GT+  S
Sbjct: 91  GPIPPAIAKLT------QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

Query: 386 VGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVN 445
           +  L  L  +    N + G I +++ S     T + ++ N LT +     IPP       
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-----IPPT------ 193

Query: 446 LGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLP 505
             +                                         L+F +LS N ++G   
Sbjct: 194 FANLN---------------------------------------LAFVDLSRNMLEGDAS 214

Query: 506 NLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYID 565
            L              S++          N   ++L+KN  +  +  +       L+ +D
Sbjct: 215 VL------------FGSDK----------NTQKIHLAKNSLAFDLGKVGLSKN--LNGLD 250

Query: 566 LSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR 618
           L NN + G LP   +Q   L  LN++ N+  G+IP   G L+     +  NN+
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  234 bits (598), Expect = 1e-66
 Identities = 113/645 (17%), Positives = 212/645 (32%), Gaps = 95/645 (14%)

Query: 237 NSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLF 296
           N   S + + +  N L   +  + F     L  L +L   ++Q     A+  +  L+TL 
Sbjct: 25  NLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVL-DLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 297 LASNQFREI-PKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEI 355
           L  N  + +   +   + +L+ L      L    +  I +L       +L  L +  N I
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL------KTLKELNVAHNLI 136

Query: 356 TGSLP--NFGGFSSLKRLSIANNRLNGTINKSVGQLVKLE----SLFLHNNSLRGVISEA 409
                   F   ++L+ L +++N++       +  L ++     SL L  N +  +   A
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 410 FLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQV-------NLGSCKIGPRFPKWLRN- 461
           F      L  L L +N  +L      I      +V             +       L   
Sbjct: 197 F--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 462 -QNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDI 520
               I    ++            +N   N+S F+L +  I+  + + S  ++     +++
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFS--YNFGWQHLEL 311

Query: 521 SSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLS--GRLPDC 578
            + +F         +   L  + NK   + S +       L+++DLS N LS  G     
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL---PSLEFLDLSRNGLSFKGCCSQS 368

Query: 579 WSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELP-SFFTNGSQLTLMD 637
                SL  L+L+ N     +  +   L+ L+ L   ++ L      S F +   L  +D
Sbjct: 369 DFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 638 LGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQ-LCHLANVQILDLSSNNISGII 696
           +               GL +L VL +  N F  +        L N+  LDLS   +  + 
Sbjct: 428 ISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 697 PKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGL 756
           P  FN+ +++                                                  
Sbjct: 487 PTAFNSLSSLQV------------------------------------------------ 498

Query: 757 VKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQL-KSLDFLDLSRNQF 815
              L++S N            L  L  L+ S N +      ++     SL FL+L++N F
Sbjct: 499 ---LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

Query: 816 FGSIPSS--LSQLSRLSVMDLSYNNLSGKIPS---GTQLQSFSTS 855
             +      L  +     + +    +    PS   G  + S + +
Sbjct: 556 ACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  232 bits (594), Expect = 3e-66
 Identities = 110/612 (17%), Positives = 193/612 (31%), Gaps = 76/612 (12%)

Query: 111 ILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIG 170
           +      LDLS N            S  +L  L LS  E          +LS L  L + 
Sbjct: 26  LPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
            N +     L   S LSSL  L    +NL+   N    +  L +LK L +          
Sbjct: 85  GNPI-QSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVA--------- 132

Query: 231 SSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMP 290
                              N +     P  F+  +NL  L +L SN++Q         + 
Sbjct: 133 ------------------HNLIQSFKLPEYFSNLTNLEHL-DLSSNKIQSIYCTDLRVLH 173

Query: 291 SL----NTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLA 346
            +     +L L+ N    I         L  LTL  N    +   +++    G     + 
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN---VMKTCIQGLAGLEVH 230

Query: 347 WLFLDSNEITGSL--PNFGGFSSLKRLSIANNRLN------GTINKSVGQLVKLESLFLH 398
            L L      G+L   +      L  L+I   RL         I      L  + S  L 
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 399 NNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKW 458
           + ++  V      S       L L +           +    L ++   S K G  F + 
Sbjct: 291 SVTIERVKD---FSYNFGWQHLELVNCKFG---QFPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 459 LRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKG------KLPNLSSRFH 512
                + L L  +            +  T +L + +LS N +         L  L     
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLEQLEH--- 400

Query: 513 PYRPGIDISSNQFEGPIPQLPL----NASFLNLSKNKFSGSISFLCSITGHKLDYIDLSN 568
                +D   +  +            N  +L++S      + + + +     L+ + ++ 
Sbjct: 401 -----LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAG 454

Query: 569 NLLSGRL-PDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFF 627
           N       PD +++  +L  L+L+        P +   L +LQ L++ +N         +
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 628 TNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQ--LCHLANVQIL 685
              + L ++D   N +       +     +L  L+L  N F  +   Q  L  + + + L
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 574

Query: 686 DLSSNNISGIIP 697
            +    +    P
Sbjct: 575 LVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  179 bits (455), Expect = 1e-47
 Identities = 95/602 (15%), Positives = 190/602 (31%), Gaps = 105/602 (17%)

Query: 101 LKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAG-PIPLQLG 159
           ++     +   L  L  L     N +       IG L  L  L +++       +P    
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 160 NLSRLQVLDIGFNSL--ISGENLEWLSHLS-SLIYLDLSFSNLSKFSNWMQVLSKLDSLK 216
           NL+ L+ LD+  N +  I   +L  L  +    + LDLS + ++          K   L 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---AFKEIRLH 203

Query: 217 ALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSN 276
            L L +      +  + +   +   +  +V+       ++  +  +    L  L  +   
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL-TIEEF 262

Query: 277 QLQ------GSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLS 330
           +L         I + F  + ++++  L S     +          + L L         +
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPT 321

Query: 331 EIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLN--GTINKSVGQ 388
             +++L           L   SN+   +        SL+ L ++ N L+  G  ++S   
Sbjct: 322 LKLKSLK---------RLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 389 LVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGS 448
              L+ L L  N +  + S      L  L  L    ++L        +  F +       
Sbjct: 372 TTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLK------QMSEFSV------- 416

Query: 449 CKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLS 508
                       +   ++ LDIS++         F                    L +L 
Sbjct: 417 ----------FLSLRNLIYLDISHTHTRVAFNGIFNG------------------LSSLE 448

Query: 509 SRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSN 568
                    + ++ N F+           F  L                   L ++DLS 
Sbjct: 449 V--------LKMAGNSFQENFL----PDIFTELR-----------------NLTFLDLSQ 479

Query: 569 NLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFT 628
             L    P  ++   SL +LN+++N+FF         L +LQ L    N +         
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 629 N-GSQLTLMDLGKNGLSGEIP-TWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILD 686
           +  S L  ++L +N  +         + + +   L ++  +   + P        + +L 
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS---DKQGMPVLS 596

Query: 687 LS 688
           L+
Sbjct: 597 LN 598

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  123 bits (311), Expect = 3e-29
 Identities = 72/357 (20%), Positives = 101/357 (28%), Gaps = 44/357 (12%)

Query: 519 DISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITG-HKLDYIDLSNNLLSGRLPD 577
                 F      LP +   L+LS N      S+  S     +L  +DLS   +      
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDG 70

Query: 578 CWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMD 637
            +     L+ L L  N        +   L +LQ L      L         +   L  ++
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 638 LGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQI----LDLSSNNIS 693
           +  N +           L NL  L L SNK        L  L  + +    LDLS N ++
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 694 GIIPKCF-----------NNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLT 742
            I P  F           NNF ++   K     L       L     +   +        
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 743 WKGSQYEYQSTLGL-------------------VKILDLSSNKLGGEVPEEIMDLAGLIA 783
            +G          L                   V    L S  +     ++     G   
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQH 308

Query: 784 LNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLS 840
           L L         T K+  LK L F         G    S   L  L  +DLS N LS
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNK-----GGNAFSEVDLPSLEFLDLSRNGLS 360

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  116 bits (292), Expect = 5e-27
 Identities = 67/303 (22%), Positives = 111/303 (36%), Gaps = 38/303 (12%)

Query: 79  SNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSS-IPEFIGSL 137
           + + G    L L  L+       KG  + S + L  L +LDLS N  S      +     
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 138 SKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFS 197
           + L YL LS       +      L +L+ LD   ++L           L +LIYLD+S +
Sbjct: 373 TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 198 NLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIY 257
           +     N   + + L SL+ L +                            GN+  ++  
Sbjct: 432 HTRVAFN--GIFNGLSSLEVLKMA---------------------------GNSFQENFL 462

Query: 258 PWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE-IPKSLGNMCNLK 316
           P +F    NL  L +L   QL+   P AF  + SL  L ++ N F          + +L+
Sbjct: 463 PDIFTELRNLTFL-DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521

Query: 317 SLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANN 376
            L  S N +     + +Q+       +SLA+L L  N+   +  +      +K       
Sbjct: 522 VLDYSLNHIMTSKKQELQHFP-----SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 576

Query: 377 RLN 379
            + 
Sbjct: 577 EVE 579

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  102 bits (256), Expect = 1e-22
 Identities = 53/221 (23%), Positives = 84/221 (38%), Gaps = 10/221 (4%)

Query: 104 TISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSR 163
           T+SS+ L L+ L +LD   +N    S      SL  L YL +S+T            LS 
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 164 LQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISC 223
           L+VL +  NS       +  + L +L +LDLS   L + S      + L SL+ L +   
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNMSHN 504

Query: 224 DLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIP 283
           +                SL+V+    N++  S    L +  S+L  L NL  N    +  
Sbjct: 505 NFFSLDTFP---YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL-NLTQNDFACTCE 560

Query: 284 EA--FGHMPSLNTLFLASNQFR-EIPKSLGNMCNLKSLTLS 321
                  +     L +   +     P     M  + SL ++
Sbjct: 561 HQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSLNIT 600

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  222 bits (567), Expect = 2e-62
 Identities = 111/599 (18%), Positives = 187/599 (31%), Gaps = 86/599 (14%)

Query: 262 NVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREI-PKSLGNMCNLKSLTL 320
            + ++   L     N L       F  + +L  L L   Q   I   +  +   L +L L
Sbjct: 30  TLPNSTECL-EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88

Query: 321 SYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLN 379
           + N L       +          +L  LF     I+           +L+ L + +N ++
Sbjct: 89  TANPLIFMAETALSGP------KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142

Query: 380 GTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLE-FSHDWIPP 438
                      KL+ L   NN++  +  E   S+L   T L L  N   +          
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGNDIAGIEPGAFDS 201

Query: 439 FQLSQVNLGSCKIGPRFPKWLRNQN--QILSLDISNSGISDTVPNWFWNQT-YNLSFFNL 495
                +N G  +      K L+N     +      +    D  P  F      ++   NL
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261

Query: 496 SNNQIKG-------KLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNAS---FLNLSKNK 545
             +               L          +D+++      +P   +  S    L LS NK
Sbjct: 262 QKHYFFNISSNTFHCFSGLQE--------LDLTATHLSE-LPSGLVGLSTLKKLVLSANK 312

Query: 546 FSGSISFLCSITGHKLDYIDLSNNLLSGRL-PDCWSQFDSLAILNLANN--SFFGKIPDS 602
           F        S     L ++ +  N     L   C    ++L  L+L+++           
Sbjct: 313 FENLCQISASNF-PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

Query: 603 IGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLS 662
           +  L +LQSL+L  N         F    QL L+DL    L  +      + L  L VL+
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431

Query: 663 LKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYT 722
           L  +  + S       L  +Q L+L  N+      +  N+   +                
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR-------------- 477

Query: 723 SLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLI 782
                                             ++IL LS   L          L  + 
Sbjct: 478 ----------------------------------LEILVLSFCDLSSIDQHAFTSLKMMN 503

Query: 783 ALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSG 841
            ++LS N LT      +  LK + +L+L+ N     +PS L  LS+   ++L  N L  
Sbjct: 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  216 bits (553), Expect = 2e-60
 Identities = 106/576 (18%), Positives = 190/576 (32%), Gaps = 51/576 (8%)

Query: 111 ILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIG 170
           +      L+ S N    +        L  L++L L+  +          +  RL  L + 
Sbjct: 31  LPNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
            N L        LS   +L +L    + +S        L    +L++LYL S  +     
Sbjct: 90  ANPL-IFMAETALSGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKL 146

Query: 231 SSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVEL-INLGSNQLQGSIPEAFGHM 289
                   +  L+V+    N +   +     +       L +NL  N +   I       
Sbjct: 147 PK---GFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDS 201

Query: 290 PSLNTLFLASNQFR-EIPKSLGN--MCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLA 346
               +L     Q    I K L N  + +L   T        D  +I   + +G  + S+ 
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM----DDEDISPAVFEGLCEMSVE 257

Query: 347 WLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGV 405
            + L  +       N F  FS L+ L +    L+  +   +  L  L+ L L  N    +
Sbjct: 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL 316

Query: 406 ISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPF-QLSQVNLGSCKIG--PRFPKWLRNQ 462
              +  SN  +LT L +  N+  LE     +     L +++L    I         LRN 
Sbjct: 317 CQISA-SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 463 NQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISS 522
           + + SL++S +         F      L   +L+  ++K                    +
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECP-QLELLDLAFTRLKV-----------------KDA 417

Query: 523 NQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQF 582
                 +  L      LNLS +    S   L       L +++L  N          +  
Sbjct: 418 QSPFQNLHLL----KVLNLSHSLLDISSEQLFDGL-PALQHLNLQGNHFPKGNIQKTNSL 472

Query: 583 ---DSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG 639
                L IL L+          +   LK +  + L +NRLT       ++   + L +L 
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NLA 531

Query: 640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQ 675
            N +S  +P+ +   L     ++L+ N  + +    
Sbjct: 532 SNHISIILPSLLP-ILSQQRTINLRQNPLDCTCSNI 566

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  201 bits (513), Expect = 3e-55
 Identities = 107/583 (18%), Positives = 178/583 (30%), Gaps = 89/583 (15%)

Query: 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRGDL 329
            N  +  L   IP       S   L  + N    I   +   + NL  L L+   +    
Sbjct: 17  YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 330 SEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQ 388
            +  Q+         L  L L +N +         G  +LK L      ++      +  
Sbjct: 74  EDTFQSQ------HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127

Query: 389 LVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGS 448
              LESL+L +N +  +           L +L   +N++    S + +   Q        
Sbjct: 128 QKTLESLYLGSNHISSIKLPKG-FPTEKLKVLDFQNNAIH-YLSKEDMSSLQ-------- 177

Query: 449 CKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGK-LPNL 507
                        Q   LSL+++ + I+   P  F   +      N    Q        L
Sbjct: 178 -------------QATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGL 222

Query: 508 SSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLS 567
            +                E   P +      +++                      I+L 
Sbjct: 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE--------------------SINLQ 262

Query: 568 NNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFF 627
            +       + +  F  L  L+L       ++P  +  L  L+ L L  N+         
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISA 321

Query: 628 TNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGS--IPLQLCHLANVQIL 685
           +N   LT + +  N    E+ T   E L NL  L L  +    S    LQL +L+++Q L
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381

Query: 686 DLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKG 745
           +LS N    +  + F     +       L L           S                 
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLEL-----LDLAFTRLKVKDAQSP---------------- 420

Query: 746 SQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIG---QL 802
                   L L+K+L+LS + L     +    L  L  LNL  N        K      L
Sbjct: 421 -----FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475

Query: 803 KSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845
             L+ L LS          + + L  ++ +DLS+N L+     
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  150 bits (382), Expect = 3e-38
 Identities = 71/374 (18%), Positives = 126/374 (33%), Gaps = 38/374 (10%)

Query: 101 LKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGN 160
                S++      L  LDL+  + S   +P  +  LS L  L LS  +F     +   N
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 161 LSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYL 220
              L  L I  N+         L +L +L  LDLS  ++         L  L  L++L L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 221 ISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQG 280
              +   ++ +          LE++ +    L        F     L  L NL  + L  
Sbjct: 384 SYNEP-LSLKTEA--FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL-NLSHSLLDI 439

Query: 281 SIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGC 340
           S  + F  +P+L  L L  N F +                         +  +Q L    
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGN--------------------IQKTNSLQTL---- 475

Query: 341 TKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHN 399
               L  L L   +++    + F     +  + +++NRL  +  +++  L  +  L L +
Sbjct: 476 --GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLAS 532

Query: 400 NSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRF--PK 457
           N +  ++       LS    + L  N L    S+ +   +    +             P 
Sbjct: 533 NHISIILPSLL-PILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPP 591

Query: 458 WLRNQNQILSLDIS 471
            LR    +  + +S
Sbjct: 592 LLRGVR-LSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  149 bits (379), Expect = 8e-38
 Identities = 76/376 (20%), Positives = 122/376 (32%), Gaps = 30/376 (7%)

Query: 106 SSSLLILQHLTYLDLSGNNFSGSSIPEFIG-SLSKLSYLGLSNTEFAGPIPLQLGNLSRL 164
                 +Q L        +    S   F G     +  + L    F           S L
Sbjct: 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280

Query: 165 QVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCD 224
           Q LD+    L    +   L  LS+L  L LS +            S   SL  L +    
Sbjct: 281 QELDLTATHLSELPS--GLVGLSTLKKLVLSANKFENLCQ--ISASNFPSLTHLSIKGNT 336

Query: 225 LPPTIPSSDLYLNSSTSLEVIVILGNNLTDS-IYPWLFNVSSNLVELINLGSNQLQGSIP 283
               + +    L +  +L  + +  +++  S          S+L  L NL  N+      
Sbjct: 337 KRLELGTGC--LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL-NLSYNEPLSLKT 393

Query: 284 EAFGHMPSLNTLFLASNQFREIPK--SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCT 341
           EAF   P L  L LA  + +         N+  LK L LS++ L     ++   L     
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP---- 449

Query: 342 KTSLAWLFLDSNEITG----SLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFL 397
             +L  L L  N           +      L+ L ++   L+     +   L  +  + L
Sbjct: 450 --ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 398 HNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLG------SCKI 451
            +N L     EA  S+L  +  L LA N +++          Q   +NL       +C  
Sbjct: 508 SHNRLTSSSIEAL-SHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565

Query: 452 GPRFPKWLRNQNQILS 467
              F +W +   Q L 
Sbjct: 566 IY-FLEWYKENMQKLE 580

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  146 bits (370), Expect = 1e-36
 Identities = 75/491 (15%), Positives = 144/491 (29%), Gaps = 110/491 (22%)

Query: 365 FSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLAD 424
            +S + L  + N L    N +  +L+ L  L L    +  +  + F  +   L  L L  
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF-QSQHRLDTLVLTA 90

Query: 425 NSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFW 484
           N L       ++                      L     +  L    +GIS        
Sbjct: 91  NPLI------FMAE------------------TALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 485 NQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKN 544
           NQ   L    L +N I                   I   +      +L      L+   N
Sbjct: 127 NQK-TLESLYLGSNHISS-----------------IKLPKGFP-TEKL----KVLDFQNN 163

Query: 545 KFSGSISF-LCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSI 603
                    + S+       ++L+ N ++G +            LN         I   +
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

Query: 604 GF--LKNLQSLSLYNNRLTGELPSFFTNGSQLTL--MDLGKNGLSGEIPTWIGEGLVNLV 659
               +++L   +  +       P+ F    ++++  ++L K+                L 
Sbjct: 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH-CFSGLQ 281

Query: 660 VLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISN 719
            L L +   +  +P  L  L+ ++ L LS+N    +     +NF ++TH           
Sbjct: 282 ELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH----------- 329

Query: 720 YYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIM-DL 778
                                                   L +  N    E+    + +L
Sbjct: 330 ----------------------------------------LSIKGNTKRLELGTGCLENL 349

Query: 779 AGLIALNLSRNTLT--GQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSY 836
             L  L+LS + +        ++  L  L  L+LS N+       +  +  +L ++DL++
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409

Query: 837 NNLSGKIPSGT 847
             L  K     
Sbjct: 410 TRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  138 bits (349), Expect = 5e-34
 Identities = 60/337 (17%), Positives = 111/337 (32%), Gaps = 15/337 (4%)

Query: 518 IDISSNQFEGPIPQLPLNASFLNLSKNKFS----GSISFLCSITGHKLDYIDLSNNLLSG 573
            +  +         LP +   L  S N        + S L       L ++DL+   +  
Sbjct: 17  YNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRL-----INLTFLDLTRCQIYW 71

Query: 574 RLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQL 633
              D +     L  L L  N        ++   K L+ L      ++        N   L
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 634 TLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQI--LDLSSNN 691
             + LG N +S  I    G     L VL  ++N  +      +  L       L+L+ N+
Sbjct: 132 ESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 692 ISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKT-TKSYFDKAVLTWKGSQYEY 750
           I+GI P  F+               +   +  L   ++++     F+             
Sbjct: 191 IAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 751 QSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDL 810
                 V+ ++L  +             +GL  L+L+   L+ ++   +  L +L  L L
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308

Query: 811 SRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGT 847
           S N+F      S S    L+ + +  N    ++ +G 
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.1 bits (206), Expect = 2e-16
 Identities = 41/235 (17%), Positives = 74/235 (31%), Gaps = 33/235 (14%)

Query: 637 DLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGII 696
           +    GL+ EIP  +     +   L    N            L N+  LDL+   I  I 
Sbjct: 18  NCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 697 PKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGL 756
              F +   +       L L +N    +A  +L   K+                      
Sbjct: 74  EDTFQSQHRLDT-----LVLTANPLIFMAETALSGPKA---------------------- 106

Query: 757 VKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFF 816
           +K L      +       + +   L +L L  N ++    PK    + L  LD   N   
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 817 GSIPSSLSQLSRLSVM--DLSYNNLSGKIPSGTQLQSFSTSMYAGNELCGLPLPN 869
                 +S L + + +  +L+ N+++G  P       F +  + G +   +    
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG 221

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  225 bits (575), Expect = 7e-62
 Identities = 97/670 (14%), Positives = 205/670 (30%), Gaps = 112/670 (16%)

Query: 47  FKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTIS 106
           +  G ++ +    +W    E        GV+  N  G V  L L           KG + 
Sbjct: 288 YYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFG------AKGRVP 340

Query: 107 SSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQV 166
            ++  L  L  L    ++ + S        L+        +        + L    RL +
Sbjct: 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400

Query: 167 LDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLS-KFSNWMQVLSKLDSLKALYLISCDL 225
            D+  +++     ++ +   S +   D    NL+ + +   + + +L  L+ +Y  +   
Sbjct: 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460

Query: 226 PPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEA 285
                + D    +                      ++   +L ++  L +      +P+ 
Sbjct: 461 TYDNIAVDWEDAN---------SDYAKQYENEELSWSNLKDLTDV-ELYNCPNMTQLPDF 510

Query: 286 FGHMPSLNTLFLASNQFR----------EIPKSLGNMCNLKSLTLSYNTLRG-DLSEIIQ 334
              +P L +L +A N+             +         ++   + YN L     S  +Q
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 335 NLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQ-LVKLE 393
            +        L  L    N++   L  FG    L  L +  N++   I +       ++E
Sbjct: 571 KM------VKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE 622

Query: 394 SLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGP 453
            L   +N L+ + +     ++  +  +  + N +  E  +          +N        
Sbjct: 623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA------- 675

Query: 454 RFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHP 513
                        ++ +S + I       F   +  +S   LSNN +             
Sbjct: 676 ------------STVTLSYNEIQKFPTELFATGS-PISTIILSNNLMT------------ 710

Query: 514 YRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSG 573
                 I  N  +      P + ++ N                    L  IDL  N L+ 
Sbjct: 711 -----SIPENSLK------PKDGNYKNTY-----------------LLTTIDLRFNKLTS 742

Query: 574 RLPD--CWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSL------YNNRLTGELPS 625
            L D    +    L+ ++++ N  F   P        L++  +        NR+  + P+
Sbjct: 743 -LSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800

Query: 626 FFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQIL 685
             T    L  + +G N +  ++   +      L +L +  N         +C      + 
Sbjct: 801 GITTCPSLIQLQIGSNDIR-KVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMY 856

Query: 686 DLSSNNISGI 695
            L  +    I
Sbjct: 857 VLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  203 bits (517), Expect = 2e-54
 Identities = 88/630 (13%), Positives = 183/630 (29%), Gaps = 117/630 (18%)

Query: 261 FNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTL 320
            + +  +  L +L     +G +P+A G +  L  L   ++      +  G+      ++ 
Sbjct: 319 LDNNGRVTGL-SLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 321 SYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNG 380
                                      + +   ++          S L + +I  N    
Sbjct: 378 ERKHR----------------------IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415

Query: 381 TINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQ 440
            I K     +K   +    N +  +     +  L+ L I+Y A++  T +          
Sbjct: 416 PIKKDSRISLKDTQIGNLTNRITFISKA--IQRLTKLQIIYFANSPFTYD-----NIAVD 468

Query: 441 LSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQI 500
               N    K          N   +  +++ N      +P++ ++    L   N++ N+ 
Sbjct: 469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRG 527

Query: 501 KGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHK 560
                  +                         L        K                 
Sbjct: 528 ISAAQLKADWTR---------------------LADDEDTGPK----------------- 549

Query: 561 LDYIDLSNNLLSGRLPDCW--SQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR 618
           +    +  N L    P      +   L +L+  +N    +  ++ G    L  L L  N+
Sbjct: 550 IQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQ 606

Query: 619 LTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIG-EGLVNLVVLSLKSNKF-----NGSI 672
           +      F     Q+  +    N L   IP     + +  +  +    NK      N S 
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 673 PLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTT 732
            +      N   + LS N I     + F   + ++      + L +N  TS+  +SLK  
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST-----IILSNNLMTSIPENSLKPK 720

Query: 733 KSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIM--DLAGLIALNLSRNT 790
              +                   L+  +DL  NKL   + ++     L  L  +++S N 
Sbjct: 721 DGNY---------------KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC 764

Query: 791 LTGQITPKIGQLKSLDFLDLSR------NQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIP 844
            +     +      L    +        N+     P+ ++    L  + +  N++  K+ 
Sbjct: 765 FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVD 822

Query: 845 SG--TQLQSFSTSMYAGNELCGLPLPNKCP 872
                QL     +    N    + + + CP
Sbjct: 823 EKLTPQLYILDIA---DNPNISIDVTSVCP 849

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  198 bits (504), Expect = 1e-52
 Identities = 96/720 (13%), Positives = 194/720 (26%), Gaps = 193/720 (26%)

Query: 124 NFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWL 183
           +  G      + +  +++ L L+     G +P  +G L+ L+VL  G +S      L   
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 184 SHLS-SLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSL 242
             L+  +         +     ++    +L+    L       P   P       S    
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 243 EVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQF 302
           +                           I   +N++   I +A   +  L  ++ A++ F
Sbjct: 429 Q---------------------------IGNLTNRIT-FISKAIQRLTKLQIIYFANSPF 460

Query: 303 REIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN- 361
                ++    + +     Y     +      NL        L  + L +      LP+ 
Sbjct: 461 TYDNIAV----DWEDANSDYAKQYENEELSWSNL------KDLTDVELYNCPNMTQLPDF 510

Query: 362 FGGFSSLKRLSIANNRLNG---------TINKSVGQLVKLESLFLHNNSLRGVISEAFLS 412
                 L+ L+IA NR             +        K++  ++  N+L    + A L 
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 413 NLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISN 472
            +  L +L    N +        +  F                        ++  L +  
Sbjct: 571 KMVKLGLLDCVHNKVRH------LEAFG--------------------TNVKLTDLKLDY 604

Query: 473 SGISDTVPNWFWNQTYNLSFFNLSNNQIK--------GKLPNLSSRFHPYRPGIDISSNQ 524
           + I   +P  F   T  +     S+N++K          +  + S        +D S N+
Sbjct: 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS--------VDFSYNK 655

Query: 525 FEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDS 584
                  +  +                            + LS N +     + ++    
Sbjct: 656 IGSEGRNISCSMDDYKGIN-----------------ASTVTLSYNEIQKFPTELFATGSP 698

Query: 585 LAILNLANNSF-------FGKIPDSIGFLKNLQSLSLYNNRLTGELPSF-FTNGSQLTLM 636
           ++ + L+NN               +      L ++ L  N+LT     F  T    L+ M
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM 758

Query: 637 DLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGII 696
           D+  N  S   PT        L    ++                     D   N I    
Sbjct: 759 DVSYNCFS-SFPTQPLN-SSQLKAFGIRHQ------------------RDAEGNRILRQW 798

Query: 697 PKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGL 756
           P       ++                                                  
Sbjct: 799 PTGITTCPSLIQ------------------------------------------------ 810

Query: 757 VKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLT-GQITPKIGQLKS-LDFLDLSRNQ 814
              L + SN +  +V E++     L  L+++ N      +T     +++ +  L   + Q
Sbjct: 811 ---LQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  155 bits (392), Expect = 8e-39
 Identities = 68/509 (13%), Positives = 134/509 (26%), Gaps = 101/509 (19%)

Query: 351 DSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAF 410
            +        N    S     +   +         +    ++  L L     +G + +A 
Sbjct: 284 KNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAI 343

Query: 411 LSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDI 470
              L+ L +L    +S T       +         L         P     +   + +  
Sbjct: 344 -GQLTELKVLSFGTHSET-------VSGRLFGDEELT--------PDMSEERKHRIRMHY 387

Query: 471 SNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGP-- 528
               +         +   +       N ++K    +  SR       I   +N+      
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAI---NRNPEMKPIKKD--SRISLKDTQIGNLTNRITFISK 442

Query: 529 -IPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAI 587
            I +L      +  + + F+     +           +             WS    L  
Sbjct: 443 AIQRLT-KLQIIYFANSPFTYDNIAVDWED------ANSDYAKQYENEELSWSNLKDLTD 495

Query: 588 LNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTG---------ELPSFFTNGSQLTLMDL 638
           + L N     ++PD +  L  LQSL++  NR             L      G ++ +  +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPK 698
           G N L     +   + +V L +L    NK    +         +  L L  N I  I   
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEIPED 613

Query: 699 CFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVK 758
                                                                     V+
Sbjct: 614 FCAF---------------------------------------------------TDQVE 622

Query: 759 ILDLSSNKLGGEVPE--EIMDLAGLIALNLSRNTLTGQ-----ITPKIGQLKSLDFLDLS 811
            L  S NKL   +P       +  + +++ S N +  +      +    +  +   + LS
Sbjct: 623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 812 RNQFFGSIPSSLSQLSRLSVMDLSYNNLS 840
            N+         +  S +S + LS N ++
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =   99 bits (249), Expect = 1e-21
 Identities = 33/275 (12%), Positives = 77/275 (28%), Gaps = 28/275 (10%)

Query: 588 LNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEI 647
            N   + +  +    +     +  LSL      G +P      ++L ++  G +  +   
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 648 PTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMT 707
             +  E L   +    K         + L +   + + DL  + I+           +  
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 708 HEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKL 767
             K + +  ++N  T +             KA+             L  ++I+  +++  
Sbjct: 424 SLKDTQIGNLTNRITFI------------SKAI-----------QRLTKLQIIYFANSPF 460

Query: 768 GGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLS 827
             +              N                LK L  ++L        +P  L  L 
Sbjct: 461 TYDNIAV-----DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515

Query: 828 RLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNEL 862
            L  ++++ N               +     G ++
Sbjct: 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 5e-08
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 2/131 (1%)

Query: 736 FDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQI 795
           F+K +  W           G V  L L+     G VP+ I  L  L  L+   ++ T   
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 796 TPKIGQLKSLDFLDLSRNQFFGSIPS-SLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFST 854
                +  + D  +  +++         L    RL++ DL  + ++ + P    ++  S 
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDSR 422

Query: 855 SMYAGNELCGL 865
                 ++  L
Sbjct: 423 ISLKDTQIGNL 433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 16/130 (12%), Positives = 41/130 (31%), Gaps = 2/130 (1%)

Query: 727 DSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNL 786
           D+  T  +     +        +Y++   + + LD  + +         +        N 
Sbjct: 248 DNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW-NFNK 306

Query: 787 SRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSG 846
             +    Q    +     +  L L+     G +P ++ QL+ L V+    ++ +      
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV-SGRL 365

Query: 847 TQLQSFSTSM 856
              +  +  M
Sbjct: 366 FGDEELTPDM 375

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 11/100 (11%), Positives = 30/100 (30%), Gaps = 6/100 (6%)

Query: 87  KLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLS 146
              +   +      +     + +     L  L +  N+     + E +    +L  L ++
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR--KVDEKL--TPQLYILDIA 835

Query: 147 -NTEFAGPIPLQLGNL-SRLQVLDIGFNSLISGENLEWLS 184
            N   +  +      + + + VL       I G +   + 
Sbjct: 836 DNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  196 bits (500), Expect = 2e-53
 Identities = 102/594 (17%), Positives = 198/594 (33%), Gaps = 76/594 (12%)

Query: 111 ILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIG 170
           I      +DLS N            + S+L +L LS  E           L  L  L + 
Sbjct: 30  IPSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
            N +    +    S L+SL  L    + L+   +    + +L +LK L +    +     
Sbjct: 89  GNPI-QSFSPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKL 145

Query: 231 SSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVEL---INLGSNQLQGSIPEAFG 287
            +  Y ++ T+L  + +  N +  +I            ++   +++  N +     +AF 
Sbjct: 146 PA--YFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 288 HMPSLNTLFLASNQF--REIPKSLGNMCNLKSLTLSYNTLRG--DLSEIIQNLSDGCTKT 343
            +  L+ L L  N      +   L N+  L    L     +   +L     ++ +G    
Sbjct: 203 GI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 344 SLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
           ++    L            F   +++  +S+A   +     + V +  K +SL +    L
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQL 319

Query: 403 RGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIG--PRFPKWLR 460
           +   +     +L  L  L L  N  ++ F    +P   LS ++L    +           
Sbjct: 320 KQFPT----LDLPFLKSLTLTMNKGSISFKKVALP--SLSYLDLSRNALSFSGCCSYSDL 373

Query: 461 NQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDI 520
             N +  LD+S +G    +   F      L   +  ++ +K                   
Sbjct: 374 GTNSLRHLDLSFNGAI-IMSANFMGLE-ELQHLDFQHSTLKR------------------ 413

Query: 521 SSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWS 580
                      +   ++FL+L                  KL Y+D+S           + 
Sbjct: 414 -----------VTEFSAFLSL-----------------EKLLYLDISYTNTKIDFDGIFL 445

Query: 581 QFDSLAILNLANNSFFGKIPDSI-GFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG 639
              SL  L +A NSF      ++     NL  L L   +L       F    +L L+++ 
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS 693
            N L     +     L +L  L    N+   S  +      ++   +L++N+++
Sbjct: 506 HNNLLFLDSSHYN-QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  192 bits (491), Expect = 3e-52
 Identities = 102/622 (16%), Positives = 184/622 (29%), Gaps = 110/622 (17%)

Query: 237 NSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLF 296
           +  +S + I +  N L   +  + F+  S L  L +L   +++    +A+  +  L+ L 
Sbjct: 29  DIPSSTKNIDLSFNPLK-ILKSYSFSNFSELQWL-DLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 297 LASNQFREI-PKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEI 355
           L  N  +   P S   + +L++L      L    S  I  L       +L  L +  N I
Sbjct: 87  LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL------ITLKKLNVAHNFI 140

Query: 356 TGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQL----VKLESLFLHNNSLRGVISEA 409
                   F   ++L  + ++ N +       +  L        SL +  N +  +  +A
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200

Query: 410 FLSNLSNLTILYLADNSLTLEFSHDWIPPFQ------LSQVNLGSCKIGPRFPKWLRN-- 461
           F      L  L L  N  +       +          L        +    F   +    
Sbjct: 201 F--QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 462 -QNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDI 520
               I    ++ +         F     N+S  +L+   IK  L ++   F         
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLA-NVSAMSLAGVSIK-YLEDVPKHF--------- 307

Query: 521 SSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWS 580
                             L++ + +     +         L  + L+ N  S        
Sbjct: 308 --------------KWQSLSIIRCQLKQFPTLDLP----FLKSLTLTMNKGSISFK--KV 347

Query: 581 QFDSLAILNLANNSFFGKIPDSIGFLK--NLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638
              SL+ L+L+ N+       S   L   +L+ L L  N     + + F    +L  +D 
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDF 406

Query: 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPK 698
             + L           L  L+ L +               L ++  L ++ N+       
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466

Query: 699 CFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVK 758
               F   T+                                                + 
Sbjct: 467 NV--FANTTN------------------------------------------------LT 476

Query: 759 ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGS 818
            LDLS  +L          L  L  LN+S N L    +    QL SL  LD S N+   S
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 819 IPSSLSQLSRLSVMDLSYNNLS 840
                     L+  +L+ N+++
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  186 bits (475), Expect = 4e-50
 Identities = 94/537 (17%), Positives = 177/537 (32%), Gaps = 58/537 (10%)

Query: 187 SSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIV 246
           SS   +DLSF+ L    +     S    L+ L L  C++      +    +    L  ++
Sbjct: 32  SSTKNIDLSFNPLKILKS--YSFSNFSELQWLDLSRCEIETIEDKA---WHGLHHLSNLI 86

Query: 247 ILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREI- 305
           + GN +  S  P  F+  ++L  L      +L        G + +L  L +A N      
Sbjct: 87  LTGNPIQ-SFSPGSFSGLTSLENL-VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144

Query: 306 -PKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGG 364
            P    N+ NL  + LSYN ++      +Q L +         L +  N I         
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE--NPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 365 FSSLKRLSIANNRLNGTINKSVGQ-LVKLESLFLHNNSLRG-----VISEAFLSNLSNLT 418
              L  L++  N  +  I K+  Q L  L    L     +      +   + +  L ++T
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 419 ILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDT 478
           I                                             + ++ ++   I   
Sbjct: 263 IDEFRLTYTNDFSDD----------------------IVKFHCLANVSAMSLAGVSIKYL 300

Query: 479 VPNWFWNQTYNLSFFNLSNNQIKG----KLPNLSSRFHPYRPGIDISSNQFEGPIPQLPL 534
                    +     ++   Q+K      LP L S        + ++ N+      ++ L
Sbjct: 301 EDVPK---HFKWQSLSIIRCQLKQFPTLDLPFLKS--------LTLTMNKGSISFKKVAL 349

Query: 535 NA-SFLNLSKNKFSGSISFLCSITGH-KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLAN 592
            + S+L+LS+N  S S     S  G   L ++DLS N     +   +   + L  L+  +
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQH 408

Query: 593 NSFFGKIPDS-IGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWI 651
           ++       S    L+ L  L +       +    F   + L  + +  N       + +
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 652 GEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTH 708
                NL  L L   +           L  +Q+L++S NN+  +    +N   +++ 
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  183 bits (467), Expect = 4e-49
 Identities = 99/584 (16%), Positives = 184/584 (31%), Gaps = 93/584 (15%)

Query: 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRGDL 329
                 +L   +P+      S   + L+ N  + +   S  N   L+ L LS   +    
Sbjct: 16  YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 330 SEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQ 388
            +    L        L+ L L  N I    P  F G +SL+ L     +L    +  +GQ
Sbjct: 73  DKAWHGL------HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 389 LVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT----LEFSHDWIPPFQLSQV 444
           L+ L+ L + +N +      A+ SNL+NL  + L+ N +      +       P     +
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 445 NLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKL 504
           ++    I            ++  L +  +  S  +          L    L   + K   
Sbjct: 187 DMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD-E 244

Query: 505 PNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYI 564
            NL               +  EG +  + ++   L  + +     + F C      +  +
Sbjct: 245 RNLE----------IFEPSIMEG-LCDVTIDEFRLTYTNDFSDDIVKFHCLA---NVSAM 290

Query: 565 DLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELP 624
            L+   +     +   +      L++       + P     L  L+SL+L  N+ +    
Sbjct: 291 SLAGVSIKY--LEDVPKHFKWQSLSIIRCQL-KQFPTL--DLPFLKSLTLTMNKGSISFK 345

Query: 625 SFFTNGSQLTLMDLGKNGLSGEIP-TWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQ 683
                   L+ +DL +N LS     ++   G  +L  L L  N     +      L  +Q
Sbjct: 346 --KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQ 402

Query: 684 ILDLSSNNISGII-PKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLT 742
            LD   + +  +     F +   + +                                  
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLY---------------------------------- 428

Query: 743 WKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI-GQ 801
                            LD+S      +     + L  L  L ++ N+        +   
Sbjct: 429 -----------------LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 802 LKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845
             +L FLDLS+ Q           L RL ++++S+NNL     S
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  168 bits (427), Expect = 5e-44
 Identities = 81/547 (14%), Positives = 160/547 (29%), Gaps = 89/547 (16%)

Query: 101 LKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAG-PIPLQLG 159
           ++     S   L  L  L       + S     IG L  L  L +++       +P    
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 160 NLSRLQVLDIGFNSL--ISGENLEWLSHLS-SLIYLDLSFSNLSKFSNWMQVLSKLDSLK 216
           NL+ L  +D+ +N +  I+  +L++L       + LD+S + +    +      KL  L 
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210

Query: 217 ALY-LISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGS 275
                 S ++  T   +   L+    +        NL       +  +    ++   L  
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 276 NQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQN 335
                     F  + +++ + LA    + +   +      +SL++    L+         
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQF------- 322

Query: 336 LSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESL 395
                                           LK L++  N+ + +  K    L  L  L
Sbjct: 323 -------------------------PTLDLPFLKSLTLTMNKGSISFKKV--ALPSLSYL 355

Query: 396 FLHNNSLRGVISEAF-LSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPR 454
            L  N+L      ++     ++L  L L+ N   +                         
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII------------------------- 390

Query: 455 FPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPY 514
                    ++  LD  +S +        +     L + ++S    K             
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI------------ 438

Query: 515 RPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGR 574
                     F G +  L    + L ++ N F  +           L ++DLS   L   
Sbjct: 439 -----DFDGIFLG-LTSL----NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

Query: 575 LPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLT 634
               +     L +LN+++N+           L +L +L    NR+             L 
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548

Query: 635 LMDLGKN 641
             +L  N
Sbjct: 549 FFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  164 bits (417), Expect = 1e-42
 Identities = 101/581 (17%), Positives = 170/581 (29%), Gaps = 127/581 (21%)

Query: 280 GSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDG 339
           GS+      +P++ T      +  ++P  + +  + K++ LS+N L+   S    N    
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNF--- 55

Query: 340 CTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLH 398
              + L WL L   EI       + G   L  L +  N +      S   L  LE+L   
Sbjct: 56  ---SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 399 NNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKW 458
              L  + S      L  L  L +A N +                          + P +
Sbjct: 113 ETKLASLESFPI-GQLITLKKLNVAHNFIH-----------------------SCKLPAY 148

Query: 459 LRNQNQILSLDISN---SGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYR 515
             N   ++ +D+S      I+     +           ++S N I               
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF------------- 195

Query: 516 PGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRL 575
               I    F+G      +    L L  N  S +I   C      L    L         
Sbjct: 196 ----IQDQAFQG------IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 576 PDCWSQFDSLA--------ILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFF 627
                +   +            L   + F         L N+ ++SL    +        
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDV 303

Query: 628 TNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDL 687
               +   + + +  L  + PT     L  L  L+L  NK  GSI  +   L ++  LDL
Sbjct: 304 PKHFKWQSLSIIRCQLK-QFPT---LDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDL 357

Query: 688 SSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQ 747
           S N +S      +++                     L  +SL+                 
Sbjct: 358 SRNALSFSGCCSYSD---------------------LGTNSLRH---------------- 380

Query: 748 YEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK-IGQLKSLD 806
                       LDLS N     +    M L  L  L+   +TL           L+ L 
Sbjct: 381 ------------LDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 807 FLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGT 847
           +LD+S              L+ L+ + ++ N+      S  
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.6 bits (228), Expect = 4e-19
 Identities = 43/203 (21%), Positives = 70/203 (34%), Gaps = 31/203 (15%)

Query: 104 TISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSR 163
            +S++ + L+ L +LD   +     +      SL KL YL +S T            L+ 
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 164 LQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISC 223
           L  L +  NS          ++ ++L +LDLS   L + S    V   L  L+ L + S 
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW--GVFDTLHRLQLLNM-S- 505

Query: 224 DLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIP 283
                                     NNL   +    +N   +L  L +   N+++ S  
Sbjct: 506 -------------------------HNNLL-FLDSSHYNQLYSLSTL-DCSFNRIETSKG 538

Query: 284 EAFGHMPSLNTLFLASNQFREIP 306
                  SL    L +N    I 
Sbjct: 539 ILQHFPKSLAFFNLTNNSVACIC 561

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.4 bits (178), Expect = 3e-13
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 7/128 (5%)

Query: 101 LKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGN 160
            K       L L  L  L ++GN+F  +++     + + L++L LS  +           
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

Query: 161 LSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYL 220
           L RLQ+L++  N+ +   +    + L SL  LD SF+ +        +     SL    L
Sbjct: 496 LHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNRIETSKGI--LQHFPKSLAFFNL 552

Query: 221 ----ISCD 224
               ++C 
Sbjct: 553 TNNSVACI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  178 bits (454), Expect = 2e-46
 Identities = 115/603 (19%), Positives = 200/603 (33%), Gaps = 70/603 (11%)

Query: 118 LDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISG 177
                 N +   +P+    L+    L LS              L +LQ+L++G       
Sbjct: 9   AFYRFCNLT--QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 178 ENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLN 237
            + E   +L +L  LDL  S +            L  L  L L  C L   +     Y  
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHP--DAFQGLFHLFELRLYFCGLSDAVLKDG-YFR 120

Query: 238 SSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFG--HMPSLNTL 295
           +  +L  + +  N +        F   ++L  + +  SNQ+              +L+  
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI-DFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 296 FLASNQFREIPKSLGNMC-------NLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLA-- 346
            LA+N            C        L+ L +S N    D++    N        SL   
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239

Query: 347 ----WLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
                     + I     N   F+ L R S                   +  L L +  +
Sbjct: 240 HHIMGAGFGFHNIKDPDQNT--FAGLARSS-------------------VRHLDLSHGFV 278

Query: 403 RGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQ 462
             + S  F   L +L +L LA N +       +     L  +NL    +G  +       
Sbjct: 279 FSLNSRVF-ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337

Query: 463 NQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISS 522
            ++  +D+  + I+      F      L   +L +N +   +  + S        I +S 
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLE-KLQTLDLRDNALT-TIHFIPSIPD-----IFLSG 390

Query: 523 NQFEGPIPQLPLNASFLNLSKNKFSG--SISFLCSITGHKLDYIDLSNNLLSGRLPDC-W 579
           N+    +P++ L A+ ++LS+N+      + FL  +    L  + L+ N  S    D   
Sbjct: 391 NKLVT-LPKINLTANLIHLSENRLENLDILYFLLRVP--HLQILILNQNRFSSCSGDQTP 447

Query: 580 SQFDSLAILNLANNSFFGKI-----PDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLT 634
           S+  SL  L L  N            D    L +LQ L L +N L    P  F++ + L 
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

Query: 635 LMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISG 694
            + L  N L+  +         NL +L +  N+             ++ +LD++ N    
Sbjct: 508 GLSLNSNRLT-VLSHNDLPA--NLEILDISRNQLLA---PNPDVFVSLSVLDITHNKFIC 561

Query: 695 IIP 697
              
Sbjct: 562 ECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  175 bits (446), Expect = 2e-45
 Identities = 109/619 (17%), Positives = 208/619 (33%), Gaps = 82/619 (13%)

Query: 106 SSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQ 165
           +SS   L+ L  L+L       +   E   +L  L  L L +++     P     L  L 
Sbjct: 41  ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100

Query: 166 VLDIGFNSLISGE-NLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCD 224
            L + F  L        +  +L +L  LDLS + +           KL+SLK++   S  
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-YLHPSFGKLNSLKSIDFSSNQ 159

Query: 225 LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINL----------- 273
           +   +   +L      +L    +  N+L  S     +    N    + L           
Sbjct: 160 I-FLVCEHELEPLQGKTLSFFSLAANSLY-SRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217

Query: 274 ------GSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKS-LGNMC--NLKSLTLSYNT 324
                  SN +  S   +      +       +  ++  ++    +   +++ L LS+  
Sbjct: 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277

Query: 325 LRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTI 382
           +    S + + L        L  L L  N+I   + +  F G  +L+ L+++ N L    
Sbjct: 278 VFSLNSRVFETL------KDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELY 330

Query: 383 NKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLS 442
           + +   L K+  + L  N +  +I +     L  L  L L DN+LT       IP   LS
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLS 389

Query: 443 QVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK- 501
              L +                   + +S + + +    +F  +  +L    L+ N+   
Sbjct: 390 GNKLVTLPKINLTAN---------LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440

Query: 502 -------GKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLC 554
                   + P+L          + +  N  +           F  LS            
Sbjct: 441 CSGDQTPSENPSLEQ--------LFLGENMLQLAWETELCWDVFEGLS------------ 480

Query: 555 SITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSL 614
                 L  + L++N L+   P  +S   +L  L+L +N     +  +     NL+ L +
Sbjct: 481 -----HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDI 533

Query: 615 YNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPL 674
             N+L    P  F +   L+++D+  N    E         +N   +++          +
Sbjct: 534 SRNQLLAPNPDVFVS---LSVLDITHNKFICECELSTFINWLNHTNVTIAGP-PADIYCV 589

Query: 675 QLCHLANVQILDLSSNNIS 693
                + V +  LS+    
Sbjct: 590 YPDSFSGVSLFSLSTEGCD 608

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  173 bits (439), Expect = 1e-44
 Identities = 110/618 (17%), Positives = 198/618 (32%), Gaps = 102/618 (16%)

Query: 269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRG 327
            +       L   +P+    + +   L L+ N  R +   S   +  L+ L L       
Sbjct: 7   RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 328 DL-SEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTI-- 382
            +  E  +NL       +L  L L S++I   L    F G   L  L +    L+  +  
Sbjct: 63  TIDKEAFRNL------PNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLK 115

Query: 383 NKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHD--WIPPFQ 440
           +     L  L  L L  N +R +        L++L  +  + N + L   H+   +    
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175

Query: 441 LSQVNLGSCKIGPRFPKWLRNQNQIL------SLDISNSGISDTVPNWFWNQTYNLSFFN 494
           LS  +L +  +  R                   LD+S +G +  +   F N       F+
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235

Query: 495 LSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLC 554
           L                  +  G     +  +             +  +N F+G    L 
Sbjct: 236 LILA--------------HHIMGAGFGFHNIK-------------DPDQNTFAG----LA 264

Query: 555 SITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSL 614
             +   + ++DLS+  +       +     L +LNLA N       ++   L NLQ L+L
Sbjct: 265 RSS---VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 615 YNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPL 674
             N L     S F    ++  +DL KN ++  I     + L  L  L L+ N        
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT----- 375

Query: 675 QLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKS 734
            +  + ++  + LS N +  +                + + L  N   +L          
Sbjct: 376 TIHFIPSIPDIFLSGNKLVTLPKINLT---------ANLIHLSENRLENLDILYFLL--- 423

Query: 735 YFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEI-MDLAGLIALNLSRNTLTG 793
                              +  ++IL L+ N+      ++   +   L  L L  N L  
Sbjct: 424 ------------------RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465

Query: 794 QITPKI-----GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQ 848
               ++       L  L  L L+ N      P   S L+ L  + L+ N L+  +     
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDL 524

Query: 849 LQSFSTSMYAGNELCGLP 866
             +      + N+L    
Sbjct: 525 PANLEILDISRNQLLAPN 542

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  133 bits (335), Expect = 6e-32
 Identities = 88/469 (18%), Positives = 161/469 (34%), Gaps = 64/469 (13%)

Query: 105 ISSSLLILQHLTYLDLSGNNFSGSSIPEFIG-SLSKLSYLGLSNTEFAGPIPLQLGNLS- 162
           +  S   L  L  +D S N        E        LS+  L+       + +  G    
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 163 -----RLQVLDIGFNSL-----------ISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
                 L++LD+  N             IS      L     ++     F N+       
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 207 QVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSN 266
                  S++ L L    +  ++ S      +   L+V+ +  N +   I    F    N
Sbjct: 260 FAGLARSSVRHLDLSHGFV-FSLNSRV--FETLKDLKVLNLAYNKIN-KIADEAFYGLDN 315

Query: 267 LVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNTL 325
           L  L NL  N L       F  +P +  + L  N    I   +   +  L++L L  N  
Sbjct: 316 LQVL-NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-- 372

Query: 326 RGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNG-TINK 384
                     L+      S+  +FL  N++  +LP      +   + ++ NRL    I  
Sbjct: 373 ---------ALTTIHFIPSIPDIFLSGNKLV-TLPK--INLTANLIHLSENRLENLDILY 420

Query: 385 SVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQV 444
            + ++  L+ L L+ N       +   S   +L  L+L +N L L +  +          
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV----- 475

Query: 445 NLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKL 504
                             + +  L ++++ ++ ++P   ++    L   +L++N++    
Sbjct: 476 --------------FEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLT--- 517

Query: 505 PNLSSRFHPYRPGI-DISSNQFEGPIPQLPLNASFLNLSKNKFSGSISF 552
             LS    P    I DIS NQ   P P + ++ S L+++ NKF      
Sbjct: 518 -VLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECEL 565

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.0 bits (148), Expect = 2e-09
 Identities = 46/223 (20%), Positives = 78/223 (34%), Gaps = 17/223 (7%)

Query: 105 ISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQL-----G 159
           I   LL + HL  L L+ N FS  S  +       L  L L           +L      
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477

Query: 160 NLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALY 219
            LS LQVL +  N L S       SHL++L  L L+ + L+  S+         +L+ L 
Sbjct: 478 GLSHLQVLYLNHNYLNSLPP-GVFSHLTALRGLSLNSNRLTVLSHN----DLPANLEILD 532

Query: 220 LISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSI-YPWLFNVSSNLVELINLGSNQL 278
           +    L           +   SL V+ I  N            N  ++    I      +
Sbjct: 533 ISRNQL------LAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADI 586

Query: 279 QGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLS 321
               P++F  +   +      ++   +     ++  + ++TL+
Sbjct: 587 YCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLT 629

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  165 bits (419), Expect = 3e-43
 Identities = 93/508 (18%), Positives = 184/508 (36%), Gaps = 50/508 (9%)

Query: 239 STSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLA 298
             S + + +  N L   +  + F     L  L +L   ++Q     A+  +  L+TL L 
Sbjct: 27  PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVL-DLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 299 SNQFREIPK-SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEIT- 356
            N  + +   +   + +L+ L      L    +  I +L       +L  L +  N I  
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL------KTLKELNVAHNLIQS 138

Query: 357 -GSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLE----SLFLHNNSLRGVISEAFL 411
                 F   ++L+ L +++N++       +  L ++     SL L  N +  +   AF 
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF- 197

Query: 412 SNLSNLTILYLADNSLTLEFSHDWI---PPFQLSQVNLGSCKIGPRFPKWLRN------Q 462
                L  L L +N  +L      I      ++ ++ LG  +      K+ ++       
Sbjct: 198 -KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 463 NQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKG------------------KL 504
             I    ++            +N   N+S F+L +  I+                   K 
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316

Query: 505 PNLSSRFHPYRPGIDISSNQFEGPIPQLPLNA-SFLNLSKNKFSGSISFLCSITG-HKLD 562
               +        +  +SN+      ++ L +  FL+LS+N  S       S  G   L 
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 563 YIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGF--LKNLQSLSLYNNRLT 620
           Y+DLS N +   +   +   + L  L+  +++   ++ +   F  L+NL  L + +    
Sbjct: 377 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 621 GELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLA 680
                 F   S L ++ +  N         I   L NL  L L   +     P     L+
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 681 NVQILDLSSNNISGIIPKCFNNFTAMTH 708
           ++Q+L+++SN +  +    F+  T++  
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQK 522

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  159 bits (405), Expect = 2e-41
 Identities = 110/580 (18%), Positives = 189/580 (32%), Gaps = 72/580 (12%)

Query: 272 NLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRGDLS 330
                     IP+      S   L L+ N  R +   S  +   L+ L LS   ++    
Sbjct: 13  QCMELNFY-KIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 331 EIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQ 388
              Q+L      + L+ L L  N I  SL    F G SSL++L      L    N  +G 
Sbjct: 70  GAYQSL------SHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 389 LVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLS----QV 444
           L  L+ L + +N ++      + SNL+NL  L L+ N +   +  D     Q+      +
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 445 NLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKL 504
           +L    +          + ++  L + N+  S  V          L    L   + +   
Sbjct: 183 DLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN-E 240

Query: 505 PNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYI 564
            NL               +  EG      L      L+   +              +   
Sbjct: 241 GNLE----------KFDKSALEGLCN---LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 565 DLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELP 624
            L +  +  R+ D  S       L L N  F          LK+L+ L+  +N+      
Sbjct: 288 SLVSVTIE-RVKDF-SYNFGWQHLELVNCKFGQFPTLK---LKSLKRLTFTSNKGGNAFS 342

Query: 625 SFFTNGSQLTLMDLGKNGLSG-EIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQ 683
               +   L  +DL +NGLS     +    G  +L  L L  N    ++      L  ++
Sbjct: 343 --EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399

Query: 684 ILDLSSNNISGIIPKC-FNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLT 742
            LD   +N+  +     F +   + +     L +   +             S        
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIY-----LDISHTHTRVAFNGIFNGLSS-------- 446

Query: 743 WKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD-LAGLIALNLSRNTLTGQITPKI-G 800
                         +++L ++ N        +I   L  L  L+LS+  L  Q++P    
Sbjct: 447 --------------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFN 491

Query: 801 QLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLS 840
            L SL  L+++ NQ          +L+ L  + L  N   
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  149 bits (378), Expect = 6e-38
 Identities = 105/521 (20%), Positives = 179/521 (34%), Gaps = 42/521 (8%)

Query: 106 SSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQ 165
           S S      L  LDLS      +       SLS LS L L+              LS LQ
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 166 VLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDL 225
            L     +L S EN   + HL +L  L+++ + +  F    +  S L +L+ L L S  +
Sbjct: 104 KLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKI 161

Query: 226 PPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE- 284
                +    L+    L + + L  N  + I P  F     L +L  L +N    ++ + 
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKL-TLRNNFDSLNVMKT 219

Query: 285 AFGHMPSLNTLFLASNQFREIPK----SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGC 340
               +  L    L   +FR            +  L +LT+    L      +   +    
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 341 TKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNN 400
             T+++   L S  I   + +F      + L + N +          +L  L+ L   +N
Sbjct: 280 CLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFG---QFPTLKLKSLKRLTFTSN 335

Query: 401 SLRGVISEAFLSNLSNLTILYLADNSLTLE--FSHDWIPPFQLSQVNLGSCKIGPRFPKW 458
                 SE    +L +L  L L+ N L+ +   S        L  ++L    +       
Sbjct: 336 KGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391

Query: 459 LRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGI 518
                Q+  LD  +S +        +    NL + ++S+   +                 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR----------------- 434

Query: 519 DISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDC 578
              +  F G +  L      L ++ N F  +           L ++DLS   L    P  
Sbjct: 435 VAFNGIFNG-LSSL----EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 579 WSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRL 619
           ++   SL +LN+A+N            L +LQ + L+ N  
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  129 bits (325), Expect = 3e-31
 Identities = 85/464 (18%), Positives = 174/464 (37%), Gaps = 42/464 (9%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQV----L 167
           L+ L  L+++ N      +PE+  +L+ L +L LS+ +        L  L ++ +    L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 168 DIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPP 227
           D+  N +   +          L  L L  +N    +     +  L  L+   L+  +   
Sbjct: 183 DLSLNPMNFIQ--PGAFKEIRLHKLTLR-NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 228 TIPSSDLYLNSSTSLEVIVILGNNLT--DSIYPWLFNVSSNLVELINLGSNQLQGSIPEA 285
                    ++   L  + I    L   D     + ++ + L  + +     +     + 
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 286 FGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSL 345
           F +      L L + +F + P     + +LK LT + N           N        SL
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNK--------GGNAFSEVDLPSL 349

Query: 346 AWLFLDSNEITGS---LPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
            +L L  N ++       +  G +SLK L ++ N +  T++ +   L +LE L   +++L
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL 408

Query: 403 RGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKW-LRN 461
           + +   +   +L NL  L ++     + F+  +     L  + +        F       
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 462 QNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-------GKLPNLSSRFHPY 514
              +  LD+S   +   +    +N   +L   N+++NQ+K        +L +L       
Sbjct: 469 LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK----- 522

Query: 515 RPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITG 558
              I + +N ++   P++   + +LN +  K  GS    CS +G
Sbjct: 523 ---IWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA--KCSGSG 561

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 99.0 bits (247), Expect = 2e-21
 Identities = 63/318 (19%), Positives = 104/318 (32%), Gaps = 45/318 (14%)

Query: 87  KLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLS 146
            L +   ++         I      L +++   L            +      L  +   
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
             +           L  L+ L    N      N      L SL +LDLS + LS      
Sbjct: 316 FGQ------FPTLKLKSLKRLTFTSNKGG---NAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 207 QVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSN 266
           Q      SLK L L    +  T+ S+         LE +    +NL       +F    N
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSN---FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 267 LVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLR 326
           L+ L ++     + +    F  + SL  L +A N F+E                      
Sbjct: 423 LIYL-DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-------------------- 461

Query: 327 GDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINK 384
             L +I   L       +L +L L   ++   L    F   SSL+ L++A+N+L    + 
Sbjct: 462 --LPDIFTEL------RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDG 512

Query: 385 SVGQLVKLESLFLHNNSL 402
              +L  L+ ++LH N  
Sbjct: 513 IFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG 817
                       ++P+ +        L+LS N L    +        L  LDLSR +   
Sbjct: 10  ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPSGT 847
               +   LS LS + L+ N +   +  G 
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQ-SLALGA 95

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  156 bits (397), Expect = 4e-41
 Identities = 107/506 (21%), Positives = 198/506 (39%), Gaps = 84/506 (16%)

Query: 104 TISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSR 163
           T + S   L  +T L             + +  L+ L+ +  SN +     P  L NL++
Sbjct: 37  TDTVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTK 91

Query: 164 LQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISC 223
           L  + +  N +    ++  L++L++L  L L  + ++        L  L +L  L L S 
Sbjct: 92  LVDILMNNNQI---ADITPLANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSN 144

Query: 224 DLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIP 283
            +  +  S+   L S   L      GN +TD          + L  L ++ SN++  S  
Sbjct: 145 TI--SDISALSGLTSLQQLS----FGNQVTDLKP---LANLTTLERL-DISSNKV--SDI 192

Query: 284 EAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT 343
                + +L +L   +NQ  +I   LG + NL  L+L+ N L+      + +L      T
Sbjct: 193 SVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKD--IGTLASL------T 243

Query: 344 SLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLR 403
           +L  L L +N+I+ +L    G + L  L +  N+++      +  L  L +L L+ N L 
Sbjct: 244 NLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300

Query: 404 GVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQN 463
            +     +SNL NLT L L  N+++                      I P     + +  
Sbjct: 301 DISP---ISNLKNLTYLTLYFNNIS---------------------DISP-----VSSLT 331

Query: 464 QILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-----GKLPNLSSRFHPYRPGI 518
           ++  L   N+ +SD   +   N T N+++ +  +NQI        L  ++         +
Sbjct: 332 KLQRLFFYNNKVSD--VSSLANLT-NINWLSAGHNQISDLTPLANLTRITQ--------L 380

Query: 519 DISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSIT-GHKLDYIDLSNNLLSGRLPD 577
            ++   +         N S  N  KN  +G++    +I+ G      D++ NL S    +
Sbjct: 381 GLNDQAWTNAPVNYKANVSIPNTVKN-VTGALIAPATISDGGSYTEPDITWNLPSY-TNE 438

Query: 578 CWSQFDSLAILNLANNSFFGKIPDSI 603
               F     +     +F G +   +
Sbjct: 439 VSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  150 bits (380), Expect = 7e-39
 Identities = 94/522 (18%), Positives = 190/522 (36%), Gaps = 86/522 (16%)

Query: 158 LGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKA 217
              L+      +G  ++    +    + L  +  L      +         +  L++L  
Sbjct: 20  DTALAEKMKTVLGKTNVT---DTVSQTDLDQVTTLQADRLGIKSIDG----VEYLNNLTQ 72

Query: 218 LYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQ 277
           +   +  L    P  +L     T L  I++  N + D          +NL  L  L +NQ
Sbjct: 73  INFSNNQLTDITPLKNL-----TKLVDILMNNNQIADITP---LANLTNLTGL-TLFNNQ 123

Query: 278 LQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLS 337
           +    P    ++ +LN L L+SN   +I  +L  + +L+ L+             + +L 
Sbjct: 124 ITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ---------VTDLK 171

Query: 338 DGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFL 397
                T+L  L + SN+++  +      ++L+ L   NN+++      +G L  L+ L L
Sbjct: 172 PLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228

Query: 398 HNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPK 457
           + N L+ + +   L++L+NLT L LA+N ++       + P                   
Sbjct: 229 NGNQLKDIGT---LASLTNLTDLDLANNQISN------LAPLS----------------- 262

Query: 458 WLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-----GKLPNLSSRFH 512
                 ++  L +  + IS+  P         L+   L+ NQ++       L NL+    
Sbjct: 263 ---GLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISPISNLKNLTY--- 313

Query: 513 PYRPGIDISSNQFEGPIPQLPLNA-SFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLL 571
                + +  N      P   L     L    NK S  +S L ++T   ++++   +N +
Sbjct: 314 -----LTLYFNNISDISPVSSLTKLQRLFFYNNKVS-DVSSLANLT--NINWLSAGHNQI 365

Query: 572 SGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGS 631
           S   P   +    +  L L + ++     +    +    ++      L    P+  ++G 
Sbjct: 366 SDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGG 421

Query: 632 QLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIP 673
             T  D+  N  S              V +   +  F+G++ 
Sbjct: 422 SYTEPDITWNLPS-YTNEVSYT-FSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  145 bits (369), Expect = 2e-37
 Identities = 110/545 (20%), Positives = 203/545 (37%), Gaps = 95/545 (17%)

Query: 163 RLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLIS 222
            L    I  ++ I+   +   + L+  +   L  +N++   +     + LD +  L    
Sbjct: 2   PLGSATITQDTPIN--QIFTDTALAEKMKTVLGKTNVTDTVS----QTDLDQVTTLQADR 55

Query: 223 CDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSI 282
             +               S++ +      L             NL ++ N  +NQL    
Sbjct: 56  LGI--------------KSIDGV----EYLN------------NLTQI-NFSNNQLTDIT 84

Query: 283 PEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTK 342
           P    ++  L  + + +NQ  +I   L N+ NL  LTL  N +     + ++NL      
Sbjct: 85  P--LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITD--IDPLKNL------ 133

Query: 343 TSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
           T+L  L L SN I+  +    G +SL++LS  N   +    K +  L  LE L + +N +
Sbjct: 134 TNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKV 189

Query: 403 RGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPF----QLSQVNLGSCKIGPRFPKW 458
             +   + L+ L+NL  L   +N ++       I P      L +++L   ++  +    
Sbjct: 190 SDI---SVLAKLTNLESLIATNNQISD------ITPLGILTNLDELSLNGNQL--KDIGT 238

Query: 459 LRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-----GKLPNLSSRFHP 513
           L +   +  LD++N+ IS+  P      T  L+   L  NQI        L  L++    
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGLT-KLTELKLGANQISNISPLAGLTALTN---- 291

Query: 514 YRPGIDISSNQFEGPIPQLPL-NASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLS 572
               ++++ NQ E   P   L N ++L L  N  S  IS + S+T  KL  +   NN +S
Sbjct: 292 ----LELNENQLEDISPISNLKNLTYLTLYFNNIS-DISPVSSLT--KLQRLFFYNNKVS 344

Query: 573 GRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQ 632
                  +   ++  L+  +N      P  +  L  +  L L +   T    ++  N S 
Sbjct: 345 D--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSI 400

Query: 633 LTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNI 692
              +      L    P  I +   +     +  N  +          +    +   +   
Sbjct: 401 PNTVKNVTGALI--APATISD-GGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTF 456

Query: 693 SGIIP 697
           SG + 
Sbjct: 457 SGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  138 bits (350), Expect = 6e-35
 Identities = 108/562 (19%), Positives = 197/562 (35%), Gaps = 108/562 (19%)

Query: 241 SLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASN 300
            L    I  +   + I+       +  ++   LG   +  ++      +  + TL     
Sbjct: 2   PLGSATITQDTPINQIFT--DTALAEKMKT-VLGKTNVTDTVS--QTDLDQVTTLQADRL 56

Query: 301 QFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLP 360
             + I   +  + NL  +  S N L  D++ + +NL      T L  + +++N+I   + 
Sbjct: 57  GIKSID-GVEYLNNLTQINFSNNQLT-DITPL-KNL------TKLVDILMNNNQIA-DIT 106

Query: 361 NFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTIL 420
                ++L  L++ NN++       +  L  L  L L +N++  + +   LS L++L  L
Sbjct: 107 PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA---LSGLTSLQQL 161

Query: 421 YLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVP 480
              +    L+               L +                +  LDIS++ +SD   
Sbjct: 162 SFGNQVTDLK--------------PLANLT-------------TLERLDISSNKVSD--I 192

Query: 481 NWFWNQTYNLSFFNLSNNQIK-----GKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPL- 534
           +     T NL     +NNQI      G L NL          + ++ NQ +       L 
Sbjct: 193 SVLAKLT-NLESLIATNNQISDITPLGILTNLDE--------LSLNGNQLKDIGTLASLT 243

Query: 535 NASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNS 594
           N + L+L+ N+ S +++ L  +T  KL  + L  N +S       +   +L  L L  N 
Sbjct: 244 NLTDLDLANNQIS-NLAPLSGLT--KLTELKLGANQISN--ISPLAGLTALTNLELNENQ 298

Query: 595 FFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEG 654
                P  I  LKNL  L+LY N ++   P   ++ ++L  +    N +S          
Sbjct: 299 LEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSL---AN 351

Query: 655 LVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNL 714
           L N+  LS   N+ +   PL   +L  +  L L+    +        N +     K    
Sbjct: 352 LTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

Query: 715 TLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEE 774
            LI+                                 S  G     D++ N       E 
Sbjct: 410 ALIAP-----------------------------ATISDGGSYTEPDITWNLP-SYTNEV 439

Query: 775 IMDLAGLIALNLSRNTLTGQIT 796
               +  + +     T +G +T
Sbjct: 440 SYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  135 bits (343), Expect = 6e-34
 Identities = 107/557 (19%), Positives = 188/557 (33%), Gaps = 126/557 (22%)

Query: 290 PSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLF 349
           P  +          +I  +   +       L    +   +S    +L        +  L 
Sbjct: 2   PLGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVS--QTDL------DQVTTLQ 52

Query: 350 LDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEA 409
            D   I  S+      ++L +++ +NN+L       +  L KL  + ++NN +  +    
Sbjct: 53  ADRLGIK-SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-- 107

Query: 410 FLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLD 469
            L+NL+NLT L L +N +T       I P +                    N   +  L+
Sbjct: 108 -LANLTNLTGLTLFNNQITD------IDPLK--------------------NLTNLNRLE 140

Query: 470 ISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK----GKLPNLSSRFHPYRPGIDISSNQF 525
           +S++ ISD       +   +L   +  N          L  L                  
Sbjct: 141 LSSNTISDISA---LSGLTSLQQLSFGNQVTDLKPLANLTTLER---------------- 181

Query: 526 EGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSL 585
                        L++S NK S  IS L  +T   L+ +  +NN +S   P       +L
Sbjct: 182 -------------LDISSNKVS-DISVLAKLT--NLESLIATNNQISDITPL--GILTNL 223

Query: 586 AILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSG 645
             L+L  N    K   ++  L NL  L L NN+++   P   +  ++LT + LG N +S 
Sbjct: 224 DELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279

Query: 646 EIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTA 705
             P     GL  L  L L  N+     P+   +L N+  L L  NNIS I P   ++ T 
Sbjct: 280 ISPL---AGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP--VSSLTK 332

Query: 706 MTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSN 765
           +       L   +N  + +                           + L  +  L    N
Sbjct: 333 LQ-----RLFFYNNKVSDV------------------------SSLANLTNINWLSAGHN 363

Query: 766 KLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQ 825
           ++       + +L  +  L L+    T           S+     +        P+++S 
Sbjct: 364 QISD--LTPLANLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGAL-IAPATISD 419

Query: 826 LSRLSVMDLSYNNLSGK 842
               +  D+++N  S  
Sbjct: 420 GGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  117 bits (296), Expect = 6e-28
 Identities = 95/475 (20%), Positives = 169/475 (35%), Gaps = 76/475 (16%)

Query: 394 SLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGP 453
           +    +  +  + +    + L+      L   ++T   S   +   Q++ +      I  
Sbjct: 6   ATITQDTPINQIFT---DTALAEKMKTVLGKTNVTDTVSQTDLD--QVTTLQADRLGI-- 58

Query: 454 RFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-----GKLPNLS 508
           +    +   N +  ++ SN+ ++D  P    N T  L    ++NNQI        L NL+
Sbjct: 59  KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLT-KLVDILMNNNQIADITPLANLTNLT 115

Query: 509 SRFHPYRPGIDISSNQFEGPIPQLPL-NASFLNLSKNKFSGSISFLCSITGHKLDYIDLS 567
                    + + +NQ     P   L N + L LS N  S  IS L  +T   L  +   
Sbjct: 116 G--------LTLFNNQITDIDPLKNLTNLNRLELSSNTIS-DISALSGLT--SLQQLSFG 164

Query: 568 NNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFF 627
           N +         +   +L  L++++N         +  L NL+SL   NN+++    +  
Sbjct: 165 NQVTD---LKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISD--ITPL 217

Query: 628 TNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDL 687
              + L  + L  N L  +I T     L NL  L L +N+ +   PL    L  +  L L
Sbjct: 218 GILTNLDELSLNGNQLK-DIGTL--ASLTNLTDLDLANNQISNLAPLS--GLTKLTELKL 272

Query: 688 SSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQ 747
            +N IS I P      TA+T     NL L  N    +                       
Sbjct: 273 GANQISNISP--LAGLTALT-----NLELNENQLEDI----------------------- 302

Query: 748 YEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDF 807
               S L  +  L L  N +       +  L  L  L    N ++      +  L ++++
Sbjct: 303 -SPISNLKNLTYLTLYFNNI--SDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINW 357

Query: 808 LDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNEL 862
           L    NQ   S  + L+ L+R++ + L+    +    +     S   ++      
Sbjct: 358 LSAGHNQI--SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  153 bits (389), Expect = 2e-39
 Identities = 108/583 (18%), Positives = 198/583 (33%), Gaps = 85/583 (14%)

Query: 115 LTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSL 174
               D    +F+  SIP  +   + +  L LS  +        L   + LQVL +  +  
Sbjct: 7   SGVCDGRSRSFT--SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR- 61

Query: 175 ISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDL 234
           I+    +    L SL +LDLS ++LS  S+       L SLK L L              
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSS--SWFGPLSSLKYLNL-------------- 105

Query: 235 YLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE-AFGHMPSLN 293
                        +GN         LF   +NL  L  +G+ +    I    F  + SLN
Sbjct: 106 -------------MGNPYQTLGVTSLFPNLTNLQTL-RIGNVETFSEIRRIDFAGLTSLN 151

Query: 294 TLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDS 352
            L + +   R     SL ++ ++  LTL  +     L      L      +S+ +L L  
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL------SSVRYLELRD 205

Query: 353 NEITG-SLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFL 411
             +                +     R +   ++S  +L+KL    L  + +         
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE-------F 258

Query: 412 SNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDIS 471
            + +   +     +   +      +    + ++++    +            ++  + + 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 472 NSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQ 531
           NS +   VP  F     +L F +LS N +                   + ++  +G  P 
Sbjct: 319 NSKVF-LVPCSFSQHLKSLEFLDLSENLMV---------------EEYLKNSACKGAWPS 362

Query: 532 LPLNASFLNLSKNKFSGSISFLCSITGH--KLDYIDLSNNLLSGRLPDCWSQFDSLAILN 589
           L      L LS+N    S+     I      L  +D+S N     +PD     + +  LN
Sbjct: 363 L----QTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN 416

Query: 590 LANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPT 649
           L++      +   I   + L+ L + NN L     SF     +L  + + +N L   +P 
Sbjct: 417 LSSTG-IRVVKTCI--PQTLEVLDVSNNNLD----SFSLFLPRLQELYISRNKLK-TLPD 468

Query: 650 WIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNI 692
                   L+V+ +  N+           L ++Q + L +N  
Sbjct: 469 --ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  147 bits (373), Expect = 2e-37
 Identities = 105/612 (17%), Positives = 191/612 (31%), Gaps = 134/612 (21%)

Query: 237 NSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLF 296
             + +++ + +  N +T  I        +NL  L  L S+++     +AF  + SL  L 
Sbjct: 23  GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVL-ILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 297 LASNQFREIPKS-LGNMCNLKSLTLSYNTLRG-DLSEIIQNLSDGCTKTSLAWLFLDSNE 354
           L+ N    +  S  G + +LK L L  N  +   ++ +  NL      T+L  L + + E
Sbjct: 81  LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL------TNLQTLRIGNVE 134

Query: 355 ITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLS 412
               +    F G +SL  L I    L    ++S+  +  +  L LH +    ++      
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA-D 193

Query: 413 NLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISN 472
            LS++  L L D +L              S +              L  +  +L  D S 
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK------------LAFRGSVL-TDESF 240

Query: 473 SGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQL 532
           + +   +          + F + + N +                                
Sbjct: 241 NELLKLLRYILELS--EVEFDDCTLNGLG------------------------------- 267

Query: 533 PLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLAN 592
                  N S++     +  + ++T   +  + +    L   L   +S  + +  + + N
Sbjct: 268 -----DFNPSESDVVSELGKVETVT---IRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319

Query: 593 NSFFGKIPDSIGFLKNLQSLSLYNNRLTGEL---PSFFTNGSQLTLMDLGKNGLSGEIPT 649
           +  F         LK+L+ L L  N +  E     +       L  + L +N L   +  
Sbjct: 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQK 378

Query: 650 WIG--EGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMT 707
                  L NL  L +  N F+  +P        ++ L+LSS                + 
Sbjct: 379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS-----------TGIRVVK 426

Query: 708 HEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKL 767
                 L                                            +LD+S+N L
Sbjct: 427 TCIPQTLE-------------------------------------------VLDVSNNNL 443

Query: 768 GGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLS 827
                   + L  L  L +SRN L     P       L  + +SRNQ          +L+
Sbjct: 444 D-SFS---LFLPRLQELYISRNKLK--TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLT 497

Query: 828 RLSVMDLSYNNL 839
            L  + L  N  
Sbjct: 498 SLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  127 bits (320), Expect = 1e-30
 Identities = 78/430 (18%), Positives = 156/430 (36%), Gaps = 62/430 (14%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQ-LGNLSRLQVLDIG 170
           L  L YL+L GN +    +     +L+ L  L + N E    I       L+ L  L+I 
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
             SL + ++ + L  +  + +L L  S  +           L S++ L L   +L     
Sbjct: 157 ALSLRNYQS-QSLKSIRDIHHLTLHLSESAFLLE--IFADILSSVRYLELRDTNLARFQF 213

Query: 231 SSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVEL-------------------- 270
           S       S+ ++ +   G+ LTD  +  L  +   ++EL                    
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 271 -----------------INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLG-NM 312
                            +++    L   +   +  +  +  + + +++   +P S   ++
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333

Query: 313 CNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN----FGGFSSL 368
            +L+ L LS N +     E ++N +      SL  L L  N +  S+           +L
Sbjct: 334 KSLEFLDLSENLMV---EEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNL 389

Query: 369 KRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
             L I+ N  +  +  S     K+  L L +  +R V           L +L +++N+L 
Sbjct: 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV----KTCIPQTLEVLDVSNNNLD 444

Query: 429 LEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTY 488
                      +L ++ +   K+    P        +L + IS + +  +VP+  +++  
Sbjct: 445 SFSLF----LPRLQELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLK-SVPDGIFDRLT 497

Query: 489 NLSFFNLSNN 498
           +L    L  N
Sbjct: 498 SLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  109 bits (273), Expect = 9e-25
 Identities = 66/362 (18%), Positives = 126/362 (34%), Gaps = 35/362 (9%)

Query: 519 DISSNQFEGPIPQLPLNASFLNLSKNKFS----GSISFLCSITGHKLDYIDLSNNLLSGR 574
           D  S  F      L      L+LS NK +    G +          L  + L ++ ++  
Sbjct: 11  DGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRAC-----ANLQVLILKSSRINTI 65

Query: 575 LPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTG-ELPSFFTNGSQL 633
             D +    SL  L+L++N          G L +L+ L+L  N      + S F N + L
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125

Query: 634 TLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS 693
             + +G      EI      GL +L  L +K+          L  + ++  L L  +  +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 694 GIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQST 753
            ++    +  +++ +     L L         +  L   +       L ++GS    +S 
Sbjct: 186 FLLEIFADILSSVRY-----LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 754 LGLVK------------ILDLSSNKLGGEVPEEI--------MDLAGLIALNLSRNTLTG 793
             L+K              D + N LG   P E         ++   +  L++ +  L  
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 794 QITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFS 853
            ++     L+ +  + +  ++ F    S    L  L  +DLS N +  +    +  +   
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 854 TS 855
            S
Sbjct: 361 PS 362

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  108 bits (271), Expect = 1e-24
 Identities = 64/485 (13%), Positives = 149/485 (30%), Gaps = 95/485 (19%)

Query: 365 FSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLAD 424
            +++K L ++ N++    +  +     L+ L L ++ +  +  +AF  +L +L  L L+D
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF-YSLGSLEHLDLSD 83

Query: 425 NSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFW 484
           N L+       +                     W    + +  L++  +          +
Sbjct: 84  NHLS------SLSS------------------SWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 485 NQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKN 544
               NL    + N +   ++  +                 F G +  L    + L +   
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRID----------------FAG-LTSL----NELEIKAL 158

Query: 545 KFS----GSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIP 600
                   S+  +       + ++ L  +  +  L        S+  L L + +      
Sbjct: 159 SLRNYQSQSLKSI-----RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 601 DSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVV 660
             +   +    +     R +      F    +L    L  + +  +             +
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD-------DCTLNGL 266

Query: 661 LSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNY 720
                ++ +    L       ++ L +    +   +   ++    +       +T+ ++ 
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR-----ITVENSK 321

Query: 721 YTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEE---IMD 777
              +     +  KS                      ++ LDLS N +  E  +       
Sbjct: 322 VFLVPCSFSQHLKS----------------------LEFLDLSENLMVEEYLKNSACKGA 359

Query: 778 LAGLIALNLSRNTLT--GQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLS 835
              L  L LS+N L    +    +  LK+L  LD+SRN F   +P S     ++  ++LS
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLS 418

Query: 836 YNNLS 840
              + 
Sbjct: 419 STGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 81.3 bits (201), Expect = 5e-16
 Identities = 46/309 (14%), Positives = 97/309 (31%), Gaps = 50/309 (16%)

Query: 76  VNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQ--HLTYLDLSGNNFSGSSIPEF 133
           +        V   D  +  +      +  + S L  ++   +  L +         +   
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTV 305

Query: 134 IGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSL--ISGENLEWLSHLSSLIY 191
              L K+  + + N++          +L  L+ LD+  N +     +N        SL  
Sbjct: 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365

Query: 192 LDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNN 251
           L LS ++L       ++L  L +L +L +                 S  +   +      
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDI-----------------SRNTFHPM------ 402

Query: 252 LTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGN 311
                 P        +  L NL S  ++  +        +L  L +++N        L  
Sbjct: 403 ------PDSCQWPEKMRFL-NLSSTGIR-VVK--TCIPQTLEVLDVSNNNLDSFSLFLP- 451

Query: 312 MCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKR 370
              L+ L +S N         ++ L D      L  + +  N++       F   +SL++
Sbjct: 452 --RLQELYISRNK--------LKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501

Query: 371 LSIANNRLN 379
           + +  N  +
Sbjct: 502 IWLHTNPWD 510

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  147 bits (373), Expect = 8e-39
 Identities = 76/391 (19%), Positives = 159/391 (40%), Gaps = 50/391 (12%)

Query: 115 LTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSL 174
              L       +          L++     L        +      L  +  L +    +
Sbjct: 2   AATLATLPAPINQI---FPDADLAEGIRAVLQKASVTDVVTQ--EELESITKLVVAGEKV 56

Query: 175 ISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDL 234
               +++ + +L++L YL+L+ + ++  S     LS L  L  LY+ +  +  T  S+  
Sbjct: 57  ---ASIQGIEYLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTNKI--TDISA-- 105

Query: 235 YLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNT 294
            L + T+L  + +  +N++D          + +  L NLG+N    S      +M  LN 
Sbjct: 106 -LQNLTNLRELYLNEDNISDISP---LANLTKMYSL-NLGANHNL-SDLSPLSNMTGLNY 159

Query: 295 LFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNE 354
           L +  ++ +++   + N+ +L SL+L+YN +  D+S  + +L      TSL +     N+
Sbjct: 160 LTVTESKVKDVT-PIANLTDLYSLSLNYNQIE-DISP-LASL------TSLHYFTAYVNQ 210

Query: 355 ITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
           IT  +      + L  L I NN++       +  L +L  L +  N +  + +   + +L
Sbjct: 211 IT-DITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA---VKDL 264

Query: 415 SNLTILYLADNSLTLEFSHDWIPPF----QLSQVNLGSCKIGPRFPKWLRNQNQILSLDI 470
           + L +L +  N ++       I       QL+ + L + ++G    + +     + +L +
Sbjct: 265 TKLKMLNVGSNQIS------DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 471 SNSGISDTVPNWFWNQTYNLSFFNLSNNQIK 501
           S + I+D  P         +   + +N  IK
Sbjct: 319 SQNHITDIRP---LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  142 bits (361), Expect = 3e-37
 Identities = 83/317 (26%), Positives = 143/317 (45%), Gaps = 35/317 (11%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGF 171
           L+ +T L ++G     +SI   I  L+ L YL L+  +     P  L NL +L  L IG 
Sbjct: 43  LESITKLVVAGEKV--ASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGT 97

Query: 172 NSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPS 231
           N +    ++  L +L++L  L L+  N+S  S     L+ L  + +L L +      +  
Sbjct: 98  NKI---TDISALQNLTNLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLSP 150

Query: 232 SDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPS 291
               L++ T L  + +  + + D          ++L  L +L  NQ++   P     + S
Sbjct: 151 ----LSNMTGLNYLTVTESKVKDVTP---IANLTDLYSL-SLNYNQIEDISP--LASLTS 200

Query: 292 LNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLD 351
           L+      NQ  +I   + NM  L SL +  N +       + NL      + L WL + 
Sbjct: 201 LHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITD--LSPLANL------SQLTWLEIG 251

Query: 352 SNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFL 411
           +N+I+  +      + LK L++ +N+++      +  L +L SLFL+NN L     E   
Sbjct: 252 TNQIS-DINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVI- 307

Query: 412 SNLSNLTILYLADNSLT 428
             L+NLT L+L+ N +T
Sbjct: 308 GGLTNLTTLFLSQNHIT 324

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  142 bits (360), Expect = 3e-37
 Identities = 68/322 (21%), Positives = 134/322 (41%), Gaps = 35/322 (10%)

Query: 107 SSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQV 166
             +  L +L YL+L+GN  +       + +L KL+ L +   +        L NL+ L+ 
Sbjct: 60  QGIEYLTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRE 114

Query: 167 LDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLP 226
           L +  +++    ++  L++L+ +  L+L  ++       +  LS +  L  L +    + 
Sbjct: 115 LYLNEDNI---SDISPLANLTKMYSLNLGANHNLSD---LSPLSNMTGLNYLTVTESKVK 168

Query: 227 PTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAF 286
              P ++L     T L  + +  N + D          ++L        NQ+    P   
Sbjct: 169 DVTPIANL-----TDLYSLSLNYNQIEDISP---LASLTSLHYF-TAYVNQITDITP--V 217

Query: 287 GHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLA 346
            +M  LN+L + +N+  ++   L N+  L  L +  N +  D++ +          T L 
Sbjct: 218 ANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQIS-DINAVKDL-------TKLK 268

Query: 347 WLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVI 406
            L + SN+I+  +      S L  L + NN+L     + +G L  L +LFL  N +  + 
Sbjct: 269 MLNVGSNQIS-DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 407 SEAFLSNLSNLTILYLADNSLT 428
               L++LS +     A+  + 
Sbjct: 328 P---LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (336), Expect = 5e-34
 Identities = 82/410 (20%), Positives = 164/410 (40%), Gaps = 73/410 (17%)

Query: 292 LNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLD 351
             TL        +I     ++       L   ++   ++   + L       S+  L + 
Sbjct: 2   AATLATLPAPINQIF-PDADLAEGIRAVLQKASVTDVVT--QEEL------ESITKLVVA 52

Query: 352 SNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFL 411
             ++  S+      ++L+ L++  N++       +  LVKL +L++  N +  + +   L
Sbjct: 53  GEKVA-SIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA---L 106

Query: 412 SNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDIS 471
            NL+NL  LYL +++++       I P                    L N  ++ SL++ 
Sbjct: 107 QNLTNLRELYLNEDNISD------ISP--------------------LANLTKMYSLNLG 140

Query: 472 -NSGISDTVPNWFWNQTYNLSFFNLSNNQIK-----GKLPNLSSRFHPYRPGIDISSNQF 525
            N  +SD   +   N T  L++  ++ +++K       L +L S        + ++ NQ 
Sbjct: 141 ANHNLSD--LSPLSNMT-GLNYLTVTESKVKDVTPIANLTDLYS--------LSLNYNQI 189

Query: 526 EG--PIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFD 583
           E   P+  L  +  +     N+ +  I+ + ++T  +L+ + + NN ++       +   
Sbjct: 190 EDISPLASLT-SLHYFTAYVNQIT-DITPVANMT--RLNSLKIGNNKITD--LSPLANLS 243

Query: 584 SLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGL 643
            L  L +  N       +++  L  L+ L++ +N+++    S   N SQL  + L  N L
Sbjct: 244 QLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQL 299

Query: 644 SGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS 693
             E    IG GL NL  L L  N      PL    L+ +   D ++  I 
Sbjct: 300 GNEDMEVIG-GLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (325), Expect = 1e-32
 Identities = 73/367 (19%), Positives = 139/367 (37%), Gaps = 50/367 (13%)

Query: 265 SNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNT 324
           ++L E I     +   +       + S+  L +A  +   I   +  + NL+ L L+ N 
Sbjct: 19  ADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQ 77

Query: 325 LRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINK 384
           +       + NL        L  L++ +N+IT  +      ++L+ L +  + ++     
Sbjct: 78  ITD--ISPLSNL------VKLTNLYIGTNKIT-DISALQNLTNLRELYLNEDNISDISP- 127

Query: 385 SVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPF----Q 440
            +  L K+ SL L  N     +S   LSN++ L  L + ++ +        + P      
Sbjct: 128 -LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD------VTPIANLTD 178

Query: 441 LSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQI 500
           L  ++L   +I       L +   +       + I+D  P    N T  L+   + NN+I
Sbjct: 179 LYSLSLNYNQI--EDISPLASLTSLHYFTAYVNQITDITP--VANMT-RLNSLKIGNNKI 233

Query: 501 K-----GKLPNLSSRFHPYRPGIDISSNQFEG--PIPQLPLNASFLNLSKNKFSGSISFL 553
                   L  L+         ++I +NQ      +  L      LN+  N+ S  IS L
Sbjct: 234 TDLSPLANLSQLTW--------LEIGTNQISDINAVKDLT-KLKMLNVGSNQIS-DISVL 283

Query: 554 CSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLS 613
            +++  +L+ + L+NN L     +      +L  L L+ N      P  +  L  + S  
Sbjct: 284 NNLS--QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339

Query: 614 LYNNRLT 620
             N  + 
Sbjct: 340 FANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (306), Expect = 4e-30
 Identities = 69/406 (16%), Positives = 148/406 (36%), Gaps = 67/406 (16%)

Query: 441 LSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQI 500
            + +      I   FP    +  + +   +  + ++D V      +  +++   ++  ++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKV 56

Query: 501 K-----GKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNA-SFLNLSKNKFSGSISFLC 554
                   L NL          ++++ NQ     P   L   + L +  NK +  IS L 
Sbjct: 57  ASIQGIEYLTNLEY--------LNLNGNQITDISPLSNLVKLTNLYIGTNKIT-DISALQ 107

Query: 555 SITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSL 614
           ++T   L  + L+ + +S       +    +  LNL  N         +  +  L  L++
Sbjct: 108 NLT--NLRELYLNEDNISD--ISPLANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTV 162

Query: 615 YNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPL 674
             +++     +   N + L  + L  N +    P      L +L   +   N+     P+
Sbjct: 163 TESKVKD--VTPIANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQITDITPV 217

Query: 675 QLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKS 734
              ++  +  L + +N I+ + P    N + +T      L + +N  + +          
Sbjct: 218 --ANMTRLNSLKIGNNKITDLSP--LANLSQLTW-----LEIGTNQISDI---------- 258

Query: 735 YFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQ 794
                              L  +K+L++ SN++       + +L+ L +L L+ N L  +
Sbjct: 259 --------------NAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNE 302

Query: 795 ITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLS 840
               IG L +L  L LS+N      P  L+ LS++   D +   + 
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  118 bits (297), Expect = 8e-29
 Identities = 71/385 (18%), Positives = 135/385 (35%), Gaps = 67/385 (17%)

Query: 467 SLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-----GKLPNLSSRFHPYRPGIDIS 521
           +L    + I+   P+             L    +       +L +++         + ++
Sbjct: 4   TLATLPAPINQIFPD---ADLAEGIRAVLQKASVTDVVTQEELESITK--------LVVA 52

Query: 522 SNQFEG--PIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCW 579
             +      I  L  N  +LNL+ N+ +  IS L ++   KL  + +  N ++       
Sbjct: 53  GEKVASIQGIEYLT-NLEYLNLNGNQIT-DISPLSNLV--KLTNLYIGTNKITD--ISAL 106

Query: 580 SQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG 639
               +L  L L  ++     P  +  L  + SL+L  N       S  +N + L  + + 
Sbjct: 107 QNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVT 163

Query: 640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKC 699
           ++ +    P      L +L  LSL  N+     PL    L ++       N I+ I P  
Sbjct: 164 ESKVKDVTPI---ANLTDLYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITP-- 216

Query: 700 FNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKI 759
             N T +       L + +N  T L    L                           +  
Sbjct: 217 VANMTRLNS-----LKIGNNKITDL--SPLANLSQ----------------------LTW 247

Query: 760 LDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSI 819
           L++ +N++       + DL  L  LN+  N ++      +  L  L+ L L+ NQ     
Sbjct: 248 LEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303

Query: 820 PSSLSQLSRLSVMDLSYNNLSGKIP 844
              +  L+ L+ + LS N+++   P
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 77.6 bits (192), Expect = 3e-15
 Identities = 52/271 (19%), Positives = 88/271 (32%), Gaps = 47/271 (17%)

Query: 585 LAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLS 644
            A L           PD+   L       L    +T            +T + +    ++
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 645 GEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFT 704
             I     E L NL  L+L  N+     PL   +L  +  L + +N I+ I      N T
Sbjct: 58  -SIQGI--EYLTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKITDISA--LQNLT 110

Query: 705 AMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSS 764
            +       L L  +  + +                           + L  +  L+L +
Sbjct: 111 NLRE-----LYLNEDNISDI------------------------SPLANLTKMYSLNLGA 141

Query: 765 NKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLS 824
           N         + ++ GL  L ++ + +   +TP I  L  L  L L+ NQ      S L+
Sbjct: 142 NHNLS-DLSPLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQI--EDISPLA 196

Query: 825 QLSRLSVMDLSYNNLSGKIPSG--TQLQSFS 853
            L+ L       N ++   P    T+L S  
Sbjct: 197 SLTSLHYFTAYVNQITDITPVANMTRLNSLK 227

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 3e-09
 Identities = 29/150 (19%), Positives = 67/150 (44%), Gaps = 15/150 (10%)

Query: 104 TISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSR 163
           T  + +  +  L  L +  N  +  S    + +LS+L++L +   + +      + +L++
Sbjct: 212 TDITPVANMTRLNSLKIGNNKITDLS---PLANLSQLTWLEIGTNQISDINA--VKDLTK 266

Query: 164 LQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISC 223
           L++L++G N +    ++  L++LS L  L L+ + L      M+V+  L +L  L+L   
Sbjct: 267 LKMLNVGSNQI---SDISVLNNLSQLNSLFLNNNQLGNED--MEVIGGLTNLTTLFLSQN 321

Query: 224 DLPPTIPSSDLYLNSSTSLEVIVILGNNLT 253
            +    P + L     + ++        + 
Sbjct: 322 HITDIRPLASL-----SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.4 bits (137), Expect = 2e-08
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 107 SSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQV 166
           +++  L  L  L++  N  S       + +LS+L+ L L+N +        +G L+ L  
Sbjct: 259 NAVKDLTKLKMLNVGSNQISD---ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 167 LDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSK 201
           L +  N +    ++  L+ LS +   D +   + K
Sbjct: 316 LFLSQNHI---TDIRPLASLSKMDSADFANQVIKK 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  134 bits (340), Expect = 1e-33
 Identities = 105/523 (20%), Positives = 180/523 (34%), Gaps = 98/523 (18%)

Query: 180 LEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSS 239
            E L H S+L  + +   N+              S    Y    +     P  +      
Sbjct: 14  QEPLRHSSNLTEMPVEAENVK-------------SKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 240 TSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLAS 299
               +   L     +                + L +  L  S+PE   H   L +L  + 
Sbjct: 61  AVSRLRDCLDRQAHE----------------LELNNLGLS-SLPELPPH---LESLVASC 100

Query: 300 NQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSL 359
           N   E+P+   ++ +L     +       LS++   L          +L + +N++   L
Sbjct: 101 NSLTELPELPQSLKSLLVDNNNLK----ALSDLPPLLE---------YLGVSNNQLE-KL 146

Query: 360 PNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTI 419
           P     S LK + + NN L    +        LE +   NN L  +     L NL  LT 
Sbjct: 147 PELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELPE---LQNLPFLTA 199

Query: 420 LYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTV 479
           +Y  +NSL          P  L  +  G+  +       L+N   + ++   N+ +  T+
Sbjct: 200 IYADNNSLKKLPDL----PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TL 252

Query: 480 PNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFL 539
           P+       +L   N+ +N +   LP L          +D+S N F G + +LP N  +L
Sbjct: 253 PDLP----PSLEALNVRDNYLT-DLPELPQSLT----FLDVSENIFSG-LSELPPNLYYL 302

Query: 540 NLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKI 599
           N S N+         S+       +++SNN L   LP        L  L  + N    ++
Sbjct: 303 NASSNEIRSLCDLPPSLE-----ELNVSNNKLI-ELPALPP---RLERLIASFNH-LAEV 352

Query: 600 PDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLV 659
           P+      NL+ L +  N L  E P    +     + DL  N    E+P        NL 
Sbjct: 353 PELPQ---NLKQLHVEYNPLR-EFPDIPES-----VEDLRMNSHLAEVPELPQ----NLK 399

Query: 660 VLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNN 702
            L +++N      P     +   + L ++S  +          
Sbjct: 400 QLHVETNPLR-EFPDIPESV---EDLRMNSERVVDPYEFAHET 438

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  133 bits (338), Expect = 2e-33
 Identities = 95/584 (16%), Positives = 176/584 (30%), Gaps = 138/584 (23%)

Query: 110 LILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDI 169
           +    L       +N +   +P    ++   +    + +E+    P   G    + V  +
Sbjct: 8   VSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 170 GFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTI 229
                                 L+L+   LS        L  L       L    LP   
Sbjct: 66  RDCL------------DRQAHELELNNLGLSSLPELPPHLESLV-ASCNSLTE--LPELP 110

Query: 230 PSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHM 289
                      SL+ +++  NNL       L ++   L  L  + +NQL+  +PE   + 
Sbjct: 111 Q----------SLKSLLVDNNNLKA-----LSDLPPLLEYL-GVSNNQLE-KLPE-LQNS 152

Query: 290 PSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLF 349
             L  + + +N  +++P       +L+ +    N L                        
Sbjct: 153 SFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNNQLE----------------------- 186

Query: 350 LDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEA 409
                    LP       L  +   NN L    +      + LES+   NN L  +    
Sbjct: 187 --------ELPELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILEELPE-- 232

Query: 410 FLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLD 469
            L NL  LT +Y  +N L                            P    +   +   D
Sbjct: 233 -LQNLPFLTTIYADNNLLK-------------------------TLPDLPPSLEALNVRD 266

Query: 470 ISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPI 529
              + + +   +        L       + +    PNL          ++ SSN+    +
Sbjct: 267 NYLTDLPELPQSL-----TFLDVSENIFSGLSELPPNLYY--------LNASSNEIRS-L 312

Query: 530 PQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILN 589
             LP +   LN+S NK    +  L      +L+ +  S N L+  +P       +L  L+
Sbjct: 313 CDLPPSLEELNVSNNKLI-ELPALPP----RLERLIASFNHLA-EVP---ELPQNLKQLH 363

Query: 590 LANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPT 649
           +  N    + PD    +++L+     N+ L  E+P    N   L  + +  N L  E P 
Sbjct: 364 VEYNP-LREFPDIPESVEDLRM----NSHLA-EVPELPQN---LKQLHVETNPLR-EFPD 413

Query: 650 WIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS 693
                  ++  L + S +              ++      ++  
Sbjct: 414 IPE----SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  123 bits (311), Expect = 6e-30
 Identities = 90/562 (16%), Positives = 174/562 (30%), Gaps = 132/562 (23%)

Query: 291 SLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSD-------GCTKT 343
            L      S+   E+P    N+ +      +++    +         +        C   
Sbjct: 12  FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71

Query: 344 SLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLR 403
               L L++  ++ SLP       L+ L  + N L   + +    L  L     +  +L 
Sbjct: 72  QAHELELNNLGLS-SLPEL--PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 127

Query: 404 GVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQN 463
            +           L  L +++N L        +P                      +N +
Sbjct: 128 DLP--------PLLEYLGVSNNQLEK------LPEL--------------------QNSS 153

Query: 464 QILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-----GKLPNLSSRFHPYRPGI 518
            +  +D+ N+ +   +P+       +L F    NNQ++       LP L++        I
Sbjct: 154 FLKIIDVDNNSLK-KLPDLP----PSLEFIAAGNNQLEELPELQNLPFLTA--------I 200

Query: 519 DISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDC 578
              +N  +  +P LPL+   +    N     +  L ++    L  I   NNLL   LPD 
Sbjct: 201 YADNNSLKK-LPDLPLSLESIVAGNNILE-ELPELQNLP--FLTTIYADNNLLK-TLPD- 254

Query: 579 WSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638
                SL  LN+ +N     +P+    L  L       + L+   P+       L  ++ 
Sbjct: 255 --LPPSLEALNVRDNY-LTDLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNA 304

Query: 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPK 698
             N +   +     +   +L  L++ +NK    +P     L   + L  S N+++  +P+
Sbjct: 305 SSNEIR-SLC----DLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPE 354

Query: 699 CFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVK 758
              N           L +  N                                       
Sbjct: 355 LPQNLK--------QLHVEYNPLREFPD----------------------------IPES 378

Query: 759 ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGS 818
           + DL  N    EVPE       L  L++  N L  +       ++    L ++  +    
Sbjct: 379 VEDLRMNSHLAEVPELP---QNLKQLHVETNPLR-EFPDIPESVED---LRMNSERVVDP 431

Query: 819 IPSSLSQLSRLSVMDLSYNNLS 840
              +     +L      +++  
Sbjct: 432 YEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (264), Expect = 5e-24
 Identities = 87/465 (18%), Positives = 158/465 (33%), Gaps = 103/465 (22%)

Query: 382 INKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQL 441
           IN        L+    H+++L  +  E    N+ + T  Y A +           PP   
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVE--AENVKSKTEYYNAWSEWERN-----APPGNG 55

Query: 442 SQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK 501
            Q  +   ++     +          L+++N G+S ++P        +L     S N + 
Sbjct: 56  EQREMAVSRLRDCLDRQAH------ELELNNLGLS-SLPELPP----HLESLVASCNSLT 104

Query: 502 ------GKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCS 555
                   L +L           + +       +  LP    +L +S N+    +  L +
Sbjct: 105 ELPELPQSLKSLLV--------DNNNLKA----LSDLPPLLEYLGVSNNQLE-KLPELQN 151

Query: 556 ITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLY 615
            +   L  ID+ NN L  +LPD      SL  +   NN    +    +  L  L ++   
Sbjct: 152 SS--FLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQL--EELPELQNLPFLTAIYAD 203

Query: 616 NNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQ 675
           NN L  +LP    +   L  +  G N L  E+P    + L  L  +   +N    ++P  
Sbjct: 204 NNSLK-KLPDLPLS---LESIVAGNNILE-ELPEL--QNLPFLTTIYADNNLLK-TLPDL 255

Query: 676 LCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSY 735
              L   + L++  N ++  +P+   + T         L +  N ++ L           
Sbjct: 256 PPSL---EALNVRDNYLTD-LPELPQSLT--------FLDVSENIFSGL----------- 292

Query: 736 FDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQI 795
                                +  L+ SSN++   + +       L  LN+S N L  ++
Sbjct: 293 ---------------SELPPNLYYLNASSNEI-RSLCDL---PPSLEELNVSNNKLI-EL 332

Query: 796 TPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLS 840
                +L+    L  S N     +P     L +L    + YN L 
Sbjct: 333 PALPPRLER---LIASFNH-LAEVPELPQNLKQL---HVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 81.2 bits (201), Expect = 4e-16
 Identities = 52/332 (15%), Positives = 106/332 (31%), Gaps = 68/332 (20%)

Query: 518 IDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPD 577
              + +++E   P        + +S+         L      +   ++L+N  LS  LP+
Sbjct: 39  YYNAWSEWERNAPPGNGEQREMAVSR---------LRDCLDRQAHELELNNLGLS-SLPE 88

Query: 578 CWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMD 637
                  L  L  + NS   ++P+    LK+L   +     L+   P        L  + 
Sbjct: 89  LPPH---LESLVASCNSL-TELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLG 137

Query: 638 LGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIP 697
           +  N L  ++P    +    L ++ + +N     +P     L   + +   +N +  +  
Sbjct: 138 VSNNQLE-KLPEL--QNSSFLKIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQLEELPE 190

Query: 698 KCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLV 757
               N   +T      +   +N    L                                +
Sbjct: 191 --LQNLPFLTA-----IYADNNSLKKL--------------------------PDLPLSL 217

Query: 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG 817
           + +   +N L  E   E+ +L  L  +    N L   +      L++L+  D        
Sbjct: 218 ESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLT---- 270

Query: 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQL 849
            +P     L+ L V +  ++ LS   P+   L
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPPNLYYL 302

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.9 bits (182), Expect = 8e-14
 Identities = 50/321 (15%), Positives = 93/321 (28%), Gaps = 72/321 (22%)

Query: 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIG-------------F 605
              + +  S+NL    +P       S      A + +    P   G              
Sbjct: 12  FLQEPLRHSSNLTE--MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 606 LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKS 665
            +    L L N  L+  LP    +   L  +    N L+ E+P      L +L+V +   
Sbjct: 70  DRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQS-LKSLLVDNNNL 123

Query: 666 NKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLA 725
              +   P        ++ L +S+N +  +      N + +       + + +N    L 
Sbjct: 124 KALSDLPP-------LLEYLGVSNNQLEKLPE--LQNSSFLKI-----IDVDNNSLKKLP 169

Query: 726 YDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALN 785
                                          ++ +   +N+L  E   E+ +L  L A+ 
Sbjct: 170 --------------------------DLPPSLEFIAAGNNQL--EELPELQNLPFLTAIY 201

Query: 786 LSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845
              N     +        SL+ +    N         L  L  L+ +    N L      
Sbjct: 202 ADNN----SLKKLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKTLPDL 255

Query: 846 GTQLQSFSTSMYAGNELCGLP 866
              L++ +      N L  LP
Sbjct: 256 PPSLEALNVR---DNYLTDLP 273

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.3 bits (178), Expect = 2e-13
 Identities = 43/262 (16%), Positives = 82/262 (31%), Gaps = 35/262 (13%)

Query: 599 IPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNL 658
           I         LQ    +++ LT E+P    N    T      +      P   GE    +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGE-QREM 60

Query: 659 VVLSLKSNKFNGSIPLQLCH---------LANVQILDLSSNNISGIIPKCFNNFTAMTHE 709
            V  L+      +  L+L +           +++ L  S N+++  +P+   +       
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLK----- 114

Query: 710 KGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGG 769
              +L + +N   +L+               L               +KI+D+ +N L  
Sbjct: 115 ---SLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSF----LKIIDVDNNSLK- 166

Query: 770 EVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRL 829
           ++P+       L  +    N L     P++  L  L  +    N     +P     L  +
Sbjct: 167 KLPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESI 220

Query: 830 SVMDLSYNNLSGKIPSGTQLQS 851
                  N L  ++P    L  
Sbjct: 221 ---VAGNNILE-ELPELQNLPF 238

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (339), Expect = 2e-33
 Identities = 66/470 (14%), Positives = 146/470 (31%), Gaps = 35/470 (7%)

Query: 232 SDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPS 291
            ++  N +   ++  +  ++L       L   + N+ EL +L  N L             
Sbjct: 3   HEIKQNGN-RYKIEKVTDSSLK-QALASLRQSAWNVKEL-DLSGNPLSQISAADLAPFTK 59

Query: 292 LNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLD 351
           L  L L+SN   E    L ++  L++L L+ N         +Q L  G    S+  L   
Sbjct: 60  LELLNLSSNVLYETL-DLESLSTLRTLDLNNN--------YVQELLVG---PSIETLHAA 107

Query: 352 SNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFL 411
           +N I+  +         K + +ANN++    +   G   +++ L L  N +  V      
Sbjct: 108 NNNIS-RVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 412 SNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDIS 471
           ++   L  L L  N +  +     +   +L  ++L S K+        ++   +  + + 
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 472 NSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQ 531
           N+ +   +         NL  F+L  N        L   F   +    ++    +    Q
Sbjct: 223 NNKLV-LIEKALRFSQ-NLEHFDLRGNGF--HCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 532 LPLNASFLNLSKNKF-------SGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDS 584
                +   L            +     L ++   +   +    +    RL         
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQAR 337

Query: 585 LAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLS 644
              ++     +   I       +   +L      L  ++ +     ++L         + 
Sbjct: 338 QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ--QAVG 395

Query: 645 GEIPTWIGEGLVNLVVLSLKSNKFN-GSIPLQLCHLANVQILDLSSNNIS 693
                   E    L +L     ++    +  Q      ++  D+  +  +
Sbjct: 396 QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  130 bits (329), Expect = 4e-32
 Identities = 61/401 (15%), Positives = 128/401 (31%), Gaps = 31/401 (7%)

Query: 129 SIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSS 188
           +I E   + ++     ++++     +     +   ++ LD+  N  +S  +   L+  + 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTK 59

Query: 189 LIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVIL 248
           L  L+LS + L +  +    L  L +L+ L L +  +          L    S+E +   
Sbjct: 60  LELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQ--------ELLVGPSIETLHAA 107

Query: 249 GNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKS 308
            NN++  +             +  L +N++        G    +  L L  N+   +  +
Sbjct: 108 NNNIS-RVSCSRG---QGKKNI-YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 309 --LGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFS 366
               +   L+ L L YN         I ++        L  L L SN++    P F   +
Sbjct: 163 ELAASSDTLEHLNLQYNF--------IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA 214

Query: 367 SLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNS 426
            +  +S+ NN+L   I K++     LE   L  N         F S    +  +      
Sbjct: 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

Query: 427 -LTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWN 485
            LT +   +   P            +   F   L    +     +S  G           
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333

Query: 486 QTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFE 526
                   +    Q +  + +  +     +  ++      +
Sbjct: 334 NQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  120 bits (302), Expect = 1e-28
 Identities = 69/521 (13%), Positives = 151/521 (28%), Gaps = 98/521 (18%)

Query: 329 LSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVG 387
           + EI QN +            +  + +  +L +      ++K L ++ N L+      + 
Sbjct: 2   IHEIKQNGN------RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA 55

Query: 388 QLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLG 447
              KLE L L +N L   +    L +LS L  L L +N +      + +    +  ++  
Sbjct: 56  PFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAA 107

Query: 448 SCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNL 507
           +  I        +      ++ ++N+ I+         ++  + + +L  N+I       
Sbjct: 108 NNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEID------ 157

Query: 508 SSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLS 567
                       ++  +       L      LNL  N     +         KL  +DLS
Sbjct: 158 -----------TVNFAELAASSDTL----EHLNLQYNFIY-DVKGQVVFA--KLKTLDLS 199

Query: 568 NNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRL-TGELPSF 626
           +N L+  +   +     +  ++L NN     I  ++ F +NL+   L  N    G L  F
Sbjct: 200 SNKLA-FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

Query: 627 FTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILD 686
           F+   ++                            ++                    +  
Sbjct: 258 FSKNQRV---------------------------QTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 687 LSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGS 746
             +     +     +   A+  ++ + L+   +    L  +     +             
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR------------- 337

Query: 747 QYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLD 806
                      + +D    +    + +  +     I L   +  L  Q++        LD
Sbjct: 338 ----------QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

Query: 807 FLDLSRNQ--FFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845
                              S L  L  +   Y  +  +  S
Sbjct: 388 GTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQS 428

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 96.1 bits (239), Expect = 8e-21
 Identities = 54/304 (17%), Positives = 103/304 (33%), Gaps = 35/304 (11%)

Query: 575 LPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLT 634
           + +     +   I  + ++S    +        N++ L L  N L+    +     ++L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 635 LMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISG 694
           L++L  N L  E      E L  L  L L +N        +L    +++ L  ++NNIS 
Sbjct: 62  LLNLSSNVLY-ETLDL--ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 695 IIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTW---------KG 745
           +                 N+ L +N  T L                + +           
Sbjct: 114 VSCSRGQGKK--------NIYLANNKITMLRDLDEGCRSR------VQYLDLKLNEIDTV 159

Query: 746 SQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSL 805
           +  E  ++   ++ L+L  N +  +V  +++  A L  L+LS N L   + P+      +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFI-YDVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 806 DFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNELCGL 865
            ++ L  N+    I  +L     L   DL  N            ++      A   +  L
Sbjct: 217 TWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

Query: 866 PLPN 869
              N
Sbjct: 276 TGQN 279

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 94.5 bits (235), Expect = 3e-20
 Identities = 55/401 (13%), Positives = 110/401 (27%), Gaps = 56/401 (13%)

Query: 107 SSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQV 166
             LL+   +  L  + NN S   +            + L+N +      L  G  SR+Q 
Sbjct: 93  QELLVGPSIETLHAANNNIS--RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 167 LDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLP 226
           LD+  N + +    E  +   +L +L+L ++ +      +        LK L L      
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV----FAKLKTLDLS----- 199

Query: 227 PTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAF 286
                                  N L   + P   +  + +  + +L +N+L   I +A 
Sbjct: 200 ----------------------SNKLA-FMGPEFQSA-AGVTWI-SLRNNKLV-LIEKAL 233

Query: 287 GHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLA 346
               +L    L  N F           N +  T++  T++    +  +        T   
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC------TVPT 287

Query: 347 WLFLDSNEITGSLPNFGGFSSLKRLSIANNRLN-------GTINKSVGQLVKLESLFLHN 399
                +         F     L  L    + L          +        +   +    
Sbjct: 288 LGHYGAYCCEDLPAPF--ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 400 NSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWL 459
              R VI +           L     +L  + S+      +L    L             
Sbjct: 346 EQYRTVIDQVT-LRKQAKITLEQKKKALDEQVSNGRRAHAEL-DGTLQQAVGQIELQHAT 403

Query: 460 RNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQI 500
             Q+ +  L        +        Q   +  +++  ++ 
Sbjct: 404 EEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 81.4 bits (201), Expect = 4e-16
 Identities = 44/334 (13%), Positives = 91/334 (27%), Gaps = 26/334 (7%)

Query: 101 LKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGN 160
           +             + YLDL  N     +  E   S   L +L L        +  Q+  
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-V 189

Query: 161 LSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYL 220
            ++L+ LD+  N L            + + ++ L  + L         L    +L+   L
Sbjct: 190 FAKLKTLDLSSNKLAFMG--PEFQSAAGVTWISLRNNKLVLIEK---ALRFSQNLEHFDL 244

Query: 221 ----ISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSN 276
                 C       S +  + +     V  + G N  +   P L +  +   E  +L + 
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE--DLPAP 302

Query: 277 QLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNL 336
                I            L    ++   +     N    + +       R  + ++    
Sbjct: 303 FADRLI---ALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 337 SDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTIN--KSVGQLVKLES 394
                  +   L      +   + N  G  +   L     +  G I    +  +   L+ 
Sbjct: 360 Q------AKITLEQKKKALDEQVSN--GRRAHAELDGTLQQAVGQIELQHATEEQSPLQL 411

Query: 395 LFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
           L         +  E      + +    +  +  T
Sbjct: 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.9 bits (132), Expect = 8e-08
 Identities = 32/292 (10%), Positives = 64/292 (21%), Gaps = 36/292 (12%)

Query: 104 TISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSR 163
            I  +L   Q+L + DL GN F   ++ +F     ++  +                  + 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT--VKKLTGQNEEECTV 285

Query: 164 LQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISC 223
             +   G                  LI L      L                        
Sbjct: 286 PTLGHYGAYCCEDLPA----PFADRLIALKRKEHALLSGQG------------------- 322

Query: 224 DLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIP 283
                +               I  L      ++   +       + L       L   + 
Sbjct: 323 SETERLECERENQA---RQREIDALKEQYR-TVIDQVTLRKQAKITL-EQKKKALDEQVS 377

Query: 284 EAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT 343
                   L+     +    E+  +      L+ L            E     +      
Sbjct: 378 NGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQN-----N 432

Query: 344 SLAWLFLDSNEITGSLPNFGGFSSLK-RLSIANNRLNGTINKSVGQLVKLES 394
           ++    +  ++ T           L     +A    N T+ + V +   L S
Sbjct: 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLAS 484

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 28/177 (15%), Positives = 49/177 (27%), Gaps = 59/177 (33%)

Query: 671 SIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLK 730
           +I     +    +I  ++ +++   +     +                            
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWN------------------------- 35

Query: 731 TTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNT 790
                                     VK LDLS N L      ++     L  LNLS N 
Sbjct: 36  --------------------------VKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 791 LTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGT 847
           L    T  +  L +L  LDL+ N         L     +  +  + NN+S ++    
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR 118

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  128 bits (324), Expect = 9e-33
 Identities = 56/328 (17%), Positives = 112/328 (34%), Gaps = 29/328 (8%)

Query: 129 SIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSS 188
           +I E   + ++     ++++     +     +   ++ LD+  N  +S  +   L+  + 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTK 59

Query: 189 LIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVIL 248
           L  L+LS + L +  +    L  L +L+ L L +  +          L    S+E +   
Sbjct: 60  LELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQ--------ELLVGPSIETLHAA 107

Query: 249 GNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKS 308
            NN++  +             +  L +N++        G    +  L L  N+   +  +
Sbjct: 108 NNNIS-RVSCSRG---QGKKNI-YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 309 --LGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFS 366
               +   L+ L L YN         I ++        L  L L SN++    P F   +
Sbjct: 163 ELAASSDTLEHLNLQYNF--------IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA 214

Query: 367 SLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNS 426
            +  +S+ NN+L   I K++     LE   L  N         F S    +  +      
Sbjct: 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

Query: 427 LTLEFSHDWIPPFQLSQVNLGSCKIGPR 454
                + +      L       C+  P 
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  113 bits (284), Expect = 2e-27
 Identities = 50/270 (18%), Positives = 99/270 (36%), Gaps = 22/270 (8%)

Query: 232 SDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPS 291
            ++  N +   ++  +  ++L       L   + N+ EL +L  N L             
Sbjct: 3   HEIKQNGN-RYKIEKVTDSSLK-QALASLRQSAWNVKEL-DLSGNPLSQISAADLAPFTK 59

Query: 292 LNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLD 351
           L  L L+SN   E    L ++  L++L L+ N         +Q L  G    S+  L   
Sbjct: 60  LELLNLSSNVLYETL-DLESLSTLRTLDLNNN--------YVQELLVG---PSIETLHAA 107

Query: 352 SNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFL 411
           +N I+  +         K + +ANN++    +   G   +++ L L  N +  V      
Sbjct: 108 NNNIS-RVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 412 SNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDIS 471
           ++   L  L L  N +  +     +   +L  ++L S K+        ++   +  + + 
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQVVFA-KLKTLDLSSNKL-AFMGPEFQSAAGVTWISLR 222

Query: 472 NSGISDTVPNWFWNQTYNLSFFNLSNNQIK 501
           N+ +   +         NL  F+L  N   
Sbjct: 223 NNKLV-LIEKALRFSQ-NLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  110 bits (277), Expect = 1e-26
 Identities = 49/311 (15%), Positives = 105/311 (33%), Gaps = 41/311 (13%)

Query: 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR 618
           ++     ++++ L   L        ++  L+L+ N         +     L+ L+L +N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 619 LTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCH 678
           L  E      + S L  +DL  N +  E+         ++  L   +N  +  +      
Sbjct: 70  LY-ETLD-LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNIS-RVSCSR-- 118

Query: 679 LANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDK 738
               + + L++N I+ +        + + +     L L  N   ++ +  L         
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQY-----LDLKLNEIDTVNFAEL--------- 164

Query: 739 AVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK 798
                        ++   ++ L+L  N +  +V  +++  A L  L+LS N L   + P+
Sbjct: 165 ------------AASSDTLEHLNLQYNFI-YDVKGQVV-FAKLKTLDLSSNKLA-FMGPE 209

Query: 799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYA 858
                 + ++ L  N+    I  +L     L   DL  N            ++      A
Sbjct: 210 FQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 859 GNELCGLPLPN 869
              +  L   N
Sbjct: 269 KQTVKKLTGQN 279

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.4 bits (243), Expect = 4e-22
 Identities = 54/359 (15%), Positives = 108/359 (30%), Gaps = 83/359 (23%)

Query: 329 LSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVG 387
           + EI QN +            +  + +  +L +      ++K L ++ N L+      + 
Sbjct: 2   IHEIKQNGN------RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA 55

Query: 388 QLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLG 447
              KLE L L +N L   +    L +LS L  L L +N +      + +    +  ++  
Sbjct: 56  PFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAA 107

Query: 448 SCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK------ 501
           +              N I  +  S                       L+NN+I       
Sbjct: 108 N--------------NNISRVSCSRG--------------QGKKNIYLANNKITMLRDLD 139

Query: 502 -GKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHK 560
            G    +          +D+  N+    I  +       +                    
Sbjct: 140 EGCRSRVQY--------LDLKLNE----IDTVNFAELAASSDT----------------- 170

Query: 561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT 620
           L++++L  N +   +      F  L  L+L++N     +         +  +SL NN+L 
Sbjct: 171 LEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV 227

Query: 621 GELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHL 679
             +         L   DL  NG               +  ++ ++ K       + C +
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 53/299 (17%), Positives = 97/299 (32%), Gaps = 51/299 (17%)

Query: 406 ISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQI 465
           I E    N +   I  + D+SL                                 +   +
Sbjct: 2   IHEIKQ-NGNRYKIEKVTDSSLKQ------ALASLRQ------------------SAWNV 36

Query: 466 LSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-----GKLPNLSSRFHPYRPGIDI 520
             LD+S + +S          T  L   NLS+N +        L  L +        +D+
Sbjct: 37  KELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRT--------LDL 87

Query: 521 SSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWS 580
           ++N  +  +   P +   L+ + N     IS +    G     I L+NN ++        
Sbjct: 88  NNNYVQE-LLVGP-SIETLHAANNN----ISRVSCSRGQGKKNIYLANNKITMLRDLDEG 141

Query: 581 QFDSLAILNLANNSFFG-KIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG 639
               +  L+L  N        +       L+ L+L  N +  ++       ++L  +DL 
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVF-AKLKTLDLS 199

Query: 640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPK 698
            N L+  +          +  +SL++NK    I   L    N++  DL  N       +
Sbjct: 200 SNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 39/220 (17%), Positives = 73/220 (33%), Gaps = 39/220 (17%)

Query: 107 SSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQV 166
             LL+   +  L  + NN S   +            + L+N +      L  G  SR+Q 
Sbjct: 93  QELLVGPSIETLHAANNNIS--RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 167 LDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLP 226
           LD+  N + +    E  +   +L +L+L ++ +      +        LK L L      
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV----FAKLKTLDL------ 198

Query: 227 PTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAF 286
                                  N L   + P   +  + +  + +L +N+L   I +A 
Sbjct: 199 ---------------------SSNKLA-FMGPEFQSA-AGVTWI-SLRNNKLV-LIEKAL 233

Query: 287 GHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLR 326
               +L    L  N F           N +  T++  T++
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 27/177 (15%), Positives = 49/177 (27%), Gaps = 59/177 (33%)

Query: 671 SIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLK 730
           +I     +    +I  ++ +++   +     +          N+                
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAW--------NVK--------------- 37

Query: 731 TTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNT 790
                                        LDLS N L      ++     L  LNLS N 
Sbjct: 38  ----------------------------ELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 791 LTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGT 847
           L    T  +  L +L  LDL+ N         L     +  +  + NN+S ++    
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR 118

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 772 PEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSV 831
            E   +        ++ ++L   +        ++  LDLS N       + L+  ++L +
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 832 MDLSYNNLSGKIPSGTQLQS 851
           ++LS N L  +      L +
Sbjct: 63  LNLSSNVLY-ETLDLESLST 81

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  127 bits (320), Expect = 8e-31
 Identities = 91/545 (16%), Positives = 168/545 (30%), Gaps = 89/545 (16%)

Query: 293 NTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDS 352
             +  + N    +PK L        L +S N +    +  I +L      + L  L +  
Sbjct: 3   FLVDRSKNGLIHVPKDLSQ--KTTILNISQNYISELWTSDILSL------SKLRILIISH 54

Query: 353 NEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAF 410
           N I   L    F     L+ L +++N+L      S    V L+ L L  N+   +     
Sbjct: 55  NRIQ-YLDISVFKFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAFDALPICKE 110

Query: 411 LSNLSNLTILYLADNSLT-LEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRN-QNQILSL 468
             N+S L  L L+   L                 + LG        P+ L++   + L +
Sbjct: 111 FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170

Query: 469 DISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRF----------HPYRPGI 518
               +     + +       NL   N+       K     S            +     I
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230

Query: 519 DISSNQFEGPIPQL-PLNASFLNLSKNKFSGSISFLCSITGH----KLDYIDLSNNLLSG 573
           + + N F   +  +      + ++S  K  G + F            L    + +++   
Sbjct: 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF 290

Query: 574 RLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQL 633
                +  F ++ I N   +            +     L   NN LT  +     + ++L
Sbjct: 291 PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350

Query: 634 TLMDLGKNGLSGEIPTWIG--EGLVNLVVLSLKSNKFNGSIPLQLC-HLANVQILDLSSN 690
             + L  N L  E+         + +L  L +  N  +       C    ++  L++SSN
Sbjct: 351 ETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 691 NISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEY 750
            ++  I +C                                                   
Sbjct: 410 ILTDTIFRCL-------------------------------------------------- 419

Query: 751 QSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDL 810
                 +K+LDL SNK+   +P++++ L  L  LN++ N L         +L SL  + L
Sbjct: 420 ---PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475

Query: 811 SRNQF 815
             N +
Sbjct: 476 HTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  117 bits (295), Expect = 9e-28
 Identities = 86/470 (18%), Positives = 170/470 (36%), Gaps = 49/470 (10%)

Query: 268 VELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKS-LGNMCNLKSLTLSYNTLR 326
             ++N+  N +          +  L  L ++ N+ + +  S       L+ L LS+N L 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL- 81

Query: 327 GDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFS---SLKRLSIANNRLNGTIN 383
                    +S   T  +L  L L  N    +LP    F     LK L ++   L  +  
Sbjct: 82  -------VKISCHPT-VNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSV 132

Query: 384 KSVGQLVKLESLFLHNNSLRGVISEAFLSNL--SNLTILYLADNSLT--LEFSHDWIPPF 439
             +  L   + L +   +         L +    +L I++  +      L+ S   +   
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 440 QLSQVNL----GSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTY--NLSFF 493
           +LS +        C         L+   ++ +L ++N   +           +   + +F
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 494 NLSNNQIKGKL----PNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKF--- 546
           ++SN +++G+L     + S           + S+ F       P +  +   S       
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-----GFPQSYIYEIFSNMNIKNF 307

Query: 547 ----SGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDS 602
               +  +  LC        ++D SNNLL+  + +       L  L L  N    ++   
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL-KELSKI 366

Query: 603 IGF---LKNLQSLSLYNNRLTGELPS-FFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNL 658
                 +K+LQ L +  N ++ +      +    L  +++  N L+  I   +      +
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRI 423

Query: 659 VVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTH 708
            VL L SNK   SIP Q+  L  +Q L+++SN +  +    F+  T++  
Sbjct: 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  102 bits (256), Expect = 8e-23
 Identities = 102/538 (18%), Positives = 190/538 (35%), Gaps = 74/538 (13%)

Query: 116 TYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLI 175
             +D S N      +P+      K + L +S    +      + +LS+L++L I  N + 
Sbjct: 3   FLVDRSKNGLI--HVPK--DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ 58

Query: 176 SGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLY 235
             +          L YLDLS + L K S          +LK L L        +P     
Sbjct: 59  YLDI-SVFKFNQELEYLDLSHNKLVKIS-----CHPTVNLKHLDLSFNAFD-ALPICKE- 110

Query: 236 LNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFG--HMPSLN 293
             + + L+ + +   +L            +    L+ LG    +   PE     +  SL+
Sbjct: 111 FGNMSQLKFLGLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169

Query: 294 TLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDS 352
            +F  + +F  I   S+  + NL+   +         S  +  L+   T   L+ L L++
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 353 NEITG----SLPNFGGFSSLKRLSIANNRLNG-----TINKSVGQLVKLESLFLHNNSLR 403
            E T      +      +++   SI+N +L G       + S   L  L    + ++   
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 404 GVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQN 463
              S  +    SN+ I     +   +                     +    P  +   +
Sbjct: 290 FPQSYIYE-IFSNMNIKNFTVSGTRM---------------------VHMLCPSKI---S 324

Query: 464 QILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSN 523
             L LD SN+ ++DTV     + T  L    L  NQ+K +L  ++      +        
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLK-ELSKIAEMTTQMK-------- 374

Query: 524 QFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFD 583
                      +   L++S+N  S             L  +++S+N+L+  +  C     
Sbjct: 375 -----------SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP-- 421

Query: 584 SLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKN 641
            + +L+L +N     IP  +  L+ LQ L++ +N+L       F   + L  + L  N
Sbjct: 422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  101 bits (253), Expect = 2e-22
 Identities = 69/356 (19%), Positives = 118/356 (33%), Gaps = 49/356 (13%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGF 171
             +L +LDLS N F    I +  G++S+L +LGLS T       L + +L+  +VL +  
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 172 NSLISGENLEWLSHL---------------------SSLIYLDLSFSNLSK--------- 201
            +    E+ E L                        S     +L  SN+           
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 202 FSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLF 261
           F + +  L     L  L L + +         L L   T++    I    L   +    F
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268

Query: 262 NVSSNLVE---LINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPK-SLGNMCNLKS 317
           + S   ++   +  + S+         +    ++N      +  R +       +     
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328

Query: 318 LTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN----FGGFSSLKRLSI 373
           L  S N L   + E   +L      T L  L L  N++   L           SL++L I
Sbjct: 329 LDFSNNLLTDTVFENCGHL------TELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDI 381

Query: 374 ANNRLNGTINKSV-GQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
           + N ++    K        L SL + +N L   I          + +L L  N + 
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 96.9 bits (241), Expect = 5e-21
 Identities = 81/489 (16%), Positives = 156/489 (31%), Gaps = 81/489 (16%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAG-PIPLQLGNLSRLQVLDIG 170
            Q L YLDLS N      I         L +L LS   F   PI  + GN+S+L+ L + 
Sbjct: 68  NQELEYLDLSHNKL--VKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
              L    ++  ++HL+    L +      +  +        + L+     S  +     
Sbjct: 124 TTHLEKS-SVLPIAHLNISKVLLVLGETYGEKED-------PEGLQDFNTESLHIVFPTN 175

Query: 231 SSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMP 290
               ++   +   V  +  +N+   +     +   +++  +                   
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN----------L 225

Query: 291 SLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFL 350
           +LN +    N F  I + +     +   ++S   L+G L     + S   +  +L+   +
Sbjct: 226 TLNNIETTWNSFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSG-TSLKALSIHQV 283

Query: 351 DSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEA 409
            S+         +  FS++   +   +           ++     L   NN L   + E 
Sbjct: 284 VSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFEN 343

Query: 410 FLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLD 469
              +L+ L  L L  N L                  L       +  +       +  LD
Sbjct: 344 C-GHLTELETLILQMNQLK----------------EL------SKIAEMTTQMKSLQQLD 380

Query: 470 ISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPI 529
           IS + +S        + T +L   N+S+N +                         +   
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT------------------------DTIF 416

Query: 530 PQLPLNASFLNLSKNKFSGSISFLCSITGH--KLDYIDLSNNLLSGRLPDCW-SQFDSLA 586
             LP     L+L  NK    I  +         L  +++++N L   +PD    +  SL 
Sbjct: 417 RCLPPRIKVLDLHSNK----IKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQ 471

Query: 587 ILNLANNSF 595
            + L  N +
Sbjct: 472 KIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.8 bits (207), Expect = 8e-17
 Identities = 58/341 (17%), Positives = 132/341 (38%), Gaps = 30/341 (8%)

Query: 106 SSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGL-----SNTEFAGPIPLQLGN 160
            SS+L + HL    +           E    L   +   L     +N EF   + + +  
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 161 LSRLQVLDIGFN---SLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKL---DS 214
           ++ L++ +I      +  S          ++    +L+ +N+    N    + +L    +
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248

Query: 215 LKALYLISCDLPPTIPSSDLYLNSSTSLEVIVI--LGNNLTDSIYPWLFNVSSNLVELIN 272
           +    + +  L   +   D    S TSL+ + I  + +++      +++ + SN+    N
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDY-SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK-N 306

Query: 273 LGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTLR--GDL 329
              +  +         +     L  ++N   +   ++ G++  L++L L  N L+    +
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 330 SEIIQNLSDGCTKTSLAWLFLDSNEITGSLP--NFGGFSSLKRLSIANNRLNGTINKSVG 387
           +E+   +       SL  L +  N ++      +     SL  L++++N L  TI + + 
Sbjct: 367 AEMTTQM------KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL- 419

Query: 388 QLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
              +++ L LH+N ++ +  +     L  L  L +A N L 
Sbjct: 420 -PPRIKVLDLHSNKIKSIPKQVV--KLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.8 bits (176), Expect = 5e-13
 Identities = 57/325 (17%), Positives = 112/325 (34%), Gaps = 34/325 (10%)

Query: 538 FLNLSKNKFS----GSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANN 593
            L +S N+          F       +L+Y+DLS+N L   +        +L  L+L+ N
Sbjct: 49  ILIISHNRIQYLDISVFKFN-----QELEYLDLSHNKLVK-ISCHP--TVNLKHLDLSFN 100

Query: 594 SFFGKIPDSIGF--LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWI 651
           +F   +P    F  +  L+ L L    L         + +   ++ +       +     
Sbjct: 101 AF-DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED--- 156

Query: 652 GEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNF------TA 705
            EGL +    SL            +  ++   + +L  +NI  ++     ++        
Sbjct: 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL 216

Query: 706 MTHEKGSNLTLISNYYTSLAYDSL-----KTTKSYFDKAVLTWKGSQYEYQ-----STLG 755
            T+ K SNLTL +   T  ++  +      TT  YF  + +  +G           ++L 
Sbjct: 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276

Query: 756 LVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQF 815
            + I  + S+  G          + +   N + +           ++     LD S N  
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

Query: 816 FGSIPSSLSQLSRLSVMDLSYNNLS 840
             ++  +   L+ L  + L  N L 
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLK 361

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  125 bits (315), Expect = 2e-30
 Identities = 60/314 (19%), Positives = 117/314 (37%), Gaps = 23/314 (7%)

Query: 118 LDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISG 177
           +      F   ++PE I   ++   L L           +  +   L+ L++  N + + 
Sbjct: 16  VLCHRKRFV--AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 178 ENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLN 237
           E     ++L +L  L L  + L        V + L +L  L +    +   +        
Sbjct: 72  EP-GAFNNLFNLRTLGLRSNRLKLIPL--GVFTGLSNLTKLDISENKI-VILLDYM--FQ 125

Query: 238 SSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFL 297
              +L+ + +  N+L   I    F+  ++L +L  L    L     EA  H+  L  L L
Sbjct: 126 DLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQL-TLEKCNLTSIPTEALSHLHGLIVLRL 183

Query: 298 ASNQFREIP-KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEIT 356
                  I   S   +  LK L +S+      ++             +L  L +    +T
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG------LNLTSLSITHCNLT 237

Query: 357 GSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
            ++P         L+ L+++ N ++      + +L++L+ + L    L  V   AF   L
Sbjct: 238 -AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF-RGL 295

Query: 415 SNLTILYLADNSLT 428
           + L +L ++ N LT
Sbjct: 296 NYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (299), Expect = 3e-28
 Identities = 68/366 (18%), Positives = 126/366 (34%), Gaps = 55/366 (15%)

Query: 106 SSSLLILQHLTYLDLSGNNFSGSSIPEFI-GSLSKLSYLGLSNTEFAGPIPLQLGNLSRL 164
                   HL  L+L+ N    S++      +L  L  LGL +             LS L
Sbjct: 49  QDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106

Query: 165 QVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCD 224
             LDI  N ++   +      L +L  L++  ++L   S+  +  S L+SL+ L L    
Sbjct: 107 TKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISH--RAFSGLNSLEQLTL---- 159

Query: 225 LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE 284
                                     NLT SI     +    L+ L  L    +      
Sbjct: 160 -----------------------EKCNLT-SIPTEALSHLHGLIVL-RLRHLNINAIRDY 194

Query: 285 AFGHMPSLNTLFLASNQF-REIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT 343
           +F  +  L  L ++   +   +  +     NL SL++++  L       +++L       
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL------V 248

Query: 344 SLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNS 401
            L +L L  N I+ ++          L+ + +   +L      +   L  L  L +  N 
Sbjct: 249 YLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307

Query: 402 LRGVISEAFLSNLSNLTILYLADNSLT----LEFSHDWIPPFQLSQVNLGSCKIGPRFPK 457
           L   + E+   ++ NL  L L  N L     L +          ++    +C      P+
Sbjct: 308 LT-TLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQP-TC----ATPE 361

Query: 458 WLRNQN 463
           +++ + 
Sbjct: 362 FVQGKE 367

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  116 bits (292), Expect = 2e-27
 Identities = 67/342 (19%), Positives = 131/342 (38%), Gaps = 44/342 (12%)

Query: 162 SRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLI 221
           +  ++LD+G N  I   N +  +    L  L+L+ + +S         + L +L+ L L 
Sbjct: 32  TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEP--GAFNNLFNLRTLGL- 87

Query: 222 SCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGS 281
                                       +N    I   +F   SNL +L ++  N++   
Sbjct: 88  ---------------------------RSNRLKLIPLGVFTGLSNLTKL-DISENKIVIL 119

Query: 282 IPEAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGC 340
           +   F  + +L +L +  N    I  ++   + +L+ LTL    L    +E + +L    
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL---- 175

Query: 341 TKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLH 398
               L  L L    I  ++ +  F     LK L I++     T+  +    + L SL + 
Sbjct: 176 --HGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232

Query: 399 NNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKW 458
           + +L  V   A   +L  L  L L+ N ++           +L ++ L   ++    P  
Sbjct: 233 HCNLTAVPYLAV-RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291

Query: 459 LRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQI 500
            R  N +  L++S + ++ T+    ++   NL    L +N +
Sbjct: 292 FRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (276), Expect = 2e-25
 Identities = 59/386 (15%), Positives = 126/386 (32%), Gaps = 84/386 (21%)

Query: 326 RGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTIN 383
           R     + + +      T    L L  N I  +L    F  F  L+ L +  N ++    
Sbjct: 20  RKRFVAVPEGIP-----TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEP 73

Query: 384 KSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQ 443
            +   L  L +L L +N L+ +    F + LSNLT L +++N + +      +       
Sbjct: 74  GAFNNLFNLRTLGLRSNRLKLIPLGVF-TGLSNLTKLDISENKIVI------LLD----- 121

Query: 444 VNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGK 503
                           ++   + SL++ ++ +       F     +L    L    +   
Sbjct: 122 -------------YMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-SLEQLTLEKCNLT-- 165

Query: 504 LPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDY 563
                           I +         L                            L  
Sbjct: 166 ---------------SIPTEALSH----LH--------------------------GLIV 180

Query: 564 IDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGEL 623
           + L +  ++      + +   L +L +++  +   +  +  +  NL SLS+ +  LT  +
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AV 239

Query: 624 PSF-FTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANV 682
           P     +   L  ++L  N +S  I   +   L+ L  + L   +     P     L  +
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298

Query: 683 QILDLSSNNISGIIPKCFNNFTAMTH 708
           ++L++S N ++ +    F++   +  
Sbjct: 299 RVLNVSGNQLTTLEESVFHSVGNLET 324

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (270), Expect = 9e-25
 Identities = 70/325 (21%), Positives = 125/325 (38%), Gaps = 41/325 (12%)

Query: 529 IPQ-LPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAI 587
           +P+ +P     L+L KN+   +++     +   L+ ++L+ N++S   P  ++   +L  
Sbjct: 26  VPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT 84

Query: 588 LNLANNSFFGKIPDSI-GFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGE 646
           L L +N     IP  +   L NL  L +  N++   L   F +   L  +++G N L   
Sbjct: 85  LGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-Y 142

Query: 647 IPTWIGEGLVNLVVLSLKSNKFNGSIPLQ-LCHLANVQILDLSSNNISGIIPKCFNNFTA 705
           I      GL +L  L+L+      SIP + L HL  + +L L   NI+ I    F     
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 706 MTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSN 765
           +       L +    Y      +     +                      +  L ++  
Sbjct: 202 LKV-----LEISHWPYLDTMTPNCLYGLN----------------------LTSLSITHC 234

Query: 766 KLGGEVPEE-IMDLAGLIALNLSRNTLTGQITPKI-GQLKSLDFLDLSRNQFFGSIPS-S 822
            L   VP   +  L  L  LNLS N ++  I   +  +L  L  + L   Q    +   +
Sbjct: 235 NLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQL-AVVEPYA 291

Query: 823 LSQLSRLSVMDLSYNNLSGKIPSGT 847
              L+ L V+++S N L+  +    
Sbjct: 292 FRGLNYLRVLNVSGNQLT-TLEESV 315

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.1 bits (242), Expect = 3e-21
 Identities = 59/381 (15%), Positives = 114/381 (29%), Gaps = 86/381 (22%)

Query: 465 ILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQ 524
              LD+  + I     + F +   +L    L+ N +                   +    
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFP-HLEELELNENIVS-----------------AVEPGA 75

Query: 525 FEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDS 584
           F   +  L      L L  N+    I          L  +D+S N +   L   +    +
Sbjct: 76  FNN-LFNL----RTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 585 LAILNLANNSFFGKIPDSIGF--LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNG 642
           L  L + +N     I     F  L +L+ L+L    LT       ++   L ++ L    
Sbjct: 130 LKSLEVGDNDL-VYISHRA-FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187

Query: 643 LSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNN 702
           ++  I  +  + L  L VL +    +  ++     +  N+  L ++  N++ +      +
Sbjct: 188 IN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246

Query: 703 FTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDL 762
              +                                                     L+L
Sbjct: 247 LVYLRF---------------------------------------------------LNL 255

Query: 763 SSNKLGGEVPEEI-MDLAGLIALNLSRNTLTGQITPKI-GQLKSLDFLDLSRNQFFGSIP 820
           S N +   +   +  +L  L  + L    L   + P     L  L  L++S NQ   ++ 
Sbjct: 256 SYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQL-TTLE 312

Query: 821 -SSLSQLSRLSVMDLSYNNLS 840
            S    +  L  + L  N L+
Sbjct: 313 ESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.1 bits (242), Expect = 4e-21
 Identities = 58/285 (20%), Positives = 99/285 (34%), Gaps = 34/285 (11%)

Query: 564 IDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGEL 623
           +          +P+         +L+L  N       D      +L+ L L  N ++   
Sbjct: 16  VLCHRKRFV-AVPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72

Query: 624 PSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQ 683
           P  F N   L  + L  N L   IP  +  GL NL  L +  NK    +      L N++
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131

Query: 684 ILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTW 743
            L++  N++  I  + F+   ++       LTL     TS+  ++L              
Sbjct: 132 SLEVGDNDLVYISHRAFSGLNSLEQ-----LTLEKCNLTSIPTEAL-------------- 172

Query: 744 KGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLK 803
                   S L  + +L L    +          L  L  L +S       +TP      
Sbjct: 173 --------SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

Query: 804 SLDFLDLSRNQFFGSIPS-SLSQLSRLSVMDLSYNNLSGKIPSGT 847
           +L  L ++      ++P  ++  L  L  ++LSYN +S  I    
Sbjct: 225 NLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSM 267

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 10/126 (7%)

Query: 104 TISSSLLILQHLTYLDLSGNNFSGSSIPEF-IGSLSKLSYLGLSNTEFAGPIPLQLGNLS 162
           T++ + L   +LT L ++  N   +++P   +  L  L +L LS    +      L  L 
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNL--TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272

Query: 163 RLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYL-- 220
           RLQ + +    L   E       L+ L  L++S + L+       V   + +L+ L L  
Sbjct: 273 RLQEIQLVGGQLAVVEP-YAFRGLNYLRVLNVSGNQLTTLEE--SVFHSVGNLETLILDS 329

Query: 221 --ISCD 224
             ++CD
Sbjct: 330 NPLACD 335

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  120 bits (303), Expect = 6e-29
 Identities = 83/470 (17%), Positives = 147/470 (31%), Gaps = 94/470 (20%)

Query: 227 PTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE-A 285
           P +P           +  + +  N++   +    F+   +L  L  +        I    
Sbjct: 26  PELP---------AHVNYVDLSLNSIA-ELNETSFSRLQDLQFL-KVEQQTPGLVIRNNT 74

Query: 286 FGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSL 345
           F  + SL  L L  NQF ++                        +     L       +L
Sbjct: 75  FRGLSSLIILKLDYNQFLQLE-----------------------TGAFNGL------ANL 105

Query: 346 AWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGV 405
             L L    + G++ +   F  L                       LE L L +N+++ +
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLT---------------------SLEMLVLRDNNIKKI 144

Query: 406 ISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQI 465
              +F  N+    +L L  N +      D +         L                  +
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS------------SITL 192

Query: 466 LSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQF 525
             +  +   +        +  T +++  +LS N  K  +               +  +  
Sbjct: 193 QDM--NEYWLGWEKCGNPFKNT-SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

Query: 526 EGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSL 585
                       F +     F G       +    +   DLS + +   L   +S F  L
Sbjct: 250 YNMGSSFGHTN-FKDPDNFTFKG-------LEASGVKTCDLSKSKIFALLKSVFSHFTDL 301

Query: 586 AILNLANNSFFGKIPDSIGF--LKNLQSLSLYNNRLTGELPSF-FTNGSQLTLMDLGKNG 642
             L LA N    KI D+  F  L +L  L+L  N L   + S  F N  +L ++DL  N 
Sbjct: 302 EQLTLAQNE-INKIDDNA-FWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNH 358

Query: 643 LSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQ-LCHLANVQILDLSSNN 691
           +   +      GL NL  L+L +N+   S+P      L ++Q + L +N 
Sbjct: 359 IR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  106 bits (267), Expect = 2e-24
 Identities = 68/335 (20%), Positives = 109/335 (32%), Gaps = 45/335 (13%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGF 171
           LQ L +L +                LS L  L L   +F          L+ L+VL +  
Sbjct: 53  LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112

Query: 172 NSLISGENLE-WLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYL----ISCDLP 226
            +L        +   L+SL  L L  +N+ K          +     L L    +     
Sbjct: 113 CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-ASFFLNMRRFHVLDLTFNKVKS--- 168

Query: 227 PTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAF 286
             I   DL         ++ +    L D                  +    L        
Sbjct: 169 --ICEEDLLNFQGKHFTLLRLSSITLQD------------------MNEYWLGWEKCGNP 208

Query: 287 GHMPSLNTLFLASNQFREIPK----SLGNMCNLKSLTLSYNTLRGD------LSEIIQNL 336
               S+ TL L+ N F+E              ++SL LS +   G         +     
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 337 SDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSV-GQLVKLE 393
             G   + +    L  ++I  +L    F  F+ L++L++A N +N  I+ +    L  L 
Sbjct: 269 FKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLL 326

Query: 394 SLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
            L L  N L  + S  F  NL  L +L L+ N + 
Sbjct: 327 KLNLSQNFLGSIDSRMF-ENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  101 bits (254), Expect = 8e-23
 Identities = 72/390 (18%), Positives = 139/390 (35%), Gaps = 50/390 (12%)

Query: 366 SSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
           + +  + ++ N +      S  +L  L+ L +   +   VI       LS+L IL L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 426 SLTLEFSHDWIPP------FQLSQVNLGSCKIGPRF--PKWLRNQNQILSLDISNSGISD 477
                     +          L  + L  C +        + +    +  L + ++ I  
Sbjct: 90  QFLQ------LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143

Query: 478 TVPNWFWNQTYNLSFFNLSNNQIK----GKLPNLSSRF-----HPYRPGIDISSNQFEGP 528
             P  F+         +L+ N++K      L N   +             D++       
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203

Query: 529 IPQLPLNASF---LNLSKNKFSGSIS--FLCSITGHKLDYIDLSNNLLSG---------R 574
               P   +    L+LS N F  S++  F  +I G K+  + LSN+   G          
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263

Query: 575 LPDCWS---QFDSLAILNLANNSFFGKIPDSI-GFLKNLQSLSLYNNRLTGELPSFFTNG 630
             +      +   +   +L+ +  F  +  S+     +L+ L+L  N +     + F   
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322

Query: 631 SQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQL-CHLANVQILDLSS 689
           + L  ++L +N L   I + + E L  L VL L  N    ++  Q    L N++ L L +
Sbjct: 323 THLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDT 380

Query: 690 NNISGIIPKCFNNFTAMTHEKGSNLTLISN 719
           N +  +    F+  T++       + L +N
Sbjct: 381 NQLKSVPDGIFDRLTSLQK-----IWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.1 bits (242), Expect = 3e-21
 Identities = 68/337 (20%), Positives = 116/337 (34%), Gaps = 52/337 (15%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFI-GSLSKLSYLGLSNTEFAGPIPLQL-GNLSRLQVLDI 169
           L +L  L L+  N  G+ +       L+ L  L L +       P     N+ R  VLD+
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161

Query: 170 GFNSLISGENLEWLS-HLSSLIYLDLSFSNLSKFSNWM------QVLSKLDSLKALYLIS 222
            FN + S    + L+        L LS   L   + +           K  S+  L L  
Sbjct: 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221

Query: 223 CDLPPTIPSSDLYLNSSTSLE---------VIVILGNNLTDSIYPWLF-NVSSNLVELIN 272
                ++        + T ++         +    G+        + F  + ++ V+  +
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281

Query: 273 LGSNQLQGSIPE-AFGHMPSLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRGDLS 330
           L  +++  ++ +  F H   L  L LA N+  +I   +   + +L  L LS N     L 
Sbjct: 282 LSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN----FLG 336

Query: 331 EIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLV 390
            I   + +   K  L  L L  N I  +L +   F                       L 
Sbjct: 337 SIDSRMFENLDK--LEVLDLSYNHIR-ALGD-QSFLG---------------------LP 371

Query: 391 KLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSL 427
            L+ L L  N L+ V    F   L++L  ++L  N  
Sbjct: 372 NLKELALDTNQLKSVPDGIF-DRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 82/365 (22%), Positives = 137/365 (37%), Gaps = 69/365 (18%)

Query: 529 IPQLPLNASFLNLSKNKFS----GSISFLCSITGHKLDYIDLSNNLLSGRLP-DCWSQFD 583
           +P+LP + ++++LS N  +     S S L       L ++ +        +  + +    
Sbjct: 25  VPELPAHVNYVDLSLNSIAELNETSFSRL-----QDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 584 SLAILNLANNSF-------FGK------------------IPDSIGF--LKNLQSLSLYN 616
           SL IL L  N F       F                    +  +  F  L +L+ L L +
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF-FKPLTSLEMLVLRD 138

Query: 617 NRLTGELP-SFFTNGSQLTLMDLGKNGLSGEIP--TWIGEGLVNLVVLSLKSNKFNGSIP 673
           N +    P SFF N  +  ++DL  N +   I     +     +  +L L S        
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNE 197

Query: 674 LQLC--------HLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLA 725
             L            ++  LDLS N     + K F +  A T  +   L+   N  +S  
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257

Query: 726 YDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD-LAGLIAL 784
           + + K   +       T+KG           VK  DLS +K+   + + +      L  L
Sbjct: 258 HTNFKDPDN------FTFKGL------EASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQL 304

Query: 785 NLSRNTLTGQITPKI-GQLKSLDFLDLSRNQFFGSIPS-SLSQLSRLSVMDLSYNNLSGK 842
            L++N +  +I       L  L  L+LS+N   GSI S     L +L V+DLSYN++   
Sbjct: 305 TLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA- 361

Query: 843 IPSGT 847
           +   +
Sbjct: 362 LGDQS 366

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.6 bits (168), Expect = 4e-12
 Identities = 49/275 (17%), Positives = 96/275 (34%), Gaps = 45/275 (16%)

Query: 608 NLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNK 667
           ++  + L  N +     + F+    L  + + +      I      GL +L++L L  N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 668 FNGSIPLQ-LCHLANVQILDLSSNNI-SGIIPK-CFNNFTAMTHEKGSNLTLISNYYTSL 724
           F   +       LAN+++L L+  N+   ++    F   T++       L L  N    +
Sbjct: 91  F-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM-----LVLRDNNIKKI 144

Query: 725 AYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEI--------- 775
              S       F                 +    +LDL+ NK+   + EE          
Sbjct: 145 QPASF------FLN---------------MRRFHVLDLTFNKV-KSICEEDLLNFQGKHF 182

Query: 776 --MDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPS---SLSQLSRLS 830
             + L+ +   +++   L  +      +  S+  LDLS N F  S+          +++ 
Sbjct: 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242

Query: 831 VMDLSYNNLSGKIPSGTQLQSFSTSMYAGNELCGL 865
            + LS +   G     T  +      + G E  G+
Sbjct: 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  116 bits (292), Expect = 6e-28
 Identities = 59/373 (15%), Positives = 132/373 (35%), Gaps = 32/373 (8%)

Query: 128 SSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLS 187
             I   +        + +           +   L+  +++    +++        L    
Sbjct: 11  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA-ALLDSFR 69

Query: 188 SLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVI 247
            +  L+L+   + +        +   +++ LY+    +   +P       +   L V+V+
Sbjct: 70  QVELLNLNDLQIEEIDT--YAFAYAHTIQKLYMGFNAI-RYLPPH--VFQNVPLLTVLVL 124

Query: 248 LGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPK 307
             N+L+ S+   +F+ +  L  L ++ +N L+    + F    SL  L L+SN+   +  
Sbjct: 125 ERNDLS-SLPRGIFHNTPKLTTL-SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD- 181

Query: 308 SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSS 367
            L  + +L    +SYN         +  L+      ++  L    N I   +        
Sbjct: 182 -LSLIPSLFHANVSYNL--------LSTLAIP---IAVEELDASHNSIN-VVRG-PVNVE 227

Query: 368 LKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSL 427
           L  L + +N L  T    +     L  + L  N L  ++   F   +  L  LY+++N L
Sbjct: 228 LTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRL 284

Query: 428 TLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQT 487
               +    P   L  ++L    +     +     +++ +L + ++ I     +      
Sbjct: 285 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTH---- 338

Query: 488 YNLSFFNLSNNQI 500
           + L    LS+N  
Sbjct: 339 HTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (277), Expect = 5e-26
 Identities = 78/438 (17%), Positives = 149/438 (34%), Gaps = 92/438 (21%)

Query: 250 NNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPK-S 308
           +  T  +Y    +++ N  +++   ++ ++            +  L L   Q  EI   +
Sbjct: 29  DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA 88

Query: 309 LGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFS 366
                 ++ L + +N +R     + QN+        L  L L+ N+++ SLP   F    
Sbjct: 89  FAYAHTIQKLYMGFNAIRYLPPHVFQNV------PLLTVLVLERNDLS-SLPRGIFHNTP 141

Query: 367 SLKRLSIANNRLNGTINKSVGQ-LVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
            L  LS++NN L   I     Q    L++L L +N L  V     LS + +L    ++ N
Sbjct: 142 KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSYN 196

Query: 426 SLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWN 485
            L+                              L     +  LD S++ I+         
Sbjct: 197 LLST-----------------------------LAIPIAVEELDASHNSINVVRGPVN-- 225

Query: 486 QTYNLSFFNLSNNQIK-----GKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLN 540
               L+   L +N +         P L          +D+S N+ E    ++  +  F+ 
Sbjct: 226 --VELTILKLQHNNLTDTAWLLNYPGLVE--------VDLSYNELE----KIMYHP-FVK 270

Query: 541 LSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIP 600
           +                  +L+ + +SNN L   L        +L +L+L++N     + 
Sbjct: 271 MQ-----------------RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH-LLHVE 311

Query: 601 DSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVV 660
            +      L++L L +N +     S       L  + L  N         +     N+  
Sbjct: 312 RNQPQFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWD---CNSLRALFRNVAR 365

Query: 661 LSLKSNKFNGSIPLQLCH 678
            ++     +  I  QL H
Sbjct: 366 PAVDDADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (276), Expect = 6e-26
 Identities = 62/326 (19%), Positives = 112/326 (34%), Gaps = 35/326 (10%)

Query: 106 SSSLLILQHLTYLDLSGNNFSGSSIPEFI-GSLSKLSYLGLSNTEFAGPIPLQLGNLSRL 164
               + L +   +    +      +P  +  S  ++  L L++ +              +
Sbjct: 38  GFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTI 95

Query: 165 QVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCD 224
           Q L +GFN++          ++  L  L L  ++LS       +      L  L + + +
Sbjct: 96  QKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNN 152

Query: 225 LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE 284
           L   I        ++TSL+ + +  N LT  +   L     +L    N+  N L      
Sbjct: 153 L-ERIEDDT--FQATTSLQNLQLSSNRLT-HVDLSLI---PSLFHA-NVSYNLLS----- 199

Query: 285 AFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTS 344
                 ++  L  + N    +   +     L  L L +N         + + +       
Sbjct: 200 TLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNN--------LTDTAWLLNYPG 249

Query: 345 LAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
           L  + L  NE+   +    F     L+RL I+NNRL   +N     +  L+ L L +N L
Sbjct: 250 LVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 307

Query: 403 RGVISEAFLSNLSNLTILYLADNSLT 428
             V           L  LYL  NS+ 
Sbjct: 308 LHVERNQP--QFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (258), Expect = 1e-23
 Identities = 60/306 (19%), Positives = 115/306 (37%), Gaps = 39/306 (12%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFI-GSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIG 170
              +  L +  N      +P  +  ++  L+ L L   + +        N  +L  L + 
Sbjct: 92  AHTIQKLYMGFNAIR--YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFS--------------NWMQVLSKLDSLK 216
            N+L   E+ +     +SL  L LS + L+                 N +  L+   +++
Sbjct: 150 NNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVE 208

Query: 217 ALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSN 276
            L      +      + +    +  L ++ +  NNLTD+   WL N    LVE+ +L  N
Sbjct: 209 ELDASHNSI------NVVRGPVNVELTILKLQHNNLTDT--AWLLNYP-GLVEV-DLSYN 258

Query: 277 QLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNL 336
           +L+  +   F  M  L  L++++N+   +      +  LK L LS+N L   +       
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317

Query: 337 SDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLF 396
                   L  L+LD N I  +L       +LK L++++N  +   N        +    
Sbjct: 318 ------DRLENLYLDHNSIV-TLK-LSTHHTLKNLTLSHNDWDC--NSLRALFRNVARPA 367

Query: 397 LHNNSL 402
           + +   
Sbjct: 368 VDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 99.7 bits (249), Expect = 2e-22
 Identities = 77/469 (16%), Positives = 138/469 (29%), Gaps = 120/469 (25%)

Query: 367 SLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNS 426
               + I     +         L   + +   N+++R + +     +   + +L L D  
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL-DSFRQVELLNLNDLQ 80

Query: 427 LTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQ 486
           +        I  +  +                    + I  L +  + I    P+ F N 
Sbjct: 81  IEE------IDTYAFA------------------YAHTIQKLYMGFNAIRYLPPHVFQNV 116

Query: 487 TYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKF 546
              L+   L  N +                               LP    F N  K   
Sbjct: 117 P-LLTVLVLERNDLS-----------------------------SLPRGI-FHNTPK--- 142

Query: 547 SGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFL 606
                         L  + +SNN L     D +    SL  L L++N     +      +
Sbjct: 143 --------------LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDL--SLI 185

Query: 607 KNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSN 666
            +L   ++  N L+            +  +D   N ++  +    G   V L +L L+ N
Sbjct: 186 PSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQHN 236

Query: 667 KFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAY 726
                    L +   +  +DLS N +  I+   F     +       L + +N   +L  
Sbjct: 237 NLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER-----LYISNNRLVALNL 289

Query: 727 DSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNL 786
                                      +  +K+LDLS N L   V         L  L L
Sbjct: 290 YG-----------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325

Query: 787 SRNTLTGQITPKIGQLKSLDFLDLSRNQF-FGSIPSSLSQLSRLSVMDL 834
             N++    T K+    +L  L LS N +   S+ +    ++R +V D 
Sbjct: 326 DHNSIV---TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 99.3 bits (248), Expect = 3e-22
 Identities = 61/318 (19%), Positives = 119/318 (37%), Gaps = 22/318 (6%)

Query: 532 LPLNASFLNLSKNKFSGSISF-LCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNL 590
           L  +  F ++  +  +  + F    IT +    +   N+ +          F  + +LNL
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 591 ANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTW 650
            +         +  +   +Q L +  N +    P  F N   LT++ L +N LS  +P  
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRG 135

Query: 651 IGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEK 710
           I      L  LS+ +N              ++Q L LSSN ++ +      +        
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF------ 189

Query: 711 GSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGE 770
             +  +  N  ++LA   +   +       +            + L  IL L  N L   
Sbjct: 190 --HANVSYNLLSTLA-IPIAVEELDASHNSIN----VVRGPVNVEL-TILKLQHNNL--T 239

Query: 771 VPEEIMDLAGLIALNLSRNTLTGQITPKI-GQLKSLDFLDLSRNQFFGSIPSSLSQLSRL 829
               +++  GL+ ++LS N L  +I      +++ L+ L +S N+   ++      +  L
Sbjct: 240 DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTL 297

Query: 830 SVMDLSYNNLSGKIPSGT 847
            V+DLS+N+L   +    
Sbjct: 298 KVLDLSHNHLL-HVERNQ 314

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 74.7 bits (184), Expect = 3e-14
 Identities = 37/257 (14%), Positives = 81/257 (31%), Gaps = 39/257 (15%)

Query: 592 NNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWI 651
               +  I  ++ +      + +                +   ++    + +  ++P  +
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAAL 64

Query: 652 GEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKG 711
            +    + +L+L   +          +   +Q L +  N I  + P  F N   +T    
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV--- 121

Query: 712 SNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEV 771
             L L  N  +SL                                +  L +S+N L   +
Sbjct: 122 --LVLERNDLSSLPRGIF----------------------HNTPKLTTLSMSNNNLE-RI 156

Query: 772 PEEI-MDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLS 830
            ++       L  L LS N LT      +  + SL   ++S N       S+L+    + 
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNLL-----STLAIPIAVE 208

Query: 831 VMDLSYNNLSGKIPSGT 847
            +D S+N+++  +    
Sbjct: 209 ELDASHNSIN-VVRGPV 224

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 6e-09
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 15/164 (9%)

Query: 111 ILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIG 170
           +   LT L L  NN   +     +     L  + LS  E    +      + RL+ L I 
Sbjct: 224 VNVELTILKLQHNNL--TDTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
            N L++         + +L  LDLS ++L           + D L+ LYL    +     
Sbjct: 281 NNRLVALNLY--GQPIPTLKVLDLSHNHLLHVER---NQPQFDRLENLYLDHNSI----- 330

Query: 231 SSDLYLNSSTSLEVIVILGNNLT-DSIYPWLFNVSSNLVELINL 273
              L L++  +L+ + +  N+   +S+     NV+   V+  + 
Sbjct: 331 -VTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 5/94 (5%)

Query: 104 TISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSR 163
            ++     +  L  LDLS N+     +        +L  L L +        L+L     
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHT 340

Query: 164 LQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFS 197
           L+ L +  N            +++     D    
Sbjct: 341 LKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  118 bits (298), Expect = 9e-28
 Identities = 69/320 (21%), Positives = 108/320 (33%), Gaps = 62/320 (19%)

Query: 111 ILQHLTYLDLSGNNFSGSSIPEFIGSLSKL--SYLGLSNTEFAGPIPLQLGNLSRLQVLD 168
           +  H+T L +  NN +  S+P     L  L  S   L++      +P+    L  L +  
Sbjct: 59  LPAHITTLVIPDNNLT--SLPALPPELRTLEVSGNQLTS------LPVLPPGLLELSIFS 110

Query: 169 IGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPT 228
                L +          S L  L +  + L+        L +L  +    L S  LP  
Sbjct: 111 NPLTHLPAL--------PSGLCKLWIFGNQLTSLPVLPPGLQELS-VSDNQLAS--LPAL 159

Query: 229 IPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGH 288
                        L  +    N LT      L  + S L EL ++  NQL  S+P     
Sbjct: 160 PS----------ELCKLWAYNNQLTS-----LPMLPSGLQEL-SVSDNQLA-SLPTLPSE 202

Query: 289 MPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWL 348
           +  L      +N+   +P        LK L +S N L   L  +   L           L
Sbjct: 203 LYKLWAY---NNRLTSLPALPS---GLKELIVSGNRLT-SLPVLPSELK---------EL 246

Query: 349 FLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISE 408
            +  N +T SLP     S L  LS+  N+L   + +S+  L    ++ L  N L     +
Sbjct: 247 MVSGNRLT-SLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302

Query: 409 AFLSNLSNLTILYLADNSLT 428
                L  +T        + 
Sbjct: 303 ----ALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  113 bits (283), Expect = 6e-26
 Identities = 65/317 (20%), Positives = 112/317 (35%), Gaps = 58/317 (18%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGF 171
                 L++  +    +++P+ +   + ++ L + +      +P        L+ L++  
Sbjct: 39  NNGNAVLNVGESGL--TTLPDCLP--AHITTLVIPDNNLTS-LPALPPE---LRTLEVSG 90

Query: 172 NSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPS 231
           N L S   L     L  L       ++L               L  L++    L  ++P 
Sbjct: 91  NQLTSLPVL--PPGLLELSIFSNPLTHLPAL---------PSGLCKLWIFGNQL-TSLP- 137

Query: 232 SDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPS 291
                     L+ + +  N L  S+        S L +L    +NQL  S+P        
Sbjct: 138 -----VLPPGLQELSVSDNQLA-SLPALP----SELCKL-WAYNNQLT-SLPMLPS---G 182

Query: 292 LNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLD 351
           L  L ++ NQ   +P        L  L    N L   L  +   L           L + 
Sbjct: 183 LQELSVSDNQLASLPTLPS---ELYKLWAYNNRLT-SLPALPSGLK---------ELIVS 229

Query: 352 SNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFL 411
            N +T SLP     S LK L ++ NRL  ++         L SL ++ N L  +     L
Sbjct: 230 GNRLT-SLPVL--PSELKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLTRLPES--L 280

Query: 412 SNLSNLTILYLADNSLT 428
            +LS+ T + L  N L+
Sbjct: 281 IHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (258), Expect = 7e-23
 Identities = 70/433 (16%), Positives = 134/433 (30%), Gaps = 116/433 (26%)

Query: 265 SNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNT 324
           +    L N+G + L  ++P+       + TL +  N    +P        L++L +S N 
Sbjct: 40  NGNAVL-NVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPALPPE---LRTLEVSGNQ 92

Query: 325 LRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINK 384
           L   L  +   L        L+        +            L +L I  N+L  ++  
Sbjct: 93  LT-SLPVLPPGL------LELSIFSNPLTHLPALPSG------LCKLWIFGNQLT-SLPV 138

Query: 385 SVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQV 444
               L   + L + +N L      +  +  S L  L+  +N              QL+  
Sbjct: 139 LPPGL---QELSVSDNQL-----ASLPALPSELCKLWAYNN--------------QLTS- 175

Query: 445 NLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK--- 501
                                L +  S                  L   ++S+NQ+    
Sbjct: 176 ---------------------LPMLPSG-----------------LQELSVSDNQLASLP 197

Query: 502 ---GKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITG 558
               +L  L              +N+    +P LP     L +S N+ +   S     + 
Sbjct: 198 TLPSELYKL-----------WAYNNRLT-SLPALPSGLKELIVSGNRLT---SLPVLPS- 241

Query: 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR 618
            +L  + +S N L+  LP   S    L  L++  N    ++P+S+  L +  +++L  N 
Sbjct: 242 -ELKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNP 295

Query: 619 LTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCH 678
           L+ E         ++T        +   I   +          +L     +  +P +   
Sbjct: 296 LS-ERT--LQALREITSAPGYSGPI---IRFDMAGASAPRETRALHLAAADWLVPAREGE 349

Query: 679 LANVQILDLSSNN 691
            A      +    
Sbjct: 350 PAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.6 bits (248), Expect = 1e-21
 Identities = 73/367 (19%), Positives = 120/367 (32%), Gaps = 95/367 (25%)

Query: 474 GISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLP 533
           G +  V           +  N+  + +   LP                          LP
Sbjct: 26  GRAAVVQKMRACLNNGNAVLNVGESGLT-TLP------------------------DCLP 60

Query: 534 LNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANN 593
            + + L +  N  +   S        +L  +++S N L+  LP        L+I +    
Sbjct: 61  AHITTLVIPDNNLT---SLPALPP--ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT 114

Query: 594 SFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGE 653
                +P        L  L ++ N+LT  LP        L  + +  N L+  +P     
Sbjct: 115 H----LPALPS---GLCKLWIFGNQLT-SLPVLPPG---LQELSVSDNQLA-SLPALPS- 161

Query: 654 GLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSN 713
               L  L   +N+   S+P+    L   Q L +S N ++  +P   +            
Sbjct: 162 ---ELCKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELY--------K 205

Query: 714 LTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPE 773
           L   +N  TSL                           +    +K L +S N+L   +P 
Sbjct: 206 LWAYNNRLTSL--------------------------PALPSGLKELIVSGNRL-TSLPV 238

Query: 774 EIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMD 833
                + L  L +S N LT  +      L S   L + RNQ    +P SL  LS  + ++
Sbjct: 239 LP---SELKELMVSGNRLT-SLPMLPSGLLS---LSVYRNQ-LTRLPESLIHLSSETTVN 290

Query: 834 LSYNNLS 840
           L  N LS
Sbjct: 291 LEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.6 bits (248), Expect = 1e-21
 Identities = 74/408 (18%), Positives = 138/408 (33%), Gaps = 88/408 (21%)

Query: 453 PRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK---GKLPNLSS 509
            +    L N N +L  ++  SG++ T+P+       +++   + +N +       P L +
Sbjct: 32  QKMRACLNNGNAVL--NVGESGLT-TLPDCLPA---HITTLVIPDNNLTSLPALPPELRT 85

Query: 510 RFHPYRPGIDISSNQFEGPIPQLPLNAS---FLNLSKNKFSGSISFLCSITGHKLDYIDL 566
                   +++S NQ    +P LP         +          S LC +         +
Sbjct: 86  --------LEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKL--------WI 128

Query: 567 SNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSF 626
             N L+  LP        L  L++++N     +P        L  L  YNN+LT  LP  
Sbjct: 129 FGNQLT-SLPV---LPPGLQELSVSDNQL-ASLPALPS---ELCKLWAYNNQLT-SLPML 179

Query: 627 FTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILD 686
            +    L  + +  N L+  +PT        L  L   +N+   S+P     L   + L 
Sbjct: 180 PSG---LQELSVSDNQLA-SLPTLPS----ELYKLWAYNNRLT-SLPALPSGL---KELI 227

Query: 687 LSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGS 746
           +S N ++ + P   +            L +  N  TSL                      
Sbjct: 228 VSGNRLTSL-PVLPSELK--------ELMVSGNRLTSLP--------------------- 257

Query: 747 QYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLD 806
                     +  L +  N+L   +PE ++ L+    +NL  N L+ +    + ++ S  
Sbjct: 258 -----MLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAP 311

Query: 807 FLDLSRNQFFGSIPS--SLSQLSRLSVMDLSYNNLSGKIPSGTQLQSF 852
                  +F  +  S    ++   L+  D       G+     +   F
Sbjct: 312 GYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.2 bits (247), Expect = 2e-21
 Identities = 65/356 (18%), Positives = 116/356 (32%), Gaps = 73/356 (20%)

Query: 366 SSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
           +    L++  + L  T+   +     + +L + +N+L      +  +    L  L ++ N
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNL-----TSLPALPPELRTLEVSGN 91

Query: 426 SLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWN 485
            LT                           P       ++       + +          
Sbjct: 92  QLT-------------------------SLPVLPPGLLELSIFSNPLTHLPALPSG---- 122

Query: 486 QTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNK 545
               L    +  NQ+   LP L          + +S NQ    +P LP     L    N+
Sbjct: 123 ----LCKLWIFGNQLT-SLPVLPPGLQE----LSVSDNQLAS-LPALPSELCKLWAYNNQ 172

Query: 546 FSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGF 605
            +   S     +G  L  + +S+N L+  LP        L  L   NN     +P     
Sbjct: 173 LT---SLPMLPSG--LQELSVSDNQLA-SLPT---LPSELYKLWAYNNRL-TSLPALPS- 221

Query: 606 LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKS 665
              L+ L +  NRLT  LP   +    L  + +  N L+  +P         L+ LS+  
Sbjct: 222 --GLKELIVSGNRLT-SLPVLPSE---LKELMVSGNRLT-SLPMLPS----GLLSLSVYR 270

Query: 666 NKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYY 721
           N+    +P  L HL++   ++L  N +S            +T   G +  +I    
Sbjct: 271 NQLT-RLPESLIHLSSETTVNLEGNPLSERT---LQALREITSAPGYSGPIIRFDM 322

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.9 bits (241), Expect = 8e-21
 Identities = 63/402 (15%), Positives = 128/402 (31%), Gaps = 64/402 (15%)

Query: 240 TSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLAS 299
               V+ +  + LT ++   L     ++  L  +  N L  S+P        L TL ++ 
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA---HITTL-VIPDNNLT-SLPALPPE---LRTLEVSG 90

Query: 300 NQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQ-NLSDGCTK------TSLAWLFLDS 352
           NQ   +P     +  L   +     L    S + +  +              L  L +  
Sbjct: 91  NQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD 150

Query: 353 NEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLS 412
           N++  SLP     S L +L   NN+L  ++         L+ L + +N L      +  +
Sbjct: 151 NQLA-SLPA--LPSELCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQL-----ASLPT 198

Query: 413 NLSNLTILYLADNSLTLEFSHDWIP--PFQLSQVNLGSCKIG--PRFPKWLRNQNQILSL 468
             S L  L+  +N LT       +P  P  L ++ +   ++   P  P  L+       L
Sbjct: 199 LPSELYKLWAYNNRLT------SLPALPSGLKELIVSGNRLTSLPVLPSELKE------L 246

Query: 469 DISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK------GKLPNLSSRFHPYRPGIDISS 522
            +S + ++ ++P         L   ++  NQ+         L + ++        +++  
Sbjct: 247 MVSGNRLT-SLPMLPS----GLLSLSVYRNQLTRLPESLIHLSSETT--------VNLEG 293

Query: 523 NQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQF 582
           N       Q     +                 S           + + L        +  
Sbjct: 294 NPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPA 353

Query: 583 DSLAIL-NLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGEL 623
           D   +     N   F    D +   +N    + +  +++  L
Sbjct: 354 DRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWL 395

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.6 bits (230), Expect = 2e-19
 Identities = 65/376 (17%), Positives = 123/376 (32%), Gaps = 69/376 (18%)

Query: 340 CTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHN 399
           C     A L +  + +T +LP+    + +  L I +N L  ++     +L  LE   +  
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPD-CLPAHITTLVIPDNNLT-SLPALPPELRTLE---VSG 90

Query: 400 NSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWL 459
           N L  +        L  L+I       L          P  L ++ +   ++    P   
Sbjct: 91  NQLTSLPVL--PPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-SLPVLP 140

Query: 460 RNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGID 519
                +  L +S++ ++ ++P         L      NNQ+   LP L            
Sbjct: 141 PG---LQELSVSDNQLA-SLPALPSE----LCKLWAYNNQLT-SLPML------------ 179

Query: 520 ISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCW 579
                       L      L++S N+    ++ L ++    L  +   NN L+  LP   
Sbjct: 180 ---------PSGL----QELSVSDNQ----LASLPTLPSE-LYKLWAYNNRLT-SLP--- 217

Query: 580 SQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG 639
           +    L  L ++ N     +P        L+ L +  NRLT  LP   +    L  + + 
Sbjct: 218 ALPSGLKELIVSGNRL-TSLPVLPS---ELKELMVSGNRLT-SLPMLPSG---LLSLSVY 269

Query: 640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKC 699
           +N L+  +P  +   L +   ++L+ N  +      L  + +                  
Sbjct: 270 RNQLT-RLPESLIH-LSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA 327

Query: 700 FNNFTAMTHEKGSNLT 715
                A+       L 
Sbjct: 328 PRETRALHLAAADWLV 343

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.1 bits (226), Expect = 6e-19
 Identities = 56/300 (18%), Positives = 104/300 (34%), Gaps = 68/300 (22%)

Query: 567 SNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSF 626
               +  ++  C +  +  A+LN+  +     +PD +    ++ +L + +N LT  LP+ 
Sbjct: 26  GRAAVVQKMRACLN--NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPAL 79

Query: 627 FTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILD 686
                 L  +++  N L+  +P     GL+ L + S         +P     L     L 
Sbjct: 80  PPE---LRTLEVSGNQLT-SLPVLPP-GLLELSIFSNPLT----HLPALPSGL---CKLW 127

Query: 687 LSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGS 746
           +  N ++ + P                L++  N   SL                      
Sbjct: 128 IFGNQLTSL-PVLPPGLQ--------ELSVSDNQLASLP--------------------- 157

Query: 747 QYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLD 806
                +    +  L   +N+L   +P      +GL  L++S N L   +     +L  L 
Sbjct: 158 -----ALPSELCKLWAYNNQLT-SLPMLP---SGLQELSVSDNQLA-SLPTLPSELYKLW 207

Query: 807 FLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNELCGLP 866
             +        S+P+  S L  L    +S N L+      ++L+    S   GN L  LP
Sbjct: 208 AYNNRLT----SLPALPSGLKEL---IVSGNRLTSLPVLPSELKELMVS---GNRLTSLP 257

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (286), Expect = 1e-27
 Identities = 57/326 (17%), Positives = 113/326 (34%), Gaps = 31/326 (9%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGF 171
                 L   G+  +     + +    +      +          +  N +  Q+     
Sbjct: 11  SSGRENLYFQGST-ALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTG 65

Query: 172 NSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPS 231
            +L +  +L   +     + L+L    L +F +      +L  L+ + + +  L   +P 
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQFPD---QAFRLSHLQHMTIDAAGLM-ELPD 121

Query: 232 SDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQL--------QGSIP 283
           +         LE + +  N L  ++   + +++  L EL      +L             
Sbjct: 122 TMQQF---AGLETLTLARNPLR-ALPASIASLN-RLRELSIRACPELTELPEPLASTDAS 176

Query: 284 EAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT 343
                + +L +L L     R +P S+ N+ NLKSL +  + L   L   I +L       
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHL------P 229

Query: 344 SLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
            L  L L       + P  FGG + LKRL + +     T+   + +L +LE L L     
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 403 RGVISEAFLSNLSNLTILYLADNSLT 428
              +    ++ L    I+ +  +   
Sbjct: 290 LSRLPSL-IAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (279), Expect = 9e-27
 Identities = 43/296 (14%), Positives = 91/296 (30%), Gaps = 63/296 (21%)

Query: 110 LILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDI 169
                   L+L          P+    LS L ++ +        +P  +   + L+ L +
Sbjct: 78  ATQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTL 134

Query: 170 GFNSLISGENL-EWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPT 228
             N L +   L   ++ L+ L  L +                +L            LP  
Sbjct: 135 ARNPLRA---LPASIASLNRLRELSIRACP------------ELTE----------LPEP 169

Query: 229 IPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGH 288
           + S+D                                NL  L  L    ++ S+P +  +
Sbjct: 170 LASTDA-----------------------SGEHQGLVNLQSL-RLEWTGIR-SLPASIAN 204

Query: 289 MPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWL 348
           + +L +L + ++    +  ++ ++  L+ L L   T   +   I            L  L
Sbjct: 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR------APLKRL 258

Query: 349 FL-DSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
            L D + +  +LP      + L++L +        +   + QL     + +  +  
Sbjct: 259 ILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (271), Expect = 1e-25
 Identities = 53/313 (16%), Positives = 102/313 (32%), Gaps = 38/313 (12%)

Query: 560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLK--NLQSLSLYNN 617
           +    D +    + R  +      +   +            D +         +L L + 
Sbjct: 37  RHYNADRNRWHSAWRQAN-----SNNPQIETRTGRALKATADLLEDATQPGRVALELRSV 91

Query: 618 RLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLC 677
            L  + P      S L  M +   GL  E+P  + +    L  L+L  N    ++P  + 
Sbjct: 92  PLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIA 147

Query: 678 HLANVQILDLSSNNISGIIPKCFNNFTAMTHEKG-SNLTLISNYYTSLAY--DSLKTTKS 734
            L  ++ L + +      +P+   +  A    +G  NL  +   +T +     S+     
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI----- 202

Query: 735 YFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQ 794
                            + L  +K L + ++ L   +   I  L  L  L+L   T    
Sbjct: 203 -----------------ANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN 244

Query: 795 ITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSG-TQLQSFS 853
             P  G    L  L L       ++P  + +L++L  +DL       ++PS   QL +  
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

Query: 854 TSMYAGNELCGLP 866
             +   +    L 
Sbjct: 305 IILVPPHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (257), Expect = 7e-24
 Identities = 63/384 (16%), Positives = 113/384 (29%), Gaps = 83/384 (21%)

Query: 264 SSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYN 323
           SS    L   GS  L+    +           + A            N  N +  T +  
Sbjct: 11  SSGRENLYFQGSTALR-PYHDVLS---QWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 324 TLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTI 382
            L+     +     +  T+     L L S  +    P+     S L+ ++I    L   +
Sbjct: 67  ALKATADLL-----EDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 383 NKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLS 442
             ++ Q   LE+L L  N LR + +   +++L+ L  L +                 +L+
Sbjct: 120 PDTMQQFAGLETLTLARNPLRALPAS--IASLNRLRELSIRACP-------------ELT 164

Query: 443 QV--NLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQI 500
           ++   L S           +    + SL +  +GI  ++P    N   NL    + N+ +
Sbjct: 165 ELPEPLASTDA----SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ-NLKSLKIRNSPL 218

Query: 501 KGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHK 560
              L                                            +I  L       
Sbjct: 219 S-ALGP------------------------------------------AIHHLPK----- 230

Query: 561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT 620
           L+ +DL         P  +     L  L L + S    +P  I  L  L+ L L      
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 621 GELPSFFTNGSQLTLMDLGKNGLS 644
             LPS         ++ +  +  +
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.4 bits (238), Expect = 2e-21
 Identities = 60/403 (14%), Positives = 108/403 (26%), Gaps = 105/403 (26%)

Query: 185 HLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEV 244
           H S    L    S              L   +  Y    +   +         +S + ++
Sbjct: 10  HSSGRENLYFQGST-----ALRPYHDVLSQWQRHYNADRNRWHSAWR----QANSNNPQI 60

Query: 245 IVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE 304
               G  L  +            V L  L S  L    P+    +  L  + + +    E
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVAL-ELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME 118

Query: 305 IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--- 361
           +P ++     L++LTL+ N LR  L   I +L        L  L + +      LP    
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-ALPASIASL------NRLRELSIRACPELTELPEPLA 171

Query: 362 -------FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
                    G  +L+ L +    +  ++  S+  L  L+SL + N+ L  +     + +L
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA--IHHL 228

Query: 415 SNLTILYLAD-NSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNS 473
             L  L L    +L                           +P     +  +  L + + 
Sbjct: 229 PKLEELDLRGCTALR-------------------------NYPPIFGGRAPLKRLILKDC 263

Query: 474 GISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLP 533
               T+P      T  L   +L       +LP+                           
Sbjct: 264 SNLLTLPLDIHRLT-QLEKLDLRGCVNLSRLPS--------------------------- 295

Query: 534 LNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLP 576
                  L  N                   I +  +L +    
Sbjct: 296 ---LIAQLPANC-----------------IILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.7 bits (231), Expect = 2e-20
 Identities = 55/346 (15%), Positives = 106/346 (30%), Gaps = 59/346 (17%)

Query: 380 GTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPF 439
           G+ +         E+L+   ++        +   LS     Y AD +             
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTAL----RPYHDVLSQWQRHYNADRNRWHSAWR--QANS 55

Query: 440 QLSQVNLGSCKIGPRFPKWLRNQNQI--LSLDISNSGISDTVPNWFWNQTYNLSFFNLSN 497
              Q+   + +        L +  Q   ++L++ +  +    P+  +  + +L    +  
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDA 113

Query: 498 NQIK------GKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSIS 551
             +        +   L +        + ++ N        LP  AS  +L++        
Sbjct: 114 AGLMELPDTMQQFAGLET--------LTLARNPLR----ALP--ASIASLNR-------- 151

Query: 552 FLCSITGHKLDYIDLSNNLLSGRLPD---------CWSQFDSLAILNLANNSFFGKIPDS 602
                    L  + +        LP+               +L  L L        +P S
Sbjct: 152 ---------LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPAS 201

Query: 603 IGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLS 662
           I  L+NL+SL + N+ L+  L     +  +L  +DL         P   G     L  L 
Sbjct: 202 IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLI 259

Query: 663 LKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTH 708
           LK      ++PL +  L  ++ LDL        +P       A   
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.1 bits (188), Expect = 6e-15
 Identities = 36/232 (15%), Positives = 74/232 (31%), Gaps = 48/232 (20%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDI-G 170
           L HL ++ +         +P+ +   + L  L L+       +P  + +L+RL+ L I  
Sbjct: 103 LSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRA 159

Query: 171 FNSLIS-------GENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISC 223
              L          +       L +L  L L ++ +         ++ L +LK+L + + 
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS---IANLQNLKSLKIRNS 216

Query: 224 ---DLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQ- 279
               L P I    L       LE + + G     +  P     +  L  LI    + L  
Sbjct: 217 PLSALGPAI--HHL-----PKLEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLT 268

Query: 280 ----------------------GSIPEAFGHMPSLNTLFLASNQFREIPKSL 309
                                   +P     +P+   + +  +   ++ +  
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 35/285 (12%), Positives = 68/285 (23%), Gaps = 77/285 (27%)

Query: 596 FGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGL 655
            G            ++L    +          +   +    D  +   +           
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----NS 55

Query: 656 VNLVVLSLKSNKFNGSIP-LQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNL 714
            N  + +        +   L+         L+L S  +    P      + + H      
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQH------ 108

Query: 715 TLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEE 774
                                                        + + +  L  E+P+ 
Sbjct: 109 ---------------------------------------------MTIDAAGLM-ELPDT 122

Query: 775 IMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQ--------- 825
           +   AGL  L L+RN L   +   I  L  L  L +        +P  L+          
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 826 LSRLSVMDLSYNNLSGKIPSG----TQLQSFSTSMYAGNELCGLP 866
           L  L  + L +  +   +P+       L+S        + L  L 
Sbjct: 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIR---NSPLSALG 222

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (284), Expect = 4e-26
 Identities = 60/373 (16%), Positives = 132/373 (35%), Gaps = 32/373 (8%)

Query: 128 SSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLS 187
             I   +        + +           +   L+  +++    +++        L    
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA-ALLDSFR 75

Query: 188 SLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVI 247
            +  L+L+   + +        +   +++ LY+    +   +P       +   L V+V+
Sbjct: 76  QVELLNLNDLQIEEIDT--YAFAYAHTIQKLYMGFNAI-RYLPPH--VFQNVPLLTVLVL 130

Query: 248 LGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPK 307
             N+L+ S+   +F+ +  L  L ++ +N L+    + F    SL  L L+SN+   +  
Sbjct: 131 ERNDLS-SLPRGIFHNTPKLTTL-SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD- 187

Query: 308 SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSS 367
            L  + +L    +SYN L          L+      ++  L    N I   +        
Sbjct: 188 -LSLIPSLFHANVSYNLL--------STLAIP---IAVEELDASHNSIN-VVRG-PVNVE 233

Query: 368 LKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSL 427
           L  L + +N L  T    +     L  + L  N L  ++   F   +  L  LY+++N L
Sbjct: 234 LTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRL 290

Query: 428 TLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQT 487
               +    P   L  ++L    +     +     +++ +L + ++ I     +      
Sbjct: 291 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTH---- 344

Query: 488 YNLSFFNLSNNQI 500
           + L    LS+N  
Sbjct: 345 HTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (279), Expect = 2e-25
 Identities = 81/460 (17%), Positives = 155/460 (33%), Gaps = 97/460 (21%)

Query: 228 TIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFG 287
            I S+  Y      + +     +  T  +Y    +++ N  +++   ++ ++        
Sbjct: 18  CIDSNLQYDCVFYDVHI-----DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD 72

Query: 288 HMPSLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLA 346
               +  L L   Q  EI   +      ++ L + +N +R     + QN+        L 
Sbjct: 73  SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV------PLLT 126

Query: 347 WLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQ-LVKLESLFLHNNSLR 403
            L L+ N+++ SLP   F     L  LS++NN L   I     Q    L++L L +N L 
Sbjct: 127 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 184

Query: 404 GVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQN 463
            V     LS + +L    ++ N L+                              L    
Sbjct: 185 HV----DLSLIPSLFHANVSYNLLST-----------------------------LAIPI 211

Query: 464 QILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-----GKLPNLSSRFHPYRPGI 518
            +  LD S++ I+             L+   L +N +         P L          +
Sbjct: 212 AVEELDASHNSINVVRGPVN----VELTILKLQHNNLTDTAWLLNYPGLVE--------V 259

Query: 519 DISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDC 578
           D+S N+ E    ++  +  F+ +                  +L+ + +SNN L   L   
Sbjct: 260 DLSYNELE----KIMYHP-FVKMQ-----------------RLERLYISNNRLV-ALNLY 296

Query: 579 WSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638
                +L +L+L++N     +  +      L++L L +N +     S       L  + L
Sbjct: 297 GQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT---LKNLTL 352

Query: 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCH 678
             N         +     N+   ++     +  I  QL H
Sbjct: 353 SHNDWD---CNSLRALFRNVARPAVDDADQHCKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  110 bits (277), Expect = 3e-25
 Identities = 62/414 (14%), Positives = 144/414 (34%), Gaps = 41/414 (9%)

Query: 299 SNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGS 358
            N     P+      NL+   + Y+      ++ +    +  T  +   +   ++ +   
Sbjct: 7   YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-K 65

Query: 359 LPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSN 416
           LP      F  ++ L++ + ++      +      ++ L++  N++R +    F  N+  
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPL 124

Query: 417 LTILYLADNSLTLEFSHDWIPPF------QLSQVNLGSCKIGPRFPKWLRNQNQILSLDI 470
           LT+L L  N L+       +P        +L+ +++ +  +        +    + +L +
Sbjct: 125 LTVLVLERNDLSS------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178

Query: 471 SNSGISDTVPNWFWNQTYNLSFFNLSNNQIK--GKLPNLSSRFHPYRPGIDISSNQFEGP 528
           S++ ++    +       +L   N+S N +        +          +D S N     
Sbjct: 179 SSNRLTHVDLSLIP----SLFHANVSYNLLSTLAIPIAVEE--------LDASHNSINVV 226

Query: 529 IPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAIL 588
              + +  + L L  N  +   ++L +     L  +DLS N L   +   + +   L  L
Sbjct: 227 RGPVNVELTILKLQHNNLT-DTAWLLNYP--GLVEVDLSYNELEKIMYHPFVKMQRLERL 283

Query: 589 NLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIP 648
            ++NN     +      +  L+ L L +N L   +        +L  + L  N +   + 
Sbjct: 284 YISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK 340

Query: 649 TWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNN 702
                    L  L+L  N ++ +    L    NV    +   +    I     +
Sbjct: 341 L---STHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  110 bits (275), Expect = 5e-25
 Identities = 62/322 (19%), Positives = 112/322 (34%), Gaps = 35/322 (10%)

Query: 110 LILQHLTYLDLSGNNFSGSSIPEFI-GSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLD 168
           + L +   +    +      +P  +  S  ++  L L++ +              +Q L 
Sbjct: 48  ITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLY 105

Query: 169 IGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPT 228
           +GFN++          ++  L  L L  ++LS       +      L  L + + +L   
Sbjct: 106 MGFNAIRYLPP-HVFQNVPLLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNL-ER 161

Query: 229 IPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGH 288
           I        ++TSL+ + +  N LT  +   L     +L    N+  N L          
Sbjct: 162 IEDD--TFQATTSLQNLQLSSNRLT-HVDLSLI---PSLFHA-NVSYNLLS-----TLAI 209

Query: 289 MPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWL 348
             ++  L  + N    +   +     L  L L +N         + + +       L  +
Sbjct: 210 PIAVEELDASHNSINVVRGPV--NVELTILKLQHNN--------LTDTAWLLNYPGLVEV 259

Query: 349 FLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVI 406
            L  NE+   +    F     L+RL I+NNRL   +N     +  L+ L L +N L  V 
Sbjct: 260 DLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVE 317

Query: 407 SEAFLSNLSNLTILYLADNSLT 428
                     L  LYL  NS+ 
Sbjct: 318 RNQP--QFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  101 bits (253), Expect = 2e-22
 Identities = 65/269 (24%), Positives = 114/269 (42%), Gaps = 33/269 (12%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFI-GSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIG 170
           +  LT L L  N+ S  S+P  I  +  KL+ L +SN              + LQ L + 
Sbjct: 122 VPLLTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
            N L   +    LS + SL + ++S+       N +  L+   +++ L      +     
Sbjct: 180 SNRLTHVD----LSLIPSLFHANVSY-------NLLSTLAIPIAVEELDASHNSI----- 223

Query: 231 SSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMP 290
            + +    +  L ++ +  NNLTD+   WL N    LVE+ +L  N+L+  +   F  M 
Sbjct: 224 -NVVRGPVNVELTILKLQHNNLTDT--AWLLNYP-GLVEV-DLSYNELEKIMYHPFVKMQ 278

Query: 291 SLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFL 350
            L  L++++N+   +      +  LK L LS+N L   +               L  L+L
Sbjct: 279 RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF------DRLENLYL 331

Query: 351 DSNEITGSLPNFGGFSSLKRLSIANNRLN 379
           D N I  +L       +LK L++++N  +
Sbjct: 332 DHNSIV-TLK-LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 98.8 bits (246), Expect = 2e-21
 Identities = 61/311 (19%), Positives = 118/311 (37%), Gaps = 21/311 (6%)

Query: 532 LPLNASFLNLSKNKFSGSISF-LCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNL 590
           L  +  F ++  +  +  + F    IT +    +   N+ +          F  + +LNL
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82

Query: 591 ANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTW 650
            +         +  +   +Q L +  N +    P  F N   LT++ L +N LS  +P  
Sbjct: 83  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRG 141

Query: 651 IGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEK 710
           I      L  LS+ +N              ++Q L LSSN ++ +      +        
Sbjct: 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF------ 195

Query: 711 GSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGE 770
             +  +  N  ++LA   +   +       +            + L  IL L  N L   
Sbjct: 196 --HANVSYNLLSTLA-IPIAVEELDASHNSIN----VVRGPVNVEL-TILKLQHNNL--T 245

Query: 771 VPEEIMDLAGLIALNLSRNTLTGQITPKI-GQLKSLDFLDLSRNQFFGSIPSSLSQLSRL 829
               +++  GL+ ++LS N L  +I      +++ L+ L +S N+   ++      +  L
Sbjct: 246 DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTL 303

Query: 830 SVMDLSYNNLS 840
            V+DLS+N+L 
Sbjct: 304 KVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.8 bits (238), Expect = 2e-20
 Identities = 69/457 (15%), Positives = 133/457 (29%), Gaps = 136/457 (29%)

Query: 395 LFLHNNSLRGVISEAFLS----NLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCK 450
              ++  +     + +       L+N  I+   ++++        +P   L         
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK------LPAALLD-------- 72

Query: 451 IGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-------GK 503
                     +  Q+  L++++  I +     F      +    +  N I+         
Sbjct: 73  ----------SFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQN 121

Query: 504 LPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDY 563
           +P L+         + +  N     +  LP    F N  K                 L  
Sbjct: 122 VPLLTV--------LVLERND----LSSLPRGI-FHNTPK-----------------LTT 151

Query: 564 IDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGEL 623
           + +SNN L     D +    SL  L L++N     +      + +L   ++  N L+   
Sbjct: 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDL--SLIPSLFHANVSYNLLS--- 205

Query: 624 PSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQ 683
                    +  +D   N ++  +    G   V L +L L+ N         L +   + 
Sbjct: 206 --TLAIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQHNNLT-DTA-WLLNYPGLV 257

Query: 684 ILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTW 743
            +DLS N +  I+   F     +                                     
Sbjct: 258 EVDLSYNELEKIMYHPFVKMQRLER----------------------------------- 282

Query: 744 KGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLK 803
                           L +S+N+L   +      +  L  L+LS N L   +     Q  
Sbjct: 283 ----------------LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 324

Query: 804 SLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLS 840
            L+ L L  N    ++   LS    L  + LS+N+  
Sbjct: 325 RLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 72.3 bits (177), Expect = 3e-13
 Identities = 43/265 (16%), Positives = 85/265 (32%), Gaps = 43/265 (16%)

Query: 589 NLANNSFFGKIPDSIGFLKNLQS-LSLYNNRLTGELPSFFTNGSQLTL-----MDLGKNG 642
                +   + P+      NLQ     Y+  +  +    +     +TL     +    + 
Sbjct: 3   GQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST 62

Query: 643 LSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNN 702
           +  ++P  + +    + +L+L   +          +   +Q L +  N I  + P  F N
Sbjct: 63  MR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121

Query: 703 FTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDL 762
              +T      L L  N  +SL                                +  L +
Sbjct: 122 VPLLTV-----LVLERNDLSSLPRGIF----------------------HNTPKLTTLSM 154

Query: 763 SSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSS 822
           S+N L     +       L  L LS N LT  +      + SL   ++S N       S+
Sbjct: 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLL-----ST 206

Query: 823 LSQLSRLSVMDLSYNNLSGKIPSGT 847
           L+    +  +D S+N+++  +    
Sbjct: 207 LAIPIAVEELDASHNSIN-VVRGPV 230

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 33/311 (10%), Positives = 82/311 (26%), Gaps = 20/311 (6%)

Query: 104 TISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSR 163
            ++     +  L  LDLS N+     +        +L  L L +        L+L     
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHL--LHVERNQPQFDRLENLYLDHNSIV---TLKLSTHHT 346

Query: 164 LQVLDIGFNSLISGENLEWLSHLS--SLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLI 221
           L+ L +  N            +++  ++   D       +  + +             L 
Sbjct: 347 LKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQ 406

Query: 222 SCDLPPTIPSSDLYLNSSTSLEVIVILGNNLT--DSIYPWLFNVSSNLVELINLGSNQLQ 279
              L   +          ++ + I  + +               +  L   +N    ++Q
Sbjct: 407 YIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQ 466

Query: 280 GSIPEAFGHMPSLNTLFLASN--------QFREIPKSLGNMCNLKSLTLSYNTLRGDLSE 331
               E       L  L    +            + +S  N+  + +        +   ++
Sbjct: 467 QLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQ 526

Query: 332 IIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGG--FSSLKRLSIANNRLNGTINKSVGQL 389
             +  +D   +     L  ++  +   L N         +  S+   ++     K     
Sbjct: 527 ARRTEAD-AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNP 585

Query: 390 VKLESLFLHNN 400
                   H++
Sbjct: 586 DTRRVSHHHHH 596

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  111 bits (279), Expect = 1e-25
 Identities = 97/537 (18%), Positives = 171/537 (31%), Gaps = 71/537 (13%)

Query: 291 SLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFL 350
             + +  ++     +PK        K+L+LS N++       I  L      + L  L L
Sbjct: 32  LESMVDYSNRNLTHVPK--DLPPRTKALSLSQNSISELRMPDISFL------SELRVLRL 83

Query: 351 DSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISE 408
             N I  SL    F     L+ L +++NRL    N S   +  L  L L  N    +   
Sbjct: 84  SHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ---NISCCPMASLRHLDLSFNDFDVLPVC 139

Query: 409 AFLSNLSNLTILYLADNSLT----LEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQN- 463
               NL+ LT L L+         L  +H  +    L   +L S  I     + L+  N 
Sbjct: 140 KEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILL---DLVSYHIKGGETESLQIPNT 196

Query: 464 QILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSN 523
            +L L    + +     N   N   +L   N+  N                         
Sbjct: 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN----------------CQRLMT 240

Query: 524 QFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGR-----LPDC 578
                     L    L   +  +  S+          ++Y+++ N  ++ R         
Sbjct: 241 FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS 300

Query: 579 WSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638
            +   SL I ++ N  F             +    L  +           + S  T ++ 
Sbjct: 301 ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360

Query: 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPK 698
            +N  + +        L  L  L L+ N    +         N+  L+    +++ +   
Sbjct: 361 TQNVFT-DSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSH 418

Query: 699 CFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVK 758
            ++   A   E    L L SN  T   +  L                           VK
Sbjct: 419 AYDRTCAWA-ESILVLNLSSNMLTGSVFRCLPPK------------------------VK 453

Query: 759 ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQF 815
           +LDL +N++   +P+++  L  L  LN++ N L         +L SL ++ L  N +
Sbjct: 454 VLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  109 bits (274), Expect = 6e-25
 Identities = 81/501 (16%), Positives = 167/501 (33%), Gaps = 64/501 (12%)

Query: 226 PPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE- 284
           P  +P     L+          L  N    +     +  S L  L  L  N+++ S+   
Sbjct: 47  PKDLPPRTKALS----------LSQNSISELRMPDISFLSELRVL-RLSHNRIR-SLDFH 94

Query: 285 AFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRG-DLSEIIQNLSDGCTKT 343
            F     L  L ++ N+ + I      M +L+ L LS+N      + +   NL      T
Sbjct: 95  VFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNL------T 146

Query: 344 SLAWLFLDSNEITGSLPNFGGFSSLK----RLSIANNRLNGTINKSVGQL-VKLESLFLH 398
            L +L L + +      +    + L      L + +  + G   +S+      +  L  H
Sbjct: 147 KLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204

Query: 399 NNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKW 458
            NSL  V     ++ L +L +  +  N    +    ++                      
Sbjct: 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT------------------ 246

Query: 459 LRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGI 518
                  ++L    +    +V  + +     + + N+ N  I  ++      +       
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 519 ----DISSNQFEGPIP---QLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLL 571
                + +  F         +    +   LS +  +  I  +C  +     +++ + N+ 
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-TPFIHMVCPPSPSSFTFLNFTQNVF 365

Query: 572 SGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT----GELPSFF 627
           +  +    S    L  L L  N             KN+ SL   +  L            
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424

Query: 628 TNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDL 687
                + +++L  N L+G +   +      + VL L +N+   SIP  + HL  +Q L++
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCLPP---KVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480

Query: 688 SSNNISGIIPKCFNNFTAMTH 708
           +SN +  +    F+  T++ +
Sbjct: 481 ASNQLKSVPDGVFDRLTSLQY 501

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.0 bits (231), Expect = 1e-19
 Identities = 68/328 (20%), Positives = 117/328 (35%), Gaps = 23/328 (7%)

Query: 110 LILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSR------ 163
           L + + T L L  +  S  S+   + S++ L +L LSN +       +L           
Sbjct: 191 LQIPNTTVLHLVFHPNSLFSVQVNM-SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249

Query: 164 ------LQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKA 217
                 LQ ++  +   +      W   +  L   +L+ +       +    + L SL  
Sbjct: 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309

Query: 218 LYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQ 277
            ++ +     +  +                L  + T  I+       S+   L N   N 
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKM----LSISDTPFIHMVCPPSPSSFTFL-NFTQNV 364

Query: 278 LQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLS 337
              S+ +    +  L TL L  N  +   K      N+ SL     +L    S       
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424

Query: 338 DGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFL 397
                 S+  L L SN +TGS+        +K L + NNR+  +I K V  L  L+ L +
Sbjct: 425 AW--AESILVLNLSSNMLTGSVFR-CLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480

Query: 398 HNNSLRGVISEAFLSNLSNLTILYLADN 425
            +N L+ V    F   L++L  ++L DN
Sbjct: 481 ASNQLKSVPDGVF-DRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.2 bits (216), Expect = 6e-18
 Identities = 90/521 (17%), Positives = 160/521 (30%), Gaps = 103/521 (19%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFI-GSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIG 170
           L  L  L LS N     S+   +      L YL +S+        +    ++ L+ LD+ 
Sbjct: 75  LSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLS 129

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
           FN        +   +L+ L +L LS +   +                             
Sbjct: 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD--------------------------- 162

Query: 231 SSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMP 290
                L     L +  IL + ++  I               N     L            
Sbjct: 163 -----LLPVAHLHLSCILLDLVSYHIKGGETESLQIP----NTTVLHL------------ 201

Query: 291 SLNTLFLASNQFREIPKSLGN--MCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWL 348
             +   L S Q      +LG+  + N+K    +   L   LSE+ +  +      +L  +
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL--LNVTLQHI 259

Query: 349 FLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQ-----LVKLESLFLHNNSLR 403
                     L  F     ++ L+I N  +   I++         L  L    + N    
Sbjct: 260 ETTWKCSV-KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL 318

Query: 404 GVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQN 463
                 +    + + I  L+ +          + P   S                     
Sbjct: 319 FSKEALYSV-FAEMNIKMLSISDTPFIHM---VCPPSPS--------------------- 353

Query: 464 QILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRP--GIDIS 521
               L+ + +  +D+V          L    L  N +K     ++           +D+S
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVS 411

Query: 522 SNQFEGPIP----QLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPD 577
            N               +   LNLS N  +GS+ F C     K+  +DL NN +   +P 
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-FRC--LPPKVKVLDLHNNRIM-SIPK 467

Query: 578 CWSQFDSLAILNLANNSFFGKIPDSI-GFLKNLQSLSLYNN 617
             +   +L  LN+A+N     +PD +   L +LQ + L++N
Sbjct: 468 DVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.6 bits (178), Expect = 3e-13
 Identities = 56/322 (17%), Positives = 103/322 (31%), Gaps = 30/322 (9%)

Query: 538 FLNLSKNKFS----GSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANN 593
            L LS N+          F        L+Y+D+S+N L   +        SL  L+L+ N
Sbjct: 80  VLRLSHNRIRSLDFHVFLFN-----QDLEYLDVSHNRLQN-IS--CCPMASLRHLDLSFN 131

Query: 594 SFFGKIPDSIGF--LKNLQSLSLYNNRLTGELPSFFTNGSQLTLM-DLGKNGLSGEIPTW 650
            F   +P    F  L  L  L L   +          +     ++ DL    + G     
Sbjct: 132 DF-DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETES 190

Query: 651 IGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEK 710
           +   + N  VL L  +  +         +  +  L LS+  ++    +    F +     
Sbjct: 191 LQ--IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248

Query: 711 GSNLTLISNYYTSLAYDSLKTTKSYFDKAV------------LTWKGSQYEYQSTLGLVK 758
            + L +   +  +    S+K  + ++ + V               +      ++ L  + 
Sbjct: 249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM 308

Query: 759 ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGS 818
           I  + +              A +    LS +              S  FL+ ++N F  S
Sbjct: 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS 368

Query: 819 IPSSLSQLSRLSVMDLSYNNLS 840
           +    S L RL  + L  N L 
Sbjct: 369 VFQGCSTLKRLQTLILQRNGLK 390

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  101 bits (254), Expect = 2e-23
 Identities = 54/274 (19%), Positives = 95/274 (34%), Gaps = 26/274 (9%)

Query: 112 LQHLTYLDLSGNNFSGSSIPE--FIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDI 169
           L++L  L L  N    S I    F   L KL  L LS  +      L       LQ L +
Sbjct: 75  LKNLHTLILINNKI--SKISPGAFAP-LVKLERLYLSKNQLKE---LPEKMPKTLQELRV 128

Query: 170 GFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISC---DLP 226
             N  I+       + L+ +I ++L  + L            +  L  + +       +P
Sbjct: 129 HENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187

Query: 227 PTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAF 286
             +P          SL  + + GN +T  +        +NL +L  L  N +      + 
Sbjct: 188 QGLPP---------SLTELHLDGNKIT-KVDAASLKGLNNLAKL-GLSFNSISAVDNGSL 236

Query: 287 GHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLA 346
            + P L  L L +N+  ++P  L +   ++ + L  N +    S           K S +
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 347 WLFLDSNEIT-GSLPN--FGGFSSLKRLSIANNR 377
            + L SN +    +    F        + + N +
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (251), Expect = 4e-23
 Identities = 65/323 (20%), Positives = 117/323 (36%), Gaps = 53/323 (16%)

Query: 529 IPQ-LPLNASFLNLSKNKFS----GSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFD 583
           +P+ LP + + L+L  NK +    G    L       L  + L NN +S   P  ++   
Sbjct: 46  VPKDLPPDTALLDLQNNKITEIKDGDFKNL-----KNLHTLILINNKISKISPGAFAPLV 100

Query: 584 SLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGL 643
            L  L L+ N    ++P+     K LQ L ++ N +T    S F   +Q+ +++LG N L
Sbjct: 101 KLERLYLSKNQL-KELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157

Query: 644 -SGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNN 702
            S  I     +G+  L  + +       +IP  L    ++  L L  N I+ +       
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKG 214

Query: 703 FTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDL 762
              +       L L  N  +++   SL                      +    ++ L L
Sbjct: 215 LNNLAK-----LGLSFNSISAVDNGSL----------------------ANTPHLRELHL 247

Query: 763 SSNKLGGEVPEEIMDLAGLIALNLSRNTLTG------QITPKIGQLKSLDFLDLSRNQF- 815
           ++NKL  +VP  + D   +  + L  N ++              +  S   + L  N   
Sbjct: 248 NNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

Query: 816 FGSIPSSL-SQLSRLSVMDLSYN 837
           +  I  S    +   + + L   
Sbjct: 307 YWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.4 bits (243), Expect = 5e-22
 Identities = 65/288 (22%), Positives = 113/288 (39%), Gaps = 36/288 (12%)

Query: 224 DLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIP 283
            +P  +P     L+          L NN    I    F    NL  L  L +N++    P
Sbjct: 45  KVPKDLPPDTALLD----------LQNNKITEIKDGDFKNLKNLHTL-ILINNKISKISP 93

Query: 284 EAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTK- 342
            AF  +  L  L+L+ NQ +E+P+ +     L+ L +  N         I  +       
Sbjct: 94  GAFAPLVKLERLYLSKNQLKELPEKMPK--TLQELRVHENE--------ITKVRKSVFNG 143

Query: 343 -TSLAWLFLDSNEIT-GSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLH 398
              +  + L +N +    + N  F G   L  + IA+  +  TI + +     L  L L 
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLD 200

Query: 399 NNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKW 458
            N +   +  A L  L+NL  L L+ NS++   +        L +++L + K+  + P  
Sbjct: 201 GNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258

Query: 459 LRNQNQILSLDISNSGISDTVPNWFWNQTY-----NLSFFNLSNNQIK 501
           L +   I  + + N+ IS    N F    Y     + S  +L +N ++
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 63/359 (17%), Positives = 119/359 (33%), Gaps = 71/359 (19%)

Query: 269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRG 327
            ++      L+  +P+     P    L L +N+  EI      N+ NL +L L  N +  
Sbjct: 34  RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 328 DLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSV- 386
                   L        L  L+L  N++   LP      +L+ L +  N +   + KSV 
Sbjct: 91  ISPGAFAPL------VKLERLYLSKNQLK-ELPE-KMPKTLQELRVHENEIT-KVRKSVF 141

Query: 387 GQLVKLESLFLHNNSLRGV-ISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPF---QLS 442
             L ++  + L  N L+   I       +  L+ + +AD ++T       IP      L+
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT------TIPQGLPPSLT 195

Query: 443 QVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK- 501
           +++L   KI       L+  N +  L +S + IS        N   +L   +L+NN++  
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLVK 254

Query: 502 --GKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGH 559
             G L +           + + +N                 +  N F             
Sbjct: 255 VPGGLADHKYIQV-----VYLHNNNIS-------------AIGSNDFCPPGYNTKK---A 293

Query: 560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR 618
               + L +N +                  +  ++F          +    ++ L N +
Sbjct: 294 SYSGVSLFSNPVQ--------------YWEIQPSTFRC--------VYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 68/390 (17%), Positives = 127/390 (32%), Gaps = 104/390 (26%)

Query: 291 SLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFL 350
            L  +  +     ++PK L    +   L L  N +        +NL       +L  L L
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNL------KNLHTLIL 83

Query: 351 DSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISE 408
            +N+I+  +    F     L+RL ++ N+L   +         L+ L +H N +  V   
Sbjct: 84  INNKIS-KISPGAFAPLVKLERLYLSKNQLK-EL--PEKMPKTLQELRVHENEITKVRKS 139

Query: 409 AFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSL 468
            F + L+ + ++ L  N L                                         
Sbjct: 140 VF-NGLNQMIVVELGTNPLK---------------------------------------- 158

Query: 469 DISNSGISDTVPNWFWNQTYNLSFFNLSNNQI----KGKLPNLSSRFHPYRPGIDISSNQ 524
              +SGI       F      LS+  +++  I    +G  P+L+         + +  N+
Sbjct: 159 ---SSGIE---NGAFQGMK-KLSYIRIADTNITTIPQGLPPSLTE--------LHLDGNK 203

Query: 525 FEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDS 584
               I ++   +    L                 + L  + LS N +S       +    
Sbjct: 204 ----ITKVDAAS-LKGL-----------------NNLAKLGLSFNSISAVDNGSLANTPH 241

Query: 585 LAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTG------ELPSFFTNGSQLTLMDL 638
           L  L+L NN    K+P  +   K +Q + L+NN ++         P + T  +  + + L
Sbjct: 242 LRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300

Query: 639 GKNGLS-GEIPTWIGEGLVNLVVLSLKSNK 667
             N +   EI       +     + L + K
Sbjct: 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.8 bits (187), Expect = 8e-15
 Identities = 53/289 (18%), Positives = 94/289 (32%), Gaps = 66/289 (22%)

Query: 563 YIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGE 622
            +DL NN ++      +    +L  L L NN      P +   L  L+ L L  N+L   
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115

Query: 623 LPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSI--PLQLCHLA 680
                     L  + + +N ++ ++   +  GL  ++V+ L +N    S         + 
Sbjct: 116 PEKMPKT---LQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171

Query: 681 NVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAV 740
            +  + ++  NI+ I                 +LT                         
Sbjct: 172 KLSYIRIADTNITTIPQGLP-----------PSLT------------------------- 195

Query: 741 LTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD-LAGLIALNLSRNTLTGQITPKI 799
                              L L  NK+  +V    +  L  L  L LS N+++  +    
Sbjct: 196 ------------------ELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGS 235

Query: 800 -GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGT 847
                 L  L L+ N+    +P  L+    + V+ L  NN+S  I S  
Sbjct: 236 LANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNIS-AIGSND 282

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 49/228 (21%), Positives = 88/228 (38%), Gaps = 36/228 (15%)

Query: 632 QLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNN 691
            L ++     GL  ++P  +     +  +L L++NK          +L N+  L L +N 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 692 ISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTK---------SYFDKAVLT 742
           IS I P  F     +       L L  N    L     KT +         +   K+V  
Sbjct: 88  ISKISPGAFAPLVKLER-----LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF- 141

Query: 743 WKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIM--DLAGLIALNLSRNTLTGQITPKIG 800
                    + L  + +++L +N L     E      +  L  + ++   +T  I    G
Sbjct: 142 ---------NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--G 189

Query: 801 QLKSLDFLDLSRNQFFGSIPS-SLSQLSRLSVMDLSYNNLSGKIPSGT 847
              SL  L L  N+    + + SL  L+ L+ + LS+N++S  + +G+
Sbjct: 190 LPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGS 235

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  100 bits (251), Expect = 2e-22
 Identities = 61/244 (25%), Positives = 97/244 (39%), Gaps = 17/244 (6%)

Query: 162 SRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLI 221
           +  ++L++  N +   +      HL  L  L LS +++          + L +L  L L 
Sbjct: 64  TNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEI--GAFNGLANLNTLELF 120

Query: 222 SCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGS 281
              L  TIP+        + L+ +  L NN  +SI  + FN   +L  L      +L   
Sbjct: 121 DNRLT-TIPNGAFV--YLSKLKEL-WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 282 IPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCT 341
              AF  + +L  L LA    REIP +L  +  L  L LS N L        Q L     
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL----- 230

Query: 342 KTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHN 399
              L  L++  ++I   +    F    SL  +++A+N L    +     L  LE + LH+
Sbjct: 231 -MHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

Query: 400 NSLR 403
           N   
Sbjct: 289 NPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.5 bits (217), Expect = 3e-18
 Identities = 69/330 (20%), Positives = 111/330 (33%), Gaps = 91/330 (27%)

Query: 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTLRGDL 329
           +      L+  +P+      +   L L  NQ + I   S  ++ +L+ L LS N +R   
Sbjct: 48  VICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE 104

Query: 330 SEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSV- 386
                 L       +L  L L  N +T ++PN  F   S LK L + NN +  +I     
Sbjct: 105 IGAFNGL------ANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAF 156

Query: 387 GQLVKLESLFL-HNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVN 445
            ++  L  L L     L  +   AF   LSNL  L LA  +L        IP        
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAF-EGLSNLRYLNLAMCNLRE------IPNL------ 203

Query: 446 LGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLP 505
                             ++  LD+S + +S   P  F     +L    +  +QI+    
Sbjct: 204 --------------TPLIKLDELDLSGNHLSAIRPGSFQGLM-HLQKLWMIQSQIQ---- 244

Query: 506 NLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYID 565
                                     +  NA F NL                   L  I+
Sbjct: 245 -------------------------VIERNA-FDNLQS-----------------LVEIN 261

Query: 566 LSNNLLSGRLPDCWSQFDSLAILNLANNSF 595
           L++N L+    D ++    L  ++L +N +
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.7 bits (215), Expect = 6e-18
 Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 17/221 (7%)

Query: 112 LQHLTYLDLSGNNFSGSSIPE--FIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDI 169
           L+HL  L LS N+    +I    F G L+ L+ L L +             LS+L+ L +
Sbjct: 87  LRHLEILQLSRNHI--RTIEIGAFNG-LANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143

Query: 170 GFNSLISGENLEWLSHLSSLIYLDLSFSN-LSKFSNWMQVLSKLDSLKALYLISCDLPPT 228
             N + S  +    + + SL  LDL     LS  S        L +L+ L L  C+L   
Sbjct: 144 RNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNL-RE 199

Query: 229 IPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGH 288
           IP+    L     L+ + + GN+L+ +I P  F    +L +L  +  +Q+Q     AF +
Sbjct: 200 IPN----LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKL-WMIQSQIQVIERNAFDN 253

Query: 289 MPSLNTLFLASNQFREIPKS-LGNMCNLKSLTLSYNTLRGD 328
           + SL  + LA N    +P      + +L+ + L +N    +
Sbjct: 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.5 bits (191), Expect = 5e-15
 Identities = 57/252 (22%), Positives = 101/252 (40%), Gaps = 38/252 (15%)

Query: 599 IPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNL 658
           +PD I    N + L+L+ N++     + F +   L ++ L +N +   I      GL NL
Sbjct: 58  VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANL 114

Query: 659 VVLSLKSNKFNGSIPLQ-LCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI 717
             L L  N+   +IP     +L+ ++ L L +N I  I    FN   ++       L L 
Sbjct: 115 NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR-----LDLG 168

Query: 718 S-NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIM 776
                + ++  +                         L  ++ L+L+   L  E+P  + 
Sbjct: 169 ELKRLSYISEGAF----------------------EGLSNLRYLNLAMCNLR-EIPN-LT 204

Query: 777 DLAGLIALNLSRNTLTGQITPKI-GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLS 835
            L  L  L+LS N L+  I P     L  L  L + ++Q      ++   L  L  ++L+
Sbjct: 205 PLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263

Query: 836 YNNLSGKIPSGT 847
           +NNL+  +P   
Sbjct: 264 HNNLT-LLPHDL 274

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 57/288 (19%), Positives = 102/288 (35%), Gaps = 59/288 (20%)

Query: 529 IPQ-LPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAI 587
           +P  +  N   LNL +N+    I          L+ + LS N +                
Sbjct: 58  VPDGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR--------------- 101

Query: 588 LNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEI 647
             +   +F G        L NL +L L++NRLT      F   S+L  + L  N +   I
Sbjct: 102 -TIEIGAFNG--------LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SI 151

Query: 648 PTWIGEGLVNLVVLSLKSNKFNGSIPLQ-LCHLANVQILDLSSNNISGIIPKCFNNFTAM 706
           P++    + +L  L L   K    I       L+N++ L+L+  N+  I          +
Sbjct: 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKL 209

Query: 707 THEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNK 766
                  L L  N+ +++   S +                       L  ++ L +  ++
Sbjct: 210 DE-----LDLSGNHLSAIRPGSFQ----------------------GLMHLQKLWMIQSQ 242

Query: 767 LGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI-GQLKSLDFLDLSRN 813
           +         +L  L+ +NL+ N LT  +   +   L  L+ + L  N
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.8 bits (171), Expect = 2e-12
 Identities = 53/226 (23%), Positives = 87/226 (38%), Gaps = 37/226 (16%)

Query: 624 PSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQ 683
           PS  +  +Q + +   +  L  E+P  I     N  +L+L  N+          HL +++
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLE 91

Query: 684 ILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTW 743
           IL LS N+I  I    FN    +       L L  N  T++   +               
Sbjct: 92  ILQLSRNHIRTIEIGAFNGLANLNT-----LELFDNRLTTIPNGAF-------------- 132

Query: 744 KGSQYEYQSTLGLVKILDLSSNKLGGEVPEEI-MDLAGLIALNLSRNTLTGQITPKI-GQ 801
                     L  +K L L +N +   +P      +  L  L+L        I+      
Sbjct: 133 --------VYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 802 LKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGT 847
           L +L +L+L+       IP +L+ L +L  +DLS N+LS  I  G+
Sbjct: 184 LSNLRYLNLAMCN-LREIP-NLTPLIKLDELDLSGNHLS-AIRPGS 226

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  100 bits (251), Expect = 2e-22
 Identities = 55/244 (22%), Positives = 100/244 (40%), Gaps = 17/244 (6%)

Query: 162 SRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLI 221
           S  + L++  N++   +      HL  L  L L  +++ +        + L SL  L L 
Sbjct: 75  SNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEV--GAFNGLASLNTLELF 131

Query: 222 SCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGS 281
              L   IPS        + L  + +  N +  SI  + FN   +L+ L      +L+  
Sbjct: 132 DNWLT-VIPSGAFE--YLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 282 IPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCT 341
              AF  + +L  L L     +++P +L  +  L+ L +S N            L     
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGL----- 241

Query: 342 KTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHN 399
            +SL  L++ +++++  +    F G +SL  L++A+N L+   +     L  L  L LH+
Sbjct: 242 -SSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

Query: 400 NSLR 403
           N   
Sbjct: 300 NPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 58/270 (21%), Positives = 87/270 (32%), Gaps = 46/270 (17%)

Query: 111 ILQHLTYLDLSGNNFSGSSIPEFI-GSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDI 169
           I  +  YL+L  NN     I       L  L  L L               L+ L  L++
Sbjct: 73  IPSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130

Query: 170 GFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTI 229
             N L    +     +LS L  L L  + +    +     +++ SL  L L         
Sbjct: 131 FDNWLTVIPS-GAFEYLSKLRELWLRNNPIESIPS--YAFNRVPSLMRLDLGEL------ 181

Query: 230 PSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHM 289
                                 L   I    F    NL  L NLG   ++  +P     +
Sbjct: 182 --------------------KKLE-YISEGAFEGLFNLKYL-NLGMCNIK-DMP-NLTPL 217

Query: 290 PSLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWL 348
             L  L ++ N F EI   S   + +LK L +  + +          L       SL  L
Sbjct: 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL------ASLVEL 271

Query: 349 FLDSNEITGSLPN--FGGFSSLKRLSIANN 376
            L  N ++ SLP+  F     L  L + +N
Sbjct: 272 NLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.7 bits (215), Expect = 6e-18
 Identities = 61/332 (18%), Positives = 107/332 (32%), Gaps = 95/332 (28%)

Query: 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTLRGDL 329
           +      L   +P+      +   L L  N  + I   +  ++ +L+ L L  N+     
Sbjct: 59  VVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS----- 110

Query: 330 SEIIQNLSDGCTK--TSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKS 385
              I+ +  G      SL  L L  N +T  +P+  F   S L+ L + NN +  +I   
Sbjct: 111 ---IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSY 165

Query: 386 V-GQLVKLESLFL-HNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQ 443
              ++  L  L L     L  +   AF   L NL  L L   ++        +P      
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAF-EGLFNLKYLNLGMCNIKD------MPNLT--- 215

Query: 444 VNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGK 503
             L            L        L++S +   +  P  F   + +L    + N+Q+   
Sbjct: 216 -PLVG----------LE------ELEMSGNHFPEIRPGSFHGLS-SLKKLWVMNSQVS-- 255

Query: 504 LPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDY 563
                                       +  NA F  L+                  L  
Sbjct: 256 ---------------------------LIERNA-FDGLAS-----------------LVE 270

Query: 564 IDLSNNLLSGRLPDCWSQFDSLAILNLANNSF 595
           ++L++N LS    D ++    L  L+L +N +
Sbjct: 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 58/263 (22%), Positives = 101/263 (38%), Gaps = 33/263 (12%)

Query: 529 IPQ-LPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAI 587
           +PQ +P N  +LNL +N     I        H L+ + L  N +       ++   SL  
Sbjct: 69  VPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT 127

Query: 588 LNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEI 647
           L L +N        +  +L  L+ L L NN +       F     L  +DLG+      I
Sbjct: 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 648 PTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMT 707
                EGL NL  L+L        +P  L  L  ++ L++S N+   I P  F+  +++ 
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 708 HEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKL 767
                 L ++++  + +  ++                         L  +  L+L+ N L
Sbjct: 246 K-----LWVMNSQVSLIERNAF----------------------DGLASLVELNLAHNNL 278

Query: 768 GGEVPEEIMD-LAGLIALNLSRN 789
              +P ++   L  L+ L+L  N
Sbjct: 279 -SSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 2e-15
 Identities = 55/252 (21%), Positives = 93/252 (36%), Gaps = 38/252 (15%)

Query: 599 IPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNL 658
           +P  I    N + L+L  N +       F +   L ++ LG+N +  +I      GL +L
Sbjct: 69  VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASL 125

Query: 659 VVLSLKSNKFNGSIPLQ-LCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI 717
             L L  N     IP     +L+ ++ L L +N I  I    FN   ++       L L 
Sbjct: 126 NTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR-----LDLG 179

Query: 718 S-NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIM 776
                  ++  +                         L  +K L+L    +  +    + 
Sbjct: 180 ELKKLEYISEGAF----------------------EGLFNLKYLNLGMCNI--KDMPNLT 215

Query: 777 DLAGLIALNLSRNTLTGQITPK-IGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLS 835
            L GL  L +S N    +I P     L SL  L +  +Q      ++   L+ L  ++L+
Sbjct: 216 PLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274

Query: 836 YNNLSGKIPSGT 847
           +NNLS  +P   
Sbjct: 275 HNNLS-SLPHDL 285

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.0 bits (182), Expect = 8e-14
 Identities = 52/218 (23%), Positives = 76/218 (34%), Gaps = 39/218 (17%)

Query: 112 LQHLTYLDLSGNNFSGSSIPE--FIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDI 169
           L  L  L+L  N  +   IP   F   LSKL  L L N             +  L  LD+
Sbjct: 122 LASLNTLELFDNWLT--VIPSGAFEY-LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178

Query: 170 GFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTI 229
           G    +   +      L +L YL+L   N+      M  L+ L  L+ L +         
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKD----MPNLTPLVGLEELEM--------- 225

Query: 230 PSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHM 289
                              GN+    I P  F+  S+L +L  + ++Q+      AF  +
Sbjct: 226 ------------------SGNHFP-EIRPGSFHGLSSLKKL-WVMNSQVSLIERNAFDGL 265

Query: 290 PSLNTLFLASNQFREIPKS-LGNMCNLKSLTLSYNTLR 326
            SL  L LA N    +P      +  L  L L +N   
Sbjct: 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 44/224 (19%), Positives = 70/224 (31%), Gaps = 61/224 (27%)

Query: 631 SQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSN 690
           +Q + +   + GLS E+P  I     N   L+L  N           HL ++++L L  N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 691 NISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEY 750
           +I  I    FN   ++                                            
Sbjct: 110 SIRQIEVGAFNGLASL-------------------------------------------- 125

Query: 751 QSTLGLVKILDLSSNKLGGEVPEEI-MDLAGLIALNLSRNTLTGQITPKI-GQLKSLDFL 808
                    L+L  N L   +P      L+ L  L L  N +   I      ++ SL  L
Sbjct: 126 -------NTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRL 176

Query: 809 DLSRNQFFGSIPS-SLSQLSRLSVMDLSYNNLSGKIPSGTQLQS 851
           DL   +    I   +   L  L  ++L   N+   +P+ T L  
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVG 219

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 97.8 bits (244), Expect = 3e-22
 Identities = 49/215 (22%), Positives = 74/215 (34%), Gaps = 10/215 (4%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGS-LSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIG 170
           L  LT L LS N  S            + L YL LS       +      L +L+ LD  
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQ 109

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
            ++L           L +LIYLD+S ++     N   + + L SL+ L +          
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKMAGNSFQENFL 167

Query: 231 SSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMP 290
                     +L  + +    L   + P  FN  S+L  L N+  N         +  + 
Sbjct: 168 PD--IFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVL-NMSHNNFFSLDTFPYKCLN 223

Query: 291 SLNTLFLASNQFREIPKSL--GNMCNLKSLTLSYN 323
           SL  L  + N      K        +L  L L+ N
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 94.3 bits (235), Expect = 3e-21
 Identities = 59/248 (23%), Positives = 90/248 (36%), Gaps = 20/248 (8%)

Query: 162 SRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLI 221
           S    L++  N L S  +      L+ L  L LS + LS      Q      SLK L L 
Sbjct: 28  SSATRLELESNKLQSLPHGV-FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 222 SCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGS 281
              +  T+ S+         LE +    +NL       +F    NL+ L ++     + +
Sbjct: 87  FNGVI-TMSSN---FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL-DISHTHTRVA 141

Query: 282 IPEAFGHMPSLNTLFLASNQFRE--IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDG 339
               F  + SL  L +A N F+E  +P     + NL  L LS       L ++     + 
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC----QLEQLSPTAFNS 197

Query: 340 CTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSV--GQLVKLESL 395
            +  SL  L +  N    SL    +   +SL+ L  + N +  T  K         L  L
Sbjct: 198 LS--SLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFL 253

Query: 396 FLHNNSLR 403
            L  N   
Sbjct: 254 NLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.5 bits (233), Expect = 6e-21
 Identities = 56/270 (20%), Positives = 101/270 (37%), Gaps = 24/270 (8%)

Query: 116 TYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSL- 174
           T +  +    +  S+P  I   S  + L L + +           L++L  L +  N L 
Sbjct: 10  TEIRCNSKGLT--SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 175 ISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDL 234
             G   +     +SL YLDLSF+ +   S+       L+ L+ L     +L   +    +
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNLK-QMSEFSV 121

Query: 235 YLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE-AFGHMPSLN 293
              S  +L  + I   +     +  +FN  S+L  L  +  N  Q +     F  + +L 
Sbjct: 122 -FLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVL-KMAGNSFQENFLPDIFTELRNLT 178

Query: 294 TLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDS 352
            L L+  Q  ++   +  ++ +L+ L +S+N      +   + L       SL  L    
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL------NSLQVLDYSL 232

Query: 353 NEITGSLPN---FGGFSSLKRLSIANNRLN 379
           N I  +          SSL  L++  N   
Sbjct: 233 NHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.1 bits (211), Expect = 5e-18
 Identities = 51/248 (20%), Positives = 88/248 (35%), Gaps = 34/248 (13%)

Query: 604 GFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLS-GEIPTWIGEGLVNLVVLS 662
           G   +   L L +N+L       F   +QLT + L  NGLS     +    G  +L  L 
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 663 LKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKC-FNNFTAMTHEKGSNLTLISNYY 721
           L  N    ++      L  ++ LD   +N+  +     F +   + +     L +   + 
Sbjct: 85  LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY-----LDISHTHT 138

Query: 722 TSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEI-MDLAG 780
                                         + L  +++L ++ N        +I  +L  
Sbjct: 139 RVAFNGIF----------------------NGLSSLEVLKMAGNSFQENFLPDIFTELRN 176

Query: 781 LIALNLSRNTLTGQITPKI-GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNL 839
           L  L+LS+  L  Q++P     L SL  L++S N FF         L+ L V+D S N++
Sbjct: 177 LTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

Query: 840 SGKIPSGT 847
                   
Sbjct: 236 M-TSKKQE 242

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 59/295 (20%), Positives = 99/295 (33%), Gaps = 64/295 (21%)

Query: 529 IPQ-LPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGR--LPDCWSQFDSL 585
           +P  +P +A+ L L  NK   S+         +L  + LS+N LS +           SL
Sbjct: 22  VPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80

Query: 586 AILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELP--SFFTNGSQLTLMDLGKNGL 643
             L+L+ N     +  +   L+ L+ L   ++ L  ++   S F +   L  +D+     
Sbjct: 81  KYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHT 138

Query: 644 SGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQ-LCHLANVQILDLSSNNISGIIPKCFNN 702
                  I  GL +L VL +  N F  +        L N+  LDLS   +  + P  FN+
Sbjct: 139 R-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 703 FTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDL 762
            +++                                                     L++
Sbjct: 198 LSSLQV---------------------------------------------------LNM 206

Query: 763 SSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI--GQLKSLDFLDLSRNQF 815
           S N            L  L  L+ S N +      +       SL FL+L++N F
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.2 bits (201), Expect = 9e-17
 Identities = 55/272 (20%), Positives = 103/272 (37%), Gaps = 33/272 (12%)

Query: 291 SLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFL 350
           S   +   S     +P  +    +   L L  N L+     +   L      T L  L L
Sbjct: 8   SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKL------TQLTKLSL 59

Query: 351 DSNEITG---SLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVIS 407
            SN ++       +  G +SLK L ++ N +  T++ +   L +LE L   +++L+ +  
Sbjct: 60  SSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE 118

Query: 408 EAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRF-PKWLRNQNQIL 466
            +   +L NL  L ++     + F+  +     L  + +        F P        + 
Sbjct: 119 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 467 SLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKG-------KLPNLSSRFHPYRPGID 519
            LD+S   +    P  F + + +L   N+S+N            L +L          +D
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQV--------LD 229

Query: 520 ISSNQF----EGPIPQLPLNASFLNLSKNKFS 547
            S N      +  +   P + +FLNL++N F+
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 42/245 (17%), Positives = 85/245 (34%), Gaps = 34/245 (13%)

Query: 489 NLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFS- 547
           + +   L +N+++                  +    F+  + QL    + L+LS N  S 
Sbjct: 29  SATRLELESNKLQ-----------------SLPHGVFDK-LTQL----TKLSLSSNGLSF 66

Query: 548 GSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGF-- 605
                        L Y+DLS N +   +   +   + L  L+  +++   ++ +   F  
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLS 124

Query: 606 LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKS 665
           L+NL  L + +          F   S L ++ +  N         I   L NL  L L  
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 666 NKFNGSIPLQ-LCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSL 724
            +    +       L+++Q+L++S NN   +    +    ++       L    N+  + 
Sbjct: 185 CQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV-----LDYSLNHIMTS 238

Query: 725 AYDSL 729
               L
Sbjct: 239 KKQEL 243

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.4 bits (178), Expect = 7e-14
 Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 34/243 (13%)

Query: 467 SLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFE 526
            L++ ++ +       F   T  L+  +LS+N +                     S    
Sbjct: 32  RLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSF---------------KGCCSQSDF 75

Query: 527 GPIPQLPLNASFLNLSKNKFSG-SISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFD-- 583
           G    L     +L+LS N     S +FL      +L+++D  ++ L  ++ + +S F   
Sbjct: 76  G-TTSL----KYLDLSFNGVITMSSNFLGL---EQLEHLDFQHSNLK-QMSE-FSVFLSL 125

Query: 584 -SLAILNLANNSFFGKIPDSI-GFLKNLQSLSLYNNRLTGELPS-FFTNGSQLTLMDLGK 640
            +L  L++++        + I   L +L+ L +  N          FT    LT +DL +
Sbjct: 126 RNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 641 NGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCF 700
             L  ++       L +L VL++  N F          L ++Q+LD S N+I     +  
Sbjct: 185 CQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243

Query: 701 NNF 703
            +F
Sbjct: 244 QHF 246

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 51/201 (25%), Positives = 76/201 (37%), Gaps = 32/201 (15%)

Query: 104 TISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSR 163
           T+SS+ L L+ L +LD   +N    S      SL  L YL +S+T            LS 
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151

Query: 164 LQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISC 223
           L+VL +  NS       +  + L +L +LDLS   L + S      + L SL+ L +   
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNMS-- 207

Query: 224 DLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIP 283
                                     NN   S+  + +   ++L  L +   N +  S  
Sbjct: 208 -------------------------HNNFF-SLDTFPYKCLNSLQVL-DYSLNHIMTSKK 240

Query: 284 EAFGHMP-SLNTLFLASNQFR 303
           +   H P SL  L L  N F 
Sbjct: 241 QELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 8/118 (6%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGF 171
           L  L  L ++GN+F  + +P+    L  L++L LS  +     P    +LS LQVL++  
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208

Query: 172 NSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKL-DSLKALYL----ISCD 224
           N+  S +       L+SL  LD S +++       Q L     SL  L L     +C 
Sbjct: 209 NNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKK--QELQHFPSSLAFLNLTQNDFACT 263

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.8 bits (239), Expect = 8e-22
 Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 26/258 (10%)

Query: 214 SLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINL 273
           + + ++L    +   +P++     +  +L ++ +  N L   I    F   + L +L +L
Sbjct: 33  ASQRIFLHGNRIS-HVPAASF--RACRNLTILWLHSNVLA-RIDAAAFTGLALLEQL-DL 87

Query: 274 GSNQLQGSIP-EAFGHMPSLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRGDLSE 331
             N    S+    F  +  L+TL L     +E+       +  L+ L L  N L+    +
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 332 IIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQL 389
             ++L       +L  LFL  N I+ S+P   F G  SL RL +  NR+      +   L
Sbjct: 148 TFRDL------GNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 390 VKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT----LEFSHDWIPPFQLSQVN 445
            +L +L+L  N+L  + +EA  + L  L  L L DN             W+  F+ S   
Sbjct: 201 GRLMTLYLFANNLSALPTEAL-APLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSE 259

Query: 446 LGSCKIGPRFPKWLRNQN 463
           +  C      P+ L  ++
Sbjct: 260 V-PC----SLPQRLAGRD 272

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 81.6 bits (202), Expect = 5e-17
 Identities = 50/244 (20%), Positives = 81/244 (33%), Gaps = 39/244 (15%)

Query: 111 ILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIG 170
           I      + L GN  S      F      L+ L L +   A         L+ L+ LD+ 
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
            N+ +   +      L  L  L L    L +      +   L +L+ LYL          
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYL---------- 136

Query: 231 SSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMP 290
                              +N   ++    F    NL  L  L  N++      AF  + 
Sbjct: 137 ------------------QDNALQALPDDTFRDLGNLTHL-FLHGNRISSVPERAFRGLH 177

Query: 291 SLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLF 349
           SL+ L L  N+   +   +  ++  L +L L  N L    +E +  L       +L +L 
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL------RALQYLR 231

Query: 350 LDSN 353
           L+ N
Sbjct: 232 LNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.3 bits (178), Expect = 7e-14
 Identities = 50/234 (21%), Positives = 80/234 (34%), Gaps = 31/234 (13%)

Query: 584 SLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGL 643
           +   + L  N        S    +NL  L L++N L     + FT  + L  +DL  N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 644 SGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQ-LCHLANVQILDLSSNNISGIIPKCFNN 702
              +      GL  L  L L        +       LA +Q L L  N +  +    F +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 703 FTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDL 762
              +TH     L L  N  +S+   +                         L  +  L L
Sbjct: 152 LGNLTH-----LFLHGNRISSVPERAF----------------------RGLHSLDRLLL 184

Query: 763 SSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI-GQLKSLDFLDLSRNQF 815
             N++    P    DL  L+ L L  N L+  +  +    L++L +L L+ N +
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 47/200 (23%), Positives = 75/200 (37%), Gaps = 24/200 (12%)

Query: 112 LQHLTYLDLSGNNFSGSSIPE--FIGSLSKLSYLGLSNTEFAGPIPLQ-LGNLSRLQVLD 168
            ++LT L L  N  +   I    F G L+ L  L LS+      +       L RL  L 
Sbjct: 55  CRNLTILWLHSNVLA--RIDAAAFTG-LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111

Query: 169 IGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYL----ISCD 224
           +    L           L++L YL L  + L    +       L +L  L+L    IS  
Sbjct: 112 LDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNRIS-S 167

Query: 225 LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE 284
           +P              SL+ +++  N +   ++P  F     L+ L  L +N L  ++P 
Sbjct: 168 VPERA------FRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTL-YLFANNLS-ALPT 218

Query: 285 -AFGHMPSLNTLFLASNQFR 303
            A   + +L  L L  N + 
Sbjct: 219 EALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.3 bits (170), Expect = 8e-13
 Identities = 52/246 (21%), Positives = 80/246 (32%), Gaps = 56/246 (22%)

Query: 604 GFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSL 663
           G     Q + L+ NR++    + F     LT++ L  N L+  I      GL  L  L L
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL 87

Query: 664 KSNKFNGSIPLQ-LCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYT 722
             N    S+       L  +  L L    +  + P  F    A+ +     L L  N   
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY-----LYLQDNALQ 142

Query: 723 SLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLI 782
           +L  D+                         LG +  L L  N++               
Sbjct: 143 ALPDDTF----------------------RDLGNLTHLFLHGNRIS-------------- 166

Query: 783 ALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPS-SLSQLSRLSVMDLSYNNLSG 841
             ++      G        L SLD L L +N+    +   +   L RL  + L  NNLS 
Sbjct: 167 --SVPERAFRG--------LHSLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLS- 214

Query: 842 KIPSGT 847
            +P+  
Sbjct: 215 ALPTEA 220

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.2 bits (162), Expect = 8e-12
 Identities = 44/236 (18%), Positives = 76/236 (32%), Gaps = 41/236 (17%)

Query: 343 TSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSV-GQLVKLESLFLHN 399
            +   +FL  N I+  +P   F    +L  L + +N L   I+ +    L  LE L L +
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSD 89

Query: 400 NSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPP------FQLSQVNLGSCKIGP 453
           N+    +  A    L  L  L+L    L        + P        L  + L    +  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQE------LGPGLFRGLAALQYLYLQDNALQA 143

Query: 454 RFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHP 513
                 R+   +  L +  + IS      F     +L    L  N++             
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRLLLHQNRVA------------ 190

Query: 514 YRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNN 569
                 +  + F   + +L      L L  N  S ++          L Y+ L++N
Sbjct: 191 -----HVHPHAFRD-LGRL----MTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 41/222 (18%), Positives = 63/222 (28%), Gaps = 39/222 (17%)

Query: 630 GSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSS 689
                     + GL   +P  I         + L  N+ +           N+ IL L S
Sbjct: 10  NEPKVTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 690 NNISGIIPKCFNNFTAMTHEKGSNLTLISNYY-TSLAYDSLKTTKSYFDKAVLTWKGSQY 748
           N ++ I    F     +       L L  N    S+   +            L       
Sbjct: 66  NVLARIDAAAFTGLALLEQ-----LDLSDNAQLRSVDPATFHGLGR------LHT----- 109

Query: 749 EYQSTLGLVKILDLSSNKLGGEVPEEI-MDLAGLIALNLSRNTLTGQITPKI-GQLKSLD 806
                      L L    L  E+   +   LA L  L L  N L   +       L +L 
Sbjct: 110 -----------LHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLT 156

Query: 807 FLDLSRNQFFGSIPS-SLSQLSRLSVMDLSYNNLSGKIPSGT 847
            L L  N+   S+P  +   L  L  + L  N ++  +    
Sbjct: 157 HLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHA 196

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.0 bits (242), Expect = 8e-22
 Identities = 56/276 (20%), Positives = 95/276 (34%), Gaps = 31/276 (11%)

Query: 112 LQHLTYLDLSGNNFSGSSIPE--FIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDI 169
           LQHL  L L  N  S   I E  F   L KL  L +S         +     S L  L I
Sbjct: 77  LQHLYALVLVNNKIS--KIHEKAFSP-LRKLQKLYISKNHLVE---IPPNLPSSLVELRI 130

Query: 170 GFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISC---DLP 226
             N  I        S L ++  +++  + L            L  L  L +       +P
Sbjct: 131 HDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188

Query: 227 PTIPSS--DLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE 284
             +P +  +L+L+            N +  +I        S L  L  LG NQ++     
Sbjct: 189 KDLPETLNELHLD-----------HNKIQ-AIELEDLLRYSKLYRL-GLGHNQIRMIENG 235

Query: 285 AFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTS 344
           +   +P+L  L L +N+   +P  L ++  L+ + L  N +          +  G  +  
Sbjct: 236 SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295

Query: 345 LAWLFLDSNEIT-GSLPN--FGGFSSLKRLSIANNR 377
              + L +N +    +    F   +    +   N +
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.5 bits (225), Expect = 1e-19
 Identities = 64/391 (16%), Positives = 120/391 (30%), Gaps = 107/391 (27%)

Query: 291 SLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFL 350
            L  +  +    + +PK +    +   L L  N +     +  + L        L  L L
Sbjct: 34  HLRVVQCSDLGLKAVPKEISP--DTTLLDLQNNDISELRKDDFKGL------QHLYALVL 85

Query: 351 DSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISE 408
            +N+I+  +    F     L++L I+ N L   I         L  L +H+N +R V   
Sbjct: 86  VNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EI--PPNLPSSLVELRIHDNRIRKVPKG 141

Query: 409 AFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSL 468
            F S L N+  + +                                        N + + 
Sbjct: 142 VF-SGLRNMNCIEM--------------------------------------GGNPLENS 162

Query: 469 DISNSGISDTVPNWFWNQTYNLSFFNLSNNQI----KGKLPNLSSRFHPYRPGIDISSNQ 524
                      P  F      L++  +S  ++    K     L+         + +  N+
Sbjct: 163 GFE--------PGAFDGL--KLNYLRISEAKLTGIPKDLPETLNE--------LHLDHNK 204

Query: 525 FEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDS 584
               I  + L    L  SK                 L  + L +N +        S   +
Sbjct: 205 ----IQAIELED-LLRYSK-----------------LYRLGLGHNQIRMIENGSLSFLPT 242

Query: 585 LAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPS-------FFTNGSQLTLMD 637
           L  L+L NN    ++P  +  LK LQ + L+ N +T ++         F    +    + 
Sbjct: 243 LRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGIS 300

Query: 638 LGKNGLS-GEIPTWIGEGLVNLVVLSLKSNK 667
           L  N +   E+       + + + +   + K
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.3 bits (222), Expect = 3e-19
 Identities = 58/319 (18%), Positives = 107/319 (33%), Gaps = 46/319 (14%)

Query: 529 IPQ-LPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAI 587
           +P+ +  + + L+L  N  S  +          L  + L NN +S      +S    L  
Sbjct: 48  VPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106

Query: 588 LNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGL-SGE 646
           L ++ N    +IP       +L  L +++NR+       F+    +  +++G N L +  
Sbjct: 107 LYISKNHL-VEIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163

Query: 647 IPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAM 706
                 +GL  L  L +   K    IP  L     +  L L  N I  I  +    ++ +
Sbjct: 164 FEPGAFDGL-KLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKL 219

Query: 707 THEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNK 766
                  L L  N    +   SL    +                      ++ L L +NK
Sbjct: 220 YR-----LGLGHNQIRMIENGSLSFLPT----------------------LRELHLDNNK 252

Query: 767 LGGEVPEEIMDLAGLIALNLSRNTLTG------QITPKIGQLKSLDFLDLSRNQF-FGSI 819
           L   VP  + DL  L  + L  N +T              +    + + L  N   +  +
Sbjct: 253 L-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311

Query: 820 -PSSLSQLSRLSVMDLSYN 837
            P++   ++    +     
Sbjct: 312 QPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 59/360 (16%), Positives = 112/360 (31%), Gaps = 78/360 (21%)

Query: 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRGDL 329
           +      L+ ++P+     P    L L +N   E+ K     + +L +L L  N +    
Sbjct: 38  VQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH 94

Query: 330 SEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSV-GQ 388
            +    L        L  L++  N +   +P     SSL  L I +NR+   + K V   
Sbjct: 95  EKAFSPL------RKLQKLYISKNHLV-EIPP-NLPSSLVELRIHDNRIR-KVPKGVFSG 145

Query: 389 LVKLESLFLHNNSLRGV-ISEAFLSNLSNLTILYLADNSLTLEFSHDWIP---PFQLSQV 444
           L  +  + +  N L            L  L  L +++  LT       IP   P  L+++
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG------IPKDLPETLNEL 198

Query: 445 NLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK--- 501
           +L   KI     + L   +++  L + ++ I              L   +L NN++    
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLSRVP 257

Query: 502 ---GKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITG 558
                L  L          + + +N                 +  N F      +     
Sbjct: 258 AGLPDLKLLQV--------VYLHTNNIT-------------KVGVNDFCPVGFGVKRA-- 294

Query: 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR 618
              + I L NN +                  +   +F          + +  ++   N +
Sbjct: 295 -YYNGISLFNNPVP--------------YWEVQPATFRC--------VTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.7 bits (197), Expect = 4e-16
 Identities = 56/256 (21%), Positives = 90/256 (35%), Gaps = 27/256 (10%)

Query: 599 IPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNL 658
           +P  I    +   L L NN ++      F     L  + L  N +S +I       L  L
Sbjct: 48  VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKL 104

Query: 659 VVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS 718
             L +  N     IP  L   +++  L +  N I  +    F+    M       + +  
Sbjct: 105 QKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNC-----IEMGG 156

Query: 719 NYYTSL-----AYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPE 773
           N   +      A+D LK       +A LT        +     +  L L  NK+   +  
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLT-----GIPKDLPETLNELHLDHNKIQ-AIEL 210

Query: 774 EIMD-LAGLIALNLSRNTLTGQITPKI-GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSV 831
           E +   + L  L L  N +   I       L +L  L L  N+    +P+ L  L  L V
Sbjct: 211 EDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQV 268

Query: 832 MDLSYNNLSGKIPSGT 847
           + L  NN++ K+    
Sbjct: 269 VYLHTNNIT-KVGVND 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 99.3 bits (247), Expect = 1e-21
 Identities = 52/320 (16%), Positives = 106/320 (33%), Gaps = 62/320 (19%)

Query: 550 ISFLCSITGHKLDYIDLSNNLLSG---RLPDCWSQFDSLAILNLANNSFFGKIPDSIGFL 606
           +S +  I  +     +   N +SG        W +++  A+     N     + + +  +
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--I 58

Query: 607 KNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSN 666
                L L    L+  LP       Q+T++++ +N L   +P        +L  L    N
Sbjct: 59  NQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPA----SLEYLDACDN 110

Query: 667 KFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAY 726
           + + ++P     L   + LD+ +N ++ ++P+               +   +N  T L  
Sbjct: 111 RLS-TLPELPASL---KHLDVDNNQLT-MLPELPALLE--------YINADNNQLTMLP- 156

Query: 727 DSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNL 786
                                         +++L + +N+L   +PE       L AL++
Sbjct: 157 -------------------------ELPTSLEVLSVRNNQLT-FLPEL---PESLEALDV 187

Query: 787 SRNTLTGQITPKIGQLKSL----DFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK 842
           S N L   +     +         F     N+    IP ++  L     + L  N LS +
Sbjct: 188 STNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSR 245

Query: 843 IPSGTQLQSFSTSMYAGNEL 862
           I      Q+     +     
Sbjct: 246 IRESLSQQTAQPDYHGPRIY 265

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.6 bits (222), Expect = 1e-18
 Identities = 56/338 (16%), Positives = 110/338 (32%), Gaps = 58/338 (17%)

Query: 518 IDISSNQFEGPIPQLP--LNASFLNLSKNKFSGS-----ISFLCSITGHKLDYIDLSNNL 570
             +S N F   I        +++    K    G      +S L     ++   + L+   
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN 70

Query: 571 LSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNG 630
           LS  LPD  +    + +L +  N+    +P+      +L+ L   +NRL+  LP    + 
Sbjct: 71  LS-SLPD--NLPPQITVLEITQNAL-ISLPELPA---SLEYLDACDNRLS-TLPELPAS- 121

Query: 631 SQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSN 690
             L  +D+  N L+  +P         L  ++  +N+    +P     L   ++L + +N
Sbjct: 122 --LKHLDVDNNQLT-MLPELPA----LLEYINADNNQLT-MLPELPTSL---EVLSVRNN 170

Query: 691 NISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEY 750
            ++ + P+   +           L + +N   SL    ++   S                
Sbjct: 171 QLTFL-PELPESLE--------ALDVSTNLLESLPAVPVRNHHS---------------- 205

Query: 751 QSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDL 810
                         N++   +PE I+ L     + L  N L+ +I   + Q  +      
Sbjct: 206 ---EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

Query: 811 SRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQ 848
            R  F  S+           + D           S   
Sbjct: 262 PRIYF--SMSDGQQNTLHRPLADAVTAWFPENKQSDVS 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.9 bits (220), Expect = 2e-18
 Identities = 43/231 (18%), Positives = 87/231 (37%), Gaps = 37/231 (16%)

Query: 111 ILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIG 170
           ++   + L L+  N   SS+P+ +    +++ L ++       +P    +L  L   D  
Sbjct: 57  LINQFSELQLNRLNL--SSLPDNLP--PQITVLEITQNAL-ISLPELPASLEYLDACDNR 111

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
            ++L            +SL +LD+  + L+       +L  ++      L    LP    
Sbjct: 112 LSTL--------PELPASLKHLDVDNNQLTMLPELPALLEYIN-ADNNQLTM--LPELP- 159

Query: 231 SSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMP 290
                    TSLEV+ +  N LT      L  +  +L  L ++ +N L+ S+P       
Sbjct: 160 ---------TSLEVLSVRNNQLTF-----LPELPESLEAL-DVSTNLLE-SLPAVPVRNH 203

Query: 291 SLNT----LFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLS 337
                        N+   IP+++ ++    ++ L  N L   + E +   +
Sbjct: 204 HSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.6 bits (209), Expect = 5e-17
 Identities = 70/417 (16%), Positives = 129/417 (30%), Gaps = 94/417 (22%)

Query: 110 LILQHLTYLDLSGNNFSGS------SIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSR 163
           ++L       LS N+F  +                K +  G +  E    +   L  +++
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQ 60

Query: 164 LQVLDIGFNSLIS-GENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLIS 222
              L +   +L S  +NL        +  L+++ + L                       
Sbjct: 61  FSELQLNRLNLSSLPDNL-----PPQITVLEITQNALIS--------------------- 94

Query: 223 CDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSI 282
             LP              SLE +    N L+      L  + ++L  L ++ +NQL   +
Sbjct: 95  --LPELP----------ASLEYLDACDNRLST-----LPELPASLKHL-DVDNNQLT-ML 135

Query: 283 PEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTK 342
           PE       L  +   +NQ   +P+      +L+ L++  N L   L E+ ++L      
Sbjct: 136 PELPA---LLEYINADNNQLTMLPELPT---SLEVLSVRNNQLT-FLPELPESLE----- 183

Query: 343 TSLAWLFLDSNEITGSLPN-FGGFSSLKR----LSIANNRLNGTINKSVGQLVKLESLFL 397
                L + +N +  SLP         +          NR+   I +++  L    ++ L
Sbjct: 184 ----ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL 237

Query: 398 HNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPK 457
            +N L    S     +LS  T       +                Q N     +      
Sbjct: 238 EDNPL----SSRIRESLSQQT-------AQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286

Query: 458 WLRNQNQILSLDISNSGISDTVPNWFW------NQTYNLSFFNLSNNQIKGKLPNLS 508
           W     Q     I ++   +   N F       + T +    +    Q+   L  LS
Sbjct: 287 WFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLS 343

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.2 bits (200), Expect = 5e-16
 Identities = 73/431 (16%), Positives = 134/431 (31%), Gaps = 63/431 (14%)

Query: 460 RNQNQILSLDISNSGISDTVPNWF--WNQTYNLSFFNLSNNQI-----KGKLPNLSSRFH 512
            N N  LS +   + IS T  ++F  W++    +    + N+      +  +   S    
Sbjct: 7   INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSE--- 63

Query: 513 PYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLS 572
                + ++          LP   + L +++N      S         L+Y+D  +N LS
Sbjct: 64  -----LQLNRLNLSSLPDNLPPQITVLEITQNALI---SLPELPAS--LEYLDACDNRLS 113

Query: 573 GRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLK-----------------NLQSLSLY 615
             LP+      SL  L++ NN     +P+    L+                 +L+ LS+ 
Sbjct: 114 -TLPE---LPASLKHLDVDNNQL-TMLPELPALLEYINADNNQLTMLPELPTSLEVLSVR 168

Query: 616 NNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNL----VVLSLKSNKFNGS 671
           NN+LT  LP    +   L  +D+  N L   +P        +     +    + N+    
Sbjct: 169 NNQLT-FLPELPES---LEALDVSTNLLE-SLPAVPVR-NHHSEETEIFFRCRENRIT-H 221

Query: 672 IPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKT 731
           IP  +  L     + L  N +S  I +  +  TA     G  +        S++     T
Sbjct: 222 IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF------SMSDGQQNT 275

Query: 732 TKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTL 791
                  AV  W     +   +                   + + D       +  R   
Sbjct: 276 LHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFRE-- 333

Query: 792 TGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQS 851
             Q+   + +L +   L             S      L+  +L    L  +   G     
Sbjct: 334 --QVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDND 391

Query: 852 FSTSMYAGNEL 862
               +  G E+
Sbjct: 392 TGALLSLGREM 402

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.5 bits (188), Expect = 2e-14
 Identities = 55/282 (19%), Positives = 102/282 (36%), Gaps = 33/282 (11%)

Query: 375 NNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHD 434
            N ++GT         K E   L   +    +S      ++  + L L   +L+     D
Sbjct: 19  YNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLP-D 76

Query: 435 WIPPFQLSQVNLGSCKIG--PRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSF 492
            +PP Q++ + +    +   P  P  L        LD  ++ +S T+P    +    L  
Sbjct: 77  NLPP-QITVLEITQNALISLPELPASLEY------LDACDNRLS-TLPELPAS----LKH 124

Query: 493 FNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISF 552
            ++ NNQ+   LP L +        I+  +NQ    +P+LP +   L++  N+ +     
Sbjct: 125 LDVDNNQLT-MLPELPALLE----YINADNNQLTM-LPELPTSLEVLSVRNNQLTFLPEL 178

Query: 553 LCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSL----AILNLANNSFFGKIPDSIGFLKN 608
             S     L+ +D+S NLL   LP    +               N     IP++I  L  
Sbjct: 179 PES-----LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDP 231

Query: 609 LQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTW 650
             ++ L +N L+  +    +  +        +   S      
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 41/242 (16%), Positives = 70/242 (28%), Gaps = 58/242 (23%)

Query: 630 GSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIP-LQLCHLANVQILDLS 688
            +  +L                          +L     N ++  L+ C +     L L+
Sbjct: 8   NNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLN 67

Query: 689 SNNISGIIPKCFNNFTAMTHEKGSNLT---LISNYYTSLAYDSLKTTKSYFDKAVLTWKG 745
             N+S  +P                +T   +  N   SL                     
Sbjct: 68  RLNLS-SLPDNL----------PPQITVLEITQNALISLP-------------------- 96

Query: 746 SQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSL 805
                      ++ LD   N+L   +PE     A L  L++  N LT  +      L+ +
Sbjct: 97  ------ELPASLEYLDACDNRLS-TLPELP---ASLKHLDVDNNQLT-MLPELPALLEYI 145

Query: 806 DFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSG-TQLQSFSTSMYAGNELCG 864
           +      NQ    +P   + L  L    +  N L+  +P     L++   S    N L  
Sbjct: 146 N---ADNNQL-TMLPELPTSLEVL---SVRNNQLT-FLPELPESLEALDVS---TNLLES 194

Query: 865 LP 866
           LP
Sbjct: 195 LP 196

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 32/209 (15%)

Query: 225 LPPTIPSS--DLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSI 282
           +P  IP+    L L S           N L+ S+    F+  + L  L  L  N+LQ ++
Sbjct: 31  IPSNIPADTKKLDLQS-----------NKLS-SLPSKAFHRLTKLRLL-YLNDNKLQ-TL 76

Query: 283 PE-AFGHMPSLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYNTLRGDLSEIIQNLSDGC 340
           P   F  + +L TL++  N+ + +P  +   + NL  L L  N         +++L    
Sbjct: 77  PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ--------LKSLPPRV 128

Query: 341 --TKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLF 396
             + T L +L L  NE+  SLP   F   +SLK L + NN+L      +  +L +L++L 
Sbjct: 129 FDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187

Query: 397 LHNNSLRGVISEAFLSNLSNLTILYLADN 425
           L NN L+ V   AF  +L  L +L L +N
Sbjct: 188 LDNNQLKRVPEGAF-DSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 57/208 (27%), Positives = 85/208 (40%), Gaps = 32/208 (15%)

Query: 608 NLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNK 667
           + + L L +N+L+      F   ++L L+ L  N L   +P  I + L NL  L +  NK
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 668 FNGSIPLQL-CHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAY 726
              ++P+ +   L N+  L L  N +  + P+ F++ T +T+     L+L  N   SL  
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY-----LSLGYNELQSLPK 150

Query: 727 DSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD-LAGLIALN 785
                    FDK               L  +K L L +N+L   VPE   D L  L  L 
Sbjct: 151 GV-------FDK---------------LTSLKELRLYNNQL-KRVPEGAFDKLTELKTLK 187

Query: 786 LSRNTLTGQITPKIGQLKSLDFLDLSRN 813
           L  N L          L+ L  L L  N
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 17/177 (9%)

Query: 561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGF--LKNLQSLSLYNNR 618
              +DL +N LS      + +   L +L L +N     +P  I F  LKNL++L + +N+
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGI-FKELKNLETLWVTDNK 96

Query: 619 LTGELPS-FFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLC 677
           L   LP   F     L  + L +N L   +P  + + L  L  LSL  N+   S+P  + 
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153

Query: 678 -HLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSL---AYDSLK 730
             L +++ L L +N +  +    F+  T +       L L +N    +   A+DSL+
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKT-----LKLDNNQLKRVPEGAFDSLE 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 14/119 (11%)

Query: 314 NLKSLTLSYNTLRGDLSEIIQNLSDGCTK--TSLAWLFLDSNEITGSLPN--FGGFSSLK 369
           + K L L  N         + +L        T L  L+L+ N++  +LP   F    +L+
Sbjct: 38  DTKKLDLQSNK--------LSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLE 88

Query: 370 RLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
            L + +N+L         QLV L  L L  N L+ +    F  +L+ LT L L  N L 
Sbjct: 89  TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF-DSLTKLTYLSLGYNELQ 146

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 52/215 (24%), Positives = 77/215 (35%), Gaps = 62/215 (28%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFI-GSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIG 170
           L  L  L L+ N     ++P  I   L  L  L +++               +LQ L IG
Sbjct: 60  LTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDN--------------KLQALPIG 103

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
                          L +L  L L  + L        V   L  L  L L          
Sbjct: 104 V-----------FDQLVNLAELRLDRNQLKSLPPR--VFDSLTKLTYLSL---------- 140

Query: 231 SSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE-AFGHM 289
                              N L  S+   +F+  ++L EL  L +NQL+  +PE AF  +
Sbjct: 141 -----------------GYNELQ-SLPKGVFDKLTSLKEL-RLYNNQLK-RVPEGAFDKL 180

Query: 290 PSLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYN 323
             L TL L +NQ + +P+ +  ++  LK L L  N
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 34/171 (19%)

Query: 680 ANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKA 739
           A+ + LDL SN +S +  K F+  T +       L L  N   +L           F + 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRL-----LYLNDNKLQTLPAGI-------FKE- 83

Query: 740 VLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD-LAGLIALNLSRNTLTGQITPK 798
                         L  ++ L ++ NKL   +P  + D L  L  L L RN L   + P+
Sbjct: 84  --------------LKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLK-SLPPR 127

Query: 799 I-GQLKSLDFLDLSRNQFFGSIPSSL-SQLSRLSVMDLSYNNLSGKIPSGT 847
           +   L  L +L L  N+   S+P  +  +L+ L  + L  N L  ++P G 
Sbjct: 128 VFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGA 176

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 50/212 (23%), Positives = 81/212 (38%), Gaps = 49/212 (23%)

Query: 467 SLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-------GKLPNLSSRFHPYRPGID 519
            LD+ ++ +S      F   T  L    L++N+++        +L NL +        + 
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLET--------LW 91

Query: 520 ISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCW 579
           ++ N+    +  LP+   F  L                   L  + L  N L   LP   
Sbjct: 92  VTDNK----LQALPIGV-FDQLVN-----------------LAELRLDRNQLK-SLPP-- 126

Query: 580 SQFDSLA---ILNLANNSFFGKIPDSIGF--LKNLQSLSLYNNRLTGELPSFFTNGSQLT 634
             FDSL     L+L  N     +P  + F  L +L+ L LYNN+L       F   ++L 
Sbjct: 127 RVFDSLTKLTYLSLGYNEL-QSLPKGV-FDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184

Query: 635 LMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSN 666
            + L  N L   +P    + L  L +L L+ N
Sbjct: 185 TLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 90.9 bits (226), Expect = 4e-20
 Identities = 55/209 (26%), Positives = 83/209 (39%), Gaps = 36/209 (17%)

Query: 225 LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE 284
           LPP +P     L+          L  NL  +         + L +L NL   +L   +  
Sbjct: 25  LPPDLPKDTTILH----------LSENLLYTFSLATLMPYTRLTQL-NLDRAELT-KLQ- 71

Query: 285 AFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTK-- 342
             G +P L TL L+ NQ + +P     +  L  L +S+N         + +L  G  +  
Sbjct: 72  VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR--------LTSLPLGALRGL 123

Query: 343 TSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRL----NGTINKSVGQLVKLESLF 396
             L  L+L  NE+  +LP         L++LS+ANN L     G +N     L  L++L 
Sbjct: 124 GELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG----LENLDTLL 178

Query: 397 LHNNSLRGVISEAFLSNLSNLTILYLADN 425
           L  NSL  +    F      L   +L  N
Sbjct: 179 LQENSLYTIPKGFF--GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 46/254 (18%), Positives = 81/254 (31%), Gaps = 59/254 (23%)

Query: 584 SLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGL 643
           S   +N    +    +P  +   K+   L L  N L     +     ++LT ++L +  L
Sbjct: 11  SHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 644 SGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNF 703
           + ++       L  L  L L  N+   S+PL    L  + +LD+S N ++ +        
Sbjct: 68  T-KLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 704 TAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLS 763
             +       L L  N   +L                                ++ L L+
Sbjct: 124 GELQE-----LYLKGNELKTLPPGL-------LTP---------------TPKLEKLSLA 156

Query: 764 SNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSL 823
           +N L  E+P  +++                        L++LD L L  N    +IP   
Sbjct: 157 NNNLT-ELPAGLLN-----------------------GLENLDTLLLQENS-LYTIPKGF 191

Query: 824 SQLSRLSVMDLSYN 837
                L    L  N
Sbjct: 192 FGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 44/215 (20%), Positives = 61/215 (28%), Gaps = 42/215 (19%)

Query: 290 PSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLF 349
            S   +         +P  L    +   L LS N L       +         T L  L 
Sbjct: 10  ASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPY------TRLTQLN 61

Query: 350 LDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEA 409
           LD  E+T  L   G    L  L +++N+L  ++      L  L  L +  N L  +   A
Sbjct: 62  LDRAELT-KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 410 FLSNLSNLTILYLADNSLTLEFSHDWIPP--FQLSQVNLGSCKIGPRFPKWLR-NQNQIL 466
               L  L  LYL  N L        +PP         L          + L    N + 
Sbjct: 120 L-RGLGELQELYLKGNELKT------LPPGLLT-PTPKL----------EKLSLANNNLT 161

Query: 467 SLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK 501
            L                    NL    L  N + 
Sbjct: 162 ELP----------AGLLNGLE-NLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 8/176 (4%)

Query: 529 IPQ-LPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAI 587
           +P  LP + + L+LS+N    + S    +   +L  ++L    L+ +L         L  
Sbjct: 25  LPPDLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGT 81

Query: 588 LNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEI 647
           L+L++N     +P     L  L  L +  NRLT           +L  + L  N L   +
Sbjct: 82  LDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139

Query: 648 PTWIGEGLVNLVVLSLKSNKFNGSIPLQLC-HLANVQILDLSSNNISGIIPKCFNN 702
           P  +      L  LSL +N     +P  L   L N+  L L  N++  I    F +
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.8 bits (153), Expect = 9e-11
 Identities = 48/213 (22%), Positives = 70/213 (32%), Gaps = 62/213 (29%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGF 171
              LT L+L       + +    G+L  L  L LS+               +LQ L +  
Sbjct: 54  YTRLTQLNLDRAEL--TKLQVD-GTLPVLGTLDLSHN--------------QLQSLPLLG 96

Query: 172 NSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPS 231
                         L +L  LD+SF+ L+        L  L  L+ LYL           
Sbjct: 97  ------------QTLPALTVLDVSFNRLTSLPL--GALRGLGELQELYL----------- 131

Query: 232 SDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE-AFGHMP 290
                            GN L  ++ P L   +  L +L +L +N L   +P      + 
Sbjct: 132 ----------------KGNELK-TLPPGLLTPTPKLEKL-SLANNNLT-ELPAGLLNGLE 172

Query: 291 SLNTLFLASNQFREIPKSLGNMCNLKSLTLSYN 323
           +L+TL L  N    IPK       L    L  N
Sbjct: 173 NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 41/178 (23%), Positives = 63/178 (35%), Gaps = 40/178 (22%)

Query: 680 ANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKA 739
            +  IL LS N +          +T +T      L L     T L               
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQ-----LNLDRAELTKL---------QVDGT- 75

Query: 740 VLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI 799
                         L ++  LDLS N+L   +P     L  L  L++S N LT  +    
Sbjct: 76  --------------LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGA 119

Query: 800 -GQLKSLDFLDLSRNQFFGSIPSSL-SQLSRLSVMDLSYNNLSGKIPSG-----TQLQ 850
              L  L  L L  N+   ++P  L +   +L  + L+ NNL+ ++P+G       L 
Sbjct: 120 LRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD 175

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.4 bits (234), Expect = 4e-20
 Identities = 49/309 (15%), Positives = 106/309 (34%), Gaps = 33/309 (10%)

Query: 158 LGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKA 217
               +     ++   S+    +    + L+S+  +  + S++         +  L ++  
Sbjct: 17  DDAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDIKSVQG----IQYLPNVTK 69

Query: 218 LYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSS--NLVELINLGS 275
           L+L    L    P ++L      +L  + +  N + D     L ++     L  L +L  
Sbjct: 70  LFLNGNKLTDIKPLTNL-----KNLGWLFLDENKIKD-----LSSLKDLKKLKSL-SLEH 118

Query: 276 NQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQN 335
           N +   I     H+P L +L+L +N+  +I   L  +  L +L+L  N         I +
Sbjct: 119 NGIS-DI-NGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQ--------ISD 167

Query: 336 LSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESL 395
           +      T L  L+L  N I+  L    G  +L  L + +             LV   ++
Sbjct: 168 IVPLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 396 FLHNNSLRGVISEAFLSNLSNLTILY-LADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPR 454
              + SL      +   +     + + L + +  + F          ++         P 
Sbjct: 227 KNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPL 286

Query: 455 FPKWLRNQN 463
              +  + +
Sbjct: 287 KEVYTVSYD 295

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.1 bits (184), Expect = 5e-14
 Identities = 45/229 (19%), Positives = 79/229 (34%), Gaps = 52/229 (22%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSN---TEFAGPIPLQLGNLSRLQVLD 168
           L  +  +  + ++    S+ + I  L  ++ L L+    T+        L NL  L  L 
Sbjct: 42  LNSIDQIIANNSDI--KSV-QGIQYLPNVTKLFLNGNKLTDIKP-----LTNLKNLGWLF 93

Query: 169 IGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPT 228
           +  N +   ++L  L  L  L  L L  + +S  +     L  L  L++LYL        
Sbjct: 94  LDENKI---KDLSSLKDLKKLKSLSLEHNGISDING----LVHLPQLESLYL-------- 138

Query: 229 IPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGH 288
                     +  +  I +L                + L  L +L  NQ+   I      
Sbjct: 139 ---------GNNKITDITVLSRL-------------TKLDTL-SLEDNQIS-DI-VPLAG 173

Query: 289 MPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLS 337
           +  L  L+L+ N   ++ ++L  + NL  L L              NL 
Sbjct: 174 LTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 221

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.5 bits (172), Expect = 1e-12
 Identities = 59/310 (19%), Positives = 107/310 (34%), Gaps = 59/310 (19%)

Query: 459 LRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-----GKLPNLSSRFHP 513
                + +  ++    ++D V     N+  ++     +N+ IK       LPN++     
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGIQYLPNVTK---- 69

Query: 514 YRPGIDISSNQFE--GPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLL 571
               + ++ N+     P+  L  N  +L L +NK    +S L  +   KL  + L +N +
Sbjct: 70  ----LFLNGNKLTDIKPLTNLK-NLGWLFLDENKIK-DLSSLKDLK--KLKSLSLEHNGI 121

Query: 572 SGRLPDCWSQFDSLAILNLANNSFFGKIPD--SIGFLKNLQSLSLYNNRLTGELPSFFTN 629
           S  +         L  L L NN    KI D   +  L  L +LSL +N+++ ++      
Sbjct: 122 S-DINGL-VHLPQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQIS-DIVPL--- 171

Query: 630 GSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSS 689
                                   GL  L  L L  N  +  +   L  L N+ +L+L S
Sbjct: 172 -----------------------AGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS 206

Query: 690 NNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYE 749
                      +N       K ++ +L++    S   D  K    +            + 
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFY 266

Query: 750 YQSTLGLVKI 759
              T+G  K 
Sbjct: 267 QPVTIGKAKA 276

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.3 bits (148), Expect = 1e-09
 Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 48/234 (20%)

Query: 609 LQSLSLYNNRLT--GELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSN 666
           +      +  +       +F    ++    +L K  ++  +       L ++  +   ++
Sbjct: 1   MGETITVSTPIKQIFPDDAF----AETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNS 53

Query: 667 KFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAY 726
                  +Q  +L NV  L L+ N ++ I P    N   +       L L  N    L  
Sbjct: 54  DIKSVQGIQ--YLPNVTKLFLNGNKLTDIKP--LTNLKNLGW-----LFLDENKIKDL-- 102

Query: 727 DSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNL 786
                                      L  +K L L  N +       ++ L  L +L L
Sbjct: 103 ----------------------SSLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYL 138

Query: 787 SRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLS 840
             N +T  IT  + +L  LD L L  NQ   S    L+ L++L  + LS N++S
Sbjct: 139 GNNKIT-DITV-LSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.9 bits (147), Expect = 1e-09
 Identities = 56/336 (16%), Positives = 100/336 (29%), Gaps = 50/336 (14%)

Query: 528 PIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAI 587
           P           NL K   +        +    +D I  +N+ +   +        ++  
Sbjct: 16  PDDAFA-ETIKDNLKKKSVT-DAVTQNELN--SIDQIIANNSDIK-SVQGI-QYLPNVTK 69

Query: 588 LNLANNSFFGKIPD--SIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSG 645
           L L  N    K+ D   +  LKNL  L L  N++  +L S   +  +L  + L  NG+S 
Sbjct: 70  LFLNGN----KLTDIKPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS- 122

Query: 646 EIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTA 705
           +I       L  L  L L +NK      L    L  +  L L  N IS I+P      T 
Sbjct: 123 DING--LVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTK 176

Query: 706 MTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSN 765
           + +     L L  N+ + L                           + L  + +L+L S 
Sbjct: 177 LQN-----LYLSKNHISDL------------------------RALAGLKNLDVLELFSQ 207

Query: 766 KLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQ 825
           +   +      +L     +  +  +L                +     +F   +     Q
Sbjct: 208 ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQ 267

Query: 826 LSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNE 861
              +      ++    +        S+         
Sbjct: 268 PVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKT 303

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.4 bits (143), Expect = 4e-09
 Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 23/195 (11%)

Query: 107 SSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQV 166
             L  L++L +L L  N      +   +  L KL  L L +   +    L   +L +L+ 
Sbjct: 81  KPLTNLKNLGWLFLDENKIK--DL-SSLKDLKKLKSLSLEHNGISDINGLV--HLPQLES 135

Query: 167 LDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLP 226
           L +G N +    ++  LS L+ L  L L  + +S        L+ L  L+ LYL    + 
Sbjct: 136 LYLGNNKI---TDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHI- 187

Query: 227 PTIPSSDL-YLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEA 285
                SDL  L    +L+V+ +      +          SNLV    + +       PE 
Sbjct: 188 -----SDLRALAGLKNLDVLELFSQECLNKPINHQ----SNLVVPNTVKNTDGSLVTPEI 238

Query: 286 FGHMPSLNTLFLASN 300
                      +  +
Sbjct: 239 ISDDGDYEKPNVKWH 253

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 90.5 bits (225), Expect = 4e-19
 Identities = 73/499 (14%), Positives = 135/499 (27%), Gaps = 107/499 (21%)

Query: 242 LEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQ 301
               V     +  +       +++  +  ++  ++ +   +      +  L  L   SN 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLAT--LTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNN 75

Query: 302 FREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN 361
              +   L    NL  L    N L    +  +  L      T L +L  D+N++T    +
Sbjct: 76  ITTLD--LSQNTNLTYLACDSNKLT---NLDVTPL------TKLTYLNCDTNKLTKL--D 122

Query: 362 FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILY 421
                 L  L+ A N L       V    +L  L  H N     I++  ++  + LT L 
Sbjct: 123 VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKK---ITKLDVTPQTQLTTLD 176

Query: 422 LADNSLT-LEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVP 480
            + N +T L+ S        L+++N  +              N I  LD++         
Sbjct: 177 CSFNKITELDVSQ----NKLLNRLNCDT--------------NNITKLDLNQ-------- 210

Query: 481 NWFWNQTYNLSFFNLSNNQIK----GKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNA 536
                    L+F + S+N++       L  L+          D S N             
Sbjct: 211 ------NIQLTFLDCSSNKLTEIDVTPLTQLTY--------FDCSVNPLTELDVSTLSKL 256

Query: 537 SFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFF 596
           + L+  +      I    +    +L Y           L    +    L +L+       
Sbjct: 257 TTLHCIQTDLL-EIDLTHNT---QLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGI- 309

Query: 597 GKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLV 656
                 +     L  L L N  LT EL                                 
Sbjct: 310 --TELDLSQNPKLVYLYLNNTELT-ELDV---------------------------SHNT 339

Query: 657 NLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTL 716
            L  LS  +          +  +  +     +      +  +   N +         L  
Sbjct: 340 KLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQ 397

Query: 717 ISNYYTSLAYDSLKTTKSY 735
             N       D     ++ 
Sbjct: 398 FGNPMNIEPGDGGVYDQAT 416

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 89.4 bits (222), Expect = 9e-19
 Identities = 77/476 (16%), Positives = 146/476 (30%), Gaps = 85/476 (17%)

Query: 116 TYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLI 175
           + +  +    +  +I      L+ L+ L   N+       +    L+ L  L    N++ 
Sbjct: 22  SEVAAAFEMQATDTIS--EEQLATLTSLDCHNSSITDMTGI--EKLTGLTKLICTSNNIT 77

Query: 176 SGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLY 235
           + +    LS  ++L YL    + L+        ++ L  L  L   +  L      + L 
Sbjct: 78  TLD----LSQNTNLTYLACDSNKLTNLD-----VTPLTKLTYLNCDTNKL------TKLD 122

Query: 236 LNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTL 295
           ++ +  L  +    N LT+          S+  +L  L  +  +            L TL
Sbjct: 123 VSQNPLLTYLNCARNTLTE-------IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTL 175

Query: 296 FLASNQFREIPKSLGNMCNLKSLTLSYNTLRG-DLSEIIQ----NLS-------DGCTKT 343
             + N+  E+   +     L  L    N +   DL++ IQ    + S       D    T
Sbjct: 176 DCSFNKITELD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLT 233

Query: 344 SLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLR 403
            L +     N +T  L      S L  L      L       +    +L           
Sbjct: 234 QLTYFDCSVNPLT-ELD-VSTLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQAEGCRK- 287

Query: 404 GVISEAFLSNLSNLTILYLADNSLT-LEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQ 462
             I E  +++ + L +L      +T L+ S       +L  + L              N 
Sbjct: 288 --IKELDVTHNTQLYLLDCQAAGITELDLSQ----NPKLVYLYL--------------NN 327

Query: 463 NQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISS 522
            ++  LD+S+                 L   +  N  I+    ++     P       + 
Sbjct: 328 TELTELDVSH--------------NTKLKSLSCVNAHIQ-DFSSVGK--IPALNNNFEAE 370

Query: 523 NQFEG-PIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPD 577
            Q    P   L  N+  + +S +      + +    G    Y   +N +    L  
Sbjct: 371 GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLST 426

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.3 bits (183), Expect = 5e-14
 Identities = 81/479 (16%), Positives = 147/479 (30%), Gaps = 104/479 (21%)

Query: 368 LKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSL 427
                 A   +  T   S  QL  L SL  HN+S+  +     +  L+ LT L    N++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNNI 76

Query: 428 T-LEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQ 486
           T L+ S        L+ +   S              N++ +LD++               
Sbjct: 77  TTLDLSQ----NTNLTYLACDS--------------NKLTNLDVTPLT------------ 106

Query: 487 TYNLSFFNLSNNQIK----GKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLS 542
              L++ N   N++      + P L+         ++ + N             + L+  
Sbjct: 107 --KLTYLNCDTNKLTKLDVSQNPLLTY--------LNCARNTLTEIDVSHNTQLTELDCH 156

Query: 543 KNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDS 602
            NK    +         +L  +D S N ++  L    SQ   L  LN   N+   K+   
Sbjct: 157 LNKKITKLDVTPQT---QLTTLDCSFNKITE-LDV--SQNKLLNRLNCDTNNIT-KLD-- 207

Query: 603 IGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLS 662
           +     L  L   +N+LT E+    T  +QLT  D   N L+ E+       L  L  L 
Sbjct: 208 LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVS---TLSKLTTLH 260

Query: 663 LKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYT 722
                      + L H   +             +    N          + L L+     
Sbjct: 261 CIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELDVTHN----------TQLYLLDCQAA 307

Query: 723 SLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLI 782
            +    L                      S    +  L L++ +L  E+   +     L 
Sbjct: 308 GITELDL----------------------SQNPKLVYLYLNNTELT-ELD--VSHNTKLK 342

Query: 783 ALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSG 841
           +L+     +       +G++ +L+    +  Q       +L+  S    +     +  G
Sbjct: 343 SLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.8 bits (135), Expect = 4e-08
 Identities = 53/313 (16%), Positives = 99/313 (31%), Gaps = 63/313 (20%)

Query: 560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRL 619
            L  +D  N+ ++  +     +   L  L   +N+    +   +    NL  L+  +N+L
Sbjct: 43  TLTSLDCHNSSITD-MTGI-EKLTGLTKLICTSNNI-TTLD--LSQNTNLTYLACDSNKL 97

Query: 620 TGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHL 679
           T  L    T  ++LT ++   N L+    +        L  L+   N       + + H 
Sbjct: 98  T-NLD--VTPLTKLTYLNCDTNKLTKLDVS----QNPLLTYLNCARNTLT---EIDVSHN 147

Query: 680 ANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKA 739
             +  LD   N     +               + LT +   +  +    +          
Sbjct: 148 TQLTELDCHLNKKITKLDVTPQ----------TQLTTLDCSFNKITELDV---------- 187

Query: 740 VLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIAL---NLSRNTLTGQIT 796
                       S   L+  L+  +N +        +DL   I L   + S N LT    
Sbjct: 188 ------------SQNKLLNRLNCDTNNI------TKLDLNQNIQLTFLDCSSNKLT---E 226

Query: 797 PKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSM 856
             +  L  L + D S N       S+LS+L+ L        +L  +I      Q      
Sbjct: 227 IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTDLL-EIDLTHNTQLIYFQA 282

Query: 857 YAGNELCGLPLPN 869
               ++  L + +
Sbjct: 283 EGCRKIKELDVTH 295

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 20/158 (12%), Positives = 45/158 (28%), Gaps = 10/158 (6%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGF 171
              L  LD      +   +   +    KL YL L+NTE      L + + ++L+ L    
Sbjct: 296 NTQLYLLDCQAAGIT--ELD--LSQNPKLVYLYLNNTELTE---LDVSHNTKLKSLSCVN 348

Query: 172 NSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPS 231
             +   ++   +  + +L     +              + L    +  L+     P    
Sbjct: 349 AHI---QDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405

Query: 232 SDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVE 269
                    +   I     +  +    + F   +  + 
Sbjct: 406 PGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIV 443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 23/186 (12%)

Query: 657 NLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTL 716
           N       + +   +  +    LA +  LD  +++I+ +        T +T      L  
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTK-----LIC 71

Query: 717 ISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKI--LDLSSNKLGGEVPEE 774
            SN  T+L                L    ++        L K+  L+  +NKL      +
Sbjct: 72  TSNNITTLDLSQNTNLTY------LACDSNKLTNLDVTPLTKLTYLNCDTNKLT---KLD 122

Query: 775 IMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDL 834
           +     L  LN +RNTLT      +     L  LD   N+    +   ++  ++L+ +D 
Sbjct: 123 VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDC 177

Query: 835 SYNNLS 840
           S+N ++
Sbjct: 178 SFNKIT 183

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 87.4 bits (217), Expect = 7e-19
 Identities = 48/293 (16%), Positives = 102/293 (34%), Gaps = 55/293 (18%)

Query: 136 SLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLS 195
           +L+    +    +     +     +L  +  L      +     +E + +L++LI L+L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGV---TTIEGVQYLNNLIGLELK 71

Query: 196 FSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDS 255
            + ++  +     L  L  +  L L    L               ++  I      L   
Sbjct: 72  DNQITDLAP----LKNLTKITELELSGNPL--------------KNVSAI----AGLQ-- 107

Query: 256 IYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNL 315
                     ++  L +L S Q+    P     + +L  L+L  NQ   I   L  + NL
Sbjct: 108 ----------SIKTL-DLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS-PLAGLTNL 153

Query: 316 KSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIAN 375
           + L++    +  DL+  + NL      + L  L  D N+I+  +       +L  + + N
Sbjct: 154 QYLSIGNAQVS-DLTP-LANL------SKLTTLKADDNKIS-DISPLASLPNLIEVHLKN 204

Query: 376 NRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
           N++  +    +     L  + L N ++       + +NL    ++     +  
Sbjct: 205 NQI--SDVSPLANTSNLFIVTLTNQTITN-QPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.0 bits (195), Expect = 5e-16
 Identities = 51/292 (17%), Positives = 95/292 (32%), Gaps = 57/292 (19%)

Query: 265 SNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNT 324
             L   I + + +   +       +  + TL         I   +  + NL  L L  N 
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ 74

Query: 325 LRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINK 384
                   I +L+     T +  L L  N +  ++    G  S+K L + + ++      
Sbjct: 75  --------ITDLAPLKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 385 SVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQV 444
            +  L  L+ L+L  N +  +     L+ L+NL  L + +  ++                
Sbjct: 125 -LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVS---------------- 164

Query: 445 NLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK--- 501
                 + P     L N +++ +L   ++ ISD  P        NL   +L NNQI    
Sbjct: 165 -----DLTP-----LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS 211

Query: 502 --GKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSIS 551
                 NL          + +++            N    N+ K      I+
Sbjct: 212 PLANTSNLFI--------VTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 78.6 bits (194), Expect = 7e-16
 Identities = 60/266 (22%), Positives = 107/266 (40%), Gaps = 33/266 (12%)

Query: 240 TSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLAS 299
            +   I    +N+TD++          +  L +     +  +I E   ++ +L  L L  
Sbjct: 19  ANAIKIAAGKSNVTDTVT---QADLDGITTL-SAFGTGVT-TI-EGVQYLNNLIGLELKD 72

Query: 300 NQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSL 359
           NQ  ++   L N+  +  L LS N L+ ++S I   L       S+  L L S +IT  +
Sbjct: 73  NQITDLA-PLKNLTKITELELSGNPLK-NVSAI-AGL------QSIKTLDLTSTQIT-DV 122

Query: 360 PNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTI 419
               G S+L+ L +  N++  T    +  L  L+ L + N  +  +     L+NLS LT 
Sbjct: 123 TPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTT 177

Query: 420 LYLADNSLTLEFSHDWIPPF----QLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGI 475
           L   DN ++       I P      L +V+L + +I       L N + +  + ++N  I
Sbjct: 178 LKADDNKISD------ISPLASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTI 229

Query: 476 SDTVPNWFWNQTYNLSFFNLSNNQIK 501
           ++    +  N          S   I 
Sbjct: 230 TNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 30/233 (12%)

Query: 107 SSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQV 166
            +   L  +T L   G     ++I E +  L+ L  L L + +     P  L NL+++  
Sbjct: 35  VTQADLDGITTLSAFGTGV--TTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITE 89

Query: 167 LDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISC--- 223
           L++  N L   +N+  ++ L S+  LDL+ + ++  +     L+ L +L+ LYL      
Sbjct: 90  LELSGNPL---KNVSAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQIT 142

Query: 224 DLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIP 283
           ++ P        L   T+L+ + I    ++D + P      S L  L     N++   I 
Sbjct: 143 NISP--------LAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTL-KADDNKIS-DIS 189

Query: 284 EAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNL 336
                +P+L  + L +NQ  ++   L N  NL  +TL+  T+         NL
Sbjct: 190 -PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPVFYNNNL 240

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.7 bits (171), Expect = 6e-13
 Identities = 54/269 (20%), Positives = 106/269 (39%), Gaps = 37/269 (13%)

Query: 459 LRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-----GKLPNLSSRFHP 513
                  + +    S ++DTV          ++  +     +        L NL      
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTTIEGVQYLNNLIG---- 67

Query: 514 YRPGIDISSNQFE--GPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLL 571
               +++  NQ     P+  L    + L LS N    ++S +  +    +  +DL++  +
Sbjct: 68  ----LELKDNQITDLAPLKNLT-KITELELSGNPLK-NVSAIAGLQ--SIKTLDLTSTQI 119

Query: 572 SGRLPDCWSQFDSLAILNLANNSFFGKIPD--SIGFLKNLQSLSLYNNRLTGELPSFFTN 629
           +  +    +   +L +L L  N    +I +   +  L NLQ LS+ N +++    +   N
Sbjct: 120 TD-VTPL-AGLSNLQVLYLDLN----QITNISPLAGLTNLQYLSIGNAQVSDL--TPLAN 171

Query: 630 GSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSS 689
            S+LT +    N +S   P      L NL+ + LK+N+ +   PL   + +N+ I+ L++
Sbjct: 172 LSKLTTLKADDNKISDISPL---ASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTN 226

Query: 690 NNISGIIPKCFNNFTAMTHEKGSNLTLIS 718
             I+       NN       KG +   I+
Sbjct: 227 QTITNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 49/280 (17%), Positives = 98/280 (35%), Gaps = 46/280 (16%)

Query: 560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRL 619
               I    + ++  +    +  D +  L+           + + +L NL  L L +N++
Sbjct: 20  NAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQI 75

Query: 620 TGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHL 679
           T    +   N +++T ++L  N L          GL ++  L L S +     PL    L
Sbjct: 76  TD--LAPLKNLTKITELELSGNPLKNVSAI---AGLQSIKTLDLTSTQITDVTPLA--GL 128

Query: 680 ANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKA 739
           +N+Q+L L  N I+ I P      T + +     L++ +   + L    L          
Sbjct: 129 SNLQVLYLDLNQITNISP--LAGLTNLQY-----LSIGNAQVSDL--TPL---------- 169

Query: 740 VLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI 799
                       + L  +  L    NK+       +  L  LI ++L  N ++  ++P +
Sbjct: 170 ------------ANLSKLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQIS-DVSP-L 213

Query: 800 GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNL 839
               +L  + L+            + L   +V+       
Sbjct: 214 ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 45/235 (19%), Positives = 83/235 (35%), Gaps = 44/235 (18%)

Query: 606 LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKS 665
           L N   ++   + +T        +   +T +     G++  I     + L NL+ L LK 
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLELKD 72

Query: 666 NKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLA 725
           N+     PL+  +L  +  L+LS N +  +         ++       L L S   T + 
Sbjct: 73  NQITDLAPLK--NLTKITELELSGNPLKNVSA--IAGLQSIK-----TLDLTSTQITDV- 122

Query: 726 YDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALN 785
                                     + L  +++L L  N++       +  L  L  L+
Sbjct: 123 -----------------------TPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLS 157

Query: 786 LSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLS 840
           +    ++  +TP +  L  L  L    N+   S  S L+ L  L  + L  N +S
Sbjct: 158 IGNAQVS-DLTP-LANLSKLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 27/199 (13%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGF 171
           LQ +  LDL+    +       +  LS L  L L   +     PL    L+ LQ L IG 
Sbjct: 106 LQSIKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQITNISPL--AGLTNLQYLSIGN 160

Query: 172 NSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISC---DLPPT 228
             +    +L  L++LS L  L    + +S  S     L+ L +L  ++L +    D+ P 
Sbjct: 161 AQV---SDLTPLANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNNQISDVSP- 212

Query: 229 IPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGH 288
                  L ++++L ++ +    +T+         ++NLV    +         P     
Sbjct: 213 -------LANTSNLFIVTLTNQTITNQP----VFYNNNLVVPNVVKGPSGAPIAPATISD 261

Query: 289 MPSLNTLFLASNQFREIPK 307
             +  +  L  N    I  
Sbjct: 262 NGTYASPNLTWNLTSFINN 280

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 49/221 (22%), Positives = 84/221 (38%), Gaps = 30/221 (13%)

Query: 226 PPTIPSS----DLYLNSSTSLE----------VIVILGNNLTDSIYPWLFNVSSNLVELI 271
           P  +P S    DL  N    L            ++ L      +I    +   S+L  L 
Sbjct: 23  PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL- 81

Query: 272 NLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYNTLRGDLS 330
            L  N +Q     AF  + SL  L         +     G++  LK L +++N ++   S
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ---S 138

Query: 331 EIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINK------ 384
             +         T+L  L L SN+I  S+        L ++ + N  L+ ++N       
Sbjct: 139 FKLPEYFSNL--TNLEHLDLSSNKIQ-SIYC-TDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 385 SVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
              + ++L+ L L  N L+ V    F   L++L  ++L  N
Sbjct: 195 GAFKEIRLKELALDTNQLKSVPDGIF-DRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 54/217 (24%), Positives = 83/217 (38%), Gaps = 36/217 (16%)

Query: 290 PSLNTLFLASNQFREI-PKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTK--TSLA 346
            S   L L+ N  R +   S  +   L+ L LS           IQ + DG  +  + L+
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--------IQTIEDGAYQSLSHLS 79

Query: 347 WLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRG 404
            L L  N I  SL    F G SSL++L      L    N  +G L  L+ L + +N ++ 
Sbjct: 80  TLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 405 VISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQ 464
                + SNL+NL  L L+ N              ++  +               +    
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSN--------------KIQSIYCTD------LRVLHQMPLL 178

Query: 465 ILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK 501
            LSLD+S + ++   P  F  +   L    L  NQ+K
Sbjct: 179 NLSLDLSLNPMNFIQPGAF--KEIRLKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 54/246 (21%), Positives = 92/246 (37%), Gaps = 40/246 (16%)

Query: 599 IPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNL 658
           IPD++    + ++L L  N L       F +  +L ++DL +  +   I     + L +L
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 659 VVLSLKSNKFNGSIPLQL-CHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI 717
             L L  N    S+ L     L+++Q L     N++ +      +   +       L + 
Sbjct: 79  STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE-----LNVA 132

Query: 718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD 777
            N   S           YF                 L  ++ LDLSSNK+   +    + 
Sbjct: 133 HNLIQSFKLP------EYFSN---------------LTNLEHLDLSSNKI-QSIYCTDLR 170

Query: 778 -LAGL----IALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPS-SLSQLSRLSV 831
            L  +    ++L+LS N +   I P   +   L  L L  NQ   S+P     +L+ L  
Sbjct: 171 VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQK 228

Query: 832 MDLSYN 837
           + L  N
Sbjct: 229 IWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 17/195 (8%)

Query: 112 LQHLTYLDLSGNNFSGSSIPE--FIGSLSKLSYLGLSN---TEFAGPIPLQLGNLSRLQV 166
              L  LDLS       +I +  +   LS LS L L+       A         LS LQ 
Sbjct: 51  FPELQVLDLSRCEI--QTIEDGAYQS-LSHLSTLILTGNPIQSLALGAF---SGLSSLQK 104

Query: 167 LDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLP 226
           L     +L S EN   + HL +L  L+++ + +  F    +  S L +L+ L L S  + 
Sbjct: 105 LVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKL-PEYFSNLTNLEHLDLSSNKI- 161

Query: 227 PTIPSSDL-YLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEA 285
            +I  +DL  L+    L + + L  N  + I P  F     L EL  L +NQL+      
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKEL-ALDTNQLKSVPDGI 219

Query: 286 FGHMPSLNTLFLASN 300
           F  + SL  ++L +N
Sbjct: 220 FDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 35/197 (17%), Positives = 64/197 (32%), Gaps = 41/197 (20%)

Query: 680 ANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKA 739
            + + LDLS N +  +    F +F  +       L L      ++   +       +   
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQV-----LDLSRCEIQTIEDGA-------YQS- 74

Query: 740 VLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD-LAGLIALNLSRNTLTGQITPK 798
                         L  +  L L+ N +   +       L+ L  L      L   +   
Sbjct: 75  --------------LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENF 118

Query: 799 I-GQLKSLDFLDLSRNQFFGSIPSS--LSQLSRLSVMDLSYNNLSGKIPSG-----TQLQ 850
             G LK+L  L+++ N    S       S L+ L  +DLS N +   I         Q+ 
Sbjct: 119 PIGHLKTLKELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMP 176

Query: 851 SFSTSMY-AGNELCGLP 866
             + S+  + N +  + 
Sbjct: 177 LLNLSLDLSLNPMNFIQ 193

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 46/287 (16%), Positives = 84/287 (29%), Gaps = 94/287 (32%)

Query: 392 LESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPP------FQLSQVN 445
            ++L L  N LR + S +F  +   L +L L+   +        I          LS + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQ------TIEDGAYQSLSHLSTLI 82

Query: 446 LGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLP 505
           L                N I SL              F   + +L         +     
Sbjct: 83  L--------------TGNPIQSLA----------LGAFSGLS-SLQKLVAVETNLA---- 113

Query: 506 NLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYID 565
                         + +                                      L  ++
Sbjct: 114 -------------SLENFPIGHL------------------------------KTLKELN 130

Query: 566 LSNN-LLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSI-GFLKNLQ----SLSLYNNRL 619
           +++N + S +LP+ +S   +L  L+L++N     I  +    L  +     SL L  N +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 620 TGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSN 666
              +        +L  + L  N L   +P  I + L +L  + L +N
Sbjct: 190 N-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 83.6 bits (207), Expect = 1e-17
 Identities = 46/274 (16%), Positives = 100/274 (36%), Gaps = 35/274 (12%)

Query: 158 LGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKA 217
               +     ++   S+    +    + L+S+  +  + S++         +  L ++  
Sbjct: 20  DDAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDIKSVQG----IQYLPNVTK 72

Query: 218 LYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVEL--INLGS 275
           L+L    L    P ++L      +L  + +  N + D       +   +L +L  ++L  
Sbjct: 73  LFLNGNKLTDIKPLANL-----KNLGWLFLDENKVKD------LSSLKDLKKLKSLSLEH 121

Query: 276 NQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQN 335
           N +  S      H+P L +L+L +N+  +I   L  +  L +L+L  N         I +
Sbjct: 122 NGI--SDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ--------ISD 170

Query: 336 LSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESL 395
           +      T L  L+L  N I+  L    G  +L  L + +             LV   ++
Sbjct: 171 IVPLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 396 FLHNNSLRGVISEAFLSNLSNLTILYLADNSLTL 429
              + SL   ++   +S+  +     +  +    
Sbjct: 230 KNTDGSL---VTPEIISDDGDYEKPNVKWHLPEF 260

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.6 bits (194), Expect = 6e-16
 Identities = 51/253 (20%), Positives = 102/253 (40%), Gaps = 52/253 (20%)

Query: 178 ENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLN 237
           + +      +  I  +L   +++         ++L+S+  +   + D+            
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTDAVT----QNELNSIDQIIANNSDI------------ 58

Query: 238 SSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFL 297
              S++ I  L                 N+ +L  L  N+L   I +   ++ +L  LFL
Sbjct: 59  --KSVQGIQYL----------------PNVTKL-FLNGNKLT-DI-KPLANLKNLGWLFL 97

Query: 298 ASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITG 357
             N+ +++  SL ++  LKSL+L +N +       I  L        L  L+L +N+IT 
Sbjct: 98  DENKVKDL-SSLKDLKKLKSLSLEHNGIS-----DINGLVH---LPQLESLYLGNNKIT- 147

Query: 358 SLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNL 417
            +      + L  LS+ +N++  +    +  L KL++L+L  N +  +     L+ L NL
Sbjct: 148 DITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISDL---RALAGLKNL 202

Query: 418 TILYLADNSLTLE 430
            +L L       +
Sbjct: 203 DVLELFSQECLNK 215

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 53/264 (20%), Positives = 97/264 (36%), Gaps = 59/264 (22%)

Query: 464 QILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-----GKLPNLSSRFHPYRPGI 518
           + +  ++    ++D V     N+  ++     +N+ IK       LPN++         +
Sbjct: 25  ETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGIQYLPNVTK--------L 73

Query: 519 DISSNQFE--GPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLP 576
            ++ N+     P+  L  N  +L L +NK    +S L  +   KL  + L +N +S  + 
Sbjct: 74  FLNGNKLTDIKPLANLK-NLGWLFLDENKVK-DLSSLKDLK--KLKSLSLEHNGIS-DIN 128

Query: 577 DCWSQFDSLAILNLANNSFFGKIPD--SIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLT 634
                   L  L L NN    KI D   +  L  L +LSL +N+++ ++           
Sbjct: 129 GL-VHLPQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQIS-DIVPL-------- 174

Query: 635 LMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISG 694
                              GL  L  L L  N  +    L    L N+ +L+L S     
Sbjct: 175 ------------------AGLTKLQNLYLSKNHISDLRALA--GLKNLDVLELFSQECLN 214

Query: 695 IIPKCFNNFTAMTHEKGSNLTLIS 718
                 +N       K ++ +L++
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 42/235 (17%), Positives = 75/235 (31%), Gaps = 44/235 (18%)

Query: 606 LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKS 665
                  +L    +T          + +  +    + +   +     + L N+  L L  
Sbjct: 23  FAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQGI--QYLPNVTKLFLNG 77

Query: 666 NKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLA 725
           NK    I   L +L N+  L L  N +  +      +   +       L+L  N  + + 
Sbjct: 78  NKLT-DIK-PLANLKNLGWLFLDENKVKDLSS--LKDLKKLKS-----LSLEHNGISDI- 127

Query: 726 YDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALN 785
                                       L  ++ L L +NK+       +  L  L  L+
Sbjct: 128 -----------------------NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLS 162

Query: 786 LSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLS 840
           L  N ++  I P +  L  L  L LS+N    S   +L+ L  L V++L      
Sbjct: 163 LEDNQIS-DIVP-LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 43/195 (22%), Positives = 72/195 (36%), Gaps = 23/195 (11%)

Query: 107 SSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQV 166
             L  L++L +L L  N      +   +  L KL  L L +   +    L   +L +L+ 
Sbjct: 84  KPLANLKNLGWLFLDENKVK--DL-SSLKDLKKLKSLSLEHNGISDINGLV--HLPQLES 138

Query: 167 LDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLP 226
           L +G N +    ++  LS L+ L  L L  + +S        L+ L  L+ LYL    + 
Sbjct: 139 LYLGNNKI---TDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHI- 190

Query: 227 PTIPSSDL-YLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEA 285
                SDL  L    +L+V+ +      +       N  SNLV    + +       PE 
Sbjct: 191 -----SDLRALAGLKNLDVLELFSQECLNKP----INHQSNLVVPNTVKNTDGSLVTPEI 241

Query: 286 FGHMPSLNTLFLASN 300
                      +  +
Sbjct: 242 ISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 21/190 (11%)

Query: 653 EGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGS 712
           +     +  +LK      ++      L ++  +  ++++I  +  +       +T     
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSV--QGIQYLPNVTK---- 72

Query: 713 NLTLISNYYTSLAYDSLKT--TKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGE 770
            L L  N  T +   +        + D+  +            L  +K L L  N +   
Sbjct: 73  -LFLNGNKLTDIKPLANLKNLGWLFLDENKVK----DLSSLKDLKKLKSLSLEHNGI--S 125

Query: 771 VPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLS 830
               ++ L  L +L L  N +T  IT  + +L  LD L L  NQ   S    L+ L++L 
Sbjct: 126 DINGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQ 181

Query: 831 VMDLSYNNLS 840
            + LS N++S
Sbjct: 182 NLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 51/260 (19%), Positives = 85/260 (32%), Gaps = 44/260 (16%)

Query: 580 SQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG 639
             F      NL   S       +   L ++  +   N+ +   +         +T + L 
Sbjct: 21  DAFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLN 76

Query: 640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKC 699
            N L+   P      L NL  L L  NK      L+   L  ++ L L  N IS I    
Sbjct: 77  GNKLTDIKPL---ANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGISDING-- 129

Query: 700 FNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKI 759
             +   +       L L +N  T +    L                      S L  +  
Sbjct: 130 LVHLPQLES-----LYLGNNKITDI--TVL----------------------SRLTKLDT 160

Query: 760 LDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSI 819
           L L  N++       +  L  L  L LS+N ++  +   +  LK+LD L+L   +     
Sbjct: 161 LSLEDNQI--SDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKP 216

Query: 820 PSSLSQLSRLSVMDLSYNNL 839
            +  S L   + +  +  +L
Sbjct: 217 INHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 29/169 (17%), Positives = 64/169 (37%), Gaps = 23/169 (13%)

Query: 676 LCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSL----AYDSLKT 731
               A     +L   +++  +    N   ++       +   ++   S+       ++  
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQ-----IIANNSDIKSVQGIQYLPNVTK 72

Query: 732 TKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTL 791
                +K       +  +  + L  +  L L  NK+  +    + DL  L +L+L  N +
Sbjct: 73  LFLNGNKL------TDIKPLANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGI 124

Query: 792 TGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLS 840
           +  I   +  L  L+ L L  N+   +  + LS+L++L  + L  N +S
Sbjct: 125 S-DING-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS 169

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.9 bits (205), Expect = 5e-17
 Identities = 57/281 (20%), Positives = 106/281 (37%), Gaps = 23/281 (8%)

Query: 561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT 620
           +  +DLSNN ++        +  +L  L L +N       DS   L +L+ L L  N L+
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 621 GELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQ-LCHL 679
               S+F   S LT ++L  N       T +   L  L +L + +      I  +    L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173

Query: 680 ANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKA 739
             ++ L++ ++++    PK   +   ++H     L L    +  L    +  T S     
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSH-----LILHMKQHILLLEIFVDVTSS----- 223

Query: 740 VLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI 799
            +     +     T    ++    +N L        +       + ++  +L  Q+   +
Sbjct: 224 -VECLELRDTDLDTFHFSELSTGETNSL--------IKKFTFRNVKITDESLF-QVMKLL 273

Query: 800 GQLKSLDFLDLSRNQFFGSIPSS-LSQLSRLSVMDLSYNNL 839
            Q+  L  L+ SRNQ   S+P     +L+ L  + L  N  
Sbjct: 274 NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 48/253 (18%), Positives = 91/253 (35%), Gaps = 27/253 (10%)

Query: 112 LQHLTYLDLSGNNFSGSSIPE--FIGSLSKLSYLGLSNTEFAGPIPLQL-GNLSRLQVLD 168
             +L  L L+ N  +  +I E  F   L  L +L LS    +  +       LS L  L+
Sbjct: 75  CVNLQALVLTSNGIN--TIEEDSFSS-LGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLN 130

Query: 169 IGFNSLISGENLEWLSHLSSLIYLDL-SFSNLSKFSNWMQVLSKLDSLKALYLISCDLPP 227
           +  N   +       SHL+ L  L + +    +K     +  + L  L+ L + + DL  
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--KDFAGLTFLEELEIDASDLQ- 187

Query: 228 TIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELI-------NLGSNQLQG 280
           +     L   S  ++  +++        +     +V+S++  L            ++L  
Sbjct: 188 SYEPKSL--KSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244

Query: 281 SIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGC 340
               +     +   + +      ++ K L  +  L  L  S N L+     I   L    
Sbjct: 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRL---- 300

Query: 341 TKTSLAWLFLDSN 353
             TSL  ++L +N
Sbjct: 301 --TSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 56/335 (16%), Positives = 105/335 (31%), Gaps = 71/335 (21%)

Query: 262 NVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTL 320
            ++  +  L +L +N++            +L  L L SN    I   S  ++ +L+ L L
Sbjct: 49  GLTEAVKSL-DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107

Query: 321 SYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNG 380
           SYN L    S   + L      +SL +L L  N    +L     FS L            
Sbjct: 108 SYNYLSNLSSSWFKPL------SSLTFLNLLGNPYK-TLGETSLFSHLT----------- 149

Query: 381 TINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQ 440
                     KL+ L + N      I     + L+ L  L +  + L             
Sbjct: 150 ----------KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ------SYE--- 190

Query: 441 LSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQI 500
                          PK L++   +  L +        +   F + T ++    L +  +
Sbjct: 191 ---------------PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDL 234

Query: 501 KGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHK 560
                +            ++S+ +    I +       + ++       +  L  I+   
Sbjct: 235 DTFHFS------------ELSTGETNSLIKKFTFR--NVKITDESLFQVMKLLNQIS--G 278

Query: 561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSF 595
           L  ++ S N L       + +  SL  + L  N +
Sbjct: 279 LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 30/194 (15%)

Query: 656 VNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLT 715
             +  L L +N+        L    N+Q L L+SN I+ I    F++  ++ H     L 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH-----LD 106

Query: 716 LISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEI 775
           L  NY ++L+          F                 L  +  L+L  N         +
Sbjct: 107 LSYNYLSNLSSSW-------FKP---------------LSSLTFLNLLGNPYKTLGETSL 144

Query: 776 MD-LAGLIALNLSRNTLTGQITPKI-GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMD 833
              L  L  L +       +I  K    L  L+ L++  +      P SL  +  +S + 
Sbjct: 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204

Query: 834 LSYNNLSGKIPSGT 847
           L        +    
Sbjct: 205 LHMKQHI-LLLEIF 217

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 13/165 (7%)

Query: 265 SNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNT 324
           S     +N    Q   +       M SL  + LA+    ++   +    N+K LT++   
Sbjct: 20  STFKAYLNGLLGQSSTANIT-EAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIH 77

Query: 325 LRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGS-LPNFGGFSSLKRLSIANNRLNGTIN 383
              + + I   L      ++L  L +   ++T   +PN  G +SL  L I+++  + +I 
Sbjct: 78  AT-NYNPI-SGL------SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 384 KSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
             +  L K+ S+ L  N     I    L  L  L  L +  + + 
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.4 bits (173), Expect = 7e-14
 Identities = 24/169 (14%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 155 PLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDS 214
            +    ++ L  + +   ++    +L  + +  ++  L ++  + + ++     +S L +
Sbjct: 37  NITEAQMNSLTYITLANINV---TDLTGIEYAHNIKDLTINNIHATNYNP----ISGLSN 89

Query: 215 LKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLG 274
           L+ L ++  D+      +   L+  TSL ++ I  +   DSI   +  +   +  + +L 
Sbjct: 90  LERLRIMGKDVTSDKIPN---LSGLTSLTLLDISHSAHDDSILTKINTL-PKVNSI-DLS 144

Query: 275 SNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYN 323
            N     I      +P L +L +  +   +  + + +   L  L     
Sbjct: 145 YNGAITDI-MPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 6e-13
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGF 171
           L +L  L + G + +   IP  +  L+ L+ L +S++     I  ++  L ++  +D+ +
Sbjct: 87  LSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 172 NSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYL 220
           N  I+  ++  L  L  L  L++ F  +  +      +     L  LY 
Sbjct: 146 NGAIT--DIMPLKTLPELKSLNIQFDGVHDYRG----IEDFPKLNQLYA 188

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 20/157 (12%), Positives = 55/157 (35%), Gaps = 9/157 (5%)

Query: 539 LNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGK 598
           + L+    +  ++ +       +  + ++N   +    +  S   +L  L +        
Sbjct: 49  ITLANINVT-DLTGIEYAH--NIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSD 103

Query: 599 IPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNL 658
              ++  L +L  L + ++     + +      ++  +DL  NG   +I     + L  L
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL--KTLPEL 161

Query: 659 VVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGI 695
             L+++ +  +    ++      +  L   S  I G 
Sbjct: 162 KSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 12/151 (7%)

Query: 560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPD--SIGFLKNLQSLSLYNN 617
            L YI L+N  ++           ++  L + N        +   I  L NL+ L +   
Sbjct: 45  SLTYITLANINVTDLTG--IEYAHNIKDLTINNI----HATNYNPISGLSNLERLRIMGK 98

Query: 618 RLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLC 677
            +T +     +  + LTL+D+  +     I T I   L  +  + L  N     I   L 
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM-PLK 156

Query: 678 HLANVQILDLSSNNISGIIPKCFNNFTAMTH 708
            L  ++ L++  + +         +F  +  
Sbjct: 157 TLPELKSLNIQFDGVHDYRG--IEDFPKLNQ 185

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 16/145 (11%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGF 171
             ++  L ++  + +  +    I  LS L  L +   +        L  L+ L +LDI  
Sbjct: 65  AHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 172 NSLISGENLEWLSHLSSLIYLDLSFSN-LSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
           ++      L  ++ L  +  +DLS++  ++        L  L  LK+L +    +     
Sbjct: 122 SA-HDDSILTKINTLPKVNSIDLSYNGAITDIMP----LKTLPELKSLNIQFDGV----- 171

Query: 231 SSDL-YLNSSTSLEVIVILGNNLTD 254
             D   +     L  +      +  
Sbjct: 172 -HDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 26/189 (13%), Positives = 66/189 (34%), Gaps = 34/189 (17%)

Query: 653 EGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGS 712
             + +L  ++L +        ++  +  N++ L +++ + +   P   +  + +      
Sbjct: 41  AQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHATNYNP--ISGLSNLER---- 92

Query: 713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVP 772
            L ++    TS    +L                      S L  + +LD+S +     + 
Sbjct: 93  -LRIMGKDVTSDKIPNL----------------------SGLTSLTLLDISHSAHDDSIL 129

Query: 773 EEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVM 832
            +I  L  + +++LS N     I P +  L  L  L++  +         +    +L+ +
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGV--HDYRGIEDFPKLNQL 186

Query: 833 DLSYNNLSG 841
                 + G
Sbjct: 187 YAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 24/184 (13%), Positives = 60/184 (32%), Gaps = 32/184 (17%)

Query: 657 NLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTL 716
                       + +  +    + ++  + L++ N++ +          +      +LT+
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIK-----DLTI 73

Query: 717 ISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIM 776
            + + T+                            S L  ++ L +    +  +    + 
Sbjct: 74  NNIHATNY------------------------NPISGLSNLERLRIMGKDVTSDKIPNLS 109

Query: 777 DLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSY 836
            L  L  L++S +     I  KI  L  ++ +DLS N     I   L  L  L  +++ +
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQF 168

Query: 837 NNLS 840
           + + 
Sbjct: 169 DGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 37/194 (19%), Positives = 69/194 (35%), Gaps = 40/194 (20%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGF 171
           +  LTY+ L+  N +   +   I     +  L ++N       P+    LS L+ L I  
Sbjct: 43  MNSLTYITLANINVT--DL-TGIEYAHNIKDLTINNIHATNYNPI--SGLSNLERLRIMG 97

Query: 172 NSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPS 231
              ++ + +  LS L+SL  LD+S S           L+K+++L  +             
Sbjct: 98  KD-VTSDKIPNLSGLTSLTLLDISHSAHDDSI-----LTKINTLPKV------------- 138

Query: 232 SDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPS 291
           + + L+ + ++  I+ L                  L  L N+  + +           P 
Sbjct: 139 NSIDLSYNGAITDIMPLKTL-------------PELKSL-NIQFDGVHDY--RGIEDFPK 182

Query: 292 LNTLFLASNQFREI 305
           LN L+  S      
Sbjct: 183 LNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 31/212 (14%), Positives = 65/212 (30%), Gaps = 40/212 (18%)

Query: 366 SSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
           S+ K         + T N +  Q+  L  + L N ++  +     +    N+  L + + 
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL---TGIEYAHNIKDLTINNI 76

Query: 426 SLTLEFSHDWIPPF----QLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPN 481
             T         P      L ++ +    +       L     +  LDIS+S   D++  
Sbjct: 77  HATN------YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 482 WFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNL 541
                   ++  +LS N     +  L +                   +P+L      LN+
Sbjct: 131 KINTLP-KVNSIDLSYNGAITDIMPLKT-------------------LPEL----KSLNI 166

Query: 542 SKNKFSGSISFLCSITGHKLDYIDLSNNLLSG 573
             +        +      KL+ +   +  + G
Sbjct: 167 QFDGVH-DYRGIEDFP--KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG 817
           K L +++          I  L+ L  L +    +T    P +  L SL  LD+S +    
Sbjct: 69  KDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPS 845
           SI + ++ L +++ +DLSYN     I  
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 606 LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKS 665
           + +L  ++L N  +T +L +       +  + +     +   P     GL NL  L +  
Sbjct: 43  MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNPI---SGLSNLERLRIMG 97

Query: 666 NKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTH 708
                     L  L ++ +LD+S +     I    N    +  
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 16/97 (16%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 750 YQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLD 809
            ++ +  +  + L++  +       I     +  L ++    T    P I  L +L+ L 
Sbjct: 39  TEAQMNSLTYITLANINV--TDLTGIEYAHNIKDLTINNIHATN-YNP-ISGLSNLERLR 94

Query: 810 LSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSG 846
           +           +LS L+ L+++D+S++     I + 
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 80.6 bits (199), Expect = 3e-16
 Identities = 43/223 (19%), Positives = 74/223 (33%), Gaps = 12/223 (5%)

Query: 214 SLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINL 273
           +   L  +   L   I       +    LE I I  N++ + I   +F+    L E+   
Sbjct: 31  NAIELRFVLTKLR-VIQKGAF--SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 274 GSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRGDLSEI 332
            +N L    PEAF ++P+L  L +++   + +P     +      L +  N     +  I
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN---IHTI 144

Query: 333 IQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLV 390
            +N   G +      L+L+ N I   + N  F G    +     NN L    N       
Sbjct: 145 ERNSFVGLS-FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202

Query: 391 KLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSH 433
               L +    +  + S     NL  L      +         
Sbjct: 203 GPVILDISRTRIHSLPSYGL-ENLKKLRARSTYNLKKLPTLEK 244

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 80.3 bits (198), Expect = 3e-16
 Identities = 41/262 (15%), Positives = 81/262 (30%), Gaps = 20/262 (7%)

Query: 118 LDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISG 177
                +  +   IP  +        L    T+              L+ ++I  N ++  
Sbjct: 14  FLCQESKVT--EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 178 ENLEWLSHLSSLIYLDLSFSN-LSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYL 236
              +  S+L  L  + +  +N L   +   +    L +L+ L + +  +   +P  D++ 
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINP--EAFQNLPNLQYLLISNTGI-KHLP--DVHK 124

Query: 237 NSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLF 296
             S    ++ I  N    +I    F   S    ++ L  N +Q     AF          
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184

Query: 297 LASNQFREIPK-SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEI 355
             +N   E+P            L +S   +    S  ++NL        L      + + 
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL------KKLRARSTYNLK- 237

Query: 356 TGSLPNFGGFSSLKRLSIANNR 377
              LP      +L   S+    
Sbjct: 238 --KLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 44/258 (17%), Positives = 74/258 (28%), Gaps = 38/258 (14%)

Query: 561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSI-GFLKNLQSLSLYN-NR 618
              +      L       +S F  L  + ++ N     I   +   L  L  + +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 619 LTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQ-LC 677
           L    P  F N   L  + +   G+   +P       +  V+L ++ N    +I      
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 678 HL-ANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYF 736
            L     IL L+ N I  I    FN                +N    L  D         
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDEL-----NLSDNNNLEELPNDVF------- 198

Query: 737 DKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD-LAGLIALNLSRNTLTGQI 795
                                 ILD+S  ++   +P   ++ L  L A +          
Sbjct: 199 ---------------HGASGPVILDISRTRI-HSLPSYGLENLKKLRARSTYNLK----K 238

Query: 796 TPKIGQLKSLDFLDLSRN 813
            P + +L +L    L+  
Sbjct: 239 LPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 36/214 (16%), Positives = 78/214 (36%), Gaps = 12/214 (5%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQ-LGNLSRLQVLDIG 170
              L  +++S N+       +   +L KL  + +        I  +   NL  LQ L I 
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKL-DSLKALYLISCDLPPTI 229
              +    ++    H    + LD+   N++  +        L      L+L    +   I
Sbjct: 113 NTGIKHLPDV-HKIHSLQKVLLDIQ-DNINIHTIERNSFVGLSFESVILWLNKNGI-QEI 169

Query: 230 PSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHM 289
            +S     + T L+ + +  NN  + +   +F+ +S  V L ++   ++         ++
Sbjct: 170 HNSAF---NGTQLDELNLSDNNNLEELPNDVFHGASGPVIL-DISRTRIHSLPSYGLENL 225

Query: 290 PSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYN 323
             L          +++P +L  +  L   +L+Y 
Sbjct: 226 KKLRARST--YNLKKLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 49/252 (19%), Positives = 86/252 (34%), Gaps = 39/252 (15%)

Query: 599 IPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNL 658
           IP  +   +N   L     +L       F+    L  +++ +N +   I   +   L  L
Sbjct: 24  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 659 VVLSL-KSNKFNGSIPLQLC-HLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTL 716
             + + K+N     I  +   +L N+Q L +S+  I  +      +           L +
Sbjct: 82  HEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL-----LDI 135

Query: 717 ISNYY-TSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEI 775
             N    ++  +S                              IL L+ N +  E+    
Sbjct: 136 QDNINIHTIERNSF---------------------VGLSFESVILWLNKNGI-QEIHNSA 173

Query: 776 MDLAGLIALNLSRNTLTGQITPKI-GQLKSLDFLDLSRNQFFGSIPS-SLSQLSRLSVMD 833
            +   L  LNLS N    ++   +         LD+SR +   S+PS  L  L +L    
Sbjct: 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRA-- 230

Query: 834 LSYNNLSGKIPS 845
            S  NL  K+P+
Sbjct: 231 RSTYNLK-KLPT 241

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 54/299 (18%), Positives = 95/299 (31%), Gaps = 74/299 (24%)

Query: 392 LESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKI 451
              L      LR +   AF S   +L  + ++ N +      + I     S  NL     
Sbjct: 32  AIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQNDVL-----EVIEADVFS--NLPKLHE 83

Query: 452 GPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRF 511
                  +   N +L ++          P  F N   NL +  +SN  IK  LP++    
Sbjct: 84  -----IRIEKANNLLYIN----------PEAFQNLP-NLQYLLISNTGIK-HLPDVHKIH 126

Query: 512 HPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLL 571
              +  +DI  N     I  +  N+ F+ LS                 +   + L+ N +
Sbjct: 127 SLQKVLLDIQDN---INIHTIERNS-FVGLS----------------FESVILWLNKNGI 166

Query: 572 SGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGS 631
                             + N++F G         +  +     NN L       F   S
Sbjct: 167 Q----------------EIHNSAFNG--------TQLDELNLSDNNNLEELPNDVFHGAS 202

Query: 632 QLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSN 690
              ++D+ +  +   +P++  E L  L   S  + K    +P  L  L  +    L+  
Sbjct: 203 GPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYP 256

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.5 bits (202), Expect = 3e-16
 Identities = 80/452 (17%), Positives = 144/452 (31%), Gaps = 79/452 (17%)

Query: 113 QHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNT----EFAGPIPLQLGNLSRLQVLD 168
             +  LD+     S +   E +  L +   + L +          I   L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 169 IGFNSLISGENLEWLSHL-----SSLIYLDLSFSNLSKFSNWM---QVLSKLDSLKALYL 220
           +  N  +    +  +          +  L L    L+  +        L  L +L+ L+L
Sbjct: 63  LRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG-AGCGVLSSTLRTLPTLQELHL 120

Query: 221 ISCDL-PPTIPS-SDLYLNSSTSLEVIVILGNNLTDSIYPWLFNV---SSNLVELINLGS 275
               L    +    +  L+    LE + +   +L+ +    L +V     +  EL  + +
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL-TVSN 179

Query: 276 NQLQGS----IPEAFGHMP-SLNTLFLASNQF-----REIPKSLGNMCNLKSLTLSYNTL 325
           N +  +    + +     P  L  L L S        R++   + +  +L+ L L  N L
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 326 RGDLSEIIQNLSDG--CTKTSLAWLFLDSNEITG--------SLPNFGGFSSLKRLSIAN 375
            GD    +  L  G     + L  L++    IT          L       SLK LS+A 
Sbjct: 240 -GD--VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA---KESLKELSLAG 293

Query: 376 NRLNGTINKSVGQLVK-----LESLFLHNNSLRGV----ISEAFLSNLSNLTILYLADNS 426
           N L     + + + +      LESL++ + S         S   L+    L  L +++N 
Sbjct: 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV-LAQNRFLLELQISNNR 352

Query: 427 LT----------LEFSHDWIPPFQLSQVNLGSCKIGPR----FPKWLRNQNQILSLDISN 472
           L           L           L  + L  C +           L   + +  LD+SN
Sbjct: 353 LEDAGVRELCQGLGQPG-----SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407

Query: 473 SGISDTVPNWFW----NQTYNLSFFNLSNNQI 500
           + + D                L    L +   
Sbjct: 408 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.5 bits (189), Expect = 1e-14
 Identities = 77/362 (21%), Positives = 120/362 (33%), Gaps = 60/362 (16%)

Query: 105 ISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSL----SKLSYLGLSNTEF----AGPIPL 156
           +SS+L  L  L  L LS N    + +      L     +L  L L           P+  
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 157 QLGNLSRLQVLDIGFNSLISGENLEWLS-----HLSSLIYLDLSFSNLSKFS--NWMQVL 209
            L      + L +  N  I+   +  L          L  L L    ++  +  +   ++
Sbjct: 165 VLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 210 SKLDSLKALYLISCDLPPT--IPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNV---S 264
           +   SL+ L L S  L            L+ S+ L  + I    +T      L  V    
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 265 SNLVELINLGSNQLQGS----IPEAFGHM-PSLNTLFLASNQFRE-----IPKSLGNMCN 314
            +L EL +L  N+L       + E        L +L++ S  F           L     
Sbjct: 284 ESLKEL-SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342

Query: 315 LKSLTLSYNTLRGDLSEIIQNLSDG--CTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLS 372
           L  L +S N L  D    ++ L  G     + L  L+L   +++ S       SSL    
Sbjct: 343 LLELQISNNRL-ED--AGVRELCQGLGQPGSVLRVLWLADCDVSDS-----SCSSLAATL 394

Query: 373 IANNRLNGTINKSVGQLVKLESLFLHNNSL--RGV--ISEAFLSNLSNLTILYLADNSLT 428
           +AN+               L  L L NN L   G+  + E+       L  L L D   +
Sbjct: 395 LANHS--------------LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

Query: 429 LE 430
            E
Sbjct: 441 EE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.2 bits (170), Expect = 3e-12
 Identities = 72/491 (14%), Positives = 149/491 (30%), Gaps = 111/491 (22%)

Query: 263 VSSNLVELINLGSNQLQ-GSIPEAFGHMPSLNTLFLASNQF-----REIPKSLGNMCNLK 316
           +S ++  L ++   +L      E    +     + L          ++I  +L     L 
Sbjct: 1   MSLDIQSL-DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 317 SLTLSYNTLRGDLSEIIQNLSDG--CTKTSLAWLFLDSNEITGS-----LPNFGGFSSLK 369
            L L  N L GD+   +  +  G       +  L L +  +TG+             +L+
Sbjct: 60  ELNLRSNEL-GDVG--VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116

Query: 370 RLSIANNRLNGTINKSVGQLV-----KLESLFLHNNSLRGVISEAF---LSNLSNLTILY 421
            L +++N L     + + + +     +LE L L   SL     E     L    +   L 
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176

Query: 422 LADNSLTLE--------FSHDWIPPFQLSQVNLGSCKIGPR----FPKWLRNQNQILSLD 469
           +++N +                  P QL  + L SC +           + ++  +  L 
Sbjct: 177 VSNNDINEAGVRVLCQGLKD---SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233

Query: 470 ISNSGISDTVPNWFW----NQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQF 525
           + ++ + D           + +  L    +    I                    ++   
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI--------------------TAKGC 273

Query: 526 EGPIPQLPLNAS--FLNLSKNKFSGS----ISFLCSITGHKLDYIDLSNNLLSGR----L 575
                 L    S   L+L+ N+        +       G +L+ + + +   +       
Sbjct: 274 GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333

Query: 576 PDCWSQFDSLAILNLANNSFFGKIPDS---------IGFLKNLQSLSLYNNRLTGE---- 622
               +Q   L  L ++NN    ++ D+               L+ L L +  ++      
Sbjct: 334 SSVLAQNRFLLELQISNN----RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389

Query: 623 LPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANV 682
           L +       L  +DL  N         +G+  +  +V S++            C L   
Sbjct: 390 LAATLLANHSLRELDLSNNC--------LGDAGILQLVESVRQPG---------CLL--- 429

Query: 683 QILDLSSNNIS 693
           + L L     S
Sbjct: 430 EQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.8 bits (143), Expect = 5e-09
 Identities = 93/531 (17%), Positives = 162/531 (30%), Gaps = 127/531 (23%)

Query: 187 SSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIV 246
             +  LD+    LS  + W ++L  L   + + L  C L            +    + I 
Sbjct: 3   LDIQSLDIQCEELSD-ARWAELLPLLQQCQVVRLDDCGL------------TEARCKDIS 49

Query: 247 ILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHM-----PSLNTLFLASNQ 301
                           V+  L EL NL SN+L                  +  L L +  
Sbjct: 50  ------------SALRVNPALAEL-NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 96

Query: 302 F-----REIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEIT 356
                   +  +L  +  L+ L LS N            L D   +  L    LD     
Sbjct: 97  LTGAGCGVLSSTLRTLPTLQELHLSDN-----------LLGDAGLQ-LLCEGLLDPQ--- 141

Query: 357 GSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVK----LESLFLHNNSL--RGV--ISE 408
                      L++L +    L+    + +  +++     + L + NN +   GV  + +
Sbjct: 142 ---------CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ 192

Query: 409 AFLSNLSNLTILYLADNSLTLE----FSHDWIPPFQLSQVNLGSCKIGPRFPKWL----- 459
               +   L  L L    +T +              L ++ LGS K+G      L     
Sbjct: 193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252

Query: 460 RNQNQILSLDISNSGISDTVPNWF-----WNQTYNLSFFNLSNNQIKGKLPNLSSRFHPY 514
              +++ +L I   GI+              ++  L   +L+ N++  +           
Sbjct: 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKES--LKELSLAGNELGDE----------- 299

Query: 515 RPGIDISSNQFEGPIPQLPLNASFLNLSKNKFS-GSISFLCSITGH--KLDYIDLSNN-- 569
             G  +       P  QL      L +    F+    S   S+      L  + +SNN  
Sbjct: 300 --GARLLCETLLEPGCQL----ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

Query: 570 ------LLSGRLPDCWSQFDSLAILNLANNSF----FGKIPDSIGFLKNLQSLSLYNNRL 619
                  L   L    S    L +L LA+          +  ++    +L+ L L NN L
Sbjct: 354 EDAGVRELCQGLGQPGS---VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

Query: 620 TGE-----LPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVN---LVVLS 662
                   + S    G  L  + L     S E+   +     +   L V+S
Sbjct: 411 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 75/478 (15%), Positives = 139/478 (29%), Gaps = 92/478 (19%)

Query: 415 SNLTILYLADNSLTLEFSHDWIPPFQ-LSQVNLGSCKIGPR----FPKWLRNQNQILSLD 469
            ++  L +    L+     + +P  Q    V L  C +           LR    +  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 470 ISNSGISD----TVPNWFWNQTYNLSFFNLSNNQIKGK-LPNLSSRFHPYRPGIDISSNQ 524
           + ++ + D     V       +  +   +L N  + G     LSS            +  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL---------RTLP 113

Query: 525 FEGPIPQLPLNASFLNLSKNKFSGS-ISFLCSITGH---KLDYIDLSNNLLSGRLPDCWS 580
                         L+LS N    + +  LC        +L+ + L    LS        
Sbjct: 114 ----------TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS---AASCE 160

Query: 581 QFD-------SLAILNLANNSF----FGKIPDSIGFLK-NLQSLSLYNNRLTGE----LP 624
                         L ++NN         +   +      L++L L +  +T +    L 
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 625 SFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVN----LVVLSLKSNKFN----GSIPLQL 676
               + + L  + LG N L       +  GL++    L  L +          G +   L
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 677 CHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYF 736
               +++ L L+ N +     +           +  +L + S  +T+             
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF------- 333

Query: 737 DKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAG-----LIALNLSRNTL 791
                    S       L     L +S+N+L      E+    G     L  L L+   +
Sbjct: 334 --------SSVLAQNRFL---LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

Query: 792 TGQ----ITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQL-----SRLSVMDLSYNNLS 840
           +      +   +    SL  LDLS N    +    L +        L  + L     S
Sbjct: 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.2 bits (195), Expect = 5e-16
 Identities = 49/263 (18%), Positives = 85/263 (32%), Gaps = 24/263 (9%)

Query: 107 SSLLILQHLTYLDLSGNNFSGSSIPEF--IGSLSKLSYLGLSNTEFAGPIPLQLGNLSRL 164
           + ++    L  L +         +     +  +S L  L L N E  G  P  L   +  
Sbjct: 62  TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121

Query: 165 QVLDIGFNSLISGENLEWLSHLS-----SLIYLDLSFSNLSKFSNWMQVLSKLDSLKALY 219
            +  +   ++       WL+ L       L  L ++ ++   FS   + +    +L  L 
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC--EQVRVFPALSTLD 179

Query: 220 LISCDLPPTIP-SSDLYLNSSTSLEVIVILGNNLT--DSIYPWLFNVSSNLVELINLGSN 276
           L            S L      +L+V+ +    +     +   L      L  L +L  N
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL-DLSHN 238

Query: 277 QLQGSIPE-AFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQN 335
            L+ +    +      LN+L L+    +++PK L     L  L LSYN L          
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA--KLSVLDLSYNRLDR-------- 288

Query: 336 LSDGCTKTSLAWLFLDSNEITGS 358
                    +  L L  N    S
Sbjct: 289 NPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 50/257 (19%), Positives = 86/257 (33%), Gaps = 34/257 (13%)

Query: 180 LEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSS 239
           +E      SL YL       +    +  ++  L SLK L + +  +P  I    L +   
Sbjct: 36  VELYGGGRSLEYLLKRVDTEADLGQFTDIIKSL-SLKRLTVRAARIPSRILFGALRVLGI 94

Query: 240 TSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQG---SIPEAFGH-MPSLNTL 295
           + L+ + +    +T +  P L   +   + ++NL +         + E      P L  L
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154

Query: 296 FLASNQFREIP-KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNE 354
            +A         + +     L +L LS N   G+   I                      
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI---------------------- 192

Query: 355 ITGSLPNFGGFSSLKRLSIANNRLN---GTINKSVGQLVKLESLFLHNNSLRGVISEAFL 411
              S      F +L+ L++ N  +    G  +      V+L+ L L +NSLR        
Sbjct: 193 ---SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 412 SNLSNLTILYLADNSLT 428
              S L  L L+   L 
Sbjct: 250 DWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.2 bits (177), Expect = 9e-14
 Identities = 56/327 (17%), Positives = 89/327 (27%), Gaps = 60/327 (18%)

Query: 525 FEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDS 584
            +  +     +  +L    +  +    F   I    L  + +    +  R+     +   
Sbjct: 34  ADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG 93

Query: 585 ---LAILNLANNSFFGKIPDSIGFL--KNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG 639
              L  L L N    G  P  +      +L  L+L N                L      
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP---- 149

Query: 640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIP-- 697
                             L VLS+           Q+     +  LDLS N   G     
Sbjct: 150 -----------------GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 698 --KCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLG 755
              C   F  +       L L +    + +        +                     
Sbjct: 193 SALCPLKFPTLQ-----VLALRNAGMETPSGVCSALAAA-------------------RV 228

Query: 756 LVKILDLSSNKLGGEVPEEIMD-LAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQ 814
            ++ LDLS N L         D  + L +LNLS   L  Q+   +     L  LDLS N+
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNR 285

Query: 815 FFGSIPSSLSQLSRLSVMDLSYNNLSG 841
                PS   +L ++  + L  N    
Sbjct: 286 -LDRNPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.7 bits (173), Expect = 4e-13
 Identities = 57/333 (17%), Positives = 96/333 (28%), Gaps = 69/333 (20%)

Query: 500 IKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSI--SFLCSIT 557
              +L             +D  ++  +       L+   L +   +    I    L  + 
Sbjct: 34  ADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG 93

Query: 558 GHKLDYIDLSNNLLSGRLP-----DCWSQFDSLAILNLANNSFFGKIPDSIGFLK-NLQS 611
              L  + L N  ++G  P           + L + N++  +    + +   +LK  L+ 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 612 LSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIP---TWIGEGLVNLVVLSLKSNKF 668
           LS+                  L+ +DL  N   GE              L VL+L++   
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 669 N---GSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLA 725
               G           +Q LDLS N                      +L   +   +   
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHN----------------------SLRDAAGAPSCDW 251

Query: 726 YDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALN 785
              L +                            L+LS   L  +VP+ +   A L  L+
Sbjct: 252 PSQLNS----------------------------LNLSFTGLK-QVPKGL--PAKLSVLD 280

Query: 786 LSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGS 818
           LS N L     P   +L  +  L L  N F  S
Sbjct: 281 LSYNRLDR--NPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.9 bits (171), Expect = 6e-13
 Identities = 40/235 (17%), Positives = 71/235 (30%), Gaps = 39/235 (16%)

Query: 101 LKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLS-----KLSYLGLSNTEFAGPIP 155
           + GT    LL         L+  N S ++   ++  L       L  L ++         
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 156 LQLGNLSRLQVLDIGFNSLISGENLEW---LSHLSSLIYLDLSFSNLSKFSNWMQVLSKL 212
            Q+     L  LD+  N  +    L          +L  L L  + +   S     L   
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL--- 223

Query: 213 DSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELIN 272
                                    +   L+ + +  N+L D+      +  S L  L N
Sbjct: 224 -----------------------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL-N 259

Query: 273 LGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRG 327
           L    L+  +P+       L+ L L+ N+    P     +  + +L+L  N    
Sbjct: 260 LSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.6 bits (165), Expect = 4e-12
 Identities = 56/339 (16%), Positives = 99/339 (29%), Gaps = 48/339 (14%)

Query: 220 LISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQ 279
             SC+     P      N   + +V +  G    + +   +   +        + S  L+
Sbjct: 12  SCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLK 71

Query: 280 GSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDG 339
                      ++    + S       + L  +  L+ LTL    + G     +   +  
Sbjct: 72  RL---------TVRAARIPSRILFGALRVL-GISGLQELTLENLEVTGTAPPPLLEATG- 120

Query: 340 CTKTSLAWLFLDSNEITGSLPNFGGFS-----SLKRLSIANNRLNGTINKSVGQLVKLES 394
                L  L L +                    LK LSIA         + V     L +
Sbjct: 121 ---PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177

Query: 395 LFLHNNSLRG---VISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKI 451
           L L +N   G   +IS         L +L L +  +                        
Sbjct: 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME---------------------TP 216

Query: 452 GPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRF 511
                     + Q+  LD+S++ + D       +    L+  NLS   +K     L ++ 
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL 276

Query: 512 HPYRPGIDISSNQFEG-PIPQLPLNASFLNLSKNKFSGS 549
                 +D+S N+ +  P P        L+L  N F  S
Sbjct: 277 S----VLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 31/137 (22%), Positives = 45/137 (32%), Gaps = 13/137 (9%)

Query: 84  HVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSG------SSIPEFIGSL 137
            +  L +         C        + +   L+ LDLS N   G      +  P    +L
Sbjct: 150 GLKVLSIAQAHSLNFSC------EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203

Query: 138 SKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFS 197
             L+         +G          +LQ LD+  NSL            S L  L+LSF+
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 198 NLSK-FSNWMQVLSKLD 213
            L +        LS LD
Sbjct: 264 GLKQVPKGLPAKLSVLD 280

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.1 bits (130), Expect = 9e-08
 Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 31/234 (13%)

Query: 626 FFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIP---LQLCHLANV 682
            +  G  L  +    +  +           ++L  L++++ +    I    L++  ++ +
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 683 QILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLT 742
           Q L L +  ++G  P         T    + L L +  + +      +            
Sbjct: 98  QELTLENLEVTGTAPP---PLLEATGPDLNILNLRNVSWATRDAWLAEL----------- 143

Query: 743 WKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI--- 799
                   Q     +K+L ++         E++     L  L+LS N   G+        
Sbjct: 144 -------QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196

Query: 800 -GQLKSLDFLDLSRNQF---FGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQL 849
             +  +L  L L         G   +  +   +L  +DLS+N+L     + +  
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 79.9 bits (196), Expect = 3e-15
 Identities = 105/706 (14%), Positives = 196/706 (27%), Gaps = 212/706 (30%)

Query: 191 YLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGN 250
           Y D+       F +        D  K++                   S   ++ I++  +
Sbjct: 18  YKDILSVFEDAFVDNFDCKDVQDMPKSIL------------------SKEEIDHIIMSKD 59

Query: 251 NLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKS-- 308
            ++ ++   LF        L++     +Q    +    +  +N  FL S   +   +   
Sbjct: 60  AVSGTLR--LFWT------LLSKQEEMVQ----KFVEEVLRINYKFLMS-PIKTEQRQPS 106

Query: 309 ---------LGNMCNLKSLTLSYNTLRGD----LSEIIQNLSD----------GCTKTSL 345
                       + N   +   YN  R      L + +  L            G  KT +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 346 AWLFLDSNEITGSLP------NFGGFSSLKRLSIANNRLNGTINKSVGQLVK-LESLFLH 398
           A     S ++   +       N    +S + +     +L   I+ +         ++ L 
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 399 NNSLRGVISEAFLSNLSNLTILYLAD--NSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFP 456
            +S++  +     S      +L L +  N+            F L      SCKI     
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-------AFNL------SCKI----- 268

Query: 457 KWL---RNQNQILSLDISNSG-ISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFH 512
             L   R +     L  + +  IS    +         S      +     LP      +
Sbjct: 269 --LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 513 PYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLS 572
           P R  I I+ +  +G         ++ +++ +K +                I+ S N+L 
Sbjct: 327 PRRLSI-IAESIRDGLA----TWDNWKHVNCDKLT--------------TIIESSLNVLE 367

Query: 573 GRLPDCWSQ-FDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGS 631
              P  + + FD L++     ++    IP           LSL    +         N  
Sbjct: 368 ---PAEYRKMFDRLSVFP--PSA---HIP--------TILLSLIWFDVIKSDVMVVVN-- 409

Query: 632 QLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNN 691
                 L K  L                   ++      +I +   +      L+L    
Sbjct: 410 -----KLHKYSL-------------------VEKQPKESTISIPSIY------LELKVKL 439

Query: 692 ISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQ 751
                     N  A+ H       ++ +Y     +DS      Y D         QY Y 
Sbjct: 440 ---------ENEYAL-HRS-----IVDHYNIPKTFDSDDLIPPYLD---------QYFYS 475

Query: 752 STLG--LVKI-------------LDLS--SNKL-----GGEVPEEIMDLAGLIALNLSRN 789
             +G  L  I             LD      K+            I++   L  L   + 
Sbjct: 476 H-IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT--LQQLKFYKP 532

Query: 790 TLTGQITPKIGQLKSL--DFLDLSRNQFFGSIPSSLSQLSRLSVMD 833
                I     + + L    LD         I S  + L R+++M 
Sbjct: 533 ----YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 4e-06
 Identities = 79/480 (16%), Positives = 148/480 (30%), Gaps = 147/480 (30%)

Query: 7   LVLQYLALFSVILFDQLEPRAADSSNIIRCIDEEREALL------AFKQGLVDESGILSS 60
            VL+ L      +      R+  SSNI   I   +  L        ++  L+    +L  
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL----VL-- 250

Query: 61  WGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPC--LKGTISSSLL-ILQHLTY 117
                                  +V   +      F   C  L  T    +   L   T 
Sbjct: 251 ----L------------------NVQ--NAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 118 LDLSGNNFS-GSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLIS 176
             +S ++ S   +  E    L K  YL     +    +P ++   +  ++      S+I 
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLK--YLDCRPQD----LPREVLTTNPRRL------SII- 333

Query: 177 GENL-EWLSHLSSLIYLDLSFSNLSKFSNWMQV-LSKLDS--LKALYLISCDL---PPT- 228
            E++ + L+   +  ++     N  K +  ++  L+ L+    + ++     L   PP+ 
Sbjct: 334 AESIRDGLATWDNWKHV-----NCDKLTTIIESSLNVLEPAEYRKMFD---RLSVFPPSA 385

Query: 229 -IPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFG 287
            IP+            ++ ++          W F+V  + V ++    N+L         
Sbjct: 386 HIPT-----------ILLSLI----------W-FDVIKSDVMVV---VNKL--------- 411

Query: 288 HMPSL-------NTLFLASNQFREIPKSLGNMCNL-KSLTLSYNTLRG-DLSEIIQNLSD 338
           H  SL       +T+ + S       K   N   L +S+   YN  +  D  ++I    D
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLE-NEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

Query: 339 G------------CTKTSLAWLF----LDSNEITGSLPNFGGFSSLK-RLSIANNRLNGT 381
                                LF    LD          F  F   K R        +G+
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLD----------F-RFLEQKIRHDSTAWNASGS 519

Query: 382 INKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNL-TILYLADNS----LTLEFSHDWI 436
           I  ++ QL   +     N+     +  A L  L  +   L  +  +    + L    + I
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 76.3 bits (188), Expect = 9e-15
 Identities = 59/349 (16%), Positives = 103/349 (29%), Gaps = 77/349 (22%)

Query: 105 ISSSLLILQHLTYLDLSGNNFS---GSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNL 161
           + + LL    +  + LSGN         + E I S   L     S+        +  G +
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD--------IFTGRV 75

Query: 162 SRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSK--FSNWMQVLSKLDSLKALY 219
                       L+       L     L  + LS +          +  LSK   L+ LY
Sbjct: 76  KDEIPE--ALRLLLQA-----LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 128

Query: 220 LISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQ 279
           L +  L P               +    +   L +         +  L  +   G N+L+
Sbjct: 129 LHNNGLGP---------------QAGAKIARALQELAVNKKAKNAPPLRSI-ICGRNRLE 172

Query: 280 G----SIPEAFGHMPSLNTLFLASNQFRE------IPKSLGNMCNLKSLTLSYNTLRGD- 328
                   + F     L+T+ +  N  R       + + L     LK L L  NT     
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232

Query: 329 ---LSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKS 385
              L+  +++        +L  L L+   ++      G  + +   S   N         
Sbjct: 233 SSALAIALKSW------PNLRELGLNDCLLS----ARGAAAVVDAFSKLENI-------- 274

Query: 386 VGQLVKLESLFLHNNSLRG----VISEAFLSNLSNLTILYLADNSLTLE 430
                 L++L L  N +       +       + +L  L L  N  + E
Sbjct: 275 -----GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 40/261 (15%), Positives = 83/261 (31%), Gaps = 54/261 (20%)

Query: 291 SLNTLFLASNQF-----REIPKSLGNMCNLKSLTLSYNTLRGD--LSEIIQNLSDGCTKT 343
           S+    L  +       + +   L    ++K + LS NT+ G      + +N++      
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI-GTEAARWLSENIASKKDLE 63

Query: 344 SLAWLFLDSNEITGSLPNFGGF--------SSLKRLSIANNRLNGTINKSVGQLVK---- 391
              +  + +  +   +P               L  + +++N    T  + +   +     
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 392 LESLFLHNNS------------LRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPF 439
           LE L+LHNN             L+ +       N   L  +    N L      +W   F
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 440 Q----LSQVNLGSCKIGPR-----FPKWLRNQNQILSLDISNSGISDT--------VPNW 482
           Q    L  V +    I P        + L    ++  LD+ ++  +          + +W
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243

Query: 483 FWNQTYNLSFFNLSNNQIKGK 503
                 NL    L++  +  +
Sbjct: 244 -----PNLRELGLNDCLLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 44/193 (22%), Positives = 67/193 (34%), Gaps = 31/193 (16%)

Query: 532 LPLNASFLNLSKNKFSGSISFLCS--ITGHKLDYIDLSNNLLSGR----LPDCWSQFDSL 585
              +  F    K++   ++  L    +   KL  + LS+N         L D  S+   L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 586 AILNLANNSF-------------FGKIPDSIGFLKNLQSLSLYNNRLTGE----LPSFFT 628
             L L NN                  +         L+S+    NRL           F 
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184

Query: 629 NGSQLTLMDLGKNGLSGE-IPTWIGEGLV---NLVVLSLKSNKF--NGSIPLQ--LCHLA 680
           +   L  + + +NG+  E I   + EGL     L VL L+ N F   GS  L   L    
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244

Query: 681 NVQILDLSSNNIS 693
           N++ L L+   +S
Sbjct: 245 NLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 52/354 (14%), Positives = 105/354 (29%), Gaps = 95/354 (26%)

Query: 367 SLKRLSIANNRLNGTINKSVGQLVK----LESLFLHNNSL--RG--VISEAFLSNLSNLT 418
           S++  S+  + +     KSV  ++     ++ + L  N++       +SE  +++  +L 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN-IASKKDLE 63

Query: 419 ILYLADNSLTLEFSHDWIPP------------FQLSQVNLGSCKIGPR----FPKWLRNQ 462
           I   +D         D IP              +L  V L     GP        +L   
Sbjct: 64  IAEFSDIFTGR--VKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 463 NQILSLDISNSGISD------------TVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSR 510
             +  L + N+G+                 N        L       N+++         
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG------- 174

Query: 511 FHPYRPGIDISSNQFEGPIPQLPLNASF--LNLSKNKFS--GSISFLCSITGH--KLDYI 564
                   + +             +     + + +N     G    L     +  +L  +
Sbjct: 175 -----SMKEWAK--------TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221

Query: 565 DLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGE-- 622
           DL +N            F  L    LA          ++    NL+ L L +  L+    
Sbjct: 222 DLQDN-----------TFTHLGSSALA---------IALKSWPNLRELGLNDCLLSARGA 261

Query: 623 --LPSFFTNGSQLTL--MDLGKNGLSGEIPTWIGEGLV----NLVVLSLKSNKF 668
             +   F+    + L  + L  N +  +    +   +     +L+ L L  N+F
Sbjct: 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 38/266 (14%), Positives = 77/266 (28%), Gaps = 44/266 (16%)

Query: 609 LQSLSLYNNRLTGE----LPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLV---NLVVL 661
           ++  SL  + +T E    + +       +  + L  N +  E   W+ E +    +L + 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 662 SLKSNKFNGSIPLQ----------LCHLANVQILDLSSNNISGIIPKCFNNFTAM--THE 709
                                   L     +  + LS N      P            H 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG---PTAQEPLIDFLSKHT 122

Query: 710 KGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGG 769
              +L L +N     A   +           L       + ++   L + +    N+L  
Sbjct: 123 PLEHLYLHNNGLGPQAGAKI--------ARALQELAVNKKAKNAPPL-RSIICGRNRLEN 173

Query: 770 E----VPEEIMDLAGLIALNLSRNTLTGQ-ITPKIGQL----KSLDFLDLSRNQF----F 816
                  +       L  + + +N +  + I   + +     + L  LDL  N F     
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233

Query: 817 GSIPSSLSQLSRLSVMDLSYNNLSGK 842
            ++  +L     L  + L+   LS +
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLSAR 259

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 34/171 (19%)

Query: 262 NVSSNLVELINLGSNQLQGSIPE-AFGHMPSLNTLFLASNQFREIPK-SLGNMCNLKSLT 319
           ++ S    L +L  N L     E     + +L++L L+ N    I   +   + NL+ L 
Sbjct: 36  SLPSYTALL-DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94

Query: 320 LSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLN 379
           LS N L      +  +L       +L  L L +N I   +     F  +           
Sbjct: 95  LSSNHLHTLDEFLFSDL------QALEVLLLYNNHIV-VVDR-NAFEDM----------- 135

Query: 380 GTINKSVGQLVKLESLFLHNNSLRGVISEAF--LSNLSNLTILYLADNSLT 428
                      +L+ L+L  N +     E     + L  L +L L+ N L 
Sbjct: 136 ----------AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.5 bits (157), Expect = 6e-11
 Identities = 44/197 (22%), Positives = 73/197 (37%), Gaps = 41/197 (20%)

Query: 162 SRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLI 221
           S   +LD+  N+L         + L++L  L LS ++L+  S+  +    + +L+ L L 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS--EAFVPVPNLRYLDLS 96

Query: 222 SCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGS 281
                                       N+L  ++  +LF+    L  L  L +N +   
Sbjct: 97  ---------------------------SNHLH-TLDEFLFSDLQALEVL-LLYNNHIV-V 126

Query: 282 IPE-AFGHMPSLNTLFLASNQFREIP----KSLGNMCNLKSLTLSYNTLRGDLSEIIQNL 336
           +   AF  M  L  L+L+ NQ    P    K    +  L  L LS N L+      +Q L
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186

Query: 337 SDGCTKTSLAWLFLDSN 353
                      L+L +N
Sbjct: 187 P----AWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 8/154 (5%)

Query: 584 SLAILNLANNSFFGKIPDSIGF--LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKN 641
             A+L+L++N+   ++        L NL SL L +N L       F     L  +DL  N
Sbjct: 40  YTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 642 GLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPL-QLCHLANVQILDLSSNNISGIIPKCF 700
            L   +  ++   L  L VL L +N     +       +A +Q L LS N IS    +  
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 701 NNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKS 734
            +   +       L L SN    L    L+   +
Sbjct: 157 KDGNKLPKLM--LLDLSSNKLKKLPLTDLQKLPA 188

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.6 bits (147), Expect = 8e-10
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 14/166 (8%)

Query: 561 LDYIDLSNNLLSGRLPDCW--SQFDSLAILNLANNSFFGKIPDSI-GFLKNLQSLSLYNN 617
              +DLS+N LS RL   W  ++  +L  L L++N     I       + NL+ L L +N
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSN 98

Query: 618 RLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQ-- 675
            L       F++   L ++ L  N +   +     E +  L  L L  N+ +   P++  
Sbjct: 99  HLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELI 156

Query: 676 --LCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISN 719
                L  + +LDLSSN +  +         A        L L +N
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN---GLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 38/175 (21%)

Query: 680 ANVQILDLSSNNISGIIPKC-FNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDK 738
           +   +LDLS NN+S +  +      T +       L L  N+   ++ ++       F  
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHS-----LLLSHNHLNFISSEA-------FVP 86

Query: 739 AVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEI-MDLAGLIALNLSRNTLTGQITP 797
                          +  ++ LDLSSN L   + E +  DL  L  L L  N +   +  
Sbjct: 87  ---------------VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDR 129

Query: 798 KI-GQLKSLDFLDLSRNQFFGSIP----SSLSQLSRLSVMDLSYNNLSGKIPSGT 847
                +  L  L LS+NQ     P       ++L +L ++DLS N L  K+P   
Sbjct: 130 NAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTD 182

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 43/217 (19%), Positives = 81/217 (37%), Gaps = 24/217 (11%)

Query: 112 LQHLTYLDLSGNNFSGSSIPE--FIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDI 169
           L +L  L LS N+   + I    F+  +  L YL LS+            +L  L+VL +
Sbjct: 63  LTNLHSLLLSHNHL--NFISSEAFVP-VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119

Query: 170 GFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM-QVLSKLDSLKALYLISCDLPPT 228
             N ++  +       ++ L  L LS + +S+F   + +  +KL  L  L L S  L   
Sbjct: 120 YNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-KK 177

Query: 229 IPSSDLYLNSSTSLEVIVILGNNLTDSIYPW-----LFNVSSNLVEL----INLGSNQLQ 279
           +P +DL    +     + +  N       P      L+ + S+        +      L 
Sbjct: 178 LPLTDLQKLPAWVKNGLYLHNN-------PLECDCKLYQLFSHWQYRQLSSVMDFQEDLY 230

Query: 280 GSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLK 316
               +   ++ SL+    +  +       LG+   ++
Sbjct: 231 CMHSKKLHNIFSLDFFNCSEYKESAWEAHLGDTLTIR 267

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 41/242 (16%), Positives = 73/242 (30%), Gaps = 93/242 (38%)

Query: 392 LESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKI 451
              L L +N+L  + +E   + L+NL  L L+ N L                        
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN----------------------- 77

Query: 452 GPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKG-------KL 504
                                      + +  +    NL + +LS+N +          L
Sbjct: 78  --------------------------FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL 111

Query: 505 PNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYI 564
             L          + + +N     I  +  NA F +++                 +L  +
Sbjct: 112 QALEV--------LLLYNNH----IVVVDRNA-FEDMA-----------------QLQKL 141

Query: 565 DLSNNLLSGRLP----DCWSQFDSLAILNLANNSFFGKIPDSIGFLKNL--QSLSLYNNR 618
            LS N +S R P       ++   L +L+L++N         +  L       L L+NN 
Sbjct: 142 YLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200

Query: 619 LT 620
           L 
Sbjct: 201 LE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 47/233 (20%), Positives = 78/233 (33%), Gaps = 55/233 (23%)

Query: 608 NLQSLSLYNNRLTGELPS-FFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSN 666
               LS    +L   +P    +      L+DL  N LS     W    L NL  L L  N
Sbjct: 19  ASNILSCSKQQLP-NVPQSLPSY---TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN 74

Query: 667 KFNGSIPLQ-LCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLA 725
             N  I  +    + N++ LDLSSN++  +    F++  A+       L L +N+   + 
Sbjct: 75  HLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV-----LLLYNNHIVVVD 128

Query: 726 YDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALN 785
            ++       F+                +  ++ L LS N++                  
Sbjct: 129 RNA-------FED---------------MAQLQKLYLSQNQIS----------------R 150

Query: 786 LSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNN 838
                +         +L  L  LDLS N+      + L +L       L  +N
Sbjct: 151 FPVELIKD-----GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 59/224 (26%), Positives = 87/224 (38%), Gaps = 44/224 (19%)

Query: 225 LPPTIPSS----DLYLNSSTSLEVIVILGNNLTDSIYPWL----------FNVSSNLVEL 270
            P    +     +L   S T         N L                       N+  L
Sbjct: 13  FPDDAFAETIKANLKKKSVTDAVT----QNELNSIDQIIANNSDIKSVQGIQYLPNVRYL 68

Query: 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTLRGDL 329
             LG N+L   I  A   + +L  L L  NQ + +P      + NLK L L  N L    
Sbjct: 69  -ALGGNKLH-DIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL---- 121

Query: 330 SEIIQNLSDGCTK--TSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRL----NGT 381
               Q+L DG     T+L +L L  N++  SLP   F   ++L  L ++ N+L     G 
Sbjct: 122 ----QSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176

Query: 382 INKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
            +K    L +L+ L L+ N L+ V    F   L++L  ++L DN
Sbjct: 177 FDK----LTQLKDLRLYQNQLKSVPDGVF-DRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 18/119 (15%)

Query: 313 CNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLS 372
                  L   ++         +        S+  +  ++++I  S+       +++ L+
Sbjct: 19  AETIKANLKKKSV--------TDAVTQNELNSIDQIIANNSDIK-SVQGIQYLPNVRYLA 69

Query: 373 IANNRLNGTINKSVG---QLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
           +  N+L       +    +L  L  L L  N L+ + +  F   L+NL  L L +N L 
Sbjct: 70  LGGNKL-----HDISALKELTNLTYLILTGNQLQSLPNGVF-DKLTNLKELVLVENQLQ 122

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 47/211 (22%), Positives = 74/211 (35%), Gaps = 30/211 (14%)

Query: 530 PQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLA--- 586
                     NL K   + +++       + +D I  +N+ +             L    
Sbjct: 15  DDAFAETIKANLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQG-----IQYLPNVR 66

Query: 587 ILNLANNSFFGKIPDSIG-F--LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGL 643
            L L  N         I     L NL  L L  N+L       F   + L  + L +N L
Sbjct: 67  YLALGGNKL-----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121

Query: 644 SGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLC-HLANVQILDLSSNNISGIIPKCFNN 702
              +P  + + L NL  L+L  N+   S+P  +   L N+  LDLS N +  +    F+ 
Sbjct: 122 Q-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179

Query: 703 FTAMTHEKGSNLTLISNYYTSL---AYDSLK 730
            T +       L L  N   S+    +D L 
Sbjct: 180 LTQLKD-----LRLYQNQLKSVPDGVFDRLT 205

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 63/280 (22%), Positives = 102/280 (36%), Gaps = 69/280 (24%)

Query: 76  VNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIG 135
           +  S              Q+FP      T              +L   + +         
Sbjct: 3   ITVSTPI----------KQIFPDDAFAET-----------IKANLKKKSVT--DAVTQNE 39

Query: 136 SLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLS 195
            L+ +  +  +N++      +Q   L  ++ L +G N L     +  L  L++L YL L+
Sbjct: 40  -LNSIDQIIANNSDIKSVQGIQ--YLPNVRYLALGGNKLHD---ISALKELTNLTYLILT 93

Query: 196 FSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDS 255
            + L    N   V  KL +LK L L                N   SL             
Sbjct: 94  GNQLQSLPN--GVFDKLTNLKELVL--------------VENQLQSLP------------ 125

Query: 256 IYPWLFNVSSNLVELINLGSNQLQGSIPE-AFGHMPSLNTLFLASNQFREIPKSL-GNMC 313
               +F+  +NL  L NL  NQLQ S+P+  F  + +L  L L+ NQ + +P+ +   + 
Sbjct: 126 --DGVFDKLTNLTYL-NLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181

Query: 314 NLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSN 353
            LK L L  N L+     +   L      TSL +++L  N
Sbjct: 182 QLKDLRLYQNQLKSVPDGVFDRL------TSLQYIWLHDN 215

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 73.6 bits (180), Expect = 1e-13
 Identities = 47/323 (14%), Positives = 103/323 (31%), Gaps = 22/323 (6%)

Query: 68  RDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSG 127
           R   G    +      HV + +  +   F  P   G+   +LL++     L +      G
Sbjct: 233 RWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDG 292

Query: 128 SSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLS 187
            + P  +      +              +  G+ S+ + + +         +      L 
Sbjct: 293 RNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLF 352

Query: 188 SLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPP----TIPSSDLYLNSSTSLE 243
                    + L       + L +L+      L++  L       +      L   ++L+
Sbjct: 353 RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 412

Query: 244 VIVILGNNLTDSI------YPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFL 297
            +  +     D +         +  +    V +++L    L  ++      +  +  L L
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDL 470

Query: 298 ASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITG 357
           + N+ R +P +L  +  L+ L  S N L  ++   + NL        L  L L +N +  
Sbjct: 471 SHNRLRALPPALAALRCLEVLQASDNALE-NVDG-VANL------PRLQELLLCNNRLQQ 522

Query: 358 --SLPNFGGFSSLKRLSIANNRL 378
             ++        L  L++  N L
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.5 bits (151), Expect = 5e-10
 Identities = 52/284 (18%), Positives = 82/284 (28%), Gaps = 41/284 (14%)

Query: 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR 618
             L    L++ L        W+  DS     L  +       D     + L    L   +
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFRCELSVEK 360

Query: 619 LTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCH 678
            T  L S   +  +L  ++         I          L++ +L    +          
Sbjct: 361 ST-VLQSELESCKELQELEPENKWCLLTI---------ILLMRALDPLLYEKETLQYFST 410

Query: 679 LANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDK 738
           L  V  +  +  +         N+   M +     L L     T L              
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-------------- 456

Query: 739 AVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK 798
                      +   L LV  LDLS N+L   +P  +  L  L  L  S N L       
Sbjct: 457 ----------CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--NVDG 503

Query: 799 IGQLKSLDFLDLSRNQFFGSIPS--SLSQLSRLSVMDLSYNNLS 840
           +  L  L  L L  N+      +   L    RL +++L  N+L 
Sbjct: 504 VANLPRLQELLLCNNRL-QQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.0 bits (142), Expect = 5e-09
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 11/111 (9%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSN---TEFAGPIPLQLGNLSRLQVLD 168
           L  +T+LDLS N     ++P  + +L  L  L  S+       G     + NL RLQ L 
Sbjct: 462 LLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVDG-----VANLPRLQELL 514

Query: 169 IGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSN-WMQVLSKLDSLKAL 218
           +  N L     ++ L     L+ L+L  ++L +      ++   L S+ ++
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 6e-07
 Identities = 35/266 (13%), Positives = 72/266 (27%), Gaps = 63/266 (23%)

Query: 431 FSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNL 490
           +  D     QL +  L S +        L +  ++  L+  N     T           L
Sbjct: 341 WCRDSATDEQLFRCEL-SVEKSTVLQSELESCKELQELEPENKWCLLT----IILLMRAL 395

Query: 491 SFFNLSNNQIKG--KLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSG 548
                    ++    L  +      Y   +          +     +   L+L+    + 
Sbjct: 396 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT- 454

Query: 549 SISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKN 608
            +  L  +    + ++DLS+N L                           +P ++  L+ 
Sbjct: 455 VLCHLEQLL--LVTHLDLSHNRLR-------------------------ALPPALAALRC 487

Query: 609 LQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKF 668
           L+ L   +N L   +                               L  L  L L +N+ 
Sbjct: 488 LEVLQASDNALE-NVDGV--------------------------ANLPRLQELLLCNNRL 520

Query: 669 NG-SIPLQLCHLANVQILDLSSNNIS 693
              +    L     + +L+L  N++ 
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 5e-06
 Identities = 39/312 (12%), Positives = 88/312 (28%), Gaps = 45/312 (14%)

Query: 393 ESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIG 452
           +S + +    R ++  A   ++     +   +  L++ FS   +         L      
Sbjct: 226 QSAWFY---HRWLLGRAEPHDVLCCVHVSREEACLSVCFSR-PLTVGSRMGTLLLMVDEA 281

Query: 453 PRFPKWL---------RNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGK 503
           P   +W                L     N  +        W  + +     L  ++ +  
Sbjct: 282 PLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW 341

Query: 504 LPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDY 563
             + ++    +R   ++S  +      +L        L        ++ +  +    LD 
Sbjct: 342 CRDSATDEQLFR--CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR--ALDP 397

Query: 564 IDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGEL 623
           +      L              A L+   + F  +         +++ L L +  LT  L
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VL 456

Query: 624 PSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQ 683
                                        E L+ +  L L  N+   ++P  L  L  ++
Sbjct: 457 CHL--------------------------EQLLLVTHLDLSHNRLR-ALPPALAALRCLE 489

Query: 684 ILDLSSNNISGI 695
           +L  S N +  +
Sbjct: 490 VLQASDNALENV 501

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 42/262 (16%), Positives = 78/262 (29%), Gaps = 39/262 (14%)

Query: 77  NCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGS 136
              +    ++       +                  + L   +LS    +   +   + S
Sbjct: 313 LPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST--VLQSELES 370

Query: 137 LSKLSYLGLSNT-------------EFAGPIPLQLGNLSRLQVLDI-------GFNSLIS 176
             +L  L   N              +        L   S L+ +D           S   
Sbjct: 371 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 430

Query: 177 GENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYL 236
            EN       + +  L L+  +L+   +    L +L  +  L L    L   +P +   L
Sbjct: 431 LENSVLKMEYADVRVLHLAHKDLTVLCH----LEQLLLVTHLDLSHNRLR-ALPPA---L 482

Query: 237 NSSTSLEVIVILGNNLTDSIYPWLFNVSS--NLVELINLGSNQLQG-SIPEAFGHMPSLN 293
            +   LEV+    N L +     +  V++   L EL  L +N+LQ  +  +     P L 
Sbjct: 483 AALRCLEVLQASDNALEN-----VDGVANLPRLQEL-LLCNNRLQQSAAIQPLVSCPRLV 536

Query: 294 TLFLASNQFREIPKSLGNMCNL 315
            L L  N   +       +  +
Sbjct: 537 LLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.9 bits (108), Expect = 5e-05
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 770 EVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRL 829
           E     M+ A +  L+L+   LT  +   + QL  +  LDLS N+   ++P +L+ L  L
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCL 488

Query: 830 SVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNELCGLP 866
            V+  S N L   +     L      +   N L    
Sbjct: 489 EVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQSA 524

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 295 LFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNE 354
           + L +    +      N    + L L    +      +I+NL     +     +    NE
Sbjct: 2   VKLTAELIEQAA-QYTNAVRDRELDLRGYKI-----PVIENLGATLDQ--FDAIDFSDNE 53

Query: 355 ITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
           I   L  F     LK L + NNR+          L  L  L L NNSL  +     L++L
Sbjct: 54  IR-KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 112

Query: 415 SNLTILYLADNSLT 428
            +LT L +  N +T
Sbjct: 113 KSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGF 171
           L     +D S N      + +    L +L  L ++N             L  L  L +  
Sbjct: 41  LDQFDAIDFSDNEIR--KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 172 NSLISGENLEWLSHLSSLIYLDLSFSNLSKFSN-WMQVLSKLDSLKAL 218
           NSL+   +L+ L+ L SL YL +  + ++   +  + V+ K+  ++ L
Sbjct: 98  NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 13/88 (14%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 606 LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKS 665
               + L L   ++   + +      Q   +D   N +  ++  +    L  L  L + +
Sbjct: 18  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGF--PLLRRLKTLLVNN 73

Query: 666 NKFNGSIPLQLCHLANVQILDLSSNNIS 693
           N+           L ++  L L++N++ 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 539 LNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGK 598
           L+L   K    I  L + T  + D ID S+N +  +L D +     L  L + NN     
Sbjct: 24  LDLRGYKIP-VIENLGA-TLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRI 79

Query: 599 IPDSIGFLKNLQSLSLYNNRLT 620
                  L +L  L L NN L 
Sbjct: 80  GEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 39/160 (24%)

Query: 166 VLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDL 225
           ++ +    +          +      LDL    +    N    L + D++          
Sbjct: 1   MVKLTAELIEQAAQYT---NAVRDRELDLRGYKIPVIENLGATLDQFDAI---------- 47

Query: 226 PPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEA 285
                  D   N    L+   +L                  L  L  + +N++       
Sbjct: 48  -------DFSDNEIRKLDGFPLL----------------RRLKTL-LVNNNRICRIGEGL 83

Query: 286 FGHMPSLNTLFLASNQFREIP--KSLGNMCNLKSLTLSYN 323
              +P L  L L +N   E+     L ++ +L  L +  N
Sbjct: 84  DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 30/151 (19%), Positives = 43/151 (28%), Gaps = 36/151 (23%)

Query: 157 QLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLK 216
           Q  N  R + LD+    +   ENL   + L     +D S + + K          L  LK
Sbjct: 14  QYTNAVRDRELDLRGYKIPVIENLG--ATLDQFDAIDFSDNEIRKLDG----FPLLRRLK 67

Query: 217 ALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSN 276
            L +                             NN    I   L     +L EL  L +N
Sbjct: 68  TLLV----------------------------NNNRICRIGEGLDQALPDLTEL-ILTNN 98

Query: 277 QLQG-SIPEAFGHMPSLNTLFLASNQFREIP 306
            L      +    + SL  L +  N      
Sbjct: 99  SLVELGDLDPLASLKSLTYLCILRNPVTNKK 129

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 31/159 (19%)

Query: 268 VELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLR 326
           +  I L  N ++   P AF     L  + L++NQ  E+   +   + +L SL L  N + 
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 327 GDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSV 386
                + + L       SL  L L++N+I   L     F  L                  
Sbjct: 94  ELPKSLFEGL------FSLQLLLLNANKIN-CLRV-DAFQDLH----------------- 128

Query: 387 GQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
                L  L L++N L+ +    F S L  +  ++LA N
Sbjct: 129 ----NLNLLSLYDNKLQTIAKGTF-SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 12/118 (10%)

Query: 314 NLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRL 371
            +  + L  NT++                  L  + L +N+I+  L    F G  SL  L
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPY------KKLRRIDLSNNQIS-ELAPDAFQGLRSLNSL 85

Query: 372 SIANNRLNGTINKSV-GQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
            +  N++   + KS+   L  L+ L L+ N +  +  +AF  +L NL +L L DN L 
Sbjct: 86  VLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAF-QDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 5/131 (3%)

Query: 562 DYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGF--LKNLQSLSLYNNRL 619
             I L  N +    P  +S +  L  ++L+NN    ++     F  L++L SL LY N++
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDA-FQGLRSLNSLVLYGNKI 92

Query: 620 TGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHL 679
           T    S F     L L+ L  N ++  +     + L NL +LSL  NK           L
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 680 ANVQILDLSSN 690
             +Q + L+ N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 10/134 (7%)

Query: 192 LDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNN 251
           + L  + +          S    L+ + L +  +   +           SL  +V+ GN 
Sbjct: 37  IRLEQNTIKVIPPG--AFSPYKKLRRIDLSNNQIS-ELAPD--AFQGLRSLNSLVLYGNK 91

Query: 252 LTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE-AFGHMPSLNTLFLASNQFREIPK-SL 309
           +T  +   LF    +L  L  L +N++   +   AF  + +LN L L  N+ + I K + 
Sbjct: 92  IT-ELPKSLFEGLFSLQLL-LLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 310 GNMCNLKSLTLSYN 323
             +  ++++ L+ N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 8/138 (5%)

Query: 165 QVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCD 224
             + +  N++         S    L  +DLS + +S+ +        L SL +L L    
Sbjct: 35  TEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNNQISELAP--DAFQGLRSLNSLVLYGNK 91

Query: 225 LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE 284
           +   +P S        SL+++++  N +   +    F    NL  L +L  N+LQ     
Sbjct: 92  IT-ELPKSLF--EGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLL-SLYDNKLQTIAKG 146

Query: 285 AFGHMPSLNTLFLASNQF 302
            F  + ++ T+ LA N F
Sbjct: 147 TFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 35/161 (21%), Positives = 58/161 (36%), Gaps = 32/161 (19%)

Query: 680 ANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKA 739
             +  + L  N I  I P  F+ +  +       + L +N  + LA D+       F   
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRR-----IDLSNNQISELAPDA-------FQG- 78

Query: 740 VLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD-LAGLIALNLSRNTLTGQITPK 798
                         L  +  L L  NK+  E+P+ + + L  L  L L+ N +   +   
Sbjct: 79  --------------LRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKIN-CLRVD 122

Query: 799 IGQ-LKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNN 838
             Q L +L+ L L  N+       + S L  +  M L   N
Sbjct: 123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL-AQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 32/183 (17%), Positives = 57/183 (31%), Gaps = 54/183 (29%)

Query: 608 NLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNK 667
            +  + L  N +    P  F+   +L  +DL  N +S                  L  + 
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-----------------ELAPDA 75

Query: 668 FNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYD 727
           F          L ++  L L  N I+ +    F    ++       L L +N    L  D
Sbjct: 76  FQ--------GLRSLNSLVLYGNKITELPKSLFEGLFSLQL-----LLLNANKINCLRVD 122

Query: 728 SLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD-LAGLIALNL 786
           +       F                 L  + +L L  NKL   + +     L  +  ++L
Sbjct: 123 A-------FQD---------------LHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHL 159

Query: 787 SRN 789
           ++N
Sbjct: 160 AQN 162

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 45/266 (16%), Positives = 85/266 (31%), Gaps = 44/266 (16%)

Query: 114 HLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNS 173
                 ++  +     IP    S   L    L  T           NL  +  + +  + 
Sbjct: 12  QEEDFRVTCKDIQ--RIPSLPPSTQTLK---LIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 174 LISGENLEWLSHLSSLIYLDLSFSN-LSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSS 232
            +         +LS + ++++  +  L+        L +L  LK L +            
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP--DALKELPLLKFLGIF----------- 113

Query: 233 DLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE-AFGHMPS 291
                              L           S+++  ++ +  N    SIP  AF  + +
Sbjct: 114 ----------------NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN 156

Query: 292 -LNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFL 350
              TL L +N F  +     N   L ++ L+ N     L+ I ++   G   +  + L +
Sbjct: 157 ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK---YLTVIDKDAFGGV-YSGPSLLDV 212

Query: 351 DSNEITGSLPNFGGFSSLKRLSIANN 376
               +T +LP+  G   LK L   N 
Sbjct: 213 SQTSVT-ALPS-KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 40/222 (18%)

Query: 529 IPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLP-DCWSQFDSLAI 587
           IP LP +   L L +     +I          +  I +S ++   +L    +     +  
Sbjct: 26  IPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTH 84

Query: 588 LNLANNSFFGKIPDSI-GFLKNLQSLSLYNNRLTGELP--SFFTNGSQLTLMDLGKNGLS 644
           + + N      I       L  L+ L ++N  L    P  +   +     ++++  N   
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYM 143

Query: 645 GEIPTWIGEGLVN-LVVLSLKSNK--------FNGSIPLQLCHLANVQI----------- 684
             IP    +GL N  + L L +N         FNG+    +    N  +           
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 685 ------LDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNY 720
                 LD+S  +++ +  K   +           L   + +
Sbjct: 204 YSGPSLLDVSQTSVTALPSKGLEHLK--------ELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 31/213 (14%), Positives = 71/213 (33%), Gaps = 16/213 (7%)

Query: 294 TLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSN 353
              +     + IP       + ++L L    LR   S    NL       +++ +++  +
Sbjct: 15  DFRVTCKDIQRIP---SLPPSTQTLKLIETHLRTIPSHAFSNL------PNISRIYVSID 65

Query: 354 EITGSLPN--FGGFSSLKRLSIANNRLNGTINKSV-GQLVKLESLFLHNNSLRGVISEAF 410
                L +  F   S +  + I N R    I+     +L  L+ L + N  L+       
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125

Query: 411 LSNLSNLTILYLADNSLTLEFSHDWIP--PFQLSQVNLGSCKIGPRFPKWLRNQNQILSL 468
           + +     IL + DN        +       +   + L +         +  N  ++ ++
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAV 184

Query: 469 DIS-NSGISDTVPNWFWNQTYNLSFFNLSNNQI 500
            ++ N  ++    + F       S  ++S   +
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 36/231 (15%), Positives = 72/231 (31%), Gaps = 32/231 (13%)

Query: 604 GFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSL 663
               + Q+L L    L       F+N   ++ + +  +    ++ +     L  +  + +
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 664 KSNKFNGSIPLQ-LCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYY- 721
           ++ +    I    L  L  ++ L + +  +           T +       L +  N Y 
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFI----LEITDNPYM 143

Query: 722 TSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGL 781
           TS+  ++                      Q        L L +N     V     +   L
Sbjct: 144 TSIPVNAF---------------------QGLCNETLTLKLYNNGF-TSVQGYAFNGTKL 181

Query: 782 IALNLSRNTLTGQITPKI--GQLKSLDFLDLSRNQFFGSIPS-SLSQLSRL 829
            A+ L++N     I      G       LD+S+     ++PS  L  L  L
Sbjct: 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 33/223 (14%), Positives = 64/223 (28%), Gaps = 40/223 (17%)

Query: 631 SQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSN 690
            Q     +    +   IP+       +   L L              +L N+  + +S +
Sbjct: 11  HQEEDFRVTCKDIQ-RIPS----LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 691 N-ISGIIPKCFNNFTAMTHEKGSNLTLISNYY-TSLAYDSLKTTKSYFDKAVLTWKGSQY 748
             +  +    F N + +TH     + + +    T +  D+         +          
Sbjct: 66  VTLQQLESHSFYNLSKVTH-----IEIRNTRNLTYIDPDA-------LKE---------- 103

Query: 749 EYQSTLGLVKILDLSSNKLGGEVPEE--IMDLAGLIALNLSRNTLTGQITPKI--GQLKS 804
                L L+K L + +  L    P+   +        L ++ N     I      G    
Sbjct: 104 -----LPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157

Query: 805 LDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGT 847
              L L  N F  S+       ++L  + L+ N     I    
Sbjct: 158 TLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 65.1 bits (159), Expect = 5e-12
 Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 10/144 (6%)

Query: 295 LFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNE 354
           L        ++  +L  +   K L LS N +     E I +L  G     L  L L  N 
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTNNI-----EKISSL-SGMEN--LRILSLGRNL 81

Query: 355 ITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
           I           +L+ L I+ N++  ++   + +LV L  L++ NN +        L+ L
Sbjct: 82  IKKIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 415 SNLTILYLADNSLTLEFSHDWIPP 438
             L  L LA N L  ++  +    
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 8/116 (6%)

Query: 105 ISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRL 164
           + ++L  L+   +L LS NN     I   +  +  L  L L          L       L
Sbjct: 40  MDATLSTLKACKHLALSTNNI--EKI-SSLSGMENLRILSLGRNLIKKIENLD-AVADTL 95

Query: 165 QVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYL 220
           + L I +N +    +L  +  L +L  L +S + ++ +   +  L+ LD L+ L L
Sbjct: 96  EELWISYNQI---ASLSGIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLL 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 30/152 (19%), Positives = 65/152 (42%), Gaps = 16/152 (10%)

Query: 110 LILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSN---TEFAGPIPLQLGNLSRLQV 166
           ++      ++L G       +   + +L    +L LS     + +      L  +  L++
Sbjct: 20  VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRI 74

Query: 167 LDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLP 226
           L +G N +   ENL+ ++   +L  L +S++ ++  S     + KL +L+ LY+ +  + 
Sbjct: 75  LSLGRNLIKKIENLDAVAD--TLEELWISYNQIASLSG----IEKLVNLRVLYMSNNKI- 127

Query: 227 PTIPSSDLYLNSSTSLEVIVILGNNLTDSIYP 258
            T       L +   LE +++ GN L +    
Sbjct: 128 -TNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 13/114 (11%)

Query: 265 SNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNT 324
                L  L +N ++  I  +   M +L  L L  N  ++I         L+ L +SYN 
Sbjct: 48  KACKHL-ALSTNNIE-KI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ 104

Query: 325 LRGDLSEIIQNLSDGCTKTSLAWLFLDSNEIT--GSLPNFGGFSSLKRLSIANN 376
           +       +  + +      L  L++ +N+IT  G +        L+ L +A N
Sbjct: 105 I-----ASLSGI-EKLVN--LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 18/118 (15%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSN---TEFAGPIPLQLGNLSRLQVLD 168
           +++L  L L  N      I         L  L +S       +G     +  L  L+VL 
Sbjct: 69  MENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLY 121

Query: 169 IGFNSLISGENLEWLSHLSSLIYLDLS--------FSNLSKFSNWMQVLSKLDSLKAL 218
           +  N + +   ++ L+ L  L  L L+          N +     ++V+ +L +LK L
Sbjct: 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 25/172 (14%), Positives = 49/172 (28%), Gaps = 63/172 (36%)

Query: 154 IPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLD 213
           +   L  L   + L +  N++   E +  LS + +L  L L  + + K  N   V   L+
Sbjct: 40  MDATLSTLKACKHLALSTNNI---EKISSLSGMENLRILSLGRNLIKKIENLDAVADTLE 96

Query: 214 SLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINL 273
            L                                               +S N +  +  
Sbjct: 97  EL----------------------------------------------WISYNQIASL-- 108

Query: 274 GSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP--KSLGNMCNLKSLTLSYN 323
                          + +L  L++++N+         L  +  L+ L L+ N
Sbjct: 109 ----------SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 322 YNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGT 381
             T++  +    +  S   T+     L      I           + K L+++ N +   
Sbjct: 4   ATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-EK 62

Query: 382 INKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
           I  S+  +  L  L L  N ++ +  E   +    L  L+++ N + 
Sbjct: 63  I-SSLSGMENLRILSLGRNLIKKI--ENLDAVADTLEELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 539 LNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGK 598
           L LS N     IS L  +    L  + L  NL+  ++ +  +  D+L  L ++ N     
Sbjct: 53  LALSTNNIE-KISSLSGME--NLRILSLGRNLIK-KIENLDAVADTLEELWISYN-QIAS 107

Query: 599 IPDSIGFLKNLQSLSLYNNRLT 620
           +   I  L NL+ L + NN++T
Sbjct: 108 L-SGIEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 39/136 (28%)

Query: 382 INKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQL 441
           ++ ++  L   + L L  N++  +   + LS + NL IL L  N +              
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKI---SSLSGMENLRILSLGRNLIK------------- 83

Query: 442 SQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK 501
                       +        + +  L IS + I+         +  NL    +SNN+I 
Sbjct: 84  ------------KIENLDAVADTLEELWISYNQIASLSG---IEKLVNLRVLYMSNNKIT 128

Query: 502 --------GKLPNLSS 509
                     L  L  
Sbjct: 129 NWGEIDKLAALDKLED 144

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 752 STLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLS 811
           STL   K L LS+N +  E    +  +  L  L+L RN +  +I        +L+ L +S
Sbjct: 45  STLKACKHLALSTNNI--EKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWIS 101

Query: 812 RNQFFGSIPSSLSQLSRLSVMDLSYNNLS 840
            NQ   +  S + +L  L V+ +S N ++
Sbjct: 102 YNQI--ASLSGIEKLVNLRVLYMSNNKIT 128

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 37/205 (18%)

Query: 226 PPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE- 284
           P  IP+    L+          L +    ++    F   + L  L NL  NQLQ ++   
Sbjct: 30  PSGIPADTEKLD----------LQSTGLATLSDATFRGLTKLTWL-NLDYNQLQ-TLSAG 77

Query: 285 AFGHMPSLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYNTLRGDLSEIIQNLSDG-CTK 342
            F  +  L TL LA+NQ   +P  +  ++  L  L L  N L        ++L  G   +
Sbjct: 78  VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL--------KSLPSGVFDR 129

Query: 343 -TSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHN 399
            T L  L L++N++  S+P   F   ++L+ LS++ N+L    + +  +L KL+++ L  
Sbjct: 130 LTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188

Query: 400 NSLRGVISEAFLSNLSNLTILYLAD 424
           N            + S   ILYL+ 
Sbjct: 189 NQF----------DCSRCEILYLSQ 203

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 10/157 (6%)

Query: 565 DLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSI-GFLKNLQSLSLYNNRLTGEL 623
           DL +  L+      +     L  LNL  N     +   +   L  L +L L NN+L    
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 624 PSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLC-HLANV 682
              F + +QL  + LG N L   +P+ + + L  L  L L +N+   SIP      L N+
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNL 157

Query: 683 QILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISN 719
           Q L LS+N +  +    F+    +       +TL  N
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQT-----ITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 11/124 (8%)

Query: 610 QSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFN 669
           + L L +  L     + F   ++LT ++L  N L   +   + + L  L  L L +N+  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96

Query: 670 GSIPLQL-CHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSL---A 725
            S+PL +  HL  +  L L  N +  +    F+  T +       L L +N   S+   A
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE-----LRLNTNQLQSIPAGA 150

Query: 726 YDSL 729
           +D L
Sbjct: 151 FDKL 154

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 11/147 (7%)

Query: 588 LNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEI 647
           L+L +         +   L  L  L+L  N+L       F + ++L  + L  N L+  +
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98

Query: 648 PTWIGEGLVNLVVLSLKSNKFNGSIPLQLC-HLANVQILDLSSNNISGIIPKCFNNFTAM 706
           P  + + L  L  L L  N+   S+P  +   L  ++ L L++N +  I    F+  T +
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 707 THEKGSNLTLISNYYTSL---AYDSLK 730
                  L+L +N   S+   A+D L 
Sbjct: 158 QT-----LSLSTNQLQSVPHGAFDRLG 179

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 16/164 (9%)

Query: 192 LDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNN 251
           LDL  + L+  S+       L  L  L L    L  T+ +     +  T L  + +  N 
Sbjct: 40  LDLQSTGLATLSD--ATFRGLTKLTWLNLDYNQLQ-TLSAG--VFDDLTELGTLGLANNQ 94

Query: 252 LTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE-AFGHMPSLNTLFLASNQFREIPKSL- 309
           L  S+   +F+  + L +L  LG NQL+ S+P   F  +  L  L L +NQ + IP    
Sbjct: 95  LA-SLPLGVFDHLTQLDKL-YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151

Query: 310 GNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSN 353
             + NL++L+LS N L+         L        L  + L  N
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRL------GKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 348 LFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVI 406
           L L S  +       F G + L  L++  N+L          L +L +L L NN L  + 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 407 SEAFLSNLSNLTILYLADNSLT 428
              F   L+ L  LYL  N L 
Sbjct: 100 LGVFDH-LTQLDKLYLGGNQLK 120

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 44/176 (25%), Positives = 64/176 (36%), Gaps = 46/176 (26%)

Query: 680 ANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSL---AYDSLKTTKSYF 736
           A+ + LDL S  ++ +    F   T +T      L L  N   +L    +D L       
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTW-----LNLDYNQLQTLSAGVFDDLTEL---- 85

Query: 737 DKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD-LAGLIALNLSRNTLTGQI 795
                                  L L++N+L   +P  + D L  L  L L  N L   +
Sbjct: 86  ---------------------GTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKS-L 122

Query: 796 TPKI-GQLKSLDFLDLSRNQFFGSIPS----SLSQLSRLSVMDLSYNNLSGKIPSG 846
              +  +L  L  L L+ NQ   SIP+     L+ L  L    LS N L   +P G
Sbjct: 123 PSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTL---SLSTNQLQ-SVPHG 173

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 51/188 (27%), Positives = 71/188 (37%), Gaps = 35/188 (18%)

Query: 116 TYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLI 175
             LDL     +  S   F G L+KL++L L   +          +L+ L  L +  N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRG-LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96

Query: 176 SGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLY 235
           S     +  HL+ L  L L  + L    +   V  +L  LK L L               
Sbjct: 97  SLPLGVF-DHLTQLDKLYLGGNQLKSLPSG--VFDRLTKLKELRL--------------- 138

Query: 236 LNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE-AFGHMPSLNT 294
                          N   SI    F+  +NL  L +L +NQLQ S+P  AF  +  L T
Sbjct: 139 -------------NTNQLQSIPAGAFDKLTNLQTL-SLSTNQLQ-SVPHGAFDRLGKLQT 183

Query: 295 LFLASNQF 302
           + L  NQF
Sbjct: 184 ITLFGNQF 191

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 43/217 (19%), Positives = 77/217 (35%), Gaps = 28/217 (12%)

Query: 288 HMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAW 347
            + +     L      ++  S   +  +++     +         IQ+L+     T+L  
Sbjct: 17  GLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNS--------NIQSLAGMQFFTNLKE 67

Query: 348 LFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVIS 407
           L L  N+I+  L      + L+ LS+  NRL    N +      L  LFL NN LR   S
Sbjct: 68  LHLSHNQIS-DLSPLKDLTKLEELSVNRNRLK---NLNGIPSACLSRLFLDNNELRDTDS 123

Query: 408 EAFLSNLSNLTILYLADNSLTLEFSHDWIPPF----QLSQVNLGSCKIGPRFPKWLRNQN 463
              L +L NL IL + +N L        I       +L  ++L   +I       L    
Sbjct: 124 ---LIHLKNLEILSIRNNKLKS------IVMLGFLSKLEVLDLHGNEI--TNTGGLTRLK 172

Query: 464 QILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQI 500
           ++  +D++     +    +        +  +     I
Sbjct: 173 KVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWI 209

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 26/207 (12%)

Query: 132 EFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIY 191
                L+      L        +  +   LS +Q  +   +++   ++L  +   ++L  
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNI---QSLAGMQFFTNLKE 67

Query: 192 LDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNN 251
           L LS + +S  S     L  L  L+ L +    L       +L    S  L  + +  N 
Sbjct: 68  LHLSHNQISDLSP----LKDLTKLEELSVNRNRL------KNLNGIPSACLSRLFLDNNE 117

Query: 252 LTDSIYPWLFNVSS--NLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSL 309
           L D       ++    NL  L ++ +N+L+ SI    G +  L  L L  N+       L
Sbjct: 118 LRD-----TDSLIHLKNLEIL-SIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITNT-GGL 168

Query: 310 GNMCNLKSLTLSYNTLRGDLSEIIQNL 336
             +  +  + L+      +  +    L
Sbjct: 169 TRLKKVNWIDLTGQKCVNEPVKYQPEL 195

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 43/218 (19%), Positives = 81/218 (37%), Gaps = 36/218 (16%)

Query: 489 NLSFFNLSNNQIK-----GKLPNLSSRFHPYRPGIDISSNQFE--GPIPQLPLNASFLNL 541
           N    NL    +       +L  + +         +  ++  +    +     N   L+L
Sbjct: 20  NAVKQNLGKQSVTDLVSQKELSGVQN--------FNGDNSNIQSLAGMQFFT-NLKELHL 70

Query: 542 SKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPD 601
           S N+ S  +S L  +T  KL+ + ++ N L             L+ L L NN    ++ D
Sbjct: 71  SHNQIS-DLSPLKDLT--KLEELSVNRNRLKNLNG---IPSACLSRLFLDNN----ELRD 120

Query: 602 --SIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLV 659
             S+  LKNL+ LS+ NN+L   +       S+L ++DL  N ++          L  + 
Sbjct: 121 TDSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITNTGGL---TRLKKVN 175

Query: 660 VLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIP 697
            + L   K    +   + +   + I +   +     I 
Sbjct: 176 WIDLTGQKC---VNEPVKYQPELYITNTVKDPDGRWIS 210

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 19/167 (11%)

Query: 107 SSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQV 166
           + +    +L  L LS N    S +   +  L+KL  L ++         +       L  
Sbjct: 57  AGMQFFTNLKELHLSHNQI--SDL-SPLKDLTKLEELSVNRNRLKNLNGIPSAC---LSR 110

Query: 167 LDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLP 226
           L +  N L    + + L HL +L  L +  + L         L  L  L+ L L   ++ 
Sbjct: 111 LFLDNNEL---RDTDSLIHLKNLEILSIRNNKLKSIVM----LGFLSKLEVLDLHGNEI- 162

Query: 227 PTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFN-VSSNLVELIN 272
               ++   L     +  I + G    +    +      +N V+  +
Sbjct: 163 ----TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPD 205

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 67/235 (28%)

Query: 606 LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKS 665
           L N    +L    +T          S +   +   + +   +     +   NL  L L  
Sbjct: 18  LANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQ-SLAGM--QFFTNLKELHLSH 72

Query: 666 NKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLA 725
           N+ +   PL+   L  ++ L ++ N +  +                 +  L         
Sbjct: 73  NQISDLSPLK--DLTKLEELSVNRNRLKNL-------------NGIPSACL--------- 108

Query: 726 YDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALN 785
                                             L L +N+L     + ++ L  L  L+
Sbjct: 109 --------------------------------SRLFLDNNEL--RDTDSLIHLKNLEILS 134

Query: 786 LSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLS 840
           +  N L   I   +G L  L+ LDL  N+   +    L++L +++ +DL+     
Sbjct: 135 IRNNKLK-SIVM-LGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 45/220 (20%)

Query: 653 EGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGS 712
            GL N V  +L        +  +   L+ VQ  +  ++NI  +       FT +      
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAG--MQFFTNLKE---- 67

Query: 713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVP 772
            L L  N  + L                             L  ++ L ++ N+L     
Sbjct: 68  -LHLSHNQISDL------------------------SPLKDLTKLEELSVNRNRL----- 97

Query: 773 EEIMDLAG--LIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLS 830
           + +  +    L  L L  N L       +  LK+L+ L +  N+        L  LS+L 
Sbjct: 98  KNLNGIPSACLSRLFLDNNELR-DTDS-LIHLKNLEILSIRNNKL--KSIVMLGFLSKLE 153

Query: 831 VMDLSYNNLSGKIPSGTQLQSFSTSMYAGNELCGLPLPNK 870
           V+DL  N ++      T+L+  +     G +    P+  +
Sbjct: 154 VLDLHGNEIT-NTGGLTRLKKVNWIDLTGQKCVNEPVKYQ 192

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 311 NMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKR 370
              ++K L L  +      S   +          L +L   +  +T S+ N    + LK+
Sbjct: 15  TPSDVKELVLDNSR-----SNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKK 68

Query: 371 LSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
           L +++NR++G +     +   L  L L  N ++ + +   L  L NL  L L +  +T
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 4/131 (3%)

Query: 89  DLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNT 148
           D+  L +  S   +G +       + L +L       +  SI   +  L+KL  L LS+ 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SI-ANLPKLNKLKKLELSDN 74

Query: 149 EFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSN-WMQ 207
             +G + +       L  L++  N +     +E L  L +L  LDL    ++  ++    
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYREN 134

Query: 208 VLSKLDSLKAL 218
           V   L  L  L
Sbjct: 135 VFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 9/114 (7%)

Query: 265 SNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNT 324
           S++ EL+   S   +G +         L  L   +     I  +L  +  LK L LS N 
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR 75

Query: 325 LRGDLSEIIQNLSDGCTKTSLAWLFLDSNEIT--GSLPNFGGFSSLKRLSIANN 376
               +S  ++ L++ C   +L  L L  N+I    ++       +LK L + N 
Sbjct: 76  ----VSGGLEVLAEKC--PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 538 FLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFG 597
           FL+      + SI+ L  +   KL  ++LS+N +SG L     +  +L  LNL+ N    
Sbjct: 46  FLSTINVGLT-SIANLPKLN--KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD 102

Query: 598 -KIPDSIGFLKNLQSLSLYNNRLT 620
               + +  L+NL+SL L+N  +T
Sbjct: 103 LSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 2/99 (2%)

Query: 568 NNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFF 627
           +    G+L     +F+ L  L+  N      I + +  L  L+ L L +NR++G L    
Sbjct: 27  SRSNEGKLEGLTDEFEELEFLSTINVGL-TSIAN-LPKLNKLKKLELSDNRVSGGLEVLA 84

Query: 628 TNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSN 666
                LT ++L  N +         + L NL  L L + 
Sbjct: 85  EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSN---TEFAGPIPLQLGNLSRLQVLD 168
              +  L L  +  +   +        +L +L   N   T  A      L  L++L+ L+
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-----LPKLNKLKKLE 70

Query: 169 IGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISC 223
           +  N +  G  +       +L +L+LS + +   S   + L KL++LK+L L +C
Sbjct: 71  LSDNRVSGGLEVL-AEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 61.7 bits (150), Expect = 4e-11
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 6/118 (5%)

Query: 311 NMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKR 370
               ++ L L            I+ L+       L +L L +  +  S+ N      LK+
Sbjct: 22  TPAAVRELVLD---NCKSNDGKIEGLTAEFVN--LEFLSLINVGLI-SVSNLPKLPKLKK 75

Query: 371 LSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
           L ++ NR+ G ++    +L  L  L L  N L+ + +   L  L  L  L L +  +T
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 7e-07
 Identities = 32/133 (24%), Positives = 46/133 (34%), Gaps = 9/133 (6%)

Query: 87  KLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLS 146
           +L L   +        G I        +L +L L        S+   +  L KL  L LS
Sbjct: 28  ELVLDNCK-----SNDGKIEGLTAEFVNLEFLSLINVGLI--SV-SNLPKLPKLKKLELS 79

Query: 147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSN-W 205
                G + +    L  L  L++  N L     LE L  L  L  LDL    ++  ++  
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139

Query: 206 MQVLSKLDSLKAL 218
             V   L  L  L
Sbjct: 140 ESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 9/114 (7%)

Query: 265 SNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNT 324
           + + EL+        G I        +L  L L +     +  +L  +  LK L LS N 
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR 82

Query: 325 LRGDLSEIIQNLSDGCTKTSLAWLFLDSNEIT--GSLPNFGGFSSLKRLSIANN 376
               +   +  L++     +L  L L  N++    +L        LK L + N 
Sbjct: 83  ----IFGGLDMLAEKL--PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSN---TEFAGPIPLQLGNLSRLQVLD 168
              +  L L     +   I         L +L L N      +      L  L +L+ L+
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-----LPKLPKLKKLE 77

Query: 169 IGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISC 223
           +  N +  G ++     L +L +L+LS + L   S  ++ L KL+ LK+L L +C
Sbjct: 78  LSENRIFGGLDML-AEKLPNLTHLNLSGNKLKDIST-LEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 538 FLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSF-- 595
           FL+L       S+S L  +   KL  ++LS N + G L     +  +L  LNL+ N    
Sbjct: 53  FLSLINVGLI-SVSNLPKLP--KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD 109

Query: 596 FGKIPDSIGFLKNLQSLSLYNNRLT 620
              + + +  L+ L+SL L+N  +T
Sbjct: 110 ISTL-EPLKKLECLKSLDLFNCEVT 133

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 44/203 (21%), Positives = 64/203 (31%), Gaps = 69/203 (33%)

Query: 226 PPTIPSS--DLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIP 283
           P  IP    +L LN+           N  T      +F     L ++ N  +N++   I 
Sbjct: 27  PEHIPQYTAELRLNN-----------NEFTVLEATGIFKKLPQLRKI-NFSNNKIT-DIE 73

Query: 284 E-AFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTK 342
           E AF     +N + L SN+   +   +      K L                        
Sbjct: 74  EGAFEGASGVNEILLTSNRLENVQHKM-----FKGL------------------------ 104

Query: 343 TSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
            SL  L L SN IT  + N   F  L                       +  L L++N +
Sbjct: 105 ESLKTLMLRSNRIT-CVGN-DSFIGLS---------------------SVRLLSLYDNQI 141

Query: 403 RGVISEAFLSNLSNLTILYLADN 425
             V   AF   L +L+ L L  N
Sbjct: 142 TTVAPGAF-DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 11/135 (8%)

Query: 588 LNLANNSFFGKIPDSIGF--LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSG 645
           L L NN F   +  +  F  L  L+ ++  NN++T      F   S +  + L  N L  
Sbjct: 37  LRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE- 94

Query: 646 EIPTWIGEGLVNLVVLSLKSNKFNGSIPLQL-CHLANVQILDLSSNNISGIIPKCFNNFT 704
            +   + +GL +L  L L+SN+    +       L++V++L L  N I+ + P  F+   
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153

Query: 705 AMTHEKGSNLTLISN 719
           +++      L L++N
Sbjct: 154 SLST-----LNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 25/161 (15%), Positives = 48/161 (29%), Gaps = 34/161 (21%)

Query: 165 QVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCD 224
             L +  N     E       L  L  ++ S + ++              +  + L    
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG--AFEGASGVNEILL---- 88

Query: 225 LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE 284
                                    N L  ++   +F    +L  L  L SN++   +  
Sbjct: 89  -----------------------TSNRLE-NVQHKMFKGLESLKTL-MLRSNRIT-CVGN 122

Query: 285 -AFGHMPSLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYN 323
            +F  + S+  L L  NQ   +   +   + +L +L L  N
Sbjct: 123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 28/164 (17%)

Query: 529 IPQ-LPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAI 587
           IP+ +P   + L L+ N+F+   +        +L  I+ SNN ++  + +    F+  + 
Sbjct: 26  IPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEE--GAFEGAS- 81

Query: 588 LNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEI 647
                                +  + L +NRL       F     L  + L  N ++  +
Sbjct: 82  --------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CV 120

Query: 648 PTWIGEGLVNLVVLSLKSNKFNGSIPLQ-LCHLANVQILDLSSN 690
                 GL ++ +LSL  N+   ++       L ++  L+L +N
Sbjct: 121 GNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 44/233 (18%), Positives = 75/233 (32%), Gaps = 79/233 (33%)

Query: 71  CGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSI 130
           C    V+CSN+           L   P             I Q+   L L+ N F+    
Sbjct: 11  CEGTTVDCSNQK----------LNKIPEH-----------IPQYTAELRLNNNEFTVLEA 49

Query: 131 PEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLI 190
                 L +L  +  SN              +++  ++ G                S + 
Sbjct: 50  TGIFKKLPQLRKINFSN--------------NKITDIEEGA-----------FEGASGVN 84

Query: 191 YLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGN 250
            + L+ + L    +  ++   L+SLK L L                             N
Sbjct: 85  EILLTSNRLENVQH--KMFKGLESLKTLML---------------------------RSN 115

Query: 251 NLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE-AFGHMPSLNTLFLASNQF 302
            +T  +    F   S++  L +L  NQ+  ++   AF  + SL+TL L +N F
Sbjct: 116 RIT-CVGNDSFIGLSSVRLL-SLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.9 bits (150), Expect = 6e-10
 Identities = 55/392 (14%), Positives = 126/392 (32%), Gaps = 58/392 (14%)

Query: 115 LTYLDLSG-NNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSR----LQVLDI 169
           L  L L   + F+   +   +    K+  L +  + F+      L  L++    L+VL+ 
Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNF 199

Query: 170 GFNSL--ISGENLEWL-SHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLP 226
                  IS ++LE +  +  SL+ + +    + +   + +  + L+      L      
Sbjct: 200 YMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGM 259

Query: 227 PTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAF 286
           P     + Y+N     ++  +  + +  +  P LF  ++ + +L  L +           
Sbjct: 260 P-----EKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314

Query: 287 GHMPSLNTLFLASNQFREIPKSLGNMC-NLKSLTLSYNTLRGDLSEIIQNLSD------- 338
              P+L  L   +       + L   C  LK L +        + +    +S        
Sbjct: 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374

Query: 339 -GCTKTSLAWLFLDSNEITGS-----LPNFGGFSSLKRLSIAN--NRLNGTINKSVGQLV 390
            GC +  L ++ +  ++IT                 + + +       +  ++  V  L+
Sbjct: 375 QGCQE--LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432

Query: 391 ----KLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNL 446
               KL     +               L++L + Y+   S  +              + L
Sbjct: 433 IGCKKLRRFAFYLRQ----------GGLTDLGLSYIGQYSPNVR------------WMLL 470

Query: 447 GSCKIGPR-FPKWLRNQNQILSLDISNSGISD 477
           G          ++ R    +  L++     S+
Sbjct: 471 GYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 74/490 (15%), Positives = 148/490 (30%), Gaps = 69/490 (14%)

Query: 233 DLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVEL--INLGSNQL--QGSIPEAFGH 288
            L L       +  ++  N    + PW+  +S+NL +L  ++     +        A   
Sbjct: 77  SLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKAR 136

Query: 289 MPSLNTLFLAS-NQFREI-PKSLGNMC-NLKSLTLSYNTLRGDLSEIIQNLSDGCTK-TS 344
              L TL L   + F      S+   C  +K+L +  ++      + +  L+   T    
Sbjct: 137 ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEV 196

Query: 345 LAWLFLDSNEIT-GSLPNFG-GFSSLKRLSIANNRL--NGTINKSVGQLVKLESLFLHN- 399
           L +   +  +I+   L        SL  + + +  +       K+   L +     L+  
Sbjct: 197 LNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNED 256

Query: 400 -NSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSC-KIGPRFPK 457
                  ++  F   L  L + Y+  N + + F        Q+ +++L            
Sbjct: 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF----AAQIRKLDLLYALLETEDHCT 312

Query: 458 WLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPG 517
            ++    +  L+  N  I D                 L+          L          
Sbjct: 313 LIQKCPNLEVLETRNV-IGDR------------GLEVLAQY-----CKQLKR-------- 346

Query: 518 IDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGR--- 574
           + I     E  +       S   L       +++  C     +L+Y+ +  + ++     
Sbjct: 347 LRIERGADEQGMEDEEGLVSQRGLI------ALAQGC----QELEYMAVYVSDITNESLE 396

Query: 575 -LPDCWSQFDSLAILNLANNSFFGKIPDSIGF------LKNLQSLSLYNN--RLTGE-LP 624
            +           ++ L        +P   G        K L+  + Y     LT   L 
Sbjct: 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456

Query: 625 SFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKF-NGSIPLQLCHLANVQ 683
                   +  M LG  G S E       G  NL  L ++   F   +I   +  L +++
Sbjct: 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516

Query: 684 ILDLSSNNIS 693
            L +     S
Sbjct: 517 YLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 36/250 (14%), Positives = 80/250 (32%), Gaps = 18/250 (7%)

Query: 184 SHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLY--LNSSTS 241
           ++L  L  +      +S         ++ D L+ L L  C       +  L   +     
Sbjct: 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG---FTTDGLLSIVTHCRK 165

Query: 242 LEVIVILGNNLTDSIYPWLFNVSSNLVEL--INLGSNQLQG----SIPEAFGHMPSLNTL 295
           ++ +++  ++ ++    WL  ++ +   L  +N    +        +     +  SL ++
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225

Query: 296 FLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEI 355
            +   +  E+        NL+            + E   NL        L   ++  NE+
Sbjct: 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM 285

Query: 356 TGSLPNFGGFSSLKRLSIANNRLNG-TINKSVGQLVKLESLFLHNN-SLRGVISEAFLSN 413
               P     + +++L +    L        + +   LE L   N    RG+  E     
Sbjct: 286 PILFPF---AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGL--EVLAQY 340

Query: 414 LSNLTILYLA 423
              L  L + 
Sbjct: 341 CKQLKRLRIE 350

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 64/361 (17%), Positives = 126/361 (34%), Gaps = 58/361 (16%)

Query: 105 ISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSL----SKLSYLGLSNTEF----AGPIPL 156
           +     I   +T LDLS NN    S  E I +     + ++ L LS        +  +  
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 157 QL-GNLSRLQVLDIGFNSLISGENLEWLSHL-----SSLIYLDLSFSNLSKF--SNWMQV 208
            L    + +  L++  N  +S ++ + L         ++  LDL +++ S    S + Q 
Sbjct: 74  ILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132

Query: 209 LSKLD-SLKALYLISCDLPPT--IPSSDLYLNSSTSLEVIVILGNNLTDS----IYPWLF 261
            S L  S+ +L L   DL          +      ++  + + GNNL       +  +L 
Sbjct: 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA 192

Query: 262 NVSSNLVELINLGSNQLQGS----IPEAFGHMP-SLNTLFLASNQF-----REIPKSLGN 311
           ++ +++  L +L +N L       +   F  +P  + +L L  N         +     +
Sbjct: 193 SIPASVTSL-DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 312 MCNLKSLTLSYNTLRGDLSEIIQNLSDG-CTKTSLAWLFLDSNEITGSLPNFGGFSSLKR 370
           + +L+++ L Y+ ++    E  + L         +  +  +  EI          S    
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI--------HPSHSIP 303

Query: 371 LSIANNRLNGTINKSVGQLVKLESLFLHNNSL----RGVISEAFLSNLSNLTILYLADNS 426
           +S     L+G          K +   L N  L    +   +   L+    L         
Sbjct: 304 ISNLIRELSG----------KADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

Query: 427 L 427
           L
Sbjct: 354 L 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 47/341 (13%), Positives = 103/341 (30%), Gaps = 61/341 (17%)

Query: 366 SSLKRLSIANNRLNGTINKSVGQLVK-----LESLFLHNNSL--RGV--ISEAFLSNLSN 416
             +  L ++ N L       + Q        + SL L  NSL  +    + +   +  +N
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 417 LTILYLADNSLTLE--------FSHDWIPPFQLSQVNLGSCKIGPR----FPKWLRNQNQ 464
           +T L L+ N L+ +         +     PF ++ ++LG      +    F +   N   
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAA---IPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 465 IL-SLDISNSGISDT----VPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGID 519
            + SL++  + +       +         N++  NL  N +                   
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA-----------------S 181

Query: 520 ISSNQFEGPIPQLPLNASFLNLSKNKFSGS-ISFLCSITGH---KLDYIDLSNNLLSG-- 573
            +  +    +  +P + + L+LS N       + L  I       +  ++L  N L G  
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241

Query: 574 --RLPDCWSQFDSLAILNLANNSFFGKIPDSIGFL-------KNLQSLSLYNNRLTGELP 624
              L         L  + L  +       +    L       + +  +      +     
Sbjct: 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301

Query: 625 SFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKS 665
              +N  +          L  +   +  +   N+  L++  
Sbjct: 302 IPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPD 342

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 50/321 (15%), Positives = 97/321 (30%), Gaps = 75/321 (23%)

Query: 409 AFLSNLSNLTILYLADNSLTLE--------FSHDWIPPFQLSQVNLGSCKIGPR----FP 456
            F S    +T L L+ N+L           F++    P  ++ +NL    +G +      
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFAN---TPASVTSLNLSGNSLGFKNSDELV 72

Query: 457 KWLRNQNQIL-SLDISNSGISDT----VPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRF 511
           + L      + SL++S + +S      +        + ++  +L  N    K        
Sbjct: 73  QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK-------- 124

Query: 512 HPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSG-SISFLCSITGH---KLDYIDLS 567
                        F      +    + LNL  N     S   L  I       ++ ++L 
Sbjct: 125 -----SSSEFKQAFSNLPASI----TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175

Query: 568 NNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGE----- 622
            N L+ +  +C      LA +                   ++ SL L  N L  +     
Sbjct: 176 GNNLASK--NCAELAKFLASIP-----------------ASVTSLDLSANLLGLKSYAEL 216

Query: 623 LPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLV---NLVVLSLKSNKFNGSIPLQLCHL 679
              F +  + +  ++L  N L G     +        +L  + L  +        Q   L
Sbjct: 217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276

Query: 680 A-------NVQILDLSSNNIS 693
                    + ++D +   I 
Sbjct: 277 GAAFPNIQKIILVDKNGKEIH 297

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 16/136 (11%)

Query: 295 LFLASNQFREIP-KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGC--TKTSLAWLFLD 351
           L+L  NQ  ++      ++ NLK L L  N L          L  G   + T L  L L 
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQL--------GALPVGVFDSLTQLTVLDLG 96

Query: 352 SNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEA 409
           +N++T  LP+  F     LK L +  N+L   + + + +L  L  L L  N L+ +   A
Sbjct: 97  TNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154

Query: 410 FLSNLSNLTILYLADN 425
           F   LS+LT  YL  N
Sbjct: 155 F-DRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 23/143 (16%)

Query: 226 PPTIPSS----DLYLNSSTSLEVIVI----------LGNNLTDSIYPWLFNVSSNLVELI 271
           P  IP++     L+ N  T LE  V           LG+N   ++   +F+  + L  L 
Sbjct: 35  PAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL- 93

Query: 272 NLGSNQLQGSIPE-AFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLS 330
           +LG+NQL   +P   F  +  L  LF+  N+  E+P+ +  + +L  L L  N L+    
Sbjct: 94  DLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152

Query: 331 EIIQNLSDGCTKTSLAWLFLDSN 353
                L      +SL   +L  N
Sbjct: 153 GAFDRL------SSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Query: 587 ILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGE 646
           IL L +N      P     L NL+ L L +N+L       F + +QLT++DLG N L+  
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-V 102

Query: 647 IPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAM 706
           +P+ + + LV+L  L +  NK    +P  +  L ++  L L  N +  I    F+  +++
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 707 THEKGSNLTLISN 719
           TH       L  N
Sbjct: 162 TH-----AYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 12/125 (9%)

Query: 610 QSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFN 669
           Q L L++N++T   P  F +   L  + LG N L   +P  + + L  L VL L +N+  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 670 GSIPLQLC-HLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSL---A 725
             +P  +   L +++ L +  N ++  +P+     T +TH     L L  N   S+   A
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTH-----LALDQNQLKSIPHGA 154

Query: 726 YDSLK 730
           +D L 
Sbjct: 155 FDRLS 159

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 348 LFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSV-GQLVKLESLFLHNNSLRGV 405
           L+L  N+IT   P  F    +LK L + +N+L   +   V   L +L  L L  N L  +
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 406 ISEAFLSNLSNLTILYLADNSLT 428
            S  F   L +L  L++  N LT
Sbjct: 104 PSAVF-DRLVHLKELFMCCNKLT 125

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 57.2 bits (138), Expect = 8e-09
 Identities = 56/280 (20%), Positives = 94/280 (33%), Gaps = 37/280 (13%)

Query: 68  RDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLI----LQHLTYLDLSGN 123
            D   W+ ++ + +  H       + Q   +     +     L        + ++DLS +
Sbjct: 44  SDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS 103

Query: 124 NFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWL 183
               S++   +   SKL  L L     + PI   L   S L  L++   S  S   L+ L
Sbjct: 104 VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 163

Query: 184 -SHLSSLIYLDLSF-SNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTS 241
            S  S L  L+LS+  + ++    + V    +++  L L                     
Sbjct: 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY------------------ 205

Query: 242 LEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQ 301
                    NL  S    L     NLV L    S  L+    + F  +  L  L L+   
Sbjct: 206 -------RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC- 257

Query: 302 FREIP----KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLS 337
             +I       LG +  LK+L +      G L  + + L 
Sbjct: 258 -YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALP 296

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 23/140 (16%)

Query: 295 LFLASNQFREIP-KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTK--TSLAWLFLD 351
           L L +N  + +P      + +L  L L  N L        Q+L +G     TSL +L L 
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKL--------QSLPNGVFNKLTSLTYLNLS 84

Query: 352 SNEITGSLPN--FGGFSSLKRLSIANNRL----NGTINKSVGQLVKLESLFLHNNSLRGV 405
           +N++  SLPN  F   + LK L++  N+L    +G  +K    L +L+ L L+ N L+ V
Sbjct: 85  TNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDK----LTQLKDLRLYQNQLKSV 139

Query: 406 ISEAFLSNLSNLTILYLADN 425
               F   L++L  ++L DN
Sbjct: 140 PDGVF-DRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 8/133 (6%)

Query: 588 LNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEI 647
           L+L  NS           L +L  L L  N+L       F   + LT ++L  N L   +
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91

Query: 648 PTWIGEGLVNLVVLSLKSNKFNGSIPLQLC-HLANVQILDLSSNNISGIIPKCFNNFTAM 706
           P  + + L  L  L+L +N+   S+P  +   L  ++ L L  N +  +    F+  T++
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150

Query: 707 THEKGSNLTLISN 719
            +     + L  N
Sbjct: 151 QY-----IWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 11/125 (8%)

Query: 610 QSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFN 669
             L L  N L       F   + LT + LG N L   +P  +   L +L  L+L +N+  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 670 GSIPLQLC-HLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSL---A 725
            S+P  +   L  ++ L L++N +  +    F+  T +       L L  N   S+    
Sbjct: 90  -SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD-----LRLYQNQLKSVPDGV 143

Query: 726 YDSLK 730
           +D L 
Sbjct: 144 FDRLT 148

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 562 DYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSI-GFLKNLQSLSLYNNRLT 620
            Y+DL  N L       + +  SL  L L  N     +P+ +   L +L  L+L  N+L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 621 GELPS-FFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIP 673
             LP+  F   +QL  + L  N L   +P  + + L  L  L L  N+   S+P
Sbjct: 90  -SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVP 140

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 44/354 (12%), Positives = 93/354 (26%), Gaps = 81/354 (22%)

Query: 100 CLKGTISSSLL--ILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQ 157
                 +      +L  L  L+L+G   +           + ++ +  S           
Sbjct: 57  FHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKC-------TVVAAVLGSGRH-------- 101

Query: 158 LGNLSRLQVLDIGFNSLISGENLEWL-SHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLK 216
                 L  +++     +    L  L         L L  ++L             ++ K
Sbjct: 102 -----ALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGP-----------EACK 144

Query: 217 ALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFN---VSSNLVELINL 273
            L              DL L+    +  + +  N LT +    L      ++++  L +L
Sbjct: 145 DL-------------RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL-SL 190

Query: 274 GSNQLQ----GSIPEAFGHMPSLNTLFLASNQF-----REIPKSLGNMCNLKSLTLSYNT 324
               L       +         L  L +A N         + ++     +L+ L L +N 
Sbjct: 191 LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250

Query: 325 LRGD----LSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNG 380
           L  +    L ++      G           +   ++              LS     LN 
Sbjct: 251 LSSEGRQVLRDLGGAAEGGARVVV---SLTEGTAVSE--------YWSVILSEVQRNLNS 299

Query: 381 TINKSVGQLVKLESLFLHNNSLR----GVISEAFLSNLSNLTILYLADNSLTLE 430
                V + ++L    L ++          ++        +  L     S    
Sbjct: 300 WDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVE-GEVRALLEQLGSSGSP 352

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 49/353 (13%), Positives = 99/353 (28%), Gaps = 73/353 (20%)

Query: 156 LQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSL 215
           L    L   ++LD  F              LSSL  L+L+   ++               
Sbjct: 41  LGRQVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMT-----------PVKC 89

Query: 216 KALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGS 275
             +             + +  +   +L+ + +    L  +    L  V     +L  L  
Sbjct: 90  TVV-------------AAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL-GLQL 135

Query: 276 NQLQGSIPEAFGHM-----PSLNTLFLASNQFRE-----IPKSLGNMCNLKSLTLSYNTL 325
           N L     +    +       + TL L++N         + + L    ++  L+L +  L
Sbjct: 136 NSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195

Query: 326 RGDLSEIIQNLSDG-CTKTSLAWLFLDSNEITGS---------LPNFGGFSSLKRLSIAN 375
            GD    ++ L+        L  L +  N    +           +     SL+ L +  
Sbjct: 196 -GDEG--LELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREH----PSLELLHLYF 248

Query: 376 NRLNGT-------INKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
           N L+         +  +     ++        ++    S        NL     A     
Sbjct: 249 NELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRH 308

Query: 429 LEFSHDWIPPFQLSQVNLGSCKIGP----RFPKWLRNQNQILSLDISNSGISD 477
           L          +L   +L   +       R  + LR + ++ +L         
Sbjct: 309 L----------ELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGS 351

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 36/226 (15%), Positives = 76/226 (33%), Gaps = 30/226 (13%)

Query: 276 NQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGD----LSE 331
            +L     +       L+       +F+    S   + +L+ L L+   +       ++ 
Sbjct: 36  KKLGKLGRQVLPPSELLD-HLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAA 94

Query: 332 IIQNLSDGCTKTSLAWLFLDSNEIT--GSLPNFGGFSSLKRLSIANNRLNGTINKSVGQL 389
           ++ +      + +L  + L S ++   G       F   ++L +  N L     K +  L
Sbjct: 95  VLGS-----GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149

Query: 390 VK-----LESLFLHNNSLRGV----ISEAFLSNLSNLTILYLADNSLTLE----FSHDWI 436
           +      + +L L NN L       + E    N +++T L L    L  E     +    
Sbjct: 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN-TSVTHLSLLHTGLGDEGLELLAAQLD 208

Query: 437 PPFQLSQVNLGSCKIGPR----FPKWLRNQNQILSLDISNSGISDT 478
              QL ++N+     G        +  R    +  L +  + +S  
Sbjct: 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 12/89 (13%)

Query: 343 TSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRL----NGTINKSVGQLVKLESLF 396
             L  L L  N++T  +    F G S ++ L +  N++    N         L +L++L 
Sbjct: 54  PHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKMFLG----LHQLKTLN 108

Query: 397 LHNNSLRGVISEAFLSNLSNLTILYLADN 425
           L++N +  V+  +F  +L++LT L LA N
Sbjct: 109 LYDNQISCVMPGSF-EHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 37/132 (28%), Positives = 50/132 (37%), Gaps = 23/132 (17%)

Query: 226 PPTIPSS--DLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIP 283
           P  IP    +L LN            N L       LF    +LV+L  L  NQL   I 
Sbjct: 24  PRDIPLHTTELLLND-----------NELGRISSDGLFGRLPHLVKL-ELKRNQLT-GIE 70

Query: 284 E-AFGHMPSLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCT 341
             AF     +  L L  N+ +EI   +   +  LK+L L  N +   +    ++L     
Sbjct: 71  PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL----- 125

Query: 342 KTSLAWLFLDSN 353
             SL  L L SN
Sbjct: 126 -NSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 34/136 (25%), Positives = 50/136 (36%), Gaps = 35/136 (25%)

Query: 587 ILNLANNSFFGKIPDSIGF--LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLS 644
            L L +N   G+I     F  L +L  L L  N+LT                        
Sbjct: 33  ELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLT------------------------ 67

Query: 645 GEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLC-HLANVQILDLSSNNISGIIPKCFNNF 703
             I     EG  ++  L L  NK    I  ++   L  ++ L+L  N IS ++P  F + 
Sbjct: 68  -GIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 704 TAMTHEKGSNLTLISN 719
            ++T      L L SN
Sbjct: 126 NSLTS-----LNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 29/139 (20%), Positives = 44/139 (31%), Gaps = 33/139 (23%)

Query: 165 QVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCD 224
             L +  N L    +      L  L+ L+L  + L+              ++ L L    
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN--AFEGASHIQELQL---- 85

Query: 225 LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE 284
                                    N +   I   +F     L  L NL  NQ+   +  
Sbjct: 86  -----------------------GENKIK-EISNKMFLGLHQLKTL-NLYDNQIS-CVMP 119

Query: 285 -AFGHMPSLNTLFLASNQF 302
            +F H+ SL +L LASN F
Sbjct: 120 GSFEHLNSLTSLNLASNPF 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 38/133 (28%), Positives = 50/133 (37%), Gaps = 34/133 (25%)

Query: 295 LFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGC--TKTSLAWLFLDS 352
           L+L  NQF  +PK L N  +L  + LS N         I  LS+      T L  L L  
Sbjct: 36  LYLDGNQFTLVPKELSNYKHLTLIDLSNNR--------ISTLSNQSFSNMTQLLTLILSY 87

Query: 353 NEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLS 412
           N +   +P    F  LK                      L  L LH N +  V   AF +
Sbjct: 88  NRLR-CIPP-RTFDGLK---------------------SLRLLSLHGNDISVVPEGAF-N 123

Query: 413 NLSNLTILYLADN 425
           +LS L+ L +  N
Sbjct: 124 DLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 348 LFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVIS 407
           L+LD N+ T        +  L  + ++NNR++   N+S   + +L +L L  N LR +  
Sbjct: 36  LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95

Query: 408 EAFLSNLSNLTILYLADNSL 427
             F   L +L +L L  N +
Sbjct: 96  RTF-DGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 23/132 (17%)

Query: 225 LPPTIPSS--DLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSI 282
           LP  IP    +LYL+           GN  T    P   +   +L  + +L +N++    
Sbjct: 25  LPKGIPRDVTELYLD-----------GNQFTLV--PKELSNYKHLTLI-DLSNNRISTLS 70

Query: 283 PEAFGHMPSLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCT 341
            ++F +M  L TL L+ N+ R IP      + +L+ L+L  N +         +L     
Sbjct: 71  NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL----- 125

Query: 342 KTSLAWLFLDSN 353
            ++L+ L + +N
Sbjct: 126 -SALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 587 ILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGE 646
            L L  N F   +P  +   K+L  + L NNR++      F+N +QL  + L  N L   
Sbjct: 35  ELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-C 92

Query: 647 IPTWIGEGLVNLVVLSLKSNKFNGSIP 673
           IP    +GL +L +LSL  N  +  +P
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDIS-VVP 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 325 LRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTI 382
            R    + + +L       +L  L++++ +    L      G   L+ L+I  + L    
Sbjct: 16  TRDGALDSLHHLPGA---ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72

Query: 383 NKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLS 442
             +     +L  L L  N+L  +  +       +L  L L+ N L    +  W+  ++  
Sbjct: 73  PDAFHFTPRLSRLNLSFNALESLSWKTVQG--LSLQELVLSGNPLHCSCALRWLQRWEEE 130

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 1e-06
 Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 10/113 (8%)

Query: 245 IVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE 304
           +    +   DS        + NL EL       LQ         +  L  L +  +  R 
Sbjct: 13  LRCTRDGALDS--LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 305 IPK-SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEIT 356
           +   +      L  L LS+N L     + +Q L       SL  L L  N + 
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-------SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 1e-06
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 1/91 (1%)

Query: 236 LNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTL 295
           L  + +L  + I        +          L  L  +  + L+   P+AF   P L+ L
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNL-TIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 296 FLASNQFREIPKSLGNMCNLKSLTLSYNTLR 326
            L+ N    +        +L+ L LS N L 
Sbjct: 86  NLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 4e-05
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 599 IPDSIGFLKNLQSLSLYNNRLTGELPSF-FTNGSQLTLMDLGKNGLSGEIPTWIGEGLVN 657
               +   +NL  L + N +    L         +L  + + K+GL   +          
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 658 LVVLSLKSNKFNGSIPLQLCHLANVQILDLSSN 690
           L  L+L  N    S+  +     ++Q L LS N
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 7/102 (6%)

Query: 546 FSGSISFLCSITG-HKLDYIDLSNNLLSGRLPDCWSQFD---SLAILNLANNSFFGKIPD 601
             G++  L  + G   L  + + N      L            L  L +  +      PD
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLE--LRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 602 SIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGL 643
           +  F   L  L+L  N L           S L  + L  N L
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 21/117 (17%)

Query: 70  CCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSS 129
             G  G+ C+          L  L   P               ++LT L +         
Sbjct: 7   PHGSSGLRCTRD------GALDSLHHLPG-------------AENLTELYIENQQHLQHL 47

Query: 130 IPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSL--ISGENLEWLS 184
               +  L +L  L +  +      P       RL  L++ FN+L  +S + ++ LS
Sbjct: 48  ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 11/90 (12%), Positives = 24/90 (26%), Gaps = 2/90 (2%)

Query: 616 NNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQ 675
                 +          LT + +        +      GL  L  L++  +     +   
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 676 -LCHLANVQILDLSSNNISGIIPKCFNNFT 704
                  +  L+LS N +  +  K     +
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 6e-04
 Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 6/100 (6%)

Query: 154 IPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLD 213
               L     L  L I     +    L  L  L  L  L +  S L   +          
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP--DAFHFTP 80

Query: 214 SLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLT 253
            L  L L    L  ++    +      SL+ +V+ GN L 
Sbjct: 81  RLSRLNLSFNAL-ESLSWKTV---QGLSLQELVLSGNPLH 116

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 12/89 (13%)

Query: 343 TSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRL----NGTINKSVGQLVKLESLF 396
           T+   L+L  N+IT  L    F   + L RL + NN+L     G  +K    L +L  L 
Sbjct: 30  TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK----LTQLTQLS 84

Query: 397 LHNNSLRGVISEAFLSNLSNLTILYLADN 425
           L++N L+ +   AF  NL +LT ++L +N
Sbjct: 85  LNDNQLKSIPRGAF-DNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 23/100 (23%)

Query: 225 LPPTIPSS----DLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQG 280
           +P  IP++     LY N  T LE              P +F+  + L  L +L +NQL  
Sbjct: 24  VPTGIPTTTQVLYLYDNQITKLE--------------PGVFDRLTQLTRL-DLDNNQLT- 67

Query: 281 SIPE-AFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLT 319
            +P   F  +  L  L L  NQ + IP+  G   NLKSLT
Sbjct: 68  VLPAGVFDKLTQLTQLSLNDNQLKSIPR--GAFDNLKSLT 105

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 22/118 (18%)

Query: 316 KSLTLSYNTLRGDLSEIIQNLSDGC--TKTSLAWLFLDSNEITGSLPN--FGGFSSLKRL 371
             L L  N         +Q+L  G     T L  L L  N+I  SLP+  F   + L  L
Sbjct: 31  TRLELESNK--------LQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTIL 81

Query: 372 SIANNRL----NGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
            +  N+L    NG  +K    L +L+ L L  N L+ V    F   L++L  ++L  N
Sbjct: 82  YLHENKLQSLPNGVFDK----LTQLKELALDTNQLKSVPDGIF-DRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 28/134 (20%)

Query: 226 PPTIPSS----DLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGS 281
           P  IPSS    +L  N   SL                 +F+  + L +L +L  NQ+Q S
Sbjct: 23  PTGIPSSATRLELESNKLQSLP--------------HGVFDKLTQLTKL-SLSQNQIQ-S 66

Query: 282 IPEA-FGHMPSLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYNTLRGDLSEIIQNLSDG 339
           +P+  F  +  L  L+L  N+ + +P  +   +  LK L L  N L+     I   L   
Sbjct: 67  LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRL--- 123

Query: 340 CTKTSLAWLFLDSN 353
              TSL  ++L +N
Sbjct: 124 ---TSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 610 QSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFN 669
             L L +N+L       F   +QLT + L +N +   +P  + + L  L +L L  NK  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89

Query: 670 GSIPLQLC-HLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISN 719
            S+P  +   L  ++ L L +N +  +    F+  T++       + L +N
Sbjct: 90  -SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK-----IWLHTN 134

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 12/89 (13%)

Query: 343 TSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRL----NGTINKSVGQLVKLESLF 396
           T    L+L++N+IT  L    F    +L++L   +N+L     G  +K    L +L  L 
Sbjct: 33  TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK----LTQLTQLD 87

Query: 397 LHNNSLRGVISEAFLSNLSNLTILYLADN 425
           L++N L+ +   AF  NL +LT +YL +N
Sbjct: 88  LNDNHLKSIPRGAF-DNLKSLTHIYLYNN 115

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.5 bits (118), Expect = 5e-06
 Identities = 48/263 (18%), Positives = 89/263 (33%), Gaps = 17/263 (6%)

Query: 89  DLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNT 148
           D +++       +   I +       L  + L     +   +     S      L LS+ 
Sbjct: 81  DFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140

Query: 149 EFAGPIPLQ--LGNLSRLQVLDIGFNSLISGENLEWLSHLS----SLIYLDLS-FSNLSK 201
           E      L         L+ LD+  +  +   +  WLSH      SL+ L++S  ++   
Sbjct: 141 EGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVS 199

Query: 202 FSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILG--NNLTDSIYPW 259
           FS   +++++  +LK+L L        +      L  +  LE +   G    +   +Y  
Sbjct: 200 FSALERLVTRCPNLKSLKLNRA---VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG 256

Query: 260 LFNVSSNLVELINLG--SNQLQGSIPEAFGHMPSLNTLFLASNQF--REIPKSLGNMCNL 315
           L    S   EL  L    + +   +P  +     L TL L+       ++ K L     L
Sbjct: 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKL 316

Query: 316 KSLTLSYNTLRGDLSEIIQNLSD 338
           + L +        L  +     D
Sbjct: 317 QRLWVLDYIEDAGLEVLASTCKD 339

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 49/343 (14%), Positives = 110/343 (32%), Gaps = 40/343 (11%)

Query: 90  LHILQVFPSPCLKGTISS---SLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLS 146
            H+         + ++S    S   ++      +   N    S    I    K+  + L 
Sbjct: 15  EHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELK 74

Query: 147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
                        + +   ++  G+   +        S  + L  + L    ++     +
Sbjct: 75  GK----------PHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDC--L 122

Query: 207 QVLSK-LDSLKALYLISCDLPPTIPSSDLY--LNSSTSLEVIVILGNNLTDSIYPWLFNV 263
           ++++K   + K L L SC+      +  L     +  +L+ + +  +++ D    WL + 
Sbjct: 123 ELIAKSFKNFKVLVLSSCE---GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179

Query: 264 SSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYN 323
                 L++L  + L   +  +     +L  L             +    NLKSL L+  
Sbjct: 180 PDTYTSLVSLNISCLASEVSFS-----ALERL-------------VTRCPNLKSLKLNRA 221

Query: 324 TLRGDLSEIIQNLSDGCT-KTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTI 382
                L+ ++Q         T      +  +  +G      G   L+ LS   + +   +
Sbjct: 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYL 281

Query: 383 NKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
                   +L +L L   +++       L     L  L++ D 
Sbjct: 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 29/231 (12%), Positives = 73/231 (31%), Gaps = 23/231 (9%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGF 171
              LT L+LS        + + +    KL  L + +      + +       L+ L +  
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347

Query: 172 --------NSLISGENLEWLS-HLSSLIYLDLSFSNLSKFSNWMQVLSK-LDSLKALYLI 221
                   N  ++ + L  +S     L  +      ++  +  +  +++   ++    L 
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA--LITIARNRPNMTRFRLC 405

Query: 222 SCDLPPTIPSSDLYLNSS--------TSLEVIVILGNNLTDSIYPWLFNVSSNLVELINL 273
             +       +   L+            L  +  L   LTD ++ ++   +  +  L   
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS-LSGLLTDKVFEYIGTYAKKMEMLSVA 464

Query: 274 GSNQLQGSIPEAFGHMPSLNTLFLASNQF--REIPKSLGNMCNLKSLTLSY 322
            +      +        SL  L +    F  + +  +   +  ++SL +S 
Sbjct: 465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.4 bits (114), Expect = 6e-06
 Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 16/160 (10%)

Query: 182 WLSHLSSLI--YLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSS--DLYLN 237
               LS ++     L+   +   +N         +LK+L +IS  LP ++        L 
Sbjct: 160 EQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLP 219

Query: 238 SSTSLEVIV----ILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGH---MP 290
           +   L + V       +   +   P         ++ + +   + Q  + E F     +P
Sbjct: 220 NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279

Query: 291 SLNTLFLASNQF-----REIPKSLGNMCNLKSLTLSYNTL 325
            L T+ +++        R +   +  + +LK + + YN L
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 3e-05
 Identities = 46/308 (14%), Positives = 98/308 (31%), Gaps = 28/308 (9%)

Query: 197 SNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSI 256
           + +  FS+  +       L A       +      +      +    +         + +
Sbjct: 38  TQVKNFSSAGEAEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLM 97

Query: 257 YPWLFNVSSNLVELINLG--------SNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKS 308
              L +     ++ I +G         + +   I E          LF     F E   S
Sbjct: 98  DKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEIS 157

Query: 309 LGNMCNLKSLTLSYNTLRGDLSEIIQNLSDG-CTKTSLAWLFLDSNEITGS-LPNFGG-- 364
                +L  +  +   L     +   NLS G   + +L  L + S  +  S + +  G  
Sbjct: 158 WIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 365 FSSLKRLSIANNRLNGTINKSVGQLV---------KLESLFLHNNSLRGVISEAFLS--N 413
             +L++L +     +   +  +              L+ L + +   + V+ E FL    
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 414 LSNLTILYLADNSLT---LEFSHDWIPPF-QLSQVNLGSCKIGPRFPKWLRNQNQILSLD 469
           L  L  + ++   LT        D +     L  +N+    +     K L+ ++  + +D
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ-KSLPMKID 336

Query: 470 ISNSGISD 477
           +S+S   D
Sbjct: 337 VSDSQEYD 344

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.2 bits (98), Expect = 2e-04
 Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 14/40 (35%)

Query: 498 NQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNAS 537
             +K KL    +    Y      S+       P L + A+
Sbjct: 20  QALK-KL---QASLKLYADD---SA-------PALAIKAT 45

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 10/117 (8%)

Query: 115 LTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEF---AGPIPL-QLGNLSR-LQVLDI 169
           +  +D + +        + +  L  +  + L    +        L QL NL + +  ++I
Sbjct: 63  IQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 170 GFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNW-MQVLSKLDSLKALYLISCDL 225
                ++ + +  L H  +L YL L  S+L         V +   SL +L  +  DL
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFL--SDLPGVKEKEKIVQAFKTSLPSLE-LKLDL 175

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	956
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.37
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.05
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.02
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.81
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.74
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.59
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.57
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.27
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.25
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.18
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.92
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.74
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.13
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.69
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.2

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.5e-89  Score=841.11  Aligned_cols=708  Identities=30%  Similarity=0.447  Sum_probs=484.3

Q ss_pred             CCCHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCCccccceeecCCCCcEEEEECCCCCCCCCCCCccc---ccccccc
Q 046848           35 RCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGT---ISSSLLI  111 (956)
Q Consensus        35 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~l~g~---l~~~l~~  111 (956)
                      .+.++|++||++||+++.||. .+++|+   .+++||.|+||+|+  +|+|+.++|++      ..+.|.   +++++.+
T Consensus         8 ~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~------~~l~g~~~~l~~~l~~   75 (768)
T 3rgz_A            8 QSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSS------KPLNVGFSAVSSSLLS   75 (768)
T ss_dssp             CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTT------SCCCEEHHHHHHHTTT
T ss_pred             cCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCC------CCcCCccCccChhHhc
Confidence            356889999999999999988 899997   46799999999998  69999999998      678888   8999999


Q ss_pred             ccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCc--cCCCCCCCcEEECCCCCCCCCCCccccCCCCCC
Q 046848          112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPL--QLGNLSRLQVLDIGFNSLISGENLEWLSHLSSL  189 (956)
Q Consensus       112 l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L  189 (956)
                      +++|+.++++.+.+.  .+|+.++++++|++|+|++|.++|.+|.  .++++++|++|++++|.+........+.++++|
T Consensus        76 L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  153 (768)
T 3rgz_A           76 LTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL  153 (768)
T ss_dssp             CTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred             cCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence            999999999999876  4778999999999999999999999998  999999999999999987433333345899999


Q ss_pred             cEEecccccCCCCchh-HHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhccccc
Q 046848          190 IYLDLSFSNLSKFSNW-MQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLV  268 (956)
Q Consensus       190 ~~L~Ls~n~l~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~  268 (956)
                      ++|++++|.+++.... ...+.++++|++|++++|.+.+..+.     ..+++|++|++++|.+.+.+|. +.+++. | 
T Consensus       154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~-L-  225 (768)
T 3rgz_A          154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-----SRCVNLEFLDVSSNNFSTGIPF-LGDCSA-L-  225 (768)
T ss_dssp             SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-----TTCTTCCEEECCSSCCCSCCCB-CTTCCS-C-
T ss_pred             CEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-----ccCCcCCEEECcCCcCCCCCcc-cccCCC-C-
Confidence            9999999999875321 12278888999999988888776552     2336666666666666655544 444444 5 


Q ss_pred             ceEEecccccccCCCcccCCCCCCcEEECCCCcCcc-ccccccCCCCCCEEEccCCCCCCcchHHHhhc-CCCCccCCCC
Q 046848          269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE-IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNL-SDGCTKTSLA  346 (956)
Q Consensus       269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~~~~~~~L~  346 (956)
                      ++|++++|.+++.+|..+..+++|++|++++|.+++ +|..  .+++|++|++++|.+++.+|..+... +      +|+
T Consensus       226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~------~L~  297 (768)
T 3rgz_A          226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD------TLT  297 (768)
T ss_dssp             CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCT------TCS
T ss_pred             CEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcC------cCC
Confidence            555555555555555555555555555555555554 3322  45555555555555554444443332 3      455


Q ss_pred             EEEccCCcCcccCCC-CCCCCCCCEEEeeccccccccchh-hcCCCCCCEEECcCccCccccCHHhhhCCC-CCCEEEcC
Q 046848          347 WLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKS-VGQLVKLESLFLHNNSLRGVISEAFLSNLS-NLTILYLA  423 (956)
Q Consensus       347 ~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~Ls  423 (956)
                      +|++++|.+++.+|. ++.+++|++|++++|.+.+.+|.. +..+++|++|++++|++++.+|.. +..++ +|++|+++
T Consensus       298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls  376 (768)
T 3rgz_A          298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLS  376 (768)
T ss_dssp             EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEECC
T ss_pred             EEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEcc
Confidence            555555555544443 445555555555555554444433 445555555555555555444443 23333 45555555


Q ss_pred             CCcccccccCCcCC--CCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEeccccccc
Q 046848          424 DNSLTLEFSHDWIP--PFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK  501 (956)
Q Consensus       424 ~n~l~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~  501 (956)
                      +|.+++..+..+..  .++|++|++++|.+.+.+|.++..+++|++|++++|.+++.+|..+.. +++|++|++++|.++
T Consensus       377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~  455 (768)
T 3rgz_A          377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLE  455 (768)
T ss_dssp             SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCC
T ss_pred             CCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc-CCCCCEEECCCCccc
Confidence            55554444333332  344444444444444444444444444444444444444444433322 223444443333333


Q ss_pred             ccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccC
Q 046848          502 GKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQ  581 (956)
Q Consensus       502 ~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~  581 (956)
                      +.+|..                                             +...  ++|++|++++|++++.+|..+.+
T Consensus       456 ~~~p~~---------------------------------------------~~~l--~~L~~L~L~~N~l~~~~p~~l~~  488 (768)
T 3rgz_A          456 GEIPQE---------------------------------------------LMYV--KTLETLILDFNDLTGEIPSGLSN  488 (768)
T ss_dssp             SCCCGG---------------------------------------------GGGC--TTCCEEECCSSCCCSCCCGGGGG
T ss_pred             CcCCHH---------------------------------------------HcCC--CCceEEEecCCcccCcCCHHHhc
Confidence            332221                                             1111  56777777777777777777777


Q ss_pred             CCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEE
Q 046848          582 FDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVL  661 (956)
Q Consensus       582 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L  661 (956)
                      +++|++|++++|++++.+|..++.+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|.+++ ....+..+
T Consensus       489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~~~~~~~  567 (768)
T 3rgz_A          489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-KQSGKIAA  567 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG-TTTTCBCC
T ss_pred             CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh-cccchhhh
Confidence            77777777777777777777777777777777777777777777777777777777777777777777666 34444333


Q ss_pred             EccCC----------------------cccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccc
Q 046848          662 SLKSN----------------------KFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISN  719 (956)
Q Consensus       662 ~L~~N----------------------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  719 (956)
                      ++..+                      .+.+..+..+..++.++.++++.|.++|.+|..++                  
T Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~------------------  629 (768)
T 3rgz_A          568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD------------------  629 (768)
T ss_dssp             STTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS------------------
T ss_pred             hccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh------------------
Confidence            33221                      12223333333344444444444444444444444                  


Q ss_pred             ccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccc
Q 046848          720 YYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI  799 (956)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l  799 (956)
                                                       .++.|++|||++|+++|.+|.++++++.|+.|||++|+++|.+|+.+
T Consensus       630 ---------------------------------~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l  676 (768)
T 3rgz_A          630 ---------------------------------NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV  676 (768)
T ss_dssp             ---------------------------------SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             ---------------------------------ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH
Confidence                                             44455999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcCCccccccccCC-CCCCCCCCCCCCCC
Q 046848          800 GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCGLPLPNKCPDE  874 (956)
Q Consensus       800 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~~~~c~~~  874 (956)
                      +++++|++|||++|+++|.+|+.++++++|++||+++|+++|.||..+++.+|...+|.|| .|||.|+. .|...
T Consensus       677 ~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~  751 (768)
T 3rgz_A          677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPS  751 (768)
T ss_dssp             GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred             hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999 99999987 78543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6e-70  Score=667.50  Aligned_cols=657  Identities=29%  Similarity=0.391  Sum_probs=505.9

Q ss_pred             cCCCEEeCCCCCCCCCC---CCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCcc--ccCCCC
Q 046848          113 QHLTYLDLSGNNFSGSS---IPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLE--WLSHLS  187 (956)
Q Consensus       113 ~~L~~L~Ls~n~~~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~--~l~~l~  187 (956)
                      .+++.|||+++.+.+ .   +|+.+.++++|++++++.+.+. .+|..++++++|++|||++|.+ ....+.  .+++++
T Consensus        50 ~~v~~L~L~~~~l~g-~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~l~~l~  126 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNV-GFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSL-SGPVTTLTSLGSCS  126 (768)
T ss_dssp             TEEEEEECTTSCCCE-EHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEE-EEEGGGGGGGGGCT
T ss_pred             CcEEEEECCCCCcCC-ccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcC-CCcCCChHHHhCCC
Confidence            478899999998886 3   6788899999999999988775 4678899999999999999876 222233  455566


Q ss_pred             CCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchh---hHhhc
Q 046848          188 SLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPW---LFNVS  264 (956)
Q Consensus       188 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---l~~~~  264 (956)
                      +|++|++++|.+.                          +..+  ..+...+++|++|++++|.+.+..+..   +.++.
T Consensus       127 ~L~~L~Ls~n~l~--------------------------~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~  178 (768)
T 3rgz_A          127 GLKFLNVSSNTLD--------------------------FPGK--VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG  178 (768)
T ss_dssp             TCCEEECCSSEEE--------------------------CCSS--CCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred             CCCEEECcCCccC--------------------------CcCC--HHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence            6666666655544                          3333  222233367777777777777766665   45555


Q ss_pred             ccccceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCC
Q 046848          265 SNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTS  344 (956)
Q Consensus       265 ~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~  344 (956)
                      . | ++|++++|.+.+..|.  ..+++|++|++++|.+++.++.+.++++|++|++++|.+++.+|..+..++      +
T Consensus       179 ~-L-~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~------~  248 (768)
T 3rgz_A          179 E-L-KHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT------E  248 (768)
T ss_dssp             T-C-CEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCS------S
T ss_pred             C-C-CEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCC------C
Confidence            5 7 8888888888876553  788899999999999888333488899999999999999988888888887      8


Q ss_pred             CCEEEccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCC-CCCCEEECcCccCccccCHHhhhCCCCCCEEEcC
Q 046848          345 LAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQL-VKLESLFLHNNSLRGVISEAFLSNLSNLTILYLA  423 (956)
Q Consensus       345 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls  423 (956)
                      |++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|++++.+|.. ++.+++|++|+++
T Consensus       249 L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~  326 (768)
T 3rgz_A          249 LKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALS  326 (768)
T ss_dssp             CCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECC
T ss_pred             CCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECC
Confidence            999999999998877766 78889999999999988888887765 88999999999988887774 7888888888888


Q ss_pred             CCcccccccCC-cCCCCCcceEEcCCCCCCCCCchhhhccc-ceeEEEeeCCCCCCCccchhhhc-cCCcceEecccccc
Q 046848          424 DNSLTLEFSHD-WIPPFQLSQVNLGSCKIGPRFPKWLRNQN-QILSLDISNSGISDTVPNWFWNQ-TYNLSFFNLSNNQI  500 (956)
Q Consensus       424 ~n~l~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~~-~~~L~~L~Ls~n~l  500 (956)
                      +|.+++..+.. +..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+++.+|..+... .++|++|++++|++
T Consensus       327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l  406 (768)
T 3rgz_A          327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF  406 (768)
T ss_dssp             SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred             CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence            88887655443 55666666666666666666666666665 66666666666666555554432 34566666666655


Q ss_pred             cccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCcccc
Q 046848          501 KGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWS  580 (956)
Q Consensus       501 ~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~  580 (956)
                      ++.+|..+.                                             ..  ++|++|++++|++++.+|..+.
T Consensus       407 ~~~~p~~l~---------------------------------------------~l--~~L~~L~Ls~N~l~~~~p~~l~  439 (768)
T 3rgz_A          407 TGKIPPTLS---------------------------------------------NC--SELVSLHLSFNYLSGTIPSSLG  439 (768)
T ss_dssp             EEECCGGGG---------------------------------------------GC--TTCCEEECCSSEEESCCCGGGG
T ss_pred             ccccCHHHh---------------------------------------------cC--CCCCEEECcCCcccCcccHHHh
Confidence            554443321                                             11  6789999999999999999999


Q ss_pred             CCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcE
Q 046848          581 QFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVV  660 (956)
Q Consensus       581 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~  660 (956)
                      .+++|+.|++++|.+.+.+|..+..+++|++|++++|++++.+|..+.++++|++|+|++|++++.+|.++. .+++|++
T Consensus       440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~  518 (768)
T 3rgz_A          440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAI  518 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCE
T ss_pred             cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999888 6999999


Q ss_pred             EEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccccccccccccccccccee
Q 046848          661 LSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAV  740 (956)
Q Consensus       661 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  740 (956)
                      |++++|++++.+|..+..+++|+.|++++|+++|.+|..+.....+........    ..+.......... ........
T Consensus       519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~  593 (768)
T 3rgz_A          519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG----KRYVYIKNDGMKK-ECHGAGNL  593 (768)
T ss_dssp             EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS----CEEEEEECCSCCT-TCCSSEEE
T ss_pred             EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc----ccccccccccccc-cccccccc
Confidence            999999999999999999999999999999999999988877666543321110    0000000000000 00000011


Q ss_pred             EEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCc
Q 046848          741 LTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIP  820 (956)
Q Consensus       741 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  820 (956)
                      ....+........+..+..++++.|.++|.+|..+..+++|+.|||++|+++|.+|.+++++++|+.|||++|+++|.+|
T Consensus       594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  673 (768)
T 3rgz_A          594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP  673 (768)
T ss_dssp             EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence            12233333344455666788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCeEECcCCcceecCCCC-CcCCccccccccCCCCCCC
Q 046848          821 SSLSQLSRLSVMDLSYNNLSGKIPSG-TQLQSFSTSMYAGNELCGL  865 (956)
Q Consensus       821 ~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~l~~~  865 (956)
                      +.++++++|++||+++|+++|.||.. ..+..+....+.+|.+.|.
T Consensus       674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred             hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence            99999999999999999999999975 4555666667788877764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.9e-59  Score=566.42  Aligned_cols=599  Identities=22%  Similarity=0.239  Sum_probs=406.5

Q ss_pred             cccccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccC
Q 046848          105 ISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLS  184 (956)
Q Consensus       105 l~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~  184 (956)
                      +|..+.  +++++|+|++|.+++. .+..++++++|++|+|++|.+++..|..|+++++|++|++++|.+ .......++
T Consensus        19 ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~   94 (680)
T 1ziw_A           19 VPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFA   94 (680)
T ss_dssp             CCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-CCCCTTTTT
T ss_pred             cccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc-CccChhhhc
Confidence            444443  5677777777777653 344567777777777777777766666677777777777777665 222222355


Q ss_pred             CCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhc
Q 046848          185 HLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVS  264 (956)
Q Consensus       185 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~  264 (956)
                      ++++|++|++++|.++++                          .+  ..+... ++|++|++++|.+.+..+..+..++
T Consensus        95 ~l~~L~~L~L~~n~l~~~--------------------------~~--~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~  145 (680)
T 1ziw_A           95 FCTNLTELHLMSNSIQKI--------------------------KN--NPFVKQ-KNLITLDLSHNGLSSTKLGTQVQLE  145 (680)
T ss_dssp             TCTTCSEEECCSSCCCCC--------------------------CS--CTTTTC-TTCCEEECCSSCCSCCCCCSSSCCT
T ss_pred             cCCCCCEEECCCCccCcc--------------------------Ch--hHcccc-CCCCEEECCCCcccccCchhhcccc
Confidence            555555555555544432                          22  222333 6777777777777766666665665


Q ss_pred             ccccceEEecccccccCCCcccC--CCCCCcEEECCCCcCcc-ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCc
Q 046848          265 SNLVELINLGSNQLQGSIPEAFG--HMPSLNTLFLASNQFRE-IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCT  341 (956)
Q Consensus       265 ~~L~~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~  341 (956)
                      + | ++|++++|.+++..+..+.  .+++|++|++++|.+++ .|..+..+++|+.|+++++.+.......+....   .
T Consensus       146 ~-L-~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l---~  220 (680)
T 1ziw_A          146 N-L-QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL---A  220 (680)
T ss_dssp             T-C-CEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH---T
T ss_pred             c-C-CEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh---h
Confidence            5 6 7777777776665555443  44667777777776666 345566666777777766665433222221100   0


Q ss_pred             cCCCCEEEccCCcCcccCCC-CCCCCC--CCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCC
Q 046848          342 KTSLAWLFLDSNEITGSLPN-FGGFSS--LKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLT  418 (956)
Q Consensus       342 ~~~L~~L~Ls~n~l~~~~~~-~~~l~~--L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  418 (956)
                      .++|+.|++++|.+++..+. +..++.  |++|++++|.+++..+..++.+++|++|++++|++++..+.. +..+++|+
T Consensus       221 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~  299 (680)
T 1ziw_A          221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVR  299 (680)
T ss_dssp             TSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCC
T ss_pred             hccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh-hcCCCCcc
Confidence            11666666666666655544 444433  666666666666655566666666666666666666555542 55666666


Q ss_pred             EEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccc
Q 046848          419 ILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNN  498 (956)
Q Consensus       419 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n  498 (956)
                      +|++++|...+.....               .+.......+..+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus       300 ~L~L~~~~~~~~~~~~---------------~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          300 YLNLKRSFTKQSISLA---------------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNS  363 (680)
T ss_dssp             EEECTTCBCCC---------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT-TCTTCCEEECTTC
T ss_pred             EEeccchhhhcccccc---------------cccccChhhcccCCCCCEEECCCCccCCCChhHhc-cccCCcEEECCCC
Confidence            6666654332211000               00000112455566666666666666654444332 3456666666666


Q ss_pred             cccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCcc
Q 046848          499 QIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDC  578 (956)
Q Consensus       499 ~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  578 (956)
                      .+.+.....               .                            .......++|+.|++++|++++..|..
T Consensus       364 ~~~~~~l~~---------------~----------------------------~f~~~~~~~L~~L~L~~n~l~~~~~~~  400 (680)
T 1ziw_A          364 FTSLRTLTN---------------E----------------------------TFVSLAHSPLHILNLTKNKISKIESDA  400 (680)
T ss_dssp             BSCCCEECT---------------T----------------------------TTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred             chhhhhcch---------------h----------------------------hhcccccCcCceEECCCCCCCeEChhh
Confidence            543111000               0                            000000157999999999999988999


Q ss_pred             ccCCCCCCEEEcCCCcccccCC-CCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCcccc--ccCChhHhhcC
Q 046848          579 WSQFDSLAILNLANNSFFGKIP-DSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLS--GEIPTWIGEGL  655 (956)
Q Consensus       579 ~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~ip~~~~~~l  655 (956)
                      +..+++|+.|++++|.+.+.+| ..|.++++|++|++++|++++..+..|..+++|+.|++++|.+.  +.+|..+. ++
T Consensus       401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l  479 (680)
T 1ziw_A          401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PL  479 (680)
T ss_dssp             TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TC
T ss_pred             hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cC
Confidence            9999999999999999988766 68899999999999999999999999999999999999999986  57788777 79


Q ss_pred             ccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccccccccccccccc
Q 046848          656 VNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSY  735 (956)
Q Consensus       656 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  735 (956)
                      ++|++|++++|++++..|..+.++++|++|++++|++++..+..+..-                                
T Consensus       480 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--------------------------------  527 (680)
T 1ziw_A          480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG--------------------------------  527 (680)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS--------------------------------
T ss_pred             CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC--------------------------------
Confidence            999999999999998888889999999999999999986543332110                                


Q ss_pred             ccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCcc
Q 046848          736 FDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQF  815 (956)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  815 (956)
                                 ...++..++.|+.|+|++|+++...+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++
T Consensus       528 -----------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          528 -----------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             -----------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             -----------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence                       001123455669999999999965556799999999999999999977777789999999999999999


Q ss_pred             CcCCccccc-CCCCCCeEECcCCcceecCCC
Q 046848          816 FGSIPSSLS-QLSRLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       816 ~~~ip~~l~-~l~~L~~L~ls~N~l~g~ip~  845 (956)
                      ++..|..+. .+++|+.+++++|++.|.++.
T Consensus       597 ~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CccChhHhcccccccCEEEccCCCcccCCcc
Confidence            999988887 789999999999999999875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.7e-56  Score=542.20  Aligned_cols=579  Identities=24%  Similarity=0.255  Sum_probs=424.9

Q ss_pred             CcEEEEECCCCCCCCCCCCccccccccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCC
Q 046848           83 GHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLS  162 (956)
Q Consensus        83 ~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~  162 (956)
                      .+++.|++++      +.+++..+.++.++++|++|+|++|.+++. .|..++++++|++|+|++|.+++..+..|++++
T Consensus        25 ~~l~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~   97 (680)
T 1ziw_A           25 TNITVLNLTH------NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT   97 (680)
T ss_dssp             TTCSEEECCS------SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCcEEECCC------CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence            5789999998      677776667899999999999999999976 788899999999999999999966666899999


Q ss_pred             CCcEEECCCCCCCCCCCccccCCCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCc
Q 046848          163 RLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSL  242 (956)
Q Consensus       163 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  242 (956)
                      +|++|++++|.+ ....+..++++++|++|++++|.+++..  +..++++                           ++|
T Consensus        98 ~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l---------------------------~~L  147 (680)
T 1ziw_A           98 NLTELHLMSNSI-QKIKNNPFVKQKNLITLDLSHNGLSSTK--LGTQVQL---------------------------ENL  147 (680)
T ss_dssp             TCSEEECCSSCC-CCCCSCTTTTCTTCCEEECCSSCCSCCC--CCSSSCC---------------------------TTC
T ss_pred             CCCEEECCCCcc-CccChhHccccCCCCEEECCCCcccccC--chhhccc---------------------------ccC
Confidence            999999999998 4445567899999999999999887642  2233444                           455


Q ss_pred             cEEEcCCCcCCCCcchhhHh--hcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCcc-----ccccccCCCCC
Q 046848          243 EVIVILGNNLTDSIYPWLFN--VSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE-----IPKSLGNMCNL  315 (956)
Q Consensus       243 ~~L~L~~n~l~~~~~~~l~~--~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----ip~~l~~l~~L  315 (956)
                      ++|++++|.+.+..+..+..  ... | +.|++++|.+++..|..+..+++|+.|+++++.+..     ++..+ ..++|
T Consensus       148 ~~L~L~~n~l~~~~~~~~~~~~~~~-L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L  224 (680)
T 1ziw_A          148 QELLLSNNKIQALKSEELDIFANSS-L-KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSI  224 (680)
T ss_dssp             CEEECCSSCCCCBCHHHHGGGTTCE-E-SEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCC
T ss_pred             CEEEccCCcccccCHHHhhcccccc-c-cEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccc
Confidence            55555555555444443332  233 6 777888888877777788888888888888887654     12222 35788


Q ss_pred             CEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCC-CCCCCCCCEEEeeccccccccchhhcCCCCCCE
Q 046848          316 KSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLES  394 (956)
Q Consensus       316 ~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  394 (956)
                      +.|++++|.+++..|..+..+.    .++|++|++++|.+++..+. ++.+++|++|++++|.+.+..|..+..+++|++
T Consensus       225 ~~L~L~~n~l~~~~~~~~~~l~----~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  300 (680)
T 1ziw_A          225 RNLSLSNSQLSTTSNTTFLGLK----WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY  300 (680)
T ss_dssp             CEEECTTSCCCEECTTTTGGGG----GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred             cEEEccCCcccccChhHhhccC----cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccE
Confidence            8999999988888887777664    11499999999998887765 888999999999999999888888999999999


Q ss_pred             EECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCC
Q 046848          395 LFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSG  474 (956)
Q Consensus       395 L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  474 (956)
                      |++++|...+.++.   ..+             .......+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus       301 L~L~~~~~~~~~~~---~~l-------------p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          301 LNLKRSFTKQSISL---ASL-------------PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             EECTTCBCCC---------C-------------CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred             Eeccchhhhccccc---ccc-------------cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence            99988765543221   000             00111123334444455555555555555556666666666666665


Q ss_pred             CCCCc-cchhhh--ccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccc
Q 046848          475 ISDTV-PNWFWN--QTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSIS  551 (956)
Q Consensus       475 i~~~~-~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~  551 (956)
                      +.... +...+.  ..++|+.|++++|++++..|..+..                                         
T Consensus       365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~-----------------------------------------  403 (680)
T 1ziw_A          365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW-----------------------------------------  403 (680)
T ss_dssp             SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT-----------------------------------------
T ss_pred             hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC-----------------------------------------
Confidence            43322 111111  1135667777766666544432211                                         


Q ss_pred             hhhhccCCceeEEECCCCCCCCCCC-ccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceee--eeCCcccc
Q 046848          552 FLCSITGHKLDYIDLSNNLLSGRLP-DCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT--GELPSFFT  628 (956)
Q Consensus       552 ~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~  628 (956)
                            .++|+.|++++|.+++.+| ..+.++++|++|++++|++.+..+..|..+++|+.|++++|.++  +.+|..|.
T Consensus       404 ------l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~  477 (680)
T 1ziw_A          404 ------LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ  477 (680)
T ss_dssp             ------CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred             ------CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence                  1567777777777776555 56778888888888888888777778888888888888888876  56777888


Q ss_pred             CCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCC--------ccccCCCCcCEEeccCCcCCCCcChhc
Q 046848          629 NGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIP--------LQLCHLANVQILDLSSNNISGIIPKCF  700 (956)
Q Consensus       629 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~~~~p~~~  700 (956)
                      ++++|+.|++++|+++ .+|...+.++++|++|++++|++++..+        ..+.++++|+.|+|++|+++...+..|
T Consensus       478 ~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~  556 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF  556 (680)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence            8888888888888888 4555444478888888888888875422        237889999999999999986555567


Q ss_pred             cccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhcccc
Q 046848          701 NNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAG  780 (956)
Q Consensus       701 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  780 (956)
                      .++++|                                                   +.|||++|++++..+..|..+++
T Consensus       557 ~~l~~L---------------------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~  585 (680)
T 1ziw_A          557 KDLFEL---------------------------------------------------KIIDLGLNNLNTLPASVFNNQVS  585 (680)
T ss_dssp             TTCTTC---------------------------------------------------CEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ccccCc---------------------------------------------------ceeECCCCCCCcCCHhHhCCCCC
Confidence            776666                                                   88999999999877777899999


Q ss_pred             CCEEEcccccccccCCcccc-CCCCCCEEECCCCccCcCCc
Q 046848          781 LIALNLSRNTLTGQITPKIG-QLKSLDFLDLSRNQFFGSIP  820 (956)
Q Consensus       781 L~~L~Ls~N~l~~~ip~~l~-~l~~L~~L~Ls~N~l~~~ip  820 (956)
                      |+.|+|++|++++..|..++ .+++|+.|++++|++....+
T Consensus       586 L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            99999999999988888787 78999999999999987654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.4e-54  Score=533.47  Aligned_cols=572  Identities=21%  Similarity=0.248  Sum_probs=381.9

Q ss_pred             EEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcEEeccc
Q 046848          117 YLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSF  196 (956)
Q Consensus       117 ~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~  196 (956)
                      ..|.++++++  .+|.   ..++|++|+|++|.+++..|..|.++++|++|++++|.......+..++++++|++|++++
T Consensus         8 ~~dcs~~~L~--~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            8 IAFYRFCNLT--QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEESCCCSS--CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             EEEccCCCCC--CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            3445555555  3454   2356666666666666555666666666666666666432222233344444444444444


Q ss_pred             ccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccceEEeccc
Q 046848          197 SNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSN  276 (956)
Q Consensus       197 n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n  276 (956)
                      |.+++.                          .|  ..+.+. ++                         | ++|++++|
T Consensus        83 N~l~~~--------------------------~p--~~~~~l-~~-------------------------L-~~L~Ls~n  107 (844)
T 3j0a_A           83 SKIYFL--------------------------HP--DAFQGL-FH-------------------------L-FELRLYFC  107 (844)
T ss_dssp             CCCCEE--------------------------CT--TSSCSC-SS-------------------------C-CCEECTTC
T ss_pred             CcCccc--------------------------CH--hHccCC-cc-------------------------c-CEeeCcCC
Confidence            443332                          11  111111 33                         3 44444444


Q ss_pred             ccccCCCc--ccCCCCCCcEEECCCCcCccc--cccccCCCCCCEEEccCCCCCCcchHHHhhc--CCCCccCCCCEEEc
Q 046848          277 QLQGSIPE--AFGHMPSLNTLFLASNQFREI--PKSLGNMCNLKSLTLSYNTLRGDLSEIIQNL--SDGCTKTSLAWLFL  350 (956)
Q Consensus       277 ~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~i--p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l--~~~~~~~~L~~L~L  350 (956)
                      .+++.+|.  .+.++++|++|++++|.++++  +..|.++++|++|++++|.+++..+..+..+  +      +|+.|++
T Consensus       108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~------~L~~L~L  181 (844)
T 3j0a_A          108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK------TLSFFSL  181 (844)
T ss_dssp             CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC------SSCCCEE
T ss_pred             CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC------ccceEEC
Confidence            44443333  377788888888888888774  3567888888888888888887777777665  4      7888888


Q ss_pred             cCCcCcccCCC-CCCCCC------CCEEEeeccccccccchhhcCC---CCCCEEECcCccCccccCHHhhhCCCCCCEE
Q 046848          351 DSNEITGSLPN-FGGFSS------LKRLSIANNRLNGTINKSVGQL---VKLESLFLHNNSLRGVISEAFLSNLSNLTIL  420 (956)
Q Consensus       351 s~n~l~~~~~~-~~~l~~------L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  420 (956)
                      ++|.+.+..+. +..+++      |++|++++|.+++..+..+...   .+++.+.++.+.....               
T Consensus       182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------  246 (844)
T 3j0a_A          182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---------------  246 (844)
T ss_dssp             CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------
T ss_pred             CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc---------------
Confidence            88888776554 444443      7888888887776666655432   4566777664332211               


Q ss_pred             EcCCCcccccccCCcCCC--CCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccc
Q 046848          421 YLADNSLTLEFSHDWIPP--FQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNN  498 (956)
Q Consensus       421 ~Ls~n~l~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n  498 (956)
                       +..+.+.......+..+  .+|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..+. .+++|++|++++|
T Consensus       247 -~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N  324 (844)
T 3j0a_A          247 -FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYN  324 (844)
T ss_dssp             -SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESC
T ss_pred             -ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCC
Confidence             11122222222333332  4566666666666666666666777777777777777665555443 3456777777666


Q ss_pred             cccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCcc
Q 046848          499 QIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDC  578 (956)
Q Consensus       499 ~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  578 (956)
                      .+++..|..+..                                               .++|+.|++++|.+++..+..
T Consensus       325 ~l~~~~~~~~~~-----------------------------------------------l~~L~~L~L~~N~i~~~~~~~  357 (844)
T 3j0a_A          325 LLGELYSSNFYG-----------------------------------------------LPKVAYIDLQKNHIAIIQDQT  357 (844)
T ss_dssp             CCSCCCSCSCSS-----------------------------------------------CTTCCEEECCSCCCCCCCSSC
T ss_pred             CCCccCHHHhcC-----------------------------------------------CCCCCEEECCCCCCCccChhh
Confidence            665433332111                                               067889999999998888888


Q ss_pred             ccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCCh-hHhhcCcc
Q 046848          579 WSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPT-WIGEGLVN  657 (956)
Q Consensus       579 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~  657 (956)
                      |..+++|+.|++++|.+++.     ..+++|+.|++++|+++ .+|..   ..+++.|++++|++++ ++. .....+++
T Consensus       358 ~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~-l~~~~~~~~l~~  427 (844)
T 3j0a_A          358 FKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLEN-LDILYFLLRVPH  427 (844)
T ss_dssp             SCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCS-STTHHHHTTCTT
T ss_pred             hcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCcccc-CchhhhhhcCCc
Confidence            99999999999999998843     23789999999999998 55543   5679999999999984 432 22336899


Q ss_pred             CcEEEccCCcccccCCc-cccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccc
Q 046848          658 LVVLSLKSNKFNGSIPL-QLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYF  736 (956)
Q Consensus       658 L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  736 (956)
                      |++|++++|++++..+. .+..+++|+.|++++|.+++..+..+.                                   
T Consensus       428 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~-----------------------------------  472 (844)
T 3j0a_A          428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC-----------------------------------  472 (844)
T ss_dssp             CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC-----------------------------------
T ss_pred             cceeeCCCCcccccccccccccCCccccccCCCCccccccccccc-----------------------------------
Confidence            99999999999865443 456689999999999999844332110                                   


Q ss_pred             cceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccC
Q 046848          737 DKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFF  816 (956)
Q Consensus       737 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  816 (956)
                                 ...+..++.|+.|||++|++++.+|..|..+++|+.|+|++|++++..|..+.  ++|+.|||++|+++
T Consensus       473 -----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~  539 (844)
T 3j0a_A          473 -----------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLL  539 (844)
T ss_dssp             -----------SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCC
T ss_pred             -----------hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCC
Confidence                       00112344569999999999999999999999999999999999987777666  89999999999999


Q ss_pred             cCCcccccCCCCCCeEECcCCcceecCCCCCcCCccccccccCC-CCCCCCCCCCCCCCCCCCCCCCC
Q 046848          817 GSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCGLPLPNKCPDEDSAPGPGKD  883 (956)
Q Consensus       817 ~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~~~~c~~~~~~~~~~~~  883 (956)
                      +.+|..+.   +|+.+++++|++.|.|+..    .|.......+ .++|.|....|..|....+.+..
T Consensus       540 ~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~  600 (844)
T 3j0a_A          540 APNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLF  600 (844)
T ss_dssp             CCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTT
T ss_pred             CCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcCcccccccccCccCCchhhCCCccc
Confidence            99998765   6899999999999998743    3332223445 78888888889877766554443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.1e-53  Score=512.22  Aligned_cols=519  Identities=21%  Similarity=0.176  Sum_probs=378.4

Q ss_pred             CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcEEe
Q 046848          114 HLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLD  193 (956)
Q Consensus       114 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~  193 (956)
                      ++++|||++|.+++. .|..|+++++|++|+|++|++++..|.+|+++++|++|++++|.+ ....+..++++++|++|+
T Consensus        34 ~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           34 STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL-IFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-SEECTTTTSSCTTCCEEE
T ss_pred             cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc-cccChhhhcccccccEee
Confidence            577777777777754 466777777777777777777766777777777777777777765 112222233333333333


Q ss_pred             cccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccceEEe
Q 046848          194 LSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINL  273 (956)
Q Consensus       194 Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~L  273 (956)
                      ++                                                                              
T Consensus       112 L~------------------------------------------------------------------------------  113 (606)
T 3t6q_A          112 FI------------------------------------------------------------------------------  113 (606)
T ss_dssp             CT------------------------------------------------------------------------------
T ss_pred             cc------------------------------------------------------------------------------
Confidence            33                                                                              


Q ss_pred             cccccccCCCcccCCCCCCcEEECCCCcCcccc-ccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCC--EEEc
Q 046848          274 GSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLA--WLFL  350 (956)
Q Consensus       274 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~--~L~L  350 (956)
                       +|.+++..+..+..+++|++|++++|.+++++ +.+..+++|++|++++|.+++..+..+..++      +|+  .|++
T Consensus       114 -~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~l~L~l  186 (606)
T 3t6q_A          114 -QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ------QATNLSLNL  186 (606)
T ss_dssp             -TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT------TCCSEEEEC
T ss_pred             -ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc------ccceeEEec
Confidence             33333333344667778888888888887742 3344588888888888888877788888777      777  7888


Q ss_pred             cCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccc----cCHHhhhCCCCCCEEEcCCCc
Q 046848          351 DSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGV----ISEAFLSNLSNLTILYLADNS  426 (956)
Q Consensus       351 s~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~Ls~n~  426 (956)
                      ++|.+++..|......+|++|++++|.   .++..+..+..++...+....+.+.    ++...+..+.           
T Consensus       187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~-----------  252 (606)
T 3t6q_A          187 NGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC-----------  252 (606)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG-----------
T ss_pred             CCCccCccChhHhhhccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhh-----------
Confidence            888888777775556778888888776   3344455555554433332222111    1111111111           


Q ss_pred             ccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCC
Q 046848          427 LTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPN  506 (956)
Q Consensus       427 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~  506 (956)
                                 ..+++.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+ ..+++|++|++++|.+++..|.
T Consensus       253 -----------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~  319 (606)
T 3t6q_A          253 -----------EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQI  319 (606)
T ss_dssp             -----------GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGG
T ss_pred             -----------cCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchh
Confidence                       114555666666665555566666666666666666665 444443 2344566666666655533332


Q ss_pred             CCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCc-cccCCCCC
Q 046848          507 LSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPD-CWSQFDSL  585 (956)
Q Consensus       507 ~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L  585 (956)
                      .+.                                             .  .++|++|++++|.+.+.+|. .+..+++|
T Consensus       320 ~~~---------------------------------------------~--l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          320 SAS---------------------------------------------N--FPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             CGG---------------------------------------------G--CTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             hhh---------------------------------------------c--cCcCCEEECCCCCcccccchhhhhccCcC
Confidence            110                                             1  16788888888888866654 48889999


Q ss_pred             CEEEcCCCcccccC--CCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEc
Q 046848          586 AILNLANNSFFGKI--PDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSL  663 (956)
Q Consensus       586 ~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L  663 (956)
                      ++|++++|.+.+..  |..+..+++|++|++++|++++..|..|..+++|+.|++++|++.+..|...+..+++|++|++
T Consensus       353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  432 (606)
T 3t6q_A          353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL  432 (606)
T ss_dssp             CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred             CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence            99999999998766  7789999999999999999999999999999999999999999987777664557999999999


Q ss_pred             cCCcccccCCccccCCCCcCEEeccCCcCCCCc---ChhccccccCcccccCccccccccccccccccccccccccccee
Q 046848          664 KSNKFNGSIPLQLCHLANVQILDLSSNNISGII---PKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAV  740 (956)
Q Consensus       664 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  740 (956)
                      ++|.+.+..|..+..+++|++|++++|++++..   +..+..+++                                   
T Consensus       433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~-----------------------------------  477 (606)
T 3t6q_A          433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR-----------------------------------  477 (606)
T ss_dssp             TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT-----------------------------------
T ss_pred             CCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC-----------------------------------
Confidence            999999888999999999999999999998632   234444444                                   


Q ss_pred             EEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCc
Q 046848          741 LTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIP  820 (956)
Q Consensus       741 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  820 (956)
                                      |++|+|++|++++..|..+..+++|+.|+|++|++++.+|+.+.+++.| .|++++|++++.+|
T Consensus       478 ----------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~  540 (606)
T 3t6q_A          478 ----------------LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP  540 (606)
T ss_dssp             ----------------CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred             ----------------ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence                            4899999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             ccccCCCCCCeEECcCCcceecCCC
Q 046848          821 SSLSQLSRLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       821 ~~l~~l~~L~~L~ls~N~l~g~ip~  845 (956)
                      ..+..+++|+.+++++|++.|.++.
T Consensus       541 ~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          541 SLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             GGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             hhcccCCCCCEEeCCCCCccccCCc
Confidence            9999999999999999999999874

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.3e-52  Score=497.01  Aligned_cols=524  Identities=20%  Similarity=0.182  Sum_probs=361.7

Q ss_pred             CcEEEEECCCCCCCCCCCCccccccccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCC
Q 046848           83 GHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLS  162 (956)
Q Consensus        83 ~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~  162 (956)
                      ..++.|++++      +.+++..+.++.++++|++|+|++|.+.+. .|..|+++++|++|+|++|++++..|..|++++
T Consensus        33 ~~l~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  105 (606)
T 3t6q_A           33 NSTECLEFSF------NVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPK  105 (606)
T ss_dssp             TTCCEEECTT------CCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred             CcCcEEEccC------CccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence            4689999998      678877788999999999999999999875 688999999999999999999988899999999


Q ss_pred             CCcEEECCCCCCCCCCCccccCCCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCc
Q 046848          163 RLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSL  242 (956)
Q Consensus       163 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  242 (956)
                      +|++|++++|.+ ....+..++++++|++|++++|.+.+++.                         +   .+.. +++|
T Consensus       106 ~L~~L~L~~n~i-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------------~---~~~~-l~~L  155 (606)
T 3t6q_A          106 ALKHLFFIQTGI-SSIDFIPLHNQKTLESLYLGSNHISSIKL-------------------------P---KGFP-TEKL  155 (606)
T ss_dssp             TCCEEECTTSCC-SCGGGSCCTTCTTCCEEECCSSCCCCCCC-------------------------C---TTCC-CTTC
T ss_pred             cccEeeccccCc-ccCCcchhccCCcccEEECCCCcccccCc-------------------------c---cccC-Cccc
Confidence            999999999997 33334456677777777777766655310                         1   1111 2455


Q ss_pred             cEEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCCc--EEECCCCcCccccccccCCCCCCEEEc
Q 046848          243 EVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLN--TLFLASNQFREIPKSLGNMCNLKSLTL  320 (956)
Q Consensus       243 ~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~--~L~Ls~n~l~~ip~~l~~l~~L~~L~L  320 (956)
                      ++|++++|.                          +++..|..++.+++|+  .|++++|.++++++......+|++|++
T Consensus       156 ~~L~L~~n~--------------------------l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l  209 (606)
T 3t6q_A          156 KVLDFQNNA--------------------------IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF  209 (606)
T ss_dssp             CEEECCSSC--------------------------CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred             CEEEcccCc--------------------------ccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence            555555544                          4444455555666666  667777777765444444466777777


Q ss_pred             cCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCc
Q 046848          321 SYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNN  400 (956)
Q Consensus       321 s~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  400 (956)
                      ++|.   ..+..+..+.      .+....+....+.          .+...++....+     ..+... +|++|++++|
T Consensus       210 ~~~~---~~~~~~~~l~------~~~l~~l~~~~~~----------~~~~~~i~~~~~-----~~l~~~-~L~~L~l~~n  264 (606)
T 3t6q_A          210 GGTQ---NLLVIFKGLK------NSTIQSLWLGTFE----------DMDDEDISPAVF-----EGLCEM-SVESINLQKH  264 (606)
T ss_dssp             TTCS---CHHHHHHHTT------TCEEEEEECCCCT----------TSCCCCCCGGGG-----GGGGGS-EEEEEECTTC
T ss_pred             CCch---hHHHHhhhcc------ccchhheechhhc----------cccccccChhHh-----chhhcC-ceeEEEeecC
Confidence            7775   3455555554      3333333222211          111111111111     111111 4555666666


Q ss_pred             cCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCcc
Q 046848          401 SLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVP  480 (956)
Q Consensus       401 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~  480 (956)
                      .+++..+. .+..+++|++|++++|.++ ..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|
T Consensus       265 ~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  342 (606)
T 3t6q_A          265 YFFNISSN-TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG  342 (606)
T ss_dssp             CCSSCCTT-TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred             ccCccCHH-HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence            55554443 2455555555555555554 222233333444444444444444444445555555555555555443333


Q ss_pred             chhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCc
Q 046848          481 NWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHK  560 (956)
Q Consensus       481 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~  560 (956)
                      ......+                                                                       ++
T Consensus       343 ~~~~~~l-----------------------------------------------------------------------~~  351 (606)
T 3t6q_A          343 TGCLENL-----------------------------------------------------------------------EN  351 (606)
T ss_dssp             SSTTTTC-----------------------------------------------------------------------TT
T ss_pred             hhhhhcc-----------------------------------------------------------------------Cc
Confidence            3222222                                                                       45


Q ss_pred             eeEEECCCCCCCCCC--CccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCc-cccCCCCCcEEe
Q 046848          561 LDYIDLSNNLLSGRL--PDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPS-FFTNGSQLTLMD  637 (956)
Q Consensus       561 L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~  637 (956)
                      |++|++++|.+++..  +..+..+++|++|++++|++.+..|..|..+++|++|++++|++++..|. .+..+++|++|+
T Consensus       352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  431 (606)
T 3t6q_A          352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN  431 (606)
T ss_dssp             CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred             CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence            666666666666544  66778888888888888888888888888888888888888888877654 488888899999


Q ss_pred             cCCccccccCChhHhhcCccCcEEEccCCccccc---CCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcc
Q 046848          638 LGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGS---IPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNL  714 (956)
Q Consensus       638 Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~  714 (956)
                      +++|.+++..|..+. .+++|++|++++|++.+.   .+..+..+++|++|++++|++++..|..|..++.|        
T Consensus       432 l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------  502 (606)
T 3t6q_A          432 LSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM--------  502 (606)
T ss_dssp             CTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC--------
T ss_pred             CCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC--------
Confidence            999988866666665 688999999999988763   23568889999999999999998888888777666        


Q ss_pred             cccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccccc
Q 046848          715 TLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQ  794 (956)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  794 (956)
                                                                 +.|||++|++++.+|..+.+++.| .|+|++|++++.
T Consensus       503 -------------------------------------------~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~  538 (606)
T 3t6q_A          503 -------------------------------------------NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII  538 (606)
T ss_dssp             -------------------------------------------CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred             -------------------------------------------CEEECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence                                                       889999999999999999999999 999999999988


Q ss_pred             CCccccCCCCCCEEECCCCccCcCCc
Q 046848          795 ITPKIGQLKSLDFLDLSRNQFFGSIP  820 (956)
Q Consensus       795 ip~~l~~l~~L~~L~Ls~N~l~~~ip  820 (956)
                      +|..++.+++|+.|++++|++++..+
T Consensus       539 ~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          539 LPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CHhhcccCCCCCEEeCCCCCccccCC
Confidence            88889999999999999999987655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.7e-52  Score=497.39  Aligned_cols=448  Identities=19%  Similarity=0.133  Sum_probs=332.9

Q ss_pred             ceEEecccccccCCCcccCCCCCCcEEECCCCcCcc--ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCC
Q 046848          269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE--IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLA  346 (956)
Q Consensus       269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~  346 (956)
                      ++|++++|.+++..+..++++++|++|++++|.+++  +|..+.++++|++|++++|.+++..+..+..+..-.  ..+.
T Consensus       107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~--~~l~  184 (606)
T 3vq2_A          107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP--QVNL  184 (606)
T ss_dssp             CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT--TCCC
T ss_pred             CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc--cccc
Confidence            333334444444444556777888888888888875  678888888888888888888877666665554000  0145


Q ss_pred             EEEccCCcCcccCCCCCCCCCCCEEEeeccccc-cccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCC
Q 046848          347 WLFLDSNEITGSLPNFGGFSSLKRLSIANNRLN-GTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN  425 (956)
Q Consensus       347 ~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  425 (956)
                      +|++++|.+++..+......+|++|++++|.+. +..|..++.++.|+.+++..+.+.+...         +.       
T Consensus       185 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~---------l~-------  248 (606)
T 3vq2_A          185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN---------LE-------  248 (606)
T ss_dssp             EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC---------CS-------
T ss_pred             eeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc---------cc-------
Confidence            788888888877766444558889999988886 4566778888888888876555432210         00       


Q ss_pred             cccccccCCcCCC--CCcceEEc-CCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccc
Q 046848          426 SLTLEFSHDWIPP--FQLSQVNL-GSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKG  502 (956)
Q Consensus       426 ~l~~~~~~~~~~~--~~L~~L~L-~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~  502 (956)
                         ......+..+  ..++.+++ ..+.+.+..|. +..+++|+.|++++|.+.. +| . ...+++|++|++++|.+ +
T Consensus       249 ---~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~-l~~~~~L~~L~l~~n~l-~  320 (606)
T 3vq2_A          249 ---IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-D-VPKHFKWQSLSIIRCQL-K  320 (606)
T ss_dssp             ---CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-C-CCTTCCCSEEEEESCCC-S
T ss_pred             ---ccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-h-ccccccCCEEEcccccC-c
Confidence               0000011111  13555565 55556666665 7777888888888887753 33 2 23345677777776666 3


Q ss_pred             cCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCC
Q 046848          503 KLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQF  582 (956)
Q Consensus       503 ~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l  582 (956)
                      .+|..  .                                               .++|+.|++++|...+.+  .+..+
T Consensus       321 ~lp~~--~-----------------------------------------------l~~L~~L~l~~n~~~~~~--~~~~l  349 (606)
T 3vq2_A          321 QFPTL--D-----------------------------------------------LPFLKSLTLTMNKGSISF--KKVAL  349 (606)
T ss_dssp             SCCCC--C-----------------------------------------------CSSCCEEEEESCSSCEEC--CCCCC
T ss_pred             ccccC--C-----------------------------------------------CCccceeeccCCcCccch--hhccC
Confidence            44421  0                                               156777788777555433  56678


Q ss_pred             CCCCEEEcCCCccccc--CCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcE
Q 046848          583 DSLAILNLANNSFFGK--IPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVV  660 (956)
Q Consensus       583 ~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~  660 (956)
                      ++|++|++++|++++.  +|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..|...+..+++|++
T Consensus       350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  428 (606)
T 3vq2_A          350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY  428 (606)
T ss_dssp             TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred             CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence            8899999999988865  47788888999999999999885 56788889999999999999987666333447899999


Q ss_pred             EEccCCcccccCCccccCCCCcCEEeccCCcCCC-CcChhccccccCcccccCcccccccccccccccccccccccccce
Q 046848          661 LSLKSNKFNGSIPLQLCHLANVQILDLSSNNISG-IIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKA  739 (956)
Q Consensus       661 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  739 (956)
                      |++++|++.+..|..+..+++|++|++++|++++ .+|..+..+++|                                 
T Consensus       429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L---------------------------------  475 (606)
T 3vq2_A          429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL---------------------------------  475 (606)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------------------------------
T ss_pred             EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC---------------------------------
Confidence            9999999998888899999999999999999987 467777776666                                 


Q ss_pred             eEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCC
Q 046848          740 VLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSI  819 (956)
Q Consensus       740 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i  819 (956)
                                        +.|+|++|++++..|..+..+++|+.|+|++|++++.+|..++.+++|+.|||++|+++ .+
T Consensus       476 ------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~  536 (606)
T 3vq2_A          476 ------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TS  536 (606)
T ss_dssp             ------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CE
T ss_pred             ------------------CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-cc
Confidence                              88999999999999999999999999999999999999999999999999999999999 67


Q ss_pred             cccccCCC-CCCeEECcCCcceecCCCC
Q 046848          820 PSSLSQLS-RLSVMDLSYNNLSGKIPSG  846 (956)
Q Consensus       820 p~~l~~l~-~L~~L~ls~N~l~g~ip~~  846 (956)
                      |..+..++ +|++|++++|++.|.+|..
T Consensus       537 p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          537 KGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             ESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             CHhHhhhcccCcEEEccCCCcccCCccH
Confidence            77798887 5999999999999998753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5e-53  Score=505.49  Aligned_cols=272  Identities=19%  Similarity=0.206  Sum_probs=176.0

Q ss_pred             CCHHHHHHHHHHHccCCCCCC--------CCCCCCCCCCCCCCccc---cceeecCCCCcEEEEECCCCCCCCCCCCccc
Q 046848           36 CIDEEREALLAFKQGLVDESG--------ILSSWGREDEKRDCCGW---RGVNCSNRTGHVYKLDLHILQVFPSPCLKGT  104 (956)
Q Consensus        36 ~~~~~~~~ll~~k~~~~~~~~--------~~~~W~~~~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~l~g~  104 (956)
                      ....|+.||.++++++.++..        ...+|.   .+++||.|   .||+|+.. |||+.|+|++      ..+.|.
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~------~~l~g~   96 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEG------FGASGR   96 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTT------SCCEEE
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecC------cccCCc
Confidence            346799999999999864422        234797   46899999   99999754 8999999998      789999


Q ss_pred             cccccccccCCCEEeCCCCCCC------C-----CCCCccccCCCCCCEEecCCCCCCCCCCccCCCC-CCCcEEECCCC
Q 046848          105 ISSSLLILQHLTYLDLSGNNFS------G-----SSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNL-SRLQVLDIGFN  172 (956)
Q Consensus       105 l~~~l~~l~~L~~L~Ls~n~~~------~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L-~~L~~L~Ls~n  172 (956)
                      +|++++++++|++|||++|.+.      +     ..+|...  +.+|+ ++++++.+.+.+|..++.+ ..+..+++...
T Consensus        97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~  173 (636)
T 4eco_A           97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQK  173 (636)
T ss_dssp             ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSC
T ss_pred             CChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccc
Confidence            9999999999999999999762      1     0144433  45667 7777777777666655421 12222222211


Q ss_pred             CCCCCCCccccCCCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEc--CCC
Q 046848          173 SLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVI--LGN  250 (956)
Q Consensus       173 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L--~~n  250 (956)
                      .+                         ...        ..                           ..++.+.+  ..|
T Consensus       174 ~~-------------------------~~~--------~~---------------------------~~l~~l~l~~~~n  193 (636)
T 4eco_A          174 SI-------------------------KKS--------SR---------------------------ITLKDTQIGQLSN  193 (636)
T ss_dssp             CC-------------------------CCC--------CC---------------------------CCCCTTTTTCCSC
T ss_pred             cc-------------------------ccc--------cc---------------------------cchhhhhhccccC
Confidence            11                         000        00                           01111111  234


Q ss_pred             cCCCCcchhhHhhcccccceEEecccccccC-----------------CCcccC--CCCCCcEEECCCCcCcc-cccccc
Q 046848          251 NLTDSIYPWLFNVSSNLVELINLGSNQLQGS-----------------IPEAFG--HMPSLNTLFLASNQFRE-IPKSLG  310 (956)
Q Consensus       251 ~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~n~l~~-ip~~l~  310 (956)
                      ++++ +|..+++++. | ++|++++|.+++.                 +|+.++  ++++|++|++++|.+.+ +|..+.
T Consensus       194 ~l~~-ip~~l~~l~~-L-~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          194 NITF-VSKAVMRLTK-L-RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             EEEE-ECGGGGGCTT-C-CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             CCcc-CCHHHhcccC-C-CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            5555 6666666666 6 7777777777764                 777777  77788888888877766 777777


Q ss_pred             CCCCCCEEEccCCC-CCC-cchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCCCCCEEEeeccccccccch--hh
Q 046848          311 NMCNLKSLTLSYNT-LRG-DLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINK--SV  386 (956)
Q Consensus       311 ~l~~L~~L~Ls~n~-l~~-~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~l  386 (956)
                      ++++|++|++++|. +++ .+|..++.+..                       +..+++|++|++++|.++ .+|.  .+
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~-----------------------~~~l~~L~~L~L~~n~l~-~ip~~~~l  326 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALAD-----------------------APVGEKIQIIYIGYNNLK-TFPVETSL  326 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHH-----------------------SGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhc-----------------------cccCCCCCEEECCCCcCC-ccCchhhh
Confidence            77888888888877 776 67777766510                       112344555555555555 4555  56


Q ss_pred             cCCCCCCEEECcCccCccccC
Q 046848          387 GQLVKLESLFLHNNSLRGVIS  407 (956)
Q Consensus       387 ~~l~~L~~L~L~~n~l~~~~~  407 (956)
                      +.+++|++|++++|+++|.+|
T Consensus       327 ~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          327 QKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             TTCTTCCEEECCSCCCEEECC
T ss_pred             ccCCCCCEEeCcCCcCccchh
Confidence            666666666666666665544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.6e-50  Score=480.83  Aligned_cols=526  Identities=21%  Similarity=0.190  Sum_probs=358.8

Q ss_pred             cccccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccC
Q 046848          105 ISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLS  184 (956)
Q Consensus       105 l~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~  184 (956)
                      +|..+.  ++|++|+|++|.+++. .+..+.++++|++|+|++|.+++..|.+|+++++|++|++++|.+ ....+..++
T Consensus        26 ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~  101 (606)
T 3vq2_A           26 VPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI-QSFSPGSFS  101 (606)
T ss_dssp             CCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CCCCTTSST
T ss_pred             CCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc-cccChhhcC
Confidence            444433  7889999999999864 555888999999999999999887888899999999999999987 445567788


Q ss_pred             CCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhc
Q 046848          185 HLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVS  264 (956)
Q Consensus       185 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~  264 (956)
                      ++++|++|++++|.+++.+.  ..++++++|++|++++|.+.+.                          .+|..+.+++
T Consensus       102 ~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~--------------------------~lp~~~~~l~  153 (606)
T 3vq2_A          102 GLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSC--------------------------KLPAYFSNLT  153 (606)
T ss_dssp             TCTTCCEEECTTSCCCCSSS--SCCTTCTTCCEEECCSSCCCCC--------------------------CCCGGGGTCT
T ss_pred             CcccCCEEEccCCccccccc--cccCCCCCCCEEeCCCCcccce--------------------------echHhHhhcC
Confidence            88888888888888877542  2355666666666666655431                          2333344443


Q ss_pred             ccccceEEecccccccCCCcccCCCCCC----cEEECCCCcCccccccccCCCCCCEEEccCCCCC-CcchHHHhhcCCC
Q 046848          265 SNLVELINLGSNQLQGSIPEAFGHMPSL----NTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLR-GDLSEIIQNLSDG  339 (956)
Q Consensus       265 ~~L~~~L~Ls~n~l~~~~p~~l~~l~~L----~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~~  339 (956)
                      + | ++|++++|.+++..+..++.+++|    ++|++++|.++++|.......+|++|++++|.++ +..|..+..++  
T Consensus       154 ~-L-~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~--  229 (606)
T 3vq2_A          154 N-L-VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLA--  229 (606)
T ss_dssp             T-C-CEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTT--
T ss_pred             C-C-CEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccc--
Confidence            3 4 444444444444444444433333    3566666666665544444446666777666665 33455556555  


Q ss_pred             CccCCCCEEEccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEEC-cCccCccccCHHhhhCCCCCC
Q 046848          340 CTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFL-HNNSLRGVISEAFLSNLSNLT  418 (956)
Q Consensus       340 ~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~~~~~l~~L~  418 (956)
                          .|+.+++..+.+.+...       +..       +....+..+..+ .++.+++ ..|.+.+.++.  +..+++|+
T Consensus       230 ----~L~~l~l~~~~~~~~~~-------l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~  288 (606)
T 3vq2_A          230 ----GLHVHRLILGEFKDERN-------LEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVS  288 (606)
T ss_dssp             ----TCEEEEEEEECCTTSCC-------CSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCS
T ss_pred             ----ccccccccccccccCCc-------ccc-------cChHHhhhhhhc-cHhheeccccccccccccc--cccCCCCC
Confidence                56665555443332110       000       000111111111 2333444 33344444333  34444444


Q ss_pred             EEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccc
Q 046848          419 ILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNN  498 (956)
Q Consensus       419 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n  498 (956)
                      .|++++|.+..                         +| ++..+++|++|++++|.+ +.+|..   .+++|++|++++|
T Consensus       289 ~L~l~~~~~~~-------------------------l~-~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~l~~n  338 (606)
T 3vq2_A          289 AMSLAGVSIKY-------------------------LE-DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLTLTMN  338 (606)
T ss_dssp             EEEEESCCCCC-------------------------CC-CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEEEESC
T ss_pred             EEEecCccchh-------------------------hh-hccccccCCEEEcccccC-cccccC---CCCccceeeccCC
Confidence            44444444332                         11 233334444444444444 344422   3445555555555


Q ss_pred             cccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCC--CC
Q 046848          499 QIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGR--LP  576 (956)
Q Consensus       499 ~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p  576 (956)
                      +..+.++..                                                 ..++|++|++++|.+++.  +|
T Consensus       339 ~~~~~~~~~-------------------------------------------------~l~~L~~L~ls~n~l~~~~~~~  369 (606)
T 3vq2_A          339 KGSISFKKV-------------------------------------------------ALPSLSYLDLSRNALSFSGCCS  369 (606)
T ss_dssp             SSCEECCCC-------------------------------------------------CCTTCCEEECCSSCEEEEEECC
T ss_pred             cCccchhhc-------------------------------------------------cCCCCCEEECcCCccCCCcchh
Confidence            332211000                                                 005778888888887765  47


Q ss_pred             ccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCC-ccccCCCCCcEEecCCccccccCChhHhhcC
Q 046848          577 DCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELP-SFFTNGSQLTLMDLGKNGLSGEIPTWIGEGL  655 (956)
Q Consensus       577 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l  655 (956)
                      ..+..+++|++|++++|.+.+ +|..+..+++|++|++++|++++..| ..+..+++|++|++++|++.+.+|..+. ++
T Consensus       370 ~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l  447 (606)
T 3vq2_A          370 YSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GL  447 (606)
T ss_dssp             HHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-TC
T ss_pred             hhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc-CC
Confidence            788899999999999999885 56888999999999999999998877 6889999999999999999977787776 79


Q ss_pred             ccCcEEEccCCcccc-cCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccc
Q 046848          656 VNLVVLSLKSNKFNG-SIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKS  734 (956)
Q Consensus       656 ~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  734 (956)
                      ++|++|++++|++.+ .+|..+..+++|+.|++++|++++..|..+..+++|                            
T Consensus       448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------------  499 (606)
T 3vq2_A          448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL----------------------------  499 (606)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------------
T ss_pred             CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC----------------------------
Confidence            999999999999987 478889999999999999999999888888877766                            


Q ss_pred             cccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCC-CCCEEECCCC
Q 046848          735 YFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLK-SLDFLDLSRN  813 (956)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~Ls~N  813 (956)
                                             ++|+|++|++++.+|..+.++++|+.|+|++|+++ .+|..+..++ +|++|++++|
T Consensus       500 -----------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          500 -----------------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             -----------------------CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSC
T ss_pred             -----------------------CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCC
Confidence                                   89999999999999999999999999999999999 6888899997 6999999999


Q ss_pred             ccCcCCc
Q 046848          814 QFFGSIP  820 (956)
Q Consensus       814 ~l~~~ip  820 (956)
                      ++.+..+
T Consensus       556 ~~~c~c~  562 (606)
T 3vq2_A          556 SVACICE  562 (606)
T ss_dssp             CCCCSST
T ss_pred             CcccCCc
Confidence            9987655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.5e-49  Score=487.65  Aligned_cols=523  Identities=23%  Similarity=0.214  Sum_probs=393.8

Q ss_pred             EEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCcc-c-cccccCCCCCCEEEcc
Q 046848          244 VIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE-I-PKSLGNMCNLKSLTLS  321 (956)
Q Consensus       244 ~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-i-p~~l~~l~~L~~L~Ls  321 (956)
                      ..+.++++++. +|.    ....+ +.|+|++|.+++..|..|.++++|++|++++|.... + |..|.++++|++|+|+
T Consensus         8 ~~dcs~~~L~~-vP~----lp~~l-~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            8 IAFYRFCNLTQ-VPQ----VLNTT-ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEESCCCSSC-CCS----SCTTC-CEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             EEEccCCCCCC-CCC----CCCCc-CEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            44455555543 343    22226 888888888888888888888888888888885544 5 6778888888888888


Q ss_pred             CCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCC---CCCCCCCCEEEeeccccccccc-hhhcCCCCCCEEEC
Q 046848          322 YNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN---FGGFSSLKRLSIANNRLNGTIN-KSVGQLVKLESLFL  397 (956)
Q Consensus       322 ~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L  397 (956)
                      +|.+++..|..+..++      +|++|+|++|.+++..+.   +..+++|++|++++|.+++..+ ..++++++|++|++
T Consensus        82 ~N~l~~~~p~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L  155 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLF------HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF  155 (844)
T ss_dssp             TCCCCEECTTSSCSCS------SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred             CCcCcccCHhHccCCc------ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence            8888887788888877      888888888888875443   7888888888888888877654 56888888888888


Q ss_pred             cCccCccccCHHhhhCC--CCCCEEEcCCCcccccccCCcCCCCC------cceEEcCCCCCCCCCchhhhcc---ccee
Q 046848          398 HNNSLRGVISEAFLSNL--SNLTILYLADNSLTLEFSHDWIPPFQ------LSQVNLGSCKIGPRFPKWLRNQ---NQIL  466 (956)
Q Consensus       398 ~~n~l~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~  466 (956)
                      ++|.+++..+.. +..+  ++|+.|+++.|.+.+..+..+..+.+      |+.|++++|.+.+..+..+...   ..++
T Consensus       156 s~N~i~~~~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~  234 (844)
T 3j0a_A          156 SSNQIFLVCEHE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF  234 (844)
T ss_dssp             ESSCCCCCCSGG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred             CCCcCCeeCHHH-cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence            888888777664 4545  78888888888888776666555443      7888888887777666665543   5677


Q ss_pred             EEEeeCCCC---------CCCccchhhhc-cCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCC
Q 046848          467 SLDISNSGI---------SDTVPNWFWNQ-TYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNA  536 (956)
Q Consensus       467 ~L~Ls~n~i---------~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l  536 (956)
                      .++++.+.+         .+..+..+... .++|+.|++++|.+.+..|..+..+                      .++
T Consensus       235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l----------------------~~L  292 (844)
T 3j0a_A          235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL----------------------KDL  292 (844)
T ss_dssp             EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC----------------------CCC
T ss_pred             ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC----------------------CCC
Confidence            777763322         22222222221 2467777777776665555444333                      345


Q ss_pred             ceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccC
Q 046848          537 SFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYN  616 (956)
Q Consensus       537 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  616 (956)
                      +.|++++|++.+..+..... .++|++|++++|.+++..|..|..+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus       293 ~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~  371 (844)
T 3j0a_A          293 KVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD  371 (844)
T ss_dssp             CEEEEESCCCCEECTTTTTT-CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred             CEEECCCCcCCCCChHHhcC-CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence            55555555555544322111 17899999999999988888999999999999999999888888899999999999999


Q ss_pred             ceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccC-CccccCCCCcCEEeccCCcCCCC
Q 046848          617 NRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSI-PLQLCHLANVQILDLSSNNISGI  695 (956)
Q Consensus       617 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~  695 (956)
                      |.+++. +    .+++|+.|++++|+++ .+|..    ..+++.|++++|++.+.. +..+..+++|+.|+|++|++++.
T Consensus       372 N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~  441 (844)
T 3j0a_A          372 NALTTI-H----FIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC  441 (844)
T ss_dssp             CCSCCC-S----SCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCC
T ss_pred             CCCCcc-c----CCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccc
Confidence            998842 2    3788999999999998 77763    567899999999998642 23466889999999999999865


Q ss_pred             cChh-ccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCC-----C
Q 046848          696 IPKC-FNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLG-----G  769 (956)
Q Consensus       696 ~p~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~  769 (956)
                      .+.. +..+                                                   ++|+.|+|++|.++     +
T Consensus       442 ~~~~~~~~~---------------------------------------------------~~L~~L~Ls~N~l~~~~~~~  470 (844)
T 3j0a_A          442 SGDQTPSEN---------------------------------------------------PSLEQLFLGENMLQLAWETE  470 (844)
T ss_dssp             CSSSSSCSC---------------------------------------------------TTCCBCEEESCCCSSSCCSC
T ss_pred             ccccccccC---------------------------------------------------CccccccCCCCccccccccc
Confidence            4431 2222                                                   34588999999997     4


Q ss_pred             CCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcC
Q 046848          770 EVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQL  849 (956)
Q Consensus       770 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~  849 (956)
                      ..|..|..+++|+.|+|++|++++.+|..|+.+++|+.|+|++|++++..|..+.  ++|+.||+++|++++.+|..  +
T Consensus       471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~  546 (844)
T 3j0a_A          471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--F  546 (844)
T ss_dssp             CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--C
T ss_pred             cchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--h
Confidence            5567789999999999999999999999999999999999999999988887776  88999999999999999864  5


Q ss_pred             CccccccccCC-CCCCCCC
Q 046848          850 QSFSTSMYAGN-ELCGLPL  867 (956)
Q Consensus       850 ~~~~~~~~~~n-~l~~~~~  867 (956)
                      ..+....+.+| ..|..+.
T Consensus       547 ~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          547 VSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             SSCCEEEEEEECCCCSSSC
T ss_pred             CCcCEEEecCCCccccccc
Confidence            56777778889 6676554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.5e-48  Score=472.76  Aligned_cols=518  Identities=18%  Similarity=0.222  Sum_probs=336.3

Q ss_pred             cCCCHHHHHHHHHHHccCCCCCCCCCCCCCCC--CCCCC--ccc------------cceeecCCCCcEEEEECCCCCCCC
Q 046848           34 IRCIDEEREALLAFKQGLVDESGILSSWGRED--EKRDC--CGW------------RGVNCSNRTGHVYKLDLHILQVFP   97 (956)
Q Consensus        34 ~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~~   97 (956)
                      ..+..+|++||++||+++.+|     +|....  ...+|  |.|            .||.|+. .+||+.|+|++     
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~-----  332 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG-----  332 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT-----
T ss_pred             cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc-----
Confidence            346688999999999999776     786311  01345  999            9999986 69999999999     


Q ss_pred             CCCCccccccccccccCCCEEeC-CCCCCCCCCCCccccCC----C-----CCCE------Eec-CCCCCC---------
Q 046848           98 SPCLKGTISSSLLILQHLTYLDL-SGNNFSGSSIPEFIGSL----S-----KLSY------LGL-SNTEFA---------  151 (956)
Q Consensus        98 ~~~l~g~l~~~l~~l~~L~~L~L-s~n~~~~~~~p~~l~~l----~-----~L~~------L~L-s~n~l~---------  151 (956)
                       ..+.|.+|+++++|++|++||| ++|.++|. .|-.....    .     .++.      ++. ....+.         
T Consensus       333 -~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~  410 (876)
T 4ecn_A          333 -FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR  410 (876)
T ss_dssp             -TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred             -CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence             7899999999999999999999 88877654 22110000    0     0000      000 000000         


Q ss_pred             --CCCCccCCCCCCCcEEECCC--CCCCCCCCccccCCCCCCcEEecccccCCCC---------------chhHHhhc--
Q 046848          152 --GPIPLQLGNLSRLQVLDIGF--NSLISGENLEWLSHLSSLIYLDLSFSNLSKF---------------SNWMQVLS--  210 (956)
Q Consensus       152 --~~~p~~l~~L~~L~~L~Ls~--n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~---------------~~~~~~l~--  210 (956)
                        ...+........++.+.++.  |.+.  ..|..++++++|++|++++|.+++.               ..+|..++  
T Consensus       411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~--~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~  488 (876)
T 4ecn_A          411 NPEMKPIKKDSRISLKDTQIGNLTNRIT--FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS  488 (876)
T ss_dssp             CTTSCCCCCCCCCCCCTTTTTCCSCEEE--EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG
T ss_pred             CccccccccccccchhhceeccccCccc--chhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhc
Confidence              00000111111222222222  2221  1344455555555555555555440               02455666  


Q ss_pred             CCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCc-CCC-CcchhhHhhc-------ccccceEEecccccccC
Q 046848          211 KLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNN-LTD-SIYPWLFNVS-------SNLVELINLGSNQLQGS  281 (956)
Q Consensus       211 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~l~~~~-------~~L~~~L~Ls~n~l~~~  281 (956)
                      ++++|++|++++|.+.+.+|  ..+.+. ++|+.|++++|+ +++ .+|..++.+.       . | +.|++++|.++ .
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP--~~l~~L-~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~-L-~~L~Ls~N~L~-~  562 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLP--DFLYDL-PELQSLNIACNRGISAAQLKADWTRLADDEDTGPK-I-QIFYMGYNNLE-E  562 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCC--GGGGGC-SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT-C-CEEECCSSCCC-B
T ss_pred             cCCCCCEEECcCCCCCccCh--HHHhCC-CCCCEEECcCCCCcccccchHHHHhhhhcccccCC-c-cEEEeeCCcCC-c
Confidence            88888888888888888888  566665 899999999998 888 8998888877       6 8 99999999999 7


Q ss_pred             CCc--ccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCC-CCEEEccCCcCccc
Q 046848          282 IPE--AFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTS-LAWLFLDSNEITGS  358 (956)
Q Consensus       282 ~p~--~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~-L~~L~Ls~n~l~~~  358 (956)
                      +|.  .++++++|++|++++|.++.+| .+..+++|+.|+|++|.++ .+|..+..++      + |+.|++++|.++..
T Consensus       563 ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~------~~L~~L~Ls~N~L~~l  634 (876)
T 4ecn_A          563 FPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFT------DQVEGLGFSHNKLKYI  634 (876)
T ss_dssp             CCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEEC------TTCCEEECCSSCCCSC
T ss_pred             cCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhcc------ccCCEEECcCCCCCcC
Confidence            888  8999999999999999999998 8999999999999999998 7777788777      7 99999999999844


Q ss_pred             CCCCCCCC--CCCEEEeeccccccccchh---hc--CCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccc
Q 046848          359 LPNFGGFS--SLKRLSIANNRLNGTINKS---VG--QLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEF  431 (956)
Q Consensus       359 ~~~~~~l~--~L~~L~Ls~n~l~~~~~~~---l~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  431 (956)
                      +..+..++  +|+.|++++|.+.+.+|..   +.  .+++|+.|++++|+++ .+|...+..+++|+.|+|++|.++...
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip  713 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIP  713 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCC
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccC
Confidence            33355554  4999999999998766532   22  3458999999999998 456666778999999999999887333


Q ss_pred             cCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhh-hccCCcceEecccccccccCCCCCCC
Q 046848          432 SHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFW-NQTYNLSFFNLSNNQIKGKLPNLSSR  510 (956)
Q Consensus       432 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~  510 (956)
                      ...+....                 ..+.++++|+.|++++|+++ .+|..+. ..+++|+.|+|++|++++ +|..+..
T Consensus       714 ~~~~~~~~-----------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~  774 (876)
T 4ecn_A          714 ENSLKPKD-----------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN  774 (876)
T ss_dssp             TTSSSCTT-----------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG
T ss_pred             hHHhcccc-----------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhc
Confidence            22221111                 11223456777777777776 4555443 233344444444444332 2211000


Q ss_pred             CcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEc
Q 046848          511 FHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNL  590 (956)
Q Consensus       511 ~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  590 (956)
                                                                   .  ++|+.|++++|.                  ++
T Consensus       775 ---------------------------------------------L--~~L~~L~Ls~N~------------------~l  789 (876)
T 4ecn_A          775 ---------------------------------------------S--SQLKAFGIRHQR------------------DA  789 (876)
T ss_dssp             ---------------------------------------------C--TTCCEEECCCCB------------------CT
T ss_pred             ---------------------------------------------C--CCCCEEECCCCC------------------Cc
Confidence                                                         0  334444443332                  22


Q ss_pred             CCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCccc
Q 046848          591 ANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFN  669 (956)
Q Consensus       591 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~  669 (956)
                      ++|++.+.+|..+.++++|+.|+|++|++ +.+|..+.  ++|+.|||++|++...-+..+. ....+..+.|.+|+..
T Consensus       790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~-~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVC-PYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGH-HHHHTTCCEEECCTTS
T ss_pred             ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcc-ccccchheeecCCCcc
Confidence            34666666676676777777777777777 46666554  4677777777776622222222 2334555666666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.8e-47  Score=450.82  Aligned_cols=421  Identities=21%  Similarity=0.224  Sum_probs=287.3

Q ss_pred             eEEecccccccCCCcccCCCCCCcEEECCCCcCcc--ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCC--
Q 046848          270 LINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE--IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSL--  345 (956)
Q Consensus       270 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L--  345 (956)
                      +|++++|.+++..+..++.+++|++|++++|.+++  +|..+.++++|++|++++|.+++..+..+..+.      +|  
T Consensus       104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~  177 (570)
T 2z63_A          104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH------QMPL  177 (570)
T ss_dssp             EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH------TCTT
T ss_pred             cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh------ccch
Confidence            33333333333333357788999999999999987  688999999999999999999988888787776      67  


Q ss_pred             --CEEEccCCcCcccCCCCCCCCCCCEEEeecccccc-ccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEc
Q 046848          346 --AWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNG-TINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYL  422 (956)
Q Consensus       346 --~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  422 (956)
                        +.+++++|.+++..+......+|++|++++|.... .++..+..++.++.+.+....+...         .+++  .+
T Consensus       178 ~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~---------~~l~--~~  246 (570)
T 2z63_A          178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE---------GNLE--KF  246 (570)
T ss_dssp             CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC---------SSCE--EC
T ss_pred             hhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCc---------hhhh--hc
Confidence              78888888888777663333478888888875432 3445566666666655543322210         0111  00


Q ss_pred             CCCcccccccCCcCCCC--CcceEEcCCC-CCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEeccccc
Q 046848          423 ADNSLTLEFSHDWIPPF--QLSQVNLGSC-KIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQ  499 (956)
Q Consensus       423 s~n~l~~~~~~~~~~~~--~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~  499 (956)
                      ..        ..+..+.  .++.+++.++ .+.+..+..+..++                         +|++|++++|.
T Consensus       247 ~~--------~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~-------------------------~L~~L~l~~~~  293 (570)
T 2z63_A          247 DK--------SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT-------------------------NVSSFSLVSVT  293 (570)
T ss_dssp             CT--------TTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT-------------------------TCSEEEEESCE
T ss_pred             ch--------hhhccccccchhhhhhhcchhhhhhchhhhcCcC-------------------------cccEEEecCcc
Confidence            00        1111111  1233333333 23333344444444                         44444444444


Q ss_pred             ccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccc
Q 046848          500 IKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCW  579 (956)
Q Consensus       500 l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~  579 (956)
                      ++ .+|..+..                                                .+|+.|++++|.+. .+|.  
T Consensus       294 l~-~l~~~~~~------------------------------------------------~~L~~L~l~~n~~~-~l~~--  321 (570)
T 2z63_A          294 IE-RVKDFSYN------------------------------------------------FGWQHLELVNCKFG-QFPT--  321 (570)
T ss_dssp             EC-SCCBCCSC------------------------------------------------CCCSEEEEESCBCS-SCCB--
T ss_pred             ch-hhhhhhcc------------------------------------------------CCccEEeeccCccc-ccCc--
Confidence            43 12211100                                                13555555555555 3343  


Q ss_pred             cCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeC--CccccCCCCCcEEecCCccccccCChhHhhcCcc
Q 046848          580 SQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGEL--PSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVN  657 (956)
Q Consensus       580 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~  657 (956)
                      ..+++|+.|++++|.+.+..+.  ..+++|++|++++|++++..  |..+..+++|++|++++|.+. .+|..+. .+++
T Consensus       322 ~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~-~l~~  397 (570)
T 2z63_A          322 LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL-GLEQ  397 (570)
T ss_dssp             CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEE-TCTT
T ss_pred             ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-ccccccc-ccCC
Confidence            3556677777777776655544  56677777777777776543  566777777777777777777 4444443 6778


Q ss_pred             CcEEEccCCcccccCC-ccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccc
Q 046848          658 LVVLSLKSNKFNGSIP-LQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYF  736 (956)
Q Consensus       658 L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  736 (956)
                      |++|++++|++.+..| ..+..+++|++|++++|.+++..|..+..+++|                              
T Consensus       398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------------------  447 (570)
T 2z63_A          398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL------------------------------  447 (570)
T ss_dssp             CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC------------------------------
T ss_pred             CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC------------------------------
Confidence            8888888888776655 457788888888888888887777777666655                              


Q ss_pred             cceeEEecCccceecccccceeEEEcCCCCCC-CCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCcc
Q 046848          737 DKAVLTWKGSQYEYQSTLGLVKILDLSSNKLG-GEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQF  815 (956)
Q Consensus       737 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  815 (956)
                                           ++|+|++|+++ +.+|..+..+++|++|+|++|++++..|..++.+++|++|++++|++
T Consensus       448 ---------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          448 ---------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL  506 (570)
T ss_dssp             ---------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ---------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence                                 78888888887 57888899999999999999999998899999999999999999999


Q ss_pred             CcCCcccccCCCCCCeEECcCCcceecCCCCC
Q 046848          816 FGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGT  847 (956)
Q Consensus       816 ~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~  847 (956)
                      ++.+|..+..+++|+.|++++|+++|.+|...
T Consensus       507 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             CCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            99999999999999999999999999998753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-45  Score=437.32  Aligned_cols=497  Identities=22%  Similarity=0.224  Sum_probs=312.3

Q ss_pred             cCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcEE
Q 046848          113 QHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYL  192 (956)
Q Consensus       113 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L  192 (956)
                      +++++||+++|.+++. .+..+.++++|++|+|++|++++..|..|+++++|++|++++|.+ ....+..++++++|++|
T Consensus        28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC-CccCHhhhcCccccccc
Confidence            4789999999999854 456788999999999999999877788899999999999999986 33444678888888888


Q ss_pred             ecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccceEE
Q 046848          193 DLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELIN  272 (956)
Q Consensus       193 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~  272 (956)
                      ++++|.+++++..  .++++++|++|++++|.+.+.                          .+|..+.++++ | +.|+
T Consensus       106 ~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~--------------------------~lp~~~~~l~~-L-~~L~  155 (570)
T 2z63_A          106 VAVETNLASLENF--PIGHLKTLKELNVAHNLIQSF--------------------------KLPEYFSNLTN-L-EHLD  155 (570)
T ss_dssp             ECTTSCCCCSTTC--SCTTCTTCCEEECCSSCCCCC--------------------------CCCGGGGGCTT-C-CEEE
T ss_pred             cccccccccCCCc--cccccccccEEecCCCcccee--------------------------cChhhhcccCC-C-CEEe
Confidence            8888888775431  255555555555555554431                          23444444444 4 5555


Q ss_pred             ecccccccCCCcccCCCCCC----cEEECCCCcCcccc-ccccCCCCCCEEEccCCCCCC-cchHHHhhcCCCCccCCCC
Q 046848          273 LGSNQLQGSIPEAFGHMPSL----NTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTLRG-DLSEIIQNLSDGCTKTSLA  346 (956)
Q Consensus       273 Ls~n~l~~~~p~~l~~l~~L----~~L~Ls~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~~~~~~~L~  346 (956)
                      +++|.+++..+..++.+++|    +.|++++|.++.++ ..+.. .+|+.|++++|.... .++..+..+.      .++
T Consensus       156 l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~------~l~  228 (570)
T 2z63_A          156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLA------GLE  228 (570)
T ss_dssp             CTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTT------TCE
T ss_pred             CcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc-CcceeEecccccccccchhhhhcCcc------ccc
Confidence            55555555555555555555    66777777776643 33333 367777777664432 2444555554      555


Q ss_pred             EEEccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCC--CCCEEECcCc-cCccccCHHhhhCCCCCCEEEcC
Q 046848          347 WLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLV--KLESLFLHNN-SLRGVISEAFLSNLSNLTILYLA  423 (956)
Q Consensus       347 ~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~Ls  423 (956)
                      .+.+....+...       ..++.  +..        ..+..++  .++.++++++ .+.+..+. .+..+++|++|+++
T Consensus       229 ~~~l~~~~~~~~-------~~l~~--~~~--------~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~~l~~L~~L~l~  290 (570)
T 2z63_A          229 VHRLVLGEFRNE-------GNLEK--FDK--------SALEGLCNLTIEEFRLAYLDYYLDDIID-LFNCLTNVSSFSLV  290 (570)
T ss_dssp             EEEEEEEECCCC-------SSCEE--CCT--------TTTGGGGGSEEEEEEEEETTEEESCSTT-TTGGGTTCSEEEEE
T ss_pred             eeeeccccccCc-------hhhhh--cch--------hhhccccccchhhhhhhcchhhhhhchh-hhcCcCcccEEEec
Confidence            544433222110       01110  000        0111111  1233444444 33333333 23444444444444


Q ss_pred             CCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEeccccccccc
Q 046848          424 DNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGK  503 (956)
Q Consensus       424 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  503 (956)
                      +|.++                         .+|.++..+ +|++|++++|.+. .+|..   .+                
T Consensus       291 ~~~l~-------------------------~l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l----------------  324 (570)
T 2z63_A          291 SVTIE-------------------------RVKDFSYNF-GWQHLELVNCKFG-QFPTL---KL----------------  324 (570)
T ss_dssp             SCEEC-------------------------SCCBCCSCC-CCSEEEEESCBCS-SCCBC---BC----------------
T ss_pred             Cccch-------------------------hhhhhhccC-CccEEeeccCccc-ccCcc---cc----------------
Confidence            44433                         123333333 4555555555444 22221   12                


Q ss_pred             CCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCC
Q 046848          504 LPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFD  583 (956)
Q Consensus       504 ~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~  583 (956)
                                                                             ++|+.|++++|.+.+..+.  ..++
T Consensus       325 -------------------------------------------------------~~L~~L~l~~n~~~~~~~~--~~~~  347 (570)
T 2z63_A          325 -------------------------------------------------------KSLKRLTFTSNKGGNAFSE--VDLP  347 (570)
T ss_dssp             -------------------------------------------------------SSCCEEEEESCBSCCBCCC--CBCT
T ss_pred             -------------------------------------------------------cccCEEeCcCCcccccccc--ccCC
Confidence                                                                   2344444444444433332  4455


Q ss_pred             CCCEEEcCCCcccccC--CCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEE
Q 046848          584 SLAILNLANNSFFGKI--PDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVL  661 (956)
Q Consensus       584 ~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L  661 (956)
                      +|++|++++|++++..  |..+..+++|++|++++|++++..+. +..+++|+.|++++|.+.+..|...+..+++|++|
T Consensus       348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  426 (570)
T 2z63_A          348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  426 (570)
T ss_dssp             TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred             CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence            6666666666665433  45566677777777777777754444 77777777777777777755553334467788888


Q ss_pred             EccCCcccccCCccccCCCCcCEEeccCCcCC-CCcChhccccccCcccccCccccccccccccccccccccccccccee
Q 046848          662 SLKSNKFNGSIPLQLCHLANVQILDLSSNNIS-GIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAV  740 (956)
Q Consensus       662 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  740 (956)
                      ++++|++.+..|..+..+++|+.|++++|.++ +.+|..+..+++|                                  
T Consensus       427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L----------------------------------  472 (570)
T 2z63_A          427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL----------------------------------  472 (570)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC----------------------------------
T ss_pred             eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC----------------------------------
Confidence            88888888777778888888888888888887 5677666666555                                  


Q ss_pred             EEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCc
Q 046848          741 LTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIP  820 (956)
Q Consensus       741 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  820 (956)
                                       ++|+|++|++++..|..+..+++|+.|+|++|++++..|..++++++|+.|++++|++++..|
T Consensus       473 -----------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          473 -----------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             -----------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             -----------------CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence                             788888888888888889999999999999999998888889999999999999999998876


Q ss_pred             c
Q 046848          821 S  821 (956)
Q Consensus       821 ~  821 (956)
                      .
T Consensus       536 ~  536 (570)
T 2z63_A          536 R  536 (570)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.9e-45  Score=435.46  Aligned_cols=497  Identities=23%  Similarity=0.261  Sum_probs=313.9

Q ss_pred             CccccceeecCCCCcEEEEECCCCCCCCCCCCccccccccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCC
Q 046848           70 CCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTE  149 (956)
Q Consensus        70 ~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~  149 (956)
                      .|.|.|+ |+...                ..++ .+|+.+.  ++|++|+|++|.+++. .|..++++++|++|++++|+
T Consensus         3 ~C~~~~~-c~~~~----------------~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~   61 (549)
T 2z81_A            3 SCDASGV-CDGRS----------------RSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSR   61 (549)
T ss_dssp             EECTTSE-EECTT----------------SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSC
T ss_pred             cCCCCce-EECCC----------------Cccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCC
Confidence            5999998 86432                1222 3555443  7899999999999865 57789999999999999999


Q ss_pred             CCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCC
Q 046848          150 FAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTI  229 (956)
Q Consensus       150 l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  229 (956)
                      +++..|..|+++++|++|++++|.+ ....+..++++++|++|++++|.+++.+. +..++++                 
T Consensus        62 i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l-----------------  122 (549)
T 2z81_A           62 INTIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGV-TSLFPNL-----------------  122 (549)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCC-CSCCHHHHTTCTTCCEEECTTCCCSSSCS-SCSCTTC-----------------
T ss_pred             cCccChhhccccccCCEEECCCCcc-CccCHHHhccCCCCcEEECCCCcccccch-hhhhhcc-----------------
Confidence            9988888999999999999999987 33344446777777777777776654310 1122223                 


Q ss_pred             CCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCcc-cccc
Q 046848          230 PSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE-IPKS  308 (956)
Q Consensus       230 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-ip~~  308 (956)
                                ++|++|++++|.+.+.+|                         +..+..+++|++|++++|.+++ +|..
T Consensus       123 ----------~~L~~L~L~~n~~~~~~~-------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~  167 (549)
T 2z81_A          123 ----------TNLQTLRIGNVETFSEIR-------------------------RIDFAGLTSLNELEIKALSLRNYQSQS  167 (549)
T ss_dssp             ----------TTCCEEEEEESSSCCEEC-------------------------TTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             ----------CCccEEECCCCccccccC-------------------------HhhhhcccccCeeeccCCcccccChhh
Confidence                      333333333333222221                         2344555555555555555555 4555


Q ss_pred             ccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccC----CCCCCCCCCCEEEeeccccccccch
Q 046848          309 LGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSL----PNFGGFSSLKRLSIANNRLNGTINK  384 (956)
Q Consensus       309 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~  384 (956)
                      +..+++|++|++++|.+.......+..++      +|++|++++|.+++..    +....+++|+.|++++|.+++..+.
T Consensus       168 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  241 (549)
T 2z81_A          168 LKSIRDIHHLTLHLSESAFLLEIFADILS------SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN  241 (549)
T ss_dssp             TTTCSEEEEEEEECSBSTTHHHHHHHSTT------TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred             hhccccCceEecccCcccccchhhHhhcc------cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence            55556666666666555432222223344      6666666666665531    1234567788888888877665443


Q ss_pred             h----hcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhh
Q 046848          385 S----VGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLR  460 (956)
Q Consensus       385 ~----l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  460 (956)
                      .    +..+++|+.+++++|.+.+....      +.                                     .....+.
T Consensus       242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~------~~-------------------------------------~~~~~~~  278 (549)
T 2z81_A          242 ELLKLLRYILELSEVEFDDCTLNGLGDF------NP-------------------------------------SESDVVS  278 (549)
T ss_dssp             HHHGGGGGCTTCCEEEEESCEEECCSCC------CC-------------------------------------CTTTCCC
T ss_pred             HHHHHhhhhccccccccccccccccccc------cc-------------------------------------cchhhhh
Confidence            3    34455666666666655543210      00                                     0001122


Q ss_pred             cccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceee
Q 046848          461 NQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLN  540 (956)
Q Consensus       461 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~  540 (956)
                      .+++++.|++.++.+......   .   .+     .                                            
T Consensus       279 ~l~~L~~L~l~~~~i~~~~~~---~---~l-----~--------------------------------------------  303 (549)
T 2z81_A          279 ELGKVETVTIRRLHIPQFYLF---Y---DL-----S--------------------------------------------  303 (549)
T ss_dssp             CCTTCCEEEEESCBCSCGGGS---C---CC-----C--------------------------------------------
T ss_pred             hhcccccccccccccchhhhc---c---cc-----h--------------------------------------------
Confidence            344555566666554321000   0   00     0                                            


Q ss_pred             CCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccc-cCCCCCCEEEcCCCcccccCC---CCcCCCCCcCEEEccC
Q 046848          541 LSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCW-SQFDSLAILNLANNSFFGKIP---DSIGFLKNLQSLSLYN  616 (956)
Q Consensus       541 l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~  616 (956)
                                 .... ...+|+.|++++|.++ .+|..+ ..+++|++|++++|++.+.+|   ..++.+++|++|++++
T Consensus       304 -----------~~~~-~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~  370 (549)
T 2z81_A          304 -----------TVYS-LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ  370 (549)
T ss_dssp             -----------HHHH-HSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTT
T ss_pred             -----------hhhh-hcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccC
Confidence                       0000 0045666666666665 455444 457777777777777776553   3466677777777777


Q ss_pred             ceeeeeCC--ccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCC
Q 046848          617 NRLTGELP--SFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISG  694 (956)
Q Consensus       617 N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  694 (956)
                      |++++..+  ..+..+++|++|++++|+++ .+|..+. .+++|++|++++|+++ .+|..+  .++|++|++++|++++
T Consensus       371 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~  445 (549)
T 2z81_A          371 NHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ-WPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDS  445 (549)
T ss_dssp             SCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC-CCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSC
T ss_pred             CcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc-ccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhh
Confidence            77775432  45777777888888888777 6777665 5777888888888876 344333  2578888888888876


Q ss_pred             CcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchh
Q 046848          695 IIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEE  774 (956)
Q Consensus       695 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  774 (956)
                      .+    ..++.                                                   |++|||++|+++ .+|. 
T Consensus       446 ~~----~~l~~---------------------------------------------------L~~L~Ls~N~l~-~ip~-  468 (549)
T 2z81_A          446 FS----LFLPR---------------------------------------------------LQELYISRNKLK-TLPD-  468 (549)
T ss_dssp             CC----CCCTT---------------------------------------------------CCEEECCSSCCS-SCCC-
T ss_pred             hc----ccCCh---------------------------------------------------hcEEECCCCccC-cCCC-
Confidence            43    23333                                                   388999999998 6665 


Q ss_pred             hhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCc
Q 046848          775 IMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIP  820 (956)
Q Consensus       775 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  820 (956)
                      ...+++|++|+|++|++++.+|..++.+++|+.|++++|++++..|
T Consensus       469 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          469 ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            4678999999999999999888889999999999999999998877

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=9.8e-46  Score=437.86  Aligned_cols=485  Identities=21%  Similarity=0.229  Sum_probs=324.5

Q ss_pred             EEecccccccCCCcccCCCCCCcEEECCCCcCccc-cccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEE
Q 046848          271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREI-PKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLF  349 (956)
Q Consensus       271 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~  349 (956)
                      .+.+++.++ .+|..+.  ++|++|++++|.++++ |..|.++++|++|++++|.+++..|..+..++      +|++|+
T Consensus        10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~------~L~~L~   80 (549)
T 2z81_A           10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG------SLEHLD   80 (549)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT------TCCEEE
T ss_pred             EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc------cCCEEE
Confidence            455555555 3444332  5677777777777663 45666777777777777776666666666665      666666


Q ss_pred             ccCCcCcccCCC-CCCCCCCCEEEeecccccc-ccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcc
Q 046848          350 LDSNEITGSLPN-FGGFSSLKRLSIANNRLNG-TINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSL  427 (956)
Q Consensus       350 Ls~n~l~~~~~~-~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  427 (956)
                      +++|.+++..+. ++.+++|++|++++|.+++ ..|..++.+++|++|++++|.+.+.++...+..+++|++|++++|.+
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            666666655554 6666666666666666654 23455666666666666666643344333356666666666666666


Q ss_pred             cccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCc--cchhhhccCCcceEecccccccccCC
Q 046848          428 TLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTV--PNWFWNQTYNLSFFNLSNNQIKGKLP  505 (956)
Q Consensus       428 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~p  505 (956)
                      ++..+..+..+.+|++|++++|.+.......+..+++|++|++++|++++..  +..+....++|+.|++++|.+++..+
T Consensus       161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  240 (549)
T 2z81_A          161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF  240 (549)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred             cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence            6655555555666666666666554322222334566666666666655432  22223334456666666655554322


Q ss_pred             CCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchh-----hhccCCceeEEECCCCCCCCC-----C
Q 046848          506 NLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFL-----CSITGHKLDYIDLSNNLLSGR-----L  575 (956)
Q Consensus       506 ~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~-----~~~~~~~L~~L~Ls~n~l~~~-----~  575 (956)
                      ..+..                  ......+++.+++++|.+.+.....     ......+++.|+++++.+...     +
T Consensus       241 ~~l~~------------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l  302 (549)
T 2z81_A          241 NELLK------------------LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL  302 (549)
T ss_dssp             HHHHG------------------GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCC
T ss_pred             HHHHH------------------Hhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccc
Confidence            11100                  0011234445555555444421100     000116788888888876532     2


Q ss_pred             CccccCCCCCCEEEcCCCcccccCCCCc-CCCCCcCEEEccCceeeeeCC---ccccCCCCCcEEecCCccccccCCh--
Q 046848          576 PDCWSQFDSLAILNLANNSFFGKIPDSI-GFLKNLQSLSLYNNRLTGELP---SFFTNGSQLTLMDLGKNGLSGEIPT--  649 (956)
Q Consensus       576 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~ip~--  649 (956)
                      +..+...++|+.|++++|++. .+|..+ ..+++|++|++++|++++.+|   ..++.+++|++|++++|+++ .+|.  
T Consensus       303 ~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~  380 (549)
T 2z81_A          303 STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTG  380 (549)
T ss_dssp             CHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHH
T ss_pred             hhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc-ccccch
Confidence            223344678999999999987 667665 579999999999999998764   34788899999999999998 4543  


Q ss_pred             hHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccccccccc
Q 046848          650 WIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSL  729 (956)
Q Consensus       650 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~  729 (956)
                      ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+.                            
T Consensus       381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~----------------------------  430 (549)
T 2z81_A          381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIP----------------------------  430 (549)
T ss_dssp             HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSC----------------------------
T ss_pred             hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhc----------------------------
Confidence            33447999999999999998 688888999999999999999874 232221                            


Q ss_pred             ccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEE
Q 046848          730 KTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLD  809 (956)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~  809 (956)
                                               +.|++|||++|++++.+    ..+++|++|+|++|+++ .+|+ .+.+++|++||
T Consensus       431 -------------------------~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~  479 (549)
T 2z81_A          431 -------------------------QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMK  479 (549)
T ss_dssp             -------------------------TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEE
T ss_pred             -------------------------CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEe
Confidence                                     13489999999999754    57899999999999999 6787 57899999999


Q ss_pred             CCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848          810 LSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       810 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  845 (956)
                      |++|++++.+|..+..+++|++|++++|++.|.+|.
T Consensus       480 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             CCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             cCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            999999999999999999999999999999999984

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.7e-44  Score=431.90  Aligned_cols=517  Identities=22%  Similarity=0.184  Sum_probs=334.1

Q ss_pred             cCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcEE
Q 046848          113 QHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYL  192 (956)
Q Consensus       113 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L  192 (956)
                      +.+++|||++|.|+.. .|..|.++++|++|+|++|++++..|.+|.+|++|++|+|++|++ ....+..|.++++|++|
T Consensus        52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCCEE
Confidence            4789999999999953 346799999999999999999977788899999999999999987 33444668899999999


Q ss_pred             ecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCC-CCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccceE
Q 046848          193 DLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPT-IPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELI  271 (956)
Q Consensus       193 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L  271 (956)
                      ++++|.+++++.  ..++++++|++|++++|.+.+. .|  ..+... ++|++|++++|++.+..+..+..+.. + +  
T Consensus       130 ~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~N~l~~~~~~--~~~~~l-~~L~~L~L~~N~l~~~~~~~l~~L~~-l-~--  200 (635)
T 4g8a_A          130 VAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLP--EYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQ-M-P--  200 (635)
T ss_dssp             ECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCCC--GGGGGC-TTCCEEECCSSCCCEECGGGGHHHHT-C-T--
T ss_pred             ECCCCcCCCCCh--hhhhcCcccCeeccccCccccCCCc--hhhccc-hhhhhhcccCccccccccccccchhh-h-h--
Confidence            999998887642  3467777777777777776543 22  222222 66666666666665544444443332 1 0  


Q ss_pred             EecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcc-hHHHhhcCCCCccCCCCEEEc
Q 046848          272 NLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDL-SEIIQNLSDGCTKTSLAWLFL  350 (956)
Q Consensus       272 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~~~~~~~L~~L~L  350 (956)
                                        .....++++.|.++.++........++.+++.+|...... +..+..+.      .++...+
T Consensus       201 ------------------~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~------~l~~~~l  256 (635)
T 4g8a_A          201 ------------------LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA------GLEVHRL  256 (635)
T ss_dssp             ------------------TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTT------TCEEEEE
T ss_pred             ------------------hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCc------ccccccc
Confidence                              1123455666666665544444455566666666544322 23344443      4444444


Q ss_pred             cCCcCccc-------CCCCCCCCCCCEEEeecccccc---ccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEE
Q 046848          351 DSNEITGS-------LPNFGGFSSLKRLSIANNRLNG---TINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTIL  420 (956)
Q Consensus       351 s~n~l~~~-------~~~~~~l~~L~~L~Ls~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  420 (956)
                      ..+.....       ...+..+..+...++..+....   .....+                         ..+.+++.+
T Consensus       257 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~-------------------------~~~~~l~~l  311 (635)
T 4g8a_A          257 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF-------------------------NCLTNVSSF  311 (635)
T ss_dssp             EEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTT-------------------------GGGTTCSEE
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhhcccccchhhhh-------------------------hhhcccccc
Confidence            32222111       0113333444444444332221   111222                         333444444


Q ss_pred             EcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccc
Q 046848          421 YLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQI  500 (956)
Q Consensus       421 ~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l  500 (956)
                      ++.++.+....                          .+.....++.|++.+|.+.+..+.    ..             
T Consensus       312 ~~~~~~~~~~~--------------------------~~~~~~~L~~L~l~~~~~~~~~~~----~l-------------  348 (635)
T 4g8a_A          312 SLVSVTIERVK--------------------------DFSYNFGWQHLELVNCKFGQFPTL----KL-------------  348 (635)
T ss_dssp             EEESCEEEECG--------------------------GGGSCCCCSEEEEESCEESSCCCC----BC-------------
T ss_pred             ccccccccccc--------------------------ccccchhhhhhhcccccccCcCcc----cc-------------
Confidence            44444333111                          011112233333333322211110    01             


Q ss_pred             cccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCcccc
Q 046848          501 KGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWS  580 (956)
Q Consensus       501 ~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~  580 (956)
                                                                                ..|+.++++.|.+...  ....
T Consensus       349 ----------------------------------------------------------~~L~~l~l~~n~~~~~--~~~~  368 (635)
T 4g8a_A          349 ----------------------------------------------------------KSLKRLTFTSNKGGNA--FSEV  368 (635)
T ss_dssp             ----------------------------------------------------------TTCCEEEEESCCSCCB--CCCC
T ss_pred             ----------------------------------------------------------hhhhhcccccccCCCC--cccc
Confidence                                                                      2333444444433321  1223


Q ss_pred             CCCCCCEEEcCCCccc--ccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccC
Q 046848          581 QFDSLAILNLANNSFF--GKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNL  658 (956)
Q Consensus       581 ~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  658 (956)
                      .+++|+.|++++|.+.  +..+..+..+.+|+++++..|.+.. .+..+..+++|+.+++++|+.....+...+..++++
T Consensus       369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l  447 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  447 (635)
T ss_dssp             BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred             cccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccc
Confidence            4556666666666554  2344455566677777777777663 344566777777777777777656665555578888


Q ss_pred             cEEEccCCcccccCCccccCCCCcCEEeccCCcCC-CCcChhccccccCcccccCccccccccccccccccccccccccc
Q 046848          659 VVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS-GIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFD  737 (956)
Q Consensus       659 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  737 (956)
                      +.++++.|.+.+..+..+..+++|+.|++++|++. +..|..|..+++|                               
T Consensus       448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L-------------------------------  496 (635)
T 4g8a_A          448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------------------------------  496 (635)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-------------------------------
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc-------------------------------
Confidence            88888888888888888888889999999988754 3456666665555                               


Q ss_pred             ceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCc
Q 046848          738 KAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG  817 (956)
Q Consensus       738 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  817 (956)
                                          ++|||++|+|++.+|..|.++++|++|+|++|+|++..|..|+.+++|++|||++|++++
T Consensus       497 --------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~  556 (635)
T 4g8a_A          497 --------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  556 (635)
T ss_dssp             --------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred             --------------------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence                                889999999998899999999999999999999999889999999999999999999999


Q ss_pred             CCcccccCC-CCCCeEECcCCcceecCC
Q 046848          818 SIPSSLSQL-SRLSVMDLSYNNLSGKIP  844 (956)
Q Consensus       818 ~ip~~l~~l-~~L~~L~ls~N~l~g~ip  844 (956)
                      .+|+.+..+ ++|++|++++|+|+|.|.
T Consensus       557 ~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          557 SKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             CCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            999999998 689999999999999875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.9e-45  Score=429.40  Aligned_cols=457  Identities=20%  Similarity=0.214  Sum_probs=315.5

Q ss_pred             ceEEecccccccCCCcccCCCCCCcEEECCCCcCcccc-ccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCE
Q 046848          269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAW  347 (956)
Q Consensus       269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~  347 (956)
                      +.+++++|.++. +|..+.  ++|++|++++|.+++++ ..|.++++|++|+|++|++++..|..+..++      +|++
T Consensus         3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~   73 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ------ELEY   73 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT------TCCE
T ss_pred             ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhccc------CCCE
Confidence            567777777773 555444  67777777777777754 5677777777777777777776677777766      7777


Q ss_pred             EEccCCcCcccCCCCCCCCCCCEEEeecccccc-ccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCC--CEEEcCC
Q 046848          348 LFLDSNEITGSLPNFGGFSSLKRLSIANNRLNG-TINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNL--TILYLAD  424 (956)
Q Consensus       348 L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~Ls~  424 (956)
                      |++++|.+++. |.. .+++|++|++++|.+++ .+|..++.+++|++|++++|.+++.    .+..+++|  ++|++++
T Consensus        74 L~Ls~N~l~~l-p~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~  147 (520)
T 2z7x_B           74 LDLSHNKLVKI-SCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVL  147 (520)
T ss_dssp             EECCSSCCCEE-ECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEE
T ss_pred             EecCCCceeec-Ccc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEeec
Confidence            77777777643 323 66777777777777765 3566677777777777777766652    24455555  6666666


Q ss_pred             CcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhccc-ceeEEEeeCCCCCCCccchhhhccCCcceEeccccc----
Q 046848          425 NSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQN-QILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQ----  499 (956)
Q Consensus       425 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~----  499 (956)
                      |.+.+                      .+..|..+..+. +...+++++|.+.+.++......+++|+.+++++|.    
T Consensus       148 n~l~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  205 (520)
T 2z7x_B          148 GETYG----------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK  205 (520)
T ss_dssp             CTTTT----------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT
T ss_pred             ccccc----------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc
Confidence            65510                      233333333332 233445555555555554444445555555555554    


Q ss_pred             ---ccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccch-hh-hccCCceeEEECCCCCCCCC
Q 046848          500 ---IKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISF-LC-SITGHKLDYIDLSNNLLSGR  574 (956)
Q Consensus       500 ---l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~-~~-~~~~~~L~~L~Ls~n~l~~~  574 (956)
                         +.+.+|. +..                      ..+++.|++++|.+++.... .. ....++|++|++++|+++|.
T Consensus       206 ~~~~~~~~~~-l~~----------------------l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  262 (520)
T 2z7x_B          206 CSYFLSILAK-LQT----------------------NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ  262 (520)
T ss_dssp             THHHHHHHHG-GGG----------------------CTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC
T ss_pred             cceeecchhh-hcc----------------------ccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc
Confidence               3332221 111                      12333444444433332110 00 00115788888888888888


Q ss_pred             CCccc-----cCCCCCCEEEcCCCcccccCC-CCcCCC---CCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccc
Q 046848          575 LPDCW-----SQFDSLAILNLANNSFFGKIP-DSIGFL---KNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSG  645 (956)
Q Consensus       575 ~p~~~-----~~l~~L~~L~Ls~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  645 (956)
                      +|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|++++
T Consensus       263 ~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~  338 (520)
T 2z7x_B          263 LDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTD  338 (520)
T ss_dssp             CCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCT
T ss_pred             cccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccCh
Confidence            88877     8888888889988888  455 344433   67899999999876432  12678889999999999987


Q ss_pred             cCChhHhhcCccCcEEEccCCcccc--cCCccccCCCCcCEEeccCCcCCCCcChh-ccccccCcccccCcccccccccc
Q 046848          646 EIPTWIGEGLVNLVVLSLKSNKFNG--SIPLQLCHLANVQILDLSSNNISGIIPKC-FNNFTAMTHEKGSNLTLISNYYT  722 (956)
Q Consensus       646 ~ip~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~~~~~~~~~~~~~~~  722 (956)
                      .+|..+. .+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|.. +..++.|                
T Consensus       339 ~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L----------------  401 (520)
T 2z7x_B          339 TVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL----------------  401 (520)
T ss_dssp             TTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC----------------
T ss_pred             hhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC----------------
Confidence            7888776 68999999999999986  56677889999999999999998756643 4444444                


Q ss_pred             cccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCC
Q 046848          723 SLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQL  802 (956)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  802 (956)
                                                         +.|++++|++++.+|..+.  ++|+.|+|++|+++ .+|..+..+
T Consensus       402 -----------------------------------~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l  443 (520)
T 2z7x_B          402 -----------------------------------LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKL  443 (520)
T ss_dssp             -----------------------------------CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGC
T ss_pred             -----------------------------------CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcC
Confidence                                               8899999999988887664  78999999999999 899988999


Q ss_pred             CCCCEEECCCCccCcCCcc-cccCCCCCCeEECcCCcceecCCC
Q 046848          803 KSLDFLDLSRNQFFGSIPS-SLSQLSRLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       803 ~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~L~ls~N~l~g~ip~  845 (956)
                      ++|++|+|++|++++ +|. .+..+++|++|++++|+++|.++.
T Consensus       444 ~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          444 EALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             TTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence            999999999999995 555 489999999999999999998764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.9e-43  Score=415.03  Aligned_cols=449  Identities=18%  Similarity=0.219  Sum_probs=307.7

Q ss_pred             CCccEEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEE
Q 046848          240 TSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLT  319 (956)
Q Consensus       240 ~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~  319 (956)
                      ++|++|++++|.+.+..|..+..+.. | ++|++++|.+++..|+.|.++++|++|++++|+++++|..  .+++|++|+
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~-L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSK-L-RILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD   96 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTT-C-CEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred             ccccEEECCCCcccccChhhcccccc-c-cEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence            56666666666666655556666665 6 7777777777766666777777777777777777776655  667777777


Q ss_pred             ccCCCCCC-cchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCCCC--CEEEeecccc--ccccchhhcCCC-CCC
Q 046848          320 LSYNTLRG-DLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSL--KRLSIANNRL--NGTINKSVGQLV-KLE  393 (956)
Q Consensus       320 Ls~n~l~~-~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~l~~l~-~L~  393 (956)
                      +++|.+++ .+|..++.++      +|++|++++|.+++  ..+..+++|  ++|++++|.+  .+..|..+..+. ...
T Consensus        97 L~~N~l~~~~~p~~~~~l~------~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l  168 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMS------QLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL  168 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCT------TCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEE
T ss_pred             ccCCccccccchhhhccCC------cceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceE
Confidence            77777765 3556666666      66777776666654  234555555  6666666666  555555554443 223


Q ss_pred             EEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCC
Q 046848          394 SLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNS  473 (956)
Q Consensus       394 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  473 (956)
                      .+++++|.+.+.++...+.++++|+.+++++|.......                 .+.+.+| .+..+++|+.|++++|
T Consensus       169 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----------------~~~~~~~-~l~~l~~L~~L~l~~~  230 (520)
T 2z7x_B          169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-----------------YFLSILA-KLQTNPKLSNLTLNNI  230 (520)
T ss_dssp             EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-----------------HHHHHHH-GGGGCTTCCEEEEEEE
T ss_pred             EEEeccCcchhhhhhhhhhcccceeeccccccccccccc-----------------eeecchh-hhccccchhhcccccc
Confidence            455556655555544444455555555555543100000                 0222222 5666777777777777


Q ss_pred             CCCCCccchhhh--ccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccc
Q 046848          474 GISDTVPNWFWN--QTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSIS  551 (956)
Q Consensus       474 ~i~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~  551 (956)
                      .+++..+..+..  ..++|++|++++|+++|.+|..+.....                    ..                
T Consensus       231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~--------------------~~----------------  274 (520)
T 2z7x_B          231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG--------------------TS----------------  274 (520)
T ss_dssp             EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCS--------------------CC----------------
T ss_pred             ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccc--------------------cc----------------
Confidence            766543332221  1236777777777777666654211000                    00                


Q ss_pred             hhhhccCCceeEEECCCCCCCCCCC-ccccCC---CCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccc
Q 046848          552 FLCSITGHKLDYIDLSNNLLSGRLP-DCWSQF---DSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFF  627 (956)
Q Consensus       552 ~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  627 (956)
                            .+.|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|++++.+|..+
T Consensus       275 ------l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~  344 (520)
T 2z7x_B          275 ------LKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC  344 (520)
T ss_dssp             ------CCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred             ------CceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh
Confidence                  16788888888888  455 444444   67889999998876432  12678889999999999998888889


Q ss_pred             cCCCCCcEEecCCccccc--cCChhHhhcCccCcEEEccCCcccccCCcc-ccCCCCcCEEeccCCcCCCCcChhccccc
Q 046848          628 TNGSQLTLMDLGKNGLSG--EIPTWIGEGLVNLVVLSLKSNKFNGSIPLQ-LCHLANVQILDLSSNNISGIIPKCFNNFT  704 (956)
Q Consensus       628 ~~l~~L~~L~Ls~N~l~~--~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  704 (956)
                      ..+++|++|++++|++++  .+|..+. .+++|++|++++|++.+.+|.. +..+++|+.|++++|++++.+|..+.  +
T Consensus       345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~  421 (520)
T 2z7x_B          345 GHLTELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P  421 (520)
T ss_dssp             CCCSSCCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred             ccCCCCCEEEccCCccCccccchHHHh-hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence            999999999999999985  5556665 7999999999999998756654 78889999999999999877765543  2


Q ss_pred             cCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEE
Q 046848          705 AMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIAL  784 (956)
Q Consensus       705 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  784 (956)
                      .                                                   |+.|||++|+++ .+|..+..+++|++|
T Consensus       422 ~---------------------------------------------------L~~L~Ls~N~l~-~ip~~~~~l~~L~~L  449 (520)
T 2z7x_B          422 R---------------------------------------------------IKVLDLHSNKIK-SIPKQVVKLEALQEL  449 (520)
T ss_dssp             T---------------------------------------------------CCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred             c---------------------------------------------------CCEEECCCCccc-ccchhhhcCCCCCEE
Confidence            2                                                   389999999999 888888899999999


Q ss_pred             EcccccccccCCcc-ccCCCCCCEEECCCCccCcCCc
Q 046848          785 NLSRNTLTGQITPK-IGQLKSLDFLDLSRNQFFGSIP  820 (956)
Q Consensus       785 ~Ls~N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~ip  820 (956)
                      +|++|+++ .+|.. +..+++|+.|++++|++++..+
T Consensus       450 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          450 NVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            99999999 56665 9999999999999999998655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.8e-43  Score=428.38  Aligned_cols=354  Identities=20%  Similarity=0.255  Sum_probs=199.0

Q ss_pred             CcCcccCCCCCCCCCCCEEEeecccccc-----------------ccchhhc--CCCCCCEEECcCccCccccCHHhhhC
Q 046848          353 NEITGSLPNFGGFSSLKRLSIANNRLNG-----------------TINKSVG--QLVKLESLFLHNNSLRGVISEAFLSN  413 (956)
Q Consensus       353 n~l~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~  413 (956)
                      |.+++.++.++++++|++|+|++|.+++                 .+|..++  ++++|++|+|++|.+.+.+|. .+.+
T Consensus       435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~  513 (876)
T 4ecn_A          435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYD  513 (876)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGG
T ss_pred             CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHhC
Confidence            4444422225555555555555555554                 2555554  566666666666665555554 2555


Q ss_pred             CCCCCEEEcCCCc-ccc-cccCC-------cCCCCCcceEEcCCCCCCCCCch--hhhcccceeEEEeeCCCCCCCccch
Q 046848          414 LSNLTILYLADNS-LTL-EFSHD-------WIPPFQLSQVNLGSCKIGPRFPK--WLRNQNQILSLDISNSGISDTVPNW  482 (956)
Q Consensus       414 l~~L~~L~Ls~n~-l~~-~~~~~-------~~~~~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~  482 (956)
                      +++|++|+|++|+ +++ ..+..       +..+++|+.|++++|.+. .+|.  .+.++++|+.|++++|+++ .+| .
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~  590 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A  590 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence            6666666666665 554 33332       233447777777777777 6777  7888888888888888887 555 2


Q ss_pred             hhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCcee
Q 046848          483 FWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLD  562 (956)
Q Consensus       483 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~  562 (956)
                      + ..++                                                                       +|+
T Consensus       591 ~-~~L~-----------------------------------------------------------------------~L~  598 (876)
T 4ecn_A          591 F-GTNV-----------------------------------------------------------------------KLT  598 (876)
T ss_dssp             C-CTTS-----------------------------------------------------------------------EES
T ss_pred             h-cCCC-----------------------------------------------------------------------cce
Confidence            2 2233                                                                       344


Q ss_pred             EEECCCCCCCCCCCccccCCCC-CCEEEcCCCcccccCCCCcCCCCC--cCEEEccCceeeeeCCccc---c--CCCCCc
Q 046848          563 YIDLSNNLLSGRLPDCWSQFDS-LAILNLANNSFFGKIPDSIGFLKN--LQSLSLYNNRLTGELPSFF---T--NGSQLT  634 (956)
Q Consensus       563 ~L~Ls~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~~---~--~l~~L~  634 (956)
                      .|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..++.  |+.|++++|++++.+|...   .  .+++|+
T Consensus       599 ~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~  676 (876)
T 4ecn_A          599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS  676 (876)
T ss_dssp             EEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred             EEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence            4444444444 44444444444 555555555544 44444444332  5555555555544333211   1  223555


Q ss_pred             EEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCC--------CCcCEEeccCCcCCCCcChhcc--ccc
Q 046848          635 LMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHL--------ANVQILDLSSNNISGIIPKCFN--NFT  704 (956)
Q Consensus       635 ~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l--------~~L~~L~Ls~N~l~~~~p~~~~--~l~  704 (956)
                      .|+|++|+++ .+|..++..+++|+.|+|++|++. .+|..+...        ++|+.|+|++|+++ .+|..+.  .++
T Consensus       677 ~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~  753 (876)
T 4ecn_A          677 TVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP  753 (876)
T ss_dssp             EEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT
T ss_pred             EEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC
Confidence            5555555555 555555544555555555555555 344333221        25666666666665 4444443  333


Q ss_pred             cCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEE
Q 046848          705 AMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIAL  784 (956)
Q Consensus       705 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  784 (956)
                      +|                                                   +.|+|++|++++ +|..+..+++|+.|
T Consensus       754 ~L---------------------------------------------------~~L~Ls~N~L~~-lp~~l~~L~~L~~L  781 (876)
T 4ecn_A          754 YL---------------------------------------------------SNMDVSYNCFSS-FPTQPLNSSQLKAF  781 (876)
T ss_dssp             TC---------------------------------------------------CEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred             Cc---------------------------------------------------CEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence            33                                                   556666666664 55566666666666


Q ss_pred             Eccc------ccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceec
Q 046848          785 NLSR------NTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK  842 (956)
Q Consensus       785 ~Ls~------N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  842 (956)
                      +|++      |++.+.+|..++.+++|+.|+|++|++ +.+|..+.  ++|+.||+++|++...
T Consensus       782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI  842 (876)
T ss_dssp             ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred             ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence            6654      667777777777777777777777777 56676654  4677777777776543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.5e-44  Score=432.10  Aligned_cols=449  Identities=19%  Similarity=0.250  Sum_probs=336.5

Q ss_pred             ceEEecccccccCCCcccCCCCCCcEEECCCCcCc-------------cccccccCCCCCCEEEccCCCCCCcchHHHhh
Q 046848          269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFR-------------EIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQN  335 (956)
Q Consensus       269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-------------~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~  335 (956)
                      +.|+|+++.+.|.+|+.++++++|++|+|++|.+.             .+|...  +..|+ +++++|.+.+.+|..+..
T Consensus        84 ~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           84 TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             EEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCH
T ss_pred             EEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHH
Confidence            77788888888888888888888888888888652             233322  34566 777777777766654432


Q ss_pred             cCCCCccCCCCEEEccCCcCcccCCCCCCCCCCCEEEe--eccccccccchhhcCCCCCCEEECcCccCccc--------
Q 046848          336 LSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSI--ANNRLNGTINKSVGQLVKLESLFLHNNSLRGV--------  405 (956)
Q Consensus       336 l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L--s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--------  405 (956)
                      +.     ..+..+++....+..     .....++.+.+  ..|.+++ +|..++++++|++|++++|.+++.        
T Consensus       161 ~~-----~~l~~~~l~~~~~~~-----~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  229 (636)
T 4eco_A          161 LI-----KDCINSDPQQKSIKK-----SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN  229 (636)
T ss_dssp             HH-----HHHHHHCTTSCCCCC-----CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred             HH-----HHHhhcCcccccccc-----ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence            11     012222222211110     11112222222  2466666 677777777777777777777763        


Q ss_pred             ---------cCHHhhh--CCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCC-CCC-CCchhhhcc------ccee
Q 046848          406 ---------ISEAFLS--NLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCK-IGP-RFPKWLRNQ------NQIL  466 (956)
Q Consensus       406 ---------~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~  466 (956)
                               +|.. +.  ++++|++|++++|.+.+..+..+..+++|++|++++|+ +++ .+|..+..+      ++|+
T Consensus       230 ~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~  308 (636)
T 4eco_A          230 ENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ  308 (636)
T ss_dssp             TTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC
T ss_pred             cccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC
Confidence                     4443 45  77777777777777777777777777777888888887 776 678877776      8999


Q ss_pred             EEEeeCCCCCCCccc--hhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCC
Q 046848          467 SLDISNSGISDTVPN--WFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKN  544 (956)
Q Consensus       467 ~L~Ls~n~i~~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n  544 (956)
                      +|++++|+++ .+|.  .+ ..+++|++|++++|+++|.+| .+..                                  
T Consensus       309 ~L~L~~n~l~-~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~----------------------------------  351 (636)
T 4eco_A          309 IIYIGYNNLK-TFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGS----------------------------------  351 (636)
T ss_dssp             EEECCSSCCS-SCCCHHHH-TTCTTCCEEECCSCCCEEECC-CCEE----------------------------------
T ss_pred             EEECCCCcCC-ccCchhhh-ccCCCCCEEeCcCCcCccchh-hhCC----------------------------------
Confidence            9999999998 6776  44 446688888888888877666 2111                                  


Q ss_pred             cCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCC-CCEEEcCCCcccccCCCCcCCCC--CcCEEEccCceeee
Q 046848          545 KFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDS-LAILNLANNSFFGKIPDSIGFLK--NLQSLSLYNNRLTG  621 (956)
Q Consensus       545 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~  621 (956)
                                 .  ++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++  +|++|++++|++++
T Consensus       352 -----------l--~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~  416 (636)
T 4eco_A          352 -----------E--IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS  416 (636)
T ss_dssp             -----------E--EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             -----------C--CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence                       0  57888888888888 77888888888 999999999988 7788877655  89999999999998


Q ss_pred             eCCcccc-------CCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccC-C-------CCcCEEe
Q 046848          622 ELPSFFT-------NGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCH-L-------ANVQILD  686 (956)
Q Consensus       622 ~~p~~~~-------~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l-------~~L~~L~  686 (956)
                      .+|..+.       .+++|++|+|++|+++ .+|..++..+++|++|++++|+++ .+|..... .       ++|+.|+
T Consensus       417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~  494 (636)
T 4eco_A          417 VDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSID  494 (636)
T ss_dssp             TTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEE
T ss_pred             cchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEE
Confidence            8888888       7889999999999998 888888867899999999999998 56654332 2       3899999


Q ss_pred             ccCCcCCCCcChhcc--ccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCC
Q 046848          687 LSSNNISGIIPKCFN--NFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSS  764 (956)
Q Consensus       687 Ls~N~l~~~~p~~~~--~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  764 (956)
                      |++|+++ .+|..+.  .+++|                                                   +.|+|++
T Consensus       495 Ls~N~l~-~lp~~~~~~~l~~L---------------------------------------------------~~L~Ls~  522 (636)
T 4eco_A          495 LRFNKLT-KLSDDFRATTLPYL---------------------------------------------------VGIDLSY  522 (636)
T ss_dssp             CCSSCCC-BCCGGGSTTTCTTC---------------------------------------------------CEEECCS
T ss_pred             CcCCcCC-ccChhhhhccCCCc---------------------------------------------------CEEECCC
Confidence            9999998 6676654  55555                                                   8899999


Q ss_pred             CCCCCCCchhhhccccCCEEEc------ccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCc
Q 046848          765 NKLGGEVPEEIMDLAGLIALNL------SRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNN  838 (956)
Q Consensus       765 N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~  838 (956)
                      |++++ +|..+..+++|+.|+|      ++|++.+.+|..++.+++|+.|+|++|++ +.+|..+.  ++|+.||+++|+
T Consensus       523 N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~  598 (636)
T 4eco_A          523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP  598 (636)
T ss_dssp             SCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred             CCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence            99997 8999999999999999      56889999999999999999999999999 68888876  799999999999


Q ss_pred             ceec
Q 046848          839 LSGK  842 (956)
Q Consensus       839 l~g~  842 (956)
                      +.+.
T Consensus       599 l~~~  602 (636)
T 4eco_A          599 NISI  602 (636)
T ss_dssp             TCEE
T ss_pred             Cccc
Confidence            9864

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.1e-42  Score=409.51  Aligned_cols=481  Identities=21%  Similarity=0.232  Sum_probs=298.9

Q ss_pred             cEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCC-CCCCCCCCEE
Q 046848          293 NTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRL  371 (956)
Q Consensus       293 ~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L  371 (956)
                      +++++++|.++++|..+.  ++|++|++++|.+++..+..+..++      +|++|++++|.+++..|. |..+++|++|
T Consensus        34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLS------ELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCT------TCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCC------CccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            444444444444443332  4444444444444444444444444      444444444444444333 4444555555


Q ss_pred             EeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCc--ceEEcCCC
Q 046848          372 SIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQL--SQVNLGSC  449 (956)
Q Consensus       372 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L--~~L~L~~n  449 (956)
                      ++++|.++ .+|..  .+++|++|++++|++++......++++++|++|++++|.++..   .+..+.+|  +.|++++|
T Consensus       106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred             ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence            55555544 23322  4455555555555554432111244555555555555554432   22222233  55555555


Q ss_pred             CC--CCCCchhhhccc-ceeEEEeeCCCCCCCccchhhhccCCcceEeccccccc-----ccCCCCCCCCcCCCCeeecc
Q 046848          450 KI--GPRFPKWLRNQN-QILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-----GKLPNLSSRFHPYRPGIDIS  521 (956)
Q Consensus       450 ~l--~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~p~~~~~~~~l~~~l~ls  521 (956)
                      .+  .+..|..+..+. ....+++++|.+.+.++......+++|+.+++++|+..     +.++. +..           
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~-l~~-----------  247 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE-LTR-----------  247 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH-HHS-----------
T ss_pred             cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH-Hhc-----------
Confidence            55  455555555443 12245666666666666555555666677776666411     11100 000           


Q ss_pred             cceeeecCCCCCCCCceeeCCCCcCccc-----cchhhhccCCceeEEECCCCCCCCCCCccc-----cCCCCCCEEEcC
Q 046848          522 SNQFEGPIPQLPLNASFLNLSKNKFSGS-----ISFLCSITGHKLDYIDLSNNLLSGRLPDCW-----SQFDSLAILNLA  591 (956)
Q Consensus       522 ~n~l~g~~p~~~~~l~~L~l~~n~l~~~-----~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls  591 (956)
                                 ...++.+++.++.+.+.     .+...   .++|++|++++|.++|.+|..+     ..++.|+.++++
T Consensus       248 -----------l~~L~~L~L~~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~  313 (562)
T 3a79_B          248 -----------GPTLLNVTLQHIETTWKCSVKLFQFFW---PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK  313 (562)
T ss_dssp             -----------CSSCEEEEEEEEEECHHHHHHHHHHHT---TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEE
T ss_pred             -----------cCcceEEEecCCcCcHHHHHHHHHhhh---cccccEEEEeccEeeccccchhhhcccccchheehhhcc
Confidence                       12333344433333321     11111   1589999999999999888877     666677777777


Q ss_pred             CCcccccCC-CCcCC---CCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCc
Q 046848          592 NNSFFGKIP-DSIGF---LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNK  667 (956)
Q Consensus       592 ~N~l~~~~p-~~~~~---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~  667 (956)
                      .|.+  .+| ..+..   ..+|++|++++|.+....  ....+++|++|++++|++++.+|..+. ++++|++|++++|+
T Consensus       314 ~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~  388 (562)
T 3a79_B          314 NQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNG  388 (562)
T ss_dssp             ECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSC
T ss_pred             ccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCC
Confidence            7766  344 22221   257999999999886322  126889999999999999988888876 79999999999999


Q ss_pred             ccc--cCCccccCCCCcCEEeccCCcCCCCcCh-hccccccCcccccCcccccccccccccccccccccccccceeEEec
Q 046848          668 FNG--SIPLQLCHLANVQILDLSSNNISGIIPK-CFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWK  744 (956)
Q Consensus       668 l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  744 (956)
                      +++  .+|..+..+++|++|++++|++++.+|. .+..++.|                                      
T Consensus       389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L--------------------------------------  430 (562)
T 3a79_B          389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI--------------------------------------  430 (562)
T ss_dssp             CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC--------------------------------------
T ss_pred             cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC--------------------------------------
Confidence            986  3456789999999999999999985554 35554444                                      


Q ss_pred             CccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCccc-c
Q 046848          745 GSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSS-L  823 (956)
Q Consensus       745 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-l  823 (956)
                                   +.|+|++|++++.+|..+.  ++|+.|+|++|+++ .+|..+..+++|++|+|++|++++ +|.. +
T Consensus       431 -------------~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~  493 (562)
T 3a79_B          431 -------------LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVF  493 (562)
T ss_dssp             -------------CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTST
T ss_pred             -------------CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHH
Confidence                         8999999999988776654  78999999999999 789888899999999999999995 5555 9


Q ss_pred             cCCCCCCeEECcCCcceecCCCCCcCCcc---ccccccCCCCCCCCCCCCCCC
Q 046848          824 SQLSRLSVMDLSYNNLSGKIPSGTQLQSF---STSMYAGNELCGLPLPNKCPD  873 (956)
Q Consensus       824 ~~l~~L~~L~ls~N~l~g~ip~~~~~~~~---~~~~~~~n~l~~~~~~~~c~~  873 (956)
                      ..+++|++|++++|++.|.||....+..+   ....+..+.-++.|....|..
T Consensus       494 ~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~  546 (562)
T 3a79_B          494 DRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG  546 (562)
T ss_dssp             TTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred             hcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence            99999999999999999998753221111   111111122346666677865

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.8e-39  Score=390.16  Aligned_cols=526  Identities=20%  Similarity=0.202  Sum_probs=378.7

Q ss_pred             EEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCcccc-ccccCCCCCCEEEccC
Q 046848          244 VIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLSY  322 (956)
Q Consensus       244 ~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~Ls~  322 (956)
                      ..+.++.+++ .+|..+   +..+ ++|||++|.+++..+.+|.++++|++|+|++|+++++| .+|.++++|++|+|++
T Consensus        35 ~~~c~~~~l~-~vP~~l---p~~~-~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~  109 (635)
T 4g8a_A           35 TYQCMELNFY-KIPDNL---PFST-KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG  109 (635)
T ss_dssp             EEECTTSCCS-SCCSSS---CTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             EEECCCCCcC-ccCCCC---CcCC-CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence            4455555554 456543   2336 88999999999888888999999999999999999875 4688899999999999


Q ss_pred             CCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCC-CCCCCCCCEEEeecccccc-ccchhhcCCCCCCEEECcCc
Q 046848          323 NTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNG-TINKSVGQLVKLESLFLHNN  400 (956)
Q Consensus       323 n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n  400 (956)
                      |++++..+..|..++      +|++|++++|++++..+. |+++++|++|++++|.+++ ..|..++.+++|++|++++|
T Consensus       110 N~l~~l~~~~f~~L~------~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          110 NPIQSLALGAFSGLS------SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             CCCCEECGGGGTTCT------TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CcCCCCCHHHhcCCC------CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            999887778888887      899999999998877665 8888999999999998875 35677888889999999999


Q ss_pred             cCccccCHHhhhCCCC----CCEEEcCCCcccccccCCcCCCCCcceEEcCCCCCCC-CCchhhhcccceeEEEeeCCCC
Q 046848          401 SLRGVISEAFLSNLSN----LTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGP-RFPKWLRNQNQILSLDISNSGI  475 (956)
Q Consensus       401 ~l~~~~~~~~~~~l~~----L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i  475 (956)
                      ++++..+.. +..+.+    ...++++.|.+....+..+. ...++.+++.+|.... ..+..+..+..++...+..+..
T Consensus       184 ~l~~~~~~~-l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~  261 (635)
T 4g8a_A          184 KIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF  261 (635)
T ss_dssp             CCCEECGGG-GHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred             ccccccccc-ccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence            888876654 333332    34677888877655443332 2344556665554432 2233445555555544433222


Q ss_pred             CCCc-----cchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCC--CCCCCCceeeCCCCcCcc
Q 046848          476 SDTV-----PNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIP--QLPLNASFLNLSKNKFSG  548 (956)
Q Consensus       476 ~~~~-----~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p--~~~~~l~~L~l~~n~l~~  548 (956)
                      ....     ..........+...++..+...                     ....+...  ....++..+++.++.+..
T Consensus       262 ~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~---------------------~~~~~~~~~~~~~~~l~~l~~~~~~~~~  320 (635)
T 4g8a_A          262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLD---------------------YYLDGIIDLFNCLTNVSSFSLVSVTIER  320 (635)
T ss_dssp             TTSCCCSCCCTTTTGGGGGSEEEEEEEECCC---------------------SCEEECTTTTGGGTTCSEEEEESCEEEE
T ss_pred             ccccccccccccccccccchhhhhhhhhhhc---------------------ccccchhhhhhhhccccccccccccccc
Confidence            1110     0000111112222222211111                     11111111  113456677777776655


Q ss_pred             ccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceee--eeCCcc
Q 046848          549 SISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT--GELPSF  626 (956)
Q Consensus       549 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~  626 (956)
                      ..+.. ..  ..++.|++++|.+.+..+.   .+..|+.+++..|.+....  ....+++|+.|++++|.+.  +..+..
T Consensus       321 ~~~~~-~~--~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~  392 (635)
T 4g8a_A          321 VKDFS-YN--FGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQS  392 (635)
T ss_dssp             CGGGG-SC--CCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHH
T ss_pred             ccccc-cc--hhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccc
Confidence            43321 11  6789999999988755443   4667889999999876443  3457899999999999885  456677


Q ss_pred             ccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCC-ccccCCCCcCEEeccCCcCCCCcChhcccccc
Q 046848          627 FTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIP-LQLCHLANVQILDLSSNNISGIIPKCFNNFTA  705 (956)
Q Consensus       627 ~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  705 (956)
                      +..+.+|+.++++.|.+. .++..+. .+++|+.++++.|+.....+ ..+..+++++.+++++|.+.+..+..+..++.
T Consensus       393 ~~~~~~L~~L~~~~~~~~-~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~  470 (635)
T 4g8a_A          393 DFGTISLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS  470 (635)
T ss_dssp             HHSCSCCCEEECCSCSEE-EECSCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred             hhhhhhhhhhhccccccc-ccccccc-ccccccchhhhhccccccccccccccccccccccccccccccccccccccchh
Confidence            788899999999999987 4555555 68999999999888776554 45788999999999999999888877776665


Q ss_pred             CcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCC-CCCCchhhhccccCCEE
Q 046848          706 MTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKL-GGEVPEEIMDLAGLIAL  784 (956)
Q Consensus       706 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~~l~~L~~L  784 (956)
                      +                                                   +.|+|++|++ .+.+|..|..+++|++|
T Consensus       471 L---------------------------------------------------~~L~Ls~N~~~~~~~~~~~~~l~~L~~L  499 (635)
T 4g8a_A          471 L---------------------------------------------------EVLKMAGNSFQENFLPDIFTELRNLTFL  499 (635)
T ss_dssp             C---------------------------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             h---------------------------------------------------hhhhhhhcccccccCchhhhhccccCEE
Confidence            5                                                   8999999985 45678899999999999


Q ss_pred             EcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCC-cC-CccccccccCC-C
Q 046848          785 NLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGT-QL-QSFSTSMYAGN-E  861 (956)
Q Consensus       785 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~-~~-~~~~~~~~~~n-~  861 (956)
                      ||++|++++.+|..|+++++|++|+|++|+|++.+|..|..+++|++||+++|++++..|..- .+ ..+....+.+| .
T Consensus       500 ~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~  579 (635)
T 4g8a_A          500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  579 (635)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred             ECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence            999999999999999999999999999999999999999999999999999999999988652 22 34555667788 5


Q ss_pred             CCC
Q 046848          862 LCG  864 (956)
Q Consensus       862 l~~  864 (956)
                      -|.
T Consensus       580 ~C~  582 (635)
T 4g8a_A          580 ACT  582 (635)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            564

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2e-40  Score=392.49  Aligned_cols=446  Identities=19%  Similarity=0.258  Sum_probs=287.7

Q ss_pred             CCccEEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEE
Q 046848          240 TSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLT  319 (956)
Q Consensus       240 ~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~  319 (956)
                      ++|++|++++|.+.+..+..+..++. | ++|++++|.+++..|+.|.++++|++|++++|.++.+|..  .+++|++|+
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~-L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSE-L-RVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLD  127 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTT-C-CEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEE
T ss_pred             CCcCEEECCCCCccccChhhhccCCC-c-cEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEE
Confidence            55666666666666555555666655 6 6677777777666666677777777777777777766655  667777777


Q ss_pred             ccCCCCCCc-chHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCCCC--CEEEeecccc--ccccchhhcCCC--CC
Q 046848          320 LSYNTLRGD-LSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSL--KRLSIANNRL--NGTINKSVGQLV--KL  392 (956)
Q Consensus       320 Ls~n~l~~~-~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~l~~l~--~L  392 (956)
                      +++|.+++. +|..+++++      +|++|++++|.+++.  .+..+++|  ++|++++|.+  ++..|..+..+.  .+
T Consensus       128 Ls~N~l~~l~~p~~~~~l~------~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l  199 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLT------KLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL  199 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCT------TCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE
T ss_pred             CCCCCccccCchHhhcccC------cccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceE
Confidence            777776653 345666666      677777777766542  24444444  7777777766  555555555443  22


Q ss_pred             CEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeC
Q 046848          393 ESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISN  472 (956)
Q Consensus       393 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  472 (956)
                       .+++++|.+.+.++...+..+++|+.+++++|......                   + ......+..+++|+.+++++
T Consensus       200 -~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-------------------l-~~~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          200 -HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR-------------------L-MTFLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             -EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH-------------------H-HHHHHHHHSCSSCEEEEEEE
T ss_pred             -EEEecCccchhhhhhhcccccceEEEecccccccccch-------------------H-HHHHHHHhccCcceEEEecC
Confidence             44556666655554444445555555555555311000                   0 01223455666777777776


Q ss_pred             CCCCCCccchhhh--ccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCcccc
Q 046848          473 SGISDTVPNWFWN--QTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSI  550 (956)
Q Consensus       473 n~i~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~  550 (956)
                      +.+.+.....+..  ...+|++|++++|.++|.+|..+....                    ..++              
T Consensus       259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~--------------------~~~L--------------  304 (562)
T 3a79_B          259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS--------------------ETAL--------------  304 (562)
T ss_dssp             EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCC--------------------SCSC--------------
T ss_pred             CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcc--------------------cccc--------------
Confidence            6665432111111  123677777777777766664421100                    0111              


Q ss_pred             chhhhccCCceeEEECCCCCCCCCCC-ccccC---CCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCcc
Q 046848          551 SFLCSITGHKLDYIDLSNNLLSGRLP-DCWSQ---FDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSF  626 (956)
Q Consensus       551 ~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~---l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  626 (956)
                              +.|+.++++.+.+  .+| ..+..   ..+|+.|++++|.+....  ....+++|++|++++|++++.+|..
T Consensus       305 --------~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~  372 (562)
T 3a79_B          305 --------KSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQG  372 (562)
T ss_dssp             --------CEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred             --------hheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhh
Confidence                    3455555555555  333 22211   246777888777765321  1256778888888888888777888


Q ss_pred             ccCCCCCcEEecCCccccc--cCChhHhhcCccCcEEEccCCcccccCCc-cccCCCCcCEEeccCCcCCCCcChhcccc
Q 046848          627 FTNGSQLTLMDLGKNGLSG--EIPTWIGEGLVNLVVLSLKSNKFNGSIPL-QLCHLANVQILDLSSNNISGIIPKCFNNF  703 (956)
Q Consensus       627 ~~~l~~L~~L~Ls~N~l~~--~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  703 (956)
                      +.++++|++|++++|++++  .+|..+. ++++|++|++++|++++.+|. .+..+++|+.|++++|++++.+|..+.  
T Consensus       373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--  449 (562)
T 3a79_B          373 CSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--  449 (562)
T ss_dssp             CCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--
T ss_pred             hcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--
Confidence            8888888888888888873  2233344 688888888888888875554 477888999999999999876665443  


Q ss_pred             ccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCE
Q 046848          704 TAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIA  783 (956)
Q Consensus       704 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  783 (956)
                      +.                                                   |+.|+|++|+++ .+|..+..+++|++
T Consensus       450 ~~---------------------------------------------------L~~L~L~~N~l~-~ip~~~~~l~~L~~  477 (562)
T 3a79_B          450 PK---------------------------------------------------VKVLDLHNNRIM-SIPKDVTHLQALQE  477 (562)
T ss_dssp             TT---------------------------------------------------CSEEECCSSCCC-CCCTTTTSSCCCSE
T ss_pred             Cc---------------------------------------------------CCEEECCCCcCc-ccChhhcCCCCCCE
Confidence            22                                                   388999999998 78887789999999


Q ss_pred             EEcccccccccCCcc-ccCCCCCCEEECCCCccCcCCc
Q 046848          784 LNLSRNTLTGQITPK-IGQLKSLDFLDLSRNQFFGSIP  820 (956)
Q Consensus       784 L~Ls~N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~ip  820 (956)
                      |+|++|+++ .+|.. ++.+++|+.|++++|++++..|
T Consensus       478 L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          478 LNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             EECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             EECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            999999999 56666 9999999999999999998765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.3e-39  Score=369.51  Aligned_cols=372  Identities=20%  Similarity=0.191  Sum_probs=258.9

Q ss_pred             CCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEE
Q 046848          366 SSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVN  445 (956)
Q Consensus       366 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  445 (956)
                      ++|++|++++|.+++..|..++.+++|++|++++|.+.+.++...+..+++|++|++++|.++...+..+..+.+|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            45666666666666555556666666666666666665444444456666666666666666655555555566666666


Q ss_pred             cCCCCCCCCCchh--hhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccc
Q 046848          446 LGSCKIGPRFPKW--LRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSN  523 (956)
Q Consensus       446 L~~n~l~~~~~~~--l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n  523 (956)
                      +++|.+.+..+..  +..+++|++|++++|.+++..|..+...+++|++|++++|++++..|..+...            
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l------------  177 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF------------  177 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG------------
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc------------
Confidence            6666665544333  66777777777777777776666655556677777777776665444321110            


Q ss_pred             eeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccc--------cCCCCCCEEEcCCCcc
Q 046848          524 QFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCW--------SQFDSLAILNLANNSF  595 (956)
Q Consensus       524 ~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~--------~~l~~L~~L~Ls~N~l  595 (956)
                                                       ...+++.|++++|.+.+..+..+        ..+++|++|++++|++
T Consensus       178 ---------------------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  224 (455)
T 3v47_A          178 ---------------------------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF  224 (455)
T ss_dssp             ---------------------------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC
T ss_pred             ---------------------------------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcc
Confidence                                             01467788888888776444332        2344555566666655


Q ss_pred             cccCCCCcCCC---CCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHh-hcCccCcEEEccCCccccc
Q 046848          596 FGKIPDSIGFL---KNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIG-EGLVNLVVLSLKSNKFNGS  671 (956)
Q Consensus       596 ~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~-~~l~~L~~L~L~~N~l~~~  671 (956)
                      .+..|..+...   ++|+.|++++|.+.+...              ..+.+.+..+..+. ...++|++|++++|++.+.
T Consensus       225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  290 (455)
T 3v47_A          225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL  290 (455)
T ss_dssp             CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred             cccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCcccccc
Confidence            55544444322   455555555554432110              11112111111111 0246899999999999999


Q ss_pred             CCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceec
Q 046848          672 IPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQ  751 (956)
Q Consensus       672 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (956)
                      +|..+..+++|+.|++++|++++..|..|..++.|                                             
T Consensus       291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------------------------------  325 (455)
T 3v47_A          291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL---------------------------------------------  325 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC---------------------------------------------
T ss_pred             chhhcccCCCCCEEECCCCcccccChhHhcCcccC---------------------------------------------
Confidence            99999999999999999999998888888777666                                             


Q ss_pred             ccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCe
Q 046848          752 STLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSV  831 (956)
Q Consensus       752 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  831 (956)
                            ++|+|++|++++..|..+..+++|++|+|++|++++..|..++.+++|++|+|++|++++..+..+..+++|++
T Consensus       326 ------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  399 (455)
T 3v47_A          326 ------LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK  399 (455)
T ss_dssp             ------CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             ------CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence                  89999999999888999999999999999999999999999999999999999999999888888899999999


Q ss_pred             EECcCCcceecCCCCC
Q 046848          832 MDLSYNNLSGKIPSGT  847 (956)
Q Consensus       832 L~ls~N~l~g~ip~~~  847 (956)
                      |++++|+++|.+|...
T Consensus       400 L~l~~N~l~~~~~~~~  415 (455)
T 3v47_A          400 IWLHTNPWDCSCPRID  415 (455)
T ss_dssp             EECCSSCBCCCTTTTH
T ss_pred             EEccCCCcccCCCcch
Confidence            9999999999999643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=9.6e-40  Score=373.09  Aligned_cols=432  Identities=24%  Similarity=0.291  Sum_probs=197.7

Q ss_pred             cccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCC
Q 046848          107 SSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHL  186 (956)
Q Consensus       107 ~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l  186 (956)
                      |.-.+.++|++|++++|.+ + .+|+.++++++|++|++++|.++|.+|..++++++|+++++..|..            
T Consensus         5 p~~~~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------   70 (454)
T 1jl5_A            5 PRNVSNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------   70 (454)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------
T ss_pred             ccccccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------
Confidence            3444568999999999999 4 4999999999999999999999999999999999887777766531            


Q ss_pred             CCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhccc
Q 046848          187 SSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSN  266 (956)
Q Consensus       187 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~  266 (956)
                      .++++|++++|.+++++.+      .++|++|++++|.+.+ +|.      ..++|++                      
T Consensus        71 ~~l~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~-lp~------~~~~L~~----------------------  115 (454)
T 1jl5_A           71 RQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTE-LPE------LPQSLKS----------------------  115 (454)
T ss_dssp             HTCSEEECTTSCCSCCCSC------CTTCSEEECCSSCCSS-CCC------CCTTCCE----------------------
T ss_pred             cCCCEEEecCCccccCCCC------cCCCCEEEccCCcCCc-ccc------ccCCCcE----------------------
Confidence            4566777777766665432      2455555555555544 221      0134444                      


Q ss_pred             ccceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCC
Q 046848          267 LVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLA  346 (956)
Q Consensus       267 L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~  346 (956)
                          |++++|.+++. |..   .++|++|++++|.++++| .+.++++|++|++++|++++ +|..   ..      +|+
T Consensus       116 ----L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~------~L~  176 (454)
T 1jl5_A          116 ----LLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDL---PP------SLE  176 (454)
T ss_dssp             ----EECCSSCCSCC-CSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCC---CT------TCC
T ss_pred             ----EECCCCccCcc-cCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCC---cc------ccc
Confidence                44444444431 110   145666666666666655 35666666666666666554 2221   11      566


Q ss_pred             EEEccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCc
Q 046848          347 WLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNS  426 (956)
Q Consensus       347 ~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  426 (956)
                      +|++++|.+++ +|.++.+++|++|++++|.+++ +|..   .++|++|++++|.++. +|.  +..+++|++|++++|+
T Consensus       177 ~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~~-lp~--~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          177 FIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILEE-LPE--LQNLPFLTTIYADNNL  248 (454)
T ss_dssp             EEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSC
T ss_pred             EEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCCc-ccc--cCCCCCCCEEECCCCc
Confidence            66666666665 3456666666666666666654 2221   2466666666666663 332  5566666666666666


Q ss_pred             ccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCC
Q 046848          427 LTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPN  506 (956)
Q Consensus       427 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~  506 (956)
                      +++...    .+.+|+.|++++|.+.+ +|..   .++|++|++++|.+++. |                          
T Consensus       249 l~~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~--------------------------  293 (454)
T 1jl5_A          249 LKTLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-S--------------------------  293 (454)
T ss_dssp             CSSCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-S--------------------------
T ss_pred             CCcccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-c--------------------------
Confidence            553211    11344444444444432 2211   13444444444444331 0                          


Q ss_pred             CCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCC
Q 046848          507 LSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLA  586 (956)
Q Consensus       507 ~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  586 (956)
                                              ..+.+++.|++++|.+++... .    .++|++|++++|++++ +|..   +++|+
T Consensus       294 ------------------------~~~~~L~~L~l~~N~l~~i~~-~----~~~L~~L~Ls~N~l~~-lp~~---~~~L~  340 (454)
T 1jl5_A          294 ------------------------ELPPNLYYLNASSNEIRSLCD-L----PPSLEELNVSNNKLIE-LPAL---PPRLE  340 (454)
T ss_dssp             ------------------------CCCTTCCEEECCSSCCSEECC-C----CTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred             ------------------------CcCCcCCEEECcCCcCCcccC-C----cCcCCEEECCCCcccc-cccc---CCcCC
Confidence                                    011233344444444333110 0    0467788888888875 5543   47788


Q ss_pred             EEEcCCCcccccCCCCcCCCCCcCEEEccCceeee--eCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEcc
Q 046848          587 ILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTG--ELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLK  664 (956)
Q Consensus       587 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~  664 (956)
                      +|++++|+++ .+|.   .+++|++|++++|++++  .+|..+..        ++.|.+.|.+|..    +++|++|+++
T Consensus       341 ~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~----~~~L~~L~ls  404 (454)
T 1jl5_A          341 RLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL----PQNLKQLHVE  404 (454)
T ss_dssp             EEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC----------------------
T ss_pred             EEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc----cCcCCEEECC
Confidence            8888888887 4565   36788888888888887  56655432        3346677777762    5688899999


Q ss_pred             CCcccc--cCCccccCCCCcCEEeccCCcCCCCcChhccccc
Q 046848          665 SNKFNG--SIPLQLCHLANVQILDLSSNNISGIIPKCFNNFT  704 (956)
Q Consensus       665 ~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  704 (956)
                      +|++++  .+|.      +++.|.+.+|.+.+.++.......
T Consensus       405 ~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~~~  440 (454)
T 1jl5_A          405 TNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHETTD  440 (454)
T ss_dssp             ------------------------------------------
T ss_pred             CCcCCccccchh------hHhheeCcCcccCCccccCHHHhh
Confidence            999886  5553      466777888888877766555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.6e-38  Score=362.89  Aligned_cols=144  Identities=24%  Similarity=0.246  Sum_probs=66.5

Q ss_pred             CCccEEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCC-------------cEEECCCCcCcccc
Q 046848          240 TSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSL-------------NTLFLASNQFREIP  306 (956)
Q Consensus       240 ~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L-------------~~L~Ls~n~l~~ip  306 (956)
                      +.|+++++++|.+ +.+|..+++++. | ++|++++|.+.|.+|..++.+++|             ++|++++|.++++|
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~-L-~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKS-K-TEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             ------------------------CC-H-HHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             ccchhhhcccCch-hhCChhHhcccc-h-hhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            5677777777777 677777777777 7 778888888877777777777664             66666666666655


Q ss_pred             ccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCCCCCEEEeeccccccccchhh
Q 046848          307 KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSV  386 (956)
Q Consensus       307 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l  386 (956)
                      ..   .++|++|++++|.+++ +|..   ..      +|++|++++|.+++.. .+  .++|++|++++|.+++ +| .+
T Consensus        88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~------~L~~L~l~~n~l~~l~-~~--~~~L~~L~L~~n~l~~-lp-~~  149 (454)
T 1jl5_A           88 EL---PPHLESLVASCNSLTE-LPEL---PQ------SLKSLLVDNNNLKALS-DL--PPLLEYLGVSNNQLEK-LP-EL  149 (454)
T ss_dssp             SC---CTTCSEEECCSSCCSS-CCCC---CT------TCCEEECCSSCCSCCC-SC--CTTCCEEECCSSCCSS-CC-CC
T ss_pred             CC---cCCCCEEEccCCcCCc-cccc---cC------CCcEEECCCCccCccc-CC--CCCCCEEECcCCCCCC-Cc-cc
Confidence            42   2456666666666554 3321   11      5555555555554321 11  1345555555555443 33 34


Q ss_pred             cCCCCCCEEECcCccCcc
Q 046848          387 GQLVKLESLFLHNNSLRG  404 (956)
Q Consensus       387 ~~l~~L~~L~L~~n~l~~  404 (956)
                      +.+++|++|++++|++++
T Consensus       150 ~~l~~L~~L~l~~N~l~~  167 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNSLKK  167 (454)
T ss_dssp             TTCTTCCEEECCSSCCSC
T ss_pred             CCCCCCCEEECCCCcCcc
Confidence            444444455544444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.4e-37  Score=355.50  Aligned_cols=383  Identities=23%  Similarity=0.279  Sum_probs=288.3

Q ss_pred             ceEEecccccccCCCcccCCCCCCcEEECCCCcCccc-cccccCCCCCCEEEccCCCCCCcc-hHHHhhcCCCCccCCCC
Q 046848          269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREI-PKSLGNMCNLKSLTLSYNTLRGDL-SEIIQNLSDGCTKTSLA  346 (956)
Q Consensus       269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~~~~~~~L~  346 (956)
                      +.++.+++.++. +|. +  .++|++|++++|.++++ |..|.++++|++|++++|.+.+.+ +..+..++      +|+
T Consensus        13 ~~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~------~L~   82 (455)
T 3v47_A           13 YNAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS------SLI   82 (455)
T ss_dssp             TEEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCT------TCC
T ss_pred             cccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccc------cCC
Confidence            344555555542 333 2  25677777777777663 556677777777777777766444 34566665      777


Q ss_pred             EEEccCCcCcccCCC-CCCCCCCCEEEeeccccccccchh--hcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcC
Q 046848          347 WLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKS--VGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLA  423 (956)
Q Consensus       347 ~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls  423 (956)
                      +|++++|.+++..|. ++.+++|++|++++|.+++..+..  +..+++|++|++++|++++..+..++.++++|++|+++
T Consensus        83 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  162 (455)
T 3v47_A           83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT  162 (455)
T ss_dssp             EEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred             EEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence            777777777766554 777777777777777777655544  77778888888888888777666667778888888888


Q ss_pred             CCcccccccCCcCCC--CCcceEEcCCCCCCCCCchhh--------hcccceeEEEeeCCCCCCCccchhhhcc--CCcc
Q 046848          424 DNSLTLEFSHDWIPP--FQLSQVNLGSCKIGPRFPKWL--------RNQNQILSLDISNSGISDTVPNWFWNQT--YNLS  491 (956)
Q Consensus       424 ~n~l~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~l--------~~l~~L~~L~Ls~n~i~~~~~~~~~~~~--~~L~  491 (956)
                      +|.+++..+..+...  .+++.+++++|.+....+.++        ..+++|++|++++|++++..|..+....  .+|+
T Consensus       163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~  242 (455)
T 3v47_A          163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ  242 (455)
T ss_dssp             TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEE
T ss_pred             CCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccccee
Confidence            888777666666544  577888888888776555443        3567899999999999888887776542  5788


Q ss_pred             eEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCC
Q 046848          492 FFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLL  571 (956)
Q Consensus       492 ~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l  571 (956)
                      .|++++|.+.+....               .+.+.+..+             ..       +.....++|+.|++++|.+
T Consensus       243 ~L~l~~~~~~~~~~~---------------~~~~~~~~~-------------~~-------~~~~~~~~L~~L~l~~n~l  287 (455)
T 3v47_A          243 SLILSNSYNMGSSFG---------------HTNFKDPDN-------------FT-------FKGLEASGVKTCDLSKSKI  287 (455)
T ss_dssp             EEECTTCTTTSCCTT---------------CCSSCCCCT-------------TT-------TGGGTTSCCCEEECCSSCC
T ss_pred             eEeeccccccccccc---------------hhhhccCcc-------------cc-------cccccccCceEEEecCccc
Confidence            899888876643211               111111000             00       0111126899999999999


Q ss_pred             CCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhH
Q 046848          572 SGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWI  651 (956)
Q Consensus       572 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~  651 (956)
                      ++..|..+..+++|++|++++|++.+..|..|.++++|++|++++|++++..|..|.++++|++|+|++|++++..|..+
T Consensus       288 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  367 (455)
T 3v47_A          288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF  367 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997667777


Q ss_pred             hhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcC
Q 046848          652 GEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIP  697 (956)
Q Consensus       652 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  697 (956)
                      . ++++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus       368 ~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          368 L-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             T-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             c-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            6 79999999999999998777778999999999999999998877

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.5e-38  Score=344.16  Aligned_cols=294  Identities=33%  Similarity=0.489  Sum_probs=223.5

Q ss_pred             CCCHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCCcc--ccceeecCCC--CcEEEEECCCCCCCCCCCCcc--ccccc
Q 046848           35 RCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCG--WRGVNCSNRT--GHVYKLDLHILQVFPSPCLKG--TISSS  108 (956)
Q Consensus        35 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~l~g--~l~~~  108 (956)
                      .|.++|++||++||+++.+|. .+.+|.   .+.+||.  |+||.|+..+  ++|+.+++++      +.+.|  .+|++
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~------~~l~~~~~~~~~   71 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG------LNLPKPYPIPSS   71 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC------CCCSSCEECCGG
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC------CCccCCcccChh
Confidence            599999999999999998876 789997   4678998  9999998655  8999999998      67888  89999


Q ss_pred             cccccCCCEEeCCC-CCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCC
Q 046848          109 LLILQHLTYLDLSG-NNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLS  187 (956)
Q Consensus       109 l~~l~~L~~L~Ls~-n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~  187 (956)
                      +.++++|++|++++ |.+.+. +|..++++++|++|+|++|.+++.+|..+.++++|++|++++|.+ ....+..+..++
T Consensus        72 l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~  149 (313)
T 1ogq_A           72 LANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLP  149 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE-ESCCCGGGGGCT
T ss_pred             HhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc-CCcCChHHhcCC
Confidence            99999999999995 888876 899999999999999999999999999999999999999999987 334445555566


Q ss_pred             CCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccc
Q 046848          188 SLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNL  267 (956)
Q Consensus       188 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L  267 (956)
                      +|++|++++|.++                          +.+|  ..+....++|++|++++|.+.+.+|..+..+.  |
T Consensus       150 ~L~~L~L~~N~l~--------------------------~~~p--~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--L  199 (313)
T 1ogq_A          150 NLVGITFDGNRIS--------------------------GAIP--DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--L  199 (313)
T ss_dssp             TCCEEECCSSCCE--------------------------EECC--GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--C
T ss_pred             CCCeEECcCCccc--------------------------CcCC--HHHhhhhhcCcEEECcCCeeeccCChHHhCCc--c
Confidence            6666666555554                          2232  23333312566666666666666666665553  5


Q ss_pred             cceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCE
Q 046848          268 VELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAW  347 (956)
Q Consensus       268 ~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~  347 (956)
                       +.|++++|.+++..|..+..+++|++|++++|.+++.+..+..+++|++|++++|.+++.+|..+..++      +|++
T Consensus       200 -~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~------~L~~  272 (313)
T 1ogq_A          200 -AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK------FLHS  272 (313)
T ss_dssp             -SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT------TCCE
T ss_pred             -cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCc------CCCE
Confidence             777777777777777777777777777777777776444466777777777777777777777776666      6777


Q ss_pred             EEccCCcCcccCCCCCCCCCCCEEEeeccc
Q 046848          348 LFLDSNEITGSLPNFGGFSSLKRLSIANNR  377 (956)
Q Consensus       348 L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~  377 (956)
                      |++++|.+++.+|....+++|+.+++++|+
T Consensus       273 L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          273 LNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             EECcCCcccccCCCCccccccChHHhcCCC
Confidence            777777777666666666666666666665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.4e-35  Score=334.12  Aligned_cols=377  Identities=21%  Similarity=0.188  Sum_probs=240.1

Q ss_pred             cccccccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccc
Q 046848          103 GTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEW  182 (956)
Q Consensus       103 g~l~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~  182 (956)
                      +..+.+++++++|++|++++|.+++  +| .++.+++|++|++++|++++ +|  ++++++|++|++++|.+...    .
T Consensus        32 ~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~----~  101 (457)
T 3bz5_A           32 ATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL----D  101 (457)
T ss_dssp             TTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC----C
T ss_pred             cccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee----e
Confidence            3345578889999999999999984  56 68899999999999999986 44  88999999999999987332    2


Q ss_pred             cCCCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHh
Q 046848          183 LSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFN  262 (956)
Q Consensus       183 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  262 (956)
                      ++++++|++|++++|.+++++     ++.+++|++|++++|.+.+. +    +.. +++                     
T Consensus       102 ~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l-~----l~~-l~~---------------------  149 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEI-D----VSH-NTQ---------------------  149 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCC-C----CTT-CTT---------------------
T ss_pred             cCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCcccee-c----ccc-CCc---------------------
Confidence            777888888888888777642     45555555555555544431 1    011 122                     


Q ss_pred             hcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCcc
Q 046848          263 VSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTK  342 (956)
Q Consensus       263 ~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~  342 (956)
                          | +++++++|...+.+  .+..+++|++|++++|+++++|  +..+++|+.|++++|.+++               
T Consensus       150 ----L-~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~---------------  205 (457)
T 3bz5_A          150 ----L-TELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITK---------------  205 (457)
T ss_dssp             ----C-CEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSC---------------
T ss_pred             ----C-CEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCe---------------
Confidence                2 33333333222222  2444555555555555555554  4445555555555554443               


Q ss_pred             CCCCEEEccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEc
Q 046848          343 TSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYL  422 (956)
Q Consensus       343 ~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  422 (956)
                                     .  .++.+++|++|++++|++++ +|  +..+++|++|++++|++++..    ...+++|+.|++
T Consensus       206 ---------------~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l  261 (457)
T 3bz5_A          206 ---------------L--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHC  261 (457)
T ss_dssp             ---------------C--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEEC
T ss_pred             ---------------e--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEec
Confidence                           2  24455566666666666654 33  556666666666666666543    234556666665


Q ss_pred             CCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccc
Q 046848          423 ADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKG  502 (956)
Q Consensus       423 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~  502 (956)
                      +.|.                                      |+.|++++|.+.+.+|.   ..+++|+.|++++|...+
T Consensus       262 ~~n~--------------------------------------L~~L~l~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~  300 (457)
T 3bz5_A          262 IQTD--------------------------------------LLEIDLTHNTQLIYFQA---EGCRKIKELDVTHNTQLY  300 (457)
T ss_dssp             TTCC--------------------------------------CSCCCCTTCTTCCEEEC---TTCTTCCCCCCTTCTTCC
T ss_pred             cCCC--------------------------------------CCEEECCCCccCCcccc---cccccCCEEECCCCcccc
Confidence            5542                                      22333444444444432   234566666666666554


Q ss_pred             cCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCC
Q 046848          503 KLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQF  582 (956)
Q Consensus       503 ~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l  582 (956)
                      .+|.                         ...+++.+++++|              ++|++|++++|++++. +  ++.+
T Consensus       301 ~l~~-------------------------~~~~L~~L~l~~~--------------~~L~~L~L~~N~l~~l-~--l~~l  338 (457)
T 3bz5_A          301 LLDC-------------------------QAAGITELDLSQN--------------PKLVYLYLNNTELTEL-D--VSHN  338 (457)
T ss_dssp             EEEC-------------------------TTCCCSCCCCTTC--------------TTCCEEECTTCCCSCC-C--CTTC
T ss_pred             eecc-------------------------CCCcceEechhhc--------------ccCCEEECCCCccccc-c--cccC
Confidence            4442                         2234555666665              6899999999999974 3  8889


Q ss_pred             CCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEE
Q 046848          583 DSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLS  662 (956)
Q Consensus       583 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~  662 (956)
                      ++|+.|++++|++++        ++.|+.|++++|.+.|.     ..+..|+.+++++|+++|.+|..++....++....
T Consensus       339 ~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~  405 (457)
T 3bz5_A          339 TKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE  405 (457)
T ss_dssp             TTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEE
T ss_pred             CcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeecc
Confidence            999999999999885        35677788999999876     24566888899999999999987765445555544


Q ss_pred             ccC
Q 046848          663 LKS  665 (956)
Q Consensus       663 L~~  665 (956)
                      -+.
T Consensus       406 ~~~  408 (457)
T 3bz5_A          406 PGD  408 (457)
T ss_dssp             ESS
T ss_pred             CCC
Confidence            443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-35  Score=339.71  Aligned_cols=362  Identities=20%  Similarity=0.212  Sum_probs=220.9

Q ss_pred             cCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccC
Q 046848          280 GSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSL  359 (956)
Q Consensus       280 ~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~  359 (956)
                      +..+..++.+++|++|++++|.++++| .+..+++|++|++++|.+++. |  +..++      +|++|++++|.+++. 
T Consensus        32 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~------~L~~L~Ls~N~l~~~-  100 (457)
T 3bz5_A           32 ATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTL-D--LSQNT------NLTYLACDSNKLTNL-  100 (457)
T ss_dssp             TTSEEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCC-C--CTTCT------TCSEEECCSSCCSCC-
T ss_pred             cccccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeE-c--cccCC------CCCEEECcCCCCcee-
Confidence            334445666777777777777777765 566777777777777777654 2  44444      677777777776654 


Q ss_pred             CCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCC
Q 046848          360 PNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPF  439 (956)
Q Consensus       360 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  439 (956)
                      + ++.+++|++|++++|.+++. +  ++.+++|++|++++|++++. +   ++.+++|++|++++|...+..  .     
T Consensus       101 ~-~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~---l~~l~~L~~L~l~~n~~~~~~--~-----  165 (457)
T 3bz5_A          101 D-VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D---VSHNTQLTELDCHLNKKITKL--D-----  165 (457)
T ss_dssp             C-CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C---CTTCTTCCEEECTTCSCCCCC--C-----
T ss_pred             e-cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c---cccCCcCCEEECCCCCccccc--c-----
Confidence            2 66677777777777777653 2  66677777777777777664 1   456666666666666433221  1     


Q ss_pred             CcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeee
Q 046848          440 QLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGID  519 (956)
Q Consensus       440 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~  519 (956)
                                         +..+++|++|++++|++++. |   ...+++|+.|++++|++++. +              
T Consensus       166 -------------------~~~l~~L~~L~ls~n~l~~l-~---l~~l~~L~~L~l~~N~l~~~-~--------------  207 (457)
T 3bz5_A          166 -------------------VTPQTQLTTLDCSFNKITEL-D---VSQNKLLNRLNCDTNNITKL-D--------------  207 (457)
T ss_dssp             -------------------CTTCTTCCEEECCSSCCCCC-C---CTTCTTCCEEECCSSCCSCC-C--------------
T ss_pred             -------------------cccCCcCCEEECCCCcccee-c---cccCCCCCEEECcCCcCCee-c--------------
Confidence                               33445555555555555432 2   11233444444444443311 0              


Q ss_pred             cccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccC
Q 046848          520 ISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKI  599 (956)
Q Consensus       520 ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  599 (956)
                      +                                 ..  .++|++|++++|++++ +|  +..+++|+.|++++|++++..
T Consensus       208 l---------------------------------~~--l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          208 L---------------------------------NQ--NIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             C---------------------------------TT--CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             c---------------------------------cc--CCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence            0                                 00  0455566666666654 33  555566666666666665432


Q ss_pred             CCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCC
Q 046848          600 PDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHL  679 (956)
Q Consensus       600 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  679 (956)
                         ++.+++|+.|++++|              +|+.|++++|.+.|.+|.  . ++++|+.|++++|+..+.+|.   ..
T Consensus       250 ---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~--~-~l~~L~~L~Ls~n~~l~~l~~---~~  306 (457)
T 3bz5_A          250 ---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA--E-GCRKIKELDVTHNTQLYLLDC---QA  306 (457)
T ss_dssp             ---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC--T-TCTTCCCCCCTTCTTCCEEEC---TT
T ss_pred             ---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc--c-ccccCCEEECCCCcccceecc---CC
Confidence               234555555555544              244555666665555552  1 355555555555555555442   22


Q ss_pred             CCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeE
Q 046848          680 ANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKI  759 (956)
Q Consensus       680 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  759 (956)
                      ++|+.|++++|                                                                +.|++
T Consensus       307 ~~L~~L~l~~~----------------------------------------------------------------~~L~~  322 (457)
T 3bz5_A          307 AGITELDLSQN----------------------------------------------------------------PKLVY  322 (457)
T ss_dssp             CCCSCCCCTTC----------------------------------------------------------------TTCCE
T ss_pred             CcceEechhhc----------------------------------------------------------------ccCCE
Confidence            34444444443                                                                23488


Q ss_pred             EEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcc
Q 046848          760 LDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNL  839 (956)
Q Consensus       760 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l  839 (956)
                      |++++|++++. +  ++.+++|+.|++++|++++        ++.|+.|++++|.++|.     ..+..|..+++++|++
T Consensus       323 L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l  386 (457)
T 3bz5_A          323 LYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSL  386 (457)
T ss_dssp             EECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBE
T ss_pred             EECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcE
Confidence            99999999984 3  8899999999999999986        35677778999999986     2455688899999999


Q ss_pred             eecCCCC
Q 046848          840 SGKIPSG  846 (956)
Q Consensus       840 ~g~ip~~  846 (956)
                      +|.||..
T Consensus       387 ~g~ip~~  393 (457)
T 3bz5_A          387 TIAVSPD  393 (457)
T ss_dssp             EEECCTT
T ss_pred             EEEcChh
Confidence            9999974

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.4e-34  Score=329.61  Aligned_cols=123  Identities=30%  Similarity=0.395  Sum_probs=56.2

Q ss_pred             ceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecC
Q 046848          560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG  639 (956)
Q Consensus       560 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  639 (956)
                      +|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..|  +..+++|++|++++|++++..+  +..+++|+.|+++
T Consensus       222 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~  295 (466)
T 1o6v_A          222 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN  295 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence            444444444444421  234445555555555555544332  4445555555555555543322  4444555555555


Q ss_pred             CccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCC
Q 046848          640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS  693 (956)
Q Consensus       640 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  693 (956)
                      +|++++ ++. +. .+++|++|++++|++++..|  +..+++|+.|++++|+++
T Consensus       296 ~n~l~~-~~~-~~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  344 (466)
T 1o6v_A          296 ENQLED-ISP-IS-NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS  344 (466)
T ss_dssp             SSCCSC-CGG-GG-GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             CCcccC-chh-hc-CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence            555542 222 22 34444444444444443332  334444444444444444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=7.7e-34  Score=327.62  Aligned_cols=214  Identities=27%  Similarity=0.430  Sum_probs=167.8

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ++|++|++++|.+++.  ..+..+++|+.|++++|.+.+..|  ++.+++|++|++++|++++.  ..+..+++|+.|++
T Consensus       177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l  250 (466)
T 1o6v_A          177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL  250 (466)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEEC
Confidence            4666777777766643  236777778888888887776554  66678888888888887743  35777888888888


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS  718 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  718 (956)
                      ++|++++..|  +. .+++|++|++++|++.+..+  +..+++|+.|++++|++++..+  +..+++|            
T Consensus       251 ~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L------------  311 (466)
T 1o6v_A          251 ANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL------------  311 (466)
T ss_dssp             CSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC------------
T ss_pred             CCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC------------
Confidence            8888874433  33 68888888888888886544  7788899999999998886544  4444444            


Q ss_pred             cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848          719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK  798 (956)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  798 (956)
                                                             +.|+|++|++++..|  +..+++|+.|++++|++++.  +.
T Consensus       312 ---------------------------------------~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~  348 (466)
T 1o6v_A          312 ---------------------------------------TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS  348 (466)
T ss_dssp             ---------------------------------------SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred             ---------------------------------------CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence                                                   889999999987766  78899999999999999874  57


Q ss_pred             ccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceec
Q 046848          799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK  842 (956)
Q Consensus       799 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  842 (956)
                      ++.+++|+.|++++|++++.+|  +..+++|+.|++++|++++.
T Consensus       349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            8999999999999999998887  88999999999999999984

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8e-35  Score=337.52  Aligned_cols=235  Identities=18%  Similarity=0.180  Sum_probs=162.8

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ++|++|++++|++++..+..|..+++|+.|++++|.+.+..|..|.++++|++|++++|++++..+..|.++++|+.|+|
T Consensus       104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  183 (477)
T 2id5_A          104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL  183 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred             CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence            45556666666666555666666666666666666666666666666666777777777666555556666667777777


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS  718 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  718 (956)
                      ++|.+.+ ++...+..+++|++|++++|.+.+.+|.......+|+.|++++|++++..+..+..+++|            
T Consensus       184 ~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L------------  250 (477)
T 2id5_A          184 RHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL------------  250 (477)
T ss_dssp             ESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC------------
T ss_pred             CCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc------------
Confidence            7776663 333333356677777777766666666655555677777777777765444455555444            


Q ss_pred             cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848          719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK  798 (956)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  798 (956)
                                                             +.|+|++|.+++..+..|..+++|+.|+|++|++++..|..
T Consensus       251 ---------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  291 (477)
T 2id5_A          251 ---------------------------------------RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA  291 (477)
T ss_dssp             ---------------------------------------CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred             ---------------------------------------CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH
Confidence                                                   67777777777666677777888888888888888777888


Q ss_pred             ccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848          799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       799 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  845 (956)
                      |..+++|+.|+|++|++++..+..|..+++|++|++++|++.|.++.
T Consensus       292 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred             hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence            88888888888888888877777777888888888888888877654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6e-35  Score=317.50  Aligned_cols=258  Identities=33%  Similarity=0.587  Sum_probs=243.8

Q ss_pred             CceeEEECCCCCCCC--CCCccccCCCCCCEEEcCC-CcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcE
Q 046848          559 HKLDYIDLSNNLLSG--RLPDCWSQFDSLAILNLAN-NSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTL  635 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  635 (956)
                      ..++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..|+++++|++|++++|++++.+|..|.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            479999999999999  8999999999999999995 9999999999999999999999999999999999999999999


Q ss_pred             EecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCC-CcCEEeccCCcCCCCcChhccccccCcccccCcc
Q 046848          636 MDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLA-NVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNL  714 (956)
Q Consensus       636 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~  714 (956)
                      |++++|++++.+|..+. .+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..++ |        
T Consensus       130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L--------  199 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L--------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred             EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence            99999999999999887 799999999999999999999999998 999999999999999998887654 4        


Q ss_pred             cccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccccc
Q 046848          715 TLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQ  794 (956)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  794 (956)
                                                                 +.|+|++|++++.+|..+..+++|+.|+|++|++++.
T Consensus       200 -------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          200 -------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             -------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             -------------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence                                                       8999999999999999999999999999999999977


Q ss_pred             CCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcCCccccccccCC-CCCCCCCCCCC
Q 046848          795 ITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCGLPLPNKC  871 (956)
Q Consensus       795 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~~~~c  871 (956)
                      +|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.+| .+||.|.+ .|
T Consensus       237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            666 89999999999999999999999999999999999999999999999888888988999999 79998876 46

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=326.83  Aligned_cols=234  Identities=19%  Similarity=0.171  Sum_probs=172.5

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ++|++|++++|.+++..+..|.++++|+.|++++|++++..+..+..+++|+.|++++|.+++..+..|..+++|+.|++
T Consensus       128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  207 (477)
T 2id5_A          128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI  207 (477)
T ss_dssp             TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred             ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence            45666677777766666667777777788888877777666666777788888888888887777777788888888888


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS  718 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  718 (956)
                      ++|...+.+|...+ ...+|++|++++|++++..+..+..+++|+.|+|++|++++..+..|..++.|            
T Consensus       208 ~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------  274 (477)
T 2id5_A          208 SHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL------------  274 (477)
T ss_dssp             ECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTC------------
T ss_pred             CCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccC------------
Confidence            88877777777766 35678888888888875444567788888888888888877666666665555            


Q ss_pred             cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848          719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK  798 (956)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  798 (956)
                                                             +.|+|++|++++..|..|..+++|+.|+|++|++++..+..
T Consensus       275 ---------------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  315 (477)
T 2id5_A          275 ---------------------------------------QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV  315 (477)
T ss_dssp             ---------------------------------------CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred             ---------------------------------------CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence                                                   77888888888877888888888888888888888766677


Q ss_pred             ccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848          799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       799 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  845 (956)
                      |..+++|+.|+|++|++++..+.. .-...+..+++..+...|.-|.
T Consensus       316 ~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          316 FHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             BSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred             cCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCch
Confidence            788888888888888887543321 1112334455667777776664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.9e-32  Score=306.03  Aligned_cols=328  Identities=20%  Similarity=0.229  Sum_probs=218.0

Q ss_pred             CCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEE
Q 046848          389 LVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSL  468 (956)
Q Consensus       389 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  468 (956)
                      +++++.|++++|.++...+. .+..+++|++|++++|.++...+..+..+.+|++|++++|.+.+..|..+..+++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAA-LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTH-HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChh-HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            34555555555555543332 34555555555555555554444444455555555555555555555556666666666


Q ss_pred             EeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCcc
Q 046848          469 DISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSG  548 (956)
Q Consensus       469 ~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~  548 (956)
                      ++++|++++ +|...+..+                                                             
T Consensus       123 ~L~~n~l~~-l~~~~~~~l-------------------------------------------------------------  140 (390)
T 3o6n_A          123 VLERNDLSS-LPRGIFHNT-------------------------------------------------------------  140 (390)
T ss_dssp             ECCSSCCCC-CCTTTTTTC-------------------------------------------------------------
T ss_pred             ECCCCccCc-CCHHHhcCC-------------------------------------------------------------
Confidence            666665552 222211112                                                             


Q ss_pred             ccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCcccc
Q 046848          549 SISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFT  628 (956)
Q Consensus       549 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  628 (956)
                                ++|++|++++|.+++..|..+..+++|++|++++|++++.   .+..+++|+.|++++|.+++.     .
T Consensus       141 ----------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~  202 (390)
T 3o6n_A          141 ----------PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----A  202 (390)
T ss_dssp             ----------TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----E
T ss_pred             ----------CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----C
Confidence                      4566666666666666666677777777777777777653   245567777777777777642     2


Q ss_pred             CCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcc
Q 046848          629 NGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTH  708 (956)
Q Consensus       629 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  708 (956)
                      ..++|+.|++++|.+. .+|..   ..++|++|++++|++++.  ..+..+++|++|++++|.+++..|..+..+++|  
T Consensus       203 ~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--  274 (390)
T 3o6n_A          203 IPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL--  274 (390)
T ss_dssp             CCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC--
T ss_pred             CCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC--
Confidence            3356778888888777 45543   246788888888888753  467778888888888888887777777666655  


Q ss_pred             cccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccc
Q 046848          709 EKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSR  788 (956)
Q Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  788 (956)
                                                                       +.|+|++|++++ +|..+..+++|+.|+|++
T Consensus       275 -------------------------------------------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~  304 (390)
T 3o6n_A          275 -------------------------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSH  304 (390)
T ss_dssp             -------------------------------------------------CEEECCSSCCCE-EECSSSCCTTCCEEECCS
T ss_pred             -------------------------------------------------CEEECCCCcCcc-cCcccCCCCCCCEEECCC
Confidence                                                             778888888874 566667888999999999


Q ss_pred             ccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcCCccccccccCC
Q 046848          789 NTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN  860 (956)
Q Consensus       789 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n  860 (956)
                      |+++ .+|..++.+++|+.|++++|+++.. |  +..+++|+.|++++|++.|.... ..+..+....+.++
T Consensus       305 n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~  371 (390)
T 3o6n_A          305 NHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDA  371 (390)
T ss_dssp             SCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCC
T ss_pred             Ccce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhccccc
Confidence            9998 6788888899999999999999854 3  67788999999999999987533 12333333334444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.5e-32  Score=322.45  Aligned_cols=237  Identities=22%  Similarity=0.242  Sum_probs=184.0

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ++|++|++++|.+++..|..|..+++|+.|++++|.+++.   .++.+++|+.|++++|.+++.     ...++|+.|++
T Consensus       147 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~l  218 (597)
T 3oja_B          147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDA  218 (597)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCTTCSEEEC
T ss_pred             CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCchhheeec
Confidence            5677777777777777777777788888888888887754   245577788888888877642     33457888888


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS  718 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  718 (956)
                      ++|.+. .+|..+   .++|+.|++++|.+++  +..+..+++|+.|+|++|.+++..|..|..+++|            
T Consensus       219 s~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------  280 (597)
T 3oja_B          219 SHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------  280 (597)
T ss_dssp             CSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------
T ss_pred             cCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC------------
Confidence            888887 555433   3578888888888876  3578888888889999888888888887776666            


Q ss_pred             cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848          719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK  798 (956)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  798 (956)
                                                             +.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..
T Consensus       281 ---------------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~  319 (597)
T 3oja_B          281 ---------------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERN  319 (597)
T ss_dssp             ---------------------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGG
T ss_pred             ---------------------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcc
Confidence                                                   788899998885 5777778899999999999998 68888


Q ss_pred             ccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcCCccccccccCC-CCCCCC
Q 046848          799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCGLP  866 (956)
Q Consensus       799 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~  866 (956)
                      ++.+++|+.|+|++|++++..   +..++.|+.|++++|+++|.++. ..+..+....+.++ ..|+.+
T Consensus       320 ~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          320 QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             HHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             cccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence            999999999999999998653   66788999999999999998643 24555566667777 777753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=2.1e-30  Score=287.20  Aligned_cols=215  Identities=26%  Similarity=0.369  Sum_probs=145.9

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ++|++|++++|.....++. +..+++|++|++++|.+.+..+  +..+++|++|++++|++++..+  +..+++|+.|++
T Consensus       132 ~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  206 (347)
T 4fmz_A          132 TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA  206 (347)
T ss_dssp             TTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             CceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeec
Confidence            4555666666644433332 6666777777777777664433  6667777777777777764333  667777777777


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS  718 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  718 (956)
                      ++|.+.+ ++. +. .+++|++|++++|++++..+  +..+++|+.|++++|.+++.  ..+..+++             
T Consensus       207 ~~n~l~~-~~~-~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~-------------  266 (347)
T 4fmz_A          207 YVNQITD-ITP-VA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTK-------------  266 (347)
T ss_dssp             CSSCCCC-CGG-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTT-------------
T ss_pred             ccCCCCC-Cch-hh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCC-------------
Confidence            7777763 333 33 57777777777777764433  67777888888888877653  23333333             


Q ss_pred             cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848          719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK  798 (956)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  798 (956)
                                                            |+.|++++|++++.  ..+..+++|+.|+|++|++++..|..
T Consensus       267 --------------------------------------L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~  306 (347)
T 4fmz_A          267 --------------------------------------LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEV  306 (347)
T ss_dssp             --------------------------------------CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred             --------------------------------------cCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhH
Confidence                                                  37788888888754  35777888888888888888777788


Q ss_pred             ccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcce
Q 046848          799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLS  840 (956)
Q Consensus       799 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  840 (956)
                      ++.+++|+.|++++|++++..|  +..+++|++||+++|+++
T Consensus       307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            8888888888888888887666  777888888888888774

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=2.9e-30  Score=286.05  Aligned_cols=307  Identities=25%  Similarity=0.361  Sum_probs=199.1

Q ss_pred             cCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCC
Q 046848          286 FGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGF  365 (956)
Q Consensus       286 l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l  365 (956)
                      +..+++|++|+++++.+..+|. +..+++|++|++++|.+++..+  +..++      +|++|++++|.+++ ++.+..+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~------~L~~L~L~~n~i~~-~~~~~~l  109 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLV------KLTNLYIGTNKITD-ISALQNL  109 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCT------TCCEEECCSSCCCC-CGGGTTC
T ss_pred             chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh--hhcCC------cCCEEEccCCcccC-chHHcCC
Confidence            3455677777777777776653 6667777777777777665433  55555      67777777766664 3446666


Q ss_pred             CCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEE
Q 046848          366 SSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVN  445 (956)
Q Consensus       366 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  445 (956)
                      ++|++|++++|.+.+..+  +..+++|++|++++|.....++.  +..+++|++|++++|.+.....             
T Consensus       110 ~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-------------  172 (347)
T 4fmz_A          110 TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP-------------  172 (347)
T ss_dssp             TTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG-------------
T ss_pred             CcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh-------------
Confidence            677777777776664332  66667777777777754444433  5666666666666665543221             


Q ss_pred             cCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeeccccee
Q 046848          446 LGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQF  525 (956)
Q Consensus       446 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l  525 (956)
                                   +..+++|++|++++|.+.+..+   ...+++|++|++++|.+++..+                    
T Consensus       173 -------------~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--------------------  216 (347)
T 4fmz_A          173 -------------IANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITP--------------------  216 (347)
T ss_dssp             -------------GGGCTTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--------------------
T ss_pred             -------------hccCCCCCEEEccCCccccccc---ccCCCccceeecccCCCCCCch--------------------
Confidence                         3344445555555554443322   2233445555555544432111                    


Q ss_pred             eecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCC
Q 046848          526 EGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGF  605 (956)
Q Consensus       526 ~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  605 (956)
                                                 ...  .++|++|++++|.+++..+  +..+++|++|++++|.+++.  ..+..
T Consensus       217 ---------------------------~~~--~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~  263 (347)
T 4fmz_A          217 ---------------------------VAN--MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKD  263 (347)
T ss_dssp             ---------------------------GGG--CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTT
T ss_pred             ---------------------------hhc--CCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhc
Confidence                                       000  1567777777777775433  77888888888888888753  45778


Q ss_pred             CCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEE
Q 046848          606 LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQIL  685 (956)
Q Consensus       606 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  685 (956)
                      +++|++|++++|++++.  ..+..+++|+.|++++|++++..|..+. .+++|++|++++|++++..|  +..+++|+.|
T Consensus       264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  338 (347)
T 4fmz_A          264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQNHITDIRP--LASLSKMDSA  338 (347)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH-TCTTCSEEECCSSSCCCCGG--GGGCTTCSEE
T ss_pred             CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh-ccccCCEEEccCCccccccC--hhhhhcccee
Confidence            88888888888888854  4578888899999999988866666665 68899999999999887655  7788899999


Q ss_pred             eccCCcCC
Q 046848          686 DLSSNNIS  693 (956)
Q Consensus       686 ~Ls~N~l~  693 (956)
                      ++++|+|+
T Consensus       339 ~l~~N~i~  346 (347)
T 4fmz_A          339 DFANQVIK  346 (347)
T ss_dssp             SSSCC---
T ss_pred             ehhhhccc
Confidence            99999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=2.1e-30  Score=291.83  Aligned_cols=309  Identities=19%  Similarity=0.200  Sum_probs=202.8

Q ss_pred             CCCCcEEECCCCcCcccccc-ccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCC-CCCCC
Q 046848          289 MPSLNTLFLASNQFREIPKS-LGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFS  366 (956)
Q Consensus       289 l~~L~~L~Ls~n~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~  366 (956)
                      ++++++|++++|.++.+|.. +..+++|++|++++|.+++..+..+..++      +|++|++++|.+++..|. ++.++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~  117 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------TIQKLYMGFNAIRYLPPHVFQNVP  117 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCC------CcCEEECCCCCCCcCCHHHhcCCC
Confidence            45666666666666665543 45566666666666666554444455544      555555555555544443 45555


Q ss_pred             CCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEc
Q 046848          367 SLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNL  446 (956)
Q Consensus       367 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L  446 (956)
                      +|++|++++|.++...+..+..+++|++|++++|++++..+. .+..+++|++|++++|.++                  
T Consensus       118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~------------------  178 (390)
T 3o6n_A          118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLT------------------  178 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCS------------------
T ss_pred             CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCC------------------
Confidence            555555555555433333344455555555555555444333 2344444444444444443                  


Q ss_pred             CCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceee
Q 046848          447 GSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFE  526 (956)
Q Consensus       447 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~  526 (956)
                            ..   .+..+++|+.|++++|.+++..      ..++|++|++++|.+.                         
T Consensus       179 ------~~---~~~~l~~L~~L~l~~n~l~~~~------~~~~L~~L~l~~n~l~-------------------------  218 (390)
T 3o6n_A          179 ------HV---DLSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSIN-------------------------  218 (390)
T ss_dssp             ------BC---CGGGCTTCSEEECCSSCCSEEE------CCSSCSEEECCSSCCC-------------------------
T ss_pred             ------cc---ccccccccceeecccccccccC------CCCcceEEECCCCeee-------------------------
Confidence                  22   1333455555666665554321      1234555555555544                         


Q ss_pred             ecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCC
Q 046848          527 GPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFL  606 (956)
Q Consensus       527 g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  606 (956)
                                           ......    .++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..|..|..+
T Consensus       219 ---------------------~~~~~~----~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (390)
T 3o6n_A          219 ---------------------VVRGPV----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM  271 (390)
T ss_dssp             ---------------------EEECCC----CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             ---------------------eccccc----cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence                                 211111    15788999999999864  578899999999999999999889999999


Q ss_pred             CCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEe
Q 046848          607 KNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILD  686 (956)
Q Consensus       607 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  686 (956)
                      ++|++|++++|++++ +|..+..+++|++|+|++|+++ .+|..+. .+++|++|++++|+++.. +  +..+++|+.|+
T Consensus       272 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~  345 (390)
T 3o6n_A          272 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLT  345 (390)
T ss_dssp             SSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEE
T ss_pred             ccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccc-ccCcCCEEECCCCcccee-C--chhhccCCEEE
Confidence            999999999999995 5666788999999999999998 8888887 699999999999999854 3  77889999999


Q ss_pred             ccCCcCCCC
Q 046848          687 LSSNNISGI  695 (956)
Q Consensus       687 Ls~N~l~~~  695 (956)
                      +++|++++.
T Consensus       346 l~~N~~~~~  354 (390)
T 3o6n_A          346 LSHNDWDCN  354 (390)
T ss_dssp             CCSSCEEHH
T ss_pred             cCCCCccch
Confidence            999999864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=7.6e-30  Score=303.26  Aligned_cols=309  Identities=19%  Similarity=0.201  Sum_probs=203.2

Q ss_pred             CCCCcEEECCCCcCcccccc-ccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCC-CCCCC
Q 046848          289 MPSLNTLFLASNQFREIPKS-LGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFS  366 (956)
Q Consensus       289 l~~L~~L~Ls~n~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~  366 (956)
                      +.+++.+++++|.+..+|.. +..+++|++|+|++|.+++..+..+..++      +|++|+|++|.+++..|. |+.++
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~  123 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------TIQKLYMGFNAIRYLPPHVFQNVP  123 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC------CCCEEECCCCcCCCCCHHHHcCCC
Confidence            34566666666666665532 45555666666666655555444555544      555555555555544443 45555


Q ss_pred             CCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEc
Q 046848          367 SLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNL  446 (956)
Q Consensus       367 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L  446 (956)
                      +|++|++++|.+++..+..++.+++|++|++++|.+++..+.. +..+++|++|++++|.+++                 
T Consensus       124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~-----------------  185 (597)
T 3oja_B          124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTH-----------------  185 (597)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECTTSCCSB-----------------
T ss_pred             CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcEEECcCCCCCC-----------------
Confidence            5555555555555433333445555555555555554444332 3444444444444444432                 


Q ss_pred             CCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceee
Q 046848          447 GSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFE  526 (956)
Q Consensus       447 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~  526 (956)
                             ..   +..+++|+.|++++|.+++..      ..++|+.|++++|.++                         
T Consensus       186 -------~~---~~~l~~L~~L~l~~n~l~~l~------~~~~L~~L~ls~n~l~-------------------------  224 (597)
T 3oja_B          186 -------VD---LSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSIN-------------------------  224 (597)
T ss_dssp             -------CC---GGGCTTCSEEECCSSCCSEEE------CCTTCSEEECCSSCCC-------------------------
T ss_pred             -------cC---hhhhhhhhhhhcccCcccccc------CCchhheeeccCCccc-------------------------
Confidence                   21   233455555555555554321      1224555555555543                         


Q ss_pred             ecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCC
Q 046848          527 GPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFL  606 (956)
Q Consensus       527 g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  606 (956)
                                           ...+...    ++|+.|++++|.+++  +..+..+++|+.|++++|.+.+.+|..|+.+
T Consensus       225 ---------------------~~~~~~~----~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  277 (597)
T 3oja_B          225 ---------------------VVRGPVN----VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM  277 (597)
T ss_dssp             ---------------------EEECSCC----SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             ---------------------ccccccC----CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence                                 2111111    578899999999986  4678899999999999999999999999999


Q ss_pred             CCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEe
Q 046848          607 KNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILD  686 (956)
Q Consensus       607 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  686 (956)
                      ++|+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|.++. .+++|++|+|++|++.+. |  +..+++|+.|+
T Consensus       278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~  351 (597)
T 3oja_B          278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLT  351 (597)
T ss_dssp             SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEE
T ss_pred             cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCc-C--hhhcCCCCEEE
Confidence            999999999999996 5777788999999999999999 8998887 699999999999999854 3  67789999999


Q ss_pred             ccCCcCCCC
Q 046848          687 LSSNNISGI  695 (956)
Q Consensus       687 Ls~N~l~~~  695 (956)
                      +++|++++.
T Consensus       352 l~~N~~~~~  360 (597)
T 3oja_B          352 LSHNDWDCN  360 (597)
T ss_dssp             CCSSCEEHH
T ss_pred             eeCCCCCCh
Confidence            999999865

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=7e-33  Score=320.08  Aligned_cols=86  Identities=20%  Similarity=0.196  Sum_probs=43.8

Q ss_pred             CceeEEECCCCCCCCC----CCccccCCCCCCEEEcCCCcccccC-----CCCcCCCCCcCEEEccCceeeee----CCc
Q 046848          559 HKLDYIDLSNNLLSGR----LPDCWSQFDSLAILNLANNSFFGKI-----PDSIGFLKNLQSLSLYNNRLTGE----LPS  625 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~  625 (956)
                      ++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..     +..+..+++|++|++++|+++..    ++.
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  278 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR  278 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence            3566666666666542    3444555556666666666554321     11122345555555555555532    344


Q ss_pred             cccCCCCCcEEecCCcccc
Q 046848          626 FFTNGSQLTLMDLGKNGLS  644 (956)
Q Consensus       626 ~~~~l~~L~~L~Ls~N~l~  644 (956)
                      .+..+++|++|++++|.+.
T Consensus       279 ~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          279 VLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             HHHHCTTCCEEECTTCCCH
T ss_pred             HHhhCCCcceEECCCCCCc
Confidence            4444555555555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.4e-32  Score=317.64  Aligned_cols=39  Identities=28%  Similarity=0.479  Sum_probs=22.8

Q ss_pred             CCCEEEeecccccc----ccchhhcCCCCCCEEECcCccCccc
Q 046848          367 SLKRLSIANNRLNG----TINKSVGQLVKLESLFLHNNSLRGV  405 (956)
Q Consensus       367 ~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~  405 (956)
                      +|++|++++|.++.    .++..+..+++|++|++++|.+++.
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  128 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA  128 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence            45566666665552    3455566666666666666666543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1e-30  Score=285.85  Aligned_cols=136  Identities=14%  Similarity=0.176  Sum_probs=86.0

Q ss_pred             cCCCHHHHHHHHHHHccC-CCCCCCCCCCCCC-CCCCCCccccceeecCCCCcEEEEECCCCCCCCCCCCcccccccccc
Q 046848           34 IRCIDEEREALLAFKQGL-VDESGILSSWGRE-DEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLI  111 (956)
Q Consensus        34 ~~~~~~~~~~ll~~k~~~-~~~~~~~~~W~~~-~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~  111 (956)
                      ..+..+|++||++||+++ .++.+...+|... ....++|.|.|+.|+....                    .+.  -..
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~--------------------~l~--~~~   79 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATAD--------------------LLE--DAT   79 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHH--------------------HHH--HHT
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHH--------------------HHh--ccc
Confidence            346788999999999988 4776667888310 1356899999999952100                    000  012


Q ss_pred             ccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcE
Q 046848          112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIY  191 (956)
Q Consensus       112 l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~  191 (956)
                      .+++++|+|++|.++  .+|..++++++|++|+|++|.++ .+|..++++++|++|++++|.+.  ..+..++++++|++
T Consensus        80 ~~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRE  154 (328)
T ss_dssp             STTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCE
T ss_pred             ccceeEEEccCCCch--hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCE
Confidence            356677777777776  46776777777777777777777 67777777777777777776652  22333444444444


Q ss_pred             Eeccc
Q 046848          192 LDLSF  196 (956)
Q Consensus       192 L~Ls~  196 (956)
                      |++++
T Consensus       155 L~L~~  159 (328)
T 4fcg_A          155 LSIRA  159 (328)
T ss_dssp             EEEEE
T ss_pred             EECCC
Confidence            44443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.3e-29  Score=275.31  Aligned_cols=220  Identities=22%  Similarity=0.245  Sum_probs=167.7

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceee--eeCCccccCCCCCcEE
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT--GELPSFFTNGSQLTLM  636 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L  636 (956)
                      ++|++|++++|+++ .+|..+.  ++|++|++++|++.+..+..|..+++|++|++++|.++  +..|..+..+ +|+.|
T Consensus       102 ~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L  177 (332)
T 2ft3_A          102 RKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL  177 (332)
T ss_dssp             TTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred             CCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence            45555555555555 3333332  56777777777776555556777777777777777775  3566667776 78888


Q ss_pred             ecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccc
Q 046848          637 DLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTL  716 (956)
Q Consensus       637 ~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  716 (956)
                      ++++|+++ .+|..++   ++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|          
T Consensus       178 ~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----------  243 (332)
T 2ft3_A          178 RISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL----------  243 (332)
T ss_dssp             BCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC----------
T ss_pred             ECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC----------
Confidence            88888887 5776543   688888999999888777888899999999999999988777777766665          


Q ss_pred             cccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCC
Q 046848          717 ISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQIT  796 (956)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  796 (956)
                                                               +.|+|++|+++ .+|..+..+++|+.|+|++|++++..+
T Consensus       244 -----------------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~  281 (332)
T 2ft3_A          244 -----------------------------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV  281 (332)
T ss_dssp             -----------------------------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred             -----------------------------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh
Confidence                                                     88999999998 788889999999999999999997777


Q ss_pred             ccccC------CCCCCEEECCCCccC--cCCcccccCCCCCCeEECcCCc
Q 046848          797 PKIGQ------LKSLDFLDLSRNQFF--GSIPSSLSQLSRLSVMDLSYNN  838 (956)
Q Consensus       797 ~~l~~------l~~L~~L~Ls~N~l~--~~ip~~l~~l~~L~~L~ls~N~  838 (956)
                      ..|..      ..+|+.|++++|++.  +..|..+..++.|+.+++++|+
T Consensus       282 ~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            77765      367899999999988  6788889999999999999885

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=9.1e-29  Score=271.67  Aligned_cols=220  Identities=23%  Similarity=0.245  Sum_probs=149.3

Q ss_pred             ceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceee--eeCCccccCCCCCcEEe
Q 046848          560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT--GELPSFFTNGSQLTLMD  637 (956)
Q Consensus       560 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~  637 (956)
                      +|++|++++|+++ .+|..+.  ++|++|++++|++.+..+..|.++++|++|++++|.++  +..+..+.++++|+.|+
T Consensus       101 ~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  177 (330)
T 1xku_A          101 KLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR  177 (330)
T ss_dssp             TCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred             CCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence            4444444444444 2333222  45666666666666555555666666666666666664  25566666777777777


Q ss_pred             cCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccc
Q 046848          638 LGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI  717 (956)
Q Consensus       638 Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  717 (956)
                      +++|+++ .+|..++   ++|++|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|           
T Consensus       178 l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-----------  242 (330)
T 1xku_A          178 IADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL-----------  242 (330)
T ss_dssp             CCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC-----------
T ss_pred             CCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC-----------
Confidence            7777776 5665442   577888888888877777778888888888888888877666666655555           


Q ss_pred             ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc
Q 046848          718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP  797 (956)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  797 (956)
                                                              +.|+|++|+++ .+|..+..+++|++|+|++|++++..+.
T Consensus       243 ----------------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~  281 (330)
T 1xku_A          243 ----------------------------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN  281 (330)
T ss_dssp             ----------------------------------------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             ----------------------------------------CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChh
Confidence                                                    77888888887 6777788888888888888888876666


Q ss_pred             cccC------CCCCCEEECCCCccCc--CCcccccCCCCCCeEECcCCc
Q 046848          798 KIGQ------LKSLDFLDLSRNQFFG--SIPSSLSQLSRLSVMDLSYNN  838 (956)
Q Consensus       798 ~l~~------l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~ls~N~  838 (956)
                      .|..      .+.|+.|++++|++..  ..|..|..+..++.+++++|+
T Consensus       282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             hcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            6643      3678888888888863  566788888888888888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.3e-28  Score=268.57  Aligned_cols=268  Identities=19%  Similarity=0.224  Sum_probs=160.9

Q ss_pred             CCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEE
Q 046848          366 SSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVN  445 (956)
Q Consensus       366 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  445 (956)
                      ++|++|++++|.+.+..+..+..+++|++|++++|++++..+.. +..+++|++|++++|.++......+   .+|++|+
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~  129 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLYISKNHLVEIPPNLP---SSLVELR  129 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEEECCSSCCCSCCSSCC---TTCCEEE
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEEECCCCcCCccCcccc---ccCCEEE
Confidence            34555555555555444444555555555555555555443332 4455555555555555542222111   4555556


Q ss_pred             cCCCCCCCCCchhhhcccceeEEEeeCCCCCC--CccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccc
Q 046848          446 LGSCKIGPRFPKWLRNQNQILSLDISNSGISD--TVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSN  523 (956)
Q Consensus       446 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n  523 (956)
                      +++|.+....+..+..+++|++|++++|.++.  ..+..+.. + +|++|++++|++++ +|.                 
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l-~L~~L~l~~n~l~~-l~~-----------------  189 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-L-KLNYLRISEAKLTG-IPK-----------------  189 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS-C-CCSCCBCCSSBCSS-CCS-----------------
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC-C-ccCEEECcCCCCCc-cCc-----------------
Confidence            66666555555566667777777777776643  33332222 1 45555555554442 111                 


Q ss_pred             eeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCc
Q 046848          524 QFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSI  603 (956)
Q Consensus       524 ~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  603 (956)
                                                  ...    ++|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+
T Consensus       190 ----------------------------~~~----~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~  237 (332)
T 2ft3_A          190 ----------------------------DLP----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL  237 (332)
T ss_dssp             ----------------------------SSC----SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred             ----------------------------ccc----CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh
Confidence                                        000    467777777777777766777778888888888888877777777


Q ss_pred             CCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhc------CccCcEEEccCCccc--ccCCcc
Q 046848          604 GFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEG------LVNLVVLSLKSNKFN--GSIPLQ  675 (956)
Q Consensus       604 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~------l~~L~~L~L~~N~l~--~~~p~~  675 (956)
                      ..+++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|...+..      ..+|+.|++++|++.  +..|..
T Consensus       238 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~  315 (332)
T 2ft3_A          238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT  315 (332)
T ss_dssp             GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred             hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCcccccccCccc
Confidence            77888888888888877 66777777888888888888887 454433322      356777888888776  456667


Q ss_pred             ccCCCCcCEEeccCCc
Q 046848          676 LCHLANVQILDLSSNN  691 (956)
Q Consensus       676 l~~l~~L~~L~Ls~N~  691 (956)
                      +..+++|+.+++++|+
T Consensus       316 ~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          316 FRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GTTBCCSTTEEC----
T ss_pred             ccccchhhhhhccccc
Confidence            7777888888887764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=5.9e-28  Score=265.18  Aligned_cols=138  Identities=22%  Similarity=0.285  Sum_probs=103.3

Q ss_pred             CceeEEECCCCCCCC--CCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEE
Q 046848          559 HKLDYIDLSNNLLSG--RLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLM  636 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  636 (956)
                      ++|++|++++|.++.  ..+..+..+++|++|++++|.++. +|..+.  ++|++|++++|++++..|..|..+++|+.|
T Consensus       145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  221 (330)
T 1xku_A          145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKL  221 (330)
T ss_dssp             TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred             ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            567778888887753  566777888888888888888874 555443  778888888888887777788888888888


Q ss_pred             ecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhcc
Q 046848          637 DLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFN  701 (956)
Q Consensus       637 ~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  701 (956)
                      ++++|++++..+..+. .+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.
T Consensus       222 ~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          222 GLSFNSISAVDNGSLA-NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             ECCSSCCCEECTTTGG-GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             ECCCCcCceeChhhcc-CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence            8888888754444554 6788888888888887 6777777888888888888888766555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=3.4e-28  Score=264.09  Aligned_cols=235  Identities=23%  Similarity=0.265  Sum_probs=205.1

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCccccc--CCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEE
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGK--IPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLM  636 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  636 (956)
                      +++++|++++|++++..+..|.++++|++|++++|+++..  .|..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            5789999999999865556689999999999999998733  3666778999999999999998 467779999999999


Q ss_pred             ecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCC-CcChhccccccCcccccCccc
Q 046848          637 DLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISG-IIPKCFNNFTAMTHEKGSNLT  715 (956)
Q Consensus       637 ~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~  715 (956)
                      ++++|++++..+...+..+++|++|++++|++.+..|..+..+++|++|++++|.+++ ..|..+..+++|         
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L---------  177 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL---------  177 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC---------
Confidence            9999999843332334479999999999999998888889999999999999999987 567666666555         


Q ss_pred             ccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccC
Q 046848          716 LISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQI  795 (956)
Q Consensus       716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  795 (956)
                                                                ++|+|++|++++..|..+..+++|+.|+|++|++++..
T Consensus       178 ------------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  215 (306)
T 2z66_A          178 ------------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD  215 (306)
T ss_dssp             ------------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             ------------------------------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence                                                      89999999999888999999999999999999999887


Q ss_pred             CccccCCCCCCEEECCCCccCcCCcccccCCC-CCCeEECcCCcceecCCC
Q 046848          796 TPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLS-RLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       796 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~ip~  845 (956)
                      +..+..+++|+.|||++|++++.+|..+..++ +|++|++++|+++|.++.
T Consensus       216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            88899999999999999999999999999984 899999999999998653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2.7e-28  Score=266.57  Aligned_cols=226  Identities=21%  Similarity=0.287  Sum_probs=206.1

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ..++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..+.++++|++|+|
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            68999999999998 78888899999999999999999 88999999999999999999999 78999999999999999


Q ss_pred             CCccccccCChhHh--------hcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccc
Q 046848          639 GKNGLSGEIPTWIG--------EGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEK  710 (956)
Q Consensus       639 s~N~l~~~ip~~~~--------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~  710 (956)
                      ++|++.+.+|..+.        .++++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+..+++|    
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L----  231 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL----  231 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC----
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC----
Confidence            99999989998774        14899999999999998 788899999999999999999985 55566666655    


Q ss_pred             cCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccc
Q 046848          711 GSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNT  790 (956)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  790 (956)
                                                                     ++|+|++|++.+.+|..++.+++|+.|+|++|+
T Consensus       232 -----------------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~  264 (328)
T 4fcg_A          232 -----------------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCS  264 (328)
T ss_dssp             -----------------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred             -----------------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence                                                           889999999999999999999999999999999


Q ss_pred             ccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcce
Q 046848          791 LTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLS  840 (956)
Q Consensus       791 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  840 (956)
                      +.+.+|..++.+++|+.|+|++|++.+.+|+.++++++|+.+++..|.+.
T Consensus       265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99999999999999999999999999999999999999999999977654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.2e-27  Score=274.72  Aligned_cols=233  Identities=22%  Similarity=0.222  Sum_probs=207.8

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      +++++|++++|++++..+..|.++++|+.|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            67899999999999888999999999999999999999988899999999999999999999888888999999999999


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccC-CccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSI-PLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI  717 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  717 (956)
                      ++|+++ .+|...+..+++|++|++++|+..+.+ +..+..+++|+.|+|++|++++. | .+..++             
T Consensus       155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~-------------  218 (452)
T 3zyi_A          155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLV-------------  218 (452)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCT-------------
T ss_pred             CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccc-------------
Confidence            999998 777766668999999999995444444 45688999999999999999854 3 233333             


Q ss_pred             ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc
Q 046848          718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP  797 (956)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  797 (956)
                                                            .|+.|+|++|++++..|..|.++++|+.|+|++|++++..|.
T Consensus       219 --------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  260 (452)
T 3zyi_A          219 --------------------------------------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN  260 (452)
T ss_dssp             --------------------------------------TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred             --------------------------------------cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH
Confidence                                                  448999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848          798 KIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       798 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  845 (956)
                      .|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.+..
T Consensus       261 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            999999999999999999988888899999999999999999998753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.7e-28  Score=270.56  Aligned_cols=258  Identities=21%  Similarity=0.217  Sum_probs=171.9

Q ss_pred             CCCCceeeCCCCcCccccch-hhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCE
Q 046848          533 PLNASFLNLSKNKFSGSISF-LCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQS  611 (956)
Q Consensus       533 ~~~l~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  611 (956)
                      +.+++.|++++|++++..+. +...  ++|++|++++|++++..|..|.++++|++|++++|++++..+..|+++++|++
T Consensus        51 ~~~L~~L~l~~n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  128 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYISNSDLQRC--VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF  128 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred             cccCcEEECCCCcCcccCHHHhccC--CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence            34566666666666554431 2222  56666666666666655666666666666666666666544444666666666


Q ss_pred             EEccCceeeeeCC-ccccCCCCCcEEecCCcc-ccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccC
Q 046848          612 LSLYNNRLTGELP-SFFTNGSQLTLMDLGKNG-LSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSS  689 (956)
Q Consensus       612 L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~-l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  689 (956)
                      |++++|++++..+ ..+..+++|++|++++|+ +. .++...+.++++|++|++++|++.+..|..+..+++|++|++++
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  207 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM  207 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence            6666666663333 356666666666666663 33 44332223566666666666666666666666666666666666


Q ss_pred             CcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCC
Q 046848          690 NNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGG  769 (956)
Q Consensus       690 N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  769 (956)
                      |+++...+..+.                                                   .++.|+.|++++|++++
T Consensus       208 n~l~~~~~~~~~---------------------------------------------------~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          208 KQHILLLEIFVD---------------------------------------------------VTSSVECLELRDTDLDT  236 (353)
T ss_dssp             SCSTTHHHHHHH---------------------------------------------------HTTTEEEEEEESCBCTT
T ss_pred             Cccccchhhhhh---------------------------------------------------hcccccEEECCCCcccc
Confidence            666432222222                                                   23455999999999998


Q ss_pred             CCchhhh---ccccCCEEEcccccccc----cCCccccCCCCCCEEECCCCccCcCCccc-ccCCCCCCeEECcCCccee
Q 046848          770 EVPEEIM---DLAGLIALNLSRNTLTG----QITPKIGQLKSLDFLDLSRNQFFGSIPSS-LSQLSRLSVMDLSYNNLSG  841 (956)
Q Consensus       770 ~~p~~l~---~l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g  841 (956)
                      ..+..+.   ....++.++|++|.+++    .+|+.++.+++|+.||+++|+++. +|.. |..+++|++|++++|++.|
T Consensus       237 ~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccC
Confidence            7665543   46678889999998886    478889999999999999999994 5555 6899999999999999999


Q ss_pred             cCCC
Q 046848          842 KIPS  845 (956)
Q Consensus       842 ~ip~  845 (956)
                      .+|.
T Consensus       316 ~~~~  319 (353)
T 2z80_A          316 SCPR  319 (353)
T ss_dssp             CHHH
T ss_pred             cCCC
Confidence            9874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=9e-28  Score=257.80  Aligned_cols=231  Identities=22%  Similarity=0.161  Sum_probs=203.5

Q ss_pred             ceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecC
Q 046848          560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG  639 (956)
Q Consensus       560 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  639 (956)
                      .-..++.+++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|++++..|..|.++++|++|+++
T Consensus        12 ~~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           12 PKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             SSCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence            3467888888888 456543  4689999999999998888889999999999999999998889999999999999999


Q ss_pred             Ccc-ccccC-ChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccc
Q 046848          640 KNG-LSGEI-PTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI  717 (956)
Q Consensus       640 ~N~-l~~~i-p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  717 (956)
                      +|+ +. .+ |..+. .+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|           
T Consensus        89 ~n~~l~-~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----------  155 (285)
T 1ozn_A           89 DNAQLR-SVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-----------  155 (285)
T ss_dssp             SCTTCC-CCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------
T ss_pred             CCCCcc-ccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-----------
Confidence            998 66 55 45554 79999999999999998888889999999999999999997777667766665           


Q ss_pred             ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc
Q 046848          718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP  797 (956)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  797 (956)
                                                              ++|+|++|++++..+..+..+++|+.|+|++|++++..|.
T Consensus       156 ----------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  195 (285)
T 1ozn_A          156 ----------------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH  195 (285)
T ss_dssp             ----------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ----------------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh
Confidence                                                    8899999999977777899999999999999999999899


Q ss_pred             cccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCC
Q 046848          798 KIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSG  846 (956)
Q Consensus       798 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  846 (956)
                      .++.+++|+.|++++|++++..+..+..+++|++|++++|++.|.++..
T Consensus       196 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~  244 (285)
T 1ozn_A          196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence            9999999999999999999888888999999999999999999987653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.8e-27  Score=270.62  Aligned_cols=232  Identities=23%  Similarity=0.240  Sum_probs=203.5

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ++++.|++++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            57889999999999888888999999999999999999888888999999999999999999777778999999999999


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccC-CccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSI-PLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI  717 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  717 (956)
                      ++|+++ .+|...+..+++|++|++++|+..+.+ +..+.++++|+.|++++|+++. +| .+..++             
T Consensus       144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~-------------  207 (440)
T 3zyj_A          144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLI-------------  207 (440)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCS-------------
T ss_pred             CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCc-------------
Confidence            999998 666655558999999999985544444 4578899999999999999873 33 233333             


Q ss_pred             ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc
Q 046848          718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP  797 (956)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  797 (956)
                                                            .|+.|||++|++++..|..|.++++|+.|+|++|++++..+.
T Consensus       208 --------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  249 (440)
T 3zyj_A          208 --------------------------------------KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN  249 (440)
T ss_dssp             --------------------------------------SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             --------------------------------------ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh
Confidence                                                  448999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCC
Q 046848          798 KIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIP  844 (956)
Q Consensus       798 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  844 (956)
                      .|..+++|+.|||++|++++..+..+..+++|+.|++++|++.|.+.
T Consensus       250 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            99999999999999999999888899999999999999999999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.8e-29  Score=301.38  Aligned_cols=92  Identities=13%  Similarity=0.014  Sum_probs=44.5

Q ss_pred             ccCCCCCCEEEcCCCc--ccccCCCCcC-CCCCcCEEEccCceeee-eCCccccCCCCCcEEecCCccccccCChhHhhc
Q 046848          579 WSQFDSLAILNLANNS--FFGKIPDSIG-FLKNLQSLSLYNNRLTG-ELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEG  654 (956)
Q Consensus       579 ~~~l~~L~~L~Ls~N~--l~~~~p~~~~-~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~  654 (956)
                      +.++++|+.|++++|.  +++..+..+. .+++|++|++++|++++ .++..+.++++|++|+|++|.+++.....+...
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  511 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK  511 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence            3345555555554322  3322222222 24555555555555553 233344555566666666666544333333334


Q ss_pred             CccCcEEEccCCcccc
Q 046848          655 LVNLVVLSLKSNKFNG  670 (956)
Q Consensus       655 l~~L~~L~L~~N~l~~  670 (956)
                      +++|++|++++|++++
T Consensus       512 l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          512 LPSLRYLWVQGYRASM  527 (592)
T ss_dssp             CSSCCEEEEESCBCCT
T ss_pred             cCccCeeECcCCcCCH
Confidence            5666666666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.5e-27  Score=258.94  Aligned_cols=275  Identities=23%  Similarity=0.280  Sum_probs=227.7

Q ss_pred             eeecccceeeecCCCCCCCCceeeCCCCcCccccchh-hhccCCceeEEECCCCCCCCC--CCccccCCCCCCEEEcCCC
Q 046848          517 GIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFL-CSITGHKLDYIDLSNNLLSGR--LPDCWSQFDSLAILNLANN  593 (956)
Q Consensus       517 ~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N  593 (956)
                      .++++++.++......+.+++.|++++|.++...+.. ...  ++|++|++++|.++..  .+..+..+++|++|++++|
T Consensus        11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKL--TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTC--TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhcc--ccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            3445555544433334568899999999988655433 233  7999999999999843  3677788999999999999


Q ss_pred             cccccCCCCcCCCCCcCEEEccCceeeeeCC-ccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccc-c
Q 046848          594 SFFGKIPDSIGFLKNLQSLSLYNNRLTGELP-SFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNG-S  671 (956)
Q Consensus       594 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~-~  671 (956)
                      .+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..+. ++++|++|++++|.+.+ .
T Consensus        89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGE
T ss_pred             ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCcccccc
Confidence            998 467779999999999999999997665 6899999999999999999966666665 79999999999999987 6


Q ss_pred             CCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceec
Q 046848          672 IPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQ  751 (956)
Q Consensus       672 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (956)
                      +|..+..+++|+.|++++|++++..|..+..+++|                                             
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------------------------------  201 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL---------------------------------------------  201 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC---------------------------------------------
T ss_pred             chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC---------------------------------------------
Confidence            78899999999999999999998888888776666                                             


Q ss_pred             ccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCC-CCCEEECCCCccCcCCc--ccccCCCC
Q 046848          752 STLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLK-SLDFLDLSRNQFFGSIP--SSLSQLSR  828 (956)
Q Consensus       752 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~Ls~N~l~~~ip--~~l~~l~~  828 (956)
                            +.|+|++|++++..+..+..+++|+.|+|++|++++..|..+..++ +|++|+|++|++++..+  ....-+..
T Consensus       202 ------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~  275 (306)
T 2z66_A          202 ------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD  275 (306)
T ss_dssp             ------CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHH
T ss_pred             ------CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHh
Confidence                  8999999999988888899999999999999999999999999985 99999999999987543  11223445


Q ss_pred             CCeEECcCCcceecCCCC
Q 046848          829 LSVMDLSYNNLSGKIPSG  846 (956)
Q Consensus       829 L~~L~ls~N~l~g~ip~~  846 (956)
                      .+.+.+..+.+.|..|..
T Consensus       276 ~~~~~~~~~~~~C~~p~~  293 (306)
T 2z66_A          276 QRQLLVEVERMECATPSD  293 (306)
T ss_dssp             TGGGBSCGGGCBEEESGG
T ss_pred             hhhhhccccccccCCchh
Confidence            566777888899988863

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=1.1e-28  Score=294.41  Aligned_cols=379  Identities=14%  Similarity=0.079  Sum_probs=185.6

Q ss_pred             CCCCCEEEeeccccccccchhhcC-CC-CCCEEECcCcc-CccccCHHhhhCCCCCCEEEcCCCccccccc----CCcCC
Q 046848          365 FSSLKRLSIANNRLNGTINKSVGQ-LV-KLESLFLHNNS-LRGVISEAFLSNLSNLTILYLADNSLTLEFS----HDWIP  437 (956)
Q Consensus       365 l~~L~~L~Ls~n~l~~~~~~~l~~-l~-~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~  437 (956)
                      +++|++|++++|.+++..+..+.. ++ +|++|++++|. +...........+++|++|+|++|.+++...    .....
T Consensus       111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  190 (592)
T 3ogk_B          111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH  190 (592)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred             CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence            444555555555444443333333 22 25555555543 1111111122345555555555554433211    11123


Q ss_pred             CCCcceEEcCCCCCC----CCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcC
Q 046848          438 PFQLSQVNLGSCKIG----PRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHP  513 (956)
Q Consensus       438 ~~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~  513 (956)
                      +++|+.|++++|.+.    ..++..+.++++|++|++++|.+.+ ++.. ....++|++|++++.......+....    
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~----  264 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGF-FKAAANLEEFCGGSLNEDIGMPEKYM----  264 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHH-HHHCTTCCEEEECBCCCCTTCTTSSS----
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHH-HhhhhHHHhhcccccccccchHHHHH----
Confidence            344555555555544    2334455667777777777777665 4433 33456777777765221100000000    


Q ss_pred             CCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCC
Q 046848          514 YRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANN  593 (956)
Q Consensus       514 l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  593 (956)
                                    .+. .+                         ++|+.|+++++.. +.+|..+..+++|++|++++|
T Consensus       265 --------------~l~-~~-------------------------~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~  303 (592)
T 3ogk_B          265 --------------NLV-FP-------------------------RKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYA  303 (592)
T ss_dssp             --------------CCC-CC-------------------------TTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTC
T ss_pred             --------------Hhh-cc-------------------------ccccccCccccch-hHHHHHHhhcCCCcEEecCCC
Confidence                          000 01                         4555666655422 245555666666666766666


Q ss_pred             cccccCC-CCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecC-----------CccccccCChhHhhcCccCcEE
Q 046848          594 SFFGKIP-DSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG-----------KNGLSGEIPTWIGEGLVNLVVL  661 (956)
Q Consensus       594 ~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls-----------~N~l~~~ip~~~~~~l~~L~~L  661 (956)
                      .+++... ..+..+++|++|+++++-..+.++..+..+++|++|+++           .|.+++.-...+..++++|++|
T Consensus       304 ~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L  383 (592)
T 3ogk_B          304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM  383 (592)
T ss_dssp             CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred             cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence            6543322 224566667777666332223334444556667777776           2455433233333356677777


Q ss_pred             EccCCcccccCCccccC-CCCcCEEecc----CCcCCCC-----cChhccccccCcccccCccccccccccccccccccc
Q 046848          662 SLKSNKFNGSIPLQLCH-LANVQILDLS----SNNISGI-----IPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKT  731 (956)
Q Consensus       662 ~L~~N~l~~~~p~~l~~-l~~L~~L~Ls----~N~l~~~-----~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~  731 (956)
                      +++.|++++..+..+.. +++|+.|+++    .|.+++.     ++..+.++++                          
T Consensus       384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~--------------------------  437 (592)
T 3ogk_B          384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK--------------------------  437 (592)
T ss_dssp             EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT--------------------------
T ss_pred             EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC--------------------------
Confidence            77666666655555544 6667777774    4555542     1112222222                          


Q ss_pred             ccccccceeEEecCccceecccccceeEEEcCCCC--CCCCCchhhhc-cccCCEEEcccccccc-cCCccccCCCCCCE
Q 046848          732 TKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNK--LGGEVPEEIMD-LAGLIALNLSRNTLTG-QITPKIGQLKSLDF  807 (956)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~-l~~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~  807 (956)
                                               |+.|+|++|.  +++..+..+.. +++|+.|+|++|++++ .++..+..+++|++
T Consensus       438 -------------------------L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  492 (592)
T 3ogk_B          438 -------------------------LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQK  492 (592)
T ss_dssp             -------------------------CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCE
T ss_pred             -------------------------CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCe
Confidence                                     3555555322  44444444433 5556666666666554 23333455566666


Q ss_pred             EECCCCccCcC-CcccccCCCCCCeEECcCCccee
Q 046848          808 LDLSRNQFFGS-IPSSLSQLSRLSVMDLSYNNLSG  841 (956)
Q Consensus       808 L~Ls~N~l~~~-ip~~l~~l~~L~~L~ls~N~l~g  841 (956)
                      |+|++|++++. ++..+..+++|++|++++|+++.
T Consensus       493 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             EEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             eeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            66666665433 22333445566666666666543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.7e-27  Score=254.02  Aligned_cols=235  Identities=24%  Similarity=0.275  Sum_probs=204.7

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCce-eeeeCCccccCCCCCcEEe
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR-LTGELPSFFTNGSQLTLMD  637 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~  637 (956)
                      +++++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|+ ++...|..|..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            689999999999998777889999999999999999998889999999999999999997 8877788999999999999


Q ss_pred             cCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccc
Q 046848          638 LGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI  717 (956)
Q Consensus       638 Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  717 (956)
                      +++|++++..|..+. ++++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|           
T Consensus       112 l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----------  179 (285)
T 1ozn_A          112 LDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL-----------  179 (285)
T ss_dssp             CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----------
T ss_pred             CCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc-----------
Confidence            999999955555554 79999999999999997777779999999999999999997766667766655           


Q ss_pred             ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc
Q 046848          718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP  797 (956)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  797 (956)
                                                              +.|+|++|++++..|..+..+++|+.|+|++|++++..+.
T Consensus       180 ----------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  219 (285)
T 1ozn_A          180 ----------------------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE  219 (285)
T ss_dssp             ----------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             ----------------------------------------CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence                                                    8999999999999999999999999999999999987777


Q ss_pred             cccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCC
Q 046848          798 KIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSG  846 (956)
Q Consensus       798 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  846 (956)
                      .+..+++|+.|++++|+++...+.. .-...++.++.+.|.+.|..|..
T Consensus       220 ~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          220 ALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             HHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             HcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            8999999999999999998765432 11233566678899999999864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=6.6e-28  Score=262.12  Aligned_cols=245  Identities=20%  Similarity=0.178  Sum_probs=184.4

Q ss_pred             CCceeeCCCCcCccccchhhhccCCceeEEECCCCCCC-CCCCcccc-------CCCCCCEEEcCCCcccccCCCCc--C
Q 046848          535 NASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLS-GRLPDCWS-------QFDSLAILNLANNSFFGKIPDSI--G  604 (956)
Q Consensus       535 ~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~--~  604 (956)
                      +++.+++++|.+  .+|....   ..|+.|++++|.++ ..+|..+.       ++++|++|++++|++++.+|..+  .
T Consensus        44 ~L~~l~l~~n~l--~~p~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           44 SLEYLLKRVDTE--ADLGQFT---DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             ECTTHHHHCCTT--CCCHHHH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CceeEeeccccc--ccHHHHH---HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            466667777777  3333222   23777888888873 45666554       68888888888888888888776  7


Q ss_pred             CCCCcCEEEccCceeeeeCCccccCC-----CCCcEEecCCccccccCChhHhhcCccCcEEEccCCccccc--CCccc-
Q 046848          605 FLKNLQSLSLYNNRLTGELPSFFTNG-----SQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGS--IPLQL-  676 (956)
Q Consensus       605 ~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~--~p~~l-  676 (956)
                      .+++|++|++++|++++. |..+..+     ++|++|+|++|++.+..|..+. .+++|++|++++|++.+.  .|..+ 
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHH
Confidence            888888888888888876 7777766     8888888888888855445555 688888888888887765  23344 


Q ss_pred             -cCCCCcCEEeccCCcCCCC--cC-hhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecc
Q 046848          677 -CHLANVQILDLSSNNISGI--IP-KCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQS  752 (956)
Q Consensus       677 -~~l~~L~~L~Ls~N~l~~~--~p-~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  752 (956)
                       ..+++|++|++++|++++.  ++ ..+..++                                                
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~------------------------------------------------  228 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARV------------------------------------------------  228 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC------------------------------------------------
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCC------------------------------------------------
Confidence             7888899999999988732  11 1122323                                                


Q ss_pred             cccceeEEEcCCCCCCCCCc-hhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCe
Q 046848          753 TLGLVKILDLSSNKLGGEVP-EEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSV  831 (956)
Q Consensus       753 ~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  831 (956)
                         .|++|||++|++++.+| ..+..+++|+.|+|++|+++ .+|..+.  ++|++|||++|++++. |. +..+++|++
T Consensus       229 ---~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~  300 (312)
T 1wwl_A          229 ---QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGN  300 (312)
T ss_dssp             ---CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEE
T ss_pred             ---CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCE
Confidence               34889999999998775 45667889999999999998 7888777  8899999999999876 65 888999999


Q ss_pred             EECcCCcceec
Q 046848          832 MDLSYNNLSGK  842 (956)
Q Consensus       832 L~ls~N~l~g~  842 (956)
                      |++++|++++.
T Consensus       301 L~L~~N~l~~~  311 (312)
T 1wwl_A          301 LSLKGNPFLDS  311 (312)
T ss_dssp             EECTTCTTTCC
T ss_pred             EeccCCCCCCC
Confidence            99999998763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.1e-25  Score=258.45  Aligned_cols=248  Identities=23%  Similarity=0.262  Sum_probs=215.9

Q ss_pred             eeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCccc
Q 046848          517 GIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFF  596 (956)
Q Consensus       517 ~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  596 (956)
                      .++.++..++......+.+++.|++++|++++..+..... .++|++|++++|.+++..+..|.++++|++|+|++|+++
T Consensus        58 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  136 (452)
T 3zyi_A           58 KVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT  136 (452)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             EEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCC-CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC
Confidence            4455555554433334668899999999998876543222 289999999999999988899999999999999999999


Q ss_pred             ccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccc
Q 046848          597 GKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQL  676 (956)
Q Consensus       597 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l  676 (956)
                      +..+..|..+++|++|++++|+++...+..|.++++|+.|++++|+..+.+|...+.++++|++|++++|++++ +| .+
T Consensus       137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~  214 (452)
T 3zyi_A          137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NL  214 (452)
T ss_dssp             BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CC
T ss_pred             ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cc
Confidence            88888899999999999999999988888999999999999999766668888777789999999999999985 44 58


Q ss_pred             cCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccc
Q 046848          677 CHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGL  756 (956)
Q Consensus       677 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  756 (956)
                      ..+++|+.|+|++|++++..|..|.++++|                                                  
T Consensus       215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--------------------------------------------------  244 (452)
T 3zyi_A          215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSL--------------------------------------------------  244 (452)
T ss_dssp             TTCTTCCEEECTTSCCSEECGGGGTTCTTC--------------------------------------------------
T ss_pred             cccccccEEECcCCcCcccCcccccCccCC--------------------------------------------------
Confidence            899999999999999999888888887766                                                  


Q ss_pred             eeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcC
Q 046848          757 VKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGS  818 (956)
Q Consensus       757 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  818 (956)
                       +.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++...
T Consensus       245 -~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          245 -KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             -CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             -CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence             8999999999999999999999999999999999988888899999999999999998643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.9e-26  Score=255.72  Aligned_cols=267  Identities=19%  Similarity=0.184  Sum_probs=218.4

Q ss_pred             eeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCc
Q 046848          538 FLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNN  617 (956)
Q Consensus       538 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  617 (956)
                      ..+.+++.++..+..+.    ++|++|++++|++++..+..+.++++|++|++++|++++..|..|.++++|++|++++|
T Consensus        35 ~c~~~~~~l~~iP~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (353)
T 2z80_A           35 ICKGSSGSLNSIPSGLT----EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN  110 (353)
T ss_dssp             EEECCSTTCSSCCTTCC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeeCCCCCccccccccc----ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence            45667777765544332    58999999999999777778999999999999999999888888999999999999999


Q ss_pred             eeeeeCCccccCCCCCcEEecCCccccccCCh-hHhhcCccCcEEEccCC-cccccCCccccCCCCcCEEeccCCcCCCC
Q 046848          618 RLTGELPSFFTNGSQLTLMDLGKNGLSGEIPT-WIGEGLVNLVVLSLKSN-KFNGSIPLQLCHLANVQILDLSSNNISGI  695 (956)
Q Consensus       618 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  695 (956)
                      ++++..+..|.++++|++|++++|+++ .+|. ..+..+++|++|++++| .+.+..+..+..+++|++|++++|++++.
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  189 (353)
T 2z80_A          111 YLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY  189 (353)
T ss_dssp             CCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             cCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence            999766666899999999999999998 6776 44447999999999999 47766677899999999999999999988


Q ss_pred             cChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhh
Q 046848          696 IPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEI  775 (956)
Q Consensus       696 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  775 (956)
                      .|..+..+++|                                                   ++|++++|+++...+..+
T Consensus       190 ~~~~l~~l~~L---------------------------------------------------~~L~l~~n~l~~~~~~~~  218 (353)
T 2z80_A          190 EPKSLKSIQNV---------------------------------------------------SHLILHMKQHILLLEIFV  218 (353)
T ss_dssp             CTTTTTTCSEE---------------------------------------------------EEEEEECSCSTTHHHHHH
T ss_pred             CHHHHhccccC---------------------------------------------------CeecCCCCccccchhhhh
Confidence            88877766555                                                   899999999975444445


Q ss_pred             hccccCCEEEcccccccccCCcccc---CCCCCCEEECCCCccCc----CCcccccCCCCCCeEECcCCcceecCCCC--
Q 046848          776 MDLAGLIALNLSRNTLTGQITPKIG---QLKSLDFLDLSRNQFFG----SIPSSLSQLSRLSVMDLSYNNLSGKIPSG--  846 (956)
Q Consensus       776 ~~l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~ls~N~l~g~ip~~--  846 (956)
                      ..+++|+.|+|++|++++..+..+.   ..+.++.++|++|.+++    .+|+.+..+++|++||+++|+++ .+|..  
T Consensus       219 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~  297 (353)
T 2z80_A          219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIF  297 (353)
T ss_dssp             HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHH
Confidence            6799999999999999987665544   46789999999999987    47888999999999999999999 67764  


Q ss_pred             CcCCccccccccCCC
Q 046848          847 TQLQSFSTSMYAGNE  861 (956)
Q Consensus       847 ~~~~~~~~~~~~~n~  861 (956)
                      ..+..+....+.+|.
T Consensus       298 ~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          298 DRLTSLQKIWLHTNP  312 (353)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             hcCCCCCEEEeeCCC
Confidence            355566666677773

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.3e-25  Score=256.65  Aligned_cols=247  Identities=23%  Similarity=0.245  Sum_probs=214.6

Q ss_pred             eeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCccc
Q 046848          517 GIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFF  596 (956)
Q Consensus       517 ~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  596 (956)
                      .++.+++.++......+.+++.|++++|++.+..+..... .++|++|+|++|.+++..+..|.++++|++|+|++|+++
T Consensus        47 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~  125 (440)
T 3zyj_A           47 KVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKH-LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT  125 (440)
T ss_dssp             EEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSS-CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred             EEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhC-CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence            3444444444333334667888999999888776533222 289999999999999888899999999999999999999


Q ss_pred             ccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccc
Q 046848          597 GKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQL  676 (956)
Q Consensus       597 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l  676 (956)
                      +..+..|..+++|++|++++|+++...+..|.++++|+.|+|++|+..+.++...+.++++|++|++++|+++ .+| .+
T Consensus       126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~  203 (440)
T 3zyj_A          126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NL  203 (440)
T ss_dssp             SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CC
T ss_pred             eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-cc
Confidence            8777789999999999999999998888899999999999999977666888877778999999999999998 455 58


Q ss_pred             cCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccc
Q 046848          677 CHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGL  756 (956)
Q Consensus       677 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  756 (956)
                      ..+++|+.|+|++|++++..|..|.++++|                                                  
T Consensus       204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--------------------------------------------------  233 (440)
T 3zyj_A          204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHL--------------------------------------------------  233 (440)
T ss_dssp             TTCSSCCEEECTTSCCCEECTTTTTTCTTC--------------------------------------------------
T ss_pred             CCCcccCEEECCCCccCccChhhhccCccC--------------------------------------------------
Confidence            899999999999999999888888877766                                                  


Q ss_pred             eeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCc
Q 046848          757 VKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG  817 (956)
Q Consensus       757 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  817 (956)
                       +.|+|++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++..
T Consensus       234 -~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          234 -QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             -CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             -CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence             899999999999999999999999999999999998888889999999999999999864

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=4.3e-25  Score=235.65  Aligned_cols=228  Identities=22%  Similarity=0.181  Sum_probs=187.0

Q ss_pred             EEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCcc
Q 046848          563 YIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNG  642 (956)
Q Consensus       563 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  642 (956)
                      ..+.++..++ .+|..+.  ++|++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|++++|+
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            3455555565 4555443  478889999998887777788888899999999998888777788888999999999999


Q ss_pred             ccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCC-cChhccccccCcccccCccccccccc
Q 046848          643 LSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGI-IPKCFNNFTAMTHEKGSNLTLISNYY  721 (956)
Q Consensus       643 l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~~~~~~~~~~~~~~  721 (956)
                      +++..|..+. ++++|++|++++|++.+..+..+..+++|++|++++|++++. +|..+..+++|               
T Consensus        88 l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L---------------  151 (276)
T 2z62_A           88 IQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL---------------  151 (276)
T ss_dssp             CCEECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC---------------
T ss_pred             cCccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC---------------
Confidence            8844444454 788999999999998877776788999999999999999874 57777776666               


Q ss_pred             ccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCC----EEEcccccccccCCc
Q 046848          722 TSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLI----ALNLSRNTLTGQITP  797 (956)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~ip~  797 (956)
                                                          +.|+|++|++++..+..+..+++|+    .|++++|++++..+.
T Consensus       152 ------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~  195 (276)
T 2z62_A          152 ------------------------------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG  195 (276)
T ss_dssp             ------------------------------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTT
T ss_pred             ------------------------------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcc
Confidence                                                8899999999988888888888877    899999999965555


Q ss_pred             cccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCC
Q 046848          798 KIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSG  846 (956)
Q Consensus       798 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  846 (956)
                      .+. ..+|+.|+|++|++++..+..+..+++|+.|++++|+++|.+|.-
T Consensus       196 ~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          196 AFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             SSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             ccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence            544 458999999999999887788899999999999999999999854

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=7.9e-26  Score=246.32  Aligned_cols=238  Identities=22%  Similarity=0.252  Sum_probs=191.4

Q ss_pred             eeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCc
Q 046848          538 FLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNN  617 (956)
Q Consensus       538 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  617 (956)
                      ..+++++.+...+...... .++|++|++++|++++..|..+..+++|++|++++|++++..|  +..+++|++|++++|
T Consensus        14 i~~ls~~~l~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           14 IEKVTDSSLKQALASLRQS-AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EESCCTTTHHHHHHHHHTT-GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred             EeeccccchhhhHHHHhcc-CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence            3455555554443333222 2689999999999998888899999999999999999987665  889999999999999


Q ss_pred             eeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcC
Q 046848          618 RLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIP  697 (956)
Q Consensus       618 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  697 (956)
                      ++++..     ..++|++|++++|++++ ++..   .+++|++|++++|++++..+..+..+++|+.|++++|.+++..+
T Consensus        91 ~l~~l~-----~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           91 YVQELL-----VGPSIETLHAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             EEEEEE-----ECTTCCEEECCSSCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             cccccc-----CCCCcCEEECCCCccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            998544     23899999999999984 4432   46789999999999998888889999999999999999998766


Q ss_pred             hhcc-ccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhh
Q 046848          698 KCFN-NFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIM  776 (956)
Q Consensus       698 ~~~~-~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  776 (956)
                      ..+. .++.|                                                   ++|+|++|++++. |. ..
T Consensus       162 ~~~~~~l~~L---------------------------------------------------~~L~L~~N~l~~~-~~-~~  188 (317)
T 3o53_A          162 AELAASSDTL---------------------------------------------------EHLNLQYNFIYDV-KG-QV  188 (317)
T ss_dssp             GGGGGGTTTC---------------------------------------------------CEEECTTSCCCEE-EC-CC
T ss_pred             HHHhhccCcC---------------------------------------------------CEEECCCCcCccc-cc-cc
Confidence            6553 44444                                                   8899999998855 32 33


Q ss_pred             ccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceec
Q 046848          777 DLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK  842 (956)
Q Consensus       777 ~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  842 (956)
                      .+++|+.|+|++|++++ +|+.+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++|.
T Consensus       189 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~  252 (317)
T 3o53_A          189 VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG  252 (317)
T ss_dssp             CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH
T ss_pred             ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc
Confidence            58899999999999985 5556888999999999999998 4677888889999999999999843

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=5.1e-27  Score=255.08  Aligned_cols=245  Identities=25%  Similarity=0.327  Sum_probs=204.4

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCccc-ccCCCCcC-------CCCCcCEEEccCceeeeeCCccc--c
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFF-GKIPDSIG-------FLKNLQSLSLYNNRLTGELPSFF--T  628 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~--~  628 (956)
                      ++|+.|++++|.+  .+|..+...  |+.|++++|.+. +.+|..+.       ++++|++|++++|++++.+|..+  .
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            6799999999999  778766654  899999999994 56676665       78999999999999999999876  8


Q ss_pred             CCCCCcEEecCCccccccCChhHhhcC-----ccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCc--Chhc-
Q 046848          629 NGSQLTLMDLGKNGLSGEIPTWIGEGL-----VNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGII--PKCF-  700 (956)
Q Consensus       629 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~~-  700 (956)
                      .+++|++|+|++|++++. |..+. .+     ++|++|++++|++.+..|..+..+++|++|++++|++.+.+  |..+ 
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             cCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            999999999999999965 87776 46     89999999999999888899999999999999999988653  2222 


Q ss_pred             -cccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCC--CCc-hhhh
Q 046848          701 -NNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGG--EVP-EEIM  776 (956)
Q Consensus       701 -~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p-~~l~  776 (956)
                       ..++                                                   .|++|+|++|++++  .++ ..+.
T Consensus       197 ~~~l~---------------------------------------------------~L~~L~L~~N~l~~~~~~~~~~~~  225 (312)
T 1wwl_A          197 PLKFP---------------------------------------------------TLQVLALRNAGMETPSGVCSALAA  225 (312)
T ss_dssp             TTSCT---------------------------------------------------TCCEEECTTSCCCCHHHHHHHHHH
T ss_pred             hccCC---------------------------------------------------CCCEEECCCCcCcchHHHHHHHHh
Confidence             3333                                                   44899999999984  223 3446


Q ss_pred             ccccCCEEEcccccccccCC-ccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcCCccccc
Q 046848          777 DLAGLIALNLSRNTLTGQIT-PKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTS  855 (956)
Q Consensus       777 ~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~  855 (956)
                      .+++|+.|+|++|++++.+| ..+..+++|++|+|++|+++ .+|..+.  ++|++||+++|++++. |....+..+...
T Consensus       226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L  301 (312)
T 1wwl_A          226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNL  301 (312)
T ss_dssp             TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEE
T ss_pred             cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEE
Confidence            78999999999999998875 56778999999999999999 7888776  8899999999999987 665566666666


Q ss_pred             cccCCCCCC
Q 046848          856 MYAGNELCG  864 (956)
Q Consensus       856 ~~~~n~l~~  864 (956)
                      .+.+|.+.+
T Consensus       302 ~L~~N~l~~  310 (312)
T 1wwl_A          302 SLKGNPFLD  310 (312)
T ss_dssp             ECTTCTTTC
T ss_pred             eccCCCCCC
Confidence            777776554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.3e-25  Score=258.90  Aligned_cols=218  Identities=24%  Similarity=0.250  Sum_probs=191.5

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ++|++|++++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            589999999999999888999999999999999999998766  8999999999999999996543     389999999


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhcc-ccccCcccccCccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFN-NFTAMTHEKGSNLTLI  717 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~~~~~~~~~~  717 (956)
                      ++|.+++..+.    .+++|+.|++++|.+++..|..+..+++|+.|+|++|.+++..|..+. .++.|           
T Consensus       107 ~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-----------  171 (487)
T 3oja_A          107 ANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-----------  171 (487)
T ss_dssp             CSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-----------
T ss_pred             cCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-----------
Confidence            99999954443    478999999999999998898999999999999999999998887765 45555           


Q ss_pred             ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc
Q 046848          718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP  797 (956)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  797 (956)
                                                              +.|+|++|.+++..+  ...+++|+.|+|++|++++ +|+
T Consensus       172 ----------------------------------------~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~  208 (487)
T 3oja_A          172 ----------------------------------------EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGP  208 (487)
T ss_dssp             ----------------------------------------CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECG
T ss_pred             ----------------------------------------cEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCH
Confidence                                                    899999999997633  3468999999999999996 555


Q ss_pred             cccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceec
Q 046848          798 KIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK  842 (956)
Q Consensus       798 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  842 (956)
                      .++.+++|+.|+|++|.+++ +|..+..+++|+.|++++|++.|.
T Consensus       209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred             hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence            69999999999999999996 778899999999999999999843

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1e-26  Score=253.26  Aligned_cols=222  Identities=25%  Similarity=0.278  Sum_probs=172.1

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ++|++|++++|.+++..+  +..+++|++|++++|++++..     ..++|++|++++|++++..+..   +++|+.|++
T Consensus        58 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l  127 (317)
T 3o53_A           58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYL  127 (317)
T ss_dssp             TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEEC
T ss_pred             CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEEC
Confidence            567777777777765443  777788888888888877433     2378888888888888665543   567888888


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCcccc-CCCCcCEEeccCCcCCCCcChhccccccCcccccCccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLC-HLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI  717 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  717 (956)
                      ++|++++..|..+. .+++|++|++++|++.+..+..+. .+++|++|++++|.+++..+.  ..+              
T Consensus       128 ~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l--------------  190 (317)
T 3o53_A          128 ANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVF--------------  190 (317)
T ss_dssp             CSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCC--------------
T ss_pred             CCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc--ccc--------------
Confidence            88888844444444 688888888888888877666664 688899999999988754211  112              


Q ss_pred             ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc
Q 046848          718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP  797 (956)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  797 (956)
                                                           +.|++|+|++|++++ +|..+..+++|+.|+|++|+++ .+|.
T Consensus       191 -------------------------------------~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~  231 (317)
T 3o53_A          191 -------------------------------------AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEK  231 (317)
T ss_dssp             -------------------------------------TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECT
T ss_pred             -------------------------------------ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhh
Confidence                                                 344889999999995 4556899999999999999999 5788


Q ss_pred             cccCCCCCCEEECCCCccC-cCCcccccCCCCCCeEECc-CCcceecCCCC
Q 046848          798 KIGQLKSLDFLDLSRNQFF-GSIPSSLSQLSRLSVMDLS-YNNLSGKIPSG  846 (956)
Q Consensus       798 ~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~ls-~N~l~g~ip~~  846 (956)
                      .+..+++|+.|++++|+++ +.+|..+..++.|+.++++ .+.+.|..|..
T Consensus       232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence            9999999999999999999 8888999999999999999 55677776654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=4.3e-24  Score=250.76  Aligned_cols=222  Identities=27%  Similarity=0.269  Sum_probs=158.8

Q ss_pred             CCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEE
Q 046848          534 LNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLS  613 (956)
Q Consensus       534 ~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  613 (956)
                      .+|+.|++++|++++...     ..++|++|++++|.+++ +|.   .+++|+.|++++|++++ +|..   +++|++|+
T Consensus        81 ~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~  147 (622)
T 3g06_A           81 PELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELS  147 (622)
T ss_dssp             TTCCEEEECSCCCSCCCC-----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred             CCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEE
Confidence            345555555555443222     11678888888888774 343   46778888888888874 4543   47788888


Q ss_pred             ccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCC
Q 046848          614 LYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS  693 (956)
Q Consensus       614 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  693 (956)
                      +++|++++ +|.   ..++|+.|++++|+++ .+|.    .+++|+.|++++|++++ +|..   +++|+.|++++|.++
T Consensus       148 Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~  214 (622)
T 3g06_A          148 VSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLPM----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT  214 (622)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred             CcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCcc----cCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc
Confidence            88888874 343   3467888888888887 5772    46788888888888874 4432   467888888888887


Q ss_pred             CCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCch
Q 046848          694 GIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPE  773 (956)
Q Consensus       694 ~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  773 (956)
                      . +|..+                                                      ++|+.|+|++|+|++ +| 
T Consensus       215 ~-l~~~~------------------------------------------------------~~L~~L~Ls~N~L~~-lp-  237 (622)
T 3g06_A          215 S-LPALP------------------------------------------------------SGLKELIVSGNRLTS-LP-  237 (622)
T ss_dssp             S-CCCCC------------------------------------------------------TTCCEEECCSSCCSC-CC-
T ss_pred             c-cCCCC------------------------------------------------------CCCCEEEccCCccCc-CC-
Confidence            3 33211                                                      234788899998885 55 


Q ss_pred             hhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848          774 EIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       774 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  845 (956)
                        ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|++|+++ .+|..+.++++|+.|++++|+++|.+|.
T Consensus       238 --~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          238 --VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             --CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             --CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence              45678889999999888 5666   6788899999999988 6788888889999999999999888765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2.8e-24  Score=252.34  Aligned_cols=188  Identities=27%  Similarity=0.345  Sum_probs=144.5

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ++|+.|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|+.|++++|++++ +|   ..+++|+.|++
T Consensus       121 ~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~L  188 (622)
T 3g06_A          121 SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSV  188 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEEC
Confidence            567777777777774 4443   3778888888888874 343   24678888888888884 55   45678888888


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS  718 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  718 (956)
                      ++|+++ .+|.    .+++|+.|++++|.++ .+|..   +++|+.|++++|++++ +|   ..++              
T Consensus       189 s~N~l~-~l~~----~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~--------------  241 (622)
T 3g06_A          189 SDNQLA-SLPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPS--------------  241 (622)
T ss_dssp             CSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCT--------------
T ss_pred             CCCCCC-CCCC----ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCC--------------
Confidence            888888 5665    3568888999998887 45532   4789999999998885 34   1222              


Q ss_pred             cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848          719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK  798 (956)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  798 (956)
                                                           +|+.|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..
T Consensus       242 -------------------------------------~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~  279 (622)
T 3g06_A          242 -------------------------------------ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPES  279 (622)
T ss_dssp             -------------------------------------TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGG
T ss_pred             -------------------------------------cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHH
Confidence                                                 3488999999998 4565   6788999999999999 78999


Q ss_pred             ccCCCCCCEEECCCCccCcCCcccccCCC
Q 046848          799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLS  827 (956)
Q Consensus       799 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  827 (956)
                      ++++++|+.|+|++|++++.+|..+..++
T Consensus       280 l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          280 LIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             GGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             HhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            99999999999999999999988877654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=3.7e-24  Score=227.32  Aligned_cols=206  Identities=24%  Similarity=0.294  Sum_probs=151.8

Q ss_pred             CCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEcc
Q 046848          585 LAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLK  664 (956)
Q Consensus       585 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~  664 (956)
                      .+.+++++++++ .+|..+.  +++++|++++|++++..+..|.++++|++|+|++|+++ .+|..++.++++|++|+++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence            445555555555 3443332  45666666666666555555666666666666666665 5555554456677777777


Q ss_pred             CCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEec
Q 046848          665 SNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWK  744 (956)
Q Consensus       665 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  744 (956)
                      +|++.+..+..+..+++|++|++++|++++..+..|..+++|                                      
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------------  135 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL--------------------------------------  135 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC--------------------------------------
Confidence            777765555566777788888888888877666666665555                                      


Q ss_pred             CccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCccccc
Q 046848          745 GSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLS  824 (956)
Q Consensus       745 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  824 (956)
                                   ++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+.
T Consensus       136 -------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  202 (270)
T 2o6q_A          136 -------------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD  202 (270)
T ss_dssp             -------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             -------------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhc
Confidence                         7788888888876666788899999999999999987777799999999999999999988777899


Q ss_pred             CCCCCCeEECcCCcceecCCC
Q 046848          825 QLSRLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       825 ~l~~L~~L~ls~N~l~g~ip~  845 (956)
                      .+++|+.|++++|++.|.++.
T Consensus       203 ~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          203 SLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TCTTCCEEECCSSCBCCSSSS
T ss_pred             cccCCCEEEecCCCeeCCCcc
Confidence            999999999999999998764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2e-25  Score=257.21  Aligned_cols=235  Identities=26%  Similarity=0.272  Sum_probs=200.7

Q ss_pred             CCCCceeeCCCCcCccccch-hhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCE
Q 046848          533 PLNASFLNLSKNKFSGSISF-LCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQS  611 (956)
Q Consensus       533 ~~~l~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  611 (956)
                      +.+++.|++++|.+++..+. +...  ++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~  103 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET  103 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTC--TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCC--CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence            44788899999988887653 3333  899999999999997665  8999999999999999986543     389999


Q ss_pred             EEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCcccc-CCCCcCEEeccCC
Q 046848          612 LSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLC-HLANVQILDLSSN  690 (956)
Q Consensus       612 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N  690 (956)
                      |++++|.+++..+..   +++|+.|+|++|.+++..|..+. .+++|++|+|++|.+++.+|..+. .+++|+.|+|++|
T Consensus       104 L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          104 LHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             EECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            999999999877654   57899999999999977777776 799999999999999998888886 7999999999999


Q ss_pred             cCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCC
Q 046848          691 NISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGE  770 (956)
Q Consensus       691 ~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  770 (956)
                      .+++..+.  ..+                                                   +.|+.|+|++|.+++.
T Consensus       180 ~l~~~~~~--~~l---------------------------------------------------~~L~~L~Ls~N~l~~~  206 (487)
T 3oja_A          180 FIYDVKGQ--VVF---------------------------------------------------AKLKTLDLSSNKLAFM  206 (487)
T ss_dssp             CCCEEECC--CCC---------------------------------------------------TTCCEEECCSSCCCEE
T ss_pred             cccccccc--ccC---------------------------------------------------CCCCEEECCCCCCCCC
Confidence            99866321  123                                                   3448999999999975


Q ss_pred             CchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccC-cCCcccccCCCCCCeEECc
Q 046848          771 VPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFF-GSIPSSLSQLSRLSVMDLS  835 (956)
Q Consensus       771 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~ls  835 (956)
                      .| .+..+++|+.|+|++|.+++ +|..++.+++|+.|++++|+++ +.+|..+..++.|+.++++
T Consensus       207 ~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          207 GP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            44 59999999999999999995 8888999999999999999998 7788888989888888886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=6.8e-27  Score=279.24  Aligned_cols=204  Identities=16%  Similarity=0.149  Sum_probs=103.3

Q ss_pred             CCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCC-cCCCC-cchhhHhhcccccceEEecccccccCCCccc--
Q 046848          211 KLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGN-NLTDS-IYPWLFNVSSNLVELINLGSNQLQGSIPEAF--  286 (956)
Q Consensus       211 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l--  286 (956)
                      .+++|++|++++|.+.+..+  ..+...+++|++|++++| .+.+. ++.....++. | ++|++++|.+++..+..+  
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~--~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~-L-~~L~L~~~~i~~~~~~~l~~  178 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCL--ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRN-L-KELDLRESDVDDVSGHWLSH  178 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHH--HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTT-C-CEEECTTCEEECCCGGGGGG
T ss_pred             hCCCCCeEEeeCcEEcHHHH--HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCC-C-CEEeCcCCccCCcchHHHHH
Confidence            44555555555554433222  222212355555555555 22222 2222223444 5 666666666555433333  


Q ss_pred             --CCCCCCcEEECCCCc--Ccc--ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCc------
Q 046848          287 --GHMPSLNTLFLASNQ--FRE--IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNE------  354 (956)
Q Consensus       287 --~~l~~L~~L~Ls~n~--l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~------  354 (956)
                        ..+++|++|++++|.  ++.  ++..+..+++|++|++++|...+.++..+..++      +|++|+++.+.      
T Consensus       179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~------~L~~L~l~~~~~~~~~~  252 (594)
T 2p1m_B          179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP------QLEELGTGGYTAEVRPD  252 (594)
T ss_dssp             SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT------TCSEEECSBCCCCCCHH
T ss_pred             HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC------cceEcccccccCccchh
Confidence              355677777777775  221  223334567777777777733333666666666      77777755443      


Q ss_pred             -CcccCCCCCCCCCCCEE-EeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCC
Q 046848          355 -ITGSLPNFGGFSSLKRL-SIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN  425 (956)
Q Consensus       355 -l~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  425 (956)
                       +.+..+.+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++......+..+++|++|++++|
T Consensus       253 ~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          253 VYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             hHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence             22222224555666666 2332221 2333334455666666666666554433333455666666666655

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=5.7e-26  Score=271.22  Aligned_cols=384  Identities=13%  Similarity=0.113  Sum_probs=182.7

Q ss_pred             CCCCCCEEEeeccccccccchhhc-CCCCCCEEECcCc-cCccccCHHhhhCCCCCCEEEcCCCcccccccCCc----CC
Q 046848          364 GFSSLKRLSIANNRLNGTINKSVG-QLVKLESLFLHNN-SLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDW----IP  437 (956)
Q Consensus       364 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~  437 (956)
                      .+++|++|++++|.+++..+..+. .+++|++|++++| .++.........++++|++|++++|.++......+    ..
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            345566666666666555554443 4666666666666 34332222334456666666666666554332222    23


Q ss_pred             CCCcceEEcCCCC--CCC-CCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCC
Q 046848          438 PFQLSQVNLGSCK--IGP-RFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPY  514 (956)
Q Consensus       438 ~~~L~~L~L~~n~--l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l  514 (956)
                      +++|+.|++++|.  +.. .++.....+++|++|++++|...+.++..+ ..+++|++|+++.+..              
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~--------------  247 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL-QRAPQLEELGTGGYTA--------------  247 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH-HHCTTCSEEECSBCCC--------------
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH-hcCCcceEcccccccC--------------
Confidence            4466666666665  111 112223445777777777762222233332 3445667666554321              


Q ss_pred             CCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEE-ECCCCCCCCCCCccccCCCCCCEEEcCCC
Q 046848          515 RPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYI-DLSNNLLSGRLPDCWSQFDSLAILNLANN  593 (956)
Q Consensus       515 ~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L-~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  593 (956)
                          ++..+.                     +.+..+.+...  ++|+.| .+.+... +.++..+..+++|++|++++|
T Consensus       248 ----~~~~~~---------------------~~~l~~~l~~~--~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~  299 (594)
T 2p1m_B          248 ----EVRPDV---------------------YSGLSVALSGC--KELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYA  299 (594)
T ss_dssp             ----CCCHHH---------------------HHHHHHHHHTC--TTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTC
T ss_pred             ----ccchhh---------------------HHHHHHHHhcC--CCcccccCCcccch-hhHHHHHHhhCCCCEEEccCC
Confidence                011111                     11111111111  344444 2222211 123333344556666666666


Q ss_pred             cccccC-CCCcCCCCCcCEEEccCceeee-eCCccccCCCCCcEEec---------CCccccccCChhHhhcCccCcEEE
Q 046848          594 SFFGKI-PDSIGFLKNLQSLSLYNNRLTG-ELPSFFTNGSQLTLMDL---------GKNGLSGEIPTWIGEGLVNLVVLS  662 (956)
Q Consensus       594 ~l~~~~-p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L---------s~N~l~~~ip~~~~~~l~~L~~L~  662 (956)
                      .+++.. +..+..+++|++|++++| ++. .++.....+++|+.|++         +.+.+++.....+..++++|+.|+
T Consensus       300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~  378 (594)
T 2p1m_B          300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL  378 (594)
T ss_dssp             CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence            544321 112345566666666665 321 12222234566666666         223444333333333466666666


Q ss_pred             ccCCcccccCCcccc-CCCCcCEEecc--C----CcCCCCcCh-hccccccCcccccCcccccccccccccccccccccc
Q 046848          663 LKSNKFNGSIPLQLC-HLANVQILDLS--S----NNISGIIPK-CFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKS  734 (956)
Q Consensus       663 L~~N~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  734 (956)
                      ++.|.+++..+..+. .+++|+.|+++  +    |.+++.... .+..                                
T Consensus       379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~--------------------------------  426 (594)
T 2p1m_B          379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA--------------------------------  426 (594)
T ss_dssp             EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH--------------------------------
T ss_pred             HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH--------------------------------
Confidence            666666554444443 35666666666  2    333311100 0000                                


Q ss_pred             cccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhc-cccCCEEEcccccccccCCccc-cCCCCCCEEECCC
Q 046848          735 YFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD-LAGLIALNLSRNTLTGQITPKI-GQLKSLDFLDLSR  812 (956)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~Ls~  812 (956)
                                     ....++.|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++
T Consensus       427 ---------------l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~  490 (594)
T 2p1m_B          427 ---------------IVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD  490 (594)
T ss_dssp             ---------------HHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEES
T ss_pred             ---------------HHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcC
Confidence                           001222346666655 555444444444 5666666666666655444444 4466666666666


Q ss_pred             CccCcCCcc-cccCCCCCCeEECcCCcc
Q 046848          813 NQFFGSIPS-SLSQLSRLSVMDLSYNNL  839 (956)
Q Consensus       813 N~l~~~ip~-~l~~l~~L~~L~ls~N~l  839 (956)
                      |++++..+. ....+++|++|++++|++
T Consensus       491 n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          491 CPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             CCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            666443332 223356666666666665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=6.5e-24  Score=226.48  Aligned_cols=213  Identities=25%  Similarity=0.207  Sum_probs=184.6

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      +++++|++++|++++..+..|.++++|++|++++|++.+..+..|..+++|++|++++|++++..+..|.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            57999999999999877778999999999999999999888889999999999999999999998899999999999999


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCccccc-CCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGS-IPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI  717 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  717 (956)
                      ++|++.+..+..+. .+++|++|++++|++.+. +|..+..+++|++|++++|++++..+..+..++.++.+.       
T Consensus       108 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~-------  179 (276)
T 2z62_A          108 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN-------  179 (276)
T ss_dssp             TTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC-------
T ss_pred             CCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc-------
Confidence            99999844343444 799999999999999874 689999999999999999999988877887776663210       


Q ss_pred             ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc
Q 046848          718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP  797 (956)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  797 (956)
                                                              ..|++++|++++..+..+. ..+|+.|+|++|++++..+.
T Consensus       180 ----------------------------------------l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~  218 (276)
T 2z62_A          180 ----------------------------------------LSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDG  218 (276)
T ss_dssp             ----------------------------------------EEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTT
T ss_pred             ----------------------------------------eeeecCCCcccccCccccC-CCcccEEECCCCceeecCHh
Confidence                                                    2799999999966555544 45899999999999977777


Q ss_pred             cccCCCCCCEEECCCCccCcCCc
Q 046848          798 KIGQLKSLDFLDLSRNQFFGSIP  820 (956)
Q Consensus       798 ~l~~l~~L~~L~Ls~N~l~~~ip  820 (956)
                      .++.+++|+.|+|++|++++..|
T Consensus       219 ~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          219 IFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             TTTTCCSCCEEECCSSCBCCCTT
T ss_pred             HhcccccccEEEccCCcccccCC
Confidence            78999999999999999997553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1.1e-23  Score=225.65  Aligned_cols=206  Identities=24%  Similarity=0.254  Sum_probs=174.4

Q ss_pred             ccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccC
Q 046848          579 WSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNL  658 (956)
Q Consensus       579 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  658 (956)
                      +.++++++++++++|.++ .+|..+.  ++++.|++++|++++..|..|..+++|+.|+|++|.++ .+|.. . .+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~-~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-G-TLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-S-CCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-C-CCCcC
Confidence            567778888888888887 4555543  67888888888888888888888888888888888888 45543 3 68889


Q ss_pred             cEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccc
Q 046848          659 VVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDK  738 (956)
Q Consensus       659 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  738 (956)
                      ++|++++|++. .+|..+..+++|+.|++++|++++..|..|..+++|                                
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L--------------------------------  126 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL--------------------------------  126 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence            99999999987 677788889999999999999998777777776666                                


Q ss_pred             eeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcC
Q 046848          739 AVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGS  818 (956)
Q Consensus       739 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  818 (956)
                                         ++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .
T Consensus       127 -------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~  186 (290)
T 1p9a_G          127 -------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (290)
T ss_dssp             -------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             -------------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence                               88999999999887888889999999999999999766667789999999999999999 6


Q ss_pred             CcccccCCCCCCeEECcCCcceecC
Q 046848          819 IPSSLSQLSRLSVMDLSYNNLSGKI  843 (956)
Q Consensus       819 ip~~l~~l~~L~~L~ls~N~l~g~i  843 (956)
                      +|..+..+..|+.+++++|++.|.+
T Consensus       187 ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          187 IPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cChhhcccccCCeEEeCCCCccCcC
Confidence            7888888899999999999999875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=5.8e-23  Score=218.12  Aligned_cols=206  Identities=23%  Similarity=0.291  Sum_probs=180.6

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ...+.+++++++++ .+|..+.  ++++.|++++|++++..+..|.++++|++|++++|+++...+..|.++++|++|++
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            35778999999998 4666554  67999999999999877788999999999999999999777777899999999999


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS  718 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  718 (956)
                      ++|+++ .+|...+..+++|++|++++|++++..+..+..+++|++|+|++|.+++..+..|..+++|            
T Consensus        93 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------  159 (270)
T 2o6q_A           93 TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL------------  159 (270)
T ss_dssp             CSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred             CCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc------------
Confidence            999998 6776665579999999999999998888889999999999999999997776667766665            


Q ss_pred             cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848          719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK  798 (956)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  798 (956)
                                                             +.|+|++|++++..+..|..+++|+.|+|++|++++..+..
T Consensus       160 ---------------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (270)
T 2o6q_A          160 ---------------------------------------KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA  200 (270)
T ss_dssp             ---------------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             ---------------------------------------ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence                                                   89999999999888888999999999999999999777777


Q ss_pred             ccCCCCCCEEECCCCccCcCC
Q 046848          799 IGQLKSLDFLDLSRNQFFGSI  819 (956)
Q Consensus       799 l~~l~~L~~L~Ls~N~l~~~i  819 (956)
                      +..+++|+.|+|++|++...-
T Consensus       201 ~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          201 FDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             TTTCTTCCEEECCSSCBCCSS
T ss_pred             hccccCCCEEEecCCCeeCCC
Confidence            999999999999999997654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=5.8e-24  Score=226.02  Aligned_cols=222  Identities=23%  Similarity=0.279  Sum_probs=178.1

Q ss_pred             ceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecC
Q 046848          560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG  639 (956)
Q Consensus       560 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  639 (956)
                      .+..+++..+.+.+..  ....+++|+.|++++|.+.. + ..+..+++|++|++++|++++.  ..+..+++|++|+++
T Consensus        20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred             HHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence            4455566666665432  34567788888888888763 3 3577888888888888888853  368888888889998


Q ss_pred             CccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccc
Q 046848          640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISN  719 (956)
Q Consensus       640 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  719 (956)
                      +|.++ .+|...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|             
T Consensus        94 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------  159 (272)
T 3rfs_A           94 GNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL-------------  159 (272)
T ss_dssp             TSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-------------
Confidence            88888 4554444478889999999999887777778889999999999999987777666666655             


Q ss_pred             ccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccc
Q 046848          720 YYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI  799 (956)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l  799 (956)
                                                            +.|++++|++++..+..+..+++|+.|+|++|++++..|..+
T Consensus       160 --------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (272)
T 3rfs_A          160 --------------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF  201 (272)
T ss_dssp             --------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             --------------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence                                                  889999999998888788899999999999999998888888


Q ss_pred             cCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCC
Q 046848          800 GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSG  846 (956)
Q Consensus       800 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  846 (956)
                      +.+++|+.|++++|++++..|       .|+.++++.|.++|.+|..
T Consensus       202 ~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          202 DRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred             hCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence            999999999999999886544       6888999999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=2.7e-23  Score=220.88  Aligned_cols=207  Identities=23%  Similarity=0.249  Sum_probs=182.2

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ++|+.|++++|.++. + ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|++++..+..|..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           41 NSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            789999999999874 3 3588899999999999999863  47889999999999999999888888999999999999


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS  718 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  718 (956)
                      ++|+++ .+|...+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|            
T Consensus       117 ~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------  183 (272)
T 3rfs_A          117 VENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL------------  183 (272)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred             CCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC------------
Confidence            999999 5555544479999999999999998777778999999999999999998877777776666            


Q ss_pred             cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848          719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK  798 (956)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  798 (956)
                                                             +.|+|++|++++..|..+..+++|+.|+|++|.+.+.    
T Consensus       184 ---------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----  220 (272)
T 3rfs_A          184 ---------------------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----  220 (272)
T ss_dssp             ---------------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----
T ss_pred             ---------------------------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----
Confidence                                                   8999999999998888899999999999999998854    


Q ss_pred             ccCCCCCCEEECCCCccCcCCcccccCCCC
Q 046848          799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLSR  828 (956)
Q Consensus       799 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  828 (956)
                         +++|+.|+++.|+++|.+|..++.+..
T Consensus       221 ---~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          221 ---CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             ---TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             ---CcHHHHHHHHHHhCCCcccCcccccCC
Confidence               457999999999999999998876653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2.7e-22  Score=214.69  Aligned_cols=201  Identities=22%  Similarity=0.200  Sum_probs=178.4

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ++++++++++|.++ .+|..+.  ++++.|++++|.+++..|..|..+++|++|++++|.+++..+.  ..+++|++|++
T Consensus        10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~L   84 (290)
T 1p9a_G           10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDL   84 (290)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEEC
T ss_pred             CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEEC
Confidence            67899999999998 5665553  6899999999999988888999999999999999999965443  78999999999


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS  718 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  718 (956)
                      ++|+++ .+|..+. ++++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|            
T Consensus        85 s~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------  150 (290)
T 1p9a_G           85 SHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL------------  150 (290)
T ss_dssp             CSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC------------
T ss_pred             CCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC------------
Confidence            999998 8898776 79999999999999998777889999999999999999998777777766666            


Q ss_pred             cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848          719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK  798 (956)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  798 (956)
                                                             +.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..
T Consensus       151 ---------------------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~  190 (290)
T 1p9a_G          151 ---------------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG  190 (290)
T ss_dssp             ---------------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred             ---------------------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChh
Confidence                                                   89999999999777777889999999999999999 78999


Q ss_pred             ccCCCCCCEEECCCCccCcC
Q 046848          799 IGQLKSLDFLDLSRNQFFGS  818 (956)
Q Consensus       799 l~~l~~L~~L~Ls~N~l~~~  818 (956)
                      +..+++|+.|+|++|++...
T Consensus       191 ~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          191 FFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             TTTTCCCSEEECCSCCBCCS
T ss_pred             hcccccCCeEEeCCCCccCc
Confidence            99999999999999999753

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=9.1e-23  Score=214.03  Aligned_cols=191  Identities=23%  Similarity=0.253  Sum_probs=125.8

Q ss_pred             CCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCccccc
Q 046848          632 QLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKG  711 (956)
Q Consensus       632 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~  711 (956)
                      +++.|+|++|++++..|..+. ++++|++|++++|++++..|..+..+++|++|+|++|++++..+..|..+++|     
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-----  109 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL-----  109 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-----
T ss_pred             CCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-----
Confidence            444444444444432222222 45555555555555555555556666777777777777766555555555444     


Q ss_pred             CcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccc
Q 046848          712 SNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTL  791 (956)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  791 (956)
                                                                    ++|+|++|++++..+..|..+++|+.|+|++|++
T Consensus       110 ----------------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  143 (251)
T 3m19_A          110 ----------------------------------------------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL  143 (251)
T ss_dssp             ----------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ----------------------------------------------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcC
Confidence                                                          6777777777766666678888999999999999


Q ss_pred             cccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcCCcc------ccccccCCCCCCC
Q 046848          792 TGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSF------STSMYAGNELCGL  865 (956)
Q Consensus       792 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~------~~~~~~~n~l~~~  865 (956)
                      ++..+..|+.+++|+.|+|++|++++..|..+..+++|++|++++|+++|..+....+..+      ......|+.+++.
T Consensus       144 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  223 (251)
T 3m19_A          144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHES  223 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CC
T ss_pred             CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccC
Confidence            8776778899999999999999999888888999999999999999999874432111111      1122345677888


Q ss_pred             CCCCCCCCC
Q 046848          866 PLPNKCPDE  874 (956)
Q Consensus       866 ~~~~~c~~~  874 (956)
                      |....|..+
T Consensus       224 ~~~~~C~~~  232 (251)
T 3m19_A          224 PDGVTCSDG  232 (251)
T ss_dssp             GGGCBBTTS
T ss_pred             CCcCccCCC
Confidence            877788655

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=5.2e-24  Score=236.61  Aligned_cols=256  Identities=23%  Similarity=0.260  Sum_probs=192.6

Q ss_pred             eeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCC----ccccCCC-CCCEEEcCCCcccccCCCCcCCC-----CC
Q 046848          539 LNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLP----DCWSQFD-SLAILNLANNSFFGKIPDSIGFL-----KN  608 (956)
Q Consensus       539 L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~  608 (956)
                      .+++.|.++|.++...... ++|++|++++|.+++..+    ..+..++ +|++|++++|.+.+..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIP-HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCC-CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            5677777777776654441 459999999999987766    7788888 89999999999988777766664     89


Q ss_pred             cCEEEccCceeeeeCCccc----cCC-CCCcEEecCCccccccCChhHhhc----CccCcEEEccCCcccccC----Ccc
Q 046848          609 LQSLSLYNNRLTGELPSFF----TNG-SQLTLMDLGKNGLSGEIPTWIGEG----LVNLVVLSLKSNKFNGSI----PLQ  675 (956)
Q Consensus       609 L~~L~L~~N~l~~~~p~~~----~~l-~~L~~L~Ls~N~l~~~ip~~~~~~----l~~L~~L~L~~N~l~~~~----p~~  675 (956)
                      |++|++++|++++..+..+    ..+ ++|++|+|++|++++..+..+...    .++|++|++++|++++..    +..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999999999987766644    444 899999999999986555544422    358999999999998543    344


Q ss_pred             ccCCC-CcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccc
Q 046848          676 LCHLA-NVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTL  754 (956)
Q Consensus       676 l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  754 (956)
                      +..++ +|++|+|++|++++..+..+...  +                                             ...
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~--l---------------------------------------------~~~  194 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKF--L---------------------------------------------ASI  194 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHH--H---------------------------------------------HTS
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHH--H---------------------------------------------HhC
Confidence            45565 89999999999987776555432  0                                             011


Q ss_pred             -cceeEEEcCCCCCCCC----Cchhhhcc-ccCCEEEcccccccccCC----ccccCCCCCCEEECCCCccCcCCc----
Q 046848          755 -GLVKILDLSSNKLGGE----VPEEIMDL-AGLIALNLSRNTLTGQIT----PKIGQLKSLDFLDLSRNQFFGSIP----  820 (956)
Q Consensus       755 -~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~ip----~~l~~l~~L~~L~Ls~N~l~~~ip----  820 (956)
                       +.|+.|||++|.+++.    ++..+..+ ++|++|||++|++++..+    ..+..+++|+.|+|++|.+.+..+    
T Consensus       195 ~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~  274 (362)
T 3goz_A          195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK  274 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred             CCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence             1348999999999864    45566654 589999999999987544    335677899999999999665443    


Q ss_pred             ---ccccCCCCCCeEECcCCcceec
Q 046848          821 ---SSLSQLSRLSVMDLSYNNLSGK  842 (956)
Q Consensus       821 ---~~l~~l~~L~~L~ls~N~l~g~  842 (956)
                         ..+..+++|+.||+++|++.+.
T Consensus       275 ~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          275 ALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHhccCCceEEEecCCCcCCCc
Confidence               3567788899999999998766

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=2.6e-24  Score=241.64  Aligned_cols=235  Identities=18%  Similarity=0.248  Sum_probs=189.3

Q ss_pred             CceeEEECCCCCCCCCCC----ccccCCCCCCEEEcCCC---cccccCCCCc-------CCCCCcCEEEccCceeee---
Q 046848          559 HKLDYIDLSNNLLSGRLP----DCWSQFDSLAILNLANN---SFFGKIPDSI-------GFLKNLQSLSLYNNRLTG---  621 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~L~~N~l~~---  621 (956)
                      ++|++|++++|.+++..+    ..+..+++|++|++++|   ++.+.+|..+       ..+++|++|+|++|++++   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            679999999999887533    44778899999999986   4555666554       688999999999999987   


Q ss_pred             -eCCccccCCCCCcEEecCCccccccCChhHhh---cC---------ccCcEEEccCCccc-ccCC---ccccCCCCcCE
Q 046848          622 -ELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGE---GL---------VNLVVLSLKSNKFN-GSIP---LQLCHLANVQI  684 (956)
Q Consensus       622 -~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~---~l---------~~L~~L~L~~N~l~-~~~p---~~l~~l~~L~~  684 (956)
                       .+|..+..+++|++|+|++|.+++..+..+..   .+         ++|++|++++|+++ +.+|   ..+..+++|+.
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence             57788899999999999999997544444432   23         89999999999997 4444   46778889999


Q ss_pred             EeccCCcCCC-----CcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeE
Q 046848          685 LDLSSNNISG-----IIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKI  759 (956)
Q Consensus       685 L~Ls~N~l~~-----~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  759 (956)
                      |++++|+++.     ..|..+..++                                                   .|+.
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~---------------------------------------------------~L~~  220 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQ---------------------------------------------------ELKV  220 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCT---------------------------------------------------TCCE
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCC---------------------------------------------------CccE
Confidence            9999999872     2222444433                                                   4489


Q ss_pred             EEcCCCCCC----CCCchhhhccccCCEEEccccccccc----CCcccc--CCCCCCEEECCCCccCc----CCcccc-c
Q 046848          760 LDLSSNKLG----GEVPEEIMDLAGLIALNLSRNTLTGQ----ITPKIG--QLKSLDFLDLSRNQFFG----SIPSSL-S  824 (956)
Q Consensus       760 L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~--~l~~L~~L~Ls~N~l~~----~ip~~l-~  824 (956)
                      |+|++|.++    +.+|..+..+++|+.|+|++|++++.    +|..+.  .+++|+.|+|++|++++    .+|..+ .
T Consensus       221 L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~  300 (386)
T 2ca6_A          221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE  300 (386)
T ss_dssp             EECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred             EECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh
Confidence            999999996    67888999999999999999999876    567774  49999999999999998    588887 6


Q ss_pred             CCCCCCeEECcCCcceecCC
Q 046848          825 QLSRLSVMDLSYNNLSGKIP  844 (956)
Q Consensus       825 ~l~~L~~L~ls~N~l~g~ip  844 (956)
                      ++++|++|++++|++++..|
T Consensus       301 ~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          301 KMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HCTTCCEEECTTSBSCTTSH
T ss_pred             cCCCceEEEccCCcCCcchh
Confidence            68999999999999998764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=4.1e-23  Score=224.12  Aligned_cols=202  Identities=22%  Similarity=0.163  Sum_probs=128.7

Q ss_pred             CCCCEEEcCCCcccccCCCCc--CCCCCcCEEEccCceeeeeCC----ccccCCCCCcEEecCCccccccCChhHhhcCc
Q 046848          583 DSLAILNLANNSFFGKIPDSI--GFLKNLQSLSLYNNRLTGELP----SFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLV  656 (956)
Q Consensus       583 ~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~  656 (956)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|++++..+    ..+..+++|++|+|++|++.+..|..+. .++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~  169 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR-AFP  169 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC-CCT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc-cCC
Confidence            446666666666665555555  556666666666666654333    2334556666666666666533333333 566


Q ss_pred             cCcEEEccCCccccc--C--CccccCCCCcCEEeccCCcCCCCcCh---hccccccCcccccCccccccccccccccccc
Q 046848          657 NLVVLSLKSNKFNGS--I--PLQLCHLANVQILDLSSNNISGIIPK---CFNNFTAMTHEKGSNLTLISNYYTSLAYDSL  729 (956)
Q Consensus       657 ~L~~L~L~~N~l~~~--~--p~~l~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~  729 (956)
                      +|++|++++|++.+.  +  +..+..+++|++|+|++|+++...+.   .+..++                         
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~-------------------------  224 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV-------------------------  224 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC-------------------------
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC-------------------------
Confidence            666666666665432  1  12235677788888888877532111   122333                         


Q ss_pred             ccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhcc---ccCCEEEcccccccccCCccccCCCCCC
Q 046848          730 KTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDL---AGLIALNLSRNTLTGQITPKIGQLKSLD  806 (956)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  806 (956)
                                                .|++|||++|++++.+|..+..+   ++|+.|+|++|+++ .+|..+.  ++|+
T Consensus       225 --------------------------~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~  275 (310)
T 4glp_A          225 --------------------------QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLR  275 (310)
T ss_dssp             --------------------------CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCS
T ss_pred             --------------------------CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCC
Confidence                                      33778888888887777777666   58888888888888 6777764  7888


Q ss_pred             EEECCCCccCcCCcccccCCCCCCeEECcCCccee
Q 046848          807 FLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSG  841 (956)
Q Consensus       807 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  841 (956)
                      .|||++|++++. |. +..+++|+.|++++|+++.
T Consensus       276 ~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          276 VLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             EEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            888888888864 33 5677888888888888864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=4.4e-22  Score=207.28  Aligned_cols=196  Identities=19%  Similarity=0.184  Sum_probs=130.3

Q ss_pred             CCCEEEcCCCcccccCCCCcCCCCCcCEEEccCce-eeeeCCccccCCCCCcEEecCC-ccccccCChhHhhcCccCcEE
Q 046848          584 SLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR-LTGELPSFFTNGSQLTLMDLGK-NGLSGEIPTWIGEGLVNLVVL  661 (956)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~ip~~~~~~l~~L~~L  661 (956)
                      +|++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |+++ .+|...+.++++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence            66777777777776666666677777777777775 6655556677777777777776 6666 4554444456777777


Q ss_pred             EccCCcccccCCccccCCCCcC---EEeccCC-cCCCCcChhccccccCcccccCccccccccccccccccccccccccc
Q 046848          662 SLKSNKFNGSIPLQLCHLANVQ---ILDLSSN-NISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFD  737 (956)
Q Consensus       662 ~L~~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  737 (956)
                      ++++|++++ +|. +..+++|+   .|++++| .+++..+..|..++.|                               
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-------------------------------  157 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-------------------------------  157 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence            777777764 554 66666666   7777777 7765555556555544                               


Q ss_pred             ceeEEecCccceeccccccee-EEEcCCCCCCCCCchhhhccccCCEEEccccc-ccccCCccccCC-CCCCEEECCCCc
Q 046848          738 KAVLTWKGSQYEYQSTLGLVK-ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNT-LTGQITPKIGQL-KSLDFLDLSRNQ  814 (956)
Q Consensus       738 ~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l-~~L~~L~Ls~N~  814 (956)
                                          + .|++++|+++ .+|......++|+.|+|++|+ +++..+..|..+ ++|+.||+++|+
T Consensus       158 --------------------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          158 --------------------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             --------------------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred             --------------------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence                                6 7777777777 444433333677778888884 776556677777 788888888888


Q ss_pred             cCcCCcccccCCCCCCeEECcCC
Q 046848          815 FFGSIPSSLSQLSRLSVMDLSYN  837 (956)
Q Consensus       815 l~~~ip~~l~~l~~L~~L~ls~N  837 (956)
                      +++..+.   .+++|+.|+++++
T Consensus       217 l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          217 VTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CCCCCCT---TCTTCSEEECTTC
T ss_pred             cccCChh---HhccCceeeccCc
Confidence            8744333   4566777777765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.3e-22  Score=220.04  Aligned_cols=226  Identities=20%  Similarity=0.173  Sum_probs=181.5

Q ss_pred             CceeeCCCCcCcccc-c---hhhhccCCceeEEECCCCCCCCCCCccc--cCCCCCCEEEcCCCcccccCC----CCcCC
Q 046848          536 ASFLNLSKNKFSGSI-S---FLCSITGHKLDYIDLSNNLLSGRLPDCW--SQFDSLAILNLANNSFFGKIP----DSIGF  605 (956)
Q Consensus       536 l~~L~l~~n~l~~~~-~---~~~~~~~~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~  605 (956)
                      ++.+.+.++.+.... .   .....  ++|++|++++|.+++..|..+  ..+++|++|++++|.+.+..+    ..+..
T Consensus        66 l~~l~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           66 VRRLTVGAAQVPAQLLVGALRVLAY--SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCEEEECSCCCBHHHHHHHHHHHHH--SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             eeEEEEeCCcCCHHHHHHHHHhccc--CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            456666666654321 1   11122  679999999999999999888  899999999999999997655    34567


Q ss_pred             CCCcCEEEccCceeeeeCCccccCCCCCcEEecCCcccccc--CCh-hHhhcCccCcEEEccCCcccccCCc----cccC
Q 046848          606 LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGE--IPT-WIGEGLVNLVVLSLKSNKFNGSIPL----QLCH  678 (956)
Q Consensus       606 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--ip~-~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~  678 (956)
                      +++|++|++++|++++..|..|+.+++|++|+|++|++.+.  ++. .....+++|++|++++|+++. ++.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence            99999999999999998899999999999999999998753  322 222368999999999999973 332    2578


Q ss_pred             CCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceeccccccee
Q 046848          679 LANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVK  758 (956)
Q Consensus       679 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  758 (956)
                      +++|++|+|++|++++..|..+..+..+                                                +.|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~------------------------------------------------~~L~  254 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWS------------------------------------------------SALN  254 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCC------------------------------------------------TTCC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCc------------------------------------------------CcCC
Confidence            8999999999999999888777665322                                                2348


Q ss_pred             EEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCc
Q 046848          759 ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG  817 (956)
Q Consensus       759 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  817 (956)
                      +|+|++|+++ .+|..+.  ++|+.|||++|++++. |. +..+++|+.|+|++|+++.
T Consensus       255 ~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          255 SLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             EEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            9999999999 6787775  8999999999999963 44 7889999999999999974

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=7.4e-23  Score=225.31  Aligned_cols=251  Identities=18%  Similarity=0.232  Sum_probs=176.4

Q ss_pred             CceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCccccc-CCCCcCCCCCcCEEEc
Q 046848          536 ASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGK-IPDSIGFLKNLQSLSL  614 (956)
Q Consensus       536 l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L  614 (956)
                      .+.++++++.+....  ......+.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|++
T Consensus        49 ~~~l~l~~~~~~~~~--~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           49 WQTLDLTGKNLHPDV--TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             SSEEECTTCBCCHHH--HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             heeeccccccCCHHH--HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            556667666665221  1111115788888888888876665 45678888888888887755 6777778888888888


Q ss_pred             cCceeeeeCCccccCCCCCcEEecCCc-ccccc-CChhHhhcCccCcEEEccCC-ccccc-CCccccCCC-CcCEEeccC
Q 046848          615 YNNRLTGELPSFFTNGSQLTLMDLGKN-GLSGE-IPTWIGEGLVNLVVLSLKSN-KFNGS-IPLQLCHLA-NVQILDLSS  689 (956)
Q Consensus       615 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-ip~~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~Ls~  689 (956)
                      ++|++++..+..++.+++|++|++++| .+++. +|..+. ++++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus       126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            888888777778888888888888888 56653 555454 6888888888888 77754 566677788 888888888


Q ss_pred             C--cCC-CCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCC
Q 046848          690 N--NIS-GIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNK  766 (956)
Q Consensus       690 N--~l~-~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  766 (956)
                      |  .++ +.+|..+..+++|                                                   +.|++++|.
T Consensus       205 ~~~~~~~~~l~~~~~~~~~L---------------------------------------------------~~L~l~~~~  233 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRCPNL---------------------------------------------------VHLDLSDSV  233 (336)
T ss_dssp             CGGGSCHHHHHHHHHHCTTC---------------------------------------------------SEEECTTCT
T ss_pred             CcccCCHHHHHHHHhhCCCC---------------------------------------------------CEEeCCCCC
Confidence            8  444 3344444444443                                                   788888888


Q ss_pred             -CCCCCchhhhccccCCEEEccccc-ccccCCccccCCCCCCEEECCCCccCcCCcccccCC-CCCCeEECcCCcceecC
Q 046848          767 -LGGEVPEEIMDLAGLIALNLSRNT-LTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQL-SRLSVMDLSYNNLSGKI  843 (956)
Q Consensus       767 -l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~i  843 (956)
                       +++..+..+..+++|+.|+|++|. ++......++++++|+.|++++| ++.   +.+..+ ..+..|++++|++++..
T Consensus       234 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~  309 (336)
T 2ast_B          234 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIA  309 (336)
T ss_dssp             TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTT
T ss_pred             cCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCcccc
Confidence             777777788888888888888884 33222235778888888888888 332   233333 23667778888888887


Q ss_pred             CC
Q 046848          844 PS  845 (956)
Q Consensus       844 p~  845 (956)
                      |.
T Consensus       310 ~~  311 (336)
T 2ast_B          310 RP  311 (336)
T ss_dssp             CS
T ss_pred             CC
Confidence            75

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2.1e-21  Score=209.98  Aligned_cols=194  Identities=25%  Similarity=0.417  Sum_probs=139.3

Q ss_pred             cCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCc
Q 046848          580 SQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLV  659 (956)
Q Consensus       580 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~  659 (956)
                      ..+++|+.|++++|.+.. +| .+..+++|++|++++|++++..+  +..+++|++|++++|+++ .+| .+. .+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~  110 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIK  110 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCC
T ss_pred             HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCCC
Confidence            445667777777777663 34 46667777777777777774433  777777777777777776 444 343 577788


Q ss_pred             EEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccce
Q 046848          660 VLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKA  739 (956)
Q Consensus       660 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  739 (956)
                      +|++++|++++. + .+..+++|+.|++++|++++..+  +..+++|                                 
T Consensus       111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L---------------------------------  153 (308)
T 1h6u_A          111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNL---------------------------------  153 (308)
T ss_dssp             EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC---------------------------------
T ss_pred             EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCc---------------------------------
Confidence            888888877753 3 37778888888888888875443  4444333                                 


Q ss_pred             eEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCC
Q 046848          740 VLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSI  819 (956)
Q Consensus       740 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i  819 (956)
                                        +.|+|++|++++..+  +..+++|+.|+|++|++++..+  +..+++|+.|+|++|++++..
T Consensus       154 ------------------~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          154 ------------------QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             ------------------CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred             ------------------cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc
Confidence                              778888888885433  7888888888888888875433  788888888888888888655


Q ss_pred             cccccCCCCCCeEECcCCccee
Q 046848          820 PSSLSQLSRLSVMDLSYNNLSG  841 (956)
Q Consensus       820 p~~l~~l~~L~~L~ls~N~l~g  841 (956)
                      |  +..+++|+.|++++|++++
T Consensus       212 ~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          212 P--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             G--GTTCTTCCEEEEEEEEEEC
T ss_pred             c--ccCCCCCCEEEccCCeeec
Confidence            3  7888888888888888876

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=4.1e-21  Score=207.72  Aligned_cols=192  Identities=21%  Similarity=0.347  Sum_probs=162.9

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|++++. + .+..+++|+.|++
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEEC
Confidence            689999999999984 45 58889999999999999986544  89999999999999999853 3 6899999999999


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS  718 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  718 (956)
                      ++|+++ .+|. +. .+++|++|++++|++++..+  +..+++|+.|++++|++++..+  +..+++|            
T Consensus       115 ~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L------------  175 (308)
T 1h6u_A          115 TSTQIT-DVTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKL------------  175 (308)
T ss_dssp             TTSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC------------
T ss_pred             CCCCCC-Cchh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCC------------
Confidence            999998 5665 44 79999999999999986543  8899999999999999986443  5554444            


Q ss_pred             cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848          719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK  798 (956)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  798 (956)
                                                             +.|++++|++++..+  +..+++|+.|+|++|++++..  .
T Consensus       176 ---------------------------------------~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~  212 (308)
T 1h6u_A          176 ---------------------------------------TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--P  212 (308)
T ss_dssp             ---------------------------------------CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--G
T ss_pred             ---------------------------------------CEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--c
Confidence                                                   899999999996544  889999999999999999654  3


Q ss_pred             ccCCCCCCEEECCCCccCcC
Q 046848          799 IGQLKSLDFLDLSRNQFFGS  818 (956)
Q Consensus       799 l~~l~~L~~L~Ls~N~l~~~  818 (956)
                      +..+++|+.|++++|++++.
T Consensus       213 l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          213 LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             GTTCTTCCEEEEEEEEEECC
T ss_pred             ccCCCCCCEEEccCCeeecC
Confidence            89999999999999999863

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.8e-21  Score=202.70  Aligned_cols=198  Identities=18%  Similarity=0.191  Sum_probs=171.2

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCc-ccccCCCCcCCCCCcCEEEccC-ceeeeeCCccccCCCCCcEE
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNS-FFGKIPDSIGFLKNLQSLSLYN-NRLTGELPSFFTNGSQLTLM  636 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L  636 (956)
                      +++++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            579999999999998777789999999999999997 8877777899999999999999 99998888899999999999


Q ss_pred             ecCCccccccCChhHhhcCccCc---EEEccCC-cccccCCccccCCCCcC-EEeccCCcCCCCcChhccccccCccccc
Q 046848          637 DLGKNGLSGEIPTWIGEGLVNLV---VLSLKSN-KFNGSIPLQLCHLANVQ-ILDLSSNNISGIIPKCFNNFTAMTHEKG  711 (956)
Q Consensus       637 ~Ls~N~l~~~ip~~~~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~~~~  711 (956)
                      ++++|+++ .+|. +. .+++|+   +|++++| ++++..+..+.++++|+ .|++++|+++...+..|.. +       
T Consensus       111 ~l~~n~l~-~lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~-------  179 (239)
T 2xwt_C          111 GIFNTGLK-MFPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T-------  179 (239)
T ss_dssp             EEEEECCC-SCCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C-------
T ss_pred             eCCCCCCc-cccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C-------
Confidence            99999999 5887 44 688888   9999999 99877777899999999 9999999998333333322 2       


Q ss_pred             CcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCC-CCCCCchhhhcc-ccCCEEEcccc
Q 046848          712 SNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNK-LGGEVPEEIMDL-AGLIALNLSRN  789 (956)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N  789 (956)
                                                                  .|+.|+|++|+ +++..+..|..+ ++|+.|+|++|
T Consensus       180 --------------------------------------------~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N  215 (239)
T 2xwt_C          180 --------------------------------------------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT  215 (239)
T ss_dssp             --------------------------------------------EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred             --------------------------------------------CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence                                                        34899999995 997778889999 99999999999


Q ss_pred             cccccCCccccCCCCCCEEECCCCc
Q 046848          790 TLTGQITPKIGQLKSLDFLDLSRNQ  814 (956)
Q Consensus       790 ~l~~~ip~~l~~l~~L~~L~Ls~N~  814 (956)
                      ++++ +|..  .+++|+.|+++++.
T Consensus       216 ~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          216 SVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             cccc-CChh--HhccCceeeccCcc
Confidence            9994 5654  78899999999874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=7.6e-23  Score=229.64  Aligned_cols=189  Identities=21%  Similarity=0.252  Sum_probs=141.2

Q ss_pred             cCCCCCCEEEcCCCcccc----cCCCCcCCCCCcCEEEccCceeeeeCCcc----ccCC---------CCCcEEecCCcc
Q 046848          580 SQFDSLAILNLANNSFFG----KIPDSIGFLKNLQSLSLYNNRLTGELPSF----FTNG---------SQLTLMDLGKNG  642 (956)
Q Consensus       580 ~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l---------~~L~~L~Ls~N~  642 (956)
                      ..+++|++|+|++|.+.+    .+|..+..+++|++|+|++|.++...+..    +..+         ++|++|+|++|+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            566777777777777765    35566677777777777777776433333    3333         788888888888


Q ss_pred             cc-ccCC---hhHhhcCccCcEEEccCCcccc-----cCCccccCCCCcCEEeccCCcCC----CCcChhccccccCccc
Q 046848          643 LS-GEIP---TWIGEGLVNLVVLSLKSNKFNG-----SIPLQLCHLANVQILDLSSNNIS----GIIPKCFNNFTAMTHE  709 (956)
Q Consensus       643 l~-~~ip---~~~~~~l~~L~~L~L~~N~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~~  709 (956)
                      ++ +.+|   ..+. .+++|++|++++|++..     ..|..+..+++|+.|+|++|.++    +.+|..+..+++|   
T Consensus       171 l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L---  246 (386)
T 2ca6_A          171 LENGSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL---  246 (386)
T ss_dssp             CTGGGHHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC---
T ss_pred             CCcHHHHHHHHHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc---
Confidence            86 4455   2333 57888999999988872     34447888899999999999986    4555555555544   


Q ss_pred             ccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCC----Cchhhhc--cccCCE
Q 046848          710 KGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGE----VPEEIMD--LAGLIA  783 (956)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~--l~~L~~  783 (956)
                                                                      +.|+|++|.+++.    +|..+..  +++|+.
T Consensus       247 ------------------------------------------------~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~  278 (386)
T 2ca6_A          247 ------------------------------------------------RELGLNDCLLSARGAAAVVDAFSKLENIGLQT  278 (386)
T ss_dssp             ------------------------------------------------CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred             ------------------------------------------------CEEECCCCCCchhhHHHHHHHHhhccCCCeEE
Confidence                                                            8899999999876    5666644  899999


Q ss_pred             EEcccccccc----cCCccc-cCCCCCCEEECCCCccCcCCc
Q 046848          784 LNLSRNTLTG----QITPKI-GQLKSLDFLDLSRNQFFGSIP  820 (956)
Q Consensus       784 L~Ls~N~l~~----~ip~~l-~~l~~L~~L~Ls~N~l~~~ip  820 (956)
                      |+|++|.+++    .+|..+ .++++|++|++++|++++..|
T Consensus       279 L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             EECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            9999999997    488887 668999999999999998775

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=9.2e-21  Score=198.71  Aligned_cols=180  Identities=23%  Similarity=0.242  Sum_probs=110.9

Q ss_pred             ceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecC
Q 046848          560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG  639 (956)
Q Consensus       560 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  639 (956)
                      ..++++++++.++ .+|..+.  ++++.|++++|.+.+..+..|.++++|++|++++|++++..|..|..+++|++|+|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4556666666665 3444333  355666666666655555555555555555555555555555445555555555555


Q ss_pred             CccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccc
Q 046848          640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISN  719 (956)
Q Consensus       640 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  719 (956)
                      +|++                         ++..+..+..+++|++|+|++|++++..+..|..+++|             
T Consensus        92 ~n~l-------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------------  133 (251)
T 3m19_A           92 NNQL-------------------------ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL-------------  133 (251)
T ss_dssp             TSCC-------------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCcc-------------------------cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc-------------
Confidence            5554                         44444445555666666666666665544444444444             


Q ss_pred             ccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccc
Q 046848          720 YYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI  799 (956)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l  799 (956)
                                                            +.|+|++|++++..+..|..+++|+.|+|++|++++..+..+
T Consensus       134 --------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  175 (251)
T 3m19_A          134 --------------------------------------KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF  175 (251)
T ss_dssp             --------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             --------------------------------------cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence                                                  666677777765556567777778888888888887666677


Q ss_pred             cCCCCCCEEECCCCccCcC
Q 046848          800 GQLKSLDFLDLSRNQFFGS  818 (956)
Q Consensus       800 ~~l~~L~~L~Ls~N~l~~~  818 (956)
                      ..+++|+.|+|++|++++.
T Consensus       176 ~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          176 DRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTCTTCCEEECCSCCBCTT
T ss_pred             hCCCCCCEEEeeCCceeCC
Confidence            8888888888888888765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=4.9e-22  Score=220.67  Aligned_cols=233  Identities=19%  Similarity=0.203  Sum_probs=186.9

Q ss_pred             EEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCC----CCcCCCC-CcCEEEccCceeeeeCCccccCC-----CC
Q 046848          563 YIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIP----DSIGFLK-NLQSLSLYNNRLTGELPSFFTNG-----SQ  632 (956)
Q Consensus       563 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~  632 (956)
                      .++++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|++++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46899999999999888888889999999999997766    7788888 99999999999998877777765     99


Q ss_pred             CcEEecCCccccccCChhHhh---cC-ccCcEEEccCCcccccCCccc----cC-CCCcCEEeccCCcCCCCcChhcccc
Q 046848          633 LTLMDLGKNGLSGEIPTWIGE---GL-VNLVVLSLKSNKFNGSIPLQL----CH-LANVQILDLSSNNISGIIPKCFNNF  703 (956)
Q Consensus       633 L~~L~Ls~N~l~~~ip~~~~~---~l-~~L~~L~L~~N~l~~~~p~~l----~~-l~~L~~L~Ls~N~l~~~~p~~~~~l  703 (956)
                      |++|+|++|++++..+..+..   .+ ++|++|++++|++++..+..+    .. .++|++|+|++|.+++..+..+...
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999999776665553   23 799999999999987666543    34 3699999999999986554443221


Q ss_pred             ccCcccccCcccccccccccccccccccccccccceeEEecCccceecccc-cceeEEEcCCCCCCCCCchhhhcc----
Q 046848          704 TAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTL-GLVKILDLSSNKLGGEVPEEIMDL----  778 (956)
Q Consensus       704 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l----  778 (956)
                        +                                             ... ..|++|+|++|++++..+..+...    
T Consensus       162 --l---------------------------------------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~  194 (362)
T 3goz_A          162 --L---------------------------------------------AAIPANVNSLNLRGNNLASKNCAELAKFLASI  194 (362)
T ss_dssp             --H---------------------------------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred             --H---------------------------------------------hcCCccccEeeecCCCCchhhHHHHHHHHHhC
Confidence              0                                             011 145999999999998888766544    


Q ss_pred             -ccCCEEEccccccccc----CCccccC-CCCCCEEECCCCccCcCCc----ccccCCCCCCeEECcCCcceec
Q 046848          779 -AGLIALNLSRNTLTGQ----ITPKIGQ-LKSLDFLDLSRNQFFGSIP----SSLSQLSRLSVMDLSYNNLSGK  842 (956)
Q Consensus       779 -~~L~~L~Ls~N~l~~~----ip~~l~~-l~~L~~L~Ls~N~l~~~ip----~~l~~l~~L~~L~ls~N~l~g~  842 (956)
                       ++|++|||++|++++.    ++..+.. .++|+.|||++|++++..+    ..+..+++|++|++++|.+.+.
T Consensus       195 ~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i  268 (362)
T 3goz_A          195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM  268 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred             CCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence             6999999999999873    5556666 4599999999999998766    3346778999999999996543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=2.1e-21  Score=213.64  Aligned_cols=221  Identities=20%  Similarity=0.234  Sum_probs=190.0

Q ss_pred             CceeEEECCCCCCCCCCCccccCC--CCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeee-CCccccCCCCCcE
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQF--DSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGE-LPSFFTNGSQLTL  635 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~  635 (956)
                      ..++.+++++|.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            45889999999887   5666776  8999999999999987776 55799999999999999876 8888999999999


Q ss_pred             EecCCccccccCChhHhhcCccCcEEEccCC-ccccc-CCccccCCCCcCEEeccCC-cCCCC-cChhccccc-cCcccc
Q 046848          636 MDLGKNGLSGEIPTWIGEGLVNLVVLSLKSN-KFNGS-IPLQLCHLANVQILDLSSN-NISGI-IPKCFNNFT-AMTHEK  710 (956)
Q Consensus       636 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~-~L~~~~  710 (956)
                      |+|++|.+++..|..+. .+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|    
T Consensus       123 L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L----  197 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI----  197 (336)
T ss_dssp             EECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC----
T ss_pred             EeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC----
Confidence            99999999988888887 6999999999999 67763 6777888999999999999 88764 455555555 44    


Q ss_pred             cCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCC--CCC-CCCchhhhccccCCEEEcc
Q 046848          711 GSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSN--KLG-GEVPEEIMDLAGLIALNLS  787 (956)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~-~~~p~~l~~l~~L~~L~Ls  787 (956)
                                                                     ++|++++|  .++ +.+|..+..+++|+.|+|+
T Consensus       198 -----------------------------------------------~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~  230 (336)
T 2ast_B          198 -----------------------------------------------TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS  230 (336)
T ss_dssp             -----------------------------------------------CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred             -----------------------------------------------CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence                                                           89999999  566 5678888999999999999


Q ss_pred             ccc-ccccCCccccCCCCCCEEECCCCccCcCCcc---cccCCCCCCeEECcCC
Q 046848          788 RNT-LTGQITPKIGQLKSLDFLDLSRNQFFGSIPS---SLSQLSRLSVMDLSYN  837 (956)
Q Consensus       788 ~N~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~---~l~~l~~L~~L~ls~N  837 (956)
                      +|. +++..+..++.+++|+.|++++|.  +..+.   .+..+++|++|++++|
T Consensus       231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          231 DSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEeccCc
Confidence            999 888889999999999999999996  33344   6788999999999998

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=3.2e-20  Score=215.06  Aligned_cols=189  Identities=24%  Similarity=0.379  Sum_probs=136.1

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      .+++.|++++|.+++ +|..+  +++|++|++++|+++ .+|   ..+++|++|++++|+|++ +|. +..  +|+.|+|
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            478888888888876 66544  367888888888887 566   346788888888888886 666 554  7888888


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS  718 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  718 (956)
                      ++|++++ +|.    .+++|++|++++|++++ +|.   .+++|+.|+|++|++++ +|. |.  ++|            
T Consensus       128 s~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L------------  182 (571)
T 3cvr_A          128 DNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESL------------  182 (571)
T ss_dssp             CSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTC------------
T ss_pred             CCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCC------------
Confidence            8888874 776    36788888888888875 554   46778888888888776 444 33  333            


Q ss_pred             cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccC-------CEEEcccccc
Q 046848          719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGL-------IALNLSRNTL  791 (956)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l  791 (956)
                                                             +.|+|++|+|+ .+|. +..  +|       +.|+|++|+|
T Consensus       183 ---------------------------------------~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l  219 (571)
T 3cvr_A          183 ---------------------------------------EALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI  219 (571)
T ss_dssp             ---------------------------------------CEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred             ---------------------------------------CEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence                                                   77888888887 5555 443  56       7788888888


Q ss_pred             cccCCccccCCCCCCEEECCCCccCcCCcccccCCC
Q 046848          792 TGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLS  827 (956)
Q Consensus       792 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  827 (956)
                      + .+|..+..+++|+.|+|++|++++.+|..+..+.
T Consensus       220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             C-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             e-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            7 5777777788888888888888877777776543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=5e-20  Score=187.14  Aligned_cols=139  Identities=21%  Similarity=0.242  Sum_probs=79.1

Q ss_pred             eEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCc
Q 046848          562 DYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKN  641 (956)
Q Consensus       562 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  641 (956)
                      +.++.+++.++ .+|..+  .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            35566666665 334332  346666777776666555555666666666666666666555555566666666666666


Q ss_pred             cccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccc
Q 046848          642 GLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFT  704 (956)
Q Consensus       642 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  704 (956)
                      +++ .+|...+.++++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..++
T Consensus        87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~  148 (208)
T 2o6s_A           87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT  148 (208)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence            666 44443333455666666666666544444455555666666666655544443344333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.3e-19  Score=199.93  Aligned_cols=226  Identities=21%  Similarity=0.241  Sum_probs=174.2

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCC-CCcCCCCCcCE-EEccCceeeeeCCccccCCCCCcEE
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIP-DSIGFLKNLQS-LSLYNNRLTGELPSFFTNGSQLTLM  636 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L~~N~l~~~~p~~~~~l~~L~~L  636 (956)
                      +++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++++. +.++.|+++...|..|..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            578999999999996666789999999999999999876665 56888988775 6677899998889999999999999


Q ss_pred             ecCCccccccCChhHhhcCccCcEEEccC-CcccccCCccccCCC-CcCEEeccCCcCCCCcChhccccccCcccccCcc
Q 046848          637 DLGKNGLSGEIPTWIGEGLVNLVVLSLKS-NKFNGSIPLQLCHLA-NVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNL  714 (956)
Q Consensus       637 ~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~  714 (956)
                      ++++|++. .+|...+....++..|++.+ +++....+..+..+. .++.|+|++|+|+.+.+..|.. .          
T Consensus       110 ~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~-~----------  177 (350)
T 4ay9_X          110 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG-T----------  177 (350)
T ss_dssp             EEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT-E----------
T ss_pred             cccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccc-c----------
Confidence            99999998 55554443567888899966 567655555677664 6889999999998554444322 2          


Q ss_pred             cccccccccccccccccccccccceeEEecCccceecccccceeEEEcCC-CCCCCCCchhhhccccCCEEEcccccccc
Q 046848          715 TLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSS-NKLGGEVPEEIMDLAGLIALNLSRNTLTG  793 (956)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  793 (956)
                                                               .++.+++++ |.++...+..|..+++|++|||++|+|+.
T Consensus       178 -----------------------------------------~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~  216 (350)
T 4ay9_X          178 -----------------------------------------QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS  216 (350)
T ss_dssp             -----------------------------------------EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred             -----------------------------------------chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence                                                     248899985 66664444678999999999999999994


Q ss_pred             cCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCccee
Q 046848          794 QITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSG  841 (956)
Q Consensus       794 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  841 (956)
                       +|..  .+.+|+.|.+.++.--..+| .+.++++|+.++++++.-.+
T Consensus       217 -lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~c~  260 (350)
T 4ay9_X          217 -LPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSHCC  260 (350)
T ss_dssp             -CCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHHHH
T ss_pred             -cChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCcccc
Confidence             5542  35566777766665555777 48889999999998765444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=7.8e-20  Score=211.84  Aligned_cols=183  Identities=24%  Similarity=0.372  Sum_probs=156.7

Q ss_pred             CCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEE
Q 046848          583 DSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLS  662 (956)
Q Consensus       583 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~  662 (956)
                      .+|+.|++++|.+++ +|..+  +++|++|++++|+|+ .+|   ..+++|+.|+|++|++++ +|. +. .  +|++|+
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~  126 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-A--SLKHLD  126 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-T--TCCEEE
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-c--CCCEEE
Confidence            389999999999997 77665  388999999999999 677   457999999999999995 888 54 2  999999


Q ss_pred             ccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEE
Q 046848          663 LKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLT  742 (956)
Q Consensus       663 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  742 (956)
                      +++|++++ +|.   .+++|+.|+|++|++++ +|.   .+++                                     
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~-------------------------------------  161 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTS-------------------------------------  161 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTT-------------------------------------
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCC-------------------------------------
Confidence            99999997 666   68999999999999986 444   2233                                     


Q ss_pred             ecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCC-------CEEECCCCcc
Q 046848          743 WKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSL-------DFLDLSRNQF  815 (956)
Q Consensus       743 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L-------~~L~Ls~N~l  815 (956)
                                    |+.|+|++|+|++ +|. +.  ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|
T Consensus       162 --------------L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l  219 (571)
T 3cvr_A          162 --------------LEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI  219 (571)
T ss_dssp             --------------CCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred             --------------cCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence                          3899999999997 776 66  89999999999999 7777 665  77       9999999999


Q ss_pred             CcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848          816 FGSIPSSLSQLSRLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       816 ~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  845 (956)
                      + .+|..+..+++|+.|++++|+++|.+|.
T Consensus       220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          220 T-HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             C-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             e-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            9 5888888899999999999999998875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=4.2e-20  Score=187.73  Aligned_cols=81  Identities=23%  Similarity=0.227  Sum_probs=49.3

Q ss_pred             eEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCC
Q 046848          758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYN  837 (956)
Q Consensus       758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  837 (956)
                      ++|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.+.       ++.|+.|+++.|
T Consensus       103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n  175 (208)
T 2o6s_A          103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWIN  175 (208)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHH
T ss_pred             CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHH
Confidence            5555555555544444555666666666666666655454566666666666666666543       235666666777


Q ss_pred             cceecCCC
Q 046848          838 NLSGKIPS  845 (956)
Q Consensus       838 ~l~g~ip~  845 (956)
                      .++|.+|.
T Consensus       176 ~~~g~ip~  183 (208)
T 2o6s_A          176 KHSGVVRN  183 (208)
T ss_dssp             HCTTTBBC
T ss_pred             hCCceeec
Confidence            77776665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=185.79  Aligned_cols=157  Identities=24%  Similarity=0.266  Sum_probs=134.9

Q ss_pred             cEEecCCccccccCChhHhhcCccCcEEEccCCcccccCC-ccccCCCCcCEEeccCCcCCCCcChhccccccCcccccC
Q 046848          634 TLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIP-LQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGS  712 (956)
Q Consensus       634 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  712 (956)
                      +.+++++|.++ .+|..+.   ..+++|++++|++++..| ..+..+++|+.|+|++|++++..+..|.+++.|      
T Consensus        14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------   83 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------   83 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred             CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence            46777777777 6776543   356788888888887654 457888899999999999987777777776666      


Q ss_pred             cccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccc
Q 046848          713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLT  792 (956)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  792 (956)
                                                                   ++|+|++|++++..|..|..+++|++|+|++|+++
T Consensus        84 ---------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  118 (220)
T 2v70_A           84 ---------------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT  118 (220)
T ss_dssp             ---------------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred             ---------------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC
Confidence                                                         88999999999888888999999999999999999


Q ss_pred             ccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848          793 GQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       793 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  845 (956)
                      +..|..|..+++|+.|+|++|++++..|..|..+++|++|++++|+++|.++.
T Consensus       119 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            98899999999999999999999999999999999999999999999998764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=3e-19  Score=182.59  Aligned_cols=156  Identities=24%  Similarity=0.311  Sum_probs=136.1

Q ss_pred             cEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCc
Q 046848          634 TLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSN  713 (956)
Q Consensus       634 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  713 (956)
                      +.++++++.++ .+|..+.   ++|++|++++|++++..+..+..+++|+.|+|++|++++..|..|.+++.|       
T Consensus        14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------   82 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------   82 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred             CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence            56777777777 7777543   578889999998887777788889999999999999988888888777666       


Q ss_pred             ccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccc
Q 046848          714 LTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTG  793 (956)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  793 (956)
                                                                  ++|+|++|+|++..+..|..+++|+.|+|++|++++
T Consensus        83 --------------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~  118 (220)
T 2v9t_B           83 --------------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC  118 (220)
T ss_dssp             --------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             --------------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence                                                        889999999997666778899999999999999999


Q ss_pred             cCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCC
Q 046848          794 QITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIP  844 (956)
Q Consensus       794 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  844 (956)
                      ..|..|..+++|+.|+|++|++++..+..+..+++|++|++++|++.|.++
T Consensus       119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            889999999999999999999999888889999999999999999999764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=3e-19  Score=197.09  Aligned_cols=234  Identities=18%  Similarity=0.146  Sum_probs=165.3

Q ss_pred             eEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCC-ccccCCCCCcE-EecC
Q 046848          562 DYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELP-SFFTNGSQLTL-MDLG  639 (956)
Q Consensus       562 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~-L~Ls  639 (956)
                      ++++.++++++ .+|..+  .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| .+|.++++++. +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45677778887 566655  3578888888888886666678888888888888888765554 46778877665 5666


Q ss_pred             CccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccC-CcCCCCcChhccccccCcccccCcccccc
Q 046848          640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSS-NNISGIIPKCFNNFTAMTHEKGSNLTLIS  718 (956)
Q Consensus       640 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  718 (956)
                      +|+++ .+|...+.++++|++|++++|++.+..+..+....++..|++.+ |++....+..|..+..             
T Consensus        89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~-------------  154 (350)
T 4ay9_X           89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF-------------  154 (350)
T ss_dssp             ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS-------------
T ss_pred             CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch-------------
Confidence            77787 56555555788888888888888766666666667777788765 4555443344433321             


Q ss_pred             cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccc-ccccccCC-
Q 046848          719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSR-NTLTGQIT-  796 (956)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~ip-  796 (956)
                                                           .++.|+|++|+|+ .+|.......+|+.|++++ |.++ .+| 
T Consensus       155 -------------------------------------~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~  195 (350)
T 4ay9_X          155 -------------------------------------ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPN  195 (350)
T ss_dssp             -------------------------------------SCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCT
T ss_pred             -------------------------------------hhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCH
Confidence                                                 2488999999999 4565555678899999985 6666 555 


Q ss_pred             ccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcCCcccc
Q 046848          797 PKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFST  854 (956)
Q Consensus       797 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~  854 (956)
                      ..|+.+++|++|||++|+|+...+..+.   .|+.|.+.+++--..+|.-..+..+..
T Consensus       196 ~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~l~~l~~L~~  250 (350)
T 4ay9_X          196 DVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPTLEKLVALME  250 (350)
T ss_dssp             TTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCCTTTCCSCCE
T ss_pred             HHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCCchhCcChhh
Confidence            5689999999999999999966555554   566666665555557776544554443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=1e-18  Score=180.07  Aligned_cols=157  Identities=25%  Similarity=0.266  Sum_probs=136.3

Q ss_pred             CcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccC
Q 046848          633 LTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGS  712 (956)
Q Consensus       633 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  712 (956)
                      -+.++.+++.+. .+|..+   .++|++|+|++|++++..|..+..+++|+.|+|++|++++..+..|..++.|      
T Consensus        21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------   90 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------   90 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence            456777777776 777754   3688899999999988888888899999999999999976666666666655      


Q ss_pred             cccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccc
Q 046848          713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLT  792 (956)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  792 (956)
                                                                   +.|+|++|+|++..+..|..+++|+.|+|++|+|+
T Consensus        91 ---------------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~  125 (229)
T 3e6j_A           91 ---------------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT  125 (229)
T ss_dssp             ---------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ---------------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc
Confidence                                                         88999999999877788899999999999999999


Q ss_pred             ccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848          793 GQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       793 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  845 (956)
                       .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.++.
T Consensus       126 -~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          126 -ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             -SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             -ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence             7899999999999999999999988888899999999999999999998863

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=3.8e-19  Score=197.01  Aligned_cols=179  Identities=24%  Similarity=0.216  Sum_probs=103.9

Q ss_pred             CEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCcccc-CCCCCcEEecCCccccccCChhHhhcCccCcEEEcc
Q 046848          586 AILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFT-NGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLK  664 (956)
Q Consensus       586 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~  664 (956)
                      +.+++++++++ .+|..+.  +.++.|+|++|+|++..+..|. ++++|+.|+|++|+++ .++...+.++++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence            57777777777 4565442  4577777777777766666665 6666666666666666 3333222245555555555


Q ss_pred             CCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEec
Q 046848          665 SNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWK  744 (956)
Q Consensus       665 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  744 (956)
                      +|++++..+..|..+++|+.|+|++|                                                      
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N------------------------------------------------------  122 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNN------------------------------------------------------  122 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSS------------------------------------------------------
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCC------------------------------------------------------
Confidence            55555444444444555555555554                                                      


Q ss_pred             CccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccc---cCCCCCCEEECCCCccCcCCcc
Q 046848          745 GSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI---GQLKSLDFLDLSRNQFFGSIPS  821 (956)
Q Consensus       745 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l---~~l~~L~~L~Ls~N~l~~~ip~  821 (956)
                                           +|++..|..|..+++|+.|+|++|+|++..+..|   ..+++|+.|||++|++++..+.
T Consensus       123 ---------------------~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  181 (361)
T 2xot_A          123 ---------------------HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT  181 (361)
T ss_dssp             ---------------------CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred             ---------------------cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence                                 4444445555555566666666666653222223   4566677777777777655556


Q ss_pred             cccCCCC--CCeEECcCCcceecC
Q 046848          822 SLSQLSR--LSVMDLSYNNLSGKI  843 (956)
Q Consensus       822 ~l~~l~~--L~~L~ls~N~l~g~i  843 (956)
                      .+..++.  ++.|++++|++.|.+
T Consensus       182 ~~~~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          182 DLQKLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             HHHHSCHHHHTTEECCSSCEECCH
T ss_pred             HhhhccHhhcceEEecCCCccCCc
Confidence            6666655  366777777777664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=2.1e-18  Score=176.38  Aligned_cols=137  Identities=23%  Similarity=0.217  Sum_probs=98.3

Q ss_pred             CcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccC
Q 046848          633 LTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGS  712 (956)
Q Consensus       633 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  712 (956)
                      +++|+|++|++++..|...+..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|      
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------  107 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL------  107 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC------
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC------
Confidence            34444444444433233323356666666666666665556667777777777777777777666666665555      


Q ss_pred             cccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccc
Q 046848          713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLT  792 (956)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  792 (956)
                                                                   ++|+|++|++++..|..|..+++|+.|+|++|+++
T Consensus       108 ---------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  142 (220)
T 2v70_A          108 ---------------------------------------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT  142 (220)
T ss_dssp             ---------------------------------------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred             ---------------------------------------------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence                                                         77888888888777888888888899999999998


Q ss_pred             ccCCccccCCCCCCEEECCCCccCcCCc
Q 046848          793 GQITPKIGQLKSLDFLDLSRNQFFGSIP  820 (956)
Q Consensus       793 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  820 (956)
                      +..|..|..+++|+.|+|++|++++..+
T Consensus       143 ~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          143 TVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             EECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            8888888899999999999999887654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=1.4e-18  Score=186.14  Aligned_cols=186  Identities=24%  Similarity=0.329  Sum_probs=98.5

Q ss_pred             EECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccc
Q 046848          564 IDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGL  643 (956)
Q Consensus       564 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  643 (956)
                      +.+..+.+++..+  +..+++|+.|++++|.+... + .+..+++|++|++++|++++..+  +..+++|++|++++|++
T Consensus        29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence            3444444443222  23455666666666666533 2 35556666666666666664333  55555555555555555


Q ss_pred             cccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccc
Q 046848          644 SGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTS  723 (956)
Q Consensus       644 ~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~  723 (956)
                      + .+|. +. .+++|++|++++|++++.  ..+..+++|                                         
T Consensus       103 ~-~~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L-----------------------------------------  136 (291)
T 1h6t_A          103 K-DLSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQL-----------------------------------------  136 (291)
T ss_dssp             C-CGGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTC-----------------------------------------
T ss_pred             C-CChh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCC-----------------------------------------
Confidence            5 2332 22 344444444444444421  123334444                                         


Q ss_pred             ccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCC
Q 046848          724 LAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLK  803 (956)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  803 (956)
                                                        +.|++++|++++.  ..+..+++|+.|+|++|++++..|  +..++
T Consensus       137 ----------------------------------~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~  178 (291)
T 1h6t_A          137 ----------------------------------ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT  178 (291)
T ss_dssp             ----------------------------------CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred             ----------------------------------CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCC
Confidence                                              4555555555533  345556666666666666654333  56666


Q ss_pred             CCCEEECCCCccCcCCcccccCCCCCCeEECcCCccee
Q 046848          804 SLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSG  841 (956)
Q Consensus       804 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  841 (956)
                      +|+.|++++|++++ +| .+..+++|+.|++++|++++
T Consensus       179 ~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          179 KLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             ccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            66666666666664 23 35666666666666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=3.5e-18  Score=182.90  Aligned_cols=175  Identities=24%  Similarity=0.344  Sum_probs=127.9

Q ss_pred             cCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCc
Q 046848          628 TNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMT  707 (956)
Q Consensus       628 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  707 (956)
                      ..+++|+.|++++|.+. .+|. +. .+++|++|++++|++++..+  +..+++|+.|++++|.+++. | .+..++.| 
T Consensus        43 ~~l~~L~~L~l~~~~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L-  114 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKL-  114 (291)
T ss_dssp             HHHHTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTC-
T ss_pred             hhcCcccEEEccCCCcc-cChh-Hh-cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCC-
Confidence            34555666666666665 4443 33 46677777777777765433  67777778888888777642 2 24443333 


Q ss_pred             ccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcc
Q 046848          708 HEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLS  787 (956)
Q Consensus       708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  787 (956)
                                                                        +.|+|++|++++.  ..+..+++|+.|+|+
T Consensus       115 --------------------------------------------------~~L~L~~n~i~~~--~~l~~l~~L~~L~l~  142 (291)
T 1h6t_A          115 --------------------------------------------------KSLSLEHNGISDI--NGLVHLPQLESLYLG  142 (291)
T ss_dssp             --------------------------------------------------CEEECTTSCCCCC--GGGGGCTTCCEEECC
T ss_pred             --------------------------------------------------CEEECCCCcCCCC--hhhcCCCCCCEEEcc
Confidence                                                              7888888888854  468899999999999


Q ss_pred             cccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcCCccccccccCCCCCCCCC
Q 046848          788 RNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNELCGLPL  867 (956)
Q Consensus       788 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~l~~~~~  867 (956)
                      +|++++.  +.++.+++|+.|++++|++++..|  +..+++|+.|++++|++++ +|.-..+..+....+.+|.+...|.
T Consensus       143 ~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          143 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred             CCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCcccCCcc
Confidence            9999964  689999999999999999998665  8999999999999999987 4544455566666677776555443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=2.6e-18  Score=201.50  Aligned_cols=127  Identities=28%  Similarity=0.337  Sum_probs=62.5

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      +.|+.|++++|.+.. ++ .+..+++|+.|+|++|++.+..|  +..+++|+.|+|++|++++ +| .+..+++|+.|+|
T Consensus        43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence            445555555555542 22 34555555555555555554333  4555555555555555553 22 3555555555555


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGII  696 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  696 (956)
                      ++|+++ .+|. +. .+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+++..
T Consensus       117 s~N~l~-~l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A          117 EHNGIS-DING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             TTSCCC-CCGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             cCCCCC-CCcc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence            555554 2322 22 355555555555555432  34445555555555555554433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=8.5e-18  Score=186.16  Aligned_cols=180  Identities=27%  Similarity=0.260  Sum_probs=140.9

Q ss_pred             eEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcC-CCCCcCEEEccCceeeeeCCccccCCCCCcEEecCC
Q 046848          562 DYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIG-FLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGK  640 (956)
Q Consensus       562 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  640 (956)
                      +.+++++++++ .+|..+.  +.++.|+|++|++++..+..|. ++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            57888888887 4665543  4588899999999888777787 889999999999999988888899999999999999


Q ss_pred             ccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccc
Q 046848          641 NGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNY  720 (956)
Q Consensus       641 N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~  720 (956)
                      |+++ .+|...+.++++|++|+|++|++.+..|..|..+++|+.|+|++|++++..+..|..+.                
T Consensus        98 N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~----------------  160 (361)
T 2xot_A           98 NHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN----------------  160 (361)
T ss_dssp             SCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-------------------
T ss_pred             CcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc----------------
Confidence            9988 56665555789999999999999888888899999999999999999865444442211                


Q ss_pred             cccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhcccc--CCEEEcccccccc
Q 046848          721 YTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAG--LIALNLSRNTLTG  793 (956)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~  793 (956)
                                                      .++.|+.|||++|+|++..+..+..++.  ++.|+|++|.+..
T Consensus       161 --------------------------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          161 --------------------------------KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             ---------------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             --------------------------------cCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence                                            1223478888888888766677887776  3778888888763

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=1.5e-17  Score=169.94  Aligned_cols=141  Identities=25%  Similarity=0.353  Sum_probs=122.3

Q ss_pred             eEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCc
Q 046848          562 DYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKN  641 (956)
Q Consensus       562 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  641 (956)
                      +.++++++.++ .+|..+.  ++++.|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            56888888888 5666554  68999999999999888888999999999999999999888999999999999999999


Q ss_pred             cccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccC
Q 046848          642 GLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAM  706 (956)
Q Consensus       642 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  706 (956)
                      +++ .+|..++.++++|++|+|++|++++..|..+..+++|+.|+|++|++++..+..|..+++|
T Consensus        91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  154 (220)
T 2v9t_B           91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI  154 (220)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence            998 7888776679999999999999998888889999999999999999998877777766655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=1.6e-17  Score=194.78  Aligned_cols=190  Identities=26%  Similarity=0.374  Sum_probs=130.7

Q ss_pred             eeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCC
Q 046848          561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGK  640 (956)
Q Consensus       561 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  640 (956)
                      +..+.++.+.+.+.++  +..+++|+.|++++|.+.. +| .+..+++|+.|+|++|++++..|  +..+++|+.|+|++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            4445555565554333  4566777777888777764 33 46777788888888887776544  77777888888888


Q ss_pred             ccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccc
Q 046848          641 NGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNY  720 (956)
Q Consensus       641 N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~  720 (956)
                      |+++ .+| .+. .+++|+.|+|++|++.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|              
T Consensus        97 N~l~-~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L--------------  155 (605)
T 1m9s_A           97 NKIK-DLS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL--------------  155 (605)
T ss_dssp             SCCC-CCT-TST-TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTC--------------
T ss_pred             CCCC-CCh-hhc-cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCC--------------
Confidence            8777 454 344 577788888888877752  3577777888888888877754  334444333              


Q ss_pred             cccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcccc
Q 046848          721 YTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIG  800 (956)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  800 (956)
                                                           +.|+|++|++++..|  +..+++|+.|+|++|+|++.  +.+.
T Consensus       156 -------------------------------------~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~  194 (605)
T 1m9s_A          156 -------------------------------------DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALA  194 (605)
T ss_dssp             -------------------------------------SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGT
T ss_pred             -------------------------------------CEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHc
Confidence                                                 777778887776655  77777788888888877752  3577


Q ss_pred             CCCCCCEEECCCCccCcC
Q 046848          801 QLKSLDFLDLSRNQFFGS  818 (956)
Q Consensus       801 ~l~~L~~L~Ls~N~l~~~  818 (956)
                      .+++|+.|+|++|++++.
T Consensus       195 ~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          195 GLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             TCTTCSEEECCSEEEECC
T ss_pred             cCCCCCEEEccCCcCcCC
Confidence            777788888888777765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=6.3e-18  Score=168.80  Aligned_cols=133  Identities=21%  Similarity=0.293  Sum_probs=102.5

Q ss_pred             cEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcCh-hccccccCcccccCccccccccccccccccccccccccc
Q 046848          659 VVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPK-CFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFD  737 (956)
Q Consensus       659 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  737 (956)
                      +++++++|.++ .+|..+..  +|+.|++++|++++..+. .|..++.|                               
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L-------------------------------   56 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHL-------------------------------   56 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTC-------------------------------
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCC-------------------------------
Confidence            45666666664 45544432  677777777777665553 35555444                               


Q ss_pred             ceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCc
Q 046848          738 KAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG  817 (956)
Q Consensus       738 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  817 (956)
                                          ++|+|++|+|++..|..|..+++|++|+|++|+|++..|..|+.+++|++|+|++|++++
T Consensus        57 --------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  116 (192)
T 1w8a_A           57 --------------------VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC  116 (192)
T ss_dssp             --------------------CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred             --------------------CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCe
Confidence                                778888888887778888888888889999999888888888889999999999999998


Q ss_pred             CCcccccCCCCCCeEECcCCcceecCCC
Q 046848          818 SIPSSLSQLSRLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       818 ~ip~~l~~l~~L~~L~ls~N~l~g~ip~  845 (956)
                      .+|..+..+++|++|++++|+++|.+|.
T Consensus       117 ~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A          117 VMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             ECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             eCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            8888888899999999999999988764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=1.1e-19  Score=212.18  Aligned_cols=191  Identities=23%  Similarity=0.196  Sum_probs=123.0

Q ss_pred             CCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCce-------------eeeeCCccccCCCCCcEEe-cCCcccccc
Q 046848          581 QFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR-------------LTGELPSFFTNGSQLTLMD-LGKNGLSGE  646 (956)
Q Consensus       581 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-------------l~~~~p~~~~~l~~L~~L~-Ls~N~l~~~  646 (956)
                      .+++|+.|+|++|++. .+|..++.+++|+.|++++|.             +.+..|..++++++|+.|+ ++.|.+.  
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--  423 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--  423 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence            3455566666666654 455556666666666655543             2333444444444444444 3333221  


Q ss_pred             CChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccc
Q 046848          647 IPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAY  726 (956)
Q Consensus       647 ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~  726 (956)
                                +|+.+.+++|.+....+      ..|+.|+|++|.+++ +|. ++.+++|                    
T Consensus       424 ----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L--------------------  465 (567)
T 1dce_A          424 ----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV--------------------  465 (567)
T ss_dssp             ----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC--------------------
T ss_pred             ----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC--------------------
Confidence                      12222333444442211      247788888888875 454 6555554                    


Q ss_pred             cccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCC
Q 046848          727 DSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLD  806 (956)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  806 (956)
                                                     +.|+|++|+|+ .+|..++.+++|+.|+|++|+|++ +| .++.+++|+
T Consensus       466 -------------------------------~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~  511 (567)
T 1dce_A          466 -------------------------------THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQ  511 (567)
T ss_dssp             -------------------------------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC
T ss_pred             -------------------------------cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc
Confidence                                           77888888888 678888888888888888888885 56 788888888


Q ss_pred             EEECCCCccCcCC-cccccCCCCCCeEECcCCcceecCCCC
Q 046848          807 FLDLSRNQFFGSI-PSSLSQLSRLSVMDLSYNNLSGKIPSG  846 (956)
Q Consensus       807 ~L~Ls~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g~ip~~  846 (956)
                      .|+|++|++++.+ |..+..+++|+.|++++|++++.+|..
T Consensus       512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            8888888888776 888888888888888888888776643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=2.2e-17  Score=165.81  Aligned_cols=79  Identities=18%  Similarity=0.286  Sum_probs=44.0

Q ss_pred             eEEEcCCCCCCCCCchhhhccccCCEEEccccc-ccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcC
Q 046848          758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNT-LTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSY  836 (956)
Q Consensus       758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  836 (956)
                      ++|+|++|++++..|..+..+++|+.|+|++|+ ++ .+| .++.+++|+.|++++|++++ ++ .+..+++|++|++++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence            455555555555555555556666666666665 33 343 45666666666666666654 22 455666666666666


Q ss_pred             Ccce
Q 046848          837 NNLS  840 (956)
Q Consensus       837 N~l~  840 (956)
                      |++.
T Consensus       191 N~i~  194 (197)
T 4ezg_A          191 QTIG  194 (197)
T ss_dssp             C---
T ss_pred             cccC
Confidence            6654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=9e-17  Score=165.38  Aligned_cols=154  Identities=19%  Similarity=0.147  Sum_probs=133.8

Q ss_pred             eeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCc
Q 046848          538 FLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNN  617 (956)
Q Consensus       538 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  617 (956)
                      .++.+++.+......+.    ++|++|++++|.+++..|..|..+++|+.|++++|++.+..+..|..+++|++|+|++|
T Consensus        23 ~v~c~~~~l~~ip~~~~----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGIP----TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             EEECTTSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EeEccCCCcCccCCCCC----CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            44555555544333222    68999999999999988999999999999999999998777778899999999999999


Q ss_pred             eeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcC
Q 046848          618 RLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIP  697 (956)
Q Consensus       618 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  697 (956)
                      ++++..+..|..+++|++|+|++|+++ .+|..+. .+++|++|+|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            999888888999999999999999999 9999887 79999999999999997777789999999999999999986543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.1e-17  Score=176.09  Aligned_cols=170  Identities=21%  Similarity=0.273  Sum_probs=113.4

Q ss_pred             CCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEE
Q 046848          606 LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQIL  685 (956)
Q Consensus       606 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  685 (956)
                      +.++..+++++|.+++..  .+..+++|+.|++++|.++ .+| .+. .+++|++|++++|++++..+  +..+++|+.|
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            444555556666555332  3555666666666666665 555 333 46667777777777664333  6677777777


Q ss_pred             eccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCC
Q 046848          686 DLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSN  765 (956)
Q Consensus       686 ~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  765 (956)
                      ++++|++++..+ . .. +                                                   .|+.|+|++|
T Consensus        91 ~L~~N~l~~l~~-~-~~-~---------------------------------------------------~L~~L~L~~N  116 (263)
T 1xeu_A           91 SVNRNRLKNLNG-I-PS-A---------------------------------------------------CLSRLFLDNN  116 (263)
T ss_dssp             ECCSSCCSCCTT-C-CC-S---------------------------------------------------SCCEEECCSS
T ss_pred             ECCCCccCCcCc-c-cc-C---------------------------------------------------cccEEEccCC
Confidence            777777764221 1 10 2                                                   2377788888


Q ss_pred             CCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceec
Q 046848          766 KLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK  842 (956)
Q Consensus       766 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  842 (956)
                      ++++. + .+..+++|+.|+|++|++++. + .++.+++|+.|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       117 ~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          117 ELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            77753 3 577788888888888888753 3 678888888888888888866  6677888888888888888776

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=4.2e-18  Score=205.16  Aligned_cols=183  Identities=22%  Similarity=0.268  Sum_probs=79.1

Q ss_pred             CCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccC
Q 046848          599 IPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCH  678 (956)
Q Consensus       599 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  678 (956)
                      .|+.+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+. ++++|++|+|++|+|+ .+|..+..
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcC
Confidence            3445555555555566555555 44444445555666666666555 5555554 4556666666666655 45555555


Q ss_pred             CCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceeccccccee
Q 046848          679 LANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVK  758 (956)
Q Consensus       679 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  758 (956)
                      +++|++|+|++|.|+ .+|..|+.+++|                                                   +
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L---------------------------------------------------~  319 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNL---------------------------------------------------Q  319 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTC---------------------------------------------------C
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCc---------------------------------------------------c
Confidence            566666666666554 444445444444                                                   5


Q ss_pred             EEEcCCCCCCCCCchhhhcccc-CCEEEcccccccccCCccccCCCCCCEEECCCC--------ccCcCCcccccCCCCC
Q 046848          759 ILDLSSNKLGGEVPEEIMDLAG-LIALNLSRNTLTGQITPKIGQLKSLDFLDLSRN--------QFFGSIPSSLSQLSRL  829 (956)
Q Consensus       759 ~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N--------~l~~~ip~~l~~l~~L  829 (956)
                      .|+|++|.|++.+|..+..+.. +..++|++|.+++.+|..      |+.|++++|        .+.+.++..+.++..+
T Consensus       320 ~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~  393 (727)
T 4b8c_D          320 FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKR  393 (727)
T ss_dssp             CEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------------------------------
T ss_pred             EEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhccccc
Confidence            5566666666555555544322 123556666666655543      334445544        4444444455556666


Q ss_pred             CeEECcCCcceecC
Q 046848          830 SVMDLSYNNLSGKI  843 (956)
Q Consensus       830 ~~L~ls~N~l~g~i  843 (956)
                      ....+++|-+.+..
T Consensus       394 ~~~~ls~Nil~~~~  407 (727)
T 4b8c_D          394 TFTVLSYNTLCQHY  407 (727)
T ss_dssp             --------CCCGGG
T ss_pred             ceeeeecccccccc
Confidence            66677777765443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=8e-19  Score=204.73  Aligned_cols=201  Identities=18%  Similarity=0.190  Sum_probs=138.0

Q ss_pred             CCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcC
Q 046848          604 GFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQ  683 (956)
Q Consensus       604 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  683 (956)
                      ..++.|+.|+|++|+++ .+|..++++++|+.|++++|.....+|..+            ..+.+.+.+|..+..+++|+
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll------------~~~~~~~~~~~~l~~l~~L~  412 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM------------RALDPLLYEKETLQYFSTLK  412 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------------HHHCTGGGHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH------------HhcccccCCHHHHHHHHhcc
Confidence            44666777777777776 566667777777777776554211111110            01123445566666667777


Q ss_pred             EEe-ccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEc
Q 046848          684 ILD-LSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDL  762 (956)
Q Consensus       684 ~L~-Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  762 (956)
                      .|+ ++.|.+..        ++.+.        +..+.+...                            ....|+.|+|
T Consensus       413 ~L~~l~~n~~~~--------L~~l~--------l~~n~i~~l----------------------------~~~~L~~L~L  448 (567)
T 1dce_A          413 AVDPMRAAYLDD--------LRSKF--------LLENSVLKM----------------------------EYADVRVLHL  448 (567)
T ss_dssp             HHCGGGHHHHHH--------HHHHH--------HHHHHHHHH----------------------------HHTTCSEEEC
T ss_pred             cCcchhhcccch--------hhhhh--------hhccccccc----------------------------CccCceEEEe
Confidence            776 55554431        11110        000000000                            0012488999


Q ss_pred             CCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceec
Q 046848          763 SSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK  842 (956)
Q Consensus       763 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  842 (956)
                      ++|+|++ +|. ++.+++|+.|+|++|+|+ .+|..++.+++|+.|+|++|++++ +| .++.+++|++|++++|++++.
T Consensus       449 s~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~  523 (567)
T 1dce_A          449 AHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQS  523 (567)
T ss_dssp             TTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSS
T ss_pred             cCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCC
Confidence            9999996 676 999999999999999999 899999999999999999999997 67 899999999999999999998


Q ss_pred             C-CCC-CcCCccccccccCCCCCCCC
Q 046848          843 I-PSG-TQLQSFSTSMYAGNELCGLP  866 (956)
Q Consensus       843 i-p~~-~~~~~~~~~~~~~n~l~~~~  866 (956)
                      + |.. ..+..+....+.+|.+++.|
T Consensus       524 ~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          524 AAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             STTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            6 654 45666777778888887765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=3.8e-17  Score=164.06  Aligned_cols=152  Identities=20%  Similarity=0.246  Sum_probs=91.2

Q ss_pred             CCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEE
Q 046848          606 LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQIL  685 (956)
Q Consensus       606 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  685 (956)
                      +++|++|++++|.++ .+| .+..+++|++|++++|.++ .++ .+. .+++|++|++++|++++..|..+..+++|++|
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            344444444444444 233 3444455555555555443 222 333 46666666666666666566666677777777


Q ss_pred             eccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCC
Q 046848          686 DLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSN  765 (956)
Q Consensus       686 ~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  765 (956)
                      ++++|++++..|..+..+++|                                                   +.|++++|
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L---------------------------------------------------~~L~L~~n  146 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKV---------------------------------------------------NSIDLSYN  146 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSC---------------------------------------------------CEEECCSC
T ss_pred             EecCCccCcHhHHHHhhCCCC---------------------------------------------------CEEEccCC
Confidence            777777766566655555444                                                   66777777


Q ss_pred             C-CCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCc
Q 046848          766 K-LGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG  817 (956)
Q Consensus       766 ~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  817 (956)
                      + ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus       147 ~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          147 GAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             TBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            6 44 444 57777888888888888775 33 67778888888888887753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=3.2e-17  Score=163.67  Aligned_cols=156  Identities=26%  Similarity=0.302  Sum_probs=120.6

Q ss_pred             cEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCc-cccCCCCcCEEeccCCcCCCCcChhccccccCcccccC
Q 046848          634 TLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPL-QLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGS  712 (956)
Q Consensus       634 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  712 (956)
                      +.+++++|.++ .+|..++   .+|++|++++|++.+..+. .+..+++|++|+|++|++++..|..|.+++.|      
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------   80 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence            57778888776 7777554   2788888888888766554 47888899999999999988888888776666      


Q ss_pred             cccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccc
Q 046848          713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLT  792 (956)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  792 (956)
                                                                   ++|+|++|+|++..|..|..+++|+.|+|++|+++
T Consensus        81 ---------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  115 (192)
T 1w8a_A           81 ---------------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             ---------------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             ---------------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence                                                         78999999999888888899999999999999999


Q ss_pred             ccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848          793 GQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       793 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  845 (956)
                      +.+|..++.+++|++|+|++|++++..+-..- ...++...+..+...|..|.
T Consensus       116 ~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          116 CVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             EECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSST
T ss_pred             eeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCCh
Confidence            99999999999999999999999987653210 01122334455556666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=5.9e-18  Score=203.90  Aligned_cols=194  Identities=25%  Similarity=0.271  Sum_probs=126.8

Q ss_pred             eEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCc
Q 046848          562 DYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKN  641 (956)
Q Consensus       562 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  641 (956)
                      ..++++.|.+. ..++.+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.++++|++|+|++|
T Consensus       204 ~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N  280 (727)
T 4b8c_D          204 DEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN  280 (727)
T ss_dssp             -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred             cCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence            34445555555 56788999999999999999998 67777789999999999999999 88999999999999999999


Q ss_pred             cccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccc
Q 046848          642 GLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYY  721 (956)
Q Consensus       642 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~  721 (956)
                      +|+ .+|..+. ++++|++|+|++|.++ .+|..|..+++|+.|+|++|.|++.+|..+..+...               
T Consensus       281 ~l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~---------------  342 (727)
T 4b8c_D          281 RLT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT---------------  342 (727)
T ss_dssp             CCS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH---------------
T ss_pred             cCC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh---------------
Confidence            999 9999987 7999999999999997 788889999999999999999999999887654322               


Q ss_pred             ccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccc--------cccc
Q 046848          722 TSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRN--------TLTG  793 (956)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~  793 (956)
                                                         ...++|++|.+++.+|..      |+.|++++|        .+.+
T Consensus       343 -----------------------------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~  381 (727)
T 4b8c_D          343 -----------------------------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQ  381 (727)
T ss_dssp             -----------------------------------HHHHHHHHCCCCCCCCCC---------------------------
T ss_pred             -----------------------------------hhHHhhccCcccCcCccc------cceeEeecccccccccCCccc
Confidence                                               023678889998888864      456667766        4555


Q ss_pred             cCCccccCCCCCCEEECCCCccCc
Q 046848          794 QITPKIGQLKSLDFLDLSRNQFFG  817 (956)
Q Consensus       794 ~ip~~l~~l~~L~~L~Ls~N~l~~  817 (956)
                      .++..+..+..++...+++|-+.+
T Consensus       382 ~~~~~~~~l~~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          382 STEHLATDLAKRTFTVLSYNTLCQ  405 (727)
T ss_dssp             --------------------CCCG
T ss_pred             cccchhhcccccceeeeecccccc
Confidence            555566677777888888888763

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=1.4e-17  Score=175.27  Aligned_cols=123  Identities=20%  Similarity=0.329  Sum_probs=72.2

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      .++..+++++|.+++..  .+..+++|+.|++++|.++. +| .+..+++|++|++++|++++..+  +..+++|+.|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            34566667777776432  45667777777777777763 34 56667777777777777764433  666666666666


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCC
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS  693 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  693 (956)
                      ++|+++ .+|...  . ++|++|++++|++++. + .+..+++|+.|++++|+++
T Consensus        93 ~~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           93 NRNRLK-NLNGIP--S-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             CSSCCS-CCTTCC--C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCC
T ss_pred             CCCccC-CcCccc--c-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCC
Confidence            666666 344321  1 4555555555555432 2 3445555555555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=1.3e-15  Score=151.75  Aligned_cols=131  Identities=24%  Similarity=0.344  Sum_probs=105.3

Q ss_pred             cEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccc
Q 046848          659 VVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDK  738 (956)
Q Consensus       659 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  738 (956)
                      +++++++|.++ .+|..+.  ++|+.|++++|+++ .+|..|.+++.|                                
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L--------------------------------   56 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL--------------------------------   56 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence            45666666665 4454432  46777888888776 555666555554                                


Q ss_pred             eeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcC
Q 046848          739 AVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGS  818 (956)
Q Consensus       739 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  818 (956)
                                         +.|+|++|+|++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|++++.
T Consensus        57 -------------------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~  117 (193)
T 2wfh_A           57 -------------------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV  117 (193)
T ss_dssp             -------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             -------------------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCee
Confidence                               7788888888877778888999999999999999988888899999999999999999987


Q ss_pred             CcccccCCCCCCeEECcCCcceecCC
Q 046848          819 IPSSLSQLSRLSVMDLSYNNLSGKIP  844 (956)
Q Consensus       819 ip~~l~~l~~L~~L~ls~N~l~g~ip  844 (956)
                      .+..|..+++|+.|++++|++.|.+.
T Consensus       118 ~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A          118 PEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             ChhhhhcCccccEEEeCCCCeecCCc
Confidence            77789999999999999999999865

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=2.9e-15  Score=147.50  Aligned_cols=134  Identities=22%  Similarity=0.254  Sum_probs=100.2

Q ss_pred             CcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccccccccccccccccc
Q 046848          658 LVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFD  737 (956)
Q Consensus       658 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  737 (956)
                      .+.+++++|+++ .+|..+  .++|+.|++++|++++..+..|..++.|                               
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L-------------------------------   54 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQL-------------------------------   54 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccc-------------------------------
Confidence            345555555555 334332  2567777777777766555555555444                               


Q ss_pred             ceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCc
Q 046848          738 KAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG  817 (956)
Q Consensus       738 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  817 (956)
                                          ++|+|++|++++..+..+..+++|++|+|++|++++..+..++.+++|++|++++|++++
T Consensus        55 --------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  114 (177)
T 2o6r_A           55 --------------------TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS  114 (177)
T ss_dssp             --------------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             --------------------cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE
Confidence                                677777777776666667888889999999999987777778899999999999999997


Q ss_pred             CCcccccCCCCCCeEECcCCcceecCCC
Q 046848          818 SIPSSLSQLSRLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       818 ~ip~~l~~l~~L~~L~ls~N~l~g~ip~  845 (956)
                      ..+..+..+++|++|++++|++.|.+|.
T Consensus       115 ~~~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A          115 VPDGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             eCHHHhcCCcccCEEEecCCCeeccCcc
Confidence            7777778899999999999999998773

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=1.1e-15  Score=166.92  Aligned_cols=219  Identities=15%  Similarity=0.114  Sum_probs=135.8

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCcee----eeeCCccccCCCCCc
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRL----TGELPSFFTNGSQLT  634 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l----~~~~p~~~~~l~~L~  634 (956)
                      ++|+.+++.+ .++...+.+|.+|++|+.+++++|.+....+.+|.++.++..+....+..    ....+.+|.++..|+
T Consensus       101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~  179 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE  179 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred             CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence            5566666665 55544455566666666666666666555555566555555555444221    112233444555555


Q ss_pred             -EEecCCccccccCChhHhhc---CccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccc
Q 046848          635 -LMDLGKNGLSGEIPTWIGEG---LVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEK  710 (956)
Q Consensus       635 -~L~Ls~N~l~~~ip~~~~~~---l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~  710 (956)
                       .+++...   +.++..++..   ..+++.+.+.++-...........+++|+.++|++|+++.+.+.+|.++++|    
T Consensus       180 ~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L----  252 (329)
T 3sb4_A          180 TTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL----  252 (329)
T ss_dssp             EEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC----
T ss_pred             eeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC----
Confidence             3444322   2334433322   3455555555442221111111236788888888888886666677777666    


Q ss_pred             cCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCC-EEEcccc
Q 046848          711 GSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLI-ALNLSRN  789 (956)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N  789 (956)
                                                                     +.|+|++| ++...+.+|.++++|+ .+++.+ 
T Consensus       253 -----------------------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-  283 (329)
T 3sb4_A          253 -----------------------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-  283 (329)
T ss_dssp             -----------------------------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred             -----------------------------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence                                                           77888887 7666667788888888 888888 


Q ss_pred             cccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEEC
Q 046848          790 TLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDL  834 (956)
Q Consensus       790 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~l  834 (956)
                      .++...+..|.++++|+.+++++|+++...+.+|.++++|+.++.
T Consensus       284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            777666788888888888888888888777778888888888753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=1.4e-15  Score=145.03  Aligned_cols=129  Identities=20%  Similarity=0.245  Sum_probs=100.4

Q ss_pred             CccCcEEEccCCccc-ccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccccccccccccc
Q 046848          655 LVNLVVLSLKSNKFN-GSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTK  733 (956)
Q Consensus       655 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  733 (956)
                      .++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..++.++.|                           
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L---------------------------   66 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL---------------------------   66 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTC---------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCC---------------------------
Confidence            456778888888877 67777777888888888888888765  444444443                           


Q ss_pred             ccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccccc-CCccccCCCCCCEEECCC
Q 046848          734 SYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQ-ITPKIGQLKSLDFLDLSR  812 (956)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~  812 (956)
                                              ++|+|++|++++.+|..+..+++|++|++++|++++. .+..++.+++|++|++++
T Consensus        67 ------------------------~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~  122 (149)
T 2je0_A           67 ------------------------KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN  122 (149)
T ss_dssp             ------------------------CEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred             ------------------------CEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence                                    7888888888877888888888888888888888863 347788888889999998


Q ss_pred             CccCcCCc---ccccCCCCCCeEECcC
Q 046848          813 NQFFGSIP---SSLSQLSRLSVMDLSY  836 (956)
Q Consensus       813 N~l~~~ip---~~l~~l~~L~~L~ls~  836 (956)
                      |++++..+   ..+..+++|++||+++
T Consensus       123 N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          123 CEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CcccchHHHHHHHHHHCCCcccccCCC
Confidence            88887766   5788888888888764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=1.7e-15  Score=147.78  Aligned_cols=83  Identities=28%  Similarity=0.247  Sum_probs=53.9

Q ss_pred             eEEEcCCCCCCCCCchhhhccccCCEEEcccccccccC-CccccCCCCCCEEECCCCccCcCCc---ccccCCCCCCeEE
Q 046848          758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQI-TPKIGQLKSLDFLDLSRNQFFGSIP---SSLSQLSRLSVMD  833 (956)
Q Consensus       758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~ip---~~l~~l~~L~~L~  833 (956)
                      ++|+|++|++++.+|..+..+++|+.|+|++|++++.. +..++.+++|+.|++++|++++..+   ..+..+++|++||
T Consensus        74 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~  153 (168)
T 2ell_A           74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD  153 (168)
T ss_dssp             CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred             CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence            56666666666556666666667777777777766421 2566667777777777777765544   4666677777777


Q ss_pred             CcCCcce
Q 046848          834 LSYNNLS  840 (956)
Q Consensus       834 ls~N~l~  840 (956)
                      +++|.+.
T Consensus       154 l~~n~~~  160 (168)
T 2ell_A          154 GYDREDQ  160 (168)
T ss_dssp             TEETTSC
T ss_pred             CCCCChh
Confidence            7777664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=2.5e-15  Score=146.62  Aligned_cols=136  Identities=25%  Similarity=0.246  Sum_probs=97.9

Q ss_pred             CCCcEEecCCcccc-ccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCccc
Q 046848          631 SQLTLMDLGKNGLS-GEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHE  709 (956)
Q Consensus       631 ~~L~~L~Ls~N~l~-~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~  709 (956)
                      ++|+.|++++|+++ +.+|..+. .+++|++|++++|.+++.  ..+..+++|+.|++++|++++.+|..+..+++|   
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---   97 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL---   97 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC---
T ss_pred             ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC---
Confidence            55666666666665 56666544 577777777777777654  567777888888888888877666666555555   


Q ss_pred             ccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCC-chhhhccccCCEEEccc
Q 046848          710 KGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEV-PEEIMDLAGLIALNLSR  788 (956)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~  788 (956)
                                                                      ++|+|++|++++.. +..+..+++|+.|++++
T Consensus        98 ------------------------------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~  129 (168)
T 2ell_A           98 ------------------------------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFN  129 (168)
T ss_dssp             ------------------------------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCS
T ss_pred             ------------------------------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeC
Confidence                                                            77888888887542 26778888888888888


Q ss_pred             ccccccCC---ccccCCCCCCEEECCCCccCcCCcc
Q 046848          789 NTLTGQIT---PKIGQLKSLDFLDLSRNQFFGSIPS  821 (956)
Q Consensus       789 N~l~~~ip---~~l~~l~~L~~L~Ls~N~l~~~ip~  821 (956)
                      |.+++..+   ..+..+++|++|++++|.+. .+|+
T Consensus       130 N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          130 CEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             SGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             CcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            88885544   47888888888888888887 3443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=2.9e-15  Score=163.53  Aligned_cols=102  Identities=16%  Similarity=0.078  Sum_probs=53.8

Q ss_pred             CCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCc-EEecCCccccccCChhHhhcCccCcE
Q 046848          582 FDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLT-LMDLGKNGLSGEIPTWIGEGLVNLVV  660 (956)
Q Consensus       582 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~ip~~~~~~l~~L~~  660 (956)
                      +++|+.+++++|+++...+.+|.++++|+.+++.+| ++.+.+.+|.+|++|+ .+++.+ +++ .|+...|.++++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCE
Confidence            445555555555555444445555555555555555 4444445555555555 555555 444 455444445555555


Q ss_pred             EEccCCcccccCCccccCCCCcCEEe
Q 046848          661 LSLKSNKFNGSIPLQLCHLANVQILD  686 (956)
Q Consensus       661 L~L~~N~l~~~~p~~l~~l~~L~~L~  686 (956)
                      +++++|+++...+.+|.++++|+.++
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEeCCCccCccchhhhcCCcchhhhc
Confidence            55555555544444555555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=9e-15  Score=145.74  Aligned_cols=129  Identities=27%  Similarity=0.403  Sum_probs=103.4

Q ss_pred             cEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCc
Q 046848          634 TLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSN  713 (956)
Q Consensus       634 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  713 (956)
                      +.+++++|.++ .+|..+.   ++|++|++++|+++ .+|..+.++++|+.|+|++|+|++..+..|.+++.|       
T Consensus        13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L-------   80 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL-------   80 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence            46777777776 6776543   47788888888877 566778888888888888888887777777766665       


Q ss_pred             ccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccc
Q 046848          714 LTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTG  793 (956)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  793 (956)
                                                                  ++|+|++|+|++..|..|..+++|+.|+|++|+|++
T Consensus        81 --------------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~  116 (193)
T 2wfh_A           81 --------------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV  116 (193)
T ss_dssp             --------------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             --------------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence                                                        788888888888888888899999999999999997


Q ss_pred             cCCccccCCCCCCEEECCCCccCcC
Q 046848          794 QITPKIGQLKSLDFLDLSRNQFFGS  818 (956)
Q Consensus       794 ~ip~~l~~l~~L~~L~Ls~N~l~~~  818 (956)
                      ..+..|..+++|+.|+|++|++...
T Consensus       117 ~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          117 VPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             eChhhhhcCccccEEEeCCCCeecC
Confidence            6666788999999999999998753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=5.9e-15  Score=140.70  Aligned_cols=128  Identities=22%  Similarity=0.234  Sum_probs=102.6

Q ss_pred             CceeEEECCCCCCC-CCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEe
Q 046848          559 HKLDYIDLSNNLLS-GRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMD  637 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  637 (956)
                      ++++.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..++.+++|++|++++|++++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            57888888888888 67888888888899999999888865  6788888888888888888877888888888888888


Q ss_pred             cCCcccccc-CChhHhhcCccCcEEEccCCcccccCC---ccccCCCCcCEEeccC
Q 046848          638 LGKNGLSGE-IPTWIGEGLVNLVVLSLKSNKFNGSIP---LQLCHLANVQILDLSS  689 (956)
Q Consensus       638 Ls~N~l~~~-ip~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~  689 (956)
                      +++|++++. .|..+. .+++|++|++++|++++..+   ..+..+++|+.||+++
T Consensus        95 ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            888888742 225554 68888888888888886555   4677888888888764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=1.7e-14  Score=142.00  Aligned_cols=133  Identities=29%  Similarity=0.282  Sum_probs=108.8

Q ss_pred             CcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccC
Q 046848          633 LTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGS  712 (956)
Q Consensus       633 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  712 (956)
                      .+.+++++|+++ .+|..+   .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..++.|      
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------   78 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------   78 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence            467777777777 677544   3578888888888887666677888999999999999987766666666555      


Q ss_pred             cccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccc
Q 046848          713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLT  792 (956)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  792 (956)
                                                                   ++|+|++|++++..+..+..+++|+.|+|++|+++
T Consensus        79 ---------------------------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  113 (177)
T 2o6r_A           79 ---------------------------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK  113 (177)
T ss_dssp             ---------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ---------------------------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence                                                         88999999999877777889999999999999999


Q ss_pred             ccCCccccCCCCCCEEECCCCccCcCCc
Q 046848          793 GQITPKIGQLKSLDFLDLSRNQFFGSIP  820 (956)
Q Consensus       793 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  820 (956)
                      +..+..+..+++|+.|++++|++++..|
T Consensus       114 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          114 SVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            7666667889999999999999998765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=4.4e-16  Score=156.43  Aligned_cols=150  Identities=25%  Similarity=0.297  Sum_probs=90.3

Q ss_pred             CCcEEecCCccccccCCh------hHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhcccccc
Q 046848          632 QLTLMDLGKNGLSGEIPT------WIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTA  705 (956)
Q Consensus       632 ~L~~L~Ls~N~l~~~ip~------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  705 (956)
                      .++.++++.+.+.|.+|.      .+. .+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+..++.
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            344444444444444333      444 46666666666666654 44 5666666666666666665 34444433333


Q ss_pred             CcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEE
Q 046848          706 MTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALN  785 (956)
Q Consensus       706 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  785 (956)
                      |                                                   +.|+|++|++++ +| .+..+++|+.|+
T Consensus        95 L---------------------------------------------------~~L~L~~N~l~~-l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           95 L---------------------------------------------------EELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             C---------------------------------------------------SEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred             C---------------------------------------------------CEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence            3                                                   667777777764 34 567777777777


Q ss_pred             cccccccccCC-ccccCCCCCCEEECCCCccCcCCccc----------ccCCCCCCeEECcCCcce
Q 046848          786 LSRNTLTGQIT-PKIGQLKSLDFLDLSRNQFFGSIPSS----------LSQLSRLSVMDLSYNNLS  840 (956)
Q Consensus       786 Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~----------l~~l~~L~~L~ls~N~l~  840 (956)
                      |++|++++..+ ..+..+++|++|++++|++++.+|..          +..+++|+.||  +|+++
T Consensus       122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            77777764222 35677777777777777777665543          66777777776  55544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=6.5e-14  Score=137.52  Aligned_cols=81  Identities=23%  Similarity=0.294  Sum_probs=40.2

Q ss_pred             eEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc--cccCCCCCCEEECCCCccCcCCcc----cccCCCCCCe
Q 046848          758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP--KIGQLKSLDFLDLSRNQFFGSIPS----SLSQLSRLSV  831 (956)
Q Consensus       758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~--~l~~l~~L~~L~Ls~N~l~~~ip~----~l~~l~~L~~  831 (956)
                      ++|+|++|++++..+..+..+++|+.|+|++|+++ .+|.  .++.+++|+.|++++|+++. +|.    .+..+++|++
T Consensus        67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSE
T ss_pred             CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccce
Confidence            34444444444332233344555555555555553 3333  45555555555555555552 333    2555566666


Q ss_pred             EECcCCcce
Q 046848          832 MDLSYNNLS  840 (956)
Q Consensus       832 L~ls~N~l~  840 (956)
                      ||+++|...
T Consensus       145 Ld~~~n~~~  153 (176)
T 1a9n_A          145 LDFQKVKLK  153 (176)
T ss_dssp             ETTEECCHH
T ss_pred             eCCCcCCHH
Confidence            666665543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=7.7e-16  Score=154.64  Aligned_cols=58  Identities=24%  Similarity=0.243  Sum_probs=37.6

Q ss_pred             eEEEcCCCCCCCCCc-hhhhccccCCEEEcccccccccCCcc----------ccCCCCCCEEECCCCccCc
Q 046848          758 KILDLSSNKLGGEVP-EEIMDLAGLIALNLSRNTLTGQITPK----------IGQLKSLDFLDLSRNQFFG  817 (956)
Q Consensus       758 ~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~----------l~~l~~L~~L~Ls~N~l~~  817 (956)
                      +.|++++|++++..+ ..+..+++|+.|++++|.+++.+|..          +..+++|+.||  +|.++.
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            566666666664322 35667777777777777777665543          67777777776  666653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.46  E-value=1e-12  Score=146.38  Aligned_cols=219  Identities=11%  Similarity=0.084  Sum_probs=159.6

Q ss_pred             ceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecC
Q 046848          560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG  639 (956)
Q Consensus       560 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  639 (956)
                      +|+.+.+.. .++...+.+|.+|++|+.+++++|+++.....+|. +.+|+.+.+..+ ++.+-..+|.+|++|+.+++.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            456666654 45545566788888888888888888866666666 578888888754 776777788888888888888


Q ss_pred             CccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCC-----CCcChhccccccCcccccCcc
Q 046848          640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS-----GIIPKCFNNFTAMTHEKGSNL  714 (956)
Q Consensus       640 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~~~~~~~  714 (956)
                      .| ++ .|+...|.+ .+|+.+.+ .+.++..-+.+|.++++|+.+++.+|.+.     ...+.+|.++++|        
T Consensus       235 ~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L--------  302 (401)
T 4fdw_A          235 EN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL--------  302 (401)
T ss_dssp             TT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC--------
T ss_pred             CC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC--------
Confidence            75 55 777777754 78888888 45566555677888888888888887765     2334455555554        


Q ss_pred             cccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccccc
Q 046848          715 TLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQ  794 (956)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  794 (956)
                                                                 +.++|. +.++..-...|.++++|+.++|..| ++..
T Consensus       303 -------------------------------------------~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I  337 (401)
T 4fdw_A          303 -------------------------------------------ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQI  337 (401)
T ss_dssp             -------------------------------------------CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred             -------------------------------------------CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence                                                       677777 4466556677888888888888655 6656


Q ss_pred             CCccccCCCCCCEEECCCCccCcCCcccccCCC-CCCeEECcCCcc
Q 046848          795 ITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLS-RLSVMDLSYNNL  839 (956)
Q Consensus       795 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~N~l  839 (956)
                      -+.+|.++ +|+.+++++|.+....+..|..++ .++.+.+..+.+
T Consensus       338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            67788888 899999998888877777777774 677787776654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=1.8e-13  Score=133.26  Aligned_cols=88  Identities=24%  Similarity=0.219  Sum_probs=80.4

Q ss_pred             eEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCC
Q 046848          758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYN  837 (956)
Q Consensus       758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  837 (956)
                      ++|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|
T Consensus        33 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence            78999999999888889999999999999999999777777899999999999999999888888999999999999999


Q ss_pred             cceecCCC
Q 046848          838 NLSGKIPS  845 (956)
Q Consensus       838 ~l~g~ip~  845 (956)
                      +++|.++.
T Consensus       113 ~~~c~c~~  120 (170)
T 3g39_A          113 PWDCACSD  120 (170)
T ss_dssp             CBCTTBGG
T ss_pred             CCCCCchh
Confidence            99998763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=2e-13  Score=134.01  Aligned_cols=130  Identities=18%  Similarity=0.241  Sum_probs=108.9

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      .+|+.|++++|+++. +|......++|+.|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus        19 ~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           19 VRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             TSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            689999999999984 455333344999999999999875  57889999999999999999776666799999999999


Q ss_pred             CCccccccCCh--hHhhcCccCcEEEccCCcccccCCcc----ccCCCCcCEEeccCCcCCC
Q 046848          639 GKNGLSGEIPT--WIGEGLVNLVVLSLKSNKFNGSIPLQ----LCHLANVQILDLSSNNISG  694 (956)
Q Consensus       639 s~N~l~~~ip~--~~~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~  694 (956)
                      ++|++. .+|.  .+. .+++|++|++++|++. .+|..    +..+++|+.||+++|.+..
T Consensus        96 ~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           96 TNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999996 7776  555 7999999999999998 45654    8889999999999998763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.42  E-value=4.6e-12  Score=141.04  Aligned_cols=126  Identities=8%  Similarity=0.078  Sum_probs=69.3

Q ss_pred             eeEEECCCCCCCCCCCccccCCCCCCEEEcCCCccc-----ccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcE
Q 046848          561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFF-----GKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTL  635 (956)
Q Consensus       561 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  635 (956)
                      |+.+.+ .+.++.....+|.++++|+.+++.+|.+.     ...+.+|.++++|+.+++.+ .++.+-..+|.+|++|+.
T Consensus       250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~  327 (401)
T 4fdw_A          250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQ  327 (401)
T ss_dssp             CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCE
T ss_pred             ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccE
Confidence            444444 22333334455666666666666665543     34445566666666666663 355555556666666666


Q ss_pred             EecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCC-CcCEEeccCCc
Q 046848          636 MDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLA-NVQILDLSSNN  691 (956)
Q Consensus       636 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~  691 (956)
                      ++|..| ++ .|+...|.++ +|+.+++.+|.+....+..|.+++ +++.|.+..+.
T Consensus       328 l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          328 LTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             EEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             EEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            666443 44 5555555555 666666666665544444455553 45555555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=5.4e-13  Score=130.30  Aligned_cols=87  Identities=24%  Similarity=0.225  Sum_probs=77.3

Q ss_pred             eEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCC
Q 046848          758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYN  837 (956)
Q Consensus       758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  837 (956)
                      +.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|+.+++|++|+|++|+|++..+..|..+++|++|++++|
T Consensus        36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence            78899999998888888999999999999999999766666789999999999999999777777999999999999999


Q ss_pred             cceecCC
Q 046848          838 NLSGKIP  844 (956)
Q Consensus       838 ~l~g~ip  844 (956)
                      ++.|.++
T Consensus       116 ~~~c~~~  122 (174)
T 2r9u_A          116 PWDCECR  122 (174)
T ss_dssp             CBCTTBG
T ss_pred             Ccccccc
Confidence            9998765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.37  E-value=1.6e-12  Score=126.41  Aligned_cols=109  Identities=25%  Similarity=0.291  Sum_probs=81.7

Q ss_pred             CcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccccccccccccccccc
Q 046848          658 LVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFD  737 (956)
Q Consensus       658 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  737 (956)
                      .+++++++|.++ .+|..+.  ++|+.|+|++|+|++..|..|..++.|                               
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L-------------------------------   56 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQL-------------------------------   56 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccC-------------------------------
Confidence            455666666665 3554442  677777777777777777767666555                               


Q ss_pred             ceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCc
Q 046848          738 KAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG  817 (956)
Q Consensus       738 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  817 (956)
                                          ++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|+.+++|+.|+|++|+++.
T Consensus        57 --------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           57 --------------------TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             --------------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             --------------------CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence                                778888888887666677888889999999999987666678899999999999999886


Q ss_pred             CCc
Q 046848          818 SIP  820 (956)
Q Consensus       818 ~ip  820 (956)
                      ..+
T Consensus       117 ~c~  119 (170)
T 3g39_A          117 ACS  119 (170)
T ss_dssp             TBG
T ss_pred             Cch
Confidence            543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.34  E-value=2.5e-11  Score=135.92  Aligned_cols=155  Identities=14%  Similarity=0.091  Sum_probs=78.1

Q ss_pred             CCCcccCCCCCCcEEECCCCcCcccc-ccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccC
Q 046848          281 SIPEAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSL  359 (956)
Q Consensus       281 ~~p~~l~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~  359 (956)
                      ....+|.++.+|+.+.+.. .++.|+ .+|.++++|+.+++..+ ++......|..+.      +|+.+.+..+-..-..
T Consensus        62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~------~L~~i~~p~~l~~i~~  133 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCY------ALKSILLPLMLKSIGV  133 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT------TCCCCCCCTTCCEECT
T ss_pred             hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccc------cchhhcccCceeeecc
Confidence            3445677777788887764 366654 46777778887777654 3323333444444      5555555433221111


Q ss_pred             CCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCC
Q 046848          360 PNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPF  439 (956)
Q Consensus       360 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  439 (956)
                      ..|.++..++......  .......+|..+++|+.+.+.++. . .++...|.++++|+.+.+..+ ++......|....
T Consensus       134 ~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~  208 (394)
T 4fs7_A          134 EAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECI  208 (394)
T ss_dssp             TTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCT
T ss_pred             eeeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhcccc
Confidence            2244443322222211  112223456666667766665442 2 123334566666666666554 3333444444444


Q ss_pred             CcceEEcCC
Q 046848          440 QLSQVNLGS  448 (956)
Q Consensus       440 ~L~~L~L~~  448 (956)
                      .|+.+.+..
T Consensus       209 ~L~~i~~~~  217 (394)
T 4fs7_A          209 LLENMEFPN  217 (394)
T ss_dssp             TCCBCCCCT
T ss_pred             ccceeecCC
Confidence            555444433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=4.1e-12  Score=123.96  Aligned_cols=106  Identities=25%  Similarity=0.312  Sum_probs=78.0

Q ss_pred             cEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccc
Q 046848          659 VVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDK  738 (956)
Q Consensus       659 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  738 (956)
                      +.+++++|++. .+|..+.  ++|+.|+|++|+|++..|..|.+++.|                                
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L--------------------------------   59 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNL--------------------------------   59 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC--------------------------------
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCC--------------------------------
Confidence            45666666664 4555443  677777777777777767666666555                                


Q ss_pred             eeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcC
Q 046848          739 AVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGS  818 (956)
Q Consensus       739 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  818 (956)
                                         ++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|+.+++|+.|+|++|++...
T Consensus        60 -------------------~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           60 -------------------QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             -------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             -------------------CEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence                               6778888888766666677888888999999998866556688899999999999998854

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=6.3e-14  Score=154.58  Aligned_cols=66  Identities=23%  Similarity=0.228  Sum_probs=34.5

Q ss_pred             eEEEcCCCCCCCC----CchhhhccccCCEEEccccccccc----CCccccCCCCCCEEECCCCccCcCCcccc
Q 046848          758 KILDLSSNKLGGE----VPEEIMDLAGLIALNLSRNTLTGQ----ITPKIGQLKSLDFLDLSRNQFFGSIPSSL  823 (956)
Q Consensus       758 ~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l  823 (956)
                      ++|||++|.|++.    ++..+...++|+.|+|++|.|++.    ++..+...++|++|||++|.|+..-...+
T Consensus       186 ~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             CEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             CEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            5555665555532    234445555666666666666542    22333445566666666666654433333

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.25  E-value=1.5e-10  Score=129.43  Aligned_cols=38  Identities=13%  Similarity=0.110  Sum_probs=17.2

Q ss_pred             hhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecc
Q 046848          457 KWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLS  496 (956)
Q Consensus       457 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls  496 (956)
                      ..|.++++|+.+.+.++..  .++...+..+.+|+.+++.
T Consensus       156 ~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~  193 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLP  193 (394)
T ss_dssp             TTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCC
T ss_pred             hhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcC
Confidence            3455556666666554321  2333333334444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=3.1e-13  Score=149.05  Aligned_cols=159  Identities=14%  Similarity=0.090  Sum_probs=83.3

Q ss_pred             CCcCEEEccCceeeeeCCccc-cCCCCCcEEecCCccccccCChhHhh----cCccCcEEEccCCcccc----cCCcccc
Q 046848          607 KNLQSLSLYNNRLTGELPSFF-TNGSQLTLMDLGKNGLSGEIPTWIGE----GLVNLVVLSLKSNKFNG----SIPLQLC  677 (956)
Q Consensus       607 ~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~ip~~~~~----~l~~L~~L~L~~N~l~~----~~p~~l~  677 (956)
                      ++|++|+|++|.++......+ ..+++|+.|+|++|.+++.-...+.+    ..++|++|+|++|.++.    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            344455555554432211111 12335566666666655332222221    23556666666666653    2333445


Q ss_pred             CCCCcCEEeccCCcCCCCcC----hhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceeccc
Q 046848          678 HLANVQILDLSSNNISGIIP----KCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQST  753 (956)
Q Consensus       678 ~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  753 (956)
                      ..++|++|+|++|.++....    ..+...                                                  
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~--------------------------------------------------  210 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRN--------------------------------------------------  210 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGC--------------------------------------------------
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcC--------------------------------------------------
Confidence            66777777777777764321    122221                                                  


Q ss_pred             ccceeEEEcCCCCCCCC----CchhhhccccCCEEEcccccccccCCccccCCC-----CCCEEE--CCCCccC
Q 046848          754 LGLVKILDLSSNKLGGE----VPEEIMDLAGLIALNLSRNTLTGQITPKIGQLK-----SLDFLD--LSRNQFF  816 (956)
Q Consensus       754 l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-----~L~~L~--Ls~N~l~  816 (956)
                       +.|+.|||++|.|++.    ++..+...+.|++|||++|.|++.....+..+.     .|+.+.  +..|.++
T Consensus       211 -~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          211 -RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             -SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             -CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence             2347788888887753    344555678888999999988765544444332     155555  5555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=2.3e-11  Score=133.80  Aligned_cols=85  Identities=21%  Similarity=0.109  Sum_probs=46.1

Q ss_pred             eEEEcCC-CCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcC
Q 046848          758 KILDLSS-NKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSY  836 (956)
Q Consensus       758 ~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  836 (956)
                      +.|+|++ |+|++..|..|.++++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..+..++ |+.|++++
T Consensus        34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~  112 (347)
T 2ifg_A           34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG  112 (347)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred             eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence            4555553 555544445555555555555555555555555555555555555555555544444444443 55555555


Q ss_pred             CcceecC
Q 046848          837 NNLSGKI  843 (956)
Q Consensus       837 N~l~g~i  843 (956)
                      |+|.|.+
T Consensus       113 N~~~c~c  119 (347)
T 2ifg_A          113 NPLHCSC  119 (347)
T ss_dssp             SCCCCCG
T ss_pred             CCccCCC
Confidence            5555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=5e-11  Score=131.05  Aligned_cols=104  Identities=21%  Similarity=0.240  Sum_probs=68.8

Q ss_pred             EEecCCc-cccccCChhHhhcCccCcEEEccC-CcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccC
Q 046848          635 LMDLGKN-GLSGEIPTWIGEGLVNLVVLSLKS-NKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGS  712 (956)
Q Consensus       635 ~L~Ls~N-~l~~~ip~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  712 (956)
                      .++++++ +++ .+|. +. .+++|++|+|++ |++.+..+..|.++++|+.|+|++|+|++..|..|.++++|      
T Consensus        12 ~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L------   82 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL------   82 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC------
T ss_pred             EEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCC------
Confidence            4577776 676 5776 54 567777777775 77776666667777777777777777776666666665555      


Q ss_pred             cccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccc
Q 046848          713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLT  792 (956)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  792 (956)
                                                                   +.|||++|+|++..+..+..++ |+.|+|++|.+.
T Consensus        83 ---------------------------------------------~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           83 ---------------------------------------------SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             ---------------------------------------------CEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ---------------------------------------------CEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence                                                         6677777777655554554444 677777777665


Q ss_pred             c
Q 046848          793 G  793 (956)
Q Consensus       793 ~  793 (956)
                      .
T Consensus       117 c  117 (347)
T 2ifg_A          117 C  117 (347)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.05  E-value=2.2e-08  Score=111.78  Aligned_cols=126  Identities=13%  Similarity=0.137  Sum_probs=73.9

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ..|+.+.+.++..+ ....+|.++++|+.+.+. +.++.....+|.++.+|+.+++..+ ++.+-..+|.+|.+|+.+.|
T Consensus       265 ~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          265 AYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             SSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             ccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence            45666666544332 444566777777777775 3444455566777777777777654 55555667777777777777


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcC
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNI  692 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  692 (956)
                      ..+ ++ .|....|.++++|+.+++.++....   ..+....+|+.+.+..|.+
T Consensus       342 p~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          342 PSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             Ccc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            544 55 6777667677777777777765432   3455666777776665544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.02  E-value=1.6e-08  Score=113.00  Aligned_cols=65  Identities=9%  Similarity=0.030  Sum_probs=32.1

Q ss_pred             eCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccC
Q 046848          622 ELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSS  689 (956)
Q Consensus       622 ~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  689 (956)
                      .-..+|.++..|+.+.+.++..  .+....+.++++|+.+.+. +.++..-..+|.++.+|+.+++..
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~  320 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE  320 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred             cccceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC
Confidence            3444555666666665554432  3444444455555555553 223323334455555555555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.81  E-value=1.3e-09  Score=118.96  Aligned_cols=82  Identities=21%  Similarity=0.305  Sum_probs=45.1

Q ss_pred             cceeEEEcCCCCCCCCCchhhh---ccccCCEEEccccccccc----CCccccCCCCCCEEECCCCccCcCCcccccC-C
Q 046848          755 GLVKILDLSSNKLGGEVPEEIM---DLAGLIALNLSRNTLTGQ----ITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQ-L  826 (956)
Q Consensus       755 ~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-l  826 (956)
                      +.|+.|+|++|.+.+..+..+.   .+++|+.|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-..+.. +
T Consensus       252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al  331 (362)
T 2ra8_A          252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL  331 (362)
T ss_dssp             TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred             CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence            3446666666666543333333   356677777777776653    3333445667777777777665433333332 2


Q ss_pred             CCCCeEECcCCc
Q 046848          827 SRLSVMDLSYNN  838 (956)
Q Consensus       827 ~~L~~L~ls~N~  838 (956)
                        ...+++++|+
T Consensus       332 --g~~~~~~~~~  341 (362)
T 2ra8_A          332 --PMKIDVSDSQ  341 (362)
T ss_dssp             --CSEEECCSBC
T ss_pred             --CCEEEecCCc
Confidence              2456666655

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.74  E-value=1.1e-06  Score=97.33  Aligned_cols=141  Identities=11%  Similarity=0.128  Sum_probs=98.3

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ..++.+.+..+ ++.....+|.++..|+.+.+..+ ++..-..+|.++.+|+.+.+..+ ++.....+|.+|++|+.+++
T Consensus       217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l  293 (379)
T 4h09_A          217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM  293 (379)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred             cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence            56666666544 33344566777888888888765 55455667788888888888654 55556667888888888888


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhcccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTA  705 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  705 (956)
                      .++.++ .|+...|.++.+|+.+.+..+ ++..-..+|.++++|+.+.+..+ ++.+-..+|.++..
T Consensus       294 ~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          294 DNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             CCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             cccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            888777 777777777888888888654 55444567888888888888654 55455566766543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.59  E-value=2.4e-06  Score=94.65  Aligned_cols=49  Identities=8%  Similarity=0.062  Sum_probs=25.6

Q ss_pred             hcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCC
Q 046848          386 VGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIP  437 (956)
Q Consensus       386 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  437 (956)
                      +....+|+.+.+... ++.+... .|.++.+|+.+.+..+ ++.....+|..
T Consensus        42 ~~~~~~i~~v~ip~~-vt~Ig~~-aF~~C~~L~~I~lp~~-v~~Ig~~aF~~   90 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-ITSIGEA-NFNSCYNMTKVTVAST-VTSIGDGAFAD   90 (379)
T ss_dssp             GGGGGGCSEEEECTT-EEEECTT-TTTTCTTCCEEEECTT-CCEECTTTTTT
T ss_pred             cccccCCEEEEeCCC-ccChHHH-HhhCCCCCCEEEeCCc-ceEechhhhcC
Confidence            444556777666542 3333333 3666777777766543 44444444433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.57  E-value=1.8e-07  Score=101.84  Aligned_cols=139  Identities=24%  Similarity=0.270  Sum_probs=83.8

Q ss_pred             CCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHh--hcCCCCccCCCCEEEccC--CcCcc
Q 046848          282 IPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQ--NLSDGCTKTSLAWLFLDS--NEITG  357 (956)
Q Consensus       282 ~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~~~~~~~L~~L~Ls~--n~l~~  357 (956)
                      +...+..+|+|+.|++++|.-..++. +. +++|++|++..|.++......+.  .++      +|+.|+|+.  |...+
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp------~L~~L~L~~~~~~~~~  235 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLP------NLEKLVLYVGVEDYGF  235 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCT------TCCEEEEECBCGGGTC
T ss_pred             HHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCC------CCcEEEEecccccccc
Confidence            33455677888999888874223444 33 78899999988887755545554  455      888888753  22111


Q ss_pred             c------CCCC--CCCCCCCEEEeeccccccccchhhc---CCCCCCEEECcCccCccccCHHhh---hCCCCCCEEEcC
Q 046848          358 S------LPNF--GGFSSLKRLSIANNRLNGTINKSVG---QLVKLESLFLHNNSLRGVISEAFL---SNLSNLTILYLA  423 (956)
Q Consensus       358 ~------~~~~--~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~Ls  423 (956)
                      .      .+.+  ..+++|++|++.+|.+.+..+..+.   .+++|++|+|+.|.+.+.....+.   ..+++|+.|+++
T Consensus       236 ~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~  315 (362)
T 2ra8_A          236 DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK  315 (362)
T ss_dssp             CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred             chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence            1      0112  3467788888877777654433332   466777777777777654322221   335666666666


Q ss_pred             CCccc
Q 046848          424 DNSLT  428 (956)
Q Consensus       424 ~n~l~  428 (956)
                      +|.++
T Consensus       316 ~n~i~  320 (362)
T 2ra8_A          316 YNYLS  320 (362)
T ss_dssp             SBBCC
T ss_pred             CCcCC
Confidence            66554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.34  E-value=1.3e-07  Score=92.79  Aligned_cols=65  Identities=17%  Similarity=0.185  Sum_probs=33.1

Q ss_pred             hccccCCEEEccccccccc----CCccccCCCCCCEEEC--CCCccCcC----CcccccCCCCCCeEECcCCcce
Q 046848          776 MDLAGLIALNLSRNTLTGQ----ITPKIGQLKSLDFLDL--SRNQFFGS----IPSSLSQLSRLSVMDLSYNNLS  840 (956)
Q Consensus       776 ~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~L--s~N~l~~~----ip~~l~~l~~L~~L~ls~N~l~  840 (956)
                      ...+.|++|+|++|.|++.    +...+...++|++|+|  ++|.+...    +.+.+...+.|++|++++|.+.
T Consensus        90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3344555555555555432    2334444555666666  55555432    2233344455666666666553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.27  E-value=5.5e-07  Score=92.74  Aligned_cols=65  Identities=26%  Similarity=0.341  Sum_probs=31.9

Q ss_pred             ccceeEEEcCCCCCCC--CCchhhhccccCCEEEcccccccccCCccccCCC--CCCEEECCCCccCcCCc
Q 046848          754 LGLVKILDLSSNKLGG--EVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLK--SLDFLDLSRNQFFGSIP  820 (956)
Q Consensus       754 l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~L~Ls~N~l~~~ip  820 (956)
                      ++.|+.|+||+|+|++  .+|..+..+++|+.|+|++|+|++.  +.+..+.  +|++|+|++|.+++.+|
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            3444555555555554  2334445555555555555555542  2233333  55555555555554443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.25  E-value=1.8e-07  Score=96.34  Aligned_cols=40  Identities=25%  Similarity=0.444  Sum_probs=20.2

Q ss_pred             cCccCcEEEccCCcccc--cCCccccCCCCcCEEeccCCcCC
Q 046848          654 GLVNLVVLSLKSNKFNG--SIPLQLCHLANVQILDLSSNNIS  693 (956)
Q Consensus       654 ~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~  693 (956)
                      ++++|+.|+|++|++++  .+|..+..+++|+.|+|++|+|+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~  209 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  209 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence            35555555555555554  23334444555555555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.18  E-value=7.9e-07  Score=87.20  Aligned_cols=67  Identities=15%  Similarity=0.131  Sum_probs=41.7

Q ss_pred             cccCCCCCCcEEECCCC-cCcc-----ccccccCCCCCCEEEccCCCCCCcchHH----HhhcCCCCccCCCCEEEccCC
Q 046848          284 EAFGHMPSLNTLFLASN-QFRE-----IPKSLGNMCNLKSLTLSYNTLRGDLSEI----IQNLSDGCTKTSLAWLFLDSN  353 (956)
Q Consensus       284 ~~l~~l~~L~~L~Ls~n-~l~~-----ip~~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~~~~~~~L~~L~Ls~n  353 (956)
                      ..+...+.|++|+|++| .+..     +...+...++|++|+|++|.+.......    +...+      +|++|+|++|
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~------~L~~L~L~~N  103 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN------TLKSLNVESN  103 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS------SCCEEECCSS
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC------CcCEEECcCC
Confidence            34556677888888887 7764     3455666778888888888876543322    22223      5555555555


Q ss_pred             cCc
Q 046848          354 EIT  356 (956)
Q Consensus       354 ~l~  356 (956)
                      .+.
T Consensus       104 ~i~  106 (185)
T 1io0_A          104 FIS  106 (185)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.92  E-value=4e-06  Score=79.78  Aligned_cols=34  Identities=9%  Similarity=0.110  Sum_probs=16.3

Q ss_pred             CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCC
Q 046848          114 HLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNT  148 (956)
Q Consensus       114 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n  148 (956)
                      .|++||++++.++.. --..+..+++|++|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCC
Confidence            455555555555433 1223344555555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.74  E-value=3.4e-06  Score=80.33  Aligned_cols=86  Identities=16%  Similarity=0.175  Sum_probs=67.5

Q ss_pred             CCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCC----CCCcEEeccccc-CCCCchhHHhhcCC
Q 046848          138 SKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHL----SSLIYLDLSFSN-LSKFSNWMQVLSKL  212 (956)
Q Consensus       138 ~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~~~l~~l  212 (956)
                      .+|++||+++|.++..--..+.++++|++|+|++|...+......++.+    ++|++|++++|. +++  .-...++.+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIALHHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHHGGGC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHHHhcC
Confidence            5799999999988765556678899999999999975466666667765    479999999885 655  335667889


Q ss_pred             CCCCEEEecCCCC
Q 046848          213 DSLKALYLISCDL  225 (956)
Q Consensus       213 ~~L~~L~l~~~~~  225 (956)
                      ++|++|++++|.-
T Consensus       139 ~~L~~L~L~~c~~  151 (176)
T 3e4g_A          139 RNLKYLFLSDLPG  151 (176)
T ss_dssp             TTCCEEEEESCTT
T ss_pred             CCCCEEECCCCCC
Confidence            9999999999864

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.13  E-value=0.00061  Score=61.79  Aligned_cols=59  Identities=20%  Similarity=0.186  Sum_probs=46.0

Q ss_pred             EEEccccccc-ccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecC
Q 046848          783 ALNLSRNTLT-GQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKI  843 (956)
Q Consensus       783 ~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  843 (956)
                      .++.+++.++ ..+|..+  -++|+.|+|++|+|+...+..|..+++|+.|+|++|+|.|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC   71 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC   71 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence            6677777775 3455443  246888999999998777778888999999999999998875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.93  E-value=0.00021  Score=69.30  Aligned_cols=89  Identities=12%  Similarity=0.194  Sum_probs=42.2

Q ss_pred             CCCCCcCEEEccCceeeee----CCccccCCCCCcEEecCCccccccCChhHhhcC---ccCcEEEccCC---cccc---
Q 046848          604 GFLKNLQSLSLYNNRLTGE----LPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGL---VNLVVLSLKSN---KFNG---  670 (956)
Q Consensus       604 ~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l---~~L~~L~L~~N---~l~~---  670 (956)
                      ..-+.|+.|+|++|+|...    +...+..-+.|+.|+|++|.|.+.--..+.+.+   +.|++|+|++|   .+..   
T Consensus        67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~  146 (197)
T 1pgv_A           67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE  146 (197)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence            3334455555555544421    222333445555555555555533222222222   34666666543   2221   


Q ss_pred             -cCCccccCCCCcCEEeccCCcC
Q 046848          671 -SIPLQLCHLANVQILDLSSNNI  692 (956)
Q Consensus       671 -~~p~~l~~l~~L~~L~Ls~N~l  692 (956)
                       .+...+..-+.|+.|+++.|.+
T Consensus       147 ~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          147 MDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHhCCCcCeEeccCCCc
Confidence             1233445556777777776654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.69  E-value=0.0013  Score=63.67  Aligned_cols=40  Identities=8%  Similarity=0.172  Sum_probs=22.7

Q ss_pred             CCCCCcEEECCCC-cCcc-----ccccccCCCCCCEEEccCCCCCC
Q 046848          288 HMPSLNTLFLASN-QFRE-----IPKSLGNMCNLKSLTLSYNTLRG  327 (956)
Q Consensus       288 ~l~~L~~L~Ls~n-~l~~-----ip~~l~~l~~L~~L~Ls~n~l~~  327 (956)
                      +-+.|++|+|++| .+..     +-+.+..-+.|+.|+|++|.+..
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd   84 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD   84 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh
Confidence            3455666666654 5543     33445555666666666666653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.20  E-value=0.0058  Score=55.25  Aligned_cols=57  Identities=21%  Similarity=0.251  Sum_probs=47.7

Q ss_pred             eEEEcCCCCCC-CCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccC
Q 046848          758 KILDLSSNKLG-GEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFF  816 (956)
Q Consensus       758 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  816 (956)
                      ..+|-+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            57899999997 45665432  46999999999999777777899999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	956
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.004
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	6e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 87.1 bits (214), Expect = 4e-19
 Identities = 64/281 (22%), Positives = 107/281 (38%), Gaps = 9/281 (3%)

Query: 592 NNSFFGKIPDSIGFLKNLQSLSLYNNRLTG--ELPSFFTNGSQLTLMDLGKNGLSGEIPT 649
           N ++ G + D+      + +L L    L     +PS   N   L  + +G          
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 650 WIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHE 709
                L  L  L +     +G+IP  L  +  +  LD S N +SG +P   ++   +   
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 710 KGSNLTLISNYYT-SLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLG 768
                    N  + ++       +K +    +   + +     +   L       S  + 
Sbjct: 155 T-----FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML 209

Query: 769 GEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSR 828
                 +                      K+G  K+L+ LDL  N+ +G++P  L+QL  
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 829 LSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCGLPLP 868
           L  +++S+NNL G+IP G  LQ F  S YA N  LCG PLP
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 85.2 bits (209), Expect = 2e-18
 Identities = 73/370 (19%), Positives = 117/370 (31%), Gaps = 72/370 (19%)

Query: 36  CIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCG--WRGVNCSNRTGHVYKLDLHIL 93
           C  ++++ALL  K+ L +    LSSW       DCC   W GV C   T           
Sbjct: 3   CNPQDKQALLQIKKDLGN-PTTLSSW---LPTTDCCNRTWLGVLCDTDTQTY-------- 50

Query: 94  QVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGP 153
                                +  LDLSG N                            P
Sbjct: 51  --------------------RVNNLDLSGLNLPKP-----------------------YP 67

Query: 154 IPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLD 213
           IP  L NL  L      F  +    NL      +      L +  ++  +    +   L 
Sbjct: 68  IPSSLANLPYLN-----FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 214 SLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINL 273
            +K L  +         +    ++S  +L  I   GN ++ +I     +  S L   + +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF-SKLFTSMTI 181

Query: 274 GSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEII 333
             N+L G IP  F ++         +    +     G+  N          +    + + 
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN-------TQKIHLAKNSLA 234

Query: 334 QNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKL 392
            +L       +L  L L +N I G+LP        L  L+++ N L G I    G L + 
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRF 293

Query: 393 ESLFLHNNSL 402
           +     NN  
Sbjct: 294 DVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.6 bits (184), Expect = 3e-15
 Identities = 55/264 (20%), Positives = 95/264 (35%), Gaps = 5/264 (1%)

Query: 385 SVGQLVKLESLFLHNNSLRGVIS-EAFLSNLSNLTILYLADN-SLTLEFSHDWIPPFQLS 442
           +  Q  ++ +L L   +L       + L+NL  L  LY+    +L            QL 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 443 QVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKG 502
            + +    +    P +L     +++LD S + +S T+P    +    +       N+I G
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT-FDGNRISG 163

Query: 503 KLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLD 562
            +P+    F      + IS N+  G IP    N +   +  ++              K  
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 563 YIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGE 622
                                +L  L+L NN  +G +P  +  LK L SL++  N L GE
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 623 LPSFFTNGSQLTLMDLGKN-GLSG 645
           +P    N  +  +     N  L G
Sbjct: 284 IPQ-GGNLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.0 bits (180), Expect = 1e-14
 Identities = 60/265 (22%), Positives = 104/265 (39%), Gaps = 9/265 (3%)

Query: 559 HKLDYIDLSNNLLSGR--LPDCWSQFDSLAILNLANN-SFFGKIPDSIGFLKNLQSLSLY 615
           ++++ +DLS   L     +P   +    L  L +    +  G IP +I  L  L  L + 
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 616 NNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQ 675
           +  ++G +P F +    L  +D   N LSG +P  I   L NLV ++   N+ +G+IP  
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDS 168

Query: 676 LCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSY 735
               + +      S N              +     S   L  +       D        
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 736 FDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQI 795
              ++    G     ++       LDL +N++ G +P+ +  L  L +LN+S N L G+I
Sbjct: 229 AKNSLAFDLGKVGLSKNLN----GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 796 TPKIGQLKSLDFLDLSRNQFFGSIP 820
            P+ G L+  D    + N+     P
Sbjct: 285 -PQGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.7 bits (117), Expect = 8e-07
 Identities = 47/242 (19%), Positives = 86/242 (35%), Gaps = 7/242 (2%)

Query: 464 QILSLDISNSGIS--DTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDIS 521
           ++ +LD+S   +     +P+   N  Y L+F  +            +         + I+
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 522 SNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYI--DLSNNLLSGRLPDCW 579
                G IP        L      ++     L        + +      N +SG +PD +
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 580 SQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG 639
             F  L      + +             NL  + L  N L G+    F +      + L 
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKC 699
           KN L+ ++        +N + L   +N+  G++P  L  L  +  L++S NN+ G IP+ 
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLR--NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

Query: 700 FN 701
            N
Sbjct: 288 GN 289

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.0 bits (102), Expect = 6e-05
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 70  CCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSS 129
                  + +   G V            +  + GT+   L  L+ L  L++S NN  G  
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-E 283

Query: 130 IPEFIGSLSKLSYLGLSNTEFAGPIPL 156
           IP+  G+L +      +N +     PL
Sbjct: 284 IPQG-GNLQRFDVSAYANNKCLCGSPL 309

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.9 bits (193), Expect = 5e-16
 Identities = 70/358 (19%), Positives = 127/358 (35%), Gaps = 61/358 (17%)

Query: 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGF 171
           L  +T L          SI + +  L+ L+ +  SN +     P  L NL++L  + +  
Sbjct: 43  LDQVTTLQADRLGIK--SI-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN 97

Query: 172 NSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPS 231
           N +     L  L++L+ L   +   +++    N   +     S   +  IS     T   
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 232 SDLYLNSSTSLEVIVIL------------------------------GNNLTDSIYPWLF 261
              + N  T L+ +  L                               NN    I P   
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI 217

Query: 262 NVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLS 321
             +   ++ ++L  NQL+         + +L  L LA+NQ   +   L  +  L  L L 
Sbjct: 218 LTN---LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLG 271

Query: 322 YNTLRGDLSEI--------------IQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSS 367
            N +                     ++++S      +L +L L  N I+  +      + 
Sbjct: 272 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD-ISPVSSLTK 330

Query: 368 LKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
           L+RL  ANN+++     S+  L  +  L   +N +  +     L+NL+ +T L L D 
Sbjct: 331 LQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.5 bits (179), Expect = 3e-14
 Identities = 66/392 (16%), Positives = 124/392 (31%), Gaps = 49/392 (12%)

Query: 464 QILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-----GKLPNLSSRFHPYRPGI 518
           + +   +  + ++DTV          ++        IK       L NL+         I
Sbjct: 23  EKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSIDGVEYLNNLTQ--------I 71

Query: 519 DISSNQFEGPIPQLPL-NASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPD 577
           + S+NQ     P   L     + ++ N+ +             L   +     +      
Sbjct: 72  NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 578 CWSQFDSLAILNLAN------------NSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPS 625
                  L+   +++             SF  ++ D            L  +       S
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 626 FFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQIL 685
                + L  +    N +S   P  I     NL  LSL  N+        L  L N+  L
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILT---NLDELSLNGNQLKD--IGTLASLTNLTDL 246

Query: 686 DLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKG 745
           DL++N IS + P   +  T +T  K     + +          L    +  +  +   + 
Sbjct: 247 DLANNQISNLAP--LSGLTKLTELKLGANQISN-------ISPLAGLTALTNLELNENQL 297

Query: 746 SQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSL 805
                 S L  +  L L  N +    P  +  L  L  L  + N ++      +  L ++
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 806 DFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYN 837
           ++L    NQ     P  L+ L+R++ + L+  
Sbjct: 354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.9 bits (167), Expect = 9e-13
 Identities = 69/406 (16%), Positives = 143/406 (35%), Gaps = 31/406 (7%)

Query: 220 LISCDLPPTIPSSDLYLNSSTSLEVIVILG-NNLTDSIYPWLFNVSSNLVELINLGSNQL 278
           L S  +    P + ++ +++ + ++  +LG  N+TD++     +    +  L       +
Sbjct: 1   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLD---QVTTL-QADRLGI 56

Query: 279 QGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSD 338
           + SI +   ++ +L  +  ++NQ  +I   L N+  L  + ++ N +             
Sbjct: 57  K-SI-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITPLANLTNLT 113

Query: 339 GCTKTSLAWLFLDSNEITGSLP-------NFGGFSSLKRLSIANNRLNGTINKSVGQLVK 391
           G T  +     +D  +   +L             S+L  L+       G     +  L  
Sbjct: 114 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN 173

Query: 392 LESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKI 451
           L +L   + S   V   + L+ L+NL  L   +N ++       +    L +++L   ++
Sbjct: 174 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQL 231

Query: 452 GPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRF 511
             +    L +   +  LD++N+ IS+  P         L+   L  NQI    P      
Sbjct: 232 --KDIGTLASLTNLTDLDLANNQISNLAPLSGLT---KLTELKLGANQISNISPLAGLTA 286

Query: 512 HPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLL 571
                  +              L  ++L L  N  S            KL  +  +NN +
Sbjct: 287 LTNLELNENQLEDISPISNLKNL--TYLTLYFNNISDISPVSSL---TKLQRLFFANNKV 341

Query: 572 SGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNN 617
           S       +   ++  L+  +N      P  +  L  +  L L + 
Sbjct: 342 SD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.5 bits (153), Expect = 5e-11
 Identities = 66/370 (17%), Positives = 138/370 (37%), Gaps = 21/370 (5%)

Query: 136 SLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLS 195
           +L++     L  T     +     +L ++  L      + S + +E+L++L+    ++ S
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGVEYLNNLT---QINFS 74

Query: 196 FSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDS 255
            + L+  +     L+KL  +        D+ P    ++L   +  + ++  I  + L + 
Sbjct: 75  NNQLTDITPLKN-LTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI--DPLKNL 131

Query: 256 IYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNL 315
                  +SSN +  I+  S             +  L  L   +   R    S       
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 316 KSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIAN 375
               L+        +  I +++     T+L  L L+ N++   +      ++L  L +AN
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLAN 250

Query: 376 NRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDW 435
           N+++      +  L KL  L L  N +  +   A L+ L+NL +                
Sbjct: 251 NQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE-----DISPI 303

Query: 436 IPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNL 495
                L+ + L    I    P  + +  ++  L  +N+ +SD   +   N T N+++ + 
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLT-NINWLSA 358

Query: 496 SNNQIKGKLP 505
            +NQI    P
Sbjct: 359 GHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.1 bits (139), Expect = 2e-09
 Identities = 46/254 (18%), Positives = 90/254 (35%), Gaps = 46/254 (18%)

Query: 70  CCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSS 129
                 ++ +  +       L  L+   +   + +  + L IL +L  L L+GN      
Sbjct: 176 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-- 233

Query: 130 IPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSL 189
               + SL+ L+ L L+N + +   P  L  L++L  L +G N + +   L  L+ L+  
Sbjct: 234 -IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT-- 288

Query: 190 IYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILG 249
                +          +  +S L +L  L L   ++    P S L     T L+ +    
Sbjct: 289 -----NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL-----TKLQRLFFAN 338

Query: 250 NNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSL 309
           N ++D                              +  ++ ++N L    NQ  ++   L
Sbjct: 339 NKVSD----------------------------VSSLANLTNINWLSAGHNQISDLT-PL 369

Query: 310 GNMCNLKSLTLSYN 323
            N+  +  L L+  
Sbjct: 370 ANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.8 bits (185), Expect = 2e-15
 Identities = 53/322 (16%), Positives = 100/322 (31%), Gaps = 50/322 (15%)

Query: 71  CGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSI 130
           C  R V CS+            L+  P             +      LDL  N  +    
Sbjct: 10  CHLRVVQCSDLG----------LEKVPKD-----------LPPDTALLDLQNNKITEI-K 47

Query: 131 PEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSL---------------- 174
                +L  L  L L N + +   P     L +L+ L +  N L                
Sbjct: 48  DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV 107

Query: 175 ----ISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
               I+       + L+ +I ++L  + L            +  L  + +   ++     
Sbjct: 108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI----- 162

Query: 231 SSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMP 290
            + +      SL  + + GN +T      L  +  N +  + L  N +      +  + P
Sbjct: 163 -TTIPQGLPPSLTELHLDGNKITKVDAASLKGL--NNLAKLGLSFNSISAVDNGSLANTP 219

Query: 291 SLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFL 350
            L  L L +N+  ++P  L +   ++ + L  N +    S           K S + + L
Sbjct: 220 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 279

Query: 351 DSNEITGSLPNFGGFSSLKRLS 372
            SN +         F  +   +
Sbjct: 280 FSNPVQYWEIQPSTFRCVYVRA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 4e-14
 Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 21/284 (7%)

Query: 561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT 620
              +DL NN ++      +    +L  L L NN      P +   L  L+ L L  N+L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 621 GELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLA 680
                      +L + +     +   +   +    + +V L     K +G        + 
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 681 NVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLK--TTKSYFDK 738
            +  + ++  NI+ I      + T         L L  N  T +   SLK     +    
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLT--------ELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 739 AVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTG----- 793
           +  +         +    ++ L L++NKL  +VP  + D   +  + L  N ++      
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 794 -QITPKIGQLKSLDFLDLSRN--QFFGSIPSSLSQLSRLSVMDL 834
                   +  S   + L  N  Q++   PS+   +   + + L
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.9 bits (167), Expect = 5e-13
 Identities = 54/244 (22%), Positives = 88/244 (36%), Gaps = 11/244 (4%)

Query: 598 KIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVN 657
           K+P  +    +   L L NN++T      F N   L  + L  N +S   P      LV 
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVK 80

Query: 658 LVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI 717
           L  L L  N+    +P ++     +Q L +  N I+ +    FN    M   +     L 
Sbjct: 81  LERLYLSKNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 137

Query: 718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD 777
           S+   + A+  +K          +         Q     +  L L  NK+       +  
Sbjct: 138 SSGIENGAFQGMKKLSYIR----IADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG 193

Query: 778 LAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYN 837
           L  L  L LS N+++      +     L  L L+ N     +P  L+    + V+ L  N
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN-NNKLVKVPGGLADHKYIQVVYLHNN 252

Query: 838 NLSG 841
           N+S 
Sbjct: 253 NISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.4 bits (158), Expect = 6e-12
 Identities = 49/312 (15%), Positives = 107/312 (34%), Gaps = 26/312 (8%)

Query: 313 CNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRL 371
           C+L+ +  S       L ++ ++L         A L L +N+IT      F    +L  L
Sbjct: 10  CHLRVVQCSDL----GLEKVPKDLP-----PDTALLDLQNNKITEIKDGDFKNLKNLHTL 60

Query: 372 SIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEF 431
            + NN+++     +   LVKLE L+L  N L+  + E     L  L +       +    
Sbjct: 61  ILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKS- 118

Query: 432 SHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLS 491
             + +    + ++     K         +   ++  + I+++ I+            +L+
Sbjct: 119 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP----SLT 174

Query: 492 FFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSIS 551
             +L  N+I           +     + +S N           N   L       +  + 
Sbjct: 175 ELHLDGNKITKVDAASLKGLNNLAK-LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 233

Query: 552 FLCSITG-HKLDYIDLSNNLLSG------RLPDCWSQFDSLAILNLANN--SFFGKIPDS 602
               +     +  + L NN +S         P   ++  S + ++L +N   ++   P +
Sbjct: 234 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 293

Query: 603 IGFLKNLQSLSL 614
              +    ++ L
Sbjct: 294 FRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.4 bits (145), Expect = 3e-10
 Identities = 41/256 (16%), Positives = 77/256 (30%), Gaps = 5/256 (1%)

Query: 415 SNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSG 474
            +  +L L +N +T     D+     L  + L + KI    P       ++  L +S + 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 475 ISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPL 534
           + +                N      K     L+           + S+  E    Q   
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 535 NASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNS 594
             S++ ++    +     L       L  + L  N ++          ++LA L L+ NS
Sbjct: 151 KLSYIRIADTNITTIPQGLPP----SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 595 FFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEG 654
                  S+    +L+ L L NN+L         +   + ++ L  N +S          
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY-IQVVYLHNNNISAIGSNDFCPP 265

Query: 655 LVNLVVLSLKSNKFNG 670
             N    S        
Sbjct: 266 GYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 2e-04
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG 817
           +++  S   L  +VP+++        L+L  N +T         LK+L  L L  N+   
Sbjct: 13  RVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 818 SIPSSLSQLSRLSVMDLSYNNLSG 841
             P + + L +L  + LS N L  
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKE 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 22/108 (20%), Positives = 36/108 (33%)

Query: 757 VKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFF 816
             +LDL +NK+      +  +L  L  L L  N ++         L  L+ L LS+NQ  
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 817 GSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNELCG 864
                    L  L V +     +   + +G              +  G
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 3e-12
 Identities = 42/258 (16%), Positives = 85/258 (32%), Gaps = 12/258 (4%)

Query: 392 LESLFLHNNSLRGVISEAFLSNLSNLTILY-LADNSLTLEFSHDWIPPFQLSQVNLGSCK 450
            + +FLH N +  V + +F     NLTIL+  ++    ++ +               + +
Sbjct: 34  SQRIFLHGNRISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 451 IGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSR 510
           +    P       ++ +L +   G+ +  P  F      L +  L +N ++    + + R
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPDD-TFR 150

Query: 511 FHPYRPGIDISSNQFEGPIPQLPLNASFL---NLSKNKFSGSISFLCSITGHKLDYIDLS 567
                  + +  N+      +       L    L +N+ +          G     + L 
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL-MTLYLF 209

Query: 568 NNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFF 627
            N LS    +  +   +L  L L +N +      +      LQ     ++ +   LP   
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQRL 268

Query: 628 TNGSQLTLMDLGKNGLSG 645
                  L  L  N L G
Sbjct: 269 AG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 2e-11
 Identities = 59/290 (20%), Positives = 89/290 (30%), Gaps = 14/290 (4%)

Query: 554 CSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLS 613
           C                L   +P       +   + L  N        S    +NL  L 
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 614 LYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIP 673
           L++N L     + FT  + L  +DL  N     +      GL  L  L L         P
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 674 LQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTK 733
                LA +Q L L  N +  +    F +   +TH     L L  N  +S+   + +   
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH-----LFLHGNRISSVPERAFRGLH 177

Query: 734 S--YFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTL 791
           S                     LG +  L L +N L     E +  L  L  L L+ N  
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Query: 792 TGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSG 841
                        L     S ++   S+P  L+      +  L+ N+L G
Sbjct: 238 VCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 2e-10
 Identities = 54/271 (19%), Positives = 92/271 (33%), Gaps = 18/271 (6%)

Query: 111 ILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIG 170
           I      + L GN  S         +   L+ L L +   A         L+ L+ LD+ 
Sbjct: 30  IPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
            N+ +   +      L  L  L L             +   L +L+ LYL    L     
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHL--DRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 231 SSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMP 290
            +        +L  + + GN ++         + S  ++ + L  N++    P AF  + 
Sbjct: 147 DT---FRDLGNLTHLFLHGNRISSVPERAFRGLHS--LDRLLLHQNRVAHVHPHAFRDLG 201

Query: 291 SLNTLFLASNQFREI-PKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLF 349
            L TL+L +N    +  ++L  +  L+ L L+ N    D                L    
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-------WAWLQKFR 254

Query: 350 LDSNEITGSLPNFGGFSSLKRLSIANNRLNG 380
             S+E+  SLP     +      +A N L G
Sbjct: 255 GSSSEVPCSLPQR--LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 6e-09
 Identities = 43/267 (16%), Positives = 72/267 (26%), Gaps = 30/267 (11%)

Query: 461 NQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDI 520
                ++      G+   VP      +  +    L  N+I                    
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIPAASQRI---FLHGNRISHVPAASFRACRNLTILWLH 64

Query: 521 SSNQFEGPIPQLPLNASFLN--LSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDC 578
           S+             A      LS N    S+         +L  + L    L    P  
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 579 WSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638
           +    +L  L L +N+      D+   L NL  L L+ NR++      F     L  + L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 639 GKNGLSGEIPTWI-----------------------GEGLVNLVVLSLKSNKFNGSIPLQ 675
            +N ++   P                             L  L  L L  N +      +
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244

Query: 676 LCHLANVQILDLSSNNISGIIPKCFNN 702
               A +Q    SS+ +   +P+    
Sbjct: 245 P-LWAWLQKFRGSSSEVPCSLPQRLAG 270

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 5e-08
 Identities = 55/266 (20%), Positives = 95/266 (35%), Gaps = 16/266 (6%)

Query: 265 SNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNT 324
               + I L  N++      +F    +L  L+L SN    I  +      L  L     +
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA--AFTGLALLEQLDLS 88

Query: 325 LRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGF-SSLKRLSIANNRLNGTIN 383
               L  +      G  +  L  L LD   +    P      ++L+ L + +N L    +
Sbjct: 89  DNAQLRSVDPATFHGLGR--LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 384 KSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQ 443
            +   L  L  LFLH N +  V   AF   L +L  L L  N +     H +    +L  
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 444 VNLGSCKIGPRFPKWLRNQNQILSLDIS-NSGISDTVPNWFWNQTYNLSFFNLSNNQIKG 502
           + L +  +     + L     +  L ++ N  + D      W     L  F  S++++  
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA---WLQKFRGSSSEVPC 262

Query: 503 KLP-NLSSRFHPYRPGIDISSNQFEG 527
            LP  L+      R    +++N  +G
Sbjct: 263 SLPQRLAG-----RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 45/269 (16%), Positives = 79/269 (29%), Gaps = 30/269 (11%)

Query: 599 IPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNL 658
           +P  I      Q + L+ NR++    + F     LT++ L  N L+           +  
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 659 VVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS 718
            +    + +     P     L  +  L L    +  + P  F    A+ +       L  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY-----LQD 138

Query: 719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDL 778
           N   +L  D+ +   +                         L L  N++          L
Sbjct: 139 NALQALPDDTFRDLGNLT----------------------HLFLHGNRISSVPERAFRGL 176

Query: 779 AGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNN 838
             L  L L +N +          L  L  L L  N        +L+ L  L  + L+ N 
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

Query: 839 LSGKIPSGTQLQSFSTSMYAGNEL-CGLP 866
                 +            + +E+ C LP
Sbjct: 237 WVCDCRARPLWAWLQKFRGSSSEVPCSLP 265

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 32/175 (18%), Positives = 49/175 (28%), Gaps = 28/175 (16%)

Query: 671 SIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLK 730
           ++P+ +   A  Q + L  N IS +    F            NLT++  +   LA     
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACR--------NLTILWLHSNVLARIDAA 74

Query: 731 TTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNT 790
                     L    +                    L    P     L  L  L+L R  
Sbjct: 75  AFTGLALLEQLDLSDNAQ------------------LRSVDPATFHGLGRLHTLHLDRCG 116

Query: 791 LTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845
           L          L +L +L L  N        +   L  L+ + L  N +S     
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 5e-11
 Identities = 35/214 (16%), Positives = 63/214 (29%), Gaps = 15/214 (7%)

Query: 115 LTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSL 174
              ++    N +  ++P  +      + L LS           L   +RL  L++    L
Sbjct: 12  HLEVNCDKRNLT--ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 175 ISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDL 234
              +    L  L +L        +L      +              +       + S  L
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPA----------LTVLDVSFNRLTSLPL 117

Query: 235 YLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNT 294
                      + L  N   ++ P L    +  +E ++L +N L          + +L+T
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLT-PTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 295 LFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGD 328
           L L  N    IPK       L    L  N    +
Sbjct: 177 LLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 35/187 (18%), Positives = 57/187 (30%), Gaps = 21/187 (11%)

Query: 671 SIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTH------------------EKGS 712
           ++P  L    +  IL LS N +          +T +T                     G+
Sbjct: 24  ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81

Query: 713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVP 772
                +   +           +  D +              LG ++ L L  N+L    P
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

Query: 773 EEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVM 832
             +     L  L+L+ N LT      +  L++LD L L  N  + +IP        L   
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200

Query: 833 DLSYNNL 839
            L  N  
Sbjct: 201 FLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 35/180 (19%), Positives = 55/180 (30%), Gaps = 14/180 (7%)

Query: 467 SLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-----GKLPNLSSRFHPYRPGIDIS 521
            L +S + +           T  L+  NL   ++      G LP L +    +     + 
Sbjct: 35  ILHLSENLLYTFSLATLMPYT-RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP 93

Query: 522 SNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQ 581
                 P   +                S+         +L  + L  N L    P   + 
Sbjct: 94  LLGQTLPALTVLDV-------SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 582 FDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKN 641
              L  L+LANN+        +  L+NL +L L  N L   +P  F     L    L  N
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 39/241 (16%), Positives = 64/241 (26%), Gaps = 36/241 (14%)

Query: 576 PDCW-SQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLT 634
           P C  S+  S   +N    +    +P  +   K+   L L  N L     +     ++LT
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 635 LMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISG 694
            ++L +          +   L  L  L L  N+      L     A   +    +   S 
Sbjct: 59  QLNLDRA---ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 695 IIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTL 754
            +                N                              K       +  
Sbjct: 116 PLGALRGLGELQELYLKGN----------------------------ELKTLPPGLLTPT 147

Query: 755 GLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQ 814
             ++ L L++N L       +  L  L  L L  N+L   I         L F  L  N 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206

Query: 815 F 815
           +
Sbjct: 207 W 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 6e-04
 Identities = 39/235 (16%), Positives = 73/235 (31%), Gaps = 32/235 (13%)

Query: 385 SVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQV 444
            V ++     +     +L  +  +       + TIL+L++N L        +P  +L+Q+
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 445 NLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKL 504
           NL   +        L+    +  L   +   +         QT         +      L
Sbjct: 61  NLDRAE-----LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 505 PNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYI 564
           P  + R       + +  N+ +   P L                           KL+ +
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTP----------------------TPKLEKL 153

Query: 565 DLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRL 619
            L+NN L+       +  ++L  L L  NS +  IP        L    L+ N  
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 774 EIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMD 833
           E+  +A  + +N  +  LT  + P +   K    L LS N  +    ++L   +RL+ ++
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 834 LSYNN 838
           L    
Sbjct: 62  LDRAE 66

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 6e-09
 Identities = 38/249 (15%), Positives = 78/249 (31%), Gaps = 10/249 (4%)

Query: 73  WRGVNCSNRT------GHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFS 126
           W+ ++ + +       G +    +   +            +       + ++DLS +   
Sbjct: 2   WQTLDLTGKNLHPDVTGRLLSQGVIAFRC--PRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59

Query: 127 GSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGE-NLEWLSH 185
            S++   +   SKL  L L     + PI   L   S L  L++   S  S       LS 
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 186 LSSLIYLDLSFSNLSKFSNWMQVLSK-LDSLKALYLISCDLPPTIPSSDLYLNSSTSLEV 244
            S L  L+LS+       +    ++   +++  L L               +    +L  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 245 IVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE 304
           + +  + +  +     F   + L  L       +        G +P+L TL +       
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 305 IPKSLGNMC 313
             + L    
Sbjct: 240 TLQLLKEAL 248

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 36/264 (13%), Positives = 84/264 (31%), Gaps = 12/264 (4%)

Query: 588 LNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEI 647
           L+L   +    +   +   + + +     + +   L   F+   ++  MDL  + +    
Sbjct: 5   LDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEVST 62

Query: 648 PTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILD------LSSNNISGIIPKCFN 701
              I      L  LSL+  + +  I   L   +N+  L+       S   +  ++  C  
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 702 NFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILD 761
                                +   +++        +  L         +    LV +  
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 762 LSSNKLGGEVPEEIMDLAGLIALNLSR-NTLTGQITPKIGQLKSLDFLDLSRNQFFGSIP 820
             S  L  +  +E   L  L  L+LSR   +  +   ++G++ +L  L +      G++ 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 821 SSLSQLSRLSVMDLSYNNLSGKIP 844
                L  L    ++ ++ +    
Sbjct: 243 LLKEALPHL---QINCSHFTTIAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 9e-06
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 756 LVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQF 815
           L + LDL+   L  +V   ++   G+IA    R+ +  Q   +      +  +DLS +  
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMD-QPLAEHFSPFRVQHMDLSNSVI 58

Query: 816 -FGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845
              ++   LSQ S+L  + L    LS  I +
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVN 89

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 1/101 (0%)

Query: 518 IDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGR-LP 576
           +D++       +    L+   +     +           +  ++ ++DLSN+++    L 
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 64

Query: 577 DCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNN 617
              SQ   L  L+L        I +++    NL  L+L   
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 105

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 37/174 (21%), Positives = 67/174 (38%), Gaps = 5/174 (2%)

Query: 518 IDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPD 577
           +D +    +     +PL+ + L L+ N+     S         L  ++L  N L+G  P+
Sbjct: 13  VDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72

Query: 578 CWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMD 637
            +     +  L L  N            L  L++L+LY+N+++  +P  F + + LT ++
Sbjct: 73  AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132

Query: 638 LGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNN 691
           L  N  +             L   SL         P     + +VQI DL  + 
Sbjct: 133 LASNPFNCNCHLAW--FAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSE 181

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (130), Expect = 2e-08
 Identities = 50/450 (11%), Positives = 114/450 (25%), Gaps = 21/450 (4%)

Query: 264 SSNLVELINLGSNQLQGS-IPEAFGHMPSLNTLFLASNQF-----REIPKSLGNMCNLKS 317
           S ++  L ++   +L  +   E    +     + L          ++I  +L     L  
Sbjct: 1   SLDIQSL-DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 318 LTLSYNTLRGD-LSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANN 376
           L L  N L    +  ++Q L     K  +  L L +  +T       G  S    ++   
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCK--IQKLSLQNCCLT---GAGCGVLSSTLRTLPTL 114

Query: 377 RLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWI 436
           +     +  +G            +    +          +        + L  +     +
Sbjct: 115 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 174

Query: 437 PPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLS 496
                     G   +             +       +  +            +L    L 
Sbjct: 175 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 234

Query: 497 NNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSI 556
           +N++             +      +   +E  I           L   +    +S   + 
Sbjct: 235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 294

Query: 557 TGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYN 616
            G +   +     L  G   +              ++       +       + +  L +
Sbjct: 295 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 354

Query: 617 NRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLV---NLVVLSLKSNKFNGSIP 673
             +          GS L ++ L    +S    + +   L+   +L  L L +N    +  
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414

Query: 674 LQLC-----HLANVQILDLSSNNISGIIPK 698
           LQL          ++ L L     S  +  
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (122), Expect = 2e-07
 Identities = 60/456 (13%), Positives = 126/456 (27%), Gaps = 27/456 (5%)

Query: 390 VKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQ----LSQVN 445
           + ++SL +    L        L  L    ++ L D  LT     D     +    L+++N
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 446 LGSCKIGPRFPKWL-----RNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQI 500
           L S ++G      +         +I  L + N  ++        +    L      +   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 501 KGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHK 560
                   +       G+     + E    +    ++           +      +T   
Sbjct: 122 N---LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 178

Query: 561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSL-YNNRL 619
            D  +    +L   L D   Q ++L + +    S   +    I   K         +N+L
Sbjct: 179 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 238

Query: 620 TGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHL 679
                +    G       L    +     T  G G +  V+ + +S K       +L   
Sbjct: 239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 298

Query: 680 ANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKA 739
               + +        +      + +          ++++     L      +     D  
Sbjct: 299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ--ISNNRLEDAG 356

Query: 740 VLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD----LAGLIALNLSRNTLTGQI 795
           V        +  S L   ++L L+   +       +         L  L+LS N L    
Sbjct: 357 VRELCQGLGQPGSVL---RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 796 TPKIGQ-----LKSLDFLDLSRNQFFGSIPSSLSQL 826
             ++ +        L+ L L    +   +   L  L
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 5e-06
 Identities = 46/454 (10%), Positives = 96/454 (21%), Gaps = 18/454 (3%)

Query: 239 STSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQG----SIPEAFGHMPSLNT 294
           S  ++ + I    L+D+ +  L  +      +  L    L       I  A    P+L  
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVV-RLDDCGLTEARCKDISSALRVNPALAE 59

Query: 295 LFLASNQFR-EIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSN 353
           L L SN+        +       S  +   +L+              T  +L  L     
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 354 EITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSN 413
                            L          +          E L     +          +N
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 414 LSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNS 473
             N   + +    L            +   V   +C+          +  ++        
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 474 GISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLP 533
            +             +                                 +     +    
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 534 LNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANN 593
                            S                +++L+        Q  +  + +    
Sbjct: 300 AR-LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 358

Query: 594 SFFGKIPDSIGFLKNLQSLSLYNNRLTGE----LPSFFTNGSQLTLMDLGKNGLSGEIPT 649
                +      L+    L L +  ++      L +       L  +DL  N L      
Sbjct: 359 ELCQGLGQPGSVLR---VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 650 WIGEGLVN----LVVLSLKSNKFNGSIPLQLCHL 679
            + E +      L  L L    ++  +  +L  L
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 7e-06
 Identities = 12/97 (12%), Positives = 26/97 (26%), Gaps = 5/97 (5%)

Query: 115 LTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEF----AGPIPLQLGNLSRLQVLDIG 170
           +  LD+     S +   E +  L +   + L +          I   L     L  L++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQ 207
            N  +    +  +          +   +L        
Sbjct: 64  SNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 99

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 66/488 (13%), Positives = 122/488 (25%), Gaps = 43/488 (8%)

Query: 188 SLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSS-DLYLNSSTSLEVIV 246
            +  LD+    LS  + W ++L  L   + + L  C L           L  + +L  + 
Sbjct: 3   DIQSLDIQCEELSD-ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 247 ILGNNLTDS----IYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQF 302
           +  N L D     +   L   S  + +L +L +  L G+                  +  
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKL-SLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 303 REIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNF 362
             +    G     + L      L     E     +  C   +         +      N 
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 363 GGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYL 422
              +           L   +  S  QL  L+       S         +++ ++L  L L
Sbjct: 181 INEAG-------VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 233

Query: 423 ADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNW 482
             N L      +  P        L +  I           +    L    S    ++   
Sbjct: 234 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 293

Query: 483 FWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLS 542
                                                  S+        L       N  
Sbjct: 294 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA-QNRFLLELQISNNRL 352

Query: 543 KNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDS 602
           ++     +       G  L  + L++  +S                    +S    +  +
Sbjct: 353 EDAGVRELCQGLGQPGSVLRVLWLADCDVS--------------------DSSCSSLAAT 392

Query: 603 IGFLKNLQSLSLYNNRLTGE-----LPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVN 657
           +    +L+ L L NN L        + S    G  L  + L     S E+   +     +
Sbjct: 393 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKD 452

Query: 658 ---LVVLS 662
              L V+S
Sbjct: 453 KPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 5e-05
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 757 VKILDLSSNKLGGEVPEEIMD-LAGLIALNLSRNTLTGQ----ITPKIGQLKSLDFLDLS 811
           ++ LD+   +L      E++  L     + L    LT      I+  +    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 812 RNQFFGSIPSSLSQLSRLSVMDLSYNNLSG 841
            N+        + Q  +     +   +L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 784 LNLSRNTLTGQITPKI-GQLKSLDFLDLSRNQF----FGSIPSSLSQLSRLSVMDLSYNN 838
           L++    L+     ++   L+    + L            I S+L     L+ ++L  N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 839 LSGKIPS 845
           L      
Sbjct: 67  LGDVGVH 73

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 7e-04
 Identities = 52/451 (11%), Positives = 106/451 (23%), Gaps = 17/451 (3%)

Query: 367 SLKRLSIANNRLNGT-INKSVGQLVKLESLFLHNNSLRGVISEAF---LSNLSNLTILYL 422
            ++ L I    L+     + +  L + + + L +  L     +     L     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 423 ADNSLTLEFSHDWIPPFQ-----LSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISD 477
             N L     H  +   Q     + +++L +C +       L +  + L          +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 478 TVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNAS 537
            + +                 +         S          + +      +     + +
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 538 FLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFG 597
              +         S               S+N                  L        G
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 598 KIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVN 657
                 G L     L        G       +  ++         LS        EG   
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 658 LVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI 717
           L    L+      S+ ++ C          SS                   + G      
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD 777
                      L         +  +   +      +L   + LDLS+N LG     ++++
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL---RELDLSNNCLGDAGILQLVE 419

Query: 778 -----LAGLIALNLSRNTLTGQITPKIGQLK 803
                   L  L L     + ++  ++  L+
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 49/447 (10%), Positives = 108/447 (24%), Gaps = 30/447 (6%)

Query: 314 NLKSLTLSYNTLR-GDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLS 372
           +++SL +    L     +E++  L   C    L    L                +L  L+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQ-CQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 373 IANNRLNGTINKSVGQLVKLESLFLHNNSLRGV------------------------ISE 408
           + +N L       V Q ++  S  +   SL+                          +S+
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 409 AFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSL 468
             L +     +     +                +        +    P +         +
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 469 DISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGP 528
           + +   +          Q   L   +        +              + + SN+    
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 529 IPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAIL 588
                        S+ +         +  G       L        L    ++       
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 589 NLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIP 648
            L              ++K+    +   +  +  L             +  ++    E+ 
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 649 TWIGEGLVNLVVLSLKSNKFNG----SIPLQLCHLANVQILDLSSNNISGIIPKCFNNFT 704
             +G+    L VL L     +     S+   L    +++ LDLS+N +            
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 705 AMTHEKGSNLTLISNYYTSLAYDSLKT 731
                    L L   Y++    D L+ 
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 105 ISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSL----SKLSYLGLSNTEFAGPIPLQLGN 160
           ++++LL    L  LDLS N    + I + + S+      L  L L +  ++  +  +L  
Sbjct: 389 LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 448

Query: 161 L 161
           L
Sbjct: 449 L 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.003
 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 113 QHLTYLDLSGNNFSG---SSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLG-----NLSRL 164
             L  L L+  + S    SS+   + +   L  L LSN        LQL          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 165 QVLDIGFNSLISGENLEWLSHL 186
           + L +      S E  + L  L
Sbjct: 429 EQLVLYDIY-WSEEMEDRLQAL 449

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 53/335 (15%), Positives = 97/335 (28%), Gaps = 26/335 (7%)

Query: 265 SNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNT 324
               EL  L +  L  S+PE   H   L +L  + N   E+P+      +LKSL +  N 
Sbjct: 38  RQAHEL-ELNNLGLS-SLPELPPH---LESLVASCNSLTELPELP---QSLKSLLVDNNN 89

Query: 325 LRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINK 384
           L+  LS++   L       +      +    +         +SLK+L      L      
Sbjct: 90  LKA-LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148

Query: 385 SVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQV 444
           +       E   L   +     + +          L        +      +        
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 445 NLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKL 504
                 +    P    +   +   D   + + +   +  +       F  LS        
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268

Query: 505 PNLSSRFHPYRPG-------IDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSIT 557
            N SS               +++S+N+    +P LP     L  S N  +       +  
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLIASFNHLAEVPELPQN-- 325

Query: 558 GHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLAN 592
              L  + +  N L    PD     +S+  L + +
Sbjct: 326 ---LKQLHVEYNPLRE-FPDI---PESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 48/330 (14%), Positives = 91/330 (27%), Gaps = 27/330 (8%)

Query: 366 SSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
                L + N  L+ ++ +    L   ESL    NSL  +       +L +L +      
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLTEL--PELPQSLKSLLVDNNNLK 91

Query: 426 SLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWN 485
           +L+             +Q+          F K +   N  L          + +      
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 486 QTYNLSFFNLSNNQIKGK-LPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKN 544
                   NL           +L            I +            N  FL     
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 545 KFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAIL----------NLANNS 594
             +   +        +   +  +       LP   +  D    +              N+
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 595 FFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEG 654
              +I        +L+ L++ NN+L  ELP+       L  +    N L+ E+P      
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQ-- 324

Query: 655 LVNLVVLSLKSNKFNGSIPLQLCHLANVQI 684
             NL  L ++ N      P     + ++++
Sbjct: 325 --NLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 49/319 (15%), Positives = 91/319 (28%), Gaps = 24/319 (7%)

Query: 114 HLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNS 173
               L+L+    S  S+PE    L  L     S       +P    +L  L V +    +
Sbjct: 39  QAHELELNNLGLS--SLPELPPHLESLV---ASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 174 LISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSD 233
           L     L     +S+     L     S F   +          +L  +    P     + 
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIID-----VDNNSLKKLPDLPPSLEFIAA 147

Query: 234 LYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLN 293
                    E+  +       +    L  +    + L ++ +            ++P L 
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 294 TLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNL----SDGCTKTSLAWLF 349
           T++  +N  + +P    ++  L         L      +                   L+
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267

Query: 350 LDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEA 409
             +              SL+ L+++NN+L   +        +LE L    N L  V    
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAEVPEL- 322

Query: 410 FLSNLSNLTILYLADNSLT 428
                 NL  L++  N L 
Sbjct: 323 ----PQNLKQLHVEYNPLR 337

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 49/314 (15%), Positives = 85/314 (27%), Gaps = 19/314 (6%)

Query: 560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLK-------NLQSL 612
           +   ++L+N  LS  LP+       L  L  + NS   ++P+    LK       NL++L
Sbjct: 39  QAHELELNNLGLS-SLPELPPH---LESLVASCNSL-TELPELPQSLKSLLVDNNNLKAL 93

Query: 613 SLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSI 672
           S     L     S         L +     +       + +       L   +   N   
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 673 PLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTT 732
            L             + NN    +P    +  ++         L                
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 733 KSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLT 792
                   L         +            S             L+ L       N  +
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 793 GQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSF 852
            +I        SL+ L++S N+    +P+   +L RL     S+N+L+        L+  
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKL-IELPALPPRLERL---IASFNHLAEVPELPQNLKQL 329

Query: 853 STSMYAGNELCGLP 866
                  N L   P
Sbjct: 330 HVE---YNPLREFP 340

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 8e-04
 Identities = 52/309 (16%), Positives = 93/309 (30%), Gaps = 13/309 (4%)

Query: 111 ILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIG 170
           +  HL  L  S N+ +   +PE   SL  L     +    +   PL          L+  
Sbjct: 56  LPPHLESLVASCNSLT--ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 113

Query: 171 FNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIP 230
                S          +SL  L     +L   +     L +L  L+ L  ++        
Sbjct: 114 PELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS 173

Query: 231 SSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMP 290
              L     +   ++              L  +++   +   L +        EA     
Sbjct: 174 LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRD 233

Query: 291 SLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFL 350
           +  T      Q         N+ +  S            S  I++L D     SL  L +
Sbjct: 234 NYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP--SLEELNV 291

Query: 351 DSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAF 410
            +N++   LP       L+RL  + N L   + +       L+ L +  N LR       
Sbjct: 292 SNNKLI-ELP--ALPPRLERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLREF--PDI 342

Query: 411 LSNLSNLTI 419
             ++ +L +
Sbjct: 343 PESVEDLRM 351

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 47.2 bits (110), Expect = 5e-06
 Identities = 38/314 (12%), Positives = 79/314 (25%), Gaps = 19/314 (6%)

Query: 105 ISSSLLILQHLTYLDLSGNNFSG---SSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNL 161
           + + LL    +  + LSGN         + E I S   L     S+             L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 162 SRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLI 221
             L    +    L +    +     ++   L    S  +   +     + L       + 
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 222 SCDLPPTIPSSDLYLNSSTSLE----VIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQ 277
                  +           S+      +           +     + +  +    +    
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 278 LQGSIPEAFGHMPSL-----NTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEI 332
           ++  + E   +   L                 +  +L +  NL+ L L+   L    +  
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262

Query: 333 IQNLSDGCTKTSLAWLFLDSNEITGSLPN------FGGFSSLKRLSIANNRLNGTINKSV 386
           + +         L  L L  NEI                  L  L +  NR     +  V
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVV 321

Query: 387 GQLVKLESLFLHNN 400
            ++ ++ S      
Sbjct: 322 DEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 38/325 (11%), Positives = 88/325 (27%), Gaps = 30/325 (9%)

Query: 555 SITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSF----FGKIPDSIGFLKNLQ 610
           SI G  L    ++       +     + DS+  + L+ N+        + ++I   K+L+
Sbjct: 4   SIEGKSLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 611 SLSLYNN---RLTGELPSFF----------TNGSQLTLMDLGKNGLSGEIPTWIGEGLVN 657
                +    R+  E+P                  + L D      + E           
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 658 LVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI 717
           L  L L +N        ++        ++  + N   +          + +         
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL-RSIICGRNRLENGSMKEWAKT 181

Query: 718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD 777
              +  L    +       +             Q    L    +  ++     +   +  
Sbjct: 182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 241

Query: 778 LAGLIALNLSRNTLTGQITPKIGQ------LKSLDFLDLSRNQFFGSIPSSL-----SQL 826
              L  L L+   L+ +    +           L  L L  N+       +L      ++
Sbjct: 242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 301

Query: 827 SRLSVMDLSYNNLSGKIPSGTQLQS 851
             L  ++L+ N  S +     +++ 
Sbjct: 302 PDLLFLELNGNRFSEEDDVVDEIRE 326

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 42/310 (13%), Positives = 83/310 (26%), Gaps = 12/310 (3%)

Query: 367 SLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAF---LSNLSNLTILYLA 423
           SLK  +I       ++   + +   ++ + L  N++    +      +++  +L I   +
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 424 DNSLTLEFSHDWIPPFQLSQVNLGSCKIG-PRFPKWLRNQNQILSLDISNSGISDTVPNW 482
           D                L Q  L   K+   R             L    S  +     +
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 483 FWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLS 542
             N              ++    N  ++  P    I    N+ E    +        +  
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 543 KNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDS 602
            +      + +       L    L+       L    + F  L    LA           
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 603 IGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLV----NL 658
           +G       LS        +  S   N   L  + L  N +  +    +   +     +L
Sbjct: 248 LGLNDC--LLSARGAAAVVDAFSKLEN-IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 659 VVLSLKSNKF 668
           + L L  N+F
Sbjct: 305 LFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 7e-04
 Identities = 44/361 (12%), Positives = 85/361 (23%), Gaps = 45/361 (12%)

Query: 291 SLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFL 350
           SL    + +   + +   L    ++K + LS NT+  + +  +                 
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSE--------------- 53

Query: 351 DSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAF 410
                     N      L+    ++       ++    L  L    L    L  V     
Sbjct: 54  ----------NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103

Query: 411 LSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDI 470
               +    L            H  +    L    LG                   + + 
Sbjct: 104 AFGPTAQEPLI------DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA 157

Query: 471 SNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIP 530
                     N   N +         ++++   L  +    +  RP              
Sbjct: 158 PPLRSIICGRNRLENGSMKEWAKTFQSHRL---LHTVKMVQNGIRPEGIEHLLLEGLAYC 214

Query: 531 QLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQ------FDS 584
           Q        + +      S   +   +   L  + L++ LLS R                
Sbjct: 215 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 274

Query: 585 LAILNLANNSFFGKIPDSI-----GFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG 639
           L  L L  N        ++       + +L  L L  NR + E           +    G
Sbjct: 275 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

Query: 640 K 640
           +
Sbjct: 335 E 335

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 7/110 (6%)

Query: 587 ILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGE 646
           +L+LA+      +   +  L  +  L L +NRL    P+     + L  +++ +   +  
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPAL----AALRCLEVLQASDNAL 55

Query: 647 IPTWIGEGLVNLVVLSLKSNKFNGSIPLQ-LCHLANVQILDLSSNNISGI 695
                   L  L  L L +N+   S  +Q L     + +L+L  N++   
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 7/117 (5%)

Query: 104 TISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQ-LGNLS 162
           T+   L  L  +T+LDLS N            +L+ L  L +          +  + NL 
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENVDGVANLP 65

Query: 163 RLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM-QVLSKLDSLKAL 218
           RLQ L +  N L     ++ L     L+ L+L  ++L +      ++   L S+ ++
Sbjct: 66  RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 15/131 (11%)

Query: 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLS 330
           ++L    L  ++      +  +  L L+ N+ R +P +L  +  L+ L  S N       
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN------- 53

Query: 331 EIIQNLSDGCTKTSLAWLFLDSNEITG--SLPNFGGFSSLKRLSIANNRL---NGTINKS 385
             ++N+        L  L L +N +    ++        L  L++  N L    G   + 
Sbjct: 54  -ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 386 VGQLVKLESLF 396
              L  + S+ 
Sbjct: 113 AEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 165 QVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCD 224
           +VL +    L     L  L  L  + +LDLS + L      +  L  L+ L+A      +
Sbjct: 1   RVLHLAHKDL---TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57

Query: 225 LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQL---QGS 281
           +                L+ +++  N L  S           LV L NL  N L   +G 
Sbjct: 58  VDGVANLPR--------LQELLLCNNRLQQSAAIQPLVSCPRLVLL-NLQGNSLCQEEGI 108

Query: 282 IPEAFGHMPSLNTLF 296
                  +PS++++ 
Sbjct: 109 QERLAEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 12/130 (9%)

Query: 294 TLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSN 353
            L LA      +   L  +  +  L LS+N LR     +         + S   L     
Sbjct: 2   VLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE---- 56

Query: 354 EITGSLPNFGGFSSLKRLSIANNRLNGTIN-KSVGQLVKLESLFLHNNSLRGV--ISEAF 410
               ++        L+ L + NNRL  +   + +    +L  L L  NSL     I E  
Sbjct: 57  ----NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 411 LSNLSNLTIL 420
              L +++ +
Sbjct: 113 AEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 343 TSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
             +  L L  N +    P       L+ L  ++N         V  L +L+ L L NN L
Sbjct: 20  LLVTHLDLSHNRLRALPPALAALRCLEVLQASDN--ALENVDGVANLPRLQELLLCNNRL 77

Query: 403 RGVISEAFLSNLSNLTILYLADNSLT 428
           +   +   L +   L +L L  NSL 
Sbjct: 78  QQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 26/108 (24%)

Query: 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDF---------- 807
           ++L L+   L   V   +  L  +  L+LS N L     P +  L+ L+           
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALEN 57

Query: 808 ------------LDLSRNQFFG-SIPSSLSQLSRLSVMDLSYNNLSGK 842
                       L L  N+    +    L    RL +++L  N+L  +
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 8/108 (7%)

Query: 518 IDISSNQFEGP--IPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRL 575
           + ++         + QL    + L+LS N+       L ++   ++     +        
Sbjct: 3   LHLAHKDLTVLCHLEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL----EN 57

Query: 576 PDCWSQFDSLAILNLANNSFFG-KIPDSIGFLKNLQSLSLYNNRLTGE 622
            D  +    L  L L NN          +     L  L+L  N L  E
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 32/188 (17%), Positives = 77/188 (40%), Gaps = 11/188 (5%)

Query: 137 LSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSF 196
           L++     L  T     +     +L ++  L      + S + +E+L++L+ + + +   
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 74

Query: 197 SNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLT--- 253
           ++++   N  +++  L +   +  I+     T  +     N+  +    +    NL    
Sbjct: 75  TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 134

Query: 254 ---DSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLG 310
              ++I           ++ +N  SNQ+    P    ++ +L  L ++SN+  +I   L 
Sbjct: 135 LSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS-VLA 191

Query: 311 NMCNLKSL 318
            + NL+SL
Sbjct: 192 KLTNLESL 199

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 31/205 (15%), Positives = 63/205 (30%), Gaps = 17/205 (8%)

Query: 364 GFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLA 423
            F+   + ++    +   + ++  +L  ++ +  +N+ ++ V     +  L N+T L+L 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLN 76

Query: 424 DNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWF 483
            N LT     D  P   L  +                   + L            +    
Sbjct: 77  GNKLT-----DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 484 WNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSK 543
                   +   +       L  L+           IS       + +L      L LSK
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL----QNLYLSK 187

Query: 544 NKFSGSISFLCSITGHKLDYIDLSN 568
           N  S  +  L  +    LD ++L +
Sbjct: 188 NHIS-DLRALAGLK--NLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 22/192 (11%), Positives = 58/192 (30%), Gaps = 11/192 (5%)

Query: 136 SLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLS 195
           + ++     L        +      L+ +  +    + + S + +++L +++ L      
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK 79

Query: 196 FSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDS 255
            +++   +N   +         +  +S         S    ++      I  L +     
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI--SDINGLVHLPQLE 137

Query: 256 IYPWLFNVSSNLVELINLGSNQLQGSI------PEAFGHMPSLNTLFLASNQFREIPKSL 309
                 N  +++  L  L                     +  L  L+L+ N   ++  +L
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-AL 196

Query: 310 GNMCNLKSLTLS 321
             + NL  L L 
Sbjct: 197 AGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 26/205 (12%), Positives = 60/205 (29%), Gaps = 20/205 (9%)

Query: 631 SQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSN 690
           ++    +L K  ++  +       L ++  +   ++       +Q  +L NV  L L+ N
Sbjct: 24  AETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGN 78

Query: 691 NISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEY 750
            ++    K   N   +         +               +  +   + +       + 
Sbjct: 79  KLTD--IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 751 QSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDL 810
           +S       +   +        + +      I                +  L  L  L L
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQI-----------SDIVPLAGLTKLQNLYL 185

Query: 811 SRNQFFGSIPSSLSQLSRLSVMDLS 835
           S+N    S   +L+ L  L V++L 
Sbjct: 186 SKNHI--SDLRALAGLKNLDVLELF 208

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 42.8 bits (99), Expect = 6e-05
 Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 12/164 (7%)

Query: 355 ITGSLPNFGGFSSLKRLSIANNRLNGTINK------SVGQLVKLESLFLHNNSLRGVISE 408
           I  ++  F    S+         L+G I        ++  L   + L L  N++      
Sbjct: 7   IKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK---- 62

Query: 409 AFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSL 468
             +S+LS +  L +      L    + +     +   L            +     +  L
Sbjct: 63  --ISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL 120

Query: 469 DISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFH 512
            +SN+ I++            L    L+ N +       ++   
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 1e-04
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 5/143 (3%)

Query: 565 DLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELP 624
           +L    +  +L    S+    +   L +       PD +        L+  ++     L 
Sbjct: 3   ELKPEQVE-QLKLIMSKRYDGSQQAL-DLKGLRSDPD-LVAQNIDVVLNRRSSMAA-TLR 58

Query: 625 SFFTNGSQLTLMDLGKNGLSG-EIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQ 683
               N  +L  ++L  N L   +  + I +   NL +L+L  N+      L       ++
Sbjct: 59  IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118

Query: 684 ILDLSSNNISGIIPKCFNNFTAM 706
            L L  N++S          +A+
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAI 141

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 32/236 (13%), Positives = 57/236 (24%), Gaps = 11/236 (4%)

Query: 394 SLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT----LEFSHDWIPPFQLSQVNLGSC 449
                 + +  + S+       N   L      L       FS            N    
Sbjct: 12  VFLCQESKVTEIPSDLP----RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 450 KIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSS 509
            I       L   ++I     +N    +            L   N     +       S 
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 510 RFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNN 569
           +        +I+ +  E          S +          I           +     NN
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 570 LLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPS 625
            L     D +       IL+++           +  LK L++ S YN +   +LP+
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 28/223 (12%), Positives = 64/223 (28%), Gaps = 5/223 (2%)

Query: 599 IPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNL 658
           IP  +   +N   L     +L       F+    L  +++ +N +   I   +   L  L
Sbjct: 23  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 659 VVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS 718
             + ++       I  +           L SN     +P      +           +  
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDL 778
           +     ++  L              +       +   L ++    +N L     +     
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 779 AGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPS 821
           +G + L++SR  +    +  +  LK L        +    +P+
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 31/259 (11%), Positives = 68/259 (26%), Gaps = 28/259 (10%)

Query: 68  RDC-CGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFS 126
           R C C  R   C              +   PS            + ++   L        
Sbjct: 4   RICHCSNRVFLCQESK----------VTEIPSD-----------LPRNAIELRFVLTKLR 42

Query: 127 GSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHL 186
                        L  + +S  +    I   + +     +  +    +    NL +++  
Sbjct: 43  VI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFS----NLPKLHEIRIEKANNLLYINPE 97

Query: 187 SSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIV 246
           +     +L +  +S                   L+       I + +       S E ++
Sbjct: 98  AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 157

Query: 247 ILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP 306
           +  N              + L EL    +N L+    + F        L ++  +   +P
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 307 KS-LGNMCNLKSLTLSYNT 324
              L N+  L++ +     
Sbjct: 218 SYGLENLKKLRARSTYNLK 236

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 25/218 (11%), Positives = 56/218 (25%), Gaps = 21/218 (9%)

Query: 388 QLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT-------------LEFSHD 434
            L     +    +++   ++    ++L  +T L      +T             LE   +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN 73

Query: 435 WIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFN 494
            I      +      ++                  I    ++ T            +   
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 495 LSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLC 554
           L  +  +    +  +     +     ++   +          + L    NK S       
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS 193

Query: 555 SITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLAN 592
                 L  + L NN +S   P   +   +L I+ L N
Sbjct: 194 L---PNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 34/219 (15%), Positives = 67/219 (30%), Gaps = 16/219 (7%)

Query: 212 LDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTD----SIYPWLFNVSSNL 267
           L +   +     ++  T+  +DL       +  +   G  +T          L  +    
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADL-----DGITTLSAFGTGVTTIEGVQYLNNLIGLELKD 72

Query: 268 VELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRG 327
            ++ +L   +    I E       L  +   +         L +        L+  +   
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 328 DLSEIIQNLSDGCTKTSLAWLFLDSNEITGSL--PNFGGFSSLKRLSIANNRLNGTINKS 385
            L   +  +++      L  L   S               S L  L   +N+++      
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS--P 190

Query: 386 VGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLAD 424
           +  L  L  + L NN +  V     L+N SNL I+ L +
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 44/241 (18%), Positives = 81/241 (33%), Gaps = 35/241 (14%)

Query: 92  ILQVFPSPCLKGTISSSLLI-----------LQHLTYLDLSGNNFSGSSIPEFIGSLSKL 140
           I  +FP P L   I  +              L  +T L   G   +     E +  L+ L
Sbjct: 9   INVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI---EGVQYLNNL 65

Query: 141 SYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLS 200
             L L + +        L NL+++  L++  N L +   +  L  + +L       ++++
Sbjct: 66  IGLELKDNQI--TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 201 KFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWL 260
             +    +      L  +  IS     T        N+  S    +   + LT       
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA--- 180

Query: 261 FNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTL 320
                          N++    P     +P+L  + L +NQ  ++   L N  NL  +TL
Sbjct: 181 -------------DDNKISDISP--LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTL 224

Query: 321 S 321
           +
Sbjct: 225 T 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 34/220 (15%), Positives = 68/220 (30%), Gaps = 21/220 (9%)

Query: 606 LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKS 665
           L N   ++   + +T  +     +   +T +     G++  I     + L NL+ L LK 
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLELKD 72

Query: 666 NKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHE-----------KGSNL 714
           N+     PL+         L  +       I    +  T                  +  
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 715 TLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEE 774
            L  +         L    +    ++   + S     + L  +  L    NK+       
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISP 190

Query: 775 IMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQ 814
           +  L  LI ++L  N ++      +    +L  + L+ NQ
Sbjct: 191 LASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 27/201 (13%), Positives = 47/201 (23%), Gaps = 13/201 (6%)

Query: 653 EGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGI---------IPKCFNNF 703
             L N + ++   +    ++      L  +  L      ++ I         I     + 
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN 73

Query: 704 TAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLS 763
                    NLT I+    S       +  +           S      T          
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 764 SNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSL 823
                 ++              LS           +  L  L  L    N+     P  L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 824 SQLSRLSVMDLSYNNLSGKIP 844
           + L  L  + L  N +S   P
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP 212

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	956
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.98
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.16
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.47
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.41
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.59
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.46

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=5.8e-38  Score=339.61  Aligned_cols=295  Identities=32%  Similarity=0.477  Sum_probs=237.2

Q ss_pred             CCCHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCCcc--ccceeecCC--CCcEEEEECCCCCCCCCCCCcc--ccccc
Q 046848           35 RCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCG--WRGVNCSNR--TGHVYKLDLHILQVFPSPCLKG--TISSS  108 (956)
Q Consensus        35 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~--~~~v~~l~l~~~~~~~~~~l~g--~l~~~  108 (956)
                      .|.++|++||++||+++.+|. .+++|.   .++|||.  |+||+|+..  .+||++|+|++      ..+.|  ++|++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~------~~l~g~~~lp~~   71 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG------LNLPKPYPIPSS   71 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC------CCCSSCEECCGG
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCC---CCCCCCCCcCCCeEEeCCCCcEEEEEEECCC------CCCCCCCCCChH
Confidence            599999999999999998874 689997   4679994  999999864  34899999998      56766  67899


Q ss_pred             cccccCCCEEeCCC-CCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCC
Q 046848          109 LLILQHLTYLDLSG-NNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLS  187 (956)
Q Consensus       109 l~~l~~L~~L~Ls~-n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~  187 (956)
                      ++++++|++|||++ |.++|. +|+.|+++++|++|+|++|++.+..|..+..+.+|+++++++|.+ ....+..+.+++
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~-~~~~p~~l~~l~  149 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLP  149 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE-ESCCCGGGGGCT
T ss_pred             HhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccc-cccCchhhccCc
Confidence            99999999999987 788886 999999999999999999999988888899999999999998875 233344455555


Q ss_pred             CCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccc
Q 046848          188 SLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNL  267 (956)
Q Consensus       188 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L  267 (956)
                      +|+++++++|.                          +.+.+|  ..+......++.++++.|++++..|..+..+..  
T Consensus       150 ~L~~l~l~~n~--------------------------l~~~ip--~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~--  199 (313)
T d1ogqa_         150 NLVGITFDGNR--------------------------ISGAIP--DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL--  199 (313)
T ss_dssp             TCCEEECCSSC--------------------------CEEECC--GGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC--
T ss_pred             ccceeeccccc--------------------------cccccc--ccccccccccccccccccccccccccccccccc--
Confidence            55555555444                          444444  334444234577777778777777777766654  


Q ss_pred             cceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCE
Q 046848          268 VELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAW  347 (956)
Q Consensus       268 ~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~  347 (956)
                       ..++++.+...+.+|..+..+++++.+++++|.+.+.+..+..+++|+.|+|++|++++.+|+.+++++      +|++
T Consensus       200 -~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~------~L~~  272 (313)
T d1ogqa_         200 -AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK------FLHS  272 (313)
T ss_dssp             -SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT------TCCE
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCC------CCCE
Confidence             678888888888888888899999999999999888666788888999999999999888888888887      8888


Q ss_pred             EEccCCcCcccCCCCCCCCCCCEEEeecccc
Q 046848          348 LFLDSNEITGSLPNFGGFSSLKRLSIANNRL  378 (956)
Q Consensus       348 L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l  378 (956)
                      |+|++|+++|.+|.++.+++|+.+++++|+.
T Consensus       273 L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         273 LNVSFNNLCGEIPQGGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             EECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred             EECcCCcccccCCCcccCCCCCHHHhCCCcc
Confidence            8888888888888887888888888888863

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.98  E-value=1.8e-32  Score=296.16  Aligned_cols=258  Identities=33%  Similarity=0.594  Sum_probs=239.4

Q ss_pred             CceeEEECCCCCCCC--CCCccccCCCCCCEEEcCC-CcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcE
Q 046848          559 HKLDYIDLSNNLLSG--RLPDCWSQFDSLAILNLAN-NSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTL  635 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  635 (956)
                      ..++.|+|++|.++|  .+|..++++++|++|+|++ |+++|.+|..|+++++|++|+|++|++.+..+..+..+..|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            368999999999998  5789999999999999987 8999999999999999999999999999999999999999999


Q ss_pred             EecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCc-CEEeccCCcCCCCcChhccccccCcccccCcc
Q 046848          636 MDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANV-QILDLSSNNISGIIPKCFNNFTAMTHEKGSNL  714 (956)
Q Consensus       636 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~  714 (956)
                      +++++|++.+.+|..+. .++.|+++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+.++..         
T Consensus       130 l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~---------  199 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL---------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC---------
T ss_pred             cccccccccccCchhhc-cCcccceeecccccccccccccccccccccccccccccccccccccccccccc---------
Confidence            99999999999999988 79999999999999999999999988886 89999999999998887765432         


Q ss_pred             cccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccccc
Q 046848          715 TLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQ  794 (956)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  794 (956)
                                                                 ..+++++|...+.+|..+..++.++.+++++|.+++.
T Consensus       200 -------------------------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~  236 (313)
T d1ogqa_         200 -------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             -------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             -------------------------------------------ccccccccccccccccccccccccccccccccccccc
Confidence                                                       4699999999999999999999999999999999976


Q ss_pred             CCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcCCccccccccCC-CCCCCCCCCCC
Q 046848          795 ITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCGLPLPNKC  871 (956)
Q Consensus       795 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~~~~c  871 (956)
                      +| .++.+++|+.|||++|+++|.+|+.++++++|++|||++|+|+|.||..+.+..+....+.|| .+||.|++ .|
T Consensus       237 ~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         237 LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            55 689999999999999999999999999999999999999999999999888889999999999 79999875 56

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=9.1e-26  Score=251.07  Aligned_cols=194  Identities=25%  Similarity=0.411  Sum_probs=142.4

Q ss_pred             CccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcC
Q 046848          576 PDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGL  655 (956)
Q Consensus       576 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l  655 (956)
                      ...+..+++++.+++++|.+++..|  +..+++|+.|++++|+++. + ..+..+++|+.|++++|++++ ++. +. .+
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~-~~~-~~-~~  262 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISN-LAP-LS-GL  262 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CGG-GT-TC
T ss_pred             ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCC-CCc-cc-cc
Confidence            3445667777777777777776544  3456777888888887774 2 356777888888888888773 333 33 57


Q ss_pred             ccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccccccccccccccc
Q 046848          656 VNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSY  735 (956)
Q Consensus       656 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  735 (956)
                      ++|++|++++|++.+..  .+..++.++.+++++|.+++.  ..+..++.                              
T Consensus       263 ~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~------------------------------  308 (384)
T d2omza2         263 TKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKN------------------------------  308 (384)
T ss_dssp             TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTT------------------------------
T ss_pred             ccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcc------------------------------
Confidence            78888888888887543  366778888888888888753  12333333                              


Q ss_pred             ccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCcc
Q 046848          736 FDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQF  815 (956)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  815 (956)
                                           ++.|++++|++++..  .+..+++|+.|+|++|++++ ++ .++++++|++|++++|++
T Consensus       309 ---------------------l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         309 ---------------------LTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQI  363 (384)
T ss_dssp             ---------------------CSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCC
T ss_pred             ---------------------cCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcC
Confidence                                 378889999888653  37888999999999999885 33 688899999999999999


Q ss_pred             CcCCcccccCCCCCCeEECcCC
Q 046848          816 FGSIPSSLSQLSRLSVMDLSYN  837 (956)
Q Consensus       816 ~~~ip~~l~~l~~L~~L~ls~N  837 (956)
                      ++.+|  +.++++|++|++++|
T Consensus       364 ~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         364 SDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CBCGG--GTTCTTCSEEECCCE
T ss_pred             CCChh--hccCCCCCEeeCCCC
Confidence            87665  788899999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1e-24  Score=242.54  Aligned_cols=186  Identities=27%  Similarity=0.412  Sum_probs=109.4

Q ss_pred             ceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecC
Q 046848          560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG  639 (956)
Q Consensus       560 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  639 (956)
                      +++.+++++|.+++..|  +...++|++|++++|.++..  ..+..+++|+.|++++|++++..+  +..+++|+.|+++
T Consensus       198 ~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~  271 (384)
T d2omza2         198 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG  271 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             ccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeecc
Confidence            34444444444443322  23344555555555555431  234555556666666665554332  5555666666666


Q ss_pred             CccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccc
Q 046848          640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISN  719 (956)
Q Consensus       640 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  719 (956)
                      +|+++ .++. +. .++.++.++++.|++.+.  ..+..+++++.|++++|++++..+  +..+++|             
T Consensus       272 ~~~l~-~~~~-~~-~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L-------------  331 (384)
T d2omza2         272 ANQIS-NISP-LA-GLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKL-------------  331 (384)
T ss_dssp             SSCCC-CCGG-GT-TCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTC-------------
T ss_pred             CcccC-CCCc-cc-cccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCCCC-------------
Confidence            66665 3333 22 466666666666666542  245666777777777777765432  4444333             


Q ss_pred             ccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccc
Q 046848          720 YYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI  799 (956)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l  799 (956)
                                                            +.|++++|++++ ++ .+.++++|++|+|++|++++.+|  +
T Consensus       332 --------------------------------------~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l  369 (384)
T d2omza2         332 --------------------------------------QRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--L  369 (384)
T ss_dssp             --------------------------------------CEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--G
T ss_pred             --------------------------------------CEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--h
Confidence                                                  677777777764 33 57778888888888888876443  7


Q ss_pred             cCCCCCCEEECCCC
Q 046848          800 GQLKSLDFLDLSRN  813 (956)
Q Consensus       800 ~~l~~L~~L~Ls~N  813 (956)
                      +++++|+.|+|++|
T Consensus       370 ~~l~~L~~L~L~~N  383 (384)
T d2omza2         370 ANLTRITQLGLNDQ  383 (384)
T ss_dssp             TTCTTCSEEECCCE
T ss_pred             ccCCCCCEeeCCCC
Confidence            78888888888877

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-24  Score=231.04  Aligned_cols=231  Identities=21%  Similarity=0.137  Sum_probs=203.3

Q ss_pred             eeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCC
Q 046848          561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGK  640 (956)
Q Consensus       561 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  640 (956)
                      -..++.++++++ .+|..+.  +++++|+|++|+|++..+.+|.++++|++|++++|++.+..+..+..+..++.++...
T Consensus        13 ~~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          13 KVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             SCEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CeEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            345677888887 6676554  5789999999999987778899999999999999999999999999999999998765


Q ss_pred             ccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccc
Q 046848          641 NGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNY  720 (956)
Q Consensus       641 N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~  720 (956)
                      +.....++...+.++++|++|++++|.+....+..+...++|+.+++++|++++..+..|..++.|              
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L--------------  155 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL--------------  155 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch--------------
Confidence            444336766656689999999999999987777788889999999999999998777777766655              


Q ss_pred             cccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcccc
Q 046848          721 YTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIG  800 (956)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  800 (956)
                                                           +.|++++|++++..+..|.++++|+.+++++|++++..|..|+
T Consensus       156 -------------------------------------~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~  198 (284)
T d1ozna_         156 -------------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR  198 (284)
T ss_dssp             -------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             -------------------------------------hhcccccCcccccchhhhccccccchhhhhhccccccChhHhh
Confidence                                                 8899999999988889999999999999999999999999999


Q ss_pred             CCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848          801 QLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS  845 (956)
Q Consensus       801 ~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  845 (956)
                      .+++|++||+++|++++..|..|+.+.+|++|++++|++.|.++.
T Consensus       199 ~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             hhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            999999999999999999999999999999999999999998764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.2e-24  Score=228.36  Aligned_cols=235  Identities=24%  Similarity=0.277  Sum_probs=200.5

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEcc-CceeeeeCCccccCCCCCcEEe
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLY-NNRLTGELPSFFTNGSQLTLMD  637 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~~~~l~~L~~L~  637 (956)
                      +.+++|+|++|+|++..+..|.++++|++|++++|++.+..+..+..++.++.++.. .|.++...|..|+++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            568899999999987777789999999999999999998888888889999998765 6677777788899999999999


Q ss_pred             cCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccc
Q 046848          638 LGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI  717 (956)
Q Consensus       638 Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  717 (956)
                      +++|.+. .++...+....+|+.+++++|++++..+..+..+++|+.|++++|++++..+..|.++++|           
T Consensus       112 l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L-----------  179 (284)
T d1ozna_         112 LDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL-----------  179 (284)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----------
T ss_pred             cCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccccc-----------
Confidence            9999997 5555555468899999999999997777888899999999999999998888888777666           


Q ss_pred             ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc
Q 046848          718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP  797 (956)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  797 (956)
                                                              +.+++++|++++..|..|..+++|++||+++|++++..|.
T Consensus       180 ----------------------------------------~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~  219 (284)
T d1ozna_         180 ----------------------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE  219 (284)
T ss_dssp             ----------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             ----------------------------------------chhhhhhccccccChhHhhhhhhccccccccccccccccc
Confidence                                                    8899999999999999999999999999999999988888


Q ss_pred             cccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCC
Q 046848          798 KIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSG  846 (956)
Q Consensus       798 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  846 (956)
                      .|+.+++|++|+|++|++.+.-+.. .-...++.+....+.+.|..|..
T Consensus       220 ~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~  267 (284)
T d1ozna_         220 ALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (284)
T ss_dssp             HHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             ccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCchH
Confidence            9999999999999999998754321 11223566777888899888763

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=8.4e-23  Score=218.77  Aligned_cols=268  Identities=22%  Similarity=0.292  Sum_probs=173.5

Q ss_pred             eeecccceeeecCCCCCCCCceeeCCCCcCccccch-hhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcc
Q 046848          517 GIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISF-LCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSF  595 (956)
Q Consensus       517 ~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  595 (956)
                      .++.+++.++...+..+.++++|++++|+++...+. +...  ++|++|++++|.+....|..|.+++.|+.|++++|++
T Consensus        14 ~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l--~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l   91 (305)
T d1xkua_          14 VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNL--KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL   91 (305)
T ss_dssp             EEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhcc--ccccccccccccccccchhhhhCCCccCEecccCCcc
Confidence            445555555533233345666677777766655442 2222  5677777777777766666677777777777777776


Q ss_pred             cccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCcccc--ccCChhHhhcCccCcEEEccCCcccccCC
Q 046848          596 FGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLS--GEIPTWIGEGLVNLVVLSLKSNKFNGSIP  673 (956)
Q Consensus       596 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~ip~~~~~~l~~L~~L~L~~N~l~~~~p  673 (956)
                      +. +|..+  ...++.|++.+|.+.+..+..+.....++.++...|...  +..+..+ ..+++|+++++++|.+. .+|
T Consensus        92 ~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~-~~l~~L~~l~l~~n~l~-~l~  166 (305)
T d1xkua_          92 KE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNIT-TIP  166 (305)
T ss_dssp             SB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEECCSSCCC-SCC
T ss_pred             Cc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccc-ccccccCccccccCCcc-ccC
Confidence            63 44332  345667777777776655556666666666776666543  1222222 35666777777777665 344


Q ss_pred             ccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceeccc
Q 046848          674 LQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQST  753 (956)
Q Consensus       674 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  753 (956)
                      ..+  .++|+.|++++|.+++..+..|..++.+                                               
T Consensus       167 ~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l-----------------------------------------------  197 (305)
T d1xkua_         167 QGL--PPSLTELHLDGNKITKVDAASLKGLNNL-----------------------------------------------  197 (305)
T ss_dssp             SSC--CTTCSEEECTTSCCCEECTGGGTTCTTC-----------------------------------------------
T ss_pred             ccc--CCccCEEECCCCcCCCCChhHhhccccc-----------------------------------------------
Confidence            332  4567777777777666666555554444                                               


Q ss_pred             ccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccc------cCCC
Q 046848          754 LGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSL------SQLS  827 (956)
Q Consensus       754 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l------~~l~  827 (956)
                          +.|++++|.+++..+..+.++++|++|+|++|+|+ .+|+++..+++|++|+|++|+|+......|      ..+.
T Consensus       198 ----~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~  272 (305)
T d1xkua_         198 ----AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA  272 (305)
T ss_dssp             ----CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred             ----cccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccC
Confidence                77888888888877888888888888888888887 578888888888888888888885433333      3567


Q ss_pred             CCCeEECcCCcce-ecCCC
Q 046848          828 RLSVMDLSYNNLS-GKIPS  845 (956)
Q Consensus       828 ~L~~L~ls~N~l~-g~ip~  845 (956)
                      +|+.|++++|++. +++|.
T Consensus       273 ~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         273 SYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             CCSEEECCSSSSCGGGSCG
T ss_pred             CCCEEECCCCcCccCcCCH
Confidence            7888888888885 45543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-23  Score=218.68  Aligned_cols=205  Identities=23%  Similarity=0.256  Sum_probs=167.8

Q ss_pred             cCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCc
Q 046848          580 SQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLV  659 (956)
Q Consensus       580 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~  659 (956)
                      .+...+.+.+.++++++ .+|..+.  +++++|+|++|+|++..+..|.++++|++|+|++|+++ .+|.. . .+++|+
T Consensus         7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~-~-~l~~L~   80 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-G-TLPVLG   80 (266)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-S-CCTTCC
T ss_pred             cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc-c-cccccc
Confidence            34455666777777777 4565553  56788888888888766677888888888888888887 66653 2 588888


Q ss_pred             EEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccce
Q 046848          660 VLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKA  739 (956)
Q Consensus       660 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  739 (956)
                      +|+|++|++++ ++..+..+++|+.|++++|.+.+..+..+..+..+                                 
T Consensus        81 ~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l---------------------------------  126 (266)
T d1p9ag_          81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL---------------------------------  126 (266)
T ss_dssp             EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC---------------------------------
T ss_pred             ccccccccccc-cccccccccccccccccccccceeecccccccccc---------------------------------
Confidence            88888888874 56678888999999999999887666666555444                                 


Q ss_pred             eEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCC
Q 046848          740 VLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSI  819 (956)
Q Consensus       740 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i  819 (956)
                                        +.|++++|.++...+..+..++.|+.|++++|++++..+..|+.+++|++|||++|+|+ .+
T Consensus       127 ------------------~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         127 ------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             ------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             ------------------ccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence                              78999999999888888889999999999999999888888999999999999999999 78


Q ss_pred             cccccCCCCCCeEECcCCcceecC
Q 046848          820 PSSLSQLSRLSVMDLSYNNLSGKI  843 (956)
Q Consensus       820 p~~l~~l~~L~~L~ls~N~l~g~i  843 (956)
                      |+++..+++|+.|++++|+|.|.+
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             ChhHCCCCCCCEEEecCCCCCCCc
Confidence            999999999999999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=3.9e-22  Score=213.49  Aligned_cols=114  Identities=23%  Similarity=0.191  Sum_probs=57.2

Q ss_pred             ceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecC
Q 046848          560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG  639 (956)
Q Consensus       560 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  639 (956)
                      +|+.|++++|..++..+..+.+++.++.|++++|.+.+..+..+.++++|++|+|++|+|+ .+|.+|..+++|++|+|+
T Consensus       172 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred             ccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECC
Confidence            4444455555444444444555555555555555555444445555555555555555554 334445555555555555


Q ss_pred             CccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCC
Q 046848          640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS  693 (956)
Q Consensus       640 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  693 (956)
                      +|+|+ .++...+.                  .+.....+++|+.|+|++|++.
T Consensus       251 ~N~i~-~i~~~~f~------------------~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         251 NNNIS-AIGSNDFC------------------PPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SSCCC-CCCTTSSS------------------CSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCccC-ccChhhcc------------------CcchhcccCCCCEEECCCCcCc
Confidence            55544 34332221                  1122334566777777777664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1e-21  Score=205.09  Aligned_cols=200  Identities=23%  Similarity=0.208  Sum_probs=174.8

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ..+.+++.++++++ .+|..+.  +++++|+|++|+|++..+..|.++++|++|+|++|+|+. +| .++.+++|++|+|
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            45667799999998 5676554  579999999999998777889999999999999999984 44 3578999999999


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS  718 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  718 (956)
                      ++|+++ .++..+. ++++|++|++++|.+.+..+..+..+.+++.|++++|.+++..+..+..++.+            
T Consensus        85 s~N~l~-~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l------------  150 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL------------  150 (266)
T ss_dssp             CSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC------------
T ss_pred             cccccc-ccccccc-cccccccccccccccceeeccccccccccccccccccccceeccccccccccc------------
Confidence            999998 5666655 79999999999999998888888999999999999999997777666665555            


Q ss_pred             cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848          719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK  798 (956)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  798 (956)
                                                             +.+++++|++++..+..|..+++|+.|||++|+|+ .+|++
T Consensus       151 ---------------------------------------~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~  190 (266)
T d1p9ag_         151 ---------------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG  190 (266)
T ss_dssp             ---------------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred             ---------------------------------------hhcccccccccccCccccccccccceeecccCCCc-ccChh
Confidence                                                   88999999999888889999999999999999999 89999


Q ss_pred             ccCCCCCCEEECCCCccCc
Q 046848          799 IGQLKSLDFLDLSRNQFFG  817 (956)
Q Consensus       799 l~~l~~L~~L~Ls~N~l~~  817 (956)
                      +..+++|+.|+|++|++..
T Consensus       191 ~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         191 FFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTCCCSEEECCSCCBCC
T ss_pred             HCCCCCCCEEEecCCCCCC
Confidence            9999999999999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=5.5e-16  Score=168.75  Aligned_cols=178  Identities=28%  Similarity=0.357  Sum_probs=114.7

Q ss_pred             ccceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCC
Q 046848          267 LVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLA  346 (956)
Q Consensus       267 L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~  346 (956)
                      + +.|||+++.++. +|+.   .++|++|++++|+++.+|..+   .+|+.|++++|.++.. +    .++     +.|+
T Consensus        40 l-~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l-~----~lp-----~~L~  101 (353)
T d1jl5a_          40 A-HELELNNLGLSS-LPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKAL-S----DLP-----PLLE  101 (353)
T ss_dssp             C-SEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCC-C----SCC-----TTCC
T ss_pred             C-CEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchh-h----hhc-----cccc
Confidence            5 788888888774 5643   467889999999998888653   5788888888887642 2    222     2788


Q ss_pred             EEEccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCc
Q 046848          347 WLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNS  426 (956)
Q Consensus       347 ~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  426 (956)
                      +|++++|.+.. +|.++.+++|++|+++++.+.....    ....+..+.+..+......   .+..++.++.+++++|.
T Consensus       102 ~L~L~~n~l~~-lp~~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~~~---~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         102 YLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELP---ELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             EEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSC
T ss_pred             ccccccccccc-ccchhhhccceeecccccccccccc----ccccccchhhccccccccc---cccccccceeccccccc
Confidence            88998888874 4567788888889888888764322    3456777777776654432   25667788888888877


Q ss_pred             ccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCC
Q 046848          427 LTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGIS  476 (956)
Q Consensus       427 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~  476 (956)
                      .......    ....+.+....+.+. .++ .+..++.|+.+++++|...
T Consensus       174 ~~~~~~~----~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~  217 (353)
T d1jl5a_         174 LKKLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK  217 (353)
T ss_dssp             CSSCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred             ccccccc----ccccccccccccccc-ccc-ccccccccccccccccccc
Confidence            6532211    122334444444332 122 2344556666666666544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=3.4e-16  Score=170.45  Aligned_cols=138  Identities=22%  Similarity=0.255  Sum_probs=92.6

Q ss_pred             CCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCCCCC
Q 046848          290 PSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLK  369 (956)
Q Consensus       290 ~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~  369 (956)
                      .++++|+|+++.++.+|+.   .++|++|++++|+++ .+|..   ..      +|+.|++++|.++.. +.+  .+.|+
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~------~L~~L~l~~n~l~~l-~~l--p~~L~  101 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLT-ELPEL---PQ------SLKSLLVDNNNLKAL-SDL--PPLLE  101 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCS-SCCCC---CT------TCCEEECCSSCCSCC-CSC--CTTCC
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCc-ccccc---hh------hhhhhhhhhcccchh-hhh--ccccc
Confidence            3689999999999999864   468999999999998 44542   22      889999999887743 222  24588


Q ss_pred             EEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCC
Q 046848          370 RLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSC  449 (956)
Q Consensus       370 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n  449 (956)
                      +|++++|.+.. +|. ++.+++|+.|+++++.+.....     ....+..+.+..+....  ...+..+..++.+.+++|
T Consensus       102 ~L~L~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~~-----~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         102 YLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKLPD-----LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNN  172 (353)
T ss_dssp             EEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSS
T ss_pred             ccccccccccc-ccc-hhhhccceeecccccccccccc-----ccccccchhhccccccc--cccccccccceecccccc
Confidence            88888888874 443 5678888888888887765432     24556666666554432  222334445555555555


Q ss_pred             CCC
Q 046848          450 KIG  452 (956)
Q Consensus       450 ~l~  452 (956)
                      ...
T Consensus       173 ~~~  175 (353)
T d1jl5a_         173 SLK  175 (353)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.2e-19  Score=206.15  Aligned_cols=38  Identities=29%  Similarity=0.496  Sum_probs=21.0

Q ss_pred             CCCEEEeeccccccc----cchhhcCCCCCCEEECcCccCcc
Q 046848          367 SLKRLSIANNRLNGT----INKSVGQLVKLESLFLHNNSLRG  404 (956)
Q Consensus       367 ~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~  404 (956)
                      +|++|++++|.+++.    ++..+..+++|++|++++|.+..
T Consensus        85 ~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          85 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            455555555555432    23344556666666666666553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.3e-17  Score=169.27  Aligned_cols=205  Identities=24%  Similarity=0.370  Sum_probs=148.7

Q ss_pred             eEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCc
Q 046848          562 DYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKN  641 (956)
Q Consensus       562 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  641 (956)
                      ..++++.+++++.+  .+..+.+|+.|++.+|.++. ++ .+..+++|++|++++|++++..|  +..+++|+.+++++|
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence            34456666666543  34566778888888888774 33 57778888888888888875443  777888888888888


Q ss_pred             cccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccc
Q 046848          642 GLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYY  721 (956)
Q Consensus       642 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~  721 (956)
                      .++ .++. +. .+++|+.+++++|...+..  .+...+.++.+.++++.+....+  +...+                 
T Consensus        96 ~~~-~i~~-l~-~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-----------------  151 (227)
T d1h6ua2          96 PLK-NVSA-IA-GLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLT-----------------  151 (227)
T ss_dssp             CCS-CCGG-GT-TCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCT-----------------
T ss_pred             ccc-cccc-cc-ccccccccccccccccccc--hhccccchhhhhchhhhhchhhh--hcccc-----------------
Confidence            877 5653 44 5788888888888776433  35667788888888887764322  23322                 


Q ss_pred             ccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccC
Q 046848          722 TSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQ  801 (956)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  801 (956)
                                                        .|+.|++++|.+++..  .++++++|+.|||++|++++ ++ .+++
T Consensus       152 ----------------------------------~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~  193 (227)
T d1h6ua2         152 ----------------------------------NLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLAS  193 (227)
T ss_dssp             ----------------------------------TCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGG
T ss_pred             ----------------------------------ccccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcC
Confidence                                              3378888888887443  37888999999999999985 43 4888


Q ss_pred             CCCCCEEECCCCccCcCCcccccCCCCCCeEECcC
Q 046848          802 LKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSY  836 (956)
Q Consensus       802 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  836 (956)
                      +++|++|+|++|++++..  .++++++|++|++++
T Consensus       194 l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         194 LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             CCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            999999999999998643  378899999999874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4e-19  Score=201.68  Aligned_cols=141  Identities=20%  Similarity=0.100  Sum_probs=84.1

Q ss_pred             CceeEEECCCCCCCCCCCcc----c-cCCCCCCEEEcCCCcccccCC----CCcCCCCCcCEEEccCceeeee----CCc
Q 046848          559 HKLDYIDLSNNLLSGRLPDC----W-SQFDSLAILNLANNSFFGKIP----DSIGFLKNLQSLSLYNNRLTGE----LPS  625 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~----~-~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~----~p~  625 (956)
                      +.++.+++++|.+++.....    + .....|+.+++++|.++....    ..+...++|++|+|++|+++..    ++.
T Consensus       283 ~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~  362 (460)
T d1z7xw1         283 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ  362 (460)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhh
Confidence            45666666666664321111    1 123467777777777654322    2234456778888888877632    233


Q ss_pred             ccc-CCCCCcEEecCCcccccc----CChhHhhcCccCcEEEccCCcccccCCc----ccc-CCCCcCEEeccCCcCCCC
Q 046848          626 FFT-NGSQLTLMDLGKNGLSGE----IPTWIGEGLVNLVVLSLKSNKFNGSIPL----QLC-HLANVQILDLSSNNISGI  695 (956)
Q Consensus       626 ~~~-~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~L~~N~l~~~~p~----~l~-~l~~L~~L~Ls~N~l~~~  695 (956)
                      .+. ..+.|++|+|++|++++.    ++..+. .+++|++|+|++|+++.....    .+. +...|+.|++.+|.+...
T Consensus       363 ~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLL-ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             hhhcccCCCCEEECCCCCCChHHHHHHHHHHh-cCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence            332 456688888888887632    333343 467888888888887653222    222 334789999999988765


Q ss_pred             cChhc
Q 046848          696 IPKCF  700 (956)
Q Consensus       696 ~p~~~  700 (956)
                      ....+
T Consensus       442 ~~~~l  446 (460)
T d1z7xw1         442 MEDRL  446 (460)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=3.5e-18  Score=168.23  Aligned_cols=13  Identities=15%  Similarity=0.278  Sum_probs=5.8

Q ss_pred             CeEECcCCcceec
Q 046848          830 SVMDLSYNNLSGK  842 (956)
Q Consensus       830 ~~L~ls~N~l~g~  842 (956)
                      +.+|++.|.|.|.
T Consensus       173 ~l~~L~~n~l~C~  185 (192)
T d1w8aa_         173 QIKDLPHSEFKCS  185 (192)
T ss_dssp             BGGGSCTTTCCCC
T ss_pred             EeeecCHhhCcCC
Confidence            3444444444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=7.6e-17  Score=163.42  Aligned_cols=203  Identities=19%  Similarity=0.345  Sum_probs=160.7

Q ss_pred             eeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCce
Q 046848          539 LNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR  618 (956)
Q Consensus       539 L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  618 (956)
                      ++++.+++++.+.. ...  .+|+.|++++|.++. ++ .+..+++|++|++++|++++..|  +..+++|+++++++|.
T Consensus        24 ~~l~~~~~~d~~~~-~~l--~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          24 IAAGKSNVTDTVTQ-ADL--DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHTTCSSTTSEECH-HHH--HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCCcCCH-HHc--CCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccc
Confidence            44555555554422 222  689999999999985 44 58999999999999999986544  8899999999999999


Q ss_pred             eeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcCh
Q 046848          619 LTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPK  698 (956)
Q Consensus       619 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  698 (956)
                      ++. ++ .+.++++|+.+++++|...+ ++. +. ..+.++.+.++++.+....  .+...++|+.|++++|.+++..+ 
T Consensus        97 ~~~-i~-~l~~l~~L~~l~l~~~~~~~-~~~-~~-~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~-  168 (227)
T d1h6ua2          97 LKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LA-GLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP-  168 (227)
T ss_dssp             CSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG-
T ss_pred             ccc-cc-cccccccccccccccccccc-cch-hc-cccchhhhhchhhhhchhh--hhccccccccccccccccccchh-
Confidence            883 43 58899999999999999874 333 22 5789999999999987543  46788999999999999875432 


Q ss_pred             hccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhcc
Q 046848          699 CFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDL  778 (956)
Q Consensus       699 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  778 (956)
                       ++++++|                                                   +.|||++|++++. + .+.++
T Consensus       169 -l~~l~~L---------------------------------------------------~~L~Ls~n~l~~l-~-~l~~l  194 (227)
T d1h6ua2         169 -LANLSKL---------------------------------------------------TTLKADDNKISDI-S-PLASL  194 (227)
T ss_dssp             -GTTCTTC---------------------------------------------------CEEECCSSCCCCC-G-GGGGC
T ss_pred             -hcccccc---------------------------------------------------eecccCCCccCCC-h-hhcCC
Confidence             4444444                                                   8999999999864 4 38899


Q ss_pred             ccCCEEEcccccccccCCccccCCCCCCEEECCC
Q 046848          779 AGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSR  812 (956)
Q Consensus       779 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~  812 (956)
                      ++|++|+|++|++++ ++ .++++++|+.|++++
T Consensus       195 ~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         195 PNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             CCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            999999999999995 44 389999999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.8e-17  Score=168.70  Aligned_cols=220  Identities=16%  Similarity=0.103  Sum_probs=133.6

Q ss_pred             eEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeC-CccccCCCCCcEEecCC
Q 046848          562 DYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGEL-PSFFTNGSQLTLMDLGK  640 (956)
Q Consensus       562 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~  640 (956)
                      +.++.++..++ .+|..+.  +++++|++++|+++...+..|.++++|++|++++|.+...+ +.+|.+++.++.+++..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            45566666666 4554432  35677777777776555556677777777777777665433 34566667777766543


Q ss_pred             -ccccccCChhHhhcCccCcEEEccCCcccccCCc-cccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848          641 -NGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPL-QLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS  718 (956)
Q Consensus       641 -N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  718 (956)
                       |++. .++...+.++++|+++++++|++....+. .+..++.+..+..+++.+....+..|..++              
T Consensus        88 ~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~--------------  152 (242)
T d1xwdc1          88 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------  152 (242)
T ss_dssp             CTTCC-EECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB--------------
T ss_pred             ccccc-ccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc--------------
Confidence             4454 33433333566777777777766532221 233344455555555555543333333322              


Q ss_pred             cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEE-EcccccccccCCc
Q 046848          719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIAL-NLSRNTLTGQITP  797 (956)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L-~Ls~N~l~~~ip~  797 (956)
                                                          ..++.|++++|+++...+ .....++++.+ ++++|+++...+.
T Consensus       153 ------------------------------------~~l~~L~l~~n~l~~i~~-~~~~~~~l~~~~~l~~n~l~~l~~~  195 (242)
T d1xwdc1         153 ------------------------------------FESVILWLNKNGIQEIHN-CAFNGTQLDELNLSDNNNLEELPND  195 (242)
T ss_dssp             ------------------------------------SSCEEEECCSSCCCEECT-TTTTTCCEEEEECTTCTTCCCCCTT
T ss_pred             ------------------------------------ccceeeeccccccccccc-ccccchhhhccccccccccccccHH
Confidence                                                123778888888885444 33444555444 5778888854445


Q ss_pred             cccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcC
Q 046848          798 KIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSY  836 (956)
Q Consensus       798 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  836 (956)
                      .|.++++|++|||++|+++...+..|.+++.|+++++.+
T Consensus       196 ~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             HhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            678889999999999999866666777777777766644

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.9e-17  Score=168.65  Aligned_cols=202  Identities=18%  Similarity=0.192  Sum_probs=156.5

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccC-CCCcCCCCCcCEEEccC-ceeeeeCCccccCCCCCcEE
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKI-PDSIGFLKNLQSLSLYN-NRLTGELPSFFTNGSQLTLM  636 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L  636 (956)
                      +++++|++++|+++...+..|.++++|++|++++|.+...+ +..|.+++.++++++.. |++....+..|.++++|+.+
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            57889999999998666668999999999999999987654 45788999999998864 67888888999999999999


Q ss_pred             ecCCccccccCCh-hHhhcCccCcEEEccCCcccccCCccccCCC-CcCEEeccCCcCCCCcChhccccccCcccccCcc
Q 046848          637 DLGKNGLSGEIPT-WIGEGLVNLVVLSLKSNKFNGSIPLQLCHLA-NVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNL  714 (956)
Q Consensus       637 ~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~  714 (956)
                      ++++|++. .++. .....+..+..+...++.+....+..+..++ .++.|++++|+++...+..+.. ..+        
T Consensus       109 ~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~-~~l--------  178 (242)
T d1xwdc1         109 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNG-TQL--------  178 (242)
T ss_dssp             EEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTT-CCE--------
T ss_pred             ccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc-hhh--------
Confidence            99999997 4443 2233456677777788888866666777664 7899999999998554443322 221        


Q ss_pred             cccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccccc
Q 046848          715 TLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQ  794 (956)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  794 (956)
                                                                .+.+++++|+++...+..|.++++|++|+|++|+|+..
T Consensus       179 ------------------------------------------~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l  216 (242)
T d1xwdc1         179 ------------------------------------------DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL  216 (242)
T ss_dssp             ------------------------------------------EEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCC
T ss_pred             ------------------------------------------hccccccccccccccHHHhcCCCCCCEEECCCCcCCcc
Confidence                                                      14567888999965566789999999999999999955


Q ss_pred             CCccccCCCCCCEEECCC
Q 046848          795 ITPKIGQLKSLDFLDLSR  812 (956)
Q Consensus       795 ip~~l~~l~~L~~L~Ls~  812 (956)
                      .+..|.+++.|+.+++.+
T Consensus       217 ~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         217 PSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CSSSCTTCCEEESSSEES
T ss_pred             CHHHHcCCcccccCcCCC
Confidence            555677777777766543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.1e-16  Score=159.63  Aligned_cols=72  Identities=29%  Similarity=0.389  Sum_probs=40.8

Q ss_pred             eEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECc
Q 046848          758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLS  835 (956)
Q Consensus       758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls  835 (956)
                      +.+++++|.+++  +..+..+++|+.+++++|++++ ++ .++++++|+.|+|++|+++. +| .+.++++|++|+++
T Consensus       137 ~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         137 ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             cccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            445555555542  2234455666666666666654 22 25666666666666666653 33 46666666666665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.5e-16  Score=158.63  Aligned_cols=182  Identities=25%  Similarity=0.366  Sum_probs=147.6

Q ss_pred             EEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCcc
Q 046848          563 YIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNG  642 (956)
Q Consensus       563 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  642 (956)
                      ...+..+.+++.++.  ..+.+|+.|++++|.++.. + .+..+++|++|++++|++++..  .++.+++|++|++++|+
T Consensus        28 ~~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          28 KDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK  101 (210)
T ss_dssp             HHHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             HHHhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccc
Confidence            346777777766553  3567899999999999854 3 4788999999999999999644  36889999999999999


Q ss_pred             ccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccc
Q 046848          643 LSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYT  722 (956)
Q Consensus       643 l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~  722 (956)
                      ++ .+|. +. ++++|+.|++++|.+.. + ..+.++++++.+++++|.+++.  ..+..++.                 
T Consensus       102 i~-~l~~-l~-~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~-----------------  157 (210)
T d1h6ta2         102 VK-DLSS-LK-DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTK-----------------  157 (210)
T ss_dssp             CC-CGGG-GT-TCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTT-----------------
T ss_pred             cc-cccc-cc-ccccccccccccccccc-c-cccccccccccccccccccccc--cccccccc-----------------
Confidence            98 6774 44 69999999999999863 3 3688899999999999998743  23333333                 


Q ss_pred             cccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCC
Q 046848          723 SLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQL  802 (956)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  802 (956)
                                                        |+.+++++|++++. + .+.++++|+.|+|++|++++ +| .+.++
T Consensus       158 ----------------------------------L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l  199 (210)
T d1h6ta2         158 ----------------------------------LDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGL  199 (210)
T ss_dssp             ----------------------------------CSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTC
T ss_pred             ----------------------------------cccccccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCC
Confidence                                              48999999999964 3 38899999999999999984 55 69999


Q ss_pred             CCCCEEECCC
Q 046848          803 KSLDFLDLSR  812 (956)
Q Consensus       803 ~~L~~L~Ls~  812 (956)
                      ++|++|+|++
T Consensus       200 ~~L~~L~Ls~  209 (210)
T d1h6ta2         200 KNLDVLELFS  209 (210)
T ss_dssp             TTCSEEEEEE
T ss_pred             CCCCEEEccC
Confidence            9999999974

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=2.5e-16  Score=154.71  Aligned_cols=173  Identities=21%  Similarity=0.211  Sum_probs=118.7

Q ss_pred             eeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCccc
Q 046848          517 GIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFF  596 (956)
Q Consensus       517 ~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  596 (956)
                      .++.++++++...+..+.+++.|+|++|++++.++.......++|+.|++++|.+.+..+..+..+++|++|++++|++.
T Consensus        12 ~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~   91 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK   91 (192)
T ss_dssp             EEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC
T ss_pred             EEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccc
Confidence            45555555553323345677778888887776554333222367888888888888777778888888888888888888


Q ss_pred             ccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccc
Q 046848          597 GKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQL  676 (956)
Q Consensus       597 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l  676 (956)
                      +..|.+|.++++|++|+|++|+|++..|.+|..+++|++|+|++|.+....+...+  ...++.+.+..+.++...|.. 
T Consensus        92 ~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~c~~p~~-  168 (192)
T d1w8aa_          92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCGAPSK-  168 (192)
T ss_dssp             EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCBBCSSTT-
T ss_pred             ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeEeCCChh-
Confidence            77777788888888888888888877777888888888888888887644333222  234555666667776655544 


Q ss_pred             cCCCCcCEEeccCCcCCC
Q 046848          677 CHLANVQILDLSSNNISG  694 (956)
Q Consensus       677 ~~l~~L~~L~Ls~N~l~~  694 (956)
                        +..++.++|+.|.+.-
T Consensus       169 --l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         169 --VRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             --TTTSBGGGSCTTTCCC
T ss_pred             --hcCCEeeecCHhhCcC
Confidence              3456667777777753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=6.8e-16  Score=152.51  Aligned_cols=119  Identities=28%  Similarity=0.398  Sum_probs=65.7

Q ss_pred             EECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccc
Q 046848          564 IDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGL  643 (956)
Q Consensus       564 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  643 (956)
                      ..++.+.+++.++  ...+.+++.|++++|.++. + +.++.+++|++|++++|++++..|  ++++++|+.|++++|.+
T Consensus        23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccc
Confidence            3455565554433  2345667777777776663 2 235666667777777766664332  56666666666666666


Q ss_pred             cccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCC
Q 046848          644 SGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS  693 (956)
Q Consensus       644 ~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  693 (956)
                      . .++. +. ++++|+.|++++|.+...  ..+..+++|+.|++++|++.
T Consensus        97 ~-~~~~-l~-~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~  141 (199)
T d2omxa2          97 A-DITP-LA-NLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS  141 (199)
T ss_dssp             C-CCGG-GT-TCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC
T ss_pred             c-cccc-cc-cccccccccccccccccc--cccchhhhhHHhhhhhhhhc
Confidence            5 4442 22 455555555555555432  12445555555555555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=1.1e-15  Score=150.94  Aligned_cols=179  Identities=25%  Similarity=0.362  Sum_probs=135.3

Q ss_pred             CEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccC
Q 046848          586 AILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKS  665 (956)
Q Consensus       586 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~  665 (956)
                      ....++.+.+++.++  ...++++++|++++|.++. + +.++.+++|++|++++|+++ .++. +. ++++|++|++++
T Consensus        21 i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~-~~~~-l~-~l~~L~~L~l~~   93 (199)
T d2omxa2          21 MKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNN   93 (199)
T ss_dssp             HHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCS
T ss_pred             HHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCcccccccc-Cccc-cc-CCcccccccccc
Confidence            345567777776543  3457889999999999884 3 35788899999999999998 4554 44 689999999999


Q ss_pred             CcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecC
Q 046848          666 NKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKG  745 (956)
Q Consensus       666 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  745 (956)
                      |.+.. ++ .+.++++|+.|++++|.+....  .+..++.                                        
T Consensus        94 n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~----------------------------------------  129 (199)
T d2omxa2          94 NQIAD-IT-PLANLTNLTGLTLFNNQITDID--PLKNLTN----------------------------------------  129 (199)
T ss_dssp             SCCCC-CG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTT----------------------------------------
T ss_pred             ccccc-cc-cccccccccccccccccccccc--ccchhhh----------------------------------------
Confidence            98874 33 4788899999999988886432  2333333                                        


Q ss_pred             ccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccC
Q 046848          746 SQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQ  825 (956)
Q Consensus       746 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  825 (956)
                                 |+.|++++|++.. ++ .+..+++|+.|++++|++++ + +.++++++|++|++++|+++. +| .+++
T Consensus       130 -----------L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~-l-~~l~~l~~L~~L~ls~N~i~~-i~-~l~~  192 (199)
T d2omxa2         130 -----------LNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTD-L-KPLANLTTLERLDISSNKVSD-IS-VLAK  192 (199)
T ss_dssp             -----------CSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGG
T ss_pred             -----------hHHhhhhhhhhcc-cc-cccccccccccccccccccC-C-ccccCCCCCCEEECCCCCCCC-Cc-cccC
Confidence                       4889999998873 33 57888999999999999885 3 348889999999999999885 43 5778


Q ss_pred             CCCCCeE
Q 046848          826 LSRLSVM  832 (956)
Q Consensus       826 l~~L~~L  832 (956)
                      +++|+.|
T Consensus       193 L~~L~~L  199 (199)
T d2omxa2         193 LTNLESL  199 (199)
T ss_dssp             CTTCSEE
T ss_pred             CCCCCcC
Confidence            8888775

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.3e-15  Score=155.47  Aligned_cols=202  Identities=18%  Similarity=0.181  Sum_probs=116.9

Q ss_pred             ceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCccccc-CCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGK-IPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       560 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ....+.++.......... .....+|++|++++|.++.. ++..+..+++|++|++++|.+++..+..++.+++|+.|++
T Consensus        24 ~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  102 (284)
T d2astb2          24 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  102 (284)
T ss_dssp             TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             cceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccc
Confidence            344556655554433322 22345677777777776533 3344566777777777777777666667777777777777


Q ss_pred             CCc-cccccCChhHhhcCccCcEEEccCCc-cccc-CCcccc-CCCCcCEEeccCCc--CCCC-cChhccccccCccccc
Q 046848          639 GKN-GLSGEIPTWIGEGLVNLVVLSLKSNK-FNGS-IPLQLC-HLANVQILDLSSNN--ISGI-IPKCFNNFTAMTHEKG  711 (956)
Q Consensus       639 s~N-~l~~~ip~~~~~~l~~L~~L~L~~N~-l~~~-~p~~l~-~l~~L~~L~Ls~N~--l~~~-~p~~~~~l~~L~~~~~  711 (956)
                      ++| .+++.--..+.+++++|++|++++|. ++.. +...+. ..++|+.|+++++.  ++.. +...+           
T Consensus       103 s~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~-----------  171 (284)
T d2astb2         103 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV-----------  171 (284)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH-----------
T ss_pred             cccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccc-----------
Confidence            775 34422222233457777777777753 3321 111222 23567777776542  2211 00011           


Q ss_pred             CcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCC-CCCCCCchhhhccccCCEEEccc-c
Q 046848          712 SNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSN-KLGGEVPEEIMDLAGLIALNLSR-N  789 (956)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~-N  789 (956)
                                                              ..++.|++||+++| .+++..+..+.++++|++|+|++ +
T Consensus       172 ----------------------------------------~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~  211 (284)
T d2astb2         172 ----------------------------------------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  211 (284)
T ss_dssp             ----------------------------------------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             ----------------------------------------cccccccccccccccCCCchhhhhhcccCcCCEEECCCCC
Confidence                                                    12234467777764 46666666677777777777777 3


Q ss_pred             cccccCCccccCCCCCCEEECCCC
Q 046848          790 TLTGQITPKIGQLKSLDFLDLSRN  813 (956)
Q Consensus       790 ~l~~~ip~~l~~l~~L~~L~Ls~N  813 (956)
                      .+++.....++++++|+.|+++++
T Consensus       212 ~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         212 DIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCChHHHHHHhcCCCCCEEeeeCC
Confidence            566666666777777777777766

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.1e-14  Score=150.17  Aligned_cols=249  Identities=15%  Similarity=0.167  Sum_probs=165.0

Q ss_pred             cEEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCcc--ccccccCCCCCCEEEc
Q 046848          243 EVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE--IPKSLGNMCNLKSLTL  320 (956)
Q Consensus       243 ~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--ip~~l~~l~~L~~L~L  320 (956)
                      +.+|++++.+.......+....  . ..+.++...+...... .....+|++|+++++.++.  ++..+..+++|++|++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~~~--~-~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L   78 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLSQG--V-IAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL   78 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHHTT--C-SEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             CEEECCCCCCCchHHHHHHhcc--c-eEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccc
Confidence            3567777666543333332221  2 4555555554433322 3345689999999988876  5666788999999999


Q ss_pred             cCCCCCCcchHHHhhcCCCCccCCCCEEEccCC-cCccc-CCC-CCCCCCCCEEEeecc-ccccc-cchhhc-CCCCCCE
Q 046848          321 SYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSN-EITGS-LPN-FGGFSSLKRLSIANN-RLNGT-INKSVG-QLVKLES  394 (956)
Q Consensus       321 s~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n-~l~~~-~~~-~~~l~~L~~L~Ls~n-~l~~~-~~~~l~-~l~~L~~  394 (956)
                      ++|.+++..+..+..++      +|++|++++| .++.. ... ...+++|++|+++++ .++.. +...+. ..++|+.
T Consensus        79 ~~~~l~~~~~~~l~~~~------~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~  152 (284)
T d2astb2          79 EGLRLSDPIVNTLAKNS------NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ  152 (284)
T ss_dssp             TTCBCCHHHHHHHTTCT------TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred             cccCCCcHHHHHHhcCC------CCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccch
Confidence            99998877778887776      8999999986 44421 111 456789999999986 34322 222333 3578999


Q ss_pred             EECcCc--cCccccCHHhhhCCCCCCEEEcCCCc-ccccccCCcCCCCCcceEEcCCC-CCCCCCchhhhcccceeEEEe
Q 046848          395 LFLHNN--SLRGVISEAFLSNLSNLTILYLADNS-LTLEFSHDWIPPFQLSQVNLGSC-KIGPRFPKWLRNQNQILSLDI  470 (956)
Q Consensus       395 L~L~~n--~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L  470 (956)
                      |+++++  .++......+..++++|++|++++|. ++......+..+++|++|++++| .+++.....+.++++|+.|++
T Consensus       153 L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l  232 (284)
T d2astb2         153 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV  232 (284)
T ss_dssp             EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             hhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEee
Confidence            999875  35444334456778999999999864 66666666777888999999986 466555667788889999999


Q ss_pred             eCCCCCCCccchhhhccCCcceEecccccccccCC
Q 046848          471 SNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLP  505 (956)
Q Consensus       471 s~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p  505 (956)
                      +++ +++..-..+...+++   |.+..+.++...+
T Consensus       233 ~~~-~~d~~l~~l~~~lp~---L~i~~~~ls~~~~  263 (284)
T d2astb2         233 FGI-VPDGTLQLLKEALPH---LQINCSHFTTIAR  263 (284)
T ss_dssp             TTS-SCTTCHHHHHHHSTT---SEESCCCSCCTTC
T ss_pred             eCC-CCHHHHHHHHHhCcc---ccccCccCCCCCC
Confidence            887 444443444443444   4455666654433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.5e-13  Score=122.99  Aligned_cols=104  Identities=25%  Similarity=0.276  Sum_probs=68.3

Q ss_pred             CEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcEEecc
Q 046848          116 TYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLS  195 (956)
Q Consensus       116 ~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls  195 (956)
                      |+|||++|+++  .++ .++.+++|++|++++|.++ .+|..++.+++|++|++++|.+.   ..+.++.+++|++|+++
T Consensus         1 R~L~Ls~n~l~--~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~---~l~~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLT--VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCS--SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC---CCGGGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCC--CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc---ccCccccccccCeEECC
Confidence            56777777776  344 3667777777777777776 56666777777777777777662   22346777777777777


Q ss_pred             cccCCCCchhHHhhcCCCCCCEEEecCCCCCC
Q 046848          196 FSNLSKFSNWMQVLSKLDSLKALYLISCDLPP  227 (956)
Q Consensus       196 ~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~  227 (956)
                      +|++++++. +..++.+++|++|++++|.+..
T Consensus        74 ~N~i~~~~~-~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          74 NNRLQQSAA-IQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SSCCCSSST-TGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCccCCCCC-chhhcCCCCCCEEECCCCcCCc
Confidence            777766543 2345666666666666666543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=9.2e-15  Score=158.16  Aligned_cols=238  Identities=17%  Similarity=0.165  Sum_probs=157.0

Q ss_pred             CceeEEECCCCCCCCC----CCccccCCCCCCEEEcCCCccccc----------CCCCcCCCCCcCEEEccCceeeee--
Q 046848          559 HKLDYIDLSNNLLSGR----LPDCWSQFDSLAILNLANNSFFGK----------IPDSIGFLKNLQSLSLYNNRLTGE--  622 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----------~p~~~~~l~~L~~L~L~~N~l~~~--  622 (956)
                      ..++.|+|++|.+...    +...+...++|+.++++++.....          +...+..+++|+.|+|++|.++..  
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            6788888888877542    233456678888888887654311          122345678888888888887643  


Q ss_pred             --CCccccCCCCCcEEecCCccccccCChhH------------hhcCccCcEEEccCCccccc----CCccccCCCCcCE
Q 046848          623 --LPSFFTNGSQLTLMDLGKNGLSGEIPTWI------------GEGLVNLVVLSLKSNKFNGS----IPLQLCHLANVQI  684 (956)
Q Consensus       623 --~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~------------~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~  684 (956)
                        +...+..+++|+.|++++|.+...-...+            ....+.|+.+++++|++...    +...+...+.|+.
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence              33455667888899998888752211111            11456788888888887632    2334556778899


Q ss_pred             EeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCC
Q 046848          685 LDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSS  764 (956)
Q Consensus       685 L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  764 (956)
                      |+|++|+++......  .+.                                            ......+.|+.|+|++
T Consensus       191 L~L~~n~i~~~g~~~--~l~--------------------------------------------~~l~~~~~L~~L~Ls~  224 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEH--LLL--------------------------------------------EGLAYCQELKVLDLQD  224 (344)
T ss_dssp             EECCSSCCCHHHHHH--HHH--------------------------------------------TTGGGCTTCCEEECCS
T ss_pred             ccccccccccccccc--chh--------------------------------------------hhhcchhhhccccccc
Confidence            999988876321000  000                                            0011234458899999


Q ss_pred             CCCCCC----CchhhhccccCCEEEcccccccccCCccc----cC--CCCCCEEECCCCccCcC----Cccccc-CCCCC
Q 046848          765 NKLGGE----VPEEIMDLAGLIALNLSRNTLTGQITPKI----GQ--LKSLDFLDLSRNQFFGS----IPSSLS-QLSRL  829 (956)
Q Consensus       765 N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l----~~--l~~L~~L~Ls~N~l~~~----ip~~l~-~l~~L  829 (956)
                      |.++..    +...+..+++|++|+|++|.|++.....+    ..  .+.|++||+++|+++..    +...+. +++.|
T Consensus       225 N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L  304 (344)
T d2ca6a1         225 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL  304 (344)
T ss_dssp             SCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC
T ss_pred             ccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCC
Confidence            998643    44567788999999999999986533333    22  46799999999998753    233342 56789


Q ss_pred             CeEECcCCcceec
Q 046848          830 SVMDLSYNNLSGK  842 (956)
Q Consensus       830 ~~L~ls~N~l~g~  842 (956)
                      ++|++++|++...
T Consensus       305 ~~L~l~~N~~~~~  317 (344)
T d2ca6a1         305 LFLELNGNRFSEE  317 (344)
T ss_dssp             CEEECTTSBSCTT
T ss_pred             CEEECCCCcCCCc
Confidence            9999999998643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.8e-13  Score=129.17  Aligned_cols=65  Identities=18%  Similarity=0.221  Sum_probs=34.3

Q ss_pred             ccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCC
Q 046848          627 FTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGI  695 (956)
Q Consensus       627 ~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  695 (956)
                      |.++.++++|||++|+|+ .+|... ..+++|+.|++++|+++. ++ .+..+++|++|++++|+++..
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~-~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l   78 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLG-ATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRI   78 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGG-GGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEE
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccc-cccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCC
Confidence            344555555666666655 454322 245556666666665552 22 355555566666666555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=6.8e-13  Score=118.72  Aligned_cols=81  Identities=31%  Similarity=0.381  Sum_probs=53.8

Q ss_pred             eEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCC-cccccCCCCCCeEECcC
Q 046848          758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSI-PSSLSQLSRLSVMDLSY  836 (956)
Q Consensus       758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~ls~  836 (956)
                      ++||+++|+|+ .+|+.++.+++|+.|++++|+|++ +| .++.+++|+.|++++|+++... ...+..+++|+++++++
T Consensus        23 ~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          23 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             CEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCC
Confidence            66677777666 456666777777777777777763 33 4677777777777777776433 24566677777777777


Q ss_pred             Cccee
Q 046848          837 NNLSG  841 (956)
Q Consensus       837 N~l~g  841 (956)
                      |++++
T Consensus       100 N~i~~  104 (124)
T d1dcea3         100 NSLCQ  104 (124)
T ss_dssp             SGGGG
T ss_pred             CcCCc
Confidence            77754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=5.1e-14  Score=152.20  Aligned_cols=61  Identities=25%  Similarity=0.314  Sum_probs=33.8

Q ss_pred             eeEEEcCCCCCCCCCchh----hhc--cccCCEEEcccccccccC----Ccccc-CCCCCCEEECCCCccCc
Q 046848          757 VKILDLSSNKLGGEVPEE----IMD--LAGLIALNLSRNTLTGQI----TPKIG-QLKSLDFLDLSRNQFFG  817 (956)
Q Consensus       757 L~~L~Ls~N~l~~~~p~~----l~~--l~~L~~L~Ls~N~l~~~i----p~~l~-~l~~L~~L~Ls~N~l~~  817 (956)
                      |++|+|++|.|++.-...    +..  .+.|++||+++|+++...    ...+. +.++|+.|+|++|++..
T Consensus       245 L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             chhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            356666666665432222    222  245677777777765432    22232 45677777777777753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.9e-13  Score=126.78  Aligned_cols=123  Identities=19%  Similarity=0.207  Sum_probs=74.0

Q ss_pred             CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      .++++|+|++|+|+ .++..+..+++|+.|++++|+++.. + .|..+++|++|++++|+++...+..+..+++|+.|++
T Consensus        18 ~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          18 VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            45667777777776 3455556666777777777776633 2 4666667777777777776555555566666777777


Q ss_pred             CCccccccCCh-hHhhcCccCcEEEccCCcccccCCc----cccCCCCcCEEe
Q 046848          639 GKNGLSGEIPT-WIGEGLVNLVVLSLKSNKFNGSIPL----QLCHLANVQILD  686 (956)
Q Consensus       639 s~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~  686 (956)
                      ++|+++ .++. .....+++|++|++++|+++. .|.    .+..+++|+.||
T Consensus        95 ~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             cccccc-ccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            777665 4432 112246666666666666653 221    345556666665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=3e-13  Score=132.37  Aligned_cols=131  Identities=24%  Similarity=0.307  Sum_probs=79.8

Q ss_pred             cCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccccc
Q 046848          646 EIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLA  725 (956)
Q Consensus       646 ~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~  725 (956)
                      .+|..+. .+++|++|+|++|+++. ++ .+..+++|+.|+|++|.++. +|..+..++.                    
T Consensus        39 ~l~~sl~-~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~--------------------   94 (198)
T d1m9la_          39 KMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADT--------------------   94 (198)
T ss_dssp             CCHHHHH-HTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHH--------------------
T ss_pred             hhhhHHh-cccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccccc--------------------
Confidence            4444554 46666666666666653 33 35666667777777776652 2322222222                    


Q ss_pred             ccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCC-ccccCCCC
Q 046848          726 YDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQIT-PKIGQLKS  804 (956)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~  804 (956)
                                                     |+.|++++|+++. + +.+..+++|+.|+|++|+++.... ..+..+++
T Consensus        95 -------------------------------L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~  141 (198)
T d1m9la_          95 -------------------------------LEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK  141 (198)
T ss_dssp             -------------------------------CCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTT
T ss_pred             -------------------------------ccccccccccccc-c-ccccccccccccccccchhccccccccccCCCc
Confidence                                           3677777777764 2 346777778888888887764221 35677778


Q ss_pred             CCEEECCCCccCcCCccc----------ccCCCCCCeEE
Q 046848          805 LDFLDLSRNQFFGSIPSS----------LSQLSRLSVMD  833 (956)
Q Consensus       805 L~~L~Ls~N~l~~~ip~~----------l~~l~~L~~L~  833 (956)
                      |+.|+|++|+++...+..          +..+++|+.||
T Consensus       142 L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            888888888776543332          45577777776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=2.5e-13  Score=132.95  Aligned_cols=52  Identities=27%  Similarity=0.341  Sum_probs=30.0

Q ss_pred             eEEEcCCCCCCCCCc-hhhhccccCCEEEcccccccccCCcc----------ccCCCCCCEEE
Q 046848          758 KILDLSSNKLGGEVP-EEIMDLAGLIALNLSRNTLTGQITPK----------IGQLKSLDFLD  809 (956)
Q Consensus       758 ~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~----------l~~l~~L~~L~  809 (956)
                      +.|++++|+++.... ..+..+++|+.|+|++|.+....+..          +..+++|+.||
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            555555555553211 34566667777777777665443322          45677777776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.7e-11  Score=114.42  Aligned_cols=85  Identities=19%  Similarity=0.079  Sum_probs=72.3

Q ss_pred             eEEEcCCCC-CCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcC
Q 046848          758 KILDLSSNK-LGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSY  836 (956)
Q Consensus       758 ~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  836 (956)
                      +.|++++|+ ++...+..|.++++|+.|+|++|+|+...|..|..+++|++|+|++|+|+...+..+.. ..|+.|+|++
T Consensus        34 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~  112 (156)
T d2ifga3          34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSG  112 (156)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECCS
T ss_pred             CeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-ccccccccCC
Confidence            778887664 77666778999999999999999999888888999999999999999999655555554 4699999999


Q ss_pred             CcceecC
Q 046848          837 NNLSGKI  843 (956)
Q Consensus       837 N~l~g~i  843 (956)
                      |+|.|.+
T Consensus       113 Np~~C~C  119 (156)
T d2ifga3         113 NPLHCSC  119 (156)
T ss_dssp             SCCCCCG
T ss_pred             CcccCCc
Confidence            9998765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.2e-11  Score=115.41  Aligned_cols=107  Identities=16%  Similarity=0.105  Sum_probs=84.7

Q ss_pred             ceeEEECCCCCCCCCCCccccCCCCCCEEEcCCC-cccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848          560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANN-SFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL  638 (956)
Q Consensus       560 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (956)
                      ..+.++.+++.+. ..|..+..+++|++|++++| .++...+.+|.++++|+.|++++|+|+.+.|.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3456777777777 55677788888888888765 477666677888888888888888888888888888888888888


Q ss_pred             CCccccccCChhHhhcCccCcEEEccCCccc
Q 046848          639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFN  669 (956)
Q Consensus       639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~  669 (956)
                      ++|+++ .+|..+++ ..+|+.|+|++|.+.
T Consensus        88 s~N~l~-~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALE-SLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCS-CCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             cCCCCc-ccChhhhc-cccccccccCCCccc
Confidence            888888 78877774 557888888888774

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3.5e-08  Score=92.15  Aligned_cols=66  Identities=26%  Similarity=0.257  Sum_probs=32.1

Q ss_pred             CCCCCcCEEEccCceeeee--CCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccc
Q 046848          604 GFLKNLQSLSLYNNRLTGE--LPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNG  670 (956)
Q Consensus       604 ~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~  670 (956)
                      ..+++|++|+|++|+|+..  ++..+..+++|+.|+|++|.++ .++...+....+|++|++++|++..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCc
Confidence            3455566666666655532  1233445555555555555555 3433222123345555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=9.9e-08  Score=89.00  Aligned_cols=76  Identities=24%  Similarity=0.189  Sum_probs=37.5

Q ss_pred             eEEEcCCCCCCCC--CchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcc-------cccCCCC
Q 046848          758 KILDLSSNKLGGE--VPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPS-------SLSQLSR  828 (956)
Q Consensus       758 ~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-------~l~~l~~  828 (956)
                      ++|||++|+|+..  ++..+..+++|+.|||++|+++...+-.+.....|+.|++++|+++.....       .+..+++
T Consensus        68 ~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~  147 (162)
T d1koha1          68 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPK  147 (162)
T ss_dssp             CCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTT
T ss_pred             CEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCC
Confidence            4444555554432  123345555666666666666532222223334556666666666544332       1345566


Q ss_pred             CCeEE
Q 046848          829 LSVMD  833 (956)
Q Consensus       829 L~~L~  833 (956)
                      |+.||
T Consensus       148 L~~LD  152 (162)
T d1koha1         148 LLRLD  152 (162)
T ss_dssp             CCEET
T ss_pred             CCEEC
Confidence            66654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.47  E-value=4.1e-05  Score=70.99  Aligned_cols=64  Identities=16%  Similarity=0.106  Sum_probs=31.7

Q ss_pred             hhccccCCEEEccccccccc----CCccccCCCCCCEEECCCCccCcC-------CcccccCCCCCCeEECcCCc
Q 046848          775 IMDLAGLIALNLSRNTLTGQ----ITPKIGQLKSLDFLDLSRNQFFGS-------IPSSLSQLSRLSVMDLSYNN  838 (956)
Q Consensus       775 l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~-------ip~~l~~l~~L~~L~ls~N~  838 (956)
                      +...+.|+.|+|++|.+++.    +-..+...++|++|++++|.+...       +.+.+..-+.|+.|+++++.
T Consensus        68 L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          68 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            33445555555555555432    122344445566666666554321       23334445566666666553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.41  E-value=9.6e-05  Score=68.41  Aligned_cols=39  Identities=8%  Similarity=0.176  Sum_probs=21.1

Q ss_pred             CCCCCcEEECCCC-cCcc-----ccccccCCCCCCEEEccCCCCC
Q 046848          288 HMPSLNTLFLASN-QFRE-----IPKSLGNMCNLKSLTLSYNTLR  326 (956)
Q Consensus       288 ~l~~L~~L~Ls~n-~l~~-----ip~~l~~l~~L~~L~Ls~n~l~  326 (956)
                      +.++|++|+|+++ .++.     +-..+...+.|++|+|++|.+.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            3456666666653 3433     2234455566666666666654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.59  E-value=0.00061  Score=62.75  Aligned_cols=68  Identities=15%  Similarity=0.176  Sum_probs=36.8

Q ss_pred             CCCCCCcEEECCC-CcCcc-----ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCc
Q 046848          287 GHMPSLNTLFLAS-NQFRE-----IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEIT  356 (956)
Q Consensus       287 ~~l~~L~~L~Ls~-n~l~~-----ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~  356 (956)
                      .+.+.|++|++++ +.++.     +-..+...++|++|++++|.++......+...-.  ..+.++.+++++|.+.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~--~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK--VNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH--HCSSCCEEECCSSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHh--hcccchhhhhcccccc
Confidence            3456777777776 34543     2345566777888888887776543333322100  0115555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.46  E-value=0.00032  Score=64.72  Aligned_cols=89  Identities=15%  Similarity=0.135  Sum_probs=42.1

Q ss_pred             CCCCCcCEEEccCceeeee----CCccccCCCCCcEEecCCccccccCChhHhh---cCccCcEEEc--cCCcccc----
Q 046848          604 GFLKNLQSLSLYNNRLTGE----LPSFFTNGSQLTLMDLGKNGLSGEIPTWIGE---GLVNLVVLSL--KSNKFNG----  670 (956)
Q Consensus       604 ~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~---~l~~L~~L~L--~~N~l~~----  670 (956)
                      ...+.|++|++++|.++..    +-..+...++++.+++++|.+....-..+++   ..++|+.++|  ++|.+..    
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            3444555555555554421    1223344455666666665554322211111   2445555444  3444432    


Q ss_pred             cCCccccCCCCcCEEeccCCcC
Q 046848          671 SIPLQLCHLANVQILDLSSNNI  692 (956)
Q Consensus       671 ~~p~~l~~l~~L~~L~Ls~N~l  692 (956)
                      .+...+...++|+.|+++.+..
T Consensus       123 ~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCcCEEeCcCCCC
Confidence            2333455667777777766543