Citrus Sinensis ID: 046859

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
Protein Sequence
MELDTKLRDQAHHHASQQQPIFLSENYMKPELPFEVPSSKGTTITNNLQDFDRHHHDLDDDDGHHHLFVNLNGSSSTNPFSVHTSCFESLDAFPYNYSSSSNFDFYECKPFADHNYSSGNGQVMDNFQSGGYLNYHQQQQVNPVDILGSDHRSHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRASLLQDYIKSLNLDAAGSSKHQRKNSSNINANNKSKAATKSSPPAAAEQDFCRSDHLVPDFDFNEVPDFDFDDKLFDENCSIDSLIEEMTCAPVVDHQKSLDMKVPPLDVPPVMEFEVKKELDLVEMISQANL
Secondary Structure (PSIPRED)
ccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccHHccccccccEEcccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHcHHccccccccccccHHccccccccccccccccccHHHHHcHHcccccccccccccccEEEEEccccccccEEEccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccHHHHHHHHHHcccccHHHccHHccccHccccHHEccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHcccccHHHHccccccccccccHHHHHccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccEEEHHccHHHHHHHccc
Coil and Loop (DISEMBL)
MELDTKLRdqahhhasqqqpiflsenymkpelpfevpsskgttitnnlqdfdrhhhdlddddghhhlfvnlngssstnpfsvhtscfesldafpynyssssnfdfyeckpfadhnyssgngqvmdnfqsggylnyhqqqqvnpvdilgsdhrshmqldfqemkpvnflvsdevscvsagngyykkagmdknnnraYHSVRKtmkigkksnvvkgqwtteEDRLLIRLVDQFGIRKWSHIAqmlpgrigkQCRERWhnhlrpdikkdiwSEEEDKALIEAHAEIGNKWAEIAKrlpgrtensIKNHWNATKrrqfskrkcrskypraSLLQDYIKSLnldaagsskhqrknssninannkskaatkssppaaaeqdfcrsdhlvpdfdfnevpdfdfddklfdenCSIDSLIeemtcapvvdhqksldmkvppldvppvmefevKKELDLVEMISQANL
Flexible Loop (DISEMBL)
MELDTklrdqahhhasqqqpiflsENYMKPELPFEVPSSKGTTITNNLQDFDRHHHDLDDDDGHHHLFVNLNGSSSTNPFSVHTSCFESLDAFPYNYSSSSNFDFYECKPFADHNYSSGNGQVMDNFQSGGYLNYHQQQQVNPVDILGSDHRSHMQLDFQEMKPVNFLVSDEVSCVSAGNgyykkagmdknnnRAYHSvrktmkigkksnvvkgqwtteedrLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNhlrpdikkdiwsEEEDKALIEAHAEIGNKWAEIAKrlpgrtensiknhwnatkrrqfskrkcrskypRASLLQDYIKSLNLDaagsskhqrknssninannkskaatkssppAAAEQDFCRSDHLVPDFDFNEVPDFDFDDKLFDENCSIDSLIEEMTCAPVVDHQKSLDMKVPPLDVPPVMEFEVKKELDLVEMISQANL
Low Complexity Region (SEG)
MELDTKLRDQAHHHASQQQPIFLSENYMKPELPFEVPSSKGTTITNNLQdfdrhhhdlddddghhhLFVNLNGSSSTNPFSVHTSCFESLDAFPynyssssnFDFYECKPFADHNYSSGNGQVMDNFQSGGYLNYHQQQQVNPVDILGSDHRSHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRASLLQDYIKSLNLDAAGSSKHQRknssninannkskaatkssppaaaEQDFCRSDHLVPDFDFNEVPDFDFDDKLFDENCSIDSLIEEMTCAPVVDHQKSLDMKVPPLDVPPVMEFEVKKELDLVEMISQANL
Disordered region (IsUnstruct)
***************************************************************HHHLFVNLNG****NPFSVHTSCFESLDAFPYNYSSSSNFDFYECKPFADHNYSSGNGQVMDNFQSGGYLNYHQQQQVNPVDILGSDH**HMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGM*****RAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRL*********************************LLQDYI******************************************FCRSDHLVPDFDFNEVPDFDFDDKLFDENCSIDSLIEEMTCAPVVDHQKSLDMKV**LDVPPVMEFEV***************
Disordered Region (DISOPRED)
*****************QQPIFLSENYMKPELPFEVPSSKGTTITNNLQDFDRHHHDLDDDDGHH********************CFESLDAFPYNYSSSSNFDFYECKPF***************FQSGGYLNYH***************************************************************************VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATK**********************************************************************************************************************************FEVKKELDLVEMISQA**
Disordered Region (DISEMBL)
******************QPIFLSENYMKPELPFEVPSSKGTTITNNLQDFDRHHHDLDDDDGHHHLFVNLNGSSSTNPFSVHTSCFESLDAFPYNYSSSSNFDFYECKPFADHNYSSGNGQVMDNFQSGGYLNYHQQQQVNPVDILGSDHRSHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNAT*************YPRASLLQDYIKSLNLDA************NINAN****************QDFCRSDHLVPDFDFNEVPDFDFDDKLFDENCSIDSLIEEMTCAPVVDHQKSLDMKVPPLDVPPVMEFEVKKELDLVEMISQANL
Disordered Region (DISPRO)
**LDTKLRDQAHHHASQQQPIFLSENYMKPELPFEVPSSKGTTITNNLQDFDRHHHDLDDDDGHHHLFVNLNGSSSTNPFSVHTSCFESLDAFPYNYSSSSNFDFYECKPFADHNYSSGNGQVMDNFQSGGYLNYHQQQQVNPVDILGSDHRSHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRASL*******************************************************PDFDFNEVPDFDFDDKLFDENCSIDSLIEEMTCAPVVD*QKSLDMKVPPLDVPPVMEFEVKKELDLVEMISQA**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELDTKLRDQAHHHASQQQPIFLSENYMKPELPFEVPSSKGTTITNNLQDFDRHHHDLDDDDGHHHLFVNLNGSSSTNPFSVHTSCFESLDAFPYNYSSSSNFDFYECKPFADHNYSSGNGQVMDNFQSGGYLNYHQQQQVNPVDILGSDHRSHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRASLLQDYIKSLNLDAAGSSKHQRKNSSNINANNKSKAATKSSPPAAAEQDFCRSDHLVPDFDFNEVPDFDFDDKLFDENCSIDSLIEEMTCAPVVDHQKSLDMKVPPLDVPPVMEFEVKKELDLVEMISQANL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	458	2.2.26 [Sep-21-2011]
Q9S7L2	427	Transcription factor MYB9	yes	no	0.659	0.707	0.513	7e-83
P51960	751	Myb-related protein A OS=	yes	no	0.288	0.175	0.537	3e-38
P10243	752	Myb-related protein A OS=	yes	no	0.253	0.154	0.584	4e-38
P04197	657	Myb protein OS=Drosophila	yes	no	0.227	0.158	0.625	1e-37
P52550	757	Myb-related protein A OS=	yes	no	0.281	0.170	0.528	2e-37
Q08759	624	Transcriptional activator	N/A	no	0.224	0.165	0.631	3e-37
P46200	640	Transcriptional activator	no	no	0.255	0.182	0.564	6e-37
P10242	640	Transcriptional activator	no	no	0.255	0.182	0.564	6e-37
P01103	641	Transcriptional activator	no	no	0.257	0.184	0.559	7e-37
P06876	636	Transcriptional activator	no	no	0.231	0.166	0.603	7e-37

>sp|Q9S7L2|MYB98_ARATH Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1

 Score =  308 bits (788), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 169/329 (51%), Positives = 218/329 (66%), Gaps = 27/329 (8%)

Query: 104 DFYECKP-FADHNYSSGNGQVMDNFQSGGYLNYHQQQQVN-------PVDILGSDHRSHM 155
           DFYE KP   +H++     Q ++N  S    N+H  Q++N       P+D+  ++     
Sbjct: 96  DFYETKPNLMNHHHF----QAVEN--SYFTRNHHHHQEINLVDEHDDPMDLEQNNMMMMR 149

Query: 156 QLDF-----QEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTM-----KI 205
            + F     +  KP+NF++ DE+SCVSA N  Y+    +K        +  +      K 
Sbjct: 150 MIPFDYPPTETFKPMNFVMPDEISCVSADNDCYRATSFNKTKPFLTRKLSSSSSSSSWKE 209

Query: 206 GKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKK 265
            KKS +VKGQWT EEDR+LI+LV+++G+RKWSHIAQ+LPGRIGKQCRERWHNHLRPDIKK
Sbjct: 210 TKKSTLVKGQWTAEEDRVLIQLVEKYGLRKWSHIAQVLPGRIGKQCRERWHNHLRPDIKK 269

Query: 266 DIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPR 325
           + WSEEED+ LIE H EIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPR
Sbjct: 270 ETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPR 329

Query: 326 ASLLQDYIKSLNLDAAGSSKHQRKNSSNINANNKSKAATKSSPPAAAEQDFCRSDHLVPD 385
            SLLQDYIKSLN+ A  +S    +      +NNK K    +      E++    D +VP+
Sbjct: 330 PSLLQDYIKSLNMGALMASSVPARGRRR-ESNNKKKDVVVAVEEKKKEEEVYGQDRIVPE 388

Query: 386 FDFNEVPDFDFDDKLFDENCSIDSLIEEM 414
             F +  DF F++KL +E CSIDSL++++
Sbjct: 389 CVFTD--DFGFNEKLLEEGCSIDSLLDDI 415

Transcription factor. Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte. Involved in pollen tube guidance to the micropyle.
Arabidopsis thaliana (taxid: 3702)

>sp|P51960|MYBA_MOUSE Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2

 Score =  159 bits (403), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 100/145 (68%), Gaps = 13/145 (8%)

Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
           ++KG WT EED+ +I LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK  W+E
Sbjct: 85  LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTE 144

Query: 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRASLLQ 330
           EED+ + EAH  +GN+WAEIAK LPGRT+NSIKNHWN+T RR         K  +   LQ
Sbjct: 145 EEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRR---------KVEQEGYLQ 195

Query: 331 DYIKSLNLDAAGSSKHQRKNSSNIN 355
           D IKS       SSK Q K  + ++
Sbjct: 196 DGIKS----ERSSSKLQHKPCATMD 216

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Mus musculus (taxid: 10090)

>sp|P10243|MYBA_HUMAN Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2

 Score =  159 bits (402), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 92/125 (73%), Gaps = 9/125 (7%)

Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
           ++KG WT EED+ +I LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK  W+E
Sbjct: 85  LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTE 144

Query: 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRASLLQ 330
           EED+ + EAH  +GN+WAEIAK LPGRT+NSIKNHWN+T RR         K  +   LQ
Sbjct: 145 EEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRR---------KVEQEGYLQ 195

Query: 331 DYIKS 335
           D IKS
Sbjct: 196 DGIKS 200

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Homo sapiens (taxid: 9606)

>sp|P04197|MYB_DROME Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2

 Score =  157 bits (398), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 88/104 (84%)

Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
           ++KG WT +ED ++I+LV  FG +KW+ IA+ L GRIGKQCRERWHNHL P+IKK  W+E
Sbjct: 134 LIKGPWTRDEDDMVIKLVRNFGPKKWTLIARYLNGRIGKQCRERWHNHLNPNIKKTAWTE 193

Query: 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQF 314
           +ED+ + +AH E+GN+WA+IAKRLPGRT+N+IKNHWN+T RR++
Sbjct: 194 KEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRKY 237

DNA-binding protein that specifically recognizes the sequence 5'-YAAC[GT]G-3'. Component of the DREAM complex, a multiprotein complex that can both act as a transcription activator or repressor depending on the context. In follicle cells, the complex plays a central role in the site-specific DNA replication at the chorion loci. During development, the complex represses transcription of developmentally controlled E2F target genes.

Drosophila melanogaster (taxid: 7227)

>sp|P52550|MYBA_CHICK Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/138 (52%), Positives = 95/138 (68%), Gaps = 9/138 (6%)

Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
           ++KG WT EED+ +I LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK  W+E
Sbjct: 85  LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTE 144

Query: 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRASLLQ 330
            ED+ + EAH  +GN+WAEIAK LPGRT+NSIKNHWN+T RR         K  +   LQ
Sbjct: 145 AEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRR---------KVEQEGYLQ 195

Query: 331 DYIKSLNLDAAGSSKHQR 348
           D  KS +     S+  Q+
Sbjct: 196 DGTKSSSERTGSSTLAQK 213

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Gallus gallus (taxid: 9031)

>sp|Q08759|MYB_XENLA Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1

 Score =  156 bits (395), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 85/103 (82%)

Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
           ++KG WT EED+ +I LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK  W+E
Sbjct: 87  LIKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTE 146

Query: 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
           EED+ + EAH  +GN+WAEIAK LPGRT+N+IKNHWN+T RR+
Sbjct: 147 EEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 189

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Xenopus laevis (taxid: 8355)

>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1

 Score =  155 bits (392), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 90/117 (76%)

Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
           ++KG WT EED+ +I LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK  W+E
Sbjct: 90  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 149

Query: 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRAS 327
           EED+ + +AH  +GN+WAEIAK LPGRT+N+IKNHWN+T RR+  +     +  +AS
Sbjct: 150 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKAS 206

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Bos taurus (taxid: 9913)

>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2

 Score =  155 bits (392), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 90/117 (76%)

Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
           ++KG WT EED+ +I LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK  W+E
Sbjct: 90  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 149

Query: 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRAS 327
           EED+ + +AH  +GN+WAEIAK LPGRT+N+IKNHWN+T RR+  +     +  +AS
Sbjct: 150 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKAS 206

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Homo sapiens (taxid: 9606)

>sp|P01103|MYB_CHICK Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=2 SV=1

 Score =  155 bits (392), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 90/118 (76%)

Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
           ++KG WT EED+ +I LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK  W+E
Sbjct: 90  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 149

Query: 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRASL 328
           EED+ + +AH  +GN+WAEIAK LPGRT+N+IKNHWN+T RR+  +     +  +A L
Sbjct: 150 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKAGL 207

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Gallus gallus (taxid: 9031)

>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2

 Score =  155 bits (391), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 64/106 (60%), Positives = 86/106 (81%)

Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
           ++KG WT EED+ +I LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK  W+E
Sbjct: 90  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 149

Query: 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSK 316
           EED+ + +AH  +GN+WAEIAK LPGRT+N+IKNHWN+T RR+  +
Sbjct: 150 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
356513613	503	PREDICTED: uncharacterized protein LOC10	0.930	0.846	0.518	1e-125
356564998	489	PREDICTED: transcription factor MYB98-li	0.917	0.858	0.525	1e-122
225457011	432	PREDICTED: transcription factor MYB98 [V	0.927	0.983	0.535	1e-122
255540645	366	myb119, putative [Ricinus communis] gi|2	0.753	0.942	0.631	1e-119
224133554	428	predicted protein [Populus trichocarpa]	0.829	0.887	0.560	1e-114
224119370	447	predicted protein [Populus trichocarpa]	0.945	0.968	0.519	1e-110
357461941	447	Myb [Medicago truncatula] gi|355490300|g	0.893	0.914	0.503	1e-105
449477646	345	PREDICTED: transcription factor MYB98-li	0.661	0.878	0.601	1e-104
449441015	345	PREDICTED: transcription factor MYB98-li	0.661	0.878	0.601	1e-103
224133778	427	predicted protein [Populus trichocarpa]	0.864	0.927	0.511	1e-103

>gi|356513613|ref|XP_003525506.1| PREDICTED: uncharacterized protein LOC100816653 [Glycine max]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 256/494 (51%), Positives = 323/494 (65%), Gaps = 68/494 (13%)

Query: 1   MELDTKLRDQAHHHASQQQPIFLSENYMKP----ELPFEVPSSKGTTITNNLQDFDRHHH 56
           M+++T L +     ASQ QP+ L ENY+KP    +LPF  PS++G      LQDF  HH 
Sbjct: 31  MDIETNLTENC---ASQSQPMDLHENYLKPSMEDQLPFGTPSTQGF-----LQDF--HHI 80

Query: 57  DLDDDDGHHHLFVNLNGSSSTNP-FSVHTSCFESLDAFPYNYSSSSNFDFYECKPFADHN 115
           D        H F ++NGSSS+NP F V T  F+  D      S+  +F+ YECKP A+ N
Sbjct: 81  D--------HQF-HVNGSSSSNPIFGVQTPNFDPFDQNVTCESAPPDFEAYECKPLAESN 131

Query: 116 YSSGNGQVMDNFQSGGY-LNYHQQQQVNPVDILGSDHRSHMQLDFQEMKPVNFLVSDEVS 174
              G+  +M+NFQ  GY LN     + N +D++ ++ +S+M  +  E KP+NF+V DEVS
Sbjct: 132 -GIGHAHLMNNFQYAGYSLNL---PRTNQLDLMVAN-QSYMTFNALETKPLNFVVPDEVS 186

Query: 175 CVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIR 234
           C+S  N YYK+ G++KN  R   S R+T K  KKSN+VKGQWT++EDRLLI+LV+QFG+R
Sbjct: 187 CISPPN-YYKRVGLNKNL-RESPSTRRTFKARKKSNIVKGQWTSDEDRLLIQLVEQFGVR 244

Query: 235 KWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRL 294
           KWSHIAQ LPGRIGKQCRERWHNHLRPDIKKD W+EEEDK LI+AHAEIGNKWAEIAK+L
Sbjct: 245 KWSHIAQALPGRIGKQCRERWHNHLRPDIKKDTWTEEEDKILIQAHAEIGNKWAEIAKKL 304

Query: 295 PGRTENSIKNHWNATKRRQFSKRKCRSKYPRASLLQDYIKSLNLDAAGSSKHQRKNSSNI 354
           PGRTENSIKNHWNATKRRQ+SKRKCRSKYPR SLLQ+YIKSLNLD      +++K++ N 
Sbjct: 305 PGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQEYIKSLNLDKNPPIDYRKKSAKNA 364

Query: 355 NANNKSKAATKSSPPAAAEQDFCRSDHLVPDFDFNEVPDFDFDDKLFDENCSIDSLIEEM 414
           NAN  S     + P  + +  FC +  +VP +DFNEVPDF  DD LF+E CSIDSL+++M
Sbjct: 365 NANTNSNGKAAAQPQCSDQ--FCLNSQMVPRYDFNEVPDFCLDDNLFEEGCSIDSLLDDM 422

Query: 415 TCAPVVDHQKSLDMKVPPLDVPPVME-------------------------------FEV 443
             A  +D +K  D K+  +   P ME                                EV
Sbjct: 423 QSASTMD-EKGFDEKI--MQCAPTMEGKQSHQGGMQCVHVVDVDVHHETEMMAHTNGIEV 479

Query: 444 KKELDLVEMISQAN 457
           KKELD VEM+S  N
Sbjct: 480 KKELDFVEMMSHMN 493

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564998|ref|XP_003550732.1| PREDICTED: transcription factor MYB98-like [Glycine max]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/481 (52%), Positives = 315/481 (65%), Gaps = 61/481 (12%)

Query: 14  HASQQQPIFLSENYMKP----ELPFEVPSSKGTTITNNLQDFDRHHHDLDDDDGHHHLFV 69
           +AS+ +P+ L ENY+KP    +LPF  PS++G      LQD   HH D        HL  
Sbjct: 23  YASESKPMHLQENYLKPSMEDQLPFGTPSTQGF-----LQD--SHHID--------HLQF 67

Query: 70  NLNGSSSTNP-FSVHTSCFESLDAFPYNYSSSSNFDFYECKPFADHNYSSGNGQVMDNFQ 128
           ++NGSSS+NP F V T  F+  D      S+  +F+ YECK FA+ N  SG+  +MDNFQ
Sbjct: 68  HVNGSSSSNPIFGVQTPNFDPFDHNVTCESAPPDFEAYECKLFAESN-GSGHAHLMDNFQ 126

Query: 129 SGGY-LNYHQQQQVNPVDILGSDHRSHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAG 187
             GY LN     + N +D++ ++ +S++  +  E KP+NF+V DEVSC+S  N YYK+ G
Sbjct: 127 YVGYSLNL---PRTNQLDLMVAN-QSYVPFNALETKPLNFVVPDEVSCISPPN-YYKRVG 181

Query: 188 MDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRI 247
           ++KN  R   S R T K  KKSN+VKGQWT++EDRLLI+LV+Q+G+RKWSHIAQ LPGRI
Sbjct: 182 LNKNL-RESPSTRITFKARKKSNIVKGQWTSDEDRLLIQLVEQYGLRKWSHIAQALPGRI 240

Query: 248 GKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWN 307
           GKQCRERWHNHLRPDIKKDIW+EEEDK LI+AHAEIGNKWAEIAK+LPGRTENSIKNHWN
Sbjct: 241 GKQCRERWHNHLRPDIKKDIWTEEEDKILIQAHAEIGNKWAEIAKKLPGRTENSIKNHWN 300

Query: 308 ATKRRQFSKRKCRSKYPRASLLQDYIKSLNLDAAGSSKHQRKNSSNINANNKSKAATKSS 367
           ATKRRQ+SKRKCRSKYPR SLLQ+YIKSLNLD      + RK S        +     ++
Sbjct: 301 ATKRRQYSKRKCRSKYPRGSLLQEYIKSLNLDKNPPIDY-RKKSDKNANAKTNNNGKAAA 359

Query: 368 PPAAAEQDFCRSDHLVPDFDFNEVPDFDFDDKLFDENCSIDSLIEEMTCAPVVDHQKSLD 427
            P  A+Q FC +  +VP +DFNEVPDF  DD LF+E CSIDSL+++M  A  VDH+K  D
Sbjct: 360 QPQCADQ-FCPNGQIVPRYDFNEVPDFSLDDNLFEEGCSIDSLLDDMQSASTVDHEKDFD 418

Query: 428 MKV----PPLD---------------------------VPPVMEFEVKKELDLVEMISQA 456
            K+    P +D                           V   M  EVKKE DLVEM+S  
Sbjct: 419 GKIMQCAPTMDGKQSHHQVGIQCVHVVDEHHHDHETEMVAHTMGNEVKKEFDLVEMMSHM 478

Query: 457 N 457
           N
Sbjct: 479 N 479

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457011|ref|XP_002279033.1| PREDICTED: transcription factor MYB98 [Vitis vinifera] gi|297733769|emb|CBI15016.3| unnamed protein product [Vitis vinifera]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/454 (53%), Positives = 302/454 (66%), Gaps = 29/454 (6%)

Query: 9   DQAHHHASQQQPIFLSENYMKPELPFEVPSSKGTTITNNLQDFDRHHHDLDDDDGHHHLF 68
           D+ +      QP+ L ENY+K  +     S +  +     QDF  HH D        H F
Sbjct: 4   DRKYKENLGSQPMLLPENYLKSYMGDGAFSLEACSSKAFFQDF--HHLD--------HQF 53

Query: 69  VNLNGSSSTNPFSVHTSCFESLDAFPYNYSSSSNFDFYECKPFADHNYSSGNGQVMDNFQ 128
              N SS T  F V T+C +  D+F   Y S  N D YE KP+A+      N  VM+NFQ
Sbjct: 54  PT-NASSKTLQFGVQTACLDPFDSF--TYGSGMNLDVYELKPYAE------NVGVMENFQ 104

Query: 129 S---GGYLNYHQQQQVNPVDILGSDHRSHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKK 185
           S   GGYL  H  Q+    D++G D R  +  + QE+KPVNF++ +EV C++A N  YKK
Sbjct: 105 SNNGGGYL-LHHHQRAAAADMMGLD-RGRVAFNCQEIKPVNFVIPEEV-CIAAENSLYKK 161

Query: 186 AGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPG 245
             M    N A  + +KT K  KK++VVKGQWT EEDRLLI+LV+Q+G+RKWS IAQML G
Sbjct: 162 ISMSTAKNGASPAAKKTYKGRKKTHVVKGQWTIEEDRLLIQLVEQYGVRKWSLIAQMLNG 221

Query: 246 RIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNH 305
           RIGKQCRERWHNHLRP+IKKDIWSEEEDK LI+AHAEIGNKWAEIAKRLPGRTENSIKNH
Sbjct: 222 RIGKQCRERWHNHLRPNIKKDIWSEEEDKILIQAHAEIGNKWAEIAKRLPGRTENSIKNH 281

Query: 306 WNATKRRQFSKRKCRSKYPRAS-LLQDYIKSLNLDAAGSSKHQRKNSSNINANNKSKAAT 364
           WNATKRRQ S+RKCRSKYPR S LLQ+YIKSLNLD+      +   ++N  A N +    
Sbjct: 282 WNATKRRQLSRRKCRSKYPRQSTLLQNYIKSLNLDSRTVDYQKNPTANNPMAANNTVLRP 341

Query: 365 KSSPPAAAEQDFCRSDHLVPDFDFNEVPDFDFDDKLFDENCSIDSLIEEMTCAPVVDHQK 424
             + P  +  DFC  D +VP+FD+ EVPDF FD  +F ENCSIDSL+ EM+ AP  D +K
Sbjct: 342 PMNRPEIS--DFCPGDGVVPNFDYEEVPDFSFDANIFQENCSIDSLLNEMSSAPTGD-EK 398

Query: 425 SLDMKVPPLDVPPVMEFEVKKELDLVEMISQANL 458
            ++M+  PLD+  +++ EVKKE+DLVE+ISQ NL
Sbjct: 399 GIEMENMPLDMASLLQCEVKKEMDLVEIISQVNL 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540645|ref|XP_002511387.1| myb119, putative [Ricinus communis] gi|223550502|gb|EEF51989.1| myb119, putative [Ricinus communis]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/369 (63%), Positives = 279/369 (75%), Gaps = 24/369 (6%)

Query: 106 YECKPFADHNY--SSGNGQVMDNFQSGGYLNYHQQQQVNPVDILGSDH-RSHMQLDFQEM 162
           YECKP AD N   S G+GQVMDNFQ+GG+L +     ++P+D++GS+  + HM L+ QEM
Sbjct: 6   YECKPLADINNIGSGGHGQVMDNFQNGGHLLH-----LSPIDMVGSNKVQGHMSLNLQEM 60

Query: 163 KPVNFLVSDEVSCVSAGNGYY-KKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEED 221
           KP++F+V DEVS V+A N  Y K  G++KNN R   S RKT K  KK+NVVKGQWT +ED
Sbjct: 61  KPISFVVPDEVSSVTANNHEYPKNVGVNKNN-RVSASTRKTWKARKKNNVVKGQWTIDED 119

Query: 222 RLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHA 281
           RLL +LV+Q+GIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKD+WSEEEDK LI+AHA
Sbjct: 120 RLLSQLVEQYGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDVWSEEEDKVLIKAHA 179

Query: 282 EIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRASLLQDYIKSLNLD-A 340
           EIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ+SKRKCRSKYPR SLLQDYIKSLNLD  
Sbjct: 180 EIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQDYIKSLNLDPC 239

Query: 341 AGSSKHQRKNSSNINA-----NNKSKAATKSSPPAAAEQDFCRSDHLVPDFDFNEVPDFD 395
            G S +Q K+ +  +A     NN  K A  + P  A E  F ++D LVP++ FNEV DFD
Sbjct: 240 PGRSYNQGKSCATDHAIASDLNNTMKLAQNNQPQVALE--FVQNDRLVPNYVFNEVADFD 297

Query: 396 FDDK-LFDENCSIDSLIEEMTC----APVVDHQK-SLDMKVPPLDVPPVMEFEVKKELDL 449
           FD+K +F E CS DSL++ + C      VVD +   ++M V     P +M+FEVKKELDL
Sbjct: 298 FDEKIMFQEGCSFDSLLDGIPCDHHHNHVVDEKSFEINMAVEDDMTPLMMDFEVKKELDL 357

Query: 450 VEMISQANL 458
           VEMISQA +
Sbjct: 358 VEMISQAKM 366

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133554|ref|XP_002321603.1| predicted protein [Populus trichocarpa] gi|222868599|gb|EEF05730.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/398 (56%), Positives = 278/398 (69%), Gaps = 18/398 (4%)

Query: 72  NGSSSTNPFSVHT-SCFESLDAFPYNYSSSSNFDFYECKPFADHNYSSGNG---QVMDNF 127
           NGS+S   F V T S F+S DAFPY  SS  +F  YECKPF  +    G     QV ++ 
Sbjct: 38  NGSASNPFFGVQTGSNFDSFDAFPYGLSSDIDFYDYECKPFVGNINGGGGHGHGQVNEDL 97

Query: 128 QSGGYLNYHQQQQVNPVDILGSDHRSHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAG 187
           QSG YLN    Q+ NP+D +GS+ + H+ L+F+E+ PV+F+V DEVSCVSA     K+  
Sbjct: 98  QSGAYLNMSCDQR-NPIDDIGSN-QGHVSLNFEEITPVSFVVPDEVSCVSAATNECKRK- 154

Query: 188 MDKNNNRAY-HSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGR 246
           M  N  RA     RK  K  KK+++VKGQWTTEEDR+LI+LV+Q G+RKW H+AQMLPGR
Sbjct: 155 MGLNKTRALLPPARKAWKGPKKNSIVKGQWTTEEDRILIQLVEQNGVRKWCHVAQMLPGR 214

Query: 247 IGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHW 306
           IGKQCRERWHNHLRP+IKKD WS EEDK LI+AH+E+GN+WAEIAK LPGRTENSIKNHW
Sbjct: 215 IGKQCRERWHNHLRPNIKKDTWSVEEDKVLIQAHSELGNRWAEIAKMLPGRTENSIKNHW 274

Query: 307 NATKRRQFSKRKCRSKYPRASLLQDYIKSLNLDAA--GSSKHQRKNSSNINANNKSKAAT 364
           NATKR+Q+SKRKCR KYPRASLLQDYIKSLNLD+   G        S++I  +N     T
Sbjct: 275 NATKRKQYSKRKCRPKYPRASLLQDYIKSLNLDSGITGRGLGITTASTDIILDND----T 330

Query: 365 KSSPPAAAEQDFC----RSDHLVPDFDFNEVPDFDFDDKLFDENCSIDSLIEEMTCAPVV 420
           +   P    +D        D LVP++ FNEVPD+D  +K+F   CS+DS+++ + C   V
Sbjct: 331 RMKAPELLPRDLVLFKDNDDGLVPNYSFNEVPDYDIHEKIFRGGCSVDSILDGLPCDDSV 390

Query: 421 DHQKSLDMKVPPLDVPPVMEFEVKKELDLVEMISQANL 458
            H+K L+M VP  DV P M FEVKKE+DL+EMISQ+ +
Sbjct: 391 AHEKRLEMDVPEPDVTPFMGFEVKKEVDLLEMISQSKM 428

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119370|ref|XP_002318055.1| predicted protein [Populus trichocarpa] gi|222858728|gb|EEE96275.1| predicted protein [Populus trichocarpa]

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 245/472 (51%), Positives = 298/472 (63%), Gaps = 39/472 (8%)

Query: 1   MELDTKLRDQAHHHASQQQPIFLSENYMKPE--LPFEVP--SSKGTTITNNLQDFDRHHH 56
           MELD  ++ +        QP+FLS      E   PFE P  SSKG      LQ F     
Sbjct: 1   MELDNNVKKEK----PVSQPMFLSSKACIEEEYFPFETPCPSSKGF-----LQGFSHL-- 49

Query: 57  DLDDDDGHHHLFVNLNGSSSTNPFSVHT-SCFESLDAFPYNYSSSSNFDFYECKPFADHN 115
              DD G      N NGSSS   F V T S F+S DAFPY  SS+ +   YECKPFA + 
Sbjct: 50  ---DDHG------NANGSSSNPLFGVQTGSNFDSFDAFPYGPSSNIDLYDYECKPFAGNI 100

Query: 116 YSSGNG-QVMDNFQSGGYLNYHQQQQVNPVDILGSDHRSHMQLDFQEMKPVNFLVSDEVS 174
              G   QV D+FQSGGY N   Q+  N +D +GS+ + +  L F+E KPV+F+V DEVS
Sbjct: 101 NGGGGHGQVNDSFQSGGYSNLSSQR--NSIDEIGSN-QGYTSLSFEEAKPVSFVVQDEVS 157

Query: 175 CV-SAGNGYYKKAGMDKNNNRAYHS-VRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFG 232
           CV +A N    K G+  N  R      RKT K  KK++VVKGQWTTEEDRLLI LV+Q G
Sbjct: 158 CVGTAENECKNKMGL--NMTRTLQPFARKTWKGRKKNSVVKGQWTTEEDRLLIHLVEQHG 215

Query: 233 IRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAK 292
           +RKWS +A+ML GRIGKQCRERWHNHLRPDIKKD WS EEDK LI+AH+ +GN+WAEIAK
Sbjct: 216 VRKWSDVAKMLSGRIGKQCRERWHNHLRPDIKKDAWSVEEDKILIQAHSVLGNRWAEIAK 275

Query: 293 RLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRASLLQDYIKSLNLDAAGSSKHQRKNSS 352
            LPGRTENSIKNHWNATKR+Q+SKRKCR KYPRASLLQDYIKSLNL++  + K     ++
Sbjct: 276 SLPGRTENSIKNHWNATKRKQYSKRKCRPKYPRASLLQDYIKSLNLNSGTTWKDHGITTA 335

Query: 353 NINANNKSKAATKSSPPAAAEQDFC----RSDHLVPDFDFNEVPDFD-FDDKLFDENCSI 407
           +  A+           P    +D          LVP + F+EVPDFD   +K+F   CS+
Sbjct: 336 STAADVIPDNTANMKAPEQQPRDLVLFKDNDGGLVPCYSFSEVPDFDNIQEKMFQGGCSV 395

Query: 408 DSLIEEMTCAPVVDHQKSLDMKVPPLD-VPPVMEFEVKKELDLVEMISQANL 458
           DS+++ + C     H+K L MKVP  D   P M FEVKKE+DLVEMISQ+ +
Sbjct: 396 DSILDGLPCDHSSVHEKRLQMKVPEQDYATPFMGFEVKKEVDLVEMISQSKM 447

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461941|ref|XP_003601252.1| Myb [Medicago truncatula] gi|355490300|gb|AES71503.1| Myb [Medicago truncatula]

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 226/449 (50%), Positives = 290/449 (64%), Gaps = 40/449 (8%)

Query: 19  QPIFLSENY-MKPEL-----PFEV-PSSKGTTITNNLQDFDRHHHDLDDDDGHHHLFVNL 71
           Q  FL ENY +K  +     PF V PSS G       QDF+            H    N+
Sbjct: 4   QTNFLQENYHLKSNIKNYENPFGVVPSSHGF-----FQDFN------------HIDKFNV 46

Query: 72  NGSSSTNPFSVHTSCFESLDAFPYNYSSSSNFDFYECKPFADHNYSSGNGQVMDNF-QSG 130
           N S+  NP S     F+  D F Y+         +  K FA++N  +GN  VMDNF   G
Sbjct: 47  NSSTFFNPVS-GVKNFDLSDNFTYDVH-------HNFKSFAENNSGNGNAYVMDNFLYGG 98

Query: 131 GY-LNYHQQQQVNPVDILGSDHRSHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMD 189
           GY LN +  Q+ N ++++ ++         QE KP+N +V DEVSC+S+ N YYK+ GM+
Sbjct: 99  GYDLNNNLSQRNNQMEMMVTNQNYFPFNISQETKPLNSVVPDEVSCISSVN-YYKRVGMN 157

Query: 190 KNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGK 249
           +NN    ++ RK  K+ KK N +KGQWT EEDRLL++LV + G+RKWSHIA+ LPGRIGK
Sbjct: 158 RNNKAYPYASRKPEKVKKKINFIKGQWTVEEDRLLVQLVGEHGLRKWSHIAENLPGRIGK 217

Query: 250 QCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNAT 309
           QCRERWHNHL+PDIKKDIWSEEED  LI+AH EIGNKWAEIAKRLPGRTENSIKNHWNAT
Sbjct: 218 QCRERWHNHLKPDIKKDIWSEEEDNILIKAHEEIGNKWAEIAKRLPGRTENSIKNHWNAT 277

Query: 310 KRRQFSKRKCRSKYPRASLLQDYIKSLNLDAAGSSKHQRKNSSNINANNKSKAATKSSPP 369
           KRRQ+SKRK RSKYP+ +LLQ YIKSLNLD      ++RK S+N   N  +++ T SS  
Sbjct: 278 KRRQYSKRKGRSKYPKGTLLQKYIKSLNLDENPPKDYRRKPSANAIKNKTNRSTTISSQS 337

Query: 370 AAAEQDFCRSDHLVPDFDFNEVPDFDFDDKLFDENCSIDSLIEEMTCAP---VVDHQKSL 426
              EQ F     LVP  DF++VPDF FD+ LF   CSIDSL+++M CA    +++ +K  
Sbjct: 338 QQTEQFFPNDQCLVPTCDFDDVPDFSFDENLFQNGCSIDSLLDDMQCAEADQIMEGKKHF 397

Query: 427 DMKVP-PLDV-PPVMEFEVKKELDLVEMI 453
           D++   PLD+   ++  EVKKE+DL+EM+
Sbjct: 398 DVETEMPLDIMESMLGVEVKKEMDLMEMV 426

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477646|ref|XP_004155080.1| PREDICTED: transcription factor MYB98-like [Cucumis sativus]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/331 (60%), Positives = 245/331 (74%), Gaps = 28/331 (8%)

Query: 154 HMQLDFQEMKPVNFLVSDEVSCV-SAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVV 212
           ++ L+F E+KPVNF+V DEVS + SA NG+ +K G+  N N  + S+ +T K  KK NV+
Sbjct: 9   NIPLNFPEIKPVNFMVPDEVSSIDSARNGHIQK-GIINNKNVNFSSLLRTSKGRKKPNVI 67

Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEE 272
           KGQWT EEDRLLI+LV+Q+G+RKWSHIA+MLPGRIGKQCRERWHNHLRPDIKKD WSEEE
Sbjct: 68  KGQWTVEEDRLLIQLVEQYGVRKWSHIARMLPGRIGKQCRERWHNHLRPDIKKDTWSEEE 127

Query: 273 DKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRASLLQDY 332
           D+ LIEAH+EIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ+SKRKCRSKYPR SLLQDY
Sbjct: 128 DRVLIEAHSEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRCSLLQDY 187

Query: 333 IKSLNLDAAGSSKHQRKN----SSNINANNKSKAATKSSPPAAAEQDFCRSDHLVPDFDF 388
           IKSLNLD+  + +HQ+K+    SS +N NNKSK+A +         DFC +D  VPDFDF
Sbjct: 188 IKSLNLDSNTAVRHQKKSSAAISSAVNNNNKSKSADQHYHHQVQTTDFCPNDWTVPDFDF 247

Query: 389 NEVPDFDFDDKLFDENCSIDSLIEEMTCAPVVD------------HQKSLDMKVPPLD-- 434
            E P+F  DD  F E CSI+SL+E++  A V +            + +S++++   ++  
Sbjct: 248 KEEPEFYLDDSFFPEGCSINSLMEDIVGASVDEANNYDRKRYNDNNDESVELRCVEMNKL 307

Query: 435 --VPPV------MEFEVKKELDLVEMISQAN 457
               PV      MEFEVKKELDLVEM++Q N
Sbjct: 308 QYYAPVSTAVAGMEFEVKKELDLVEMMTQVN 338

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441015|ref|XP_004138279.1| PREDICTED: transcription factor MYB98-like [Cucumis sativus]

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/331 (60%), Positives = 244/331 (73%), Gaps = 28/331 (8%)

Query: 154 HMQLDFQEMKPVNFLVSDEVSCV-SAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVV 212
           ++ L+F E+KPVNF+V DEVS + SA NG+ +K G+  N N  + S+ +T K  KK NV+
Sbjct: 9   NIPLNFPEIKPVNFMVPDEVSSIDSARNGHIQK-GIINNKNVNFSSLLRTSKGRKKPNVI 67

Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEE 272
           KGQWT EEDRLLI+LV+Q+G+RKWSHIA+MLPGRIGKQCRERWHNHLRPDIKKD WSEEE
Sbjct: 68  KGQWTVEEDRLLIQLVEQYGVRKWSHIARMLPGRIGKQCRERWHNHLRPDIKKDTWSEEE 127

Query: 273 DKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRASLLQDY 332
           D+ LIEAH+EIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ+SKRKCRSKYPR SLLQDY
Sbjct: 128 DRVLIEAHSEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRCSLLQDY 187

Query: 333 IKSLNLDAAGSSKHQRKN----SSNINANNKSKAATKSSPPAAAEQDFCRSDHLVPDFDF 388
           IKSLNLD+  + +HQ+K+    SS +N NNKSK+A           DFC +D  VPDFDF
Sbjct: 188 IKSLNLDSNTAVRHQKKSSAAISSAVNNNNKSKSADHHYHHQVQTTDFCPNDWTVPDFDF 247

Query: 389 NEVPDFDFDDKLFDENCSIDSLIEEMTCAPVVD------------HQKSLDMKVPPLD-- 434
            E P+F  DD  F E CSI+SL+E++  A V +            + +S++++   ++  
Sbjct: 248 KEEPEFYLDDSFFPEGCSINSLMEDIVGASVDEANNYDRKRYNDNNDESVELRCVEMNKL 307

Query: 435 --VPPV------MEFEVKKELDLVEMISQAN 457
               PV      MEFEVKKELDLVEM++Q N
Sbjct: 308 QYYAPVSTAVAGMEFEVKKELDLVEMMTQVN 338

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133778|ref|XP_002327678.1| predicted protein [Populus trichocarpa] gi|222836763|gb|EEE75156.1| predicted protein [Populus trichocarpa]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 226/442 (51%), Positives = 284/442 (64%), Gaps = 46/442 (10%)

Query: 22  FLSENYMKPEL-PFEVPSSKGTTITNNLQDFDRHHHDLDDDDGHHHLFVNLNGSSSTNPF 80
           +L + YMK  + P E PS+K       LQDF+     LD    +  LF  L GS+S    
Sbjct: 7   YLRKPYMKEYVFPCETPSAKSF-----LQDFNH----LDQLHANRSLFGVLTGSNS---- 53

Query: 81  SVHTSCFESLDAFPYNYSSSSNFDFYEC--KPFADHNYSSGNGQV-MDNFQSGGYLNYHQ 137
                  +SLD FPY  S +++   YEC  KP+ ++N    NG    DNFQSGG LN  Q
Sbjct: 54  -------DSLDVFPYRLSPATHL--YECDYKPYTNNN----NGLYGRDNFQSGGCLNLPQ 100

Query: 138 QQQVNPVDILGSDHRSHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYH 197
           +   N +D++G + +SHM LD QE KP+N  V D   C +    YY K G+ KN+     
Sbjct: 101 E---NLIDMIGPN-QSHMSLDLQETKPMNVEVLDGTPCATTKYDYYTKGGLYKND-AILP 155

Query: 198 SVRKTMKIGKKS--NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERW 255
             R+T K  KK   N+VKGQWT EED LLIRLVD+FGIRKWSHIAQ+ PGRIGKQCRERW
Sbjct: 156 LTRRTGKTPKKEPINLVKGQWTAEEDSLLIRLVDEFGIRKWSHIAQIFPGRIGKQCRERW 215

Query: 256 HNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ-- 313
           HNHLRPDIKKDIWSEEED+ LI+AH EIGNKWAEIAK LPGRTENSIKNHWNATKRRQ  
Sbjct: 216 HNHLRPDIKKDIWSEEEDRVLIQAHKEIGNKWAEIAKSLPGRTENSIKNHWNATKRRQTC 275

Query: 314 FSKRKCRSKYPRASLLQDYIKSLNLDAAGSSKHQRKNSSNINANNKSKAATKSSPPAAAE 373
            SKRK RSKYP+ SLLQ+YIKSLNLD+    K +++        +    ++ +    + E
Sbjct: 276 TSKRKSRSKYPKGSLLQEYIKSLNLDSIPKVKRRQRRRRTAKYPDAVLGSSTTMKEPSDE 335

Query: 374 Q-----DFCR-SDHLVPDFDFNEVPDFDFDDKLFDENCSIDSLIEEMTCAPVVDHQKSLD 427
           Q     + C  +D  V  +DF+E+PDFDFD+ +F + CSIDSL++E+ C PVV ++K L 
Sbjct: 336 QPQQDLNLCENNDGPVLHYDFDEIPDFDFDETIFQDVCSIDSLLDEIDCDPVV-NEKVLA 394

Query: 428 MKVPPLDVPPVMEFEVKKELDL 449
           M+VP  D  P  +FE+  E+DL
Sbjct: 395 MEVPRADEIPFQDFEMMDEVDL 416

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
TAIR|locus:2124162	427	MYB98 "myb domain protein 98"	0.855	0.918	0.448	2.9e-80
TAIR|locus:2829519	437	MYB118 "myb domain protein 118	0.526	0.551	0.436	6.7e-49
TAIR|locus:2154543	430	MYB119 "myb domain protein 119	0.292	0.311	0.655	6e-48
TAIR|locus:2184906	423	MYB64 "myb domain protein 64"	0.246	0.267	0.745	2.9e-46
TAIR|locus:2170583	359	MYB115 "myb domain protein 115	0.290	0.370	0.602	1.5e-42
ZFIN|ZDB-GENE-991110-14	641	cmyb "transcription factor cmy	0.224	0.160	0.621	2.5e-37
UNIPROTKB|F1PQL9	629	MYBL1 "Uncharacterized protein	0.253	0.184	0.584	2.2e-36
TAIR|locus:2083599	510	MYB3R-3 "myb domain protein 3r	0.272	0.245	0.542	2.7e-36
UNIPROTKB|E9PJT2	326	MYB "Transcriptional activator	0.327	0.460	0.466	2.7e-36
UNIPROTKB|E9PMQ0	299	MYB "Transcriptional activator	0.327	0.501	0.466	2.7e-36

TAIR|locus:2124162 MYB98 "myb domain protein 98" [Arabidopsis thaliana (taxid:3702)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 191/426 (44%), Positives = 244/426 (57%)

Query:    15 ASQQQPIFL-SENYMKPE-LPFEV-PSSKGTTITNNLQXXXXXXXXXXXXXXXXXLFVNL 71
             AS  Q IF   + +MK E  PFEV   SK T+   +                        
Sbjct:    11 ASLNQNIFTRDQEHMKEEDFPFEVVDQSKPTSFLQDFHHLDHDHQFDHHHH--------- 61

Query:    72 NGSSSTNPF-SVHT--SCFESLDAFPXXXXXXXXFDFYECKP-FADHNYSSG--NGQVMD 125
             +GSSS++P  SV T  SC  +   F          DFYE KP   +H++     N     
Sbjct:    62 HGSSSSHPLLSVQTTSSCINNAP-FEHCSYQENMVDFYETKPNLMNHHHFQAVENSYFTR 120

Query:   126 NFQSGGYLNYHQQQQVNPVDILGSDHRSHMQLDF-----QEMKPVNFLVSDEVSCVSAGN 180
             N      +N   +   +P+D+  ++      + F     +  KP+NF++ DE+SCVSA N
Sbjct:   121 NHHHHQEINLVDEHD-DPMDLEQNNMMMMRMIPFDYPPTETFKPMNFVMPDEISCVSADN 179

Query:   181 GYYKKAGMDKNN---NR--AYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRK 235
               Y+    +K      R  +  S   + K  KKS +VKGQWT EEDR+LI+LV+++G+RK
Sbjct:   180 DCYRATSFNKTKPFLTRKLSSSSSSSSWKETKKSTLVKGQWTAEEDRVLIQLVEKYGLRK 239

Query:   236 WSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLP 295
             WSHIAQ+LPGRIGKQCRERWHNHLRPDIKK+ WSEEED+ LIE H EIGNKWAEIAKRLP
Sbjct:   240 WSHIAQVLPGRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLP 299

Query:   296 GRTENSIKNHWNATKRRQFSKRKCRSKYPRASLLQDYIKSLNLDAAGSSKHQRXXXXXXX 355
             GRTENSIKNHWNATKRRQFSKRKCRSKYPR SLLQDYIKSLN+ A  +S           
Sbjct:   300 GRTENSIKNHWNATKRRQFSKRKCRSKYPRPSLLQDYIKSLNMGALMASSVP-ARGRRRE 358

Query:   356 XXXXXXXXXXXXXXXXXEQDFCRSDHLVPDFDFNEVPDFDFDDKLFDENCSIDSLIEEMT 415
                              E++    D +VP+  F +  DF F++KL +E CSIDSL++++ 
Sbjct:   359 SNNKKKDVVVAVEEKKKEEEVYGQDRIVPECVFTD--DFGFNEKLLEEGCSIDSLLDDIP 416

Query:   416 CAPVVD 421
               P +D
Sbjct:   417 -QPDID 421

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0010183 "pollen tube guidance" evidence=IMP

GO:0045697 "regulation of synergid differentiation" evidence=IMP

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2829519 MYB118 "myb domain protein 118" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 113/259 (43%), Positives = 159/259 (61%)

Query:    86 CFESLDA-FPXXXXXXXXFDF-YECKPFADHNYS--SGNGQVMDNFQSGGYLNYHQQQQV 141
             C E+ +A F         F   Y   P  + N S  S +  + +N Q+ G++ +  +  +
Sbjct:    68 CTEAFEACFHGTSNDHVFFGMAYTTPPTIEPNVSHVSHDNTMWENDQNQGFI-FGTESTL 126

Query:   142 NPVDILGSDHRSHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRK 201
             N    +   ++ +M       KP+     D +      N    K    K  N+ +  +R+
Sbjct:   127 NQA--MADSNQFNMP------KPLLSANEDTIMNRRQNNQVMIKTEQIKKKNKRFQ-MRR 177

Query:   202 TMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRP 261
               K  KK++++KGQWT EED+LL++LVD  G +KWS IA+ML GR+GKQCRERWHNHLRP
Sbjct:   178 ICKPTKKASIIKGQWTPEEDKLLVQLVDLHGTKKWSQIAKMLQGRVGKQCRERWHNHLRP 237

Query:   262 DIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKR-KCR 320
             DIKKD W+EEED  LI+AH EIGN+WAEIA++LPGRTEN+IKNHWNATKRRQ S+R K +
Sbjct:   238 DIKKDGWTEEEDIILIKAHKEIGNRWAEIARKLPGRTENTIKNHWNATKRRQHSRRTKGK 297

Query:   321 SKYPRA---SLLQDYIKSL 336
              +   +   + LQ+YI+S+
Sbjct:   298 DEISLSLGSNTLQNYIRSV 316

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2154543 MYB119 "myb domain protein 119" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
 Identities = 97/148 (65%), Positives = 109/148 (73%)

Query:   202 TMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRP 261
             T K   K N++KGQWT EEDR LIRLV Q G RKW+ I++ L GR GKQCRERWHNHLRP
Sbjct:    95 TKKRSSK-NLIKGQWTAEEDRKLIRLVRQHGERKWAMISEKLEGRAGKQCRERWHNHLRP 153

Query:   262 DIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKC-- 319
             DIKKD WSEEE++ L+E+H  IGNKWAEIAK +PGRTENSIKNHWNATKRRQ SKRK   
Sbjct:   154 DIKKDGWSEEEERVLVESHMRIGNKWAEIAKLIPGRTENSIKNHWNATKRRQNSKRKHKR 213

Query:   320 --------RSKYPRAS---LLQDYIKSL 336
                     R   P A    +LQDYIKS+
Sbjct:   214 ESNADNNDRDASPSAKRPCILQDYIKSI 241

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2184906 MYB64 "myb domain protein 64" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
 Identities = 85/114 (74%), Positives = 96/114 (84%)

Query:   210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWS 269
             N++KGQWT +EDR LI+LV Q G RKW+ I++ L GR GKQCRERWHNHLRPDIKKD WS
Sbjct:   102 NIIKGQWTADEDRKLIKLVMQHGERKWAVISEKLEGRAGKQCRERWHNHLRPDIKKDSWS 161

Query:   270 EEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKC-RSK 322
             EEE++ L+EAH  IGNKWAEIAK + GRTENSIKNHWNATKRRQ SKRK  RSK
Sbjct:   162 EEEERLLVEAHTRIGNKWAEIAKLIQGRTENSIKNHWNATKRRQNSKRKHKRSK 215

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2170583 MYB115 "myb domain protein 115" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 82/136 (60%), Positives = 104/136 (76%)

Query:   207 KKSNVV-KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKK 265
             KK +++ KGQWT  ED LL+R+V   G + W+ IA+M  GR+GKQCRERWHNHLRP+IKK
Sbjct:   151 KKKDIIGKGQWTPTEDELLVRMVKSKGTKNWTSIAKMFQGRVGKQCRERWHNHLRPNIKK 210

Query:   266 DIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKY-- 323
             + WSEEED+ LIE H  +GNKW EIAKRLPGR+EN +KNHWNATKRR  S R  RS    
Sbjct:   211 NDWSEEEDQILIEVHKIVGNKWTEIAKRLPGRSENIVKNHWNATKRRLHSVRTKRSDAFS 270

Query:   324 PRASLLQDYIKSLNLD 339
             PR + L++YI+S+ ++
Sbjct:   271 PRNNALENYIRSITIN 286

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

ZFIN|ZDB-GENE-991110-14 cmyb "transcription factor cmyb" [Danio rerio (taxid:7955)]

 Score = 388 (141.6 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
 Identities = 64/103 (62%), Positives = 86/103 (83%)

Query:   211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
             ++KG WT EED+ +I LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK  W+E
Sbjct:    90 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 149

Query:   271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
             EED+ + +AH ++GN+WAEIAK LPGRT+N+IKNHWN+T RR+
Sbjct:   150 EEDQIIYQAHEKLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009790 "embryo development" evidence=IGI;IMP

GO:0001654 "eye development" evidence=IMP

GO:0060216 "definitive hemopoiesis" evidence=IMP

GO:0035701 "hematopoietic stem cell migration" evidence=IGI

UNIPROTKB|F1PQL9 MYBL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 396 (144.5 bits), Expect = 2.2e-36, P = 2.2e-36
 Identities = 73/125 (58%), Positives = 92/125 (73%)

Query:   211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
             ++KG WT EED+ +I LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK  W+E
Sbjct:    82 LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTE 141

Query:   271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRASLLQ 330
             EED+ + EAH  +GN+WAEIAK LPGRT+NSIKNHWN+T RR         K  +   LQ
Sbjct:   142 EEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRR---------KVEQEGYLQ 192

Query:   331 DYIKS 335
             D IKS
Sbjct:   193 DGIKS 197

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

TAIR|locus:2083599 MYB3R-3 "myb domain protein 3r-3" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 70/129 (54%), Positives = 93/129 (72%)

Query:   185 KAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP 244
             K+  D+   +  H  +K +      +++KG WT EED  ++ LV+++G  KWS IAQ LP
Sbjct:   111 KSFPDRTEVQCLHRWQKVLN----PDLIKGPWTHEEDEKIVELVEKYGPAKWSIIAQSLP 166

Query:   245 GRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKN 304
             GRIGKQCRERWHNHL PDI KD W+ EE+ AL+ AH   GNKWAEIAK LPGRT+N+IKN
Sbjct:   167 GRIGKQCRERWHNHLNPDINKDAWTTEEEVALMNAHRSHGNKWAEIAKVLPGRTDNAIKN 226

Query:   305 HWNATKRRQ 313
             HWN++ +++
Sbjct:   227 HWNSSLKKK 235

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|E9PJT2 MYB "Transcriptional activator Myb" [Homo sapiens (taxid:9606)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 70/150 (46%), Positives = 99/150 (66%)

Query:   178 AGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWS 237
             +G  +  K    +  NR     +   +      ++KG WT EED+ +I LV ++G ++WS
Sbjct:    33 SGKRHLGKTRWTREENRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWS 92

Query:   238 HIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGR 297
              IA+ L GRIGKQCRERWHNHL P++KK  W+EEED+ + +AH  +GN+WAEIAK LPGR
Sbjct:    93 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGR 152

Query:   298 TENSIKNHWNATKRRQFSKRKCRSKYPRAS 327
             T+N+IKNHWN+T RR+  +     +  +AS
Sbjct:   153 TDNAIKNHWNSTMRRKVEQEGYLQESSKAS 182

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E9PMQ0 MYB "Transcriptional activator Myb" [Homo sapiens (taxid:9606)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 70/150 (46%), Positives = 99/150 (66%)

Query:   178 AGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWS 237
             +G  +  K    +  NR     +   +      ++KG WT EED+ +I LV ++G ++WS
Sbjct:    33 SGKRHLGKTRWTREENRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWS 92

Query:   238 HIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGR 297
              IA+ L GRIGKQCRERWHNHL P++KK  W+EEED+ + +AH  +GN+WAEIAK LPGR
Sbjct:    93 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGR 152

Query:   298 TENSIKNHWNATKRRQFSKRKCRSKYPRAS 327
             T+N+IKNHWN+T RR+  +     +  +AS
Sbjct:   153 TDNAIKNHWNSTMRRKVEQEGYLQESSKAS 182

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S7L2	MYB98_ARATH	No assigned EC number	0.5136	0.6593	0.7072	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	458
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	2e-24
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	3e-22
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	5e-21
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	8e-17
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	1e-16
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	3e-15
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-14
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	4e-14
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	3e-13
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	9e-13
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-09
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	8e-05
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	1e-04
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	0.004

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  105 bits (262), Expect = 2e-24
 Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 26/186 (13%)

Query: 208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP-GRIGKQCRERWHNHLRPDIKKD 266
           K  + KG W+ EED  L+R + ++G   WS + +     R GK CR RW N+LRPD+K+ 
Sbjct: 9   KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG 68

Query: 267 IWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKR--------- 317
            +S++E+  +IE HA +GN+W++IA +LPGRT+N IKN WN+  +++  +R         
Sbjct: 69  TFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKP 128

Query: 318 -----KCRSKYPRASLLQD-----------YIKSLNLDAAGSSKHQRKNSSNINANNKSK 361
                    K P      D            +K+ N     + + +R +S +        
Sbjct: 129 LSEVENGEDKNPPTDDKSDKASSVVSNELNLLKADNSKPLAALQEKRSSSISPAGYQLEV 188

Query: 362 AATKSS 367
            ++ SS
Sbjct: 189 ESSSSS 194

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score = 95.1 bits (236), Expect = 3e-22
 Identities = 45/121 (37%), Positives = 73/121 (60%), Gaps = 5/121 (4%)

Query: 200 RKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHI---AQMLPGRIGKQCRERWH 256
           +KT     K  + +G WT EED +L+  + + G  +W  +   A +L  R GK CR RW 
Sbjct: 12  KKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLL--RCGKSCRLRWM 69

Query: 257 NHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSK 316
           N+LRP +K+   + +E+  ++  H  +GN+W+ IA R+PGRT+N IKN+WN   R++  +
Sbjct: 70  NYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLR 129

Query: 317 R 317
           +
Sbjct: 130 Q 130

Length = 249

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 95.2 bits (237), Expect = 5e-21
 Identities = 39/112 (34%), Positives = 53/112 (47%)

Query: 201 KTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLR 260
           +      ++    G W   ED  L  LV + G   WS +A +L    GKQ   RW+NHL 
Sbjct: 8   ELQIKLMQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLN 67

Query: 261 PDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312
           P +KK  WSEEED+ LI+   E+G +W+ IA     RT       +  T   
Sbjct: 68  PQLKKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLED 119

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 73.7 bits (182), Expect = 8e-17
 Identities = 25/47 (53%), Positives = 31/47 (65%)

Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHL 259
           +G WT EED LLI  V + G   WS IA+ LPGR   QC+ RW+N+L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 73.9 bits (182), Expect = 1e-16
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 216 WTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKA 275
           WT EED  L++LV+++G   W  IA+ L GR    CR+RW   LRP   +  W++EED+ 
Sbjct: 1   WTEEEDEKLLKLVEKYG-NDWKQIAEEL-GRTPSACRDRWRRKLRPKRSRGPWTKEEDQR 58

Query: 276 L 276
           L
Sbjct: 59  L 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 69.2 bits (170), Expect = 3e-15
 Identities = 29/49 (59%), Positives = 35/49 (71%)

Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRP 261
           KG+WT EED LLI LV ++G   W  IA+ LPGR  +QCRERW N L+P
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 67.2 bits (165), Expect = 1e-14
 Identities = 25/44 (56%), Positives = 29/44 (65%)

Query: 216 WTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHL 259
           WT EED LL+  V ++G   W  IA+ LPGR  KQCRERW N L
Sbjct: 2   WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 66.0 bits (162), Expect = 4e-14
 Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 265 KDIWSEEEDKALIEAHAEIGNK-WAEIAKRLPGRTENSIKNHWN 307
           +  W+ EED+ LIEA  + GN  W++IAK LPGRT+N  KN WN
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWN 44

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 63.4 bits (155), Expect = 3e-13
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 265 KDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRR 312
           K  W+EEED+ LIE   + G N W +IAK LPGRT    +  W    + 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 62.2 bits (152), Expect = 9e-13
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 268 WSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATK 310
           W+EEED+ L+EA  + G N W +IAK LPGRT    +  W    
Sbjct: 2   WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 268 WSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKC 319
           W+EEED+ L++   + GN W +IA+ L GRT ++ ++ W    R + S+   
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRSRGPW 51

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 216 WTTEEDRLLIRLVDQFGIRKWSHIAQ---MLPGRIGKQCRERWHN 257
           WT EED  L+  V+++G+  W+ I +    +  R     +++W N
Sbjct: 3   WTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRN 47

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 261 PDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRT 298
           P IKK  W+ EED+ L+     +  +W  IA  + GRT
Sbjct: 1   PSIKKTEWTREEDEKLLHLAKLLPTQWRTIAP-IVGRT 37

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 268 WSEEEDKALIEA--HAEIGNKWAEIAKRLP---GRTENSIKNHW 306
           W++EED+AL+E      +GN WA+I K       RT   +K+ W
Sbjct: 3   WTDEEDEALVEGVEKYGVGN-WAKILKDYFFVNNRTSVDLKDKW 45

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	458
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.97
PLN03212	249	Transcription repressor MYB5; Provisional	99.97
PLN03091	459	hypothetical protein; Provisional	99.96
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.88
PLN03212	249	Transcription repressor MYB5; Provisional	99.87
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.86
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.85
PLN03091	459	hypothetical protein; Provisional	99.84
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.6
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.58
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.49
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.46
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.45
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.32
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.32
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.28
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.13
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.11
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.03
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.97
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.89
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.81
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.33
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.3
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.25
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.21
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.2
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.18
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.81
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.48
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.4
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.4
PRK13923	170	putative spore coat protein regulator protein YlbO	96.33
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.84
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	95.74
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.69
KOG1279	506	consensus Chromatin remodeling factor subunit and	95.66
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.51
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.48
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.28
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.96
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.28
PRK13923	170	putative spore coat protein regulator protein YlbO	93.98
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	93.86
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	92.35
KOG2656	445	consensus DNA methyltransferase 1-associated prote	91.54
KOG4282	345	consensus Transcription factor GT-2 and related pr	90.74
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	90.38
KOG1194	534	consensus Predicted DNA-binding protein, contains	88.68
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	85.8
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	84.94
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	83.64
KOG2656	445	consensus DNA methyltransferase 1-associated prote	82.47
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	80.55

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.97  E-value=3.8e-31  Score=257.54  Aligned_cols=111  Identities=44%  Similarity=0.835  Sum_probs=105.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCC-CCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCc
Q 046859          208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP-GRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNK  286 (458)
Q Consensus       208 kp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp-gRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~k  286 (458)
                      ++.+.||+||+|||++|+++|++||.++|..||+.++ +|++++||.||.+||+|.++++.||+|||.+|+++|+.+|++
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr   83 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR   83 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence            4556689999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHhHhhhhhhc
Q 046859          287 WAEIAKRLPGRTENSIKNHWNATKRRQFSKRK  318 (458)
Q Consensus       287 Ws~IAk~lpgRT~~qcKnRw~~l~rr~~sk~k  318 (458)
                      |+.||++|||||+++|||+|+..++|+..+..
T Consensus        84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999988876543

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.97  E-value=2.3e-30  Score=250.94  Aligned_cols=110  Identities=37%  Similarity=0.782  Sum_probs=104.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccC-CCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCc
Q 046859          208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQML-PGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNK  286 (458)
Q Consensus       208 kp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~L-pgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~k  286 (458)
                      ++.+++++||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.++|+|.+++++||+|||++|+++|.+||++
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnK   99 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR   99 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcccc
Confidence            478999999999999999999999988999999988 5999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHhHhhhhhh
Q 046859          287 WAEIAKRLPGRTENSIKNHWNATKRRQFSKR  317 (458)
Q Consensus       287 Ws~IAk~lpgRT~~qcKnRw~~l~rr~~sk~  317 (458)
                      |+.||+.|||||+++|||||+.++|+...+.
T Consensus       100 Ws~IAk~LpGRTDnqIKNRWns~LrK~l~r~  130 (249)
T PLN03212        100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ  130 (249)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhHHHHhc
Confidence            9999999999999999999999998876543

>PLN03091 hypothetical protein; Provisional

Probab=99.96  E-value=6.4e-29  Score=256.22  Aligned_cols=111  Identities=43%  Similarity=0.872  Sum_probs=105.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCC-CCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCC
Q 046859          207 KKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP-GRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGN  285 (458)
Q Consensus       207 Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp-gRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~  285 (458)
                      .+..++||+||+|||++|+++|.+||..+|..||+.++ +|+++|||+||.++|+|.+++++||+|||++|+++|++||+
T Consensus         8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn   87 (459)
T PLN03091          8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN   87 (459)
T ss_pred             cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence            45789999999999999999999999889999999885 99999999999999999999999999999999999999999


Q ss_pred             cHHHHHhhCCCCCHHHHHHHHHHHhHhhhhhh
Q 046859          286 KWAEIAKRLPGRTENSIKNHWNATKRRQFSKR  317 (458)
Q Consensus       286 kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk~  317 (458)
                      +|++||+.|||||+++|||||+.++|++++.+
T Consensus        88 KWskIAk~LPGRTDnqIKNRWnslLKKklr~~  119 (459)
T PLN03091         88 RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR  119 (459)
T ss_pred             chHHHHHhcCCCCHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999876643

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.88  E-value=9.1e-23  Score=216.55  Aligned_cols=153  Identities=27%  Similarity=0.401  Sum_probs=135.0

Q ss_pred             CCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcc
Q 046859          155 MQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIR  234 (458)
Q Consensus       155 ~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~  234 (458)
                      .-|+.||+..|..+|..    .+.+-...|+-++..+++|+..|...||-+.|.|.+++|+||++||.+|+.+|.+||.+
T Consensus       306 keWsEEed~kL~alV~~----~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~k  381 (939)
T KOG0049|consen  306 KEWSEEEDTKLIALVKI----TSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAK  381 (939)
T ss_pred             hhcchhhhHHHHHHHHH----hhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCcc
Confidence            35899999998887753    22333456666777888899999999999999999999999999999999999999999


Q ss_pred             cchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCH---HHHHHHHHHHh
Q 046859          235 KWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTE---NSIKNHWNATK  310 (458)
Q Consensus       235 nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~---~qcKnRw~~l~  310 (458)
                      .|.+|-+.+|||++.|||+||.+.|....+++.||-.||+.|+.+|.+|| ++|.+||..||+||.   ..||-|+-.+.
T Consensus       382 dw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k  461 (939)
T KOG0049|consen  382 DWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAK  461 (939)
T ss_pred             chhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999 889999999999999   44555554443


Q ss_pred             H
Q 046859          311 R  311 (458)
Q Consensus       311 r  311 (458)
                      .
T Consensus       462 ~  462 (939)
T KOG0049|consen  462 L  462 (939)
T ss_pred             H
Confidence            3

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.87  E-value=7.6e-23  Score=198.73  Aligned_cols=106  Identities=23%  Similarity=0.385  Sum_probs=90.2

Q ss_pred             CCCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 046859          153 SHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFG  232 (458)
Q Consensus       153 ~~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G  232 (458)
                      +..|||+|||+.|..+|.+    ++.  ..|..++....++|+++|||+||.++|+|.+++|+||+|||++|++++.++|
T Consensus        24 KRg~WT~EEDe~L~~lV~k----yG~--~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~G   97 (249)
T PLN03212         24 KRGPWTVEEDEILVSFIKK----EGE--GRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLG   97 (249)
T ss_pred             cCCCCCHHHHHHHHHHHHH----hCc--ccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcc
Confidence            5678999999997666554    332  2455555444568999999999999999999999999999999999999999


Q ss_pred             cccchhhhccCCCCchhhhHhhhhhhccccccc
Q 046859          233 IRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKK  265 (458)
Q Consensus       233 ~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk  265 (458)
                       ++|..||+.|||||+++||+||+.+|++.+.+
T Consensus        98 -nKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r  129 (249)
T PLN03212         98 -NRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLR  129 (249)
T ss_pred             -ccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHh
Confidence             89999999999999999999999998865443

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.86  E-value=1.6e-22  Score=197.07  Aligned_cols=103  Identities=21%  Similarity=0.333  Sum_probs=89.2

Q ss_pred             CCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCc
Q 046859          154 HMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGI  233 (458)
Q Consensus       154 ~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~  233 (458)
                      ..||+.|||..|..    +|..++.+  +|..++...+.+|++++||+||.+||+|.++||.||+|||++|++|+..+| 
T Consensus         9 kGpWt~EED~~L~~----~V~~~G~~--~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~G-   81 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIR----SIKSFGKH--NGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLG-   81 (238)
T ss_pred             CCCCChHHHHHHHH----HHHHhCCC--CcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHC-
Confidence            48999999999544    45566544  665555555558999999999999999999999999999999999999999 


Q ss_pred             ccchhhhccCCCCchhhhHhhhhhhccccc
Q 046859          234 RKWSHIAQMLPGRIGKQCRERWHNHLRPDI  263 (458)
Q Consensus       234 ~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~i  263 (458)
                      ++|+.||++|||||++.++++|+.+|++.+
T Consensus        82 NrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl  111 (238)
T KOG0048|consen   82 NRWSLIAGRLPGRTDNEVKNHWNTHLKKKL  111 (238)
T ss_pred             cHHHHHHhhCCCcCHHHHHHHHHHHHHHHH
Confidence            899999999999999999999998886433

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.85  E-value=1.7e-21  Score=207.04  Aligned_cols=175  Identities=22%  Similarity=0.409  Sum_probs=152.5

Q ss_pred             CCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcc-
Q 046859          156 QLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIR-  234 (458)
Q Consensus       156 pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~-  234 (458)
                      -|+.||++.|..+-.      ..+...|..++...+.+|+..||-.+++..++ .+.+..||.|||.+|+.+|++...+ 
T Consensus       255 ~WS~EE~E~L~AiA~------A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~-~L~ekeWsEEed~kL~alV~~~~~nS  327 (939)
T KOG0049|consen  255 HWSNEEVEKLKALAE------APKFVSWPMIALNLGTNRSSYQCMEKFKTEVS-QLSEKEWSEEEDTKLIALVKITSINS  327 (939)
T ss_pred             ccChHHHHHHHHHHh------ccccccHHHHHHHhCCCcchHHHHHHHHHHHH-HHHhhhcchhhhHHHHHHHHHhhccC
Confidence            488999998766643      12345677888888888999999999998876 5556799999999999999998644 


Q ss_pred             --cchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCc-HHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859          235 --KWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNK-WAEIAKRLPGRTENSIKNHWNATKR  311 (458)
Q Consensus       235 --nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~k-Ws~IAk~lpgRT~~qcKnRw~~l~r  311 (458)
                        +|.+|-..||||+..|.-.||...|+|.+++|+||.+||.+|+.+|.+||++ |.+|...+|||++.|||.||...+.
T Consensus       328 hI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~  407 (939)
T KOG0049|consen  328 HIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLN  407 (939)
T ss_pred             ccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHH
Confidence              6999999999999999999999999999999999999999999999999976 9999999999999999999998877


Q ss_pred             hhhhhhcccCCCccchHHHHHHHHccCC
Q 046859          312 RQFSKRKCRSKYPRASLLQDYIKSLNLD  339 (458)
Q Consensus       312 r~~sk~k~~~~~p~~~~l~~~iksl~~~  339 (458)
                      +..  ++.+|.-.+..-|..+|+.+|..
T Consensus       408 ~s~--K~~rW~l~edeqL~~~V~~YG~g  433 (939)
T KOG0049|consen  408 RSA--KVERWTLVEDEQLLYAVKVYGKG  433 (939)
T ss_pred             Hhh--ccCceeecchHHHHHHHHHHccc
Confidence            644  56678888888888999988865

>PLN03091 hypothetical protein; Provisional

Probab=99.84  E-value=1e-21  Score=203.12  Aligned_cols=104  Identities=20%  Similarity=0.371  Sum_probs=89.3

Q ss_pred             CCCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 046859          153 SHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFG  232 (458)
Q Consensus       153 ~~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G  232 (458)
                      ...+|+.|||+.|..+|.+    ++.  ..|..++..+.++|+++|||+||.++|+|.+++|+||+|||++|+++++++|
T Consensus        13 rKg~WTpEEDe~L~~~V~k----yG~--~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~G   86 (459)
T PLN03091         13 RKGLWSPEEDEKLLRHITK----YGH--GCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLG   86 (459)
T ss_pred             cCCCCCHHHHHHHHHHHHH----hCc--CCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhC
Confidence            5568999999997666554    432  3555555455568999999999999999999999999999999999999999


Q ss_pred             cccchhhhccCCCCchhhhHhhhhhhccccc
Q 046859          233 IRKWSHIAQMLPGRIGKQCRERWHNHLRPDI  263 (458)
Q Consensus       233 ~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~i  263 (458)
                       .+|.+||+.||||++++||+||+.+|++.+
T Consensus        87 -nKWskIAk~LPGRTDnqIKNRWnslLKKkl  116 (459)
T PLN03091         87 -NRWSQIAAQLPGRTDNEIKNLWNSCLKKKL  116 (459)
T ss_pred             -cchHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence             899999999999999999999998887643

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.60  E-value=1.1e-15  Score=118.17  Aligned_cols=60  Identities=53%  Similarity=1.089  Sum_probs=55.1

Q ss_pred             CCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHH
Q 046859          216 WTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKAL  276 (458)
Q Consensus       216 WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~L  276 (458)
                      ||+|||++|+++|..|| .+|..||+.|+.|++.+|+.||.++|++.+++++||++||++|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 7999999999669999999999999999999999999999987

...

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.58  E-value=1.1e-14  Score=156.46  Aligned_cols=187  Identities=19%  Similarity=0.350  Sum_probs=140.4

Q ss_pred             CCCCCcccccchhhhhhhhhhhhccC---------CCcc-------hhhcccccCCCChhHHHHHHHhcCCCCC-CCCCC
Q 046859          154 HMQLDFQEMKPVNFLVSDEVSCVSAG---------NGYY-------KKAGMDKNNNRAYHSVRKTMKIGKKSNV-VKGQW  216 (458)
Q Consensus       154 ~~pwt~EEdk~l~~vv~e~V~~~s~~---------~~~~-------~~v~~~~~~~Rt~kqCR~RW~~~Lkp~l-kkG~W  216 (458)
                      ..-|+.||++.+..+|.++....+-.         -.+|       |.-.....+-|+..+....-++..+|-- .+|.|
T Consensus       308 ~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~rg~w  387 (607)
T KOG0051|consen  308 LKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKRGKW  387 (607)
T ss_pred             hhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCccccccCCC
Confidence            35688999999998888777654332         1111       1111222334777777664444445533 99999


Q ss_pred             CHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhccccc--ccCCCChHHHHHHHHHHH-------Hh----
Q 046859          217 TTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDI--KKDIWSEEEDKALIEAHA-------EI----  283 (458)
Q Consensus       217 T~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~i--kk~~WT~EED~~Llelv~-------k~----  283 (458)
                      |+||++.|..+|.++| +.|..|++.| ||.+..|++||+++....-  +++.||.||.+.|+++|.       ++    
T Consensus       388 t~ee~eeL~~l~~~~g-~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n  465 (607)
T KOG0051|consen  388 TPEEEEELKKLVVEHG-NDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQPQASN  465 (607)
T ss_pred             CcchHHHHHHHHHHhc-ccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhcccccc
Confidence            9999999999999999 8999999999 9999999999999998874  899999999999999996       33    


Q ss_pred             ---------------CCcHHHHHhhCCCCCHHHHHHHHHHHhHhhhhhhcccCCCccchHHHHHHHHccCCCCC
Q 046859          284 ---------------GNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRASLLQDYIKSLNLDAAG  342 (458)
Q Consensus       284 ---------------G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk~k~~~~~p~~~~l~~~iksl~~~~~~  342 (458)
                                     +.+|..|+..+..|+..||+.+|..++.+................|.+.+..+++....
T Consensus       466 ~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~~~~~~v~l~ErL~dl~~~e~~  539 (607)
T KOG0051|consen  466 TDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQESKGSDMVWLLERLSDLDLTEES  539 (607)
T ss_pred             cchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccccccchhHHHHHHHHhcccccCC
Confidence                           24699999999999999999999999887754433332223445666667777666433

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.49  E-value=2.2e-14  Score=152.78  Aligned_cols=173  Identities=24%  Similarity=0.379  Sum_probs=144.0

Q ss_pred             CCCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 046859          153 SHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFG  232 (458)
Q Consensus       153 ~~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G  232 (458)
                      ...+|+..||..+..++.++    +  ...|-++++.... |++++|+.||.+++.|.++++.|+.|||+.|+.+..++|
T Consensus        19 k~gsw~~~EDe~l~~~vk~l----~--~nnws~vas~~~~-~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~   91 (512)
T COG5147          19 KGGSWKRTEDEDLKALVKKL----G--PNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELG   91 (512)
T ss_pred             cCCCCCCcchhHHHHHHhhc----c--cccHHHHHHHhcc-cccccccchhhhhhchhcccccccHHHHHHHHHHHHhcC
Confidence            44589999999998888542    2  1234455555444 899999999999999999999999999999999999999


Q ss_pred             cccchhhhccCCCCchhhhHhhhhhhccccc-------------------------------------------------
Q 046859          233 IRKWSHIAQMLPGRIGKQCRERWHNHLRPDI-------------------------------------------------  263 (458)
Q Consensus       233 ~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~i-------------------------------------------------  263 (458)
                       ..|..||..+++|+..+|.+||.+.+.+..                                                 
T Consensus        92 -~~wstia~~~d~rt~~~~~ery~~~~~~~~s~~~s~~~~~~~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~  170 (512)
T COG5147          92 -TQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRRNEFDKIDPFNENSARRPDIYEDELLEREVNREASYRLRV  170 (512)
T ss_pred             -chhhhhccccCccchHHHHHHHHHHhhhhhccccccccchhhccccCchhhhhhhhhhhhhcccchhhhhHHHHHHHHc
Confidence             789999999999999999999985442210                                                 


Q ss_pred             --------------------------------------------------------------------------------
Q 046859          264 --------------------------------------------------------------------------------  263 (458)
Q Consensus       264 --------------------------------------------------------------------------------  263 (458)
                                                                                                      
T Consensus       171 ~rv~~~~vk~~~~~~~~~~~~~~~qem~~~~~~s~~~~~~~~~~~~~~k~f~~~~~~~~e~~i~~~~~~~~~sr~q~~~~  250 (512)
T COG5147         171 PRVSKADVKPREKGEENNPDIEDLQEMKELKSASITRHLILPSKSEINKAFKKGETLALEQEINEYKEKKGLSRKQFCER  250 (512)
T ss_pred             ccchHhhhhHHhhcccccccHHHHHHHhHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHHHHHHHhcccHHHHHhh
Confidence                                                                                            


Q ss_pred             ---------------------------------------ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHH
Q 046859          264 ---------------------------------------KKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKN  304 (458)
Q Consensus       264 ---------------------------------------kk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKn  304 (458)
                                                             .++.||.+|+..|..++.++|..|..|++.+ +|-++.|++
T Consensus       251 Iws~~~~~~~f~~n~~~~l~~R~~ksiy~~~rrky~~f~~~~~wt~e~~~eL~~~~~~~~~~w~~ig~~~-~rmp~~crd  329 (512)
T COG5147         251 IWSTDRDEDKFWPNIYKKLPYRDKKSIYKHLRRKYNIFEQRGKWTKEEEQELAKLVVEHGGSWTEIGKLL-GRMPNDCRD  329 (512)
T ss_pred             ccccccccccccchhhcccccccccchHHHHHHhhhHHhhhccCccccccccccccccccchhhHhhhhh-ccCcHHHHH
Confidence                                                   4567999999999999999999999999999 999999999


Q ss_pred             HHHHHhHhhhhhhcccCCCccchHHHHHHH
Q 046859          305 HWNATKRRQFSKRKCRSKYPRASLLQDYIK  334 (458)
Q Consensus       305 Rw~~l~rr~~sk~k~~~~~p~~~~l~~~ik  334 (458)
                      ||+..++...+..+.+|..++...|...+-
T Consensus       330 ~wr~~~~~g~t~~~~~ws~eee~~l~~vv~  359 (512)
T COG5147         330 RWRDYVKCGDTLKRNRWSIEEEELLDKVVN  359 (512)
T ss_pred             HHhhhccccCccCCCCCchhhhhhHHHHHH
Confidence            999999998666667777766666655554

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.46  E-value=4.5e-14  Score=150.37  Aligned_cols=107  Identities=37%  Similarity=0.657  Sum_probs=101.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHH
Q 046859          209 SNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWA  288 (458)
Q Consensus       209 p~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs  288 (458)
                      -.++.|.|+..||+.|..+|+.+|.++|++||..+.-|+++||+.||++++.|.+++..|+.|||..|+.+..++|.+|+
T Consensus        16 ~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~ws   95 (512)
T COG5147          16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWS   95 (512)
T ss_pred             ceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchhh
Confidence            35677899999999999999999999999999999889999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCHHHHHHHHHHHhHhhhh
Q 046859          289 EIAKRLPGRTENSIKNHWNATKRRQFS  315 (458)
Q Consensus       289 ~IAk~lpgRT~~qcKnRw~~l~rr~~s  315 (458)
                      .||..+++||..+|.+||..++....+
T Consensus        96 tia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          96 TIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhccccCccchHHHHHHHHHHhhhhhc
Confidence            999999999999999999988876655

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.45  E-value=6.1e-14  Score=147.21  Aligned_cols=108  Identities=32%  Similarity=0.597  Sum_probs=102.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHH
Q 046859          211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEI  290 (458)
Q Consensus       211 lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~I  290 (458)
                      ++.|.|+.-||+.|..+|.+||.+.|++|++.++..+.+||+.||..+|+|.+++..|+.|||++|+.+.......|..|
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCCHHHHHHHHHHHhHhhhhhhcc
Q 046859          291 AKRLPGRTENSIKNHWNATKRRQFSKRKC  319 (458)
Q Consensus       291 Ak~lpgRT~~qcKnRw~~l~rr~~sk~k~  319 (458)
                      |..+ |||.+||-.||+.++-...++...
T Consensus        85 a~i~-gr~~~qc~eRy~~ll~~~~s~~~~  112 (617)
T KOG0050|consen   85 ADIM-GRTSQQCLERYNNLLDVYVSYHYH  112 (617)
T ss_pred             HHHh-hhhHHHHHHHHHHHHHHHHhhhcc
Confidence            9999 999999999999999877665443

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.32  E-value=8.9e-13  Score=98.24  Aligned_cols=47  Identities=47%  Similarity=0.980  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCcccchhhhccCC-CCchhhhHhhhhhhc
Q 046859          213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP-GRIGKQCRERWHNHL  259 (458)
Q Consensus       213 kG~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp-gRt~~Qcr~RW~~~L  259 (458)
                      |++||+|||++|+++|.++|..+|..||..|| +||+.||+.||+++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            68999999999999999999666999999999 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.32  E-value=4.1e-12  Score=136.96  Aligned_cols=148  Identities=22%  Similarity=0.363  Sum_probs=117.8

Q ss_pred             CCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCC--CCCCCCHHHHHHHHHHHH----
Q 046859          156 QLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNV--VKGQWTTEEDRLLIRLVD----  229 (458)
Q Consensus       156 pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~l--kkG~WT~EED~~Ll~lV~----  229 (458)
                      .|++||++.|..++.+    +   ++.| ..+..+.. |.+..||.||+++.+++-  ++|.||.||.++|+++|+    
T Consensus       386 ~wt~ee~eeL~~l~~~----~---g~~W-~~Ig~~lg-r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~  456 (607)
T KOG0051|consen  386 KWTPEEEEELKKLVVE----H---GNDW-KEIGKALG-RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIR  456 (607)
T ss_pred             CCCcchHHHHHHHHHH----h---cccH-HHHHHHHc-cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHH
Confidence            3678999987666654    2   2344 44444443 999999999999999984  999999999999999996    


Q ss_pred             ---Hh------------------CcccchhhhccCCCCchhhhHhhhhhhc-ccccccCCCCh-HHHHHHHHHHHHhC--
Q 046859          230 ---QF------------------GIRKWSHIAQMLPGRIGKQCRERWHNHL-RPDIKKDIWSE-EEDKALIEAHAEIG--  284 (458)
Q Consensus       230 ---~~------------------G~~nW~~IA~~LpgRt~~Qcr~RW~~~L-~p~ikk~~WT~-EED~~Llelv~k~G--  284 (458)
                         ++                  -.-+|..|++.+..|+..|||-+|..++ ++..+...|.. .+...|++-+..++  
T Consensus       457 ~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~~~~~~v~l~ErL~dl~~~  536 (607)
T KOG0051|consen  457 EALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQESKGSDMVWLLERLSDLDLT  536 (607)
T ss_pred             HhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccccccchhHHHHHHHHhcccc
Confidence               22                  1126999999999999999999999877 55567777876 45566777776665  


Q ss_pred             ----CcHHHHHhhCCCCC-HHHHHHHHHHHhHh
Q 046859          285 ----NKWAEIAKRLPGRT-ENSIKNHWNATKRR  312 (458)
Q Consensus       285 ----~kWs~IAk~lpgRT-~~qcKnRw~~l~rr  312 (458)
                          ..|..|+...||.. +.+|+.+|..+...
T Consensus       537 e~~~IDW~~l~~~~~g~~~~~e~r~q~~~lk~~  569 (607)
T KOG0051|consen  537 EESPIDWKSLAEYAPGESTGEELRLQFERLKKK  569 (607)
T ss_pred             cCCccCHHHHHHhCCCCCcHHHHHHHHHhHhhc
Confidence                35999999999998 99999999988766

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.28  E-value=5e-12  Score=94.21  Aligned_cols=46  Identities=39%  Similarity=0.795  Sum_probs=41.7

Q ss_pred             cCCCChHHHHHHHHHHHHhCCc-HHHHHhhCC-CCCHHHHHHHHHHHh
Q 046859          265 KDIWSEEEDKALIEAHAEIGNK-WAEIAKRLP-GRTENSIKNHWNATK  310 (458)
Q Consensus       265 k~~WT~EED~~Llelv~k~G~k-Ws~IAk~lp-gRT~~qcKnRw~~l~  310 (458)
                      |++||+|||++|+++|.+||.. |..||..+| +||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999998764

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.13  E-value=6.7e-11  Score=91.47  Aligned_cols=46  Identities=37%  Similarity=0.752  Sum_probs=39.7

Q ss_pred             CChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859          268 WSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       268 WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~  313 (458)
                      ||+|||++|+++|.+||++|..||+.|+.||..+|++||...++..
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~   46 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPK   46 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTT
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCccc
Confidence            9999999999999999999999999996699999999999966543

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.11  E-value=1.4e-10  Score=83.61  Aligned_cols=47  Identities=47%  Similarity=0.876  Sum_probs=44.4

Q ss_pred             cCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859          265 KDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKR  311 (458)
Q Consensus       265 k~~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~r  311 (458)
                      +++||++||.+|+.++.+|| .+|..||..+++||..+|++||..+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.03  E-value=2.9e-10  Score=82.05  Aligned_cols=48  Identities=58%  Similarity=1.172  Sum_probs=45.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcc
Q 046859          213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLR  260 (458)
Q Consensus       213 kG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~  260 (458)
                      +++||++||.+|+.++..+|..+|..||..+++|++.+|+.||.++++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            468999999999999999997799999999999999999999998765

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.97  E-value=1.3e-09  Score=77.60  Aligned_cols=43  Identities=47%  Similarity=0.914  Sum_probs=41.4

Q ss_pred             CCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHH
Q 046859          267 IWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNAT  309 (458)
Q Consensus       267 ~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l  309 (458)
                      +||++|+..|++++.++| .+|..||..+++||..+|++||..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 9999999999999999999999875

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.89  E-value=1.9e-09  Score=76.62  Aligned_cols=45  Identities=56%  Similarity=1.092  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhc
Q 046859          215 QWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHL  259 (458)
Q Consensus       215 ~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L  259 (458)
                      +||++|+..|+.++..+|..+|..||..+++|++.+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999779999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.81  E-value=9.8e-10  Score=116.03  Aligned_cols=130  Identities=18%  Similarity=0.247  Sum_probs=94.3

Q ss_pred             CCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCccc
Q 046859          156 QLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRK  235 (458)
Q Consensus       156 pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~n  235 (458)
                      -|+..||+.+...|..    ++  .+-|.. ++......+++||+.||..+++|.+++.-|+.|||++|+.+..... ..
T Consensus         9 vwrntEdeilkaav~k----yg--~nqws~-i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p-~q   80 (617)
T KOG0050|consen    9 VWRNTEDEVLKAAVMK----YG--KNQWSR-IASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEP-TQ   80 (617)
T ss_pred             eecccHHHHHHHHHHH----cc--hHHHHH-HHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcC-Cc
Confidence            4777777776655544    32  123444 4444455899999999999999999999999999999999999998 89


Q ss_pred             chhhhccCCCCchhhhHhhhhhhcccccccC----------CCChHHH-HHHHHHHHHhCCcHHHHHhhC
Q 046859          236 WSHIAQMLPGRIGKQCRERWHNHLRPDIKKD----------IWSEEED-KALIEAHAEIGNKWAEIAKRL  294 (458)
Q Consensus       236 W~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~----------~WT~EED-~~Llelv~k~G~kWs~IAk~l  294 (458)
                      |..||..| ||++.||-+||.++|.....+.          -|-.|=| ..+...+.--|..|..+-..|
T Consensus        81 wrtIa~i~-gr~~~qc~eRy~~ll~~~~s~~~~~~~~~D~rLk~gE~ePn~e~~~aRpd~~dmdEde~eM  149 (617)
T KOG0050|consen   81 WRTIADIM-GRTSQQCLERYNNLLDVYVSYHYHSEPYIDAKLKEGEIEPNQETNPARPDGFDMDEDEGEM  149 (617)
T ss_pred             cchHHHHh-hhhHHHHHHHHHHHHHHHHhhhcccccccccccCCCcCCCccccccccCCcccchHHHHHH
Confidence            99999999 9999999999998874332211          2333333 334445555556666666655

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.33  E-value=0.00033  Score=73.81  Aligned_cols=51  Identities=25%  Similarity=0.496  Sum_probs=45.9

Q ss_pred             ccccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859          262 DIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRR  312 (458)
Q Consensus       262 ~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~rr  312 (458)
                      .+-...||.+|+.+|++++..|| ++|..||.+++.||..+||.+|.++.-.
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~  120 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN  120 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence            34567899999999999999999 9999999999999999999999876543

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.30  E-value=0.0015  Score=63.02  Aligned_cols=97  Identities=28%  Similarity=0.502  Sum_probs=74.7

Q ss_pred             CCCHHHHHHHHHHHHHhCcccchhhhccCC---CCchhhhHhhhhhhcc-ccc--------------------ccCCCCh
Q 046859          215 QWTTEEDRLLIRLVDQFGIRKWSHIAQMLP---GRIGKQCRERWHNHLR-PDI--------------------KKDIWSE  270 (458)
Q Consensus       215 ~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp---gRt~~Qcr~RW~~~L~-p~i--------------------kk~~WT~  270 (458)
                      +|++++|-+|+.+|..-.  .-..|+..++   .-|...+.+||+.+|. |.+                    .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            599999999999998765  6677776654   5678899999998773 222                    4678999


Q ss_pred             HHHHHHHHHHHHhC---CcHHHHHhh----C-CCCCHHHHHHHHHHHhHhh
Q 046859          271 EEDKALIEAHAEIG---NKWAEIAKR----L-PGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       271 EED~~Llelv~k~G---~kWs~IAk~----l-pgRT~~qcKnRw~~l~rr~  313 (458)
                      +|++.|........   ..+.+|=..    | ++||+.++.++|..+.+..
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~  129 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYH  129 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhc
Confidence            99999999776554   247777432    4 7899999999999776654

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.25  E-value=0.00079  Score=52.67  Aligned_cols=47  Identities=17%  Similarity=0.507  Sum_probs=40.7

Q ss_pred             ccCCCChHHHHHHHHHHHHhCC-cH---HHHHhhCC-CC-CHHHHHHHHHHHh
Q 046859          264 KKDIWSEEEDKALIEAHAEIGN-KW---AEIAKRLP-GR-TENSIKNHWNATK  310 (458)
Q Consensus       264 kk~~WT~EED~~Llelv~k~G~-kW---s~IAk~lp-gR-T~~qcKnRw~~l~  310 (458)
                      .+-.||+||..++++++..+|. .|   ..|+..+. .| |..||+.+.....
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            3567999999999999999996 99   99999873 45 9999999987654

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.21  E-value=0.00032  Score=73.94  Aligned_cols=51  Identities=24%  Similarity=0.678  Sum_probs=47.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhc
Q 046859          209 SNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHL  259 (458)
Q Consensus       209 p~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L  259 (458)
                      -.+-...||.+|+-+|++++..||.+||..||.++..|+..+|+++|.+++
T Consensus        68 ~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   68 FPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            356677899999999999999999999999999999999999999998765

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.20  E-value=0.00075  Score=62.92  Aligned_cols=52  Identities=31%  Similarity=0.547  Sum_probs=45.9

Q ss_pred             ccCCCChHHHHHHHHHHHHhC-------CcHHHHHhhCCCCCHHHHHHHHHHHhHhhhhh
Q 046859          264 KKDIWSEEEDKALIEAHAEIG-------NKWAEIAKRLPGRTENSIKNHWNATKRRQFSK  316 (458)
Q Consensus       264 kk~~WT~EED~~Llelv~k~G-------~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk  316 (458)
                      +.+.||.|||.+|-+.|.+|=       .....+++.| +||..+|-=|||+.+|+++..
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            457899999999999998873       2389999999 999999999999999988743

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.18  E-value=0.00065  Score=53.15  Aligned_cols=47  Identities=15%  Similarity=0.341  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCcccc---hhhhccCC-CC-chhhhHhhhhhhc
Q 046859          213 KGQWTTEEDRLLIRLVDQFGIRKW---SHIAQMLP-GR-IGKQCRERWHNHL  259 (458)
Q Consensus       213 kG~WT~EED~~Ll~lV~~~G~~nW---~~IA~~Lp-gR-t~~Qcr~RW~~~L  259 (458)
                      +-.||+||..+.+++++.+|..+|   ..|++.|. .| |..||+.+.+.+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999996699   99999875 45 9999999998764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.81  E-value=0.0014  Score=53.97  Aligned_cols=50  Identities=36%  Similarity=0.649  Sum_probs=36.0

Q ss_pred             cCCCChHHHHHHHHHHHH------hC--C------cHHHHHhhC----CCCCHHHHHHHHHHHhHhhh
Q 046859          265 KDIWSEEEDKALIEAHAE------IG--N------KWAEIAKRL----PGRTENSIKNHWNATKRRQF  314 (458)
Q Consensus       265 k~~WT~EED~~Llelv~k------~G--~------kWs~IAk~l----pgRT~~qcKnRw~~l~rr~~  314 (458)
                      |..||.+|...||+++.+      ++  +      .|..||..|    ..||..||++||+.+.++..
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk   68 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYK   68 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            457999999999999987      21  1      399999986    35999999999999877653

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.48  E-value=0.0036  Score=67.98  Aligned_cols=47  Identities=19%  Similarity=0.401  Sum_probs=43.4

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 046859          263 IKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNAT  309 (458)
Q Consensus       263 ikk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l  309 (458)
                      ..+..||++|..+|+++|..||..|.+||.++.+||..+|--+|..+
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            34678999999999999999999999999999999999999998654

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.40  E-value=0.0038  Score=66.51  Aligned_cols=46  Identities=22%  Similarity=0.439  Sum_probs=42.6

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 046859          264 KKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNAT  309 (458)
Q Consensus       264 kk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l  309 (458)
                      ....||.+|..+|++.|..||..|.+||++++.||..||--||..+
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            3458999999999999999999999999999999999999999664

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.40  E-value=0.0053  Score=49.31  Aligned_cols=49  Identities=29%  Similarity=0.487  Sum_probs=32.7

Q ss_pred             cCCCChHHHHHHHHHHHHhC--------Cc-HHHHHhhCC-CCCHHHHHHHHHHHhHhh
Q 046859          265 KDIWSEEEDKALIEAHAEIG--------NK-WAEIAKRLP-GRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       265 k~~WT~EED~~Llelv~k~G--------~k-Ws~IAk~lp-gRT~~qcKnRw~~l~rr~  313 (458)
                      |.++|.|||+.|++.|.++.        ++ |.+++..-+ .+|-.+.|+||...++.+
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            46899999999999997652        22 999999877 999999999998877764

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.33  E-value=0.0045  Score=58.43  Aligned_cols=51  Identities=27%  Similarity=0.527  Sum_probs=44.3

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCc-------HHHHHhhCCCCCHHHHHHHHHHHhHhhhh
Q 046859          264 KKDIWSEEEDKALIEAHAEIGNK-------WAEIAKRLPGRTENSIKNHWNATKRRQFS  315 (458)
Q Consensus       264 kk~~WT~EED~~Llelv~k~G~k-------Ws~IAk~lpgRT~~qcKnRw~~l~rr~~s  315 (458)
                      +.+.||.|||.+|-+.|..|+..       ...++..| +||..+|.-||+..+|+++.
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye   61 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ   61 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence            46789999999999999888732       67778888 99999999999999998764

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.84  E-value=0.0053  Score=50.44  Aligned_cols=48  Identities=38%  Similarity=0.779  Sum_probs=33.7

Q ss_pred             CCCCCHHHHHHHHHHHHH--h----C--c-----ccchhhhccCC----CCchhhhHhhhhhhcc
Q 046859          213 KGQWTTEEDRLLIRLVDQ--F----G--I-----RKWSHIAQMLP----GRIGKQCRERWHNHLR  260 (458)
Q Consensus       213 kG~WT~EED~~Ll~lV~~--~----G--~-----~nW~~IA~~Lp----gRt~~Qcr~RW~~~L~  260 (458)
                      |..||.+|...|+.++..  +    +  .     .-|..||..|.    .||+.||+.+|.++.+
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~   65 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKK   65 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            347999999999999877  1    1  0     13999998873    6999999999998653

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=95.74  E-value=0.0084  Score=64.01  Aligned_cols=46  Identities=20%  Similarity=0.498  Sum_probs=42.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhh
Q 046859          212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNH  258 (458)
Q Consensus       212 kkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~  258 (458)
                      ....||.+|..+|++.++.|| ..|.+||.++..|+..||-.|+.++
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            455899999999999999999 8999999999999999999999654

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.69  E-value=0.006  Score=57.01  Aligned_cols=51  Identities=27%  Similarity=0.483  Sum_probs=42.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC---c---ccchhhhccCCCCchhhhHhhhhhhcccc
Q 046859          211 VVKGQWTTEEDRLLIRLVDQFG---I---RKWSHIAQMLPGRIGKQCRERWHNHLRPD  262 (458)
Q Consensus       211 lkkG~WT~EED~~Ll~lV~~~G---~---~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~  262 (458)
                      .+...||.|||.+|.+.|-+|-   .   .-...+++.| +||+..|.=||+.++++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkq   58 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQ   58 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHH
Confidence            4567899999999999998773   1   1378899988 999999999999998754

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=95.66  E-value=0.011  Score=64.41  Aligned_cols=46  Identities=22%  Similarity=0.588  Sum_probs=42.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhh
Q 046859          212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNH  258 (458)
Q Consensus       212 kkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~  258 (458)
                      .++.||.+|..+|++.|..|| .+|.+||.++.+||..||-.++.++
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCHHHHHHHHHhc
Confidence            467899999999999999999 8999999999999999999998764

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.51  E-value=0.043  Score=44.36  Aligned_cols=49  Identities=35%  Similarity=0.561  Sum_probs=40.9

Q ss_pred             cCCCChHHHHHHHHHHHHhC----C-------------cHHHHHhhC-----CCCCHHHHHHHHHHHhHhh
Q 046859          265 KDIWSEEEDKALIEAHAEIG----N-------------KWAEIAKRL-----PGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       265 k~~WT~EED~~Llelv~k~G----~-------------kWs~IAk~l-----pgRT~~qcKnRw~~l~rr~  313 (458)
                      +..||.+|...|++++.+|.    +             .|..|+..|     +.||..+++.+|..++..-
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~   72 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA   72 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            45799999999999999873    1             299999886     3599999999999987754

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.48  E-value=0.016  Score=46.57  Aligned_cols=51  Identities=24%  Similarity=0.440  Sum_probs=32.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------cccchhhhccCC-CCchhhhHhhhhhhccccc
Q 046859          213 KGQWTTEEDRLLIRLVDQFG--------IRKWSHIAQMLP-GRIGKQCRERWHNHLRPDI  263 (458)
Q Consensus       213 kG~WT~EED~~Ll~lV~~~G--------~~nW~~IA~~Lp-gRt~~Qcr~RW~~~L~p~i  263 (458)
                      |.+||.|||++|+..|.++.        ..=|..+++.-+ .+|-.+-|+||.+.|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            46899999999999997653        112999998878 8899999999999987643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.28  E-value=0.068  Score=62.86  Aligned_cols=99  Identities=17%  Similarity=0.356  Sum_probs=77.6

Q ss_pred             CCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhh----hhh---------c----------------------
Q 046859          215 QWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERW----HNH---------L----------------------  259 (458)
Q Consensus       215 ~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW----~~~---------L----------------------  259 (458)
                      .||.-+=...+.++.+||..+-..||..|.|++...|+.+.    .++         +                      
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~  905 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK  905 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48888888888889999977889999999889887776432    110         0                      


Q ss_pred             ---------------ccccccCCCChHHHHHHHHHHHHhC-CcHHHHHhh------------CCCCCHHHHHHHHHHHhH
Q 046859          260 ---------------RPDIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKR------------LPGRTENSIKNHWNATKR  311 (458)
Q Consensus       260 ---------------~p~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~------------lpgRT~~qcKnRw~~l~r  311 (458)
                                     -+..++..+|+|||.-|+-++.+|| ++|.+|...            +..||+..|..|-..+++
T Consensus       906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~  985 (1033)
T PLN03142        906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR  985 (1033)
T ss_pred             HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence                           0112345699999999999999999 789999544            357999999999999987


Q ss_pred             hh
Q 046859          312 RQ  313 (458)
Q Consensus       312 r~  313 (458)
                      -.
T Consensus       986 ~~  987 (1033)
T PLN03142        986 LI  987 (1033)
T ss_pred             HH
Confidence            65

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.96  E-value=0.029  Score=57.64  Aligned_cols=49  Identities=29%  Similarity=0.586  Sum_probs=44.5

Q ss_pred             cccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859          263 IKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKR  311 (458)
Q Consensus       263 ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~r  311 (458)
                      +-...|+.+|+.+|++.....| ++|..||..++.|+...||.+|..+.-
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            3456799999999999999999 999999999999999999999987755

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.28  E-value=0.028  Score=57.76  Aligned_cols=50  Identities=22%  Similarity=0.543  Sum_probs=45.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcc
Q 046859          211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLR  260 (458)
Q Consensus       211 lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~  260 (458)
                      +-...|+..|+-+|++.+...|.+||.-||..++.|+...||.+|..++.
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            44457999999999999999999999999999999999999999987654

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=93.98  E-value=0.03  Score=52.93  Aligned_cols=50  Identities=26%  Similarity=0.491  Sum_probs=40.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCcc------cchhhhccCCCCchhhhHhhhhhhccc
Q 046859          211 VVKGQWTTEEDRLLIRLVDQFGIR------KWSHIAQMLPGRIGKQCRERWHNHLRP  261 (458)
Q Consensus       211 lkkG~WT~EED~~Ll~lV~~~G~~------nW~~IA~~LpgRt~~Qcr~RW~~~L~p  261 (458)
                      .++..||.|||.+|.+.|-.++..      -...++..| +|+..+|..||+..++.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk   58 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRK   58 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHH
Confidence            467789999999998888887622      155666777 89999999999888874

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=93.86  E-value=0.06  Score=43.51  Aligned_cols=48  Identities=31%  Similarity=0.564  Sum_probs=39.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCc----------------ccchhhhccC-----CCCchhhhHhhhhhhcc
Q 046859          213 KGQWTTEEDRLLIRLVDQFGI----------------RKWSHIAQML-----PGRIGKQCRERWHNHLR  260 (458)
Q Consensus       213 kG~WT~EED~~Ll~lV~~~G~----------------~nW~~IA~~L-----pgRt~~Qcr~RW~~~L~  260 (458)
                      +..||++|...|++++.++..                .-|..|+..|     +.|+..+++.+|.++..
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~   70 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKS   70 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            467999999999999988731                1399999877     26999999999998654

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=92.35  E-value=0.33  Score=40.25  Aligned_cols=47  Identities=32%  Similarity=0.674  Sum_probs=37.3

Q ss_pred             CCChHHHHHHHHHHHHh---CC----------cHHHHHhhC---CC--CCHHHHHHHHHHHhHhh
Q 046859          267 IWSEEEDKALIEAHAEI---GN----------KWAEIAKRL---PG--RTENSIKNHWNATKRRQ  313 (458)
Q Consensus       267 ~WT~EED~~Llelv~k~---G~----------kWs~IAk~l---pg--RT~~qcKnRw~~l~rr~  313 (458)
                      .||++++..|++++.+.   |+          .|..|+..|   +|  .|..||++||..+.+.-
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y   65 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDY   65 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence            49999999999998654   21          299999886   33  67899999999887764

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=91.54  E-value=0.14  Score=53.82  Aligned_cols=60  Identities=25%  Similarity=0.448  Sum_probs=50.4

Q ss_pred             hhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHHHhh-----CCC-CCHHHHHHHHHHHhHhhhhhh
Q 046859          254 RWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKR-----LPG-RTENSIKNHWNATKRRQFSKR  317 (458)
Q Consensus       254 RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~-----lpg-RT~~qcKnRw~~l~rr~~sk~  317 (458)
                      -|..+|+.    ..||.+|-.-|.++++.|.-+|..||.+     ++. ||-..+|.||..+.|+..+.+
T Consensus       123 EYe~~l~d----n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr  188 (445)
T KOG2656|consen  123 EYEAHLND----NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKAR  188 (445)
T ss_pred             HHHHhhcc----ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHcc
Confidence            35555543    6899999999999999999999999988     666 999999999999888766543

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=90.74  E-value=0.44  Score=49.13  Aligned_cols=51  Identities=31%  Similarity=0.540  Sum_probs=41.3

Q ss_pred             cCCCChHHHHHHHHHHHHh----------CCcHHHHHhhC----CCCCHHHHHHHHHHHhHhhhh
Q 046859          265 KDIWSEEEDKALIEAHAEI----------GNKWAEIAKRL----PGRTENSIKNHWNATKRRQFS  315 (458)
Q Consensus       265 k~~WT~EED~~Llelv~k~----------G~kWs~IAk~l----pgRT~~qcKnRw~~l~rr~~s  315 (458)
                      ...|+.+|-..||++..+.          +.-|..||+.+    --||+.+||+||..+.++..+
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~  118 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK  118 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            3689999999999998753          23499999954    249999999999999887654

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=90.38  E-value=0.54  Score=42.04  Aligned_cols=52  Identities=27%  Similarity=0.457  Sum_probs=41.4

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCC----cHHHHHhh------------CCCCCHHHHHHHHHHHhHhh
Q 046859          262 DIKKDIWSEEEDKALIEAHAEIGN----KWAEIAKR------------LPGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       262 ~ikk~~WT~EED~~Llelv~k~G~----kWs~IAk~------------lpgRT~~qcKnRw~~l~rr~  313 (458)
                      ..++..||++||.-|+-++.+||-    .|..|...            +..||+..|..|-..+++-.
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            556788999999999999999995    79988765            35699999999999988753

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=88.68  E-value=1.6  Score=47.16  Aligned_cols=51  Identities=22%  Similarity=0.318  Sum_probs=46.3

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhhh
Q 046859          264 KKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQF  314 (458)
Q Consensus       264 kk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~  314 (458)
                      -...||.||-.++-++...||....+|.+.||.|+-.++...|....+.+.
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~  236 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTRE  236 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhh
Confidence            456799999999999999999999999999999999999999988876653

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=85.80  E-value=0.68  Score=41.39  Aligned_cols=51  Identities=25%  Similarity=0.526  Sum_probs=38.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCc---ccchhhhccC------------CCCchhhhHhhhhhhcc
Q 046859          210 NVVKGQWTTEEDRLLIRLVDQFGI---RKWSHIAQML------------PGRIGKQCRERWHNHLR  260 (458)
Q Consensus       210 ~lkkG~WT~EED~~Ll~lV~~~G~---~nW~~IA~~L------------pgRt~~Qcr~RW~~~L~  260 (458)
                      ...+..||.+||..|+-++.++|-   +.|..|-..+            ..||+..+..|-..++.
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~  111 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK  111 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence            666789999999999999999997   7898886544            25888888877766543

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=84.94  E-value=1.8  Score=45.86  Aligned_cols=49  Identities=20%  Similarity=0.349  Sum_probs=44.4

Q ss_pred             cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859          265 KDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       265 k~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~  313 (458)
                      ..+||.+|-++...+....|...+.||..+|.|...|||.+|..--|+.
T Consensus       365 ~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~n  413 (507)
T COG5118         365 ALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVN  413 (507)
T ss_pred             CCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhhC
Confidence            4579999999999999999999999999999999999999997755544

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=83.64  E-value=1.1  Score=47.26  Aligned_cols=44  Identities=20%  Similarity=0.468  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhh
Q 046859          214 GQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNH  258 (458)
Q Consensus       214 G~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~  258 (458)
                      -+||.+|-++..++....| ..++.||..+|.|..+|++.+|.+-
T Consensus       366 ~~Ws~~e~ekFYKALs~wG-tdF~LIs~lfP~R~RkqIKaKfi~E  409 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWG-TDFSLISSLFPNRERKQIKAKFIKE  409 (507)
T ss_pred             CcccHHHHHHHHHHHHHhc-chHHHHHHhcCchhHHHHHHHHHHH
Confidence            4799999999999999999 7999999999999999999999753

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=82.47  E-value=2.2  Score=45.32  Aligned_cols=56  Identities=21%  Similarity=0.355  Sum_probs=46.5

Q ss_pred             HHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhcc-----CCC-CchhhhHhhhhhhcc
Q 046859          200 RKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQM-----LPG-RIGKQCRERWHNHLR  260 (458)
Q Consensus       200 R~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~-----Lpg-Rt~~Qcr~RW~~~L~  260 (458)
                      ..-|..+|+.    ..||.+|-+.|..|++.|- -+|--||..     .+. ||....++||+...+
T Consensus       121 ~eEYe~~l~d----n~WskeETD~LF~lck~fD-LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r  182 (445)
T KOG2656|consen  121 DEEYEAHLND----NSWSKEETDYLFDLCKRFD-LRFFVIADRYDNQQYKKSRTVEDLKERYYSVCR  182 (445)
T ss_pred             hHHHHHhhcc----ccccHHHHHHHHHHHHhcC-eeEEEEeeccchhhccccccHHHHHHHHHHHHH
Confidence            4556666654    6799999999999999999 789999987     554 999999999987654

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=80.55  E-value=4.4  Score=30.16  Aligned_cols=41  Identities=24%  Similarity=0.385  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859          270 EEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKR  311 (458)
Q Consensus       270 ~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~r  311 (458)
                      ++++..++.++...|-.|.+||..+ |.|...++.+....++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            4667788888888899999999999 9999999998876654

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	458
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		9e-37
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		1e-36
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		6e-36
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		7e-36
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		3e-34
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		2e-21
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		4e-17
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		5e-17
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		4e-15
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		6e-15
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		9e-15
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		1e-14
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		2e-14
2dim_A	70	Solution Structure Of The Myb_dna-Binding Domain Of		1e-06
1mbe_A	53	Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53		1e-05
1guu_A	52	Crystal Structure Of C-Myb R1 Length = 52		1e-05
2d9a_A	60	Solution Structure Of Rsgi Ruh-050, A Myb Dna-Bindi		4e-04

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  151 bits (381), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 64/103 (62%), Positives = 86/103 (83%)
Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
           ++KG WT EED+ +I+LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK  W+E
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
           EED+ + +AH  +GN+WAEIAK LPGRT+N+IKNHWN+T RR+
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/103 (62%), Positives = 86/103 (83%)
Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
           ++KG WT EED+ +I+LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK  W+E
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
           EED+ + +AH  +GN+WAEIAK LPGRT+N+IKNHWN+T RR+
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 86/104 (82%)
Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
           ++KG WT EED+ +I+LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK  W+E
Sbjct: 56  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQF 314
           EED+ + +AH  +GN+WAEIAK LPGRT+N+IKNHWN+T RR+ 
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 86/104 (82%)
Query: 210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWS 269
           ++VKG WT EED+ +I LV ++G ++W+ IA+ L GR+GKQCRERWHNHL P++KK  W+
Sbjct: 4   DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 270 EEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
           EEED+ + EAH  +GN+WAEIAK LPGRT+N++KNHWN+T +R+
Sbjct: 64  EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 107

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 82/102 (80%)
Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEE 272
           KG WT EED+ +I  V ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK  W+EEE
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 273 DKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQF 314
           D+ + +AH  +GN+WAEIAK LPGRT+N++KNHWN+T RR+ 
Sbjct: 87  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 67/104 (64%)
Query: 212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEE 271
           +KG +T  ED L+   V + G + W  I   LP R  KQCRERW NHL P + K  W+ E
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 272 EDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFS 315
           ED+ +   + ++G+KW+ IAK +PGRT+N+IKN WN++  ++ S
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIS 104

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 65/99 (65%)
Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEE 272
           K ++T EED  L +LV ++G + W  I+Q++  R  +QCRERW+N++ P ++ D WS EE
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 273 DKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKR 311
           D  L + +AE G KW +I+K L  R++N+I+N W    R
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIAR 99

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEE 272
           K ++T EED +L R V Q G   W  IA   P R  +QCR+RW N+L P I    W+ EE
Sbjct: 11  KQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 273 DKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHW 306
           D  L++   E G +WA IAK  PGRT+  IKN W
Sbjct: 70  DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 44/52 (84%)
Query: 262 DIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
           ++KK  W+EEED+ L +AH  +GN+WAEIAK LPGRT+N+IKNHWN+T RR+
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 43/52 (82%)
Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262
           ++KG WT EED+ LI+LV ++G ++WS IA+ L GRIGKQCRERWHNHL P+
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/51 (62%), Positives = 43/51 (84%)
Query: 263 IKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
           +KK  W+EEED+ + +AH  +GN+WAEIAK LPGRT+N+IKNHWN+T RR+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 43/52 (82%)
Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262
           ++KG WT EED+ +I+LV ++G ++WS IA+ L GRIGKQCRERWHNHL P+
Sbjct: 1   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 42/52 (80%)
Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262
           ++KG WT EED+ +I LV ++G ++WS IA+ L GRIGKQCRERWHNHL P+
Sbjct: 1   LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human Cell Division Cycle 5-Like Protein Length = 70

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 216 WTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWS 269
           W   ED +L   V ++G  +WS IA +L  +  KQC+ RW+  L P IKK  WS
Sbjct: 12  WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65

>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262
           K +WT EED  L +LV+Q G   W  IA  LP R   QC+ RW   L P+
Sbjct: 3   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1 Length = 52

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262
           K +WT EED  L +LV+Q G   W  IA  LP R   QC+ RW   L P+
Sbjct: 3   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding Domain In Mouse Cdna Length = 60

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 206 GKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERW 255
           G   +  K +WT EED  L  LV QFG + W  +A   P R  +QC+ RW
Sbjct: 1   GSSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	458
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	9e-70
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	1e-68
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	2e-67
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	7e-16
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	3e-66
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	5e-65
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	8e-41
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	4e-16
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	2e-64
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	5e-34
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-09
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	1e-30
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	4e-06
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	6e-29
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	2e-09
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	2e-27
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	2e-08
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-17
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-08
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	5e-15
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	1e-06
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	2e-13
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	3e-06
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	2e-13
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	1e-05
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	4e-12
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	1e-06
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	4e-12
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	6e-12
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	8e-06
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	9e-11
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	3e-07
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	8e-09
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	5e-07
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	4e-08
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	5e-08
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	7e-06
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	6e-08
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	1e-04
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	1e-06
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	3e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	1e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	2e-05
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	2e-06
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	6e-04
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	3e-06
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	3e-06
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	3e-05
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	6e-04
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	3e-05
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	3e-04
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	3e-04
2cjj_A	93	Radialis; plant development, DNA-binding protein,	3e-04
2cjj_A	93	Radialis; plant development, DNA-binding protein,	4e-04
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	4e-04
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	4e-04
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	7e-04

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  216 bits (553), Expect = 9e-70
 Identities = 62/106 (58%), Positives = 83/106 (78%)

Query: 208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDI 267
              + KG WT EED+ +I  V ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK  
Sbjct: 22  NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTS 81

Query: 268 WSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
           W+EEED+ + +AH  +GN+WAEIAK LPGRT+N++KNHWN+T RR+
Sbjct: 82  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  212 bits (543), Expect = 1e-68
 Identities = 64/103 (62%), Positives = 86/103 (83%)

Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
           ++KG WT EED+ +I+LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK  W+E
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61

Query: 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
           EED+ + +AH  +GN+WAEIAK LPGRT+N+IKNHWN+T RR+
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  210 bits (537), Expect = 2e-67
 Identities = 46/116 (39%), Positives = 68/116 (58%)

Query: 212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEE 271
           +KG +T  ED L+   V + G + W  I   LP R  KQCRERW NHL P + K  W+ E
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 272 EDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRAS 327
           ED+ +   + ++G+KW+ IAK +PGRT+N+IKN WN++  ++ S      +     
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPD 116

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score = 73.1 bits (180), Expect = 7e-16
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWS 269
            VVK  WT EED  + R   + G  KWS IA+++PGR     + RW++ +   I  +   
Sbjct: 51  AVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNH 109

Query: 270 EEEDKALIEAHAEIGNKWAEIAKRL 294
           +E    ++        K A++ K+L
Sbjct: 110 KE----ILLPDRSKKRKAADVPKKL 130

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  206 bits (527), Expect = 3e-66
 Identities = 43/106 (40%), Positives = 68/106 (64%)

Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEE 272
           K ++T EED  L +LV ++G + W  I+Q++  R  +QCRERW+N++ P ++ D WS EE
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60

Query: 273 DKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRK 318
           D  L + +AE G KW +I+K L  R++N+I+N W    R +   +K
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  205 bits (524), Expect = 5e-65
 Identities = 64/104 (61%), Positives = 86/104 (82%)

Query: 210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWS 269
            ++KG WT EED+ +I+LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK  W+
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 114

Query: 270 EEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
           EEED+ + +AH  +GN+WAEIAK LPGRT+N+IKNHWN+T RR+
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  142 bits (360), Expect = 8e-41
 Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 6/113 (5%)

Query: 210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWS 269
           ++ K +WT EED  L +LV+Q G   W  IA  LP R   QC+ RW   L P++ K  W+
Sbjct: 3   HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWT 62

Query: 270 EEEDKALIEAHAEIGNK-WAEIAKRLPGRTENSIKNHWN-----ATKRRQFSK 316
           +EED+ +I+   + G K W+ IAK L GR     +  W+       K+  +++
Sbjct: 63  KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 115

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 74.6 bits (184), Expect = 4e-16
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDI 263
            V K  WT EEDR++ +   + G  +W+ IA++LPGR     +  W++ +R  +
Sbjct: 107 EVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  202 bits (517), Expect = 2e-64
 Identities = 44/111 (39%), Positives = 57/111 (51%), Gaps = 1/111 (0%)

Query: 208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDI 267
                K ++T EED +L R V Q G   W  IA   P R  +QCR+RW N+L P I    
Sbjct: 6   LKAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHTP 64

Query: 268 WSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRK 318
           W+ EED  L++   E G +WA IAK  PGRT+  IKN W     +    + 
Sbjct: 65  WTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQT 115

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score =  121 bits (305), Expect = 5e-34
 Identities = 25/64 (39%), Positives = 34/64 (53%)

Query: 209 SNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIW 268
           S+   G W   ED +L   V ++G  +WS IA +L  +  KQC+ RW+  L P IKK  W
Sbjct: 5   SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEW 64

Query: 269 SEEE 272
           S   
Sbjct: 65  SGPS 68

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 260 RPDIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWN 307
               K  +W   ED+ L  A  + G N+W+ IA  L  ++    K  W 
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWY 52

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  111 bits (281), Expect = 1e-30
 Identities = 33/52 (63%), Positives = 43/52 (82%)

Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262
           ++KG WT EED+ LI+LV ++G ++WS IA+ L GRIGKQCRERWHNHL P+
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 263 IKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRT 298
           + K  W++EED+ LI+   + G  +W+ IAK L GR 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRI 37

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score =  106 bits (268), Expect = 6e-29
 Identities = 23/52 (44%), Positives = 29/52 (55%)

Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262
           + K +WT EED  L +LV+Q G   W  IA  LP R   QC+ RW   L P+
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 263 IKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWN 307
           + K  W+ EED+ L +   + G + W  IA  LP RT+   ++ W 
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 46

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score =  103 bits (258), Expect = 2e-27
 Identities = 22/59 (37%), Positives = 28/59 (47%)

Query: 206 GKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIK 264
           G   +  K +WT EED  L  LV QFG + W  +A   P R  +QC+ RW   L     
Sbjct: 1   GSSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 260 RPDIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWN 307
                K  W+ EED+ L     + G   W  +A   P RT+   +  W 
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWL 51

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 76.4 bits (188), Expect = 1e-17
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 209 SNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKD 266
           S+  K +W+ EE+  L+ L       +W  IA ++ GR   QC E +   L    ++D
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRD 60

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 263 IKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWN 307
            KK  WS EE++ L+     +  +W  IA  + GRT      H+ 
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYE 50

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 68.1 bits (167), Expect = 5e-15
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP--GRIGKQCRERWHNHLR 260
           +  W  EED+ L   V ++G   WS I        R     ++RW    +
Sbjct: 2   RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 264 KKDIWSEEEDKALIEAHAEIGN-KWAEIAKRLP--GRTENSIKNHW-NATKRR 312
           K+  W  EEDK L     + G   W++I        RT   +K+ W    K +
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 63.9 bits (156), Expect = 2e-13
 Identities = 10/54 (18%), Positives = 22/54 (40%)

Query: 206 GKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHL 259
           G   +     WT +E+  L+  V   G   W  +A  +  +  ++C + +  + 
Sbjct: 1   GSSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF 54

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 268 WSEEEDKALIEAHAEIGNK-WAEIAKRLPGRTENSIKNHWN 307
           W+ +E+ AL+EA  + G   W ++A ++  +T+   + H+ 
Sbjct: 11  WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 51

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 64.0 bits (156), Expect = 2e-13
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP--GRIGKQCRERWHNHLRPDIKKDIWSE 270
           +  W  EED+ L   V ++G   WS I        R     ++RW    +  +       
Sbjct: 10  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS--SDS 67

Query: 271 EE 272
           E+
Sbjct: 68  ED 69

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 264 KKDIWSEEEDKALIEAHAEIGN-KWAEIAKRLP--GRTENSIKNHWNATKRRQFSKR 317
           K+  W  EEDK L     + G   W++I        RT   +K+ W   K+ +    
Sbjct: 9   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 60.0 bits (146), Expect = 4e-12
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP--GRIGKQCRERWHNHLRPDI 263
           K +WT EE   +   V ++G   W+ I++  P   R     ++RW    R  +
Sbjct: 2   KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 264 KKDIWSEEEDKALIEAHAEIGN-KWAEIAKRLP--GRTENSIKNHW 306
           KK  W+ EE + +     + G   WA I+K  P   RT   IK+ W
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 46

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 65.0 bits (157), Expect = 4e-12
 Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 20/180 (11%)

Query: 213 KGQWTTEEDRLLIRLVDQFGIRK-----WSHIAQMLPGRIGKQCRERWHNHLRPDIKKDI 267
           K  +T EED  ++ +V +   R+     +  I+  +P   G   R R+  +L   ++   
Sbjct: 8   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 67

Query: 268 WSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRAS 327
             ++  K + +     GN               SIK  ++A +    +    +  Y    
Sbjct: 68  EVDKFGKLVRDDD---GNLIKT------KVLPPSIKRKFSADEDYTLAIAVKKQFYRDLF 118

Query: 328 LLQ-DYIKSLNLDAAGSSKHQRKNSSNINANNKSKAATKSSPPAAAEQDFCRSDHLVPDF 386
            +  D  +SL  D    +   R+N +             S P  AA +   R   +  +F
Sbjct: 119 QIDPDTGRSLITDEDTPTAIARRNMT-----MDPNHVPGSEPNFAAYRTQSRRGPIAREF 173

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 59.7 bits (145), Expect = 6e-12
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP--GRIGKQCRERWHNHLRPDI 263
           K +WT EE   +   V ++G   W+ I++  P   R     ++RW    R  +
Sbjct: 11  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 42.4 bits (100), Expect = 8e-06
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 264 KKDIWSEEEDKALIEAHAEIGN-KWAEIAKRLP--GRTENSIKNHW 306
           KK  W+ EE + +     + G   WA I+K  P   RT   IK+ W
Sbjct: 10  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 57.3 bits (138), Expect = 9e-11
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 254 RWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
             H+  R ++    W+EEE     +   E G  W+ IA+ +  +T +  KN +   K+RQ
Sbjct: 5   HHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDI 267
           + N+    WT EE     + + + G R WS IA+M+  +   QC+  + N+ +     +I
Sbjct: 11  RENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFNYKKRQNLDEI 69

Query: 268 WSEEEDKALIEAHAE 282
             + + K   E +A 
Sbjct: 70  LQQHKLKMEKERNAR 84

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 51.0 bits (122), Expect = 8e-09
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 207 KKSNVVKGQWTTEEDRLLIRLVDQF---GIRKWSHIAQMLPGRIGKQCRERWHNHLRPDI 263
           +++   +  WT  + +LL   + Q+       W  IA+ +P +  + C  R+   L    
Sbjct: 12  ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY-KLLVSGP 70

Query: 264 KK 265
             
Sbjct: 71  SS 72

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 46.0 bits (109), Expect = 5e-07
 Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 260 RPDIKKDIWSEEEDKALIEAHA----EIGNKWAEIAKRLPGRTENSIKNHWN 307
           R    ++ W++ + K L  A         + W +IA+ +P +++      + 
Sbjct: 13  RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYK 64

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 49.0 bits (117), Expect = 4e-08
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 216 WTTEEDRLLIRLVDQFGIRKWSHIAQML-PGRIGKQCRERWHNH 258
           W  +E+ LLI   +  G+  W+ IA  +   R  ++CR+ +   
Sbjct: 12  WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 49.0 bits (117), Expect = 5e-08
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 207 KKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLR 260
             S+    +WT EE  L  + + +FG R+W+ I++++  R   Q +     + +
Sbjct: 3   SGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFK 55

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 42.9 bits (101), Expect = 7e-06
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 260 RPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRK 318
                   W+ EE +   +  A+ G +W +I+K +  RT   +K++     R+ F  + 
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYA----RQYFKNKV 58

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 50.1 bits (119), Expect = 6e-08
 Identities = 14/113 (12%), Positives = 36/113 (31%), Gaps = 10/113 (8%)

Query: 186 AGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQ---- 241
                +   A   + ++ +       ++  +T  E  LL+  V+  G  +W  +      
Sbjct: 4   FADPNSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFE 63

Query: 242 MLPGRIGKQCRERWHN-----HLRPDIKKDIWSEEEDKALI-EAHAEIGNKWA 288
            +  R     +++W        + P  ++     +E    +  A A      +
Sbjct: 64  NVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVDSS 116

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 9/92 (9%)

Query: 264 KKDIWSEEEDKALIEAHAEIGN-KWAEIAKR----LPGRTENSIKNHW-NATKRRQFSKR 317
            +  ++  E + L+EA   +G  +W ++  R    +  RT   +K+ W         + +
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 318 KCRSKYPRASLLQDYIKSLNLDAAGSSKHQRK 349
           + R       LL    + L   A  S     +
Sbjct: 90  QRRGAPVPQELLD---RVLAAQAYWSVDSSGR 118

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 207 KKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERW 255
            K      +WT +E  LL+  ++ +    W+ +++ +  R   +C   +
Sbjct: 12  SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHF 59

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 259 LRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHW 306
            +       W+E+E   L+EA     + W ++++ +  RT++    H+
Sbjct: 12  SKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF 59

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 11/104 (10%), Positives = 37/104 (35%), Gaps = 12/104 (11%)

Query: 200 RKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQM----LPGRIGKQCRERW 255
              ++  ++    +  ++  E   L++ V++ G  +W  +          R     +++W
Sbjct: 2   SHMLEDPQRRI--RRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKW 59

Query: 256 HNHLR-----PDIKKDIWSEEEDKA-LIEAHAEIGNKWAEIAKR 293
              +      P  ++     +E    ++ AH     +  +  ++
Sbjct: 60  KTLVHTAKISPQQRRGEPVPQELLNRVLNAHGYWTQQQMQQLQQ 103

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 264 KKDIWSEEEDKALIEAHAEIGN-KWAEIAKR----LPGRTENSIKNHW-NATKRRQFSKR 317
            +  +S  E +AL++A  ++G  +W ++          RT   +K+ W       + S +
Sbjct: 12  IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 318 KCRSKYPRASLLQDYIKSLNLDAAGSSKHQRKN 350
           + R +     LL   + +         +  ++N
Sbjct: 72  QRRGEPVPQELLNRVLNAHGYWTQQQMQQLQQN 104

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 12/99 (12%), Positives = 33/99 (33%), Gaps = 10/99 (10%)

Query: 200 RKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQM----LPGRIGKQCRERW 255
           +K+ +       ++  ++  E   L+  V+  G  +W  +          R     +++W
Sbjct: 4   QKSKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKW 63

Query: 256 HNHLR-----PDIKKDIWSEEEDKALI-EAHAEIGNKWA 288
              +      P  ++     ++    +  AHA    +  
Sbjct: 64  KTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 38.6 bits (89), Expect = 6e-04
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 264 KKDIWSEEEDKALIEAHAEIGN-KWAEIAKR----LPGRTENSIKNHWNATKRRQFSKRK 318
            +  +S  E +AL+EA   +G  +W ++  R       RT   +K+ W           +
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 319 CRSKYPRASLLQDYIKSLNLDAAGSSKHQRKNSSNINAN 357
            R   P    L D  + L   A  S +  +++   +   
Sbjct: 76  QRRGEPVPQDLLD--RVLAAHAYWSQQQGKQHVEPLKIL 112

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 264 KKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKR 311
               ++ EE + L E   + GN WA I   L GR+ +S+K+     K 
Sbjct: 22  HVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 192 NNRAYHSV-RKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQ 250
           ++  +HS  R+ +      N   G++T EE   L  L  + G   W+ I   L GR    
Sbjct: 2   HHHHHHSSGRENLYFQGDRNH-VGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASS 58

Query: 251 CRERW 255
            ++R 
Sbjct: 59  VKDRC 63

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 206 GKKSNVVKGQWTTEEDRLLIRLVDQFG-----IRKWSHIAQMLPGRIGKQCRER 254
           G   +     WT EE + L +L+ ++       R+W  IA  L  R  KQ   +
Sbjct: 1   GSSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQ 54

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 37.6 bits (87), Expect = 6e-04
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 11/71 (15%)

Query: 260 RPDIKKDIWSEEEDKALIEA------HAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
                  +W+ EE K L +             +W +IA  L  RT   + +       ++
Sbjct: 3   SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQ-----VQK 57

Query: 314 FSKRKCRSKYP 324
           +  +  ++  P
Sbjct: 58  YFIKLTKAGIP 68

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 216 WTTEEDRLLIRLVDQFGIRKWSHIAQM----LPGRIGKQCRERWHNHLR 260
           ++  E   L+  V+  G  +W  +          R     +++W   + 
Sbjct: 3   FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 268 WSEEEDKALIEAHAEIG-NKWAEIAKR----LPGRTENSIKNHWNATKRRQFSKRKCRSK 322
           +S  E +AL+EA   +G  +W ++  R       RT   +K+ W           + R  
Sbjct: 3   FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 323 YPRASLLQDYIKSLN 337
            P    L D + + +
Sbjct: 63  EPVPQDLLDRVLAAH 77

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 11/65 (16%), Positives = 24/65 (36%)

Query: 249 KQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNA 308
               E +            W+ EE    ++A  + G  +  I+  +  ++   +KN +  
Sbjct: 117 DGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 176

Query: 309 TKRRQ 313
            +RR 
Sbjct: 177 YRRRF 181

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 215 QWTTEEDRLLIRLVDQFGIR---KWSHIAQMLPGRIGKQCRERWHNHLRPDIK 264
            W+ +E++   R +  +      +W+++A+ + GR  ++ ++  +  L  DIK
Sbjct: 10  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKH-YEILVEDIK 61

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 268 WSEEEDKALIEAHAEIG----NKWAEIAKRLPGRTENSIKNHW 306
           WS +E+KA   A A       ++WA +A+ + GRT   +K H+
Sbjct: 11  WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY 53

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 233 IRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKK--------DIWSEEEDKALIEAHAEIG 284
           +R+ + I  ML     ++ +    N L  D  K        ++WSE+E +   E   +  
Sbjct: 3   MRQLAVIPPMLYDADQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHP 62

Query: 285 NKWAEIAKRLPGRTENSIKNHWNATKRR 312
             +  IA  L  +T      ++  TK+ 
Sbjct: 63  KNFGLIASFLERKTVAECVLYYYLTKKN 90

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 268 WSEEEDKALIEAHAEIG----NKWAEIAKRLPGRTENSIKNHWN 307
           W   E+ A   A +       ++W ++A+ + GRT   +K H+ 
Sbjct: 23  WKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 7/48 (14%), Positives = 21/48 (43%)

Query: 266 DIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
           ++W++ E +   +   +    +  IA  L  ++      ++  TK+ +
Sbjct: 13  NVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNE 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	458
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.97
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.95
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.9
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.88
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.87
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.87
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.86
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.81
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.77
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.68
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.66
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.65
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.63
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.62
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.62
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.61
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.6
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.6
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.59
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.56
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.54
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.54
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.54
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.52
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.52
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.52
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.5
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.5
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.49
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.49
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.48
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.47
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.46
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.44
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.43
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.4
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.34
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.34
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.99
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.3
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.27
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.25
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.23
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.23
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.2
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.18
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.17
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.11
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.1
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.09
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.0
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.89
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.89
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.86
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.74
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.68
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.68
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.53
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.47
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.43
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.4
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.34
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.25
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.24
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.23
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.98
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.97
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.89
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.88
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.95
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.71
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.71
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.66
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.38
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.36
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.43
2crg_A	70	Metastasis associated protein MTA3; transcription	97.27
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.19
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.17
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.11
2crg_A	70	Metastasis associated protein MTA3; transcription	97.02
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.94
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.78
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.64
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.36
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	92.09
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	90.87
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	89.97
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	89.67
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	83.19

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=100.00  E-value=2.1e-39  Score=295.31  Aligned_cols=154  Identities=45%  Similarity=0.797  Sum_probs=113.2

Q ss_pred             CCCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 046859          153 SHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFG  232 (458)
Q Consensus       153 ~~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G  232 (458)
                      +..+||.|||+.|..+|..    ++.   ..|..++...++|++.||+.||.++|+|.+++|+||+|||++|+++|.+||
T Consensus         5 ~k~~Wt~eED~~L~~~v~~----~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g   77 (159)
T 1h89_C            5 GKTRWTREEDEKLKKLVEQ----NGT---DDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYG   77 (159)
T ss_dssp             ---------------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHH----hCC---CCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhC
Confidence            4468999999997666654    332   245666677778999999999999999999999999999999999999999


Q ss_pred             cccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859          233 IRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR  312 (458)
Q Consensus       233 ~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr  312 (458)
                      ..+|..||..|||||+.||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||+.|||||+++||+||+.++|+
T Consensus        78 ~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~  157 (159)
T 1h89_C           78 PKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR  157 (159)
T ss_dssp             SCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred             cccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             h
Q 046859          313 Q  313 (458)
Q Consensus       313 ~  313 (458)
                      +
T Consensus       158 ~  158 (159)
T 1h89_C          158 K  158 (159)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=8.1e-38  Score=275.74  Aligned_cols=126  Identities=51%  Similarity=0.946  Sum_probs=103.3

Q ss_pred             ccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCC
Q 046859          188 MDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDI  267 (458)
Q Consensus       188 ~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~  267 (458)
                      +..+++|++.||+.||.++|+|.+++|+||+|||++|+++|.+||..+|..||..||||++.||++||.++|+|.+++++
T Consensus         2 a~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~   81 (128)
T 1h8a_C            2 EAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTS   81 (128)
T ss_dssp             --------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSC
T ss_pred             ccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccccc
Confidence            44567899999999999999999999999999999999999999977899999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859          268 WSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       268 WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~  313 (458)
                      ||+|||++|+++|.+||++|+.||+.|||||+++|++||+.+++++
T Consensus        82 WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           82 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             CCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999998874

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.97  E-value=4.7e-32  Score=230.87  Aligned_cols=104  Identities=62%  Similarity=1.201  Sum_probs=99.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHH
Q 046859          210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAE  289 (458)
Q Consensus       210 ~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~  289 (458)
                      .+++|+||+|||++|+++|.+||..+|..||..||||++.||++||.++|+|.+++++||+|||++|+++|.+||++|+.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            46899999999999999999999778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCHHHHHHHHHHHhHhh
Q 046859          290 IAKRLPGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       290 IAk~lpgRT~~qcKnRw~~l~rr~  313 (458)
                      ||+.|||||+++|++||+.+++++
T Consensus        81 Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           81 IAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHcCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999998874

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.97  E-value=8.6e-32  Score=230.80  Aligned_cols=104  Identities=40%  Similarity=0.736  Sum_probs=100.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHHHh
Q 046859          213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAK  292 (458)
Q Consensus       213 kG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk  292 (458)
                      ||+||+|||++|+++|.+||..+|..||..||||++.||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            68999999999999999999779999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHhHhhhhh
Q 046859          293 RLPGRTENSIKNHWNATKRRQFSK  316 (458)
Q Consensus       293 ~lpgRT~~qcKnRw~~l~rr~~sk  316 (458)
                      .|||||+++|++||+.++++..+.
T Consensus        81 ~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           81 FLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HCCCCCHHHHHHHHHHHHhhHHHh
Confidence            999999999999999999886543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=6.9e-31  Score=231.41  Aligned_cols=106  Identities=42%  Similarity=0.760  Sum_probs=101.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCc
Q 046859          207 KKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNK  286 (458)
Q Consensus       207 Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~k  286 (458)
                      .++..++|+||+|||++|+++|.+|| .+|..||..||||++.||++||.++|+|.+++++||+|||++|+++|.+||++
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G-~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~   83 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ   83 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHT-TCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence            34678999999999999999999999 59999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859          287 WAEIAKRLPGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       287 Ws~IAk~lpgRT~~qcKnRw~~l~rr~  313 (458)
                      |+.||+.|||||+++|++||+.++++.
T Consensus        84 W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           84 WAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999998864

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.97  E-value=6.1e-31  Score=233.02  Aligned_cols=105  Identities=44%  Similarity=0.880  Sum_probs=101.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHHH
Q 046859          212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIA  291 (458)
Q Consensus       212 kkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IA  291 (458)
                      .||+||+|||++|+++|.+||..+|..||..||||++.||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus         1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            37999999999999999999988999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHhHhhhhh
Q 046859          292 KRLPGRTENSIKNHWNATKRRQFSK  316 (458)
Q Consensus       292 k~lpgRT~~qcKnRw~~l~rr~~sk  316 (458)
                      +.|||||+++|++||+.++++.++.
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~  105 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRIST  105 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999987643

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.95  E-value=1.2e-28  Score=224.37  Aligned_cols=126  Identities=33%  Similarity=0.632  Sum_probs=78.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCC-cHH
Q 046859          210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGN-KWA  288 (458)
Q Consensus       210 ~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~-kWs  288 (458)
                      .+.+|+||+|||++|+++|.+||..+|..||..||||++.||+.||.++|+|.+++++||+|||++|+++|.+||. +|.
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~   82 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS   82 (159)
T ss_dssp             ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence            3678999999999999999999988999999999999999999999999999999999999999999999999995 699


Q ss_pred             HHHhhCCCCCHHHHHHHHHHHhHhhhhhhcccCCCccchHHHHHHHHcc
Q 046859          289 EIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRASLLQDYIKSLN  337 (458)
Q Consensus       289 ~IAk~lpgRT~~qcKnRw~~l~rr~~sk~k~~~~~p~~~~l~~~iksl~  337 (458)
                      .||..|||||+.||++||..++.+..  .+..+..++..+|...++.+|
T Consensus        83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~--~~~~WT~eEd~~L~~~~~~~g  129 (159)
T 1h89_C           83 VIAKHLKGRIGKQCRERWHNHLNPEV--KKTSWTEEEDRIIYQAHKRLG  129 (159)
T ss_dssp             HHHHTSTTCCHHHHHHHHHHTTCTTS--CCSCCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCCCHHHHHHHHHHHhCccc--cccCCChHHHHHHHHHHHHHC
Confidence            99999999999999999999987654  345677777788888888886

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.90  E-value=2.5e-24  Score=190.51  Aligned_cols=128  Identities=24%  Similarity=0.315  Sum_probs=98.4

Q ss_pred             CCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcc
Q 046859          155 MQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIR  234 (458)
Q Consensus       155 ~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~  234 (458)
                      .|||.|||+.|..+|..    ++.   ..|..++..+++|++.||+.||.++|+|.+++|+||+|||++|+++|.++| .
T Consensus         3 g~Wt~eED~~L~~~v~~----~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~   74 (131)
T 3zqc_A            3 GPFTEAEDDLIREYVKE----NGP---QNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLG-S   74 (131)
T ss_dssp             SSCCHHHHHHHHHHHHH----HCS---CCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSC-S
T ss_pred             CCCCHHHHHHHHHHHHH----hCc---CCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHC-c
Confidence            47999999997666554    432   245666677778999999999999999999999999999999999999999 8


Q ss_pred             cchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHHHhhC
Q 046859          235 KWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRL  294 (458)
Q Consensus       235 nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~l  294 (458)
                      +|+.||..|||||+.||++||+++|++.+..++|+.+-    +..-...+.+|+.|++.|
T Consensus        75 ~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~~~~~i~k~~  130 (131)
T 3zqc_A           75 KWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKRKAADVPKKL  130 (131)
T ss_dssp             CHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC------------
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhhhhhhhcchhc
Confidence            99999999999999999999999999999999988763    111122345688888765

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.88  E-value=4.5e-23  Score=175.38  Aligned_cols=101  Identities=24%  Similarity=0.394  Sum_probs=87.6

Q ss_pred             CCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCc
Q 046859          154 HMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGI  233 (458)
Q Consensus       154 ~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~  233 (458)
                      ..|||.|||+.|..+|..    ++.   ..|..++...++|++.||+.||.++|+|.+++|+||+|||++|+++|.++| 
T Consensus         4 k~~WT~eED~~L~~~v~~----~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-   75 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQK----YGP---KRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG-   75 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHH----HCT---TCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHS-
T ss_pred             CCCCCHHHHHHHHHHHHH----hCC---CcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhC-
Confidence            468999999997666554    332   235666677788999999999999999999999999999999999999999 


Q ss_pred             ccchhhhccCCCCchhhhHhhhhhhcccc
Q 046859          234 RKWSHIAQMLPGRIGKQCRERWHNHLRPD  262 (458)
Q Consensus       234 ~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~  262 (458)
                      .+|..||+.|||||+.||++||+.++++.
T Consensus        76 ~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           76 NRWAEIAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             SCHHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            79999999999999999999999998754

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.87  E-value=3.9e-23  Score=176.94  Aligned_cols=101  Identities=22%  Similarity=0.265  Sum_probs=87.7

Q ss_pred             CCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcc
Q 046859          155 MQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIR  234 (458)
Q Consensus       155 ~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~  234 (458)
                      .+||.|||+.|..+|..    ++.   ..|..++..+++|+++||+.||.++|+|.+++|+||+|||.+|+++|.+|| .
T Consensus         2 ~~Wt~eED~~L~~~v~~----~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G-~   73 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMR----YGA---KDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYG-P   73 (107)
T ss_dssp             CSSCHHHHHHHHHHHHH----HCS---SCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTC-S
T ss_pred             CCCCHHHHHHHHHHHHH----HCC---CCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhC-c
Confidence            47999999997666654    432   245556667778999999999999999999999999999999999999999 7


Q ss_pred             cchhhhccCCCCchhhhHhhhhhhccccc
Q 046859          235 KWSHIAQMLPGRIGKQCRERWHNHLRPDI  263 (458)
Q Consensus       235 nW~~IA~~LpgRt~~Qcr~RW~~~L~p~i  263 (458)
                      +|..||+.|||||+.||++||..++++..
T Consensus        74 ~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~  102 (107)
T 2k9n_A           74 KWNKISKFLKNRSDNNIRNRWMMIARHRA  102 (107)
T ss_dssp             CHHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHhhHH
Confidence            99999999999999999999999887543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.87  E-value=1.1e-22  Score=179.08  Aligned_cols=100  Identities=24%  Similarity=0.392  Sum_probs=88.4

Q ss_pred             CCCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 046859          153 SHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFG  232 (458)
Q Consensus       153 ~~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G  232 (458)
                      ...+||.|||+.|..+|..    ++   . .|..++...++|++.|||.||.++|+|.+++|+||+|||++|+++|.+||
T Consensus        10 kk~~WT~eED~~L~~~v~~----~G---~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G   81 (126)
T 3osg_A           10 KKQKFTPEEDEMLKRAVAQ----HG---S-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG   81 (126)
T ss_dssp             SSCCCCHHHHHHHHHHHHH----HT---T-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHH----hC---C-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence            5678999999997666654    33   2 45666777778999999999999999999999999999999999999999


Q ss_pred             cccchhhhccCCCCchhhhHhhhhhhccc
Q 046859          233 IRKWSHIAQMLPGRIGKQCRERWHNHLRP  261 (458)
Q Consensus       233 ~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p  261 (458)
                       .+|..||+.|||||+.||++||..+++.
T Consensus        82 -~~W~~Ia~~l~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           82 -RQWAIIAKFFPGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             -SCHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred             -cCHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence             8999999999999999999999988753

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.86  E-value=5.6e-22  Score=174.53  Aligned_cols=102  Identities=23%  Similarity=0.364  Sum_probs=88.5

Q ss_pred             CCCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 046859          153 SHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFG  232 (458)
Q Consensus       153 ~~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G  232 (458)
                      ...|||.|||+.|..+|.    .++.   ..|..++...++|++.||+.||.++|+|.+++|+||+|||++|++++.++|
T Consensus        26 ~k~~Wt~eED~~L~~~v~----~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G   98 (128)
T 1h8a_C           26 NKGPWTKEEDQRVIEHVQ----KYGP---KRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG   98 (128)
T ss_dssp             CCSCCCHHHHHHHHHHHH----HTCS---CCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHH----HHCC---CCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence            456899999999665554    3332   235666677788999999999999999999999999999999999999999


Q ss_pred             cccchhhhccCCCCchhhhHhhhhhhcccc
Q 046859          233 IRKWSHIAQMLPGRIGKQCRERWHNHLRPD  262 (458)
Q Consensus       233 ~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~  262 (458)
                       .+|..||+.|||||+.+|++||+.++++.
T Consensus        99 -~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           99 -NRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             -SCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             -cCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence             79999999999999999999999998754

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.4e-20  Score=149.81  Aligned_cols=66  Identities=38%  Similarity=0.718  Sum_probs=64.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHH
Q 046859          208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEED  273 (458)
Q Consensus       208 kp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED  273 (458)
                      .|.+++|+||+|||++|+++|.+||..+|..||..|+|||++||++||.++|+|.+++++||+|||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            478899999999999999999999988999999999999999999999999999999999999998

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.77  E-value=1e-18  Score=168.41  Aligned_cols=105  Identities=22%  Similarity=0.360  Sum_probs=92.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCccc-----chhhhccCCCCchhhhHhhhhhhcccccc-------------------
Q 046859          209 SNVVKGQWTTEEDRLLIRLVDQFGIRK-----WSHIAQMLPGRIGKQCRERWHNHLRPDIK-------------------  264 (458)
Q Consensus       209 p~lkkG~WT~EED~~Ll~lV~~~G~~n-----W~~IA~~LpgRt~~Qcr~RW~~~L~p~ik-------------------  264 (458)
                      +.+.+++||+|||++|+++|+++|..+     |.+||+.|||||++|||+||+.+|++.++                   
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~   83 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   83 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence            467889999999999999999998432     99999999999999999999999999996                   


Q ss_pred             ----------cCCCChHHHHHHHHHHHH-h--------------------------------C-----------------
Q 046859          265 ----------KDIWSEEEDKALIEAHAE-I--------------------------------G-----------------  284 (458)
Q Consensus       265 ----------k~~WT~EED~~Llelv~k-~--------------------------------G-----------------  284 (458)
                                +..||.+||-.|...+.+ +                                |                 
T Consensus        84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  163 (246)
T 1ign_A           84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ  163 (246)
T ss_dssp             CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred             eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence                      789999999999999887 1                                1                 


Q ss_pred             --------CcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859          285 --------NKWAEIAKRLPGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       285 --------~kWs~IAk~lpgRT~~qcKnRw~~l~rr~  313 (458)
                              ..|..||+.+|+||.+++|+||+..++..
T Consensus       164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                    16999999999999999999999998765

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.68  E-value=1.9e-17  Score=145.52  Aligned_cols=84  Identities=13%  Similarity=0.314  Sum_probs=78.6

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhcc----CCCCchhhhHhhhhhhcc-----cccccC-CCChHHHHH
Q 046859          206 GKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQM----LPGRIGKQCRERWHNHLR-----PDIKKD-IWSEEEDKA  275 (458)
Q Consensus       206 ~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~----LpgRt~~Qcr~RW~~~L~-----p~ikk~-~WT~EED~~  275 (458)
                      .+++..++++||+|||+.|+++|++||.++|+.|+..    ++|||+.+|++||+++++     |.++++ +|++||+.+
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r   89 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            3567889999999999999999999997799999988    489999999999999998     999998 999999999


Q ss_pred             HHHHHHHhCCcHHH
Q 046859          276 LIEAHAEIGNKWAE  289 (458)
Q Consensus       276 Llelv~k~G~kWs~  289 (458)
                      |+.++..+|++|++
T Consensus        90 v~~~h~~~gn~~~~  103 (121)
T 2juh_A           90 VLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHccchhc
Confidence            99999999999976

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.66  E-value=4.7e-17  Score=131.36  Aligned_cols=61  Identities=25%  Similarity=0.309  Sum_probs=48.3

Q ss_pred             hhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859          250 QCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKR  311 (458)
Q Consensus       250 Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~r  311 (458)
                      .+.-||.++|+|.+++++||+|||++|+++|.+||++|+.||+.| |||+++||+||+.+.+
T Consensus         8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A            8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             -----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             ccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            345689999999999999999999999999999999999999999 9999999999997654

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.65  E-value=1e-16  Score=123.68  Aligned_cols=57  Identities=37%  Similarity=0.656  Sum_probs=54.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccc
Q 046859          208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIK  264 (458)
Q Consensus       208 kp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ik  264 (458)
                      .|.+++++||+|||++|+++|.+||.++|..||..|+|||+.||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            578999999999999999999999977999999999999999999999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.63  E-value=2.4e-16  Score=118.27  Aligned_cols=52  Identities=63%  Similarity=1.273  Sum_probs=49.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccc
Q 046859          211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD  262 (458)
Q Consensus       211 lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~  262 (458)
                      +++|+||+|||++|+++|.+||..+|..||..|+|||++||++||.++|+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            5789999999999999999999668999999999999999999999999984

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.62  E-value=2.9e-16  Score=124.54  Aligned_cols=64  Identities=22%  Similarity=0.345  Sum_probs=59.7

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCC--CCchhhhHhhhhhhcccccccCCCC
Q 046859          206 GKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP--GRIGKQCRERWHNHLRPDIKKDIWS  269 (458)
Q Consensus       206 ~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp--gRt~~Qcr~RW~~~L~p~ikk~~WT  269 (458)
                      ..++..++++||+|||++|+++|.+||.++|..||..|+  |||+.||++||.++|+|.+.++..+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            456788999999999999999999999889999999999  9999999999999999999987664

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.62  E-value=4.9e-16  Score=136.69  Aligned_cols=80  Identities=16%  Similarity=0.308  Sum_probs=73.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccC----CCCchhhhHhhhhhhc-----ccccccCCCChHH-HHHH
Q 046859          207 KKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQML----PGRIGKQCRERWHNHL-----RPDIKKDIWSEEE-DKAL  276 (458)
Q Consensus       207 Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~L----pgRt~~Qcr~RW~~~L-----~p~ikk~~WT~EE-D~~L  276 (458)
                      .....++++||+|||+.|+++|++||.++|+.|+..+    ++||+.||++||++++     +|.++++.|+++| +.+|
T Consensus        25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            3456688999999999999999999988999999863    8999999999999999     7999999999999 8999


Q ss_pred             HHHHHHhCCc
Q 046859          277 IEAHAEIGNK  286 (458)
Q Consensus       277 lelv~k~G~k  286 (458)
                      ++++..+|++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999975

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.61  E-value=3.3e-16  Score=117.40  Aligned_cols=52  Identities=44%  Similarity=0.850  Sum_probs=48.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccc
Q 046859          211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD  262 (458)
Q Consensus       211 lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~  262 (458)
                      +++|+||+|||++|+++|.+||..+|..||..|||||+.||++||.++|+|.
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            4789999999999999999999669999999999999999999999999984

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=2.1e-16  Score=124.28  Aligned_cols=60  Identities=28%  Similarity=0.514  Sum_probs=56.5

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCC
Q 046859          206 GKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDI  267 (458)
Q Consensus       206 ~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~  267 (458)
                      +|+|.+++++||+|||++|+++|+.+| .+|.+||. ++|||++|||+||+++|+|.++++.
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            789999999999999999999999999 69999999 8899999999999999999887653

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.60  E-value=4.8e-16  Score=125.45  Aligned_cols=64  Identities=22%  Similarity=0.303  Sum_probs=48.2

Q ss_pred             HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccc
Q 046859          198 SVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIK  264 (458)
Q Consensus       198 qCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ik  264 (458)
                      ...-||.++|+|.+++|+||+|||++|+++++++| .+|+.||+.| |||++|||+||+. |....+
T Consensus         8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l-gRt~~q~knRw~~-L~~~~~   71 (73)
T 2llk_A            8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRCRL-MKDTCN   71 (73)
T ss_dssp             -----------CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred             ccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence            44568999999999999999999999999999999 6799999999 9999999999986 443433

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=1.4e-15  Score=119.55  Aligned_cols=59  Identities=24%  Similarity=0.385  Sum_probs=55.7

Q ss_pred             hcccccccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhhhhhh
Q 046859          258 HLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKR  317 (458)
Q Consensus       258 ~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk~  317 (458)
                      +|+|.+++++||+|||++|+++|.+||.+|.+||+ ++|||+.|||+||+.++++..++.
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            68999999999999999999999999999999999 889999999999999999876554

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.56  E-value=3.9e-15  Score=119.05  Aligned_cols=58  Identities=19%  Similarity=0.261  Sum_probs=54.2

Q ss_pred             cccccccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhhhhh
Q 046859          259 LRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSK  316 (458)
Q Consensus       259 L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk  316 (458)
                      .+|.+++++||+|||++|+++|.+||++|..||+.|||||+.|||+||+.++++..+.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5688999999999999999999999999999999999999999999999999886543

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.54  E-value=3.3e-15  Score=115.61  Aligned_cols=55  Identities=16%  Similarity=0.423  Sum_probs=51.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccc
Q 046859          208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD  262 (458)
Q Consensus       208 kp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~  262 (458)
                      .+.+.+++||+|||++|+++|++||..+|.+||+.|||||+.||++||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence            4788999999999999999999999889999999999999999999999999764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.54  E-value=4.9e-15  Score=114.24  Aligned_cols=55  Identities=24%  Similarity=0.436  Sum_probs=51.1

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhHhhh
Q 046859          260 RPDIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRRQF  314 (458)
Q Consensus       260 ~p~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~  314 (458)
                      .|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+.++++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            4678999999999999999999999 699999999999999999999999987653

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.54  E-value=3.1e-15  Score=117.67  Aligned_cols=55  Identities=25%  Similarity=0.535  Sum_probs=49.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCC--CCchhhhHhhhhhhcccccc
Q 046859          210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP--GRIGKQCRERWHNHLRPDIK  264 (458)
Q Consensus       210 ~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp--gRt~~Qcr~RW~~~L~p~ik  264 (458)
                      ..+|++||+|||++|+++|.+||..+|..||+.++  |||+.||++||.+++++.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            45789999999999999999999889999999876  99999999999999998764

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.52  E-value=4.9e-15  Score=118.52  Aligned_cols=58  Identities=24%  Similarity=0.448  Sum_probs=54.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhccccccc
Q 046859          207 KKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKK  265 (458)
Q Consensus       207 Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk  265 (458)
                      ..|.+++|+||+|||++|+++|.+|| .+|..||..|||||+.||++||+++|++.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999 69999999999999999999999999887765

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.52  E-value=1.3e-14  Score=108.66  Aligned_cols=50  Identities=30%  Similarity=0.593  Sum_probs=45.9

Q ss_pred             cccCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859          263 IKKDIWSEEEDKALIEAHAEIGN-KWAEIAKRLPGRTENSIKNHWNATKRR  312 (458)
Q Consensus       263 ikk~~WT~EED~~Llelv~k~G~-kWs~IAk~lpgRT~~qcKnRw~~l~rr  312 (458)
                      +++++||+|||++|+++|.+||. +|+.||+.|||||+.||++||+.+++.
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999997 999999999999999999999998764

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.52  E-value=7.5e-15  Score=110.70  Aligned_cols=49  Identities=27%  Similarity=0.497  Sum_probs=46.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCcccchhhhccCC--CCchhhhHhhhhhhcc
Q 046859          212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP--GRIGKQCRERWHNHLR  260 (458)
Q Consensus       212 kkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp--gRt~~Qcr~RW~~~L~  260 (458)
                      ++|+||+|||++|+++|.+||.++|..||..++  |||+.||++||.++++
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            479999999999999999999889999999999  9999999999999886

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1e-14  Score=117.25  Aligned_cols=61  Identities=26%  Similarity=0.348  Sum_probs=56.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCc-----ccchhhhccCCCCchhhhHhhhhhhcccccccCCC
Q 046859          208 KSNVVKGQWTTEEDRLLIRLVDQFGI-----RKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIW  268 (458)
Q Consensus       208 kp~lkkG~WT~EED~~Ll~lV~~~G~-----~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~W  268 (458)
                      +|.+.+++||+|||++|+++|.+||.     .+|..||..|+|||+.||++||+++|.+.++.+..
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~   68 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP   68 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            68899999999999999999999996     78999999999999999999999999988776643

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.50  E-value=2.8e-14  Score=107.59  Aligned_cols=49  Identities=31%  Similarity=0.579  Sum_probs=46.4

Q ss_pred             ccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC--CCCHHHHHHHHHHHhHh
Q 046859          264 KKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLP--GRTENSIKNHWNATKRR  312 (458)
Q Consensus       264 kk~~WT~EED~~Llelv~k~G-~kWs~IAk~lp--gRT~~qcKnRw~~l~rr  312 (458)
                      ++++||+|||++|+++|.+|| ++|+.||..++  |||+.||++||..++|.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 79999999999  99999999999999874

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.49  E-value=2.9e-14  Score=106.86  Aligned_cols=50  Identities=32%  Similarity=0.660  Sum_probs=46.5

Q ss_pred             cccCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859          263 IKKDIWSEEEDKALIEAHAEIGN-KWAEIAKRLPGRTENSIKNHWNATKRR  312 (458)
Q Consensus       263 ikk~~WT~EED~~Llelv~k~G~-kWs~IAk~lpgRT~~qcKnRw~~l~rr  312 (458)
                      +++++||+|||++|+++|.+||. +|..||..|+|||+.||++||...++.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999996 699999999999999999999988753

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.49  E-value=4.1e-14  Score=112.18  Aligned_cols=58  Identities=26%  Similarity=0.471  Sum_probs=53.0

Q ss_pred             cccccccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC--CCCHHHHHHHHHHHhHhhhhh
Q 046859          259 LRPDIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLP--GRTENSIKNHWNATKRRQFSK  316 (458)
Q Consensus       259 L~p~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lp--gRT~~qcKnRw~~l~rr~~sk  316 (458)
                      ..+..++++||+|||++|+++|.+|| ++|+.||..|+  |||+.||++||+.+++..+.+
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k   64 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS   64 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence            45667899999999999999999999 79999999999  999999999999999987543

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.48  E-value=2.1e-14  Score=110.50  Aligned_cols=52  Identities=25%  Similarity=0.614  Sum_probs=48.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCC-CCchhhhHhhhhhhc
Q 046859          208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP-GRIGKQCRERWHNHL  259 (458)
Q Consensus       208 kp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp-gRt~~Qcr~RW~~~L  259 (458)
                      ...+.+++||+|||++|+++|++||..+|..||+.|+ +||++||++||.+++
T Consensus         4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3457789999999999999999999889999999999 999999999999875

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=4.4e-14  Score=112.20  Aligned_cols=57  Identities=26%  Similarity=0.458  Sum_probs=52.7

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhHhhhhh
Q 046859          260 RPDIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRRQFSK  316 (458)
Q Consensus       260 ~p~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk  316 (458)
                      .+.+++++||+|||++|+++|.+|| ++|..||..|+|||..||++||..+++..+++
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~   61 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK   61 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence            4678899999999999999999999 89999999999999999999999999876543

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.46  E-value=6.6e-14  Score=108.27  Aligned_cols=52  Identities=21%  Similarity=0.455  Sum_probs=48.7

Q ss_pred             cccccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859          261 PDIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRR  312 (458)
Q Consensus       261 p~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~rr  312 (458)
                      +.+.+++||+|||++|+++|.+|| ++|.+||+.|||||+.||++||..++..
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            568899999999999999999999 8999999999999999999999987654

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.44  E-value=1.4e-13  Score=108.25  Aligned_cols=51  Identities=35%  Similarity=0.628  Sum_probs=46.5

Q ss_pred             cccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC--CCCHHHHHHHHHHHhHhh
Q 046859          263 IKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLP--GRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       263 ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lp--gRT~~qcKnRw~~l~rr~  313 (458)
                      .++++||+|||++|+++|.+|| ++|+.||+.+|  |||+.||++||+.+++..
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            4689999999999999999999 68999999976  999999999999998764

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.5e-13  Score=110.40  Aligned_cols=56  Identities=20%  Similarity=0.319  Sum_probs=51.2

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhC------CcHHHHHhhCCCCCHHHHHHHHHHHhHhhhh
Q 046859          260 RPDIKKDIWSEEEDKALIEAHAEIG------NKWAEIAKRLPGRTENSIKNHWNATKRRQFS  315 (458)
Q Consensus       260 ~p~ikk~~WT~EED~~Llelv~k~G------~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~s  315 (458)
                      +|.+.+++||+|||++|+++|.+||      ++|.+||..|+|||..||++||+.++++..+
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k   64 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK   64 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            4678899999999999999999999      7899999999999999999999888776543

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.40  E-value=3.8e-13  Score=103.46  Aligned_cols=49  Identities=29%  Similarity=0.570  Sum_probs=45.6

Q ss_pred             cccccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC-CCCHHHHHHHHHHH
Q 046859          261 PDIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLP-GRTENSIKNHWNAT  309 (458)
Q Consensus       261 p~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lp-gRT~~qcKnRw~~l  309 (458)
                      ..+.+++||+|||++|+++|.+|| ++|..||+.|+ |||+.||++||..+
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~   55 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT   55 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            346688999999999999999999 89999999999 99999999999875

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.06  E-value=5.4e-14  Score=117.15  Aligned_cols=56  Identities=29%  Similarity=0.410  Sum_probs=52.8

Q ss_pred             hcccccccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859          258 HLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       258 ~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~  313 (458)
                      .+.|.+++++||+|||++|+++|.+||++|+.||..|||||+.||++||+.++++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            46788999999999999999999999999999999999999999999999988874

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.34  E-value=9.8e-13  Score=112.98  Aligned_cols=78  Identities=14%  Similarity=0.324  Sum_probs=66.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccC----CCCchhhhHhhhhhhc-----ccccccCCCChHHHHH-H
Q 046859          207 KKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQML----PGRIGKQCRERWHNHL-----RPDIKKDIWSEEEDKA-L  276 (458)
Q Consensus       207 Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~L----pgRt~~Qcr~RW~~~L-----~p~ikk~~WT~EED~~-L  276 (458)
                      ..+..++++||+|||+.|+++|++||.++|+.|+..+    ++||+.+|++||++++     +|.++++.-++.|-.. +
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            3467889999999999999999999977999999865    8999999999999999     6888888887777544 6


Q ss_pred             HHHHHHhC
Q 046859          277 IEAHAEIG  284 (458)
Q Consensus       277 lelv~k~G  284 (458)
                      ++++..+|
T Consensus        87 ~~~~~~~~   94 (105)
T 2aje_A           87 LNAHGYWT   94 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776655

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.34  E-value=1.9e-12  Score=106.77  Aligned_cols=69  Identities=16%  Similarity=0.369  Sum_probs=59.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCcccchhhhcc----CCCCchhhhHhhhhhhc-----ccccccC-CCChHHHHHHHHHHHH
Q 046859          214 GQWTTEEDRLLIRLVDQFGIRKWSHIAQM----LPGRIGKQCRERWHNHL-----RPDIKKD-IWSEEEDKALIEAHAE  282 (458)
Q Consensus       214 G~WT~EED~~Ll~lV~~~G~~nW~~IA~~----LpgRt~~Qcr~RW~~~L-----~p~ikk~-~WT~EED~~Llelv~k  282 (458)
                      ++||+|||+.|+++|++||.++|+.|++.    ++|||+.+|++||++++     .|.++++ +..++...+++.+++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            48999999999999999997799999985    89999999999999988     5666654 5777777888888754

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.99  E-value=1.7e-13  Score=114.18  Aligned_cols=55  Identities=27%  Similarity=0.447  Sum_probs=51.7

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhccc
Q 046859          206 GKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRP  261 (458)
Q Consensus       206 ~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p  261 (458)
                      .+.|.+.+|+||+|||++|+++|.+|| .+|..||..|||||+.||++||+++|+.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~l~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFNYKKR   63 (89)
Confidence            456899999999999999999999999 6899999999999999999999999874

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.30  E-value=2.1e-12  Score=104.18  Aligned_cols=52  Identities=15%  Similarity=0.353  Sum_probs=48.0

Q ss_pred             cccccCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859          261 PDIKKDIWSEEEDKALIEAHAEIG----NKWAEIAKRLPGRTENSIKNHWNATKRR  312 (458)
Q Consensus       261 p~ikk~~WT~EED~~Llelv~k~G----~kWs~IAk~lpgRT~~qcKnRw~~l~rr  312 (458)
                      +.+.+++||.|||.+|++++.+||    ++|.+||..|||||..||++||+.+++.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            446788999999999999999999    7899999999999999999999998764

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.27  E-value=2.5e-12  Score=103.68  Aligned_cols=53  Identities=21%  Similarity=0.513  Sum_probs=48.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC---cccchhhhccCCCCchhhhHhhhhhhcc
Q 046859          208 KSNVVKGQWTTEEDRLLIRLVDQFG---IRKWSHIAQMLPGRIGKQCRERWHNHLR  260 (458)
Q Consensus       208 kp~lkkG~WT~EED~~Ll~lV~~~G---~~nW~~IA~~LpgRt~~Qcr~RW~~~L~  260 (458)
                      ++...+++||++||.+|++++..||   ..+|.+||.+|||||++||++||..++.
T Consensus        13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            4677889999999999999999999   4689999999999999999999998775

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.25  E-value=2.2e-11  Score=100.51  Aligned_cols=49  Identities=27%  Similarity=0.477  Sum_probs=45.5

Q ss_pred             CCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCCHHHHHHHHHHHhHhhh
Q 046859          266 DIWSEEEDKALIEAHAEIGN-KWAEIAKR----LPGRTENSIKNHWNATKRRQF  314 (458)
Q Consensus       266 ~~WT~EED~~Llelv~k~G~-kWs~IAk~----lpgRT~~qcKnRw~~l~rr~~  314 (458)
                      .+||+|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+.+++...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            47999999999999999996 99999996    899999999999999998654

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.23  E-value=4.3e-12  Score=103.65  Aligned_cols=50  Identities=18%  Similarity=0.485  Sum_probs=46.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhh
Q 046859          208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNH  258 (458)
Q Consensus       208 kp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~  258 (458)
                      .....+++||+|||++|+++|++|| .+|.+||++|++||+.||+.||.++
T Consensus        13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            3466789999999999999999999 9999999999999999999999987

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.23  E-value=6.4e-12  Score=102.64  Aligned_cols=47  Identities=21%  Similarity=0.401  Sum_probs=44.4

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 046859          263 IKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNAT  309 (458)
Q Consensus       263 ikk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l  309 (458)
                      ..+++||+|||.+|+++|.+||++|.+||+++++||..||++||..+
T Consensus        16 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           16 SAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             ccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            45789999999999999999999999999999999999999999765

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.20  E-value=3.3e-11  Score=103.47  Aligned_cols=55  Identities=20%  Similarity=0.350  Sum_probs=49.1

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCC-cHHHHHhhC----CCCCHHHHHHHHHHHhHhhh
Q 046859          260 RPDIKKDIWSEEEDKALIEAHAEIGN-KWAEIAKRL----PGRTENSIKNHWNATKRRQF  314 (458)
Q Consensus       260 ~p~ikk~~WT~EED~~Llelv~k~G~-kWs~IAk~l----pgRT~~qcKnRw~~l~rr~~  314 (458)
                      .+..++++||+|||+.|+++|.+||. +|+.|++.+    +|||+.+||+||+.+++...
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~   67 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK   67 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            34567899999999999999999996 999999975    89999999999999998653

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.18  E-value=2.4e-11  Score=94.87  Aligned_cols=51  Identities=18%  Similarity=0.290  Sum_probs=46.7

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCcHHHHHh---hCCCCCHHHHHHHHHHHhHhh
Q 046859          263 IKKDIWSEEEDKALIEAHAEIGNKWAEIAK---RLPGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       263 ikk~~WT~EED~~Llelv~k~G~kWs~IAk---~lpgRT~~qcKnRw~~l~rr~  313 (458)
                      .++.+||+|||+.|+++|++||.+|+.|+.   .+++||..++|+||+.++|+.
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~   59 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP   59 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence            367899999999999999999999999994   579999999999999998863

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.17  E-value=5.6e-11  Score=104.42  Aligned_cols=55  Identities=25%  Similarity=0.451  Sum_probs=50.2

Q ss_pred             cccccccCCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCCHHHHHHHHHHHhHhh
Q 046859          259 LRPDIKKDIWSEEEDKALIEAHAEIGN-KWAEIAKR----LPGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       259 L~p~ikk~~WT~EED~~Llelv~k~G~-kWs~IAk~----lpgRT~~qcKnRw~~l~rr~  313 (458)
                      +.+..++++||.|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+.+++..
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            456678999999999999999999996 99999998    49999999999999999854

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.11  E-value=5.5e-11  Score=114.82  Aligned_cols=106  Identities=15%  Similarity=0.158  Sum_probs=85.1

Q ss_pred             CCCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCC--------------------
Q 046859          153 SHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVV--------------------  212 (458)
Q Consensus       153 ~~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lk--------------------  212 (458)
                      ...+||.|||+.+-.++.+......  +...|..++..++|||+.|||.||+.+|++.+.                    
T Consensus         7 ~k~~FT~EED~~Ile~v~k~Gn~r~--ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~i   84 (246)
T 1ign_A            7 NKASFTDEEDEFILDVVRKNPTRRT--THTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLI   84 (246)
T ss_dssp             -CCCCCHHHHHHHHHHHHTSGGGTT--CSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCcc--ccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCce
Confidence            4558999999997666654333211  123467777889999999999999999999996                    


Q ss_pred             ---------CCCCCHHHHHHHHHHHHH-h--------------------------------Cc-----------------
Q 046859          213 ---------KGQWTTEEDRLLIRLVDQ-F--------------------------------GI-----------------  233 (458)
Q Consensus       213 ---------kG~WT~EED~~Ll~lV~~-~--------------------------------G~-----------------  233 (458)
                               |.+||.+||-.|...+.+ +                                +.                 
T Consensus        85 kis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  164 (246)
T 1ign_A           85 KTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQS  164 (246)
T ss_dssp             EESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCC
T ss_pred             eeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcccc
Confidence                     899999999999998876 1                                11                 


Q ss_pred             -------ccchhhhccCCCCchhhhHhhhhhhcc
Q 046859          234 -------RKWSHIAQMLPGRIGKQCRERWHNHLR  260 (458)
Q Consensus       234 -------~nW~~IA~~LpgRt~~Qcr~RW~~~L~  260 (458)
                             ..|..||+.+|+||..+.|+||..+|+
T Consensus       165 ~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~  198 (246)
T 1ign_A          165 RRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLL  198 (246)
T ss_dssp             CCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHH
T ss_pred             ccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHh
Confidence                   269999999999999999999998876

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.10  E-value=1.4e-10  Score=97.60  Aligned_cols=50  Identities=30%  Similarity=0.557  Sum_probs=46.0

Q ss_pred             ccCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859          264 KKDIWSEEEDKALIEAHAEIG----NKWAEIAKRLPGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       264 kk~~WT~EED~~Llelv~k~G----~kWs~IAk~lpgRT~~qcKnRw~~l~rr~  313 (458)
                      .+++||.|||.+|++++.+||    ++|.+||..|||||..+|++||+.+++..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    78999999999999999999999998765

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.09  E-value=2.5e-10  Score=100.44  Aligned_cols=54  Identities=20%  Similarity=0.408  Sum_probs=48.3

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCCHHHHHHHHHHHhHhh
Q 046859          260 RPDIKKDIWSEEEDKALIEAHAEIGN-KWAEIAKR----LPGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       260 ~p~ikk~~WT~EED~~Llelv~k~G~-kWs~IAk~----lpgRT~~qcKnRw~~l~rr~  313 (458)
                      ....++++||.|||+.|+++|.+||. +|+.|++.    |+|||..+||+||+.+++..
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            34457899999999999999999996 99999997    48999999999999999754

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.00  E-value=1.7e-10  Score=97.01  Aligned_cols=49  Identities=14%  Similarity=0.465  Sum_probs=44.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC---cccchhhhccCCCCchhhhHhhhhhhc
Q 046859          211 VVKGQWTTEEDRLLIRLVDQFG---IRKWSHIAQMLPGRIGKQCRERWHNHL  259 (458)
Q Consensus       211 lkkG~WT~EED~~Ll~lV~~~G---~~nW~~IA~~LpgRt~~Qcr~RW~~~L  259 (458)
                      ..+++||+|||.+|++++..||   ..+|.+||..|||||++||++||..++
T Consensus         6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV   57 (93)
T ss_dssp             --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3468999999999999999997   468999999999999999999999875

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.89  E-value=3.4e-09  Score=89.08  Aligned_cols=65  Identities=15%  Similarity=0.291  Sum_probs=59.4

Q ss_pred             hhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHHHhhC-----CCCCHHHHHHHHHHHhHhhhhhh
Q 046859          249 KQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRL-----PGRTENSIKNHWNATKRRQFSKR  317 (458)
Q Consensus       249 ~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~l-----pgRT~~qcKnRw~~l~rr~~sk~  317 (458)
                      .-+.++|.++|.+    ++||.||+..|++|+++||.+|..|+.++     ++||..++|+||..+.++....+
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4678899999986    89999999999999999999999999999     58999999999999999876655

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.89  E-value=1.3e-09  Score=85.05  Aligned_cols=50  Identities=22%  Similarity=0.396  Sum_probs=45.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCcccchhhh---ccCCCCchhhhHhhhhhhccc
Q 046859          211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIA---QMLPGRIGKQCRERWHNHLRP  261 (458)
Q Consensus       211 lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA---~~LpgRt~~Qcr~RW~~~L~p  261 (458)
                      ..+.+||+|||+.|++.|++|| .+|+.|+   ..+++||..++++||+++.+.
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G-~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHh-HhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            4678999999999999999999 5999999   577899999999999997764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=3.4e-09  Score=82.13  Aligned_cols=48  Identities=15%  Similarity=0.259  Sum_probs=44.6

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859          264 KKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKR  311 (458)
Q Consensus       264 kk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~r  311 (458)
                      ..++||+||+.++++++.+||.+|..||..||+||..+|+.+|...++
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457899999999999999999999999999999999999999987654

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.74  E-value=9.6e-09  Score=79.60  Aligned_cols=49  Identities=16%  Similarity=0.202  Sum_probs=44.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhc
Q 046859          210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHL  259 (458)
Q Consensus       210 ~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L  259 (458)
                      ....++||+||++++++++..|| ++|..||..||+||..||..+|....
T Consensus         9 r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            9 RQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            44568999999999999999999 89999999999999999999997644

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.68  E-value=2.4e-08  Score=80.21  Aligned_cols=50  Identities=22%  Similarity=0.428  Sum_probs=45.4

Q ss_pred             ccccCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859          262 DIKKDIWSEEEDKALIEAHAEIG----NKWAEIAKRLPGRTENSIKNHWNATKRR  312 (458)
Q Consensus       262 ~ikk~~WT~EED~~Llelv~k~G----~kWs~IAk~lpgRT~~qcKnRw~~l~rr  312 (458)
                      ..+.+.||.||+.+|.+++.+|+    ++|.+||..+ |||..+|++||+.+++.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            34568899999999999999997    6899999998 99999999999998765

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.68  E-value=1.4e-08  Score=97.39  Aligned_cols=49  Identities=20%  Similarity=0.389  Sum_probs=45.7

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859          264 KKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR  312 (458)
Q Consensus       264 kk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr  312 (458)
                      ....||+||+.++++++.+||++|..||+.+++||..|||++|...+|+
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999977665

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.53  E-value=4.4e-08  Score=78.67  Aligned_cols=52  Identities=23%  Similarity=0.338  Sum_probs=45.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC---cccchhhhccCCCCchhhhHhhhhhhccc
Q 046859          209 SNVVKGQWTTEEDRLLIRLVDQFG---IRKWSHIAQMLPGRIGKQCRERWHNHLRP  261 (458)
Q Consensus       209 p~lkkG~WT~EED~~Ll~lV~~~G---~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p  261 (458)
                      .....+.||+||+.+|.+++..|+   ..+|.+||..+ |||..+|+.||..+...
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            345678999999999999999997   46799999998 99999999999987653

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.47  E-value=1.6e-07  Score=75.75  Aligned_cols=49  Identities=22%  Similarity=0.409  Sum_probs=44.6

Q ss_pred             cCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859          265 KDIWSEEEDKALIEAHAEIG----NKWAEIAKRLPGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       265 k~~WT~EED~~Llelv~k~G----~kWs~IAk~lpgRT~~qcKnRw~~l~rr~  313 (458)
                      ...||.+|+.+|.+++..|+    ++|.+||..+||||..+|+.||..+++..
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~   60 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            46899999999999999998    47999999999999999999999986653

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.43  E-value=1.4e-07  Score=99.32  Aligned_cols=47  Identities=21%  Similarity=0.420  Sum_probs=43.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859          266 DIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR  312 (458)
Q Consensus       266 ~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr  312 (458)
                      ..||.||-.++++++.+||..|..||..++.||..|||++|....++
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999754443

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.40  E-value=1.1e-07  Score=79.91  Aligned_cols=60  Identities=17%  Similarity=0.231  Sum_probs=54.5

Q ss_pred             hHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccC-----CCCchhhhHhhhhhhccc
Q 046859          197 HSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQML-----PGRIGKQCRERWHNHLRP  261 (458)
Q Consensus       197 kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~L-----pgRt~~Qcr~RW~~~L~p  261 (458)
                      .-|.++|.++|.+    ++||.||+..|++|+++++ .+|..|+..+     ++||..++++||..+.+.
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~   82 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK   82 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence            3678999999987    8999999999999999999 8999999998     589999999999887654

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.34  E-value=2.8e-07  Score=88.52  Aligned_cols=49  Identities=24%  Similarity=0.481  Sum_probs=45.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcc
Q 046859          211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLR  260 (458)
Q Consensus       211 lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~  260 (458)
                      ...++||+||++++++++.+|| ++|..||+.|++||..||+++|+++.+
T Consensus       131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            4567999999999999999999 899999999999999999999998765

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.25  E-value=1.1e-06  Score=67.83  Aligned_cols=47  Identities=23%  Similarity=0.431  Sum_probs=42.2

Q ss_pred             cCCCChHHHHHHHHHHHHh--------CCc-HHHHHh-hCCCCCHHHHHHHHHHHhH
Q 046859          265 KDIWSEEEDKALIEAHAEI--------GNK-WAEIAK-RLPGRTENSIKNHWNATKR  311 (458)
Q Consensus       265 k~~WT~EED~~Llelv~k~--------G~k-Ws~IAk-~lpgRT~~qcKnRw~~l~r  311 (458)
                      |.+||+|||..|++.|.++        |++ |..+|+ .+|++|-.+||+||...++
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        544 999999 7999999999999987654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.24  E-value=8.1e-07  Score=68.62  Aligned_cols=48  Identities=21%  Similarity=0.413  Sum_probs=43.7

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------Ccccchhhhc-cCCCCchhhhHhhhhhhcc
Q 046859          213 KGQWTTEEDRLLIRLVDQF--------GIRKWSHIAQ-MLPGRIGKQCRERWHNHLR  260 (458)
Q Consensus       213 kG~WT~EED~~Ll~lV~~~--------G~~nW~~IA~-~LpgRt~~Qcr~RW~~~L~  260 (458)
                      |.+||+|||.+|++.|.++        |..-|..+|+ .+|++|-.+||+||.++|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        5456999999 8999999999999999875

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.23  E-value=1.2e-06  Score=70.58  Aligned_cols=50  Identities=18%  Similarity=0.355  Sum_probs=44.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCc---ccchhhhccCCCCchhhhHhhhhhhccc
Q 046859          212 VKGQWTTEEDRLLIRLVDQFGI---RKWSHIAQMLPGRIGKQCRERWHNHLRP  261 (458)
Q Consensus       212 kkG~WT~EED~~Ll~lV~~~G~---~nW~~IA~~LpgRt~~Qcr~RW~~~L~p  261 (458)
                      ....||.+|+.+|.+++..|+.   .+|.+||..+||||..+|+.||..+++.
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            3468999999999999999974   4799999999999999999999988654

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.98  E-value=2.2e-05  Score=78.56  Aligned_cols=100  Identities=19%  Similarity=0.263  Sum_probs=81.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhc----------------------------------
Q 046859          214 GQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHL----------------------------------  259 (458)
Q Consensus       214 G~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L----------------------------------  259 (458)
                      +.||..+....+.++.+||..+|..||..|+|+|...|+..+.-+.                                  
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~  190 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD  190 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4599999999999999999889999999999999888765432110                                  


Q ss_pred             ----------------ccccccCCCChHHHHHHHHHHHHhC----CcHHHHHh------------hCCCCCHHHHHHHHH
Q 046859          260 ----------------RPDIKKDIWSEEEDKALIEAHAEIG----NKWAEIAK------------RLPGRTENSIKNHWN  307 (458)
Q Consensus       260 ----------------~p~ikk~~WT~EED~~Llelv~k~G----~kWs~IAk------------~lpgRT~~qcKnRw~  307 (458)
                                      .+..+...||++||..|+-++.+||    +.|..|..            .+..||+.+|..|-+
T Consensus       191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~  270 (304)
T 1ofc_X          191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN  270 (304)
T ss_dssp             HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred             HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence                            0112346799999999999999999    46999973            346799999999999


Q ss_pred             HHhHhh
Q 046859          308 ATKRRQ  313 (458)
Q Consensus       308 ~l~rr~  313 (458)
                      .|++-.
T Consensus       271 tLi~~i  276 (304)
T 1ofc_X          271 TLITLI  276 (304)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.97  E-value=9.7e-06  Score=67.58  Aligned_cols=49  Identities=16%  Similarity=0.394  Sum_probs=45.2

Q ss_pred             CCCChHHHHHHHHHHHHhCC---cHHHHHhhCCCCCHHHHHHHHHHHhHhhh
Q 046859          266 DIWSEEEDKALIEAHAEIGN---KWAEIAKRLPGRTENSIKNHWNATKRRQF  314 (458)
Q Consensus       266 ~~WT~EED~~Llelv~k~G~---kWs~IAk~lpgRT~~qcKnRw~~l~rr~~  314 (458)
                      -.||.|||..|+...++-|.   .|+.||+.|.+|+++|+++||+.+++-..
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~   85 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH   85 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            35999999999999999996   79999999999999999999999988653

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.89  E-value=3.3e-05  Score=64.83  Aligned_cols=61  Identities=16%  Similarity=0.326  Sum_probs=52.2

Q ss_pred             hhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHHHhhCC-----CCCHHHHHHHHHHHhHhhhhhh
Q 046859          253 ERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLP-----GRTENSIKNHWNATKRRQFSKR  317 (458)
Q Consensus       253 ~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~lp-----gRT~~qcKnRw~~l~rr~~sk~  317 (458)
                      +.|..+|..    ..||.||...|++++++|+-+|..|+.++.     +||-.++|.||..+.++....+
T Consensus        22 eEY~~~L~~----~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           22 QEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             HHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCC----CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            345556653    689999999999999999999999999973     7999999999999999876554

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.88  E-value=3e-05  Score=60.36  Aligned_cols=50  Identities=18%  Similarity=0.365  Sum_probs=44.9

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCcHHHHHhh-CCCCCHHHHHHHHHHH
Q 046859          260 RPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKR-LPGRTENSIKNHWNAT  309 (458)
Q Consensus       260 ~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~-lpgRT~~qcKnRw~~l  309 (458)
                      .|.+....||+||-.+..+++.+||..|..|++. +++||..+|...|..-
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            3667788999999999999999999999999995 8999999999888643

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.95  E-value=3.8e-06  Score=66.56  Aligned_cols=46  Identities=15%  Similarity=0.447  Sum_probs=43.0

Q ss_pred             CCChHHHHHHHHHHHHhCC---cHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859          267 IWSEEEDKALIEAHAEIGN---KWAEIAKRLPGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       267 ~WT~EED~~Llelv~k~G~---kWs~IAk~lpgRT~~qcKnRw~~l~rr~  313 (458)
                      .||.|||..|+..+++-|.   .|+.||+.| +||++|+++||..+++-.
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf   64 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLF   64 (70)
Confidence            5999999999999999997   799999999 999999999999998754

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.71  E-value=5.2e-06  Score=66.79  Aligned_cols=43  Identities=26%  Similarity=0.499  Sum_probs=38.7

Q ss_pred             cCCCChHHHHHHHHHHHHhCC----cHHHHHhhCCCCCHHHHHHHHH
Q 046859          265 KDIWSEEEDKALIEAHAEIGN----KWAEIAKRLPGRTENSIKNHWN  307 (458)
Q Consensus       265 k~~WT~EED~~Llelv~k~G~----kWs~IAk~lpgRT~~qcKnRw~  307 (458)
                      ...||.+|+.+|.+++..|+.    +|.+||..+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            457999999999999999984    7999999999999999999885

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.71  E-value=1.1e-05  Score=64.83  Aligned_cols=44  Identities=16%  Similarity=0.389  Sum_probs=38.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCc---ccchhhhccCCCCchhhhHhhhh
Q 046859          213 KGQWTTEEDRLLIRLVDQFGI---RKWSHIAQMLPGRIGKQCRERWH  256 (458)
Q Consensus       213 kG~WT~EED~~Ll~lV~~~G~---~nW~~IA~~LpgRt~~Qcr~RW~  256 (458)
                      .+.||.+|+++|.++...|+.   .+|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999973   37999999999999999999985

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.66  E-value=5.3e-05  Score=58.94  Aligned_cols=50  Identities=18%  Similarity=0.374  Sum_probs=45.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhc-cCCCCchhhhHhhhhhh
Q 046859          208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQ-MLPGRIGKQCRERWHNH  258 (458)
Q Consensus       208 kp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~-~LpgRt~~Qcr~RW~~~  258 (458)
                      .|.+....||+||-++..+.+.+|| ++|..|++ .|++|+..+|...|...
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            4677888999999999999999999 89999998 69999999999888643

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.38  E-value=0.00024  Score=59.58  Aligned_cols=48  Identities=23%  Similarity=0.299  Sum_probs=43.4

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859          264 KKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKR  311 (458)
Q Consensus       264 kk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~r  311 (458)
                      ....||+||.++..++...||.+|..||..||+||..+|...|...++
T Consensus        42 ~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~Kk   89 (94)
T 4a69_C           42 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKK   89 (94)
T ss_dssp             HTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcccc
Confidence            356899999999999999999999999999999999999998876543

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.36  E-value=9.1e-05  Score=61.79  Aligned_cols=49  Identities=22%  Similarity=0.437  Sum_probs=43.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCc--ccchhhhccCCCCchhhhHhhhhhhcc
Q 046859          212 VKGQWTTEEDRLLIRLVDQFGI--RKWSHIAQMLPGRIGKQCRERWHNHLR  260 (458)
Q Consensus       212 kkG~WT~EED~~Ll~lV~~~G~--~nW~~IA~~LpgRt~~Qcr~RW~~~L~  260 (458)
                      .--.||.|||+.|+..+++.|.  ..|..||+.|.+|+..|+++|++.+++
T Consensus        32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            3347999999999999999984  369999999999999999999987653

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.43  E-value=3.2e-05  Score=61.27  Aligned_cols=46  Identities=22%  Similarity=0.443  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCc--ccchhhhccCCCCchhhhHhhhhhhcc
Q 046859          214 GQWTTEEDRLLIRLVDQFGI--RKWSHIAQMLPGRIGKQCRERWHNHLR  260 (458)
Q Consensus       214 G~WT~EED~~Ll~lV~~~G~--~nW~~IA~~LpgRt~~Qcr~RW~~~L~  260 (458)
                      -.||.|||+.|+..+++.|.  .-|..||..| +|++.|+.+|++.+++
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            36999999999999999994  3699999999 9999999999988764

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.27  E-value=0.00053  Score=54.38  Aligned_cols=46  Identities=24%  Similarity=0.318  Sum_probs=41.6

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcHHHHHh-hCCCCCHHHHHHHHHHH
Q 046859          264 KKDIWSEEEDKALIEAHAEIGNKWAEIAK-RLPGRTENSIKNHWNAT  309 (458)
Q Consensus       264 kk~~WT~EED~~Llelv~k~G~kWs~IAk-~lpgRT~~qcKnRw~~l  309 (458)
                      ....||+||-.+..+++.+||..|..|++ .||+||..+|...|..-
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   53 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW   53 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            34689999999999999999999999999 58999999999988743

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.19  E-value=0.00021  Score=75.44  Aligned_cols=48  Identities=25%  Similarity=0.502  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcc
Q 046859          212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLR  260 (458)
Q Consensus       212 kkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~  260 (458)
                      ...+||.+|-.++++++.+|| ++|..||+.+++||..||+.+|.++-+
T Consensus       379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            357999999999999999999 899999999999999999999976433

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.17  E-value=0.0012  Score=61.78  Aligned_cols=101  Identities=18%  Similarity=0.227  Sum_probs=72.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC--cccchhhhcc--CCCCchhhhHhhhhhhc----------------------------
Q 046859          212 VKGQWTTEEDRLLIRLVDQFG--IRKWSHIAQM--LPGRIGKQCRERWHNHL----------------------------  259 (458)
Q Consensus       212 kkG~WT~EED~~Ll~lV~~~G--~~nW~~IA~~--LpgRt~~Qcr~RW~~~L----------------------------  259 (458)
                      ....||..|-..|++++.+||  ..+|..|+..  |.+|+...++..+..++                            
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~~   85 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPT   85 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CCE
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchh
Confidence            446799999999999999999  4679999864  67888766554322110                            


Q ss_pred             -----------------------ccc--------------------cccCCCChHHHHHHHHHHHHhC-CcHHHHHhh--
Q 046859          260 -----------------------RPD--------------------IKKDIWSEEEDKALIEAHAEIG-NKWAEIAKR--  293 (458)
Q Consensus       260 -----------------------~p~--------------------ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~--  293 (458)
                                             +..                    .-...||++||..|+..+.+|| ++|..|..-  
T Consensus        86 ~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~  165 (211)
T 4b4c_A           86 FRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPD  165 (211)
T ss_dssp             EEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSS
T ss_pred             hhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhChh
Confidence                                   000                    0122499999999999999999 999999763  


Q ss_pred             C--C--------C--CCHHHHHHHHHHHhHh
Q 046859          294 L--P--------G--RTENSIKNHWNATKRR  312 (458)
Q Consensus       294 l--p--------g--RT~~qcKnRw~~l~rr  312 (458)
                      |  .        .  ++...+..|-.++++-
T Consensus       166 l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~  196 (211)
T 4b4c_A          166 LSLTHKILPDDPDKKPQAKQLQTRADYLIKL  196 (211)
T ss_dssp             SSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred             cCccccccccccccCCChHHHHHHHHHHHHH
Confidence            2  1        2  4456788887777664

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.11  E-value=0.00038  Score=58.29  Aligned_cols=44  Identities=16%  Similarity=0.264  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhh
Q 046859          213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHN  257 (458)
Q Consensus       213 kG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~  257 (458)
                      ...||+||-++..+....|| ++|..||..||+||..+|-..|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence            45799999999999999999 899999999999999999998864

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.02  E-value=0.00063  Score=53.97  Aligned_cols=45  Identities=20%  Similarity=0.388  Sum_probs=40.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCcccchhhhc-cCCCCchhhhHhhhhh
Q 046859          212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQ-MLPGRIGKQCRERWHN  257 (458)
Q Consensus       212 kkG~WT~EED~~Ll~lV~~~G~~nW~~IA~-~LpgRt~~Qcr~RW~~  257 (458)
                      ....||+||-.+..+.+..|| ++|..|++ .||+|+..+|...|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            346899999999999999999 79999999 5999999999998864

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.94  E-value=0.00069  Score=55.16  Aligned_cols=49  Identities=16%  Similarity=0.517  Sum_probs=41.5

Q ss_pred             cCCCChHHHHHHHHHHHHhCC----------cHHHHHhhCC----CCCHHHHHHHHHHHhHhh
Q 046859          265 KDIWSEEEDKALIEAHAEIGN----------KWAEIAKRLP----GRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       265 k~~WT~EED~~Llelv~k~G~----------kWs~IAk~lp----gRT~~qcKnRw~~l~rr~  313 (458)
                      ...||.+|-..||+++.....          .|..||..|.    .||+.||+.+|..|.+..
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y   66 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF   66 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999976431          4999999862    699999999999998874

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.78  E-value=0.00041  Score=56.49  Aligned_cols=49  Identities=24%  Similarity=0.565  Sum_probs=40.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCc---------ccchhhhccCC----CCchhhhHhhhhhhcc
Q 046859          212 VKGQWTTEEDRLLIRLVDQFGI---------RKWSHIAQMLP----GRIGKQCRERWHNHLR  260 (458)
Q Consensus       212 kkG~WT~EED~~Ll~lV~~~G~---------~nW~~IA~~Lp----gRt~~Qcr~RW~~~L~  260 (458)
                      +...||.+|-.+|+.+......         ..|..||..|.    .||+.||+.+|.++..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k   64 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK   64 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            4568999999999999976431         15999998874    6999999999998764

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.64  E-value=0.0079  Score=61.70  Aligned_cols=101  Identities=22%  Similarity=0.298  Sum_probs=77.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCcccchhhhccCC-CCchhhhHhhhhhh----------------------------------
Q 046859          214 GQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP-GRIGKQCRERWHNH----------------------------------  258 (458)
Q Consensus       214 G~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp-gRt~~Qcr~RW~~~----------------------------------  258 (458)
                      +.||.-+=..++.++.+||..+-..||..|. |+|...|+....-+                                  
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4588888888899999999777889998887 88877776432100                                  


Q ss_pred             -------------c----ccc-cccCCCChHHHHHHHHHHHHhC----CcHHHHHhh------------CCCCCHHHHHH
Q 046859          259 -------------L----RPD-IKKDIWSEEEDKALIEAHAEIG----NKWAEIAKR------------LPGRTENSIKN  304 (458)
Q Consensus       259 -------------L----~p~-ikk~~WT~EED~~Llelv~k~G----~kWs~IAk~------------lpgRT~~qcKn  304 (458)
                                   |    .+. .++..||++||..|+-++.+||    +.|.+|-..            +..||+..|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                         0    000 0345799999999999999999    569999554            45699999999


Q ss_pred             HHHHHhHhhh
Q 046859          305 HWNATKRRQF  314 (458)
Q Consensus       305 Rw~~l~rr~~  314 (458)
                      |-..|++-..
T Consensus       284 Rc~tLi~~Ie  293 (374)
T 2y9y_A          284 RGNTLLQCLE  293 (374)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987654

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=96.36  E-value=0.0023  Score=53.70  Aligned_cols=56  Identities=18%  Similarity=0.274  Sum_probs=47.1

Q ss_pred             HHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCC-----CCchhhhHhhhhhhccc
Q 046859          201 KTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP-----GRIGKQCRERWHNHLRP  261 (458)
Q Consensus       201 ~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp-----gRt~~Qcr~RW~~~L~p  261 (458)
                      +-|..+|+.    ..||.||...|..|++++. -+|.-|+....     .||..++++||..+.+.
T Consensus        22 eEY~~~L~~----~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~   82 (93)
T 4iej_A           22 QEYQLYLHD----DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK   82 (93)
T ss_dssp             HHHHHHTCB----TTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCC----CCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHH
Confidence            455566653    6899999999999999999 89999998863     79999999999887653

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=92.09  E-value=0.45  Score=37.18  Aligned_cols=47  Identities=15%  Similarity=0.276  Sum_probs=40.6

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCc---HHHHHhhC--CCCCHHHHHHHHHHH
Q 046859          263 IKKDIWSEEEDKALIEAHAEIGNK---WAEIAKRL--PGRTENSIKNHWNAT  309 (458)
Q Consensus       263 ikk~~WT~EED~~Llelv~k~G~k---Ws~IAk~l--pgRT~~qcKnRw~~l  309 (458)
                      ..+-.||+|.-+..+++|.++|..   |..|.+.|  +|.|..+|+.+....
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            346689999999999999999954   88999885  799999999987764

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=90.87  E-value=0.34  Score=48.46  Aligned_cols=50  Identities=20%  Similarity=0.297  Sum_probs=43.6

Q ss_pred             ccCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859          264 KKDIWSEEEDKALIEAHAEIGN-KWAEIAKRLPGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       264 kk~~WT~EED~~Llelv~k~G~-kWs~IAk~lpgRT~~qcKnRw~~l~rr~  313 (458)
                      .-+.||..|....+.++.+||. .|..||..++|+|...|+..+.....+.
T Consensus       109 GF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry  159 (304)
T 1ofc_X          109 GFTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC  159 (304)
T ss_dssp             SCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred             hhcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence            3467999999999999999995 7999999999999999988777766554

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=89.97  E-value=0.38  Score=44.58  Aligned_cols=50  Identities=16%  Similarity=0.261  Sum_probs=41.9

Q ss_pred             cccCCCChHHHHHHHHHHHHhC---CcHHHHHhh--CCCCCHHHHHHHHHHHhHh
Q 046859          263 IKKDIWSEEEDKALIEAHAEIG---NKWAEIAKR--LPGRTENSIKNHWNATKRR  312 (458)
Q Consensus       263 ikk~~WT~EED~~Llelv~k~G---~kWs~IAk~--lpgRT~~qcKnRw~~l~rr  312 (458)
                      -....||+.|-..|+.++.+||   .+|..|+..  |.++|...++..+..++.+
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            3457899999999999999999   689999975  7899999999877776654

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=89.67  E-value=0.45  Score=37.16  Aligned_cols=49  Identities=14%  Similarity=0.279  Sum_probs=40.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCccc--chhhhccC--CCCchhhhHhhhhhh
Q 046859          210 NVVKGQWTTEEDRLLIRLVDQFGIRK--WSHIAQML--PGRIGKQCRERWHNH  258 (458)
Q Consensus       210 ~lkkG~WT~EED~~Ll~lV~~~G~~n--W~~IA~~L--pgRt~~Qcr~RW~~~  258 (458)
                      ...+-.||+|.-+..+.+|+..|..+  ++.|.+.|  +|.|..+|+.+.+.|
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            45567899999999999999999432  77888876  489999999988765

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=83.19  E-value=0.8  Score=45.02  Aligned_cols=27  Identities=30%  Similarity=0.687  Sum_probs=24.9

Q ss_pred             CCCChHHHHHHHHHHHHhC-CcHHHHHh
Q 046859          266 DIWSEEEDKALIEAHAEIG-NKWAEIAK  292 (458)
Q Consensus       266 ~~WT~EED~~Llelv~k~G-~kWs~IAk  292 (458)
                      ..|+.+||..|+..|.+|| +.|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4599999999999999999 99999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	458
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-23
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	9e-08
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-21
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	5e-11
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-21
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-11
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	6e-18
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-11
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	1e-15
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	3e-15
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	6e-15
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	7e-15
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	1e-07
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	9e-15
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	4e-08
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-14
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	6e-14
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	5e-13
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	8e-14
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	1e-12
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	4e-13
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	4e-10
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	9e-13
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	5e-07
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	2e-11
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	7e-11
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	2e-04

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.9 bits (228), Expect = 2e-23
 Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 213 KGQWTTEEDRLLIRLVDQFGIRK-----WSHIAQMLPGRIGKQCRERWHNHLRPDIKKDI 267
           K  +T EED  ++ +V +   R+     +  I+  +P   G   R R+  +L   ++   
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 268 WSEEEDKALIEAHAEIGN 285
             ++  K + +    +  
Sbjct: 61  EVDKFGKLVRDDDGNLIK 78

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (112), Expect = 9e-08
 Identities = 10/46 (21%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 268 WSEEEDKALIEAHAEIGNK------WAEIAKRLPGRTENSIKNHWN 307
           +++EED+ +++   +   +      + EI+  +P  T NSI++ + 
Sbjct: 4   FTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFR 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.6 bits (212), Expect = 1e-21
 Identities = 23/50 (46%), Positives = 28/50 (56%)

Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262
           K +WT EED  L +LV+Q G   W  IA  LP R   QC+ RW   L P+
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (134), Expect = 5e-11
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 265 KDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWN 307
           K  W+ EED+ L +   + G + W  IA  LP RT+   ++ W 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 44

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.5 bits (212), Expect = 1e-21
 Identities = 33/52 (63%), Positives = 43/52 (82%)

Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262
           ++KG WT EED+ LI+LV ++G ++WS IA+ L GRIGKQCRERWHNHL P+
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.7 bits (137), Expect = 2e-11
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 263 IKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWN 307
           + K  W++EED+ LI+   + G  +W+ IAK L GR     +  W+
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (186), Expect = 6e-18
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEE 272
             +WT EE  L  + + +F  R+W+ I++++  R   Q +     + +  +K  +  E  
Sbjct: 2   SVKWTIEEKELFEQGLAKF-GRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP 60

Query: 273 DK 274
           ++
Sbjct: 61  NQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 3e-11
 Identities = 11/46 (23%), Positives = 24/46 (52%)

Query: 268 WSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
           W+ EE +   +  A+ G +W +I+K +  RT   +K++     + +
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK 50

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.3 bits (167), Expect = 1e-15
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLR 260
           K  WT EEDR++ +   +    +W+ IA++LPGR     +  W++ +R
Sbjct: 1   KTSWTEEEDRIIYQAHKRL-GNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.5 bits (165), Expect = 3e-15
 Identities = 30/47 (63%), Positives = 39/47 (82%)

Query: 265 KDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKR 311
           K  W+EEED+ + +AH  +GN+WAEIAK LPGRT+N+IKNHWN+T R
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 67.8 bits (165), Expect = 6e-15
 Identities = 10/81 (12%), Positives = 27/81 (33%), Gaps = 10/81 (12%)

Query: 216 WTTEEDRLLIRLVDQFGIRKWSHIAQ----MLPGRIGKQCRERWHNHLRPDI------KK 265
           ++  E   L+  V+  G  +W  +          R     +++W   +          + 
Sbjct: 3   FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 266 DIWSEEEDKALIEAHAEIGNK 286
           +   ++    ++ AHA    +
Sbjct: 63  EPVPQDLLDRVLAAHAYWSQQ 83

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (162), Expect = 7e-15
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQ--MLPGRIGKQCRERWHNHLRPDI 263
           K +WT EE   +   V ++G   W+ I++      R     ++RW    R  +
Sbjct: 2   KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 1e-07
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 264 KKDIWSEEEDKALIEAHAEIGNK-WAEIAKR--LPGRTENSIKNHWNATKRR 312
           KK  W+ EE + +     + G   WA I+K      RT   IK+ W   KR 
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 52

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (161), Expect = 9e-15
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQ--MLPGRIGKQCRERWHNHLR 260
           +  W  EED+ L   V ++G   WS I        R     ++RW    +
Sbjct: 2   RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (112), Expect = 4e-08
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 264 KKDIWSEEEDKALIEAHAEIGNK-WAEIAKRLP--GRTENSIKNHWNATKR 311
           K+  W  EEDK L     + G   W++I        RT   +K+ W   K+
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (158), Expect = 2e-14
 Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 207 KKSNVVKGQWTTEEDRLLIRLVDQFG---IRKWSHIAQMLPGRIGKQCRERWH 256
           +++   +  WT  + +LL   + Q+       W  IA+ +P +  + C  R+ 
Sbjct: 6   ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYK 58

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (137), Expect = 2e-11
 Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 260 RPDIKKDIWSEEEDKALIEAHAEIG----NKWAEIAKRLPGRTENSIKNHW 306
           R    ++ W++ + K L  A  +      + W +IA+ +P +++      +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (156), Expect = 6e-14
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEE 272
             +WTTEE  L ++ + ++G R +  I+ ++  +   Q +  + N+ R     ++  E E
Sbjct: 5   NARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWE 63

Query: 273 DK 274
            +
Sbjct: 64  AE 65

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (150), Expect = 5e-13
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 268 WSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312
           W+ EE    ++A  + G  +  I+  +  ++   +KN +   +RR
Sbjct: 8   WTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (155), Expect = 8e-14
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 264 KKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312
             ++WSE+E +   E   +    +  IA  L  +T      ++  TK+ 
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 1e-12
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 199 VRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNH 258
           +   MK+ K   V    W+ +E         Q   + +  IA  L  +   +C   ++  
Sbjct: 4   MADPMKVYKDRQV-MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYLT 61

Query: 259 LR 260
            +
Sbjct: 62  KK 63

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 61.9 bits (150), Expect = 4e-13
 Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 216 WTTEEDRLLIRLVDQFGI---RKWSHIAQMLPGRIGKQCRERWHNHLRPDIKK 265
           W+ +E++   R +  +      +W+++A+ + GR  ++ ++ +   L  DIK 
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 53.4 bits (128), Expect = 4e-10
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 268 WSEEEDKALIEAHAEIG----NKWAEIAKRLPGRTENSIKNHWNATKR 311
           WS +E+KA   A A       ++WA +A+ + GRT   +K H+     
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE 51

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (146), Expect = 9e-13
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 216 WTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNH 258
           WT +E+  L+  V   G   W  +A  +  +  ++C + +  +
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY 46

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 5e-07
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 268 WSEEEDKALIEAHAEIGNK-WAEIAKRLPGRTENSIKNHWN 307
           W+ +E+ AL+EA  + G   W ++A ++  +T+   + H+ 
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.0 bits (140), Expect = 2e-11
 Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 240 AQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNK---WAEIAKRLPG 296
           A  LP                   K  +W+ E D+ ++    E G +   ++ I+++L  
Sbjct: 8   AGALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN 67

Query: 297 RTENSIKNHWNATKRRQ 313
           +T   + + +    +  
Sbjct: 68  KTPVEVSHRFRELMQLF 84

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.5 bits (136), Expect = 7e-11
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 207 KKSNVVKGQWTTEEDRLLIRLVDQFGIR--KWSHIAQMLPGRIGKQCRERWHNHLR 260
             +      WT E DR+++ +  + G +   +S I+Q L  +   +   R+   ++
Sbjct: 27  SSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 266 DIWSEEEDKALIEAHAEIGNKWAEIAKR-LPGRTENSIKNHWNATKRRQFSKRKCR 320
           + WS  E     EA  + G  + +I +  LP ++  SI  ++   K      ++ R
Sbjct: 2   EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQQKR 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	458
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.7
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.68
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.62
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.62
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.54
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.54
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.53
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.46
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.46
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.41
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.4
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.38
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.36
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.33
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.31
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.31
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.28
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.28
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.27
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.23
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.21
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.19
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.13
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.05
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.03
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.93
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.93
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.89
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.06
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.05
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.7
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.69
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.08
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.01
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.38
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.16
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.56
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.04
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	94.99
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.08
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	89.7
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	84.45
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	80.4

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.9e-19  Score=147.58  Aligned_cols=70  Identities=20%  Similarity=0.344  Sum_probs=64.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCcc-----cchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHH
Q 046859          213 KGQWTTEEDRLLIRLVDQFGIR-----KWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAE  282 (458)
Q Consensus       213 kG~WT~EED~~Ll~lV~~~G~~-----nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k  282 (458)
                      |+.||+|||++|+++|+++|..     +|..||..|||||++|||+||+++|+|.++++.||++||.+|++.+..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~   75 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   75 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhc
Confidence            6899999999999999999954     399999999999999999999999999999999999999998776543

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.5e-17  Score=123.99  Aligned_cols=52  Identities=63%  Similarity=1.273  Sum_probs=49.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccc
Q 046859          211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD  262 (458)
Q Consensus       211 lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~  262 (458)
                      ++||+||+|||++|+++|.++|..+|..||+.|++||+.||++||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999889999999999999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.3e-16  Score=115.26  Aligned_cols=47  Identities=64%  Similarity=1.170  Sum_probs=45.1

Q ss_pred             cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859          265 KDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKR  311 (458)
Q Consensus       265 k~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~r  311 (458)
                      |++||+|||++|+++|.+||++|+.||+.|||||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.5e-16  Score=117.54  Aligned_cols=50  Identities=46%  Similarity=0.894  Sum_probs=48.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccc
Q 046859          213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD  262 (458)
Q Consensus       213 kG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~  262 (458)
                      |++||+|||++|+++|.++|.++|.+||..|||||+.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            67999999999999999999889999999999999999999999999984

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=2.7e-15  Score=111.61  Aligned_cols=50  Identities=32%  Similarity=0.671  Sum_probs=46.6

Q ss_pred             cccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859          263 IKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRR  312 (458)
Q Consensus       263 ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~rr  312 (458)
                      +.||+||+|||++|+++|.+|| ++|+.||+.|+|||+.||++||+..++.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4689999999999999999999 6899999999999999999999987653

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.54  E-value=2.6e-15  Score=121.72  Aligned_cols=72  Identities=14%  Similarity=0.395  Sum_probs=61.7

Q ss_pred             CCCHHHHHHHHHHHHHhCcccchhhhcc----CCCCchhhhHhhhhhhc-----ccccccCCCChHHHHHHHHHHHHhCC
Q 046859          215 QWTTEEDRLLIRLVDQFGIRKWSHIAQM----LPGRIGKQCRERWHNHL-----RPDIKKDIWSEEEDKALIEAHAEIGN  285 (458)
Q Consensus       215 ~WT~EED~~Ll~lV~~~G~~nW~~IA~~----LpgRt~~Qcr~RW~~~L-----~p~ikk~~WT~EED~~Llelv~k~G~  285 (458)
                      +||+|||++|+.+|++||..+|..|++.    +++||+.||++||+++|     ++..+++.|+++|   |+..|.+++.
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~~   78 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAHA   78 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHHH
Confidence            8999999999999999998899999975    67999999999999988     4667788898876   5666666667


Q ss_pred             cHHH
Q 046859          286 KWAE  289 (458)
Q Consensus       286 kWs~  289 (458)
                      +|++
T Consensus        79 ~wsq   82 (83)
T d2ckxa1          79 YWSQ   82 (83)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8864

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=2.6e-15  Score=109.58  Aligned_cols=47  Identities=36%  Similarity=0.909  Sum_probs=44.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcc
Q 046859          213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLR  260 (458)
Q Consensus       213 kG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~  260 (458)
                      |++||+|||++|+++|+++| .+|+.||..|||||+.||++||+++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G-~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHh-hHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999 789999999999999999999999874

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.5e-14  Score=108.67  Aligned_cols=53  Identities=25%  Similarity=0.526  Sum_probs=48.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCcccchhhhcc--CCCCchhhhHhhhhhhcccccc
Q 046859          212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQM--LPGRIGKQCRERWHNHLRPDIK  264 (458)
Q Consensus       212 kkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~--LpgRt~~Qcr~RW~~~L~p~ik  264 (458)
                      ++++||+|||++|+++|++||..+|..||+.  +++||+.||++||++++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            4789999999999999999998899999987  5699999999999999988764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=3.9e-14  Score=104.30  Aligned_cols=48  Identities=31%  Similarity=0.618  Sum_probs=44.7

Q ss_pred             cCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859          265 KDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRR  312 (458)
Q Consensus       265 k~~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~rr  312 (458)
                      |+.||+|||++|+++|.+|| ++|.+||..|||||+.||++||...+..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 6899999999999999999999987753

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.9e-14  Score=104.22  Aligned_cols=49  Identities=27%  Similarity=0.497  Sum_probs=44.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCcccchhhhccCC--CCchhhhHhhhhhhcc
Q 046859          212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP--GRIGKQCRERWHNHLR  260 (458)
Q Consensus       212 kkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp--gRt~~Qcr~RW~~~L~  260 (458)
                      ++++||+|||++|+++|.+||..+|..||+.++  +||+.||++||+++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999889999998754  9999999999998653

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.1e-13  Score=101.16  Aligned_cols=48  Identities=31%  Similarity=0.604  Sum_probs=43.8

Q ss_pred             ccCCCChHHHHHHHHHHHHhC-CcHHHHHhhC--CCCCHHHHHHHHHHHhH
Q 046859          264 KKDIWSEEEDKALIEAHAEIG-NKWAEIAKRL--PGRTENSIKNHWNATKR  311 (458)
Q Consensus       264 kk~~WT~EED~~Llelv~k~G-~kWs~IAk~l--pgRT~~qcKnRw~~l~r  311 (458)
                      ++++||+|||+.|+++|.+|| ++|+.||+.+  .|||+.||++||+.+.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999999 5899999985  49999999999998764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.7e-13  Score=101.62  Aligned_cols=50  Identities=34%  Similarity=0.595  Sum_probs=45.7

Q ss_pred             ccCCCChHHHHHHHHHHHHhC-CcHHHHHhh--CCCCCHHHHHHHHHHHhHhh
Q 046859          264 KKDIWSEEEDKALIEAHAEIG-NKWAEIAKR--LPGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       264 kk~~WT~EED~~Llelv~k~G-~kWs~IAk~--lpgRT~~qcKnRw~~l~rr~  313 (458)
                      ++.+||+|||++|+++|.+|| ++|+.||+.  +++||+.||++||+.+++..
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            468999999999999999999 689999998  56999999999999988764

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.5e-13  Score=100.10  Aligned_cols=45  Identities=20%  Similarity=0.564  Sum_probs=42.7

Q ss_pred             CCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhc
Q 046859          215 QWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHL  259 (458)
Q Consensus       215 ~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L  259 (458)
                      .||+|||++|+++|+++|.++|..||+.|++||+.||+.||.++.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999889999999999999999999998863

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.6e-13  Score=105.53  Aligned_cols=59  Identities=24%  Similarity=0.458  Sum_probs=53.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHH
Q 046859          213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEE  272 (458)
Q Consensus       213 kG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EE  272 (458)
                      ...||+|||++|++++..+| .+|..||..||+||+.||++||++++++..+.+.+...+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            46799999999999999999 899999999999999999999999998888777766544

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.3e-12  Score=100.32  Aligned_cols=49  Identities=22%  Similarity=0.386  Sum_probs=46.2

Q ss_pred             CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhhh
Q 046859          266 DIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQF  314 (458)
Q Consensus       266 ~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~  314 (458)
                      ..||+|||.+|+++|.+||.+|..||..||+||..||++||..++++..
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~   51 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV   51 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999999999888754

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=5.3e-13  Score=108.81  Aligned_cols=51  Identities=22%  Similarity=0.456  Sum_probs=47.8

Q ss_pred             cCCCChHHHHHHHHHHHHhCCc------HHHHHhhCCCCCHHHHHHHHHHHhHhhhh
Q 046859          265 KDIWSEEEDKALIEAHAEIGNK------WAEIAKRLPGRTENSIKNHWNATKRRQFS  315 (458)
Q Consensus       265 k~~WT~EED~~Llelv~k~G~k------Ws~IAk~lpgRT~~qcKnRw~~l~rr~~s  315 (458)
                      |+.||+|||++|+++|.+||.+      |++||+.|||||+.|||+||+..+.+.+.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~   57 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   57 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCcccc
Confidence            5799999999999999999965      99999999999999999999999998763

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.6e-12  Score=98.77  Aligned_cols=51  Identities=22%  Similarity=0.534  Sum_probs=46.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCcc---cchhhhccCCCCchhhhHhhhhh
Q 046859          207 KKSNVVKGQWTTEEDRLLIRLVDQFGIR---KWSHIAQMLPGRIGKQCRERWHN  257 (458)
Q Consensus       207 Lkp~lkkG~WT~EED~~Ll~lV~~~G~~---nW~~IA~~LpgRt~~Qcr~RW~~  257 (458)
                      ..+...+++||+|||++|+++|..||..   +|.+||..|||||+.||+.||..
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4567788999999999999999999954   69999999999999999999975

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2e-12  Score=93.91  Aligned_cols=43  Identities=26%  Similarity=0.617  Sum_probs=40.7

Q ss_pred             CCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHH
Q 046859          267 IWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNAT  309 (458)
Q Consensus       267 ~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l  309 (458)
                      .||+|||.+|+++|.+|| ++|..||+.|+|||+.||+.||...
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 6799999999999999999999864

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.9e-12  Score=97.29  Aligned_cols=50  Identities=18%  Similarity=0.405  Sum_probs=45.3

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCC----cHHHHHhhCCCCCHHHHHHHHHHH
Q 046859          260 RPDIKKDIWSEEEDKALIEAHAEIGN----KWAEIAKRLPGRTENSIKNHWNAT  309 (458)
Q Consensus       260 ~p~ikk~~WT~EED~~Llelv~k~G~----kWs~IAk~lpgRT~~qcKnRw~~l  309 (458)
                      .+...+++||+|||.+|+++|.+||.    +|.+||..|||||..||++||+.|
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            34567789999999999999999995    699999999999999999999865

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=3.8e-12  Score=105.06  Aligned_cols=75  Identities=16%  Similarity=0.253  Sum_probs=67.3

Q ss_pred             hccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCc---HHHHHhhCCCCCHHHHHHHHHHHhHhhh
Q 046859          240 AQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNK---WAEIAKRLPGRTENSIKNHWNATKRRQF  314 (458)
Q Consensus       240 A~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~k---Ws~IAk~lpgRT~~qcKnRw~~l~rr~~  314 (458)
                      |..+|..+..+++.++.+...+......||.|||..|++.++++|.+   |..||+.|+|||++||++||..+++...
T Consensus         8 a~~~p~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~   85 (95)
T d1ug2a_           8 AGALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH   85 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            44567788888888888888888888899999999999999999987   9999999999999999999999998764

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.21  E-value=1.1e-11  Score=94.89  Aligned_cols=48  Identities=31%  Similarity=0.577  Sum_probs=43.9

Q ss_pred             CCCChHHHHHHHHHHHHhCC----cHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859          266 DIWSEEEDKALIEAHAEIGN----KWAEIAKRLPGRTENSIKNHWNATKRRQ  313 (458)
Q Consensus       266 ~~WT~EED~~Llelv~k~G~----kWs~IAk~lpgRT~~qcKnRw~~l~rr~  313 (458)
                      .+||+|||.+|++++.+||.    +|.+||..|||||..||++||+.+++..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~di   53 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   53 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            47999999999999999995    5999999999999999999998887653

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.19  E-value=2.6e-11  Score=97.74  Aligned_cols=49  Identities=27%  Similarity=0.466  Sum_probs=44.8

Q ss_pred             CCChHHHHHHHHHHHHhC-CcHHHHHhh----CCCCCHHHHHHHHHHHhHhhhh
Q 046859          267 IWSEEEDKALIEAHAEIG-NKWAEIAKR----LPGRTENSIKNHWNATKRRQFS  315 (458)
Q Consensus       267 ~WT~EED~~Llelv~k~G-~kWs~IAk~----lpgRT~~qcKnRw~~l~rr~~s  315 (458)
                      +||.|||+.|+++|.+|| ++|+.|++.    +++||+.||++||+.+++....
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~   55 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI   55 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhcc
Confidence            799999999999999999 589999986    6899999999999999986543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.13  E-value=1.1e-11  Score=94.87  Aligned_cols=45  Identities=16%  Similarity=0.536  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCcc---cchhhhccCCCCchhhhHhhhhhh
Q 046859          214 GQWTTEEDRLLIRLVDQFGIR---KWSHIAQMLPGRIGKQCRERWHNH  258 (458)
Q Consensus       214 G~WT~EED~~Ll~lV~~~G~~---nW~~IA~~LpgRt~~Qcr~RW~~~  258 (458)
                      .+||+|||.+|+++++.||..   +|.+||..|||||+.||++||..+
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L   49 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL   49 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            479999999999999999954   499999999999999999999654

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=9e-11  Score=90.10  Aligned_cols=48  Identities=21%  Similarity=0.416  Sum_probs=44.8

Q ss_pred             cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859          265 KDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR  312 (458)
Q Consensus       265 k~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr  312 (458)
                      ...||++||++|++++.+||.+|..||..|||||..+|++||....++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            467999999999999999999999999999999999999999987654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.4e-11  Score=91.78  Aligned_cols=49  Identities=22%  Similarity=0.281  Sum_probs=44.4

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859          263 IKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKR  311 (458)
Q Consensus       263 ikk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~r  311 (458)
                      ....+||+||+++|++++.+||.+|..||..|||||..||++||....+
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~kk   63 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKK   63 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHHC
Confidence            3457899999999999999999999999999999999999999986543

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.4e-10  Score=88.45  Aligned_cols=49  Identities=16%  Similarity=0.236  Sum_probs=44.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhc
Q 046859          210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHL  259 (458)
Q Consensus       210 ~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L  259 (458)
                      .....+||+||+++|++++..|| .+|..||..|||||..||+.+|....
T Consensus        14 ~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          14 RQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            34456899999999999999999 89999999999999999999998644

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.8e-10  Score=87.31  Aligned_cols=47  Identities=26%  Similarity=0.513  Sum_probs=43.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcc
Q 046859          213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLR  260 (458)
Q Consensus       213 kG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~  260 (458)
                      +.+||++||++|++++..|| .+|..||..|||||..||++||.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            46799999999999999999 889999999999999999999998754

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=1.3e-10  Score=95.81  Aligned_cols=63  Identities=19%  Similarity=0.317  Sum_probs=52.2

Q ss_pred             HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCccc--chhhhccCCCCchhhhHhhhhhhcc
Q 046859          198 SVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRK--WSHIAQMLPGRIGKQCRERWHNHLR  260 (458)
Q Consensus       198 qCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~n--W~~IA~~LpgRt~~Qcr~RW~~~L~  260 (458)
                      +.+.++.+..+.......||.|||++|++.++++|...  |..||+.|+||++.|||+||+.+++
T Consensus        18 ~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~   82 (95)
T d1ug2a_          18 TVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             CCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             ccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            33344445566677788999999999999999999432  9999999999999999999987664

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=3e-06  Score=63.09  Aligned_cols=46  Identities=26%  Similarity=0.379  Sum_probs=41.5

Q ss_pred             CCCChHHHHHHHHHHHHhCCcHHHHHhh-CCCCCHHHHHHHHHHHhH
Q 046859          266 DIWSEEEDKALIEAHAEIGNKWAEIAKR-LPGRTENSIKNHWNATKR  311 (458)
Q Consensus       266 ~~WT~EED~~Llelv~k~G~kWs~IAk~-lpgRT~~qcKnRw~~l~r  311 (458)
                      ..||+||-.+..+++..||.+|..|++. +|+||..+|.+.|....+
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~Kk   48 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKT   48 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999999999986 699999999999975433

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.6e-06  Score=64.09  Aligned_cols=45  Identities=24%  Similarity=0.498  Sum_probs=41.4

Q ss_pred             CCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859          266 DIWSEEEDKALIEAHAEIG----NKWAEIAKRLPGRTENSIKNHWNATKR  311 (458)
Q Consensus       266 ~~WT~EED~~Llelv~k~G----~kWs~IAk~lpgRT~~qcKnRw~~l~r  311 (458)
                      ..||.||+.+|.+++.+|.    .+|.+||..+ |||..+|..||+.+..
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e   50 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   50 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence            4799999999999999996    6799999999 9999999999987754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=1.6e-05  Score=59.01  Aligned_cols=43  Identities=21%  Similarity=0.407  Sum_probs=39.6

Q ss_pred             CCCHHHHHHHHHHHHHhCcccchhhhcc-CCCCchhhhHhhhhhh
Q 046859          215 QWTTEEDRLLIRLVDQFGIRKWSHIAQM-LPGRIGKQCRERWHNH  258 (458)
Q Consensus       215 ~WT~EED~~Ll~lV~~~G~~nW~~IA~~-LpgRt~~Qcr~RW~~~  258 (458)
                      .||+||-.+..+.+..|| ++|..|++. +|+||..||.+.|...
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            699999999999999999 899999975 7999999999998753

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.1e-05  Score=60.64  Aligned_cols=45  Identities=27%  Similarity=0.401  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCc---ccchhhhccCCCCchhhhHhhhhhhc
Q 046859          214 GQWTTEEDRLLIRLVDQFGI---RKWSHIAQMLPGRIGKQCRERWHNHL  259 (458)
Q Consensus       214 G~WT~EED~~Ll~lV~~~G~---~nW~~IA~~LpgRt~~Qcr~RW~~~L  259 (458)
                      +.||++|+.+|.+++.+|..   .+|.+||..+ ||+..+|..|+..+-
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            57999999999999999963   4699999999 999999999998654

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.0008  Score=47.31  Aligned_cols=46  Identities=20%  Similarity=0.400  Sum_probs=41.3

Q ss_pred             cCCCChHHHHHHHHHHHHhCCcHHHHHhhC---CCCCHHHHHHHHHHHh
Q 046859          265 KDIWSEEEDKALIEAHAEIGNKWAEIAKRL---PGRTENSIKNHWNATK  310 (458)
Q Consensus       265 k~~WT~EED~~Llelv~k~G~kWs~IAk~l---pgRT~~qcKnRw~~l~  310 (458)
                      |..||.||-.-|...|+++|+.|..|--.+   |||+..++..+|..++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            457999999999999999999999998775   8999999999998763

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.0005  Score=51.31  Aligned_cols=47  Identities=21%  Similarity=0.388  Sum_probs=40.5

Q ss_pred             cCCCChHHHHHHHHHHHHhC--------Cc-HHHHHh-hCCCCCHHHHHHHHHHHhH
Q 046859          265 KDIWSEEEDKALIEAHAEIG--------NK-WAEIAK-RLPGRTENSIKNHWNATKR  311 (458)
Q Consensus       265 k~~WT~EED~~Llelv~k~G--------~k-Ws~IAk-~lpgRT~~qcKnRw~~l~r  311 (458)
                      |.++|.|||+.|++.|+++.        +. |..+++ .+|.+|-.+.|+||...+|
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999874        22 999996 5799999999999987664

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0021  Score=47.83  Aligned_cols=48  Identities=19%  Similarity=0.374  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCc--------ccchhhhc-cCCCCchhhhHhhhhhhcc
Q 046859          213 KGQWTTEEDRLLIRLVDQFGI--------RKWSHIAQ-MLPGRIGKQCRERWHNHLR  260 (458)
Q Consensus       213 kG~WT~EED~~Ll~lV~~~G~--------~nW~~IA~-~LpgRt~~Qcr~RW~~~L~  260 (458)
                      |.+||.|||+.|++.|.++..        .=|...++ .++.+|-.+-|+||.++|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            568999999999999998742        12999985 6799999999999998875

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.16  E-value=0.0057  Score=46.06  Aligned_cols=46  Identities=15%  Similarity=0.315  Sum_probs=39.3

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcH---HHHHhh--CCCCCHHHHHHHHHHH
Q 046859          264 KKDIWSEEEDKALIEAHAEIGNKW---AEIAKR--LPGRTENSIKNHWNAT  309 (458)
Q Consensus       264 kk~~WT~EED~~Llelv~k~G~kW---s~IAk~--lpgRT~~qcKnRw~~l  309 (458)
                      .+-.||+||-.+.++++..+|..|   ..|...  ++|+|..+|+.+....
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            356799999999999999999887   577776  5999999999887665

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.56  E-value=0.0095  Score=44.80  Aligned_cols=48  Identities=15%  Similarity=0.281  Sum_probs=38.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCcccc--hhhhcc--CCCCchhhhHhhhhhh
Q 046859          211 VVKGQWTTEEDRLLIRLVDQFGIRKW--SHIAQM--LPGRIGKQCRERWHNH  258 (458)
Q Consensus       211 lkkG~WT~EED~~Ll~lV~~~G~~nW--~~IA~~--LpgRt~~Qcr~RW~~~  258 (458)
                      ..+-.||+||-+..+.++..+|..+|  ..|.+.  ++++|..||+.+.+.|
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            34567999999999999999995444  467665  5799999999988765

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.025  Score=43.04  Aligned_cols=52  Identities=23%  Similarity=0.387  Sum_probs=44.1

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCc----HHHHHhhCCCCCHHHHHHHHHHHhHhhhh
Q 046859          264 KKDIWSEEEDKALIEAHAEIGNK----WAEIAKRLPGRTENSIKNHWNATKRRQFS  315 (458)
Q Consensus       264 kk~~WT~EED~~Llelv~k~G~k----Ws~IAk~lpgRT~~qcKnRw~~l~rr~~s  315 (458)
                      ..+.|+++|=++|-.++..+...    |..+|..+..||...|..+|..-.+.+-+
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~~s   62 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGS   62 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCC
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcccccc
Confidence            34689999999999999988743    99999999999999999999887655433

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.99  E-value=0.014  Score=40.83  Aligned_cols=44  Identities=27%  Similarity=0.502  Sum_probs=38.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCcccchhhhccCC---CCchhhhHhhhhhh
Q 046859          214 GQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP---GRIGKQCRERWHNH  258 (458)
Q Consensus       214 G~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp---gRt~~Qcr~RW~~~  258 (458)
                      ..||.||-.-|..-|+++| ..|..|-=..|   ||+..+...+|+.+
T Consensus         2 knft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            4699999999999999999 89999986664   99999998888764

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.056  Score=41.05  Aligned_cols=52  Identities=17%  Similarity=0.338  Sum_probs=44.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCc---ccchhhhccCCCCchhhhHhhhhhhcccc
Q 046859          211 VVKGQWTTEEDRLLIRLVDQFGI---RKWSHIAQMLPGRIGKQCRERWHNHLRPD  262 (458)
Q Consensus       211 lkkG~WT~EED~~Ll~lV~~~G~---~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~  262 (458)
                      ...+.|+++|-.+|-.++.....   +-|..||..+..|+...|...|...++..
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcccc
Confidence            45678999999999999988763   35999999999999999999998877543

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.70  E-value=0.26  Score=41.40  Aligned_cols=65  Identities=20%  Similarity=0.287  Sum_probs=49.0

Q ss_pred             hhhHhhhhhhc--ccccccCCCChHHHHHHHHHHHHhC-Cc---HHHHHhh------------CCCCCHHHHHHHHHHHh
Q 046859          249 KQCRERWHNHL--RPDIKKDIWSEEEDKALIEAHAEIG-NK---WAEIAKR------------LPGRTENSIKNHWNATK  310 (458)
Q Consensus       249 ~Qcr~RW~~~L--~p~ikk~~WT~EED~~Llelv~k~G-~k---Ws~IAk~------------lpgRT~~qcKnRw~~l~  310 (458)
                      .+|+.-|..+-  -+..++..+|+|||.-|+-++.+|| ++   |..|...            +..||+..|..|-++++
T Consensus        31 ~~y~~P~~eL~i~y~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi  110 (128)
T d1ofcx2          31 SRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI  110 (128)
T ss_dssp             HTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred             HHhcChHHHhhhhccccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHH
Confidence            45555565432  1334555799999999999999999 55   9998543            35799999999999988


Q ss_pred             Hhh
Q 046859          311 RRQ  313 (458)
Q Consensus       311 rr~  313 (458)
                      +-.
T Consensus       111 ~~i  113 (128)
T d1ofcx2         111 TLI  113 (128)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.45  E-value=1.3  Score=31.53  Aligned_cols=45  Identities=20%  Similarity=0.359  Sum_probs=38.5

Q ss_pred             CCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859          267 IWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKR  311 (458)
Q Consensus       267 ~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~r  311 (458)
                      .|+.-|=..++.+..+|| ..-..||..+.|+|..+|+...+.--+
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~   46 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE   46 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            499999999999999999 579999999999999998876554433

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.40  E-value=1.1  Score=31.88  Aligned_cols=41  Identities=20%  Similarity=0.366  Sum_probs=37.0

Q ss_pred             CCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhh
Q 046859          215 QWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERW  255 (458)
Q Consensus       215 ~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW  255 (458)
                      .|+.-|=..++++..+||..+-..||..|.|+|...++...
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~   41 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN   41 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHH
Confidence            49999999999999999977899999999999999987643