Citrus Sinensis ID: 046900
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 442 | 2.2.26 [Sep-21-2011] | |||||||
| Q9STR4 | 447 | 1-aminocyclopropane-1-car | yes | no | 0.970 | 0.959 | 0.796 | 0.0 | |
| Q00257 | 475 | 1-aminocyclopropane-1-car | N/A | no | 0.952 | 0.886 | 0.611 | 1e-161 | |
| Q9T065 | 469 | 1-aminocyclopropane-1-car | no | no | 0.952 | 0.897 | 0.614 | 1e-160 | |
| P37821 | 473 | 1-aminocyclopropane-1-car | N/A | no | 0.952 | 0.890 | 0.598 | 1e-158 | |
| Q42881 | 469 | 1-aminocyclopropane-1-car | N/A | no | 0.954 | 0.899 | 0.605 | 1e-157 | |
| Q43309 | 474 | 1-aminocyclopropane-1-car | no | no | 0.947 | 0.883 | 0.603 | 1e-156 | |
| Q9M2Y8 | 470 | 1-aminocyclopropane-1-car | no | no | 0.968 | 0.910 | 0.592 | 1e-156 | |
| P18485 | 485 | 1-aminocyclopropane-1-car | N/A | no | 0.952 | 0.868 | 0.569 | 1e-155 | |
| Q37001 | 470 | 1-aminocyclopropane-1-car | no | no | 0.968 | 0.910 | 0.587 | 1e-155 | |
| Q9S9U6 | 460 | 1-aminocyclopropane-1-car | no | no | 0.954 | 0.917 | 0.588 | 1e-154 |
| >sp|Q9STR4|1A17_ARATH 1-aminocyclopropane-1-carboxylate synthase 7 OS=Arabidopsis thaliana GN=ACS7 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/432 (79%), Positives = 387/432 (89%), Gaps = 3/432 (0%)
Query: 11 SVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLE 70
+V LS+VAVS+THGEDSPYFAGWKAYDENPY+ES NPSGVIQMGLAENQVSFDLLE YLE
Sbjct: 15 NVELSRVAVSDTHGEDSPYFAGWKAYDENPYDESHNPSGVIQMGLAENQVSFDLLETYLE 74
Query: 71 QQ-PEASTWG-KGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAG 128
++ PE S WG KGAPGFRENALFQDYHGLK+FRQAMASFMEQIRGG+A+FD +RIV+TAG
Sbjct: 75 KKNPEGSMWGSKGAPGFRENALFQDYHGLKTFRQAMASFMEQIRGGKARFDPDRIVLTAG 134
Query: 129 ATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALE 188
ATAANELLTFILADP DALLVPTPYYPGFDRDLRWRTG+KIVPIHCDSSN+FQITP+ALE
Sbjct: 135 ATAANELLTFILADPNDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNHFQITPEALE 194
Query: 189 AAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS 248
+AY+ A ++RVRGVLITNPSNPLGAT+Q+ VLE+LLDF RKNIHLVSDEIYSGS F
Sbjct: 195 SAYQTARDANIRVRGVLITNPSNPLGATVQKKVLEDLLDFCVRKNIHLVSDEIYSGSVFH 254
Query: 249 SSEFVSIAEILE-ARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF 307
+SEF S+AEI+E ERVHIVYSLSKDLGLPGFRVGTIYSYND VV TARRMSSF
Sbjct: 255 ASEFTSVAEIVENIDDVSVKERVHIVYSLSKDLGLPGFRVGTIYSYNDNVVRTARRMSSF 314
Query: 308 TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCW 367
TL+SSQTQ++LASMLS+++FTE YI+ NRERL++RY I+EGL+ AGIECLKGNAGLFCW
Sbjct: 315 TLVSSQTQHMLASMLSDEEFTEKYIRINRERLRRRYDTIVEGLKKAGIECLKGNAGLFCW 374
Query: 368 MNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVAL 427
MNL LLE++T++GEL LWD +L E+ LNISPGSSCHCSE GWFRVCFANMSE TLE+AL
Sbjct: 375 MNLGFLLEKKTKDGELQLWDVILKELNLNISPGSSCHCSEVGWFRVCFANMSENTLEIAL 434
Query: 428 KRIHNFMQKRER 439
KRIH FM +R R
Sbjct: 435 KRIHEFMDRRRR 446
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 4 |
| >sp|Q00257|1A12_CUCMA 1-aminocyclopropane-1-carboxylate synthase CMA101 OS=Cucurbita maxima GN=ACS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 569 bits (1467), Expect = e-161, Method: Compositional matrix adjust.
Identities = 260/425 (61%), Positives = 335/425 (78%), Gaps = 4/425 (0%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LS A +HG+DS YF GW+AY+ NP+ ++NP+G+IQMGLAENQ+SFDLLE +L + P
Sbjct: 4 LSTKATCNSHGQDSSYFLGWEAYENNPFHHTSNPNGIIQMGLAENQLSFDLLESWLSKNP 63
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
+A+++ + G FRE ALFQDYHGL +F++A+ FM +IRG + F+ N IV+TAGAT+A
Sbjct: 64 DAASFKRDGKSIFRELALFQDYHGLPAFKKALVEFMAEIRGNKVSFEANNIVLTAGATSA 123
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE L F LA+ GDA L+PTPYYPGFDRDL+WRTG++IVPIHC SSN FQIT ALE AYK
Sbjct: 124 NETLMFCLAEAGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITQSALEQAYK 183
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252
+A+++++RV+GVL+TNPSNPLG T+ R L + DF T K IHL+SDEIYSG+ F S F
Sbjct: 184 DAQTRNLRVKGVLVTNPSNPLGTTMNRDELNLVFDFITSKGIHLISDEIYSGTVFGSPGF 243
Query: 253 VSIAEILEARQYKDSE---RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL 309
VS E+L+ R +D E RVHIVYSLSKDLGLPGFRVG IYS +D VV A +MSSF L
Sbjct: 244 VSAMEVLKERSSEDEEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL 303
Query: 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMN 369
+SSQTQYLL++MLS+KKFT +YI N++RL++R +M++ GL+ AGI CL NAGLFCW++
Sbjct: 304 VSSQTQYLLSAMLSDKKFTISYISENQKRLKQRQKMLVSGLQKAGINCLDSNAGLFCWVD 363
Query: 370 LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKR 429
+ LLE E EL LW +++EV LNISPGSSCHC+EPGWFRVCFANMSE TL++A++R
Sbjct: 364 MRHLLESDKFESELELWKKIVYEVGLNISPGSSCHCTEPGWFRVCFANMSESTLKLAVRR 423
Query: 430 IHNFM 434
+ +F+
Sbjct: 424 LKSFV 428
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Cucurbita maxima (taxid: 3661) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q9T065|1A18_ARATH 1-aminocyclopropane-1-carboxylate synthase 8 OS=Arabidopsis thaliana GN=ACS8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 566 bits (1458), Expect = e-160, Method: Compositional matrix adjust.
Identities = 261/425 (61%), Positives = 339/425 (79%), Gaps = 4/425 (0%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LSK A THG+DS YF GW+ Y++NPY+E NP G+IQMGLAENQ+SFDL+E +L + P
Sbjct: 4 LSKKASCNTHGQDSSYFWGWEEYEKNPYDEIKNPDGIIQMGLAENQLSFDLIESWLAKNP 63
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
+A+ + + G FRE ALFQDYHGL SF+ AMA FM + RG R F+ N++V+TAGAT A
Sbjct: 64 DAANFQREGQSIFRELALFQDYHGLPSFKNAMADFMSENRGNRVSFNPNKLVLTAGATPA 123
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE L F LADPGDA L+PTPYYPGFDRDL+WRTG +IVPI C S+N F+IT ALE AY+
Sbjct: 124 NETLMFCLADPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIQCKSANGFRITKVALEEAYE 183
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252
+A+ +++V+GVLITNPSNPLG T R+ L LLDF +RK IHL+SDEIYSG+ F++ F
Sbjct: 184 QAQKLNLKVKGVLITNPSNPLGTTTTRTELNHLLDFISRKKIHLISDEIYSGTVFTNPGF 243
Query: 253 VSIAEILEARQYKDS---ERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL 309
+S+ E+L+ R+ +++ +RVHIVYSLSKDLGLPGFRVG IYS +D VV+ A +MSSF L
Sbjct: 244 ISVMEVLKDRKLENTDVFDRVHIVYSLSKDLGLPGFRVGVIYSNDDFVVSAATKMSSFGL 303
Query: 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMN 369
ISSQTQYLL+++LS+K FT+NY++ N+ RL+ R++ ++ GL +AGIECLK NAGLFCW++
Sbjct: 304 ISSQTQYLLSALLSDKTFTKNYLEENQIRLKNRHKKLVSGLEAAGIECLKSNAGLFCWVD 363
Query: 370 LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKR 429
+ LL+ T E E+ LW +++EVKLNISPGSSCHC+EPGWFRVCFAN+SE+TL+VAL R
Sbjct: 364 MRHLLKSNTFEAEIELWKKIVYEVKLNISPGSSCHCNEPGWFRVCFANLSEETLKVALDR 423
Query: 430 IHNFM 434
+ F+
Sbjct: 424 LKRFV 428
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|P37821|1A1C_MALDO 1-aminocyclopropane-1-carboxylate synthase OS=Malus domestica GN=ACS-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 556 bits (1434), Expect = e-158, Method: Compositional matrix adjust.
Identities = 255/426 (59%), Positives = 332/426 (77%), Gaps = 5/426 (1%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LS+ A +HG+DS YF GW+ Y++NPY E N +G+IQMGLAENQ+ FDLLE +L + P
Sbjct: 4 LSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKNP 63
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
EA+ + K G F E ALFQDYHGL +F++AM FM +IRG + FD N +V+TAGAT+A
Sbjct: 64 EAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSA 123
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE F LADPG+A+L+PTPYYPGFDRDL+WRTG++IVPIHC SSN FQIT ALE AY+
Sbjct: 124 NETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQ 183
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252
EAE +++RV+GVL+TNPSNPLG T+ R+ L LL F K IHL+SDEIYSG+AFSS F
Sbjct: 184 EAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSF 243
Query: 253 VSIAEILEARQYKDS----ERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT 308
+S+ E+L+ R ++ +RVH+VYSLSKDLGLPGFRVG IYS +D VV A +MSSF
Sbjct: 244 ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG 303
Query: 309 LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWM 368
L+SSQTQ+LL++MLS+KK T+NYI N +RL++R + ++ GL+ +GI CL GNAGLFCW+
Sbjct: 304 LVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWV 363
Query: 369 NLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALK 428
++ LL T E E+ LW +++EV LNISPGSSCHC+EPGWFRVCFAN+ E+TL++A++
Sbjct: 364 DMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQ 423
Query: 429 RIHNFM 434
R+ F+
Sbjct: 424 RLKAFV 429
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Malus domestica (taxid: 3750) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q42881|1A13_SOLLC 1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 553 bits (1425), Expect = e-157, Method: Compositional matrix adjust.
Identities = 258/426 (60%), Positives = 335/426 (78%), Gaps = 4/426 (0%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LS+ A +HG+DS YF GW+ Y++NPY+E NP G+IQMGLAENQ+SFDLLE +L Q P
Sbjct: 4 LSEKATCNSHGQDSSYFLGWQEYEKNPYDEIQNPKGIIQMGLAENQLSFDLLESWLAQNP 63
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
+A+ + + G FRE ALFQDYHGL +F+ AM FM +IRG R FD N +V+TAGAT+A
Sbjct: 64 DAAGFKRNGESIFRELALFQDYHGLPAFKNAMTKFMSEIRGNRVSFDSNNLVLTAGATSA 123
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE L F LA+ GDA L+PTPYYPGFDRDL+WRTG +IVPIHC SSN F+IT ALE AY
Sbjct: 124 NETLMFCLANQGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFRITESALEEAYL 183
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252
+A+ ++++V+GVL+TNPSNPLG T+ R+ LE LL F K IHL+SDEIYSG+ F+S F
Sbjct: 184 DAKKRNLKVKGVLVTNPSNPLGTTLNRNELELLLTFIDEKGIHLISDEIYSGTVFNSPGF 243
Query: 253 VSIAEILEARQYKDS---ERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL 309
VS+ E+L + Y + ERVHIVYSLSKDLGLPGFR+G IYS ++ VV+ A +MSSF L
Sbjct: 244 VSVMEVLIEKNYMKTRVWERVHIVYSLSKDLGLPGFRIGAIYSNDEMVVSAATKMSSFGL 303
Query: 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMN 369
+SSQTQYLL+ MLS+KKFT+ YI N++RL+KR+ M+++GL+SAGI CL+ NAGLFCW++
Sbjct: 304 VSSQTQYLLSCMLSDKKFTKKYISENQKRLKKRHAMLVKGLKSAGINCLESNAGLFCWVD 363
Query: 370 LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKR 429
+ LL + E+ LW ++++V LNISPGSSCHC+EPGWFRVCFANMSE TL++A++R
Sbjct: 364 MRHLLSSNNFDAEMDLWKKIVYDVGLNISPGSSCHCTEPGWFRVCFANMSEDTLDLAMRR 423
Query: 430 IHNFMQ 435
I +F++
Sbjct: 424 IKDFVE 429
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Solanum lycopersicum (taxid: 4081) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q43309|1A14_ARATH 1-aminocyclopropane-1-carboxylate synthase 4 OS=Arabidopsis thaliana GN=ACS4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 553 bits (1424), Expect = e-156, Method: Compositional matrix adjust.
Identities = 256/424 (60%), Positives = 332/424 (78%), Gaps = 5/424 (1%)
Query: 12 VGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQ 71
V LS+ A +HG+ S YF GW+ Y++NPY+ + NP G+IQMGLAENQ+ FDLLE +L Q
Sbjct: 2 VQLSRKATCNSHGQVSSYFLGWEEYEKNPYDVTKNPQGIIQMGLAENQLCFDLLESWLAQ 61
Query: 72 QPEASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGAT 130
+A+ + + G FRE ALFQDYHGL SF+ A A FM + RG R FD N +V+TAGAT
Sbjct: 62 NTDAACFKRDGQSVFRELALFQDYHGLSSFKNAFADFMSENRGNRVSFDSNNLVLTAGAT 121
Query: 131 AANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAA 190
+ANE L F LADPGDA L+PTPYYPGFDRDL+WRTG++IVPI S+N F+IT ALE A
Sbjct: 122 SANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIQSSSTNGFRITKLALEEA 181
Query: 191 YKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATR-KNIHLVSDEIYSGSAFSS 249
Y++A+ D+ V+G+LITNPSNPLG T ++ L L DF T+ KNIHLVSDEIYSG+ F+S
Sbjct: 182 YEQAKKLDLNVKGILITNPSNPLGTTTTQTELNILFDFITKNKNIHLVSDEIYSGTVFNS 241
Query: 250 SEFVSIAEILEARQYKDSE---RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS 306
SEF+S+ EIL+ Q ++++ RVHIV SLSKDLGLPGFRVG IYS + V++ A +MSS
Sbjct: 242 SEFISVMEILKNNQLENTDVLNRVHIVCSLSKDLGLPGFRVGAIYSNDKDVISAATKMSS 301
Query: 307 FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFC 366
F L+SSQTQYLL+S+LS+KKFT+NY++ N++RL+ R + ++ GL + GI+CLK NAGLFC
Sbjct: 302 FGLVSSQTQYLLSSLLSDKKFTKNYLRENQKRLKNRQRKLVLGLEAIGIKCLKSNAGLFC 361
Query: 367 WMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVA 426
W+++ PLL +T E E+ LW +++EVKLNISPGSSCHC EPGWFRVCFANM ++TL++A
Sbjct: 362 WVDMRPLLRSKTFEAEMDLWKKIVYEVKLNISPGSSCHCEEPGWFRVCFANMIDETLKLA 421
Query: 427 LKRI 430
LKR+
Sbjct: 422 LKRL 425
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q9M2Y8|1A19_ARATH 1-aminocyclopropane-1-carboxylate synthase 9 OS=Arabidopsis thaliana GN=ACS9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 550 bits (1418), Expect = e-156, Method: Compositional matrix adjust.
Identities = 256/432 (59%), Positives = 338/432 (78%), Gaps = 4/432 (0%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LS+ S HG+DS YF GW+ Y++NPY+E NP+G+IQMGLAENQ+ FDL+E +L + P
Sbjct: 4 LSRKVTSNAHGQDSSYFLGWEEYEKNPYDEIKNPNGIIQMGLAENQLCFDLIETWLAKNP 63
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
+A+ K G F+E ALFQDYHGL F++A+A FME+IRG R FD ++IV+ AG+T+A
Sbjct: 64 DAAGLKKDGQSIFKELALFQDYHGLPEFKKALAEFMEEIRGNRVTFDPSKIVLAAGSTSA 123
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE L F LA+PGDA L+PTPYYPGFDRDL+WRTG +IVPIHC SSN FQIT AL+ AY+
Sbjct: 124 NETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFQITESALQQAYQ 183
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252
+A+ D++V+GVL+TNPSNPLG + R L L+DF T KNIHL+SDEIYSG+ F +F
Sbjct: 184 QAQKLDLKVKGVLVTNPSNPLGTMLTRRELNLLVDFITSKNIHLISDEIYSGTVFGFEQF 243
Query: 253 VSIAEILEARQYKDSE---RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL 309
VS+ ++L+ + ++SE RVHIVYSLSKDLGLPGFRVG IYS ++ VV+ A +MSSF L
Sbjct: 244 VSVMDVLKDKNLENSEVSKRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFGL 303
Query: 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMN 369
+SSQTQYLL+++LS+KKFT Y+ N++RL+ R + ++ GL +AGI CLK NAGLFCW++
Sbjct: 304 VSSQTQYLLSALLSDKKFTSTYLDENQKRLKIRQKKLVSGLEAAGITCLKSNAGLFCWVD 363
Query: 370 LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKR 429
+ LL+ T E EL LW ++++VKLNISPGSSCHC+EPGWFRVCFANMSE TL++A+KR
Sbjct: 364 MRHLLDTNTFEAELELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLDLAMKR 423
Query: 430 IHNFMQKRERRR 441
+ +++ + RR
Sbjct: 424 LKEYVESTDSRR 435
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|P18485|1A12_SOLLC 1-aminocyclopropane-1-carboxylate synthase 2 OS=Solanum lycopersicum GN=ACS2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 550 bits (1416), Expect = e-155, Method: Compositional matrix adjust.
Identities = 241/423 (56%), Positives = 328/423 (77%), Gaps = 2/423 (0%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LSK+A +E HGE+SPYF GWKAYD +P+ NP+GVIQMGLAENQ+ DL+E+++++ P
Sbjct: 12 LSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRNP 71
Query: 74 EASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAAN 133
+ S +G F+ A FQDYHGL FR+A+A FME+ RGGR +FD R+V+ GAT AN
Sbjct: 72 KGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGAN 131
Query: 134 ELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKE 193
E + F LADPGDA LVP+PYYP F+RDLRWRTG++++PIHC+SSNNF+IT +A++ AY+
Sbjct: 132 ETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYEN 191
Query: 194 AESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253
A+ +++V+G+++TNPSNPLG T+ + L+ +L F + NIHLV DEIY+ + F + +FV
Sbjct: 192 AQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFV 251
Query: 254 SIAEILEARQ--YKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLIS 311
SIAEIL+ ++ Y + + VHIVYSLSKD+GLPGFRVG IYS+ND VV AR+MSSF L+S
Sbjct: 252 SIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVS 311
Query: 312 SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLS 371
+QTQY LA+MLS++KF +N+++ + RL KR++ GL GI+CLK NAGLFCWM+L
Sbjct: 312 TQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLR 371
Query: 372 PLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIH 431
PLL E T + E++LW ++++VKLN+SPGSS C EPGWFRVCFANM + T+++AL RI
Sbjct: 372 PLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIR 431
Query: 432 NFM 434
F+
Sbjct: 432 RFV 434
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Solanum lycopersicum (taxid: 4081) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q37001|1A15_ARATH 1-aminocyclopropane-1-carboxylate synthase 5 OS=Arabidopsis thaliana GN=ACS5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 547 bits (1410), Expect = e-155, Method: Compositional matrix adjust.
Identities = 254/432 (58%), Positives = 337/432 (78%), Gaps = 4/432 (0%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LS S HG+DS YF GW+ Y++NPY+E NP+G+IQMGLAENQ+ FDL+E +L + P
Sbjct: 4 LSTKVTSNGHGQDSSYFLGWEEYEKNPYDEIKNPNGMIQMGLAENQLCFDLIESWLTKNP 63
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
+A++ + G FRE ALFQDYHG+ F++AMA FME+IRG R FD +IV+ AG+T+A
Sbjct: 64 DAASLKRNGQSIFRELALFQDYHGMPEFKKAMAEFMEEIRGNRVTFDPKKIVLAAGSTSA 123
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE L F LA+PGDA L+PTPYYPGFDRDL+WRTG +IVPIHC SSN FQIT AL+ AY+
Sbjct: 124 NETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFQITESALQQAYQ 183
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252
+A+ D++V+GVL+TNPSNPLG + R L L+DF T KNIHL+SDEIYSG+ F +F
Sbjct: 184 QAQKLDLKVKGVLVTNPSNPLGTALTRRELNLLVDFITSKNIHLISDEIYSGTMFGFEQF 243
Query: 253 VSIAEILEARQYKDSE---RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL 309
+S+ ++L+ ++ +D+E RVH+VYSLSKDLGLPGFRVG IYS ++ +V+ A +MSSF L
Sbjct: 244 ISVMDVLKDKKLEDTEVSKRVHVVYSLSKDLGLPGFRVGAIYSNDEMIVSAATKMSSFGL 303
Query: 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMN 369
+SSQTQYLL+++LS+KKFT Y++ N++RL+ R + ++ GL SAGI CL+ NAGLFCW++
Sbjct: 304 VSSQTQYLLSALLSDKKFTSQYLEENQKRLKSRQRRLVSGLESAGITCLRSNAGLFCWVD 363
Query: 370 LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKR 429
+ LL+ T E EL LW +++ VKLNISPGSSCHC+EPGWFRVCFANMSE TL++ALKR
Sbjct: 364 MRHLLDTNTFEAELDLWKKIVYNVKLNISPGSSCHCTEPGWFRVCFANMSEDTLDLALKR 423
Query: 430 IHNFMQKRERRR 441
+ F++ + R
Sbjct: 424 LKTFVESTDCGR 435
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q9S9U6|1A111_ARATH 1-aminocyclopropane-1-carboxylate synthase 11 OS=Arabidopsis thaliana GN=ACS11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 546 bits (1406), Expect = e-154, Method: Compositional matrix adjust.
Identities = 249/423 (58%), Positives = 325/423 (76%), Gaps = 1/423 (0%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LS V ++HG+DS YF GW+ Y++NP+ ES N SG++QMGLAENQ+SFDL+E++LE+ P
Sbjct: 2 LSSKVVGDSHGQDSSYFLGWQEYEKNPFHESFNTSGIVQMGLAENQLSFDLIEKWLEEHP 61
Query: 74 EASTWGKGAPG-FRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
E K FR+ ALFQDYHGL +F+ AMA FM +IR + KFD N++V+TAG+T+A
Sbjct: 62 EVLGLKKNDESVFRQLALFQDYHGLPAFKDAMAKFMGKIRENKVKFDTNKMVLTAGSTSA 121
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE L F LA+PGDA L+P PYYPGFDRDL+WRTG++IVPIHC SSN ++IT ALE AY+
Sbjct: 122 NETLMFCLANPGDAFLIPAPYYPGFDRDLKWRTGVEIVPIHCVSSNGYKITEDALEDAYE 181
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252
A ++ V+GVLITNPSNPLG + R L+ LL F + K IH+VSDEIYSG+ F S EF
Sbjct: 182 RALKHNLNVKGVLITNPSNPLGTSTTREELDLLLTFTSTKKIHMVSDEIYSGTVFDSPEF 241
Query: 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISS 312
S+ E+ + + ++H+VYSLSKDLGLPGFRVG IYS N+KVV+ A +MSSF LISS
Sbjct: 242 TSVLEVAKDKNMGLDGKIHVVYSLSKDLGLPGFRVGLIYSNNEKVVSAATKMSSFGLISS 301
Query: 313 QTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSP 372
QTQ+LLA++LS+++FT NY++ N++RL++R ++ GL+ AGI CLK NAGLFCW++L
Sbjct: 302 QTQHLLANLLSDERFTTNYLEENKKRLRERKDRLVSGLKEAGISCLKSNAGLFCWVDLRH 361
Query: 373 LLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHN 432
LL+ T E E +LW ++ EV LNISPGSSCHC EPGWFRVCFANMS+QT+EVA+ R+
Sbjct: 362 LLKSNTFEAEHSLWTKIVCEVGLNISPGSSCHCDEPGWFRVCFANMSDQTMEVAMDRVKG 421
Query: 433 FMQ 435
F+
Sbjct: 422 FVD 424
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 442 | ||||||
| 255546203 | 440 | acc synthase, putative [Ricinus communis | 0.995 | 1.0 | 0.882 | 0.0 | |
| 224088009 | 440 | 1-aminocyclopropane-1-carboxylate [Popul | 0.986 | 0.990 | 0.888 | 0.0 | |
| 100811854 | 445 | 1-aminocyclopropane-1-carboxylic acid sy | 0.993 | 0.986 | 0.853 | 0.0 | |
| 224122578 | 446 | 1-aminocyclopropane-1-carboxylate [Popul | 0.986 | 0.977 | 0.869 | 0.0 | |
| 348652793 | 446 | 1-aminocyclopropane-1-carboxylic acid sy | 0.993 | 0.984 | 0.858 | 0.0 | |
| 100811861 | 446 | 1-aminocyclopropane-1-carboxylic acid sy | 0.993 | 0.984 | 0.855 | 0.0 | |
| 4586411 | 446 | 1-aminocyclopropane -1-carboxylate synth | 0.993 | 0.984 | 0.853 | 0.0 | |
| 1658062 | 446 | ACC synthase [Malus x domestica] gi|1008 | 0.993 | 0.984 | 0.855 | 0.0 | |
| 348652791 | 446 | 1-aminocyclopropane-1-carboxylic acid sy | 0.993 | 0.984 | 0.853 | 0.0 | |
| 374862413 | 446 | ACC synthase [Pyrus pyrifolia] gi|448871 | 0.993 | 0.984 | 0.853 | 0.0 |
| >gi|255546203|ref|XP_002514161.1| acc synthase, putative [Ricinus communis] gi|223546617|gb|EEF48115.1| acc synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/442 (88%), Positives = 417/442 (94%), Gaps = 2/442 (0%)
Query: 1 MAIEIEQPSVSVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQV 60
MAIEIEQP+V GLSK+AVSETHGEDSPYFAGWKAYDE+PY E NPSGVIQMGLAENQV
Sbjct: 1 MAIEIEQPAV--GLSKIAVSETHGEDSPYFAGWKAYDEDPYHEYENPSGVIQMGLAENQV 58
Query: 61 SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120
SFDLLEEYL + EAS+WGKGA FRENALFQDYHGL SFRQAMASFMEQIRGGRAKFD
Sbjct: 59 SFDLLEEYLAKHSEASSWGKGALSFRENALFQDYHGLSSFRQAMASFMEQIRGGRAKFDS 118
Query: 121 NRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNF 180
+RIV+TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTG+KIVPIHCDSSNNF
Sbjct: 119 DRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNF 178
Query: 181 QITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDE 240
QITPQALEAAYKEAE+K+++VRGVLITNPSNPLGATIQRSVLEE+LDFATRKNIHLVSDE
Sbjct: 179 QITPQALEAAYKEAEAKNIKVRGVLITNPSNPLGATIQRSVLEEILDFATRKNIHLVSDE 238
Query: 241 IYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT 300
IYSGS FSSSEF+SIAE+LEAR YKD+ERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT
Sbjct: 239 IYSGSVFSSSEFISIAEVLEARGYKDAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT 298
Query: 301 ARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKG 360
ARRMSSFTLISSQTQ+LLASMLSNK+FT+NYIK NRERL KRY+MII+GLR AGIECLKG
Sbjct: 299 ARRMSSFTLISSQTQHLLASMLSNKEFTKNYIKINRERLNKRYEMIIQGLRDAGIECLKG 358
Query: 361 NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSE 420
NAGLFCWMNLSPLLE QTREGELALW S+L +VKLNISPGSSC CSEPGWFRVCFANMSE
Sbjct: 359 NAGLFCWMNLSPLLETQTREGELALWKSILRDVKLNISPGSSCRCSEPGWFRVCFANMSE 418
Query: 421 QTLEVALKRIHNFMQKRERRRN 442
QTLEVALKRIH+FM +++ N
Sbjct: 419 QTLEVALKRIHDFMDQKKTGSN 440
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224088009|ref|XP_002308289.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] gi|222854265|gb|EEE91812.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/438 (88%), Positives = 418/438 (95%), Gaps = 2/438 (0%)
Query: 1 MAIEIEQPSVSVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQV 60
MAIEIEQPSV GLSKVAVSETHGEDSPYFAGWKAY+E+PY+ES+NPSGVIQMGLAENQV
Sbjct: 1 MAIEIEQPSV--GLSKVAVSETHGEDSPYFAGWKAYNEDPYDESSNPSGVIQMGLAENQV 58
Query: 61 SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120
SFDLLEEYLEQ EAS+WGKG+PGFRENALFQDYHGL+SFRQAMA FMEQIRGGRAKFD
Sbjct: 59 SFDLLEEYLEQHSEASSWGKGSPGFRENALFQDYHGLESFRQAMAGFMEQIRGGRAKFDP 118
Query: 121 NRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNF 180
+R+V+TAGATAANELLTFILA+PGDALLVPTPYYPGFDRDLRWRTG KIVPIHCD SNNF
Sbjct: 119 DRVVLTAGATAANELLTFILANPGDALLVPTPYYPGFDRDLRWRTGAKIVPIHCDISNNF 178
Query: 181 QITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDE 240
Q+T QALEAAY+ A + ++ VRGVLITNPSNPLG TIQRSVLEE+LDF+TRKNIHLVSDE
Sbjct: 179 QVTTQALEAAYEGAVAMNINVRGVLITNPSNPLGVTIQRSVLEEILDFSTRKNIHLVSDE 238
Query: 241 IYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT 300
IYSGS FSSSEF+SIAEILEAR YKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT
Sbjct: 239 IYSGSTFSSSEFISIAEILEARGYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT 298
Query: 301 ARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKG 360
ARRMSSFTLISSQTQ+LLASMLSNKKFTENYIK NRERL+KRY+MII+GLRSAGIECLKG
Sbjct: 299 ARRMSSFTLISSQTQHLLASMLSNKKFTENYIKENRERLRKRYEMIIQGLRSAGIECLKG 358
Query: 361 NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSE 420
NAGLFCWMNLSPLLE TREGE+ALW S+LHEVKLNISPGSSCHCSEPGWFRVCFANMSE
Sbjct: 359 NAGLFCWMNLSPLLETPTREGEVALWKSILHEVKLNISPGSSCHCSEPGWFRVCFANMSE 418
Query: 421 QTLEVALKRIHNFMQKRE 438
+TLEVALKRIHNFM++R+
Sbjct: 419 ETLEVALKRIHNFMEQRK 436
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|100811854|dbj|BAE94691.1| 1-aminocyclopropane-1-carboxylic acid synthase 3b [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/443 (85%), Positives = 413/443 (93%), Gaps = 4/443 (0%)
Query: 1 MAIEIEQPSVSVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQV 60
MAIEI+Q SVGLSK+AVS+THGEDSPYFAGWKAYD+NPY ES+NPSGVIQMGLAENQV
Sbjct: 1 MAIEIKQQQPSVGLSKIAVSDTHGEDSPYFAGWKAYDQNPYHESSNPSGVIQMGLAENQV 60
Query: 61 SFDLLEEYLEQQPEASTWG----KGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRA 116
SFDLLE+YLE+ EAS WG KG GFRENALFQDYHGL SFR+AMASFMEQIRGGRA
Sbjct: 61 SFDLLEKYLEENSEASNWGSKGSKGVSGFRENALFQDYHGLLSFRKAMASFMEQIRGGRA 120
Query: 117 KFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS 176
K D R+V+TAGATAANELLTFI+ADPGDALLVPTPYYPGFDRDLRWRTG+ IVPIHC+S
Sbjct: 121 KIDPARVVLTAGATAANELLTFIIADPGDALLVPTPYYPGFDRDLRWRTGVNIVPIHCES 180
Query: 177 SNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHL 236
SN FQITP+ALEAA+KEAE K+MRVRGVLITNPSNPLGATIQR+VLE++LDF T+KNIHL
Sbjct: 181 SNKFQITPEALEAAHKEAEDKNMRVRGVLITNPSNPLGATIQRAVLEQILDFVTKKNIHL 240
Query: 237 VSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDK 296
VSDEIYSGSAFSSSEF+S+AEILE RQYKD+ERVHIVYSLSKDLGLPGFRVGT+YSYNDK
Sbjct: 241 VSDEIYSGSAFSSSEFISVAEILEDRQYKDAERVHIVYSLSKDLGLPGFRVGTVYSYNDK 300
Query: 297 VVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIE 356
VVTTARRMSSFTLISSQTQ+LLASMLS+K+FTENYI TNRERL+KRY MI+EGL+ +GIE
Sbjct: 301 VVTTARRMSSFTLISSQTQHLLASMLSDKEFTENYINTNRERLRKRYDMIVEGLKKSGIE 360
Query: 357 CLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA 416
CLKGNAGLFCWMNLSP L+E TREGEL LWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA
Sbjct: 361 CLKGNAGLFCWMNLSPFLDEPTREGELTLWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA 420
Query: 417 NMSEQTLEVALKRIHNFMQKRER 439
NMSEQTL +AL RIHNFM+K+ER
Sbjct: 421 NMSEQTLGIALTRIHNFMEKKER 443
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122578|ref|XP_002330516.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] gi|222872450|gb|EEF09581.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/438 (86%), Positives = 415/438 (94%), Gaps = 2/438 (0%)
Query: 1 MAIEIEQPSVSVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQV 60
MAIEI QP+V GLSKVAVSETHGEDSPYFAGWKA+DE+PY+ES+N SGVIQMGLAENQV
Sbjct: 1 MAIEIGQPAV--GLSKVAVSETHGEDSPYFAGWKAHDEDPYDESSNSSGVIQMGLAENQV 58
Query: 61 SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120
SFDLLEEYLEQ EAS+WG+GA GFRENALFQDYHGLKSFRQAMASFME+IRGGRAKFD
Sbjct: 59 SFDLLEEYLEQNSEASSWGEGARGFRENALFQDYHGLKSFRQAMASFMEKIRGGRAKFDP 118
Query: 121 NRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNF 180
+R+V+TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTG+KIVPIHCDSSNNF
Sbjct: 119 DRVVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNF 178
Query: 181 QITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDE 240
Q+T +A+EAAY+ A + +++VRGVLITNPSNPLGATIQRSVLEE+LDFA RKNIH+VSDE
Sbjct: 179 QVTLEAMEAAYQHAVAMNIKVRGVLITNPSNPLGATIQRSVLEEILDFAKRKNIHVVSDE 238
Query: 241 IYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT 300
IYSGS FSSSEFVSIAEILEAR YKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT
Sbjct: 239 IYSGSTFSSSEFVSIAEILEARGYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT 298
Query: 301 ARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKG 360
ARRMSSFTLISSQTQ++LA MLSN+KFTENYIKTNRERL+KRY+MII+GL+ AGIECLKG
Sbjct: 299 ARRMSSFTLISSQTQHMLALMLSNEKFTENYIKTNRERLRKRYEMIIQGLKDAGIECLKG 358
Query: 361 NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSE 420
NAGLFCWMNLSPLLE TREGELALW S+LHEVK+NISPGSSCHCSEPGWFRVCFANMSE
Sbjct: 359 NAGLFCWMNLSPLLEAPTREGELALWKSILHEVKINISPGSSCHCSEPGWFRVCFANMSE 418
Query: 421 QTLEVALKRIHNFMQKRE 438
TL VALKRIH+FM +R+
Sbjct: 419 PTLAVALKRIHDFMDQRK 436
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|348652793|gb|AEP82201.1| 1-aminocyclopropane-1-carboxylic acid synthase 3a-2 [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/444 (85%), Positives = 413/444 (93%), Gaps = 5/444 (1%)
Query: 1 MAIEIEQ-PSVSVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQ 59
MAI+IEQ S GLSK+AVS+THGEDSPYFAGWKAYDENPY ES+NPSGVIQMGLAENQ
Sbjct: 1 MAIDIEQRQQPSPGLSKIAVSDTHGEDSPYFAGWKAYDENPYHESSNPSGVIQMGLAENQ 60
Query: 60 VSFDLLEEYLEQQPEASTWG----KGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115
VSFDLLE++LE+ EAS WG KG GFRENALFQDYHGL SFR+AMA+FMEQIRGGR
Sbjct: 61 VSFDLLEKHLEENSEASNWGSKGSKGVSGFRENALFQDYHGLLSFRKAMANFMEQIRGGR 120
Query: 116 AKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD 175
AKFD R+V+TAGATAANELLTFI+ADPGDALLVPTPYYPGFDRDLRWRTG+ IVPIHC+
Sbjct: 121 AKFDPVRVVLTAGATAANELLTFIIADPGDALLVPTPYYPGFDRDLRWRTGVNIVPIHCE 180
Query: 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIH 235
SSNNFQITPQALEAAYKEAE+K+MRVRGVLITNPSNPLGATIQR+VLEE+LDF T+KNIH
Sbjct: 181 SSNNFQITPQALEAAYKEAEAKNMRVRGVLITNPSNPLGATIQRAVLEEILDFVTQKNIH 240
Query: 236 LVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYND 295
LVSDEIYSGSAFSSSEF+S+AEILE RQYKD+ERVHIVYSLSKDLGLPGFRVGT+YSYND
Sbjct: 241 LVSDEIYSGSAFSSSEFISVAEILEDRQYKDAERVHIVYSLSKDLGLPGFRVGTVYSYND 300
Query: 296 KVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGI 355
KVVTTARRMSSFTLISSQTQ+LLASMLS+K+FT NYIKTNRERL+ RY MIIEGL+ +GI
Sbjct: 301 KVVTTARRMSSFTLISSQTQHLLASMLSDKEFTGNYIKTNRERLRTRYDMIIEGLKKSGI 360
Query: 356 ECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCF 415
ECLKGNAGLFCWMNLSP L+E TRE EL LWDSMLHEVKLNISPGSSCHCSEPGWFRVCF
Sbjct: 361 ECLKGNAGLFCWMNLSPFLDEPTRECELTLWDSMLHEVKLNISPGSSCHCSEPGWFRVCF 420
Query: 416 ANMSEQTLEVALKRIHNFMQKRER 439
ANMSEQTL +AL RIHNFM+KRER
Sbjct: 421 ANMSEQTLGIALTRIHNFMEKRER 444
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|100811861|dbj|BAE94692.1| 1-aminocyclopropane-1-carboxylic acid synthase 3c [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/444 (85%), Positives = 413/444 (93%), Gaps = 5/444 (1%)
Query: 1 MAIEIEQPS-VSVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQ 59
M IEIEQ SVGLSK+AVS THGEDSPYFAGWKAYDENPY+ES+NPSGVIQMGLAENQ
Sbjct: 1 MGIEIEQQQQPSVGLSKIAVSNTHGEDSPYFAGWKAYDENPYDESSNPSGVIQMGLAENQ 60
Query: 60 VSFDLLEEYLEQQPEASTWG----KGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115
VSFD+LE+YLE+ EAS WG KG GFRENALFQDYHGL SFR+AMASFMEQIRGGR
Sbjct: 61 VSFDVLEKYLEEHSEASNWGAKASKGVSGFRENALFQDYHGLLSFRKAMASFMEQIRGGR 120
Query: 116 AKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD 175
AKFD +RIV+TAGATAANELLTFI+A PGDALLVP+PYYPGFDRDLRWRTG+ IVPIHC
Sbjct: 121 AKFDPDRIVLTAGATAANELLTFIIAGPGDALLVPSPYYPGFDRDLRWRTGVNIVPIHCA 180
Query: 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIH 235
SSNNFQITPQAL+AAYKEAE+K+MRVRGVLITNPSNPLGAT+QR+VLEE+LDF TRKNIH
Sbjct: 181 SSNNFQITPQALDAAYKEAEAKNMRVRGVLITNPSNPLGATVQRAVLEEILDFVTRKNIH 240
Query: 236 LVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYND 295
LVSDEIYSGSAFSS+EF+SIAEILE RQYKD+ERVHIVYSLSKDLGLPGFR+GT+YSYND
Sbjct: 241 LVSDEIYSGSAFSSTEFISIAEILEDRQYKDAERVHIVYSLSKDLGLPGFRIGTVYSYND 300
Query: 296 KVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGI 355
KVVTTARRMSSFTLISSQTQ+LLASMLS K+FTENYIKTNRERL+KRY MIIEGL+ +GI
Sbjct: 301 KVVTTARRMSSFTLISSQTQHLLASMLSEKEFTENYIKTNRERLRKRYDMIIEGLKKSGI 360
Query: 356 ECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCF 415
ECL GNAGLFCWMNLSPLLE+ TREGELALWDSML+EVKLNISPGSSCHCSEPGWFRVC
Sbjct: 361 ECLTGNAGLFCWMNLSPLLEKPTREGELALWDSMLYEVKLNISPGSSCHCSEPGWFRVCS 420
Query: 416 ANMSEQTLEVALKRIHNFMQKRER 439
NMSEQTL +AL RIHNFM+K+ER
Sbjct: 421 NNMSEQTLGIALTRIHNFMEKKER 444
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4586411|dbj|BAA76388.1| 1-aminocyclopropane -1-carboxylate synthase [Pyrus pyrifolia] | Back alignment and taxonomy information |
|---|
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/444 (85%), Positives = 414/444 (93%), Gaps = 5/444 (1%)
Query: 1 MAIEIEQPS-VSVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQ 59
MAI+IEQ S GLSK+AVS+THGEDSPYFAGWKAYDENPY ES+NPSGVIQMGLAENQ
Sbjct: 1 MAIDIEQQQQPSPGLSKIAVSDTHGEDSPYFAGWKAYDENPYHESSNPSGVIQMGLAENQ 60
Query: 60 VSFDLLEEYLEQQPEASTWG----KGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115
VSFDLLE++LE+ EAS WG KG GFRENALFQDYHGL SFR+AMASFMEQIRGGR
Sbjct: 61 VSFDLLEKHLEENSEASNWGSKGSKGVSGFRENALFQDYHGLLSFRKAMASFMEQIRGGR 120
Query: 116 AKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD 175
AKFD R+V+TAGATAANELLTFI+ADPGDALLVPTPYYPGFDRDLRWRTG+ IVPIHC+
Sbjct: 121 AKFDPARVVLTAGATAANELLTFIIADPGDALLVPTPYYPGFDRDLRWRTGVNIVPIHCE 180
Query: 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIH 235
SSNNFQITPQALEAAYKEAE+K+MRVRGVLITNPSNPLGATIQR+VLEE+LDF T+KNIH
Sbjct: 181 SSNNFQITPQALEAAYKEAEAKNMRVRGVLITNPSNPLGATIQRAVLEEILDFVTQKNIH 240
Query: 236 LVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYND 295
LVSDEIYSGSAFSSSEF+S+AEILE RQYKD+ERVHIVYSLSKDLGLPGFRVGT+YS+ND
Sbjct: 241 LVSDEIYSGSAFSSSEFISVAEILEDRQYKDAERVHIVYSLSKDLGLPGFRVGTVYSFND 300
Query: 296 KVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGI 355
KVVTTARRMSSFTLISS+TQ+LLASMLS+K+FT NYIKTNRERL++RY MI+EGL+ +GI
Sbjct: 301 KVVTTARRMSSFTLISSETQHLLASMLSDKEFTGNYIKTNRERLRRRYDMIVEGLKKSGI 360
Query: 356 ECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCF 415
ECLKGNAGLFCWMNLSP L+E TRE EL LWDSMLHEVKLNISPGSSCHCSEPGWFRVCF
Sbjct: 361 ECLKGNAGLFCWMNLSPFLDEPTRECELTLWDSMLHEVKLNISPGSSCHCSEPGWFRVCF 420
Query: 416 ANMSEQTLEVALKRIHNFMQKRER 439
ANMSEQTL +AL RIHNFM+KRER
Sbjct: 421 ANMSEQTLGIALTRIHNFMEKRER 444
|
Source: Pyrus pyrifolia Species: Pyrus pyrifolia Genus: Pyrus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1658062|gb|AAB67989.1| ACC synthase [Malus x domestica] gi|100811847|dbj|BAE94690.1| 1-aminocyclopropane-1-carboxylic acid synthase 3a [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/444 (85%), Positives = 414/444 (93%), Gaps = 5/444 (1%)
Query: 1 MAIEIEQ-PSVSVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQ 59
MAI+IEQ S GLSK+AVS+THGEDSPYFAGWKAYDENPY ES+NPSGVIQMGLAENQ
Sbjct: 1 MAIDIEQRQQPSPGLSKIAVSDTHGEDSPYFAGWKAYDENPYHESSNPSGVIQMGLAENQ 60
Query: 60 VSFDLLEEYLEQQPEASTWG----KGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115
VSFDLLE++LE+ EAS WG KGA GFRENALFQDYHGL SFR+AMA+FMEQIRGGR
Sbjct: 61 VSFDLLEKHLEENSEASNWGSKGSKGASGFRENALFQDYHGLLSFRKAMANFMEQIRGGR 120
Query: 116 AKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD 175
AKFD R+V+TAGATAANELLTFI+ADPGDALLVPTPYYPGFDRDLRWRTG+ IVPIHC+
Sbjct: 121 AKFDPVRVVLTAGATAANELLTFIIADPGDALLVPTPYYPGFDRDLRWRTGVNIVPIHCE 180
Query: 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIH 235
SSNNFQITPQALEAAYKEAE+K+MRVRGVLITNPSNPLGATIQR+VLEE+LDF T+KNIH
Sbjct: 181 SSNNFQITPQALEAAYKEAEAKNMRVRGVLITNPSNPLGATIQRAVLEEILDFVTQKNIH 240
Query: 236 LVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYND 295
LVSDEIYSGSAFSSSEF+S+AEI+E RQYKD+ERVHIVYSLSKDLGLPGFRVGT+YSYND
Sbjct: 241 LVSDEIYSGSAFSSSEFISVAEIIEDRQYKDAERVHIVYSLSKDLGLPGFRVGTVYSYND 300
Query: 296 KVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGI 355
KVVTTARRMSSFTLISSQTQ+LLASMLS+K+FT NYIKTNR+RL+ RY MIIEGL+ +GI
Sbjct: 301 KVVTTARRMSSFTLISSQTQHLLASMLSDKEFTGNYIKTNRKRLRTRYDMIIEGLKKSGI 360
Query: 356 ECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCF 415
ECLKGNAGLFCWMNLSP L+E TRE EL LWDSMLHEVKLNISPGSSCHCSEPGWFRVCF
Sbjct: 361 ECLKGNAGLFCWMNLSPFLDEPTRECELTLWDSMLHEVKLNISPGSSCHCSEPGWFRVCF 420
Query: 416 ANMSEQTLEVALKRIHNFMQKRER 439
ANMSEQTL +AL RIHNFM+KRER
Sbjct: 421 ANMSEQTLGIALTRIHNFMEKRER 444
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|348652791|gb|AEP82200.1| 1-aminocyclopropane-1-carboxylic acid synthase 3a-1 [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/444 (85%), Positives = 413/444 (93%), Gaps = 5/444 (1%)
Query: 1 MAIEIEQ-PSVSVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQ 59
MAI+IEQ S GLSK+AVS+THGEDSPYFAGWKAYDENPY ES+NPSGVIQMGLAENQ
Sbjct: 1 MAIDIEQRQQPSPGLSKIAVSDTHGEDSPYFAGWKAYDENPYHESSNPSGVIQMGLAENQ 60
Query: 60 VSFDLLEEYLEQQPEASTWG----KGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115
VSFDLLE++LE+ EAS WG KG GFRENALFQDYHGL SFR+AMA+FMEQIRGGR
Sbjct: 61 VSFDLLEKHLEENSEASNWGSKGTKGVSGFRENALFQDYHGLLSFRKAMANFMEQIRGGR 120
Query: 116 AKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD 175
AKFD R+V+TAGATAANELLTFI+ADPGDALLVPTPYYPGFDRDLRWRTG+ IVPIHC+
Sbjct: 121 AKFDPVRVVLTAGATAANELLTFIIADPGDALLVPTPYYPGFDRDLRWRTGVNIVPIHCE 180
Query: 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIH 235
SSNNFQITPQALEAAYKEAE+K+MRVRGVLITNPSNPLGATIQR+VLEE+LDF T+KNIH
Sbjct: 181 SSNNFQITPQALEAAYKEAEAKNMRVRGVLITNPSNPLGATIQRAVLEEILDFVTQKNIH 240
Query: 236 LVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYND 295
LVSDEIYSGSAFSSSEF+S+AEILE RQYKD+ERVHIVYSLSKDLGLPGFRVGT+YSYND
Sbjct: 241 LVSDEIYSGSAFSSSEFISVAEILEDRQYKDAERVHIVYSLSKDLGLPGFRVGTVYSYND 300
Query: 296 KVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGI 355
KVVTTARRMSSFTLISSQTQ+LLASMLS+K+FT NYIKTNRERL+ RY MI++GL+ +GI
Sbjct: 301 KVVTTARRMSSFTLISSQTQHLLASMLSDKEFTGNYIKTNRERLRTRYDMIVQGLKKSGI 360
Query: 356 ECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCF 415
ECLKGNAGLFCWMNLSP L+E TRE EL LWDSMLHEVKLNISPGSSCHCSEPGWFRVCF
Sbjct: 361 ECLKGNAGLFCWMNLSPFLDEPTRECELTLWDSMLHEVKLNISPGSSCHCSEPGWFRVCF 420
Query: 416 ANMSEQTLEVALKRIHNFMQKRER 439
ANMSEQTL +AL RIHNFM+KRER
Sbjct: 421 ANMSEQTLGIALTRIHNFMEKRER 444
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|374862413|gb|AFA25803.1| ACC synthase [Pyrus pyrifolia] gi|448871864|gb|AGE45704.1| 1-aminocyclopropane-1-carboxylic acid synthase [Pyrus pyrifolia] | Back alignment and taxonomy information |
|---|
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/444 (85%), Positives = 411/444 (92%), Gaps = 5/444 (1%)
Query: 1 MAIEIEQPS-VSVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQ 59
MAI+IEQ S GLSK+AVS+THGEDSPYFAGWK YDENPY ES+NPSGVIQMGLAENQ
Sbjct: 1 MAIDIEQQQQPSPGLSKIAVSDTHGEDSPYFAGWKTYDENPYHESSNPSGVIQMGLAENQ 60
Query: 60 VSFDLLEEYLEQQPEASTWG----KGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115
VSFDLLE +LE+ EASTWG KG GFRENALFQDYHGL SFR+AMASFMEQIRGGR
Sbjct: 61 VSFDLLENHLEENCEASTWGSKGSKGVSGFRENALFQDYHGLLSFRKAMASFMEQIRGGR 120
Query: 116 AKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD 175
AKFD R+V+TAGATAANELLTF++ADPGDALLVPTPYYPGFDRDLRWRTG+ IVPIHC+
Sbjct: 121 AKFDPARVVLTAGATAANELLTFVIADPGDALLVPTPYYPGFDRDLRWRTGVNIVPIHCE 180
Query: 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIH 235
SSNNFQITPQALEAAYKEAE+K+MRVRGVL TNPSNPLGATIQR+VLEE+LDF T+KNIH
Sbjct: 181 SSNNFQITPQALEAAYKEAEAKNMRVRGVLFTNPSNPLGATIQRTVLEEILDFVTQKNIH 240
Query: 236 LVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYND 295
LVSDEIYSGSAFSSSEF+S+AEILE RQYKD+ERVHIVYSLSKDLGLPGFRVGT+YSYND
Sbjct: 241 LVSDEIYSGSAFSSSEFISVAEILEDRQYKDAERVHIVYSLSKDLGLPGFRVGTVYSYND 300
Query: 296 KVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGI 355
KVVTTARRMSSFTLISSQTQ+LLASMLS+K+FT NYI TNRERL++RY MI+EGL+ +GI
Sbjct: 301 KVVTTARRMSSFTLISSQTQHLLASMLSDKEFTGNYINTNRERLRRRYDMIVEGLKKSGI 360
Query: 356 ECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCF 415
ECLKGNAGLFCWMNLSP L+E TRE EL LWDSMLHEVKLNISPGSSCHCSEPGWFRVCF
Sbjct: 361 ECLKGNAGLFCWMNLSPFLDEPTRECELTLWDSMLHEVKLNISPGSSCHCSEPGWFRVCF 420
Query: 416 ANMSEQTLEVALKRIHNFMQKRER 439
ANMSEQTL VAL RIHNFM+KRER
Sbjct: 421 ANMSEQTLGVALTRIHNFMEKRER 444
|
Source: Pyrus pyrifolia Species: Pyrus pyrifolia Genus: Pyrus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 442 | ||||||
| TAIR|locus:2136779 | 447 | ACS7 "1-amino-cyclopropane-1-c | 0.970 | 0.959 | 0.770 | 1.6e-180 | |
| UNIPROTKB|Q09PK3 | 481 | ACS1 "1-aminocyclopropane-1-ca | 0.957 | 0.879 | 0.590 | 3.9e-140 | |
| UNIPROTKB|Q43165 | 465 | ST ACS1A "Amino cyclopropane c | 0.966 | 0.918 | 0.582 | 1.7e-139 | |
| UNIPROTKB|A5BL65 | 469 | VITISV_037836 "Putative unchar | 0.970 | 0.914 | 0.591 | 3.5e-139 | |
| UNIPROTKB|Q00257 | 475 | ACS2 "1-aminocyclopropane-1-ca | 0.952 | 0.886 | 0.592 | 7.2e-139 | |
| TAIR|locus:2137579 | 469 | ACS8 "1-amino-cyclopropane-1-c | 0.952 | 0.897 | 0.6 | 1.5e-138 | |
| UNIPROTKB|O80334 | 467 | O80334 "1-aminocyclopropane-1- | 0.954 | 0.903 | 0.595 | 2.4e-138 | |
| TAIR|locus:2097350 | 470 | ACS9 "1-aminocyclopropane-1-ca | 0.968 | 0.910 | 0.578 | 5.1e-138 | |
| TAIR|locus:2169980 | 470 | ACS5 "ACC synthase 5" [Arabido | 0.961 | 0.904 | 0.578 | 1.1e-137 | |
| UNIPROTKB|O65028 | 470 | ACS2 "Pollen-specific 1-aminoc | 0.952 | 0.895 | 0.592 | 1.2e-136 |
| TAIR|locus:2136779 ACS7 "1-amino-cyclopropane-1-carboxylate synthase 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1752 (621.8 bits), Expect = 1.6e-180, P = 1.6e-180
Identities = 333/432 (77%), Positives = 374/432 (86%)
Query: 11 SVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLE 70
+V LS+VAVS+THGEDSPYFAGWKAYDENPY+ES NPSGVIQMGLAENQVSFDLLE YLE
Sbjct: 15 NVELSRVAVSDTHGEDSPYFAGWKAYDENPYDESHNPSGVIQMGLAENQVSFDLLETYLE 74
Query: 71 QQ-PEASTWG-KGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAG 128
++ PE S WG KGAPGFRENALFQDYHGLK+FRQAMASFMEQIRGG+A+FD +RIV+TAG
Sbjct: 75 KKNPEGSMWGSKGAPGFRENALFQDYHGLKTFRQAMASFMEQIRGGKARFDPDRIVLTAG 134
Query: 129 ATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALE 188
ATAANELLTFILADP DALLVPTPYYPGFDRDLRWRTG+KIVPIHCDSSN+FQITP+ALE
Sbjct: 135 ATAANELLTFILADPNDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNHFQITPEALE 194
Query: 189 AAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYXXXXXX 248
+AY+ A ++RVRGVLITNPSNPLGAT+Q+ VLE+LLDF RKNIHLVSDEIY
Sbjct: 195 SAYQTARDANIRVRGVLITNPSNPLGATVQKKVLEDLLDFCVRKNIHLVSDEIYSGSVFH 254
Query: 249 XXXXXXXXXXLE-ARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF 307
+E ERVHIVYSLSKDLGLPGFRVGTIYSYND VV TARRMSSF
Sbjct: 255 ASEFTSVAEIVENIDDVSVKERVHIVYSLSKDLGLPGFRVGTIYSYNDNVVRTARRMSSF 314
Query: 308 TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCW 367
TL+SSQTQ++LASMLS+++FTE YI+ NRERL++RY I+EGL+ AGIECLKGNAGLFCW
Sbjct: 315 TLVSSQTQHMLASMLSDEEFTEKYIRINRERLRRRYDTIVEGLKKAGIECLKGNAGLFCW 374
Query: 368 MNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVAL 427
MNL LLE++T++GEL LWD +L E+ LNISPGSSCHCSE GWFRVCFANMSE TLE+AL
Sbjct: 375 MNLGFLLEKKTKDGELQLWDVILKELNLNISPGSSCHCSEVGWFRVCFANMSENTLEIAL 434
Query: 428 KRIHNFMQKRER 439
KRIH FM +R R
Sbjct: 435 KRIHEFMDRRRR 446
|
|
| UNIPROTKB|Q09PK3 ACS1 "1-aminocyclopropane-1-carboxylate synthase" [Cucumis sativus (taxid:3659)] | Back alignment and assigned GO terms |
|---|
Score = 1371 (487.7 bits), Expect = 3.9e-140, P = 3.9e-140
Identities = 252/427 (59%), Positives = 333/427 (77%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LS A +HG+DS YF GW+AY++NP++E++NP+G+IQMGLAENQ+SFDLLE +L + P
Sbjct: 4 LSTKATCNSHGQDSSYFLGWEAYEKNPFDETSNPNGIIQMGLAENQLSFDLLESWLTKNP 63
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
+A+++ + G FRE ALFQDYHGL +F++A+ FM +IRG + F+ N IV+TAGAT+A
Sbjct: 64 DAASFKRDGKSIFRELALFQDYHGLPAFKKALVEFMAEIRGNKVTFEANNIVLTAGATSA 123
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE L F LA+ GDA L+PTPYYPGFDRDL+WRTG++IVPIHC SSN FQ+T ALE AY+
Sbjct: 124 NETLMFCLAEAGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQVTQPALEQAYQ 183
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYXXXXXXXXXX 252
EA+++++RV+GVL+TNPSNPLG T+ R+ L+ + DF T K IHL+SDEIY
Sbjct: 184 EAQARNLRVKGVLVTNPSNPLGTTMTRNELDLVFDFITSKGIHLISDEIYSGTVFGSPGF 243
Query: 253 XXXXXXLEARQYKDSE---RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL 309
L+ R +D E RVHIVYSLSKDLGLPGFRVG IYS ++ VV A +MSSF L
Sbjct: 244 VSAMEVLKERSNEDEEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVAAATKMSSFGL 303
Query: 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMN 369
+SSQTQYLL++MLS+KKFT YI N++RL++R +M++ GL AGI+CL+ NAGLFCW++
Sbjct: 304 VSSQTQYLLSAMLSDKKFTRTYISENQKRLKQRQKMLVSGLEKAGIKCLESNAGLFCWVD 363
Query: 370 LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKR 429
+ LLE T E EL LW +++EV LNISPGSSCHC+EPGWFRVCFANMS+ TL++A++R
Sbjct: 364 MRHLLESDTFECELKLWKKIVYEVGLNISPGSSCHCTEPGWFRVCFANMSQSTLKLAIRR 423
Query: 430 IHNFMQK 436
+ +F+Q+
Sbjct: 424 LKSFVQE 430
|
|
| UNIPROTKB|Q43165 ST ACS1A "Amino cyclopropane carboxylate acid synthase" [Solanum tuberosum (taxid:4113)] | Back alignment and assigned GO terms |
|---|
Score = 1365 (485.6 bits), Expect = 1.7e-139, P = 1.7e-139
Identities = 251/431 (58%), Positives = 327/431 (75%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LSK A+ +HG+DS YF GW+ Y++NPY+E+ NP G+IQMGLAENQ+SFDLLE +L Q P
Sbjct: 4 LSKKAMCNSHGQDSSYFLGWEEYEKNPYDETRNPKGIIQMGLAENQLSFDLLESWLTQNP 63
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
+A+ + + G FRE ALFQDYHGL +F+ A+ FM +IRG + FD N++V+TAGAT+A
Sbjct: 64 DAAAFKRNGNSIFRELALFQDYHGLPAFKDALVQFMSEIRGNKVSFDSNKLVLTAGATSA 123
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE L F LADPGDA L+PTPYYPGFDRDL+WRTG +IVPI C SSN F+IT ALE AYK
Sbjct: 124 NETLMFCLADPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIQCTSSNGFRITESALEEAYK 183
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYXXXXXXXXXX 252
EAE +++RV+GVL+TNPSNPLG+T+ + L+ LL F + K IHL+SDEIY
Sbjct: 184 EAERRNLRVKGVLVTNPSNPLGSTLTKKELQLLLTFVSTKQIHLISDEIYSGTVFNSPKF 243
Query: 253 XXXXXXLEARQYKDSE---RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL 309
L Y +E RVHIVYSLSKDLGLPGFRVG IYS +D +V+ A +MSSF L
Sbjct: 244 VSVMEVLIENNYMYTEVWDRVHIVYSLSKDLGLPGFRVGAIYSNDDMIVSAATKMSSFGL 303
Query: 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMN 369
ISSQTQYLL+++LS++KF +NY+ N++RL+KR++M++ GL+ GI CL+ NAGLFCW++
Sbjct: 304 ISSQTQYLLSALLSDQKFMKNYVSENQKRLKKRHEMLVGGLKQIGIRCLESNAGLFCWVD 363
Query: 370 LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKR 429
+ LL T +GE+ LW +++EV LNISPGSSCHC+EPGWFR CFANMSE TL +A++R
Sbjct: 364 MRHLLSSNTFDGEMELWKKIVYEVGLNISPGSSCHCTEPGWFRACFANMSEDTLNIAIQR 423
Query: 430 IHNFMQKRERR 440
+ F+ R+ +
Sbjct: 424 LKAFVDSRDNK 434
|
|
| UNIPROTKB|A5BL65 VITISV_037836 "Putative uncharacterized protein" [Vitis vinifera (taxid:29760)] | Back alignment and assigned GO terms |
|---|
Score = 1362 (484.5 bits), Expect = 3.5e-139, P = 3.5e-139
Identities = 256/433 (59%), Positives = 326/433 (75%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LS+ A +HG+DS YF GW+ Y++N Y E NPSG+IQMGLAENQ+SFDLLE +L Q P
Sbjct: 4 LSRKATFNSHGQDSEYFLGWEEYEKNAYHEVENPSGIIQMGLAENQLSFDLLESWLAQNP 63
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
+A+ + + G FRE ALFQDYHGL +F++A+ FM +IRG + FD N++V+TAGAT+A
Sbjct: 64 DAAGFKRDGESIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVSFDQNKLVLTAGATSA 123
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE L F LA+PG+A L+PTPYYPGFDRDL+WRTG++IVPI C SSN FQIT ALE AY+
Sbjct: 124 NETLMFCLANPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCSSSNGFQITESALEEAYQ 183
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYXXXXXXXXXX 252
+A+ + ++V+GVLITNPSNPLG T R L L++F T K IHL+SDEIY
Sbjct: 184 QAQKRSLKVKGVLITNPSNPLGTTTSRDELNLLVNFITAKGIHLISDEIYSGTVFDSPGF 243
Query: 253 XXXXXXLEARQYKDSE---RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL 309
L R Y ++E RVHIVYSLSKDLGLPGFRVG IYS + VV+ A +MSSF L
Sbjct: 244 VSIMEVLMDRNYMNTEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDVAVVSAATKMSSFGL 303
Query: 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMN 369
+SSQTQYLL+ MLS+KKFT+NY+ N++RL++R+QM+I GL++AGI+CLK NAGLFCW++
Sbjct: 304 VSSQTQYLLSVMLSDKKFTKNYVSENQKRLKQRHQMLISGLQNAGIDCLKSNAGLFCWVD 363
Query: 370 LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKR 429
+ LL T E E+ LW +L++V+LNISPGSSCHC+EPGWFRVCFANMSE TL +AL+R
Sbjct: 364 MRHLLSSNTFEAEMELWKKILYDVRLNISPGSSCHCTEPGWFRVCFANMSEDTLNLALQR 423
Query: 430 IHNFMQKRERRRN 442
I F+ N
Sbjct: 424 IKAFVDSSTTTNN 436
|
|
| UNIPROTKB|Q00257 ACS2 "1-aminocyclopropane-1-carboxylate synthase CMA101" [Cucurbita maxima (taxid:3661)] | Back alignment and assigned GO terms |
|---|
Score = 1359 (483.5 bits), Expect = 7.2e-139, P = 7.2e-139
Identities = 252/425 (59%), Positives = 325/425 (76%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LS A +HG+DS YF GW+AY+ NP+ ++NP+G+IQMGLAENQ+SFDLLE +L + P
Sbjct: 4 LSTKATCNSHGQDSSYFLGWEAYENNPFHHTSNPNGIIQMGLAENQLSFDLLESWLSKNP 63
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
+A+++ + G FRE ALFQDYHGL +F++A+ FM +IRG + F+ N IV+TAGAT+A
Sbjct: 64 DAASFKRDGKSIFRELALFQDYHGLPAFKKALVEFMAEIRGNKVSFEANNIVLTAGATSA 123
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE L F LA+ GDA L+PTPYYPGFDRDL+WRTG++IVPIHC SSN FQIT ALE AYK
Sbjct: 124 NETLMFCLAEAGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITQSALEQAYK 183
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYXXXXXXXXXX 252
+A+++++RV+GVL+TNPSNPLG T+ R L + DF T K IHL+SDEIY
Sbjct: 184 DAQTRNLRVKGVLVTNPSNPLGTTMNRDELNLVFDFITSKGIHLISDEIYSGTVFGSPGF 243
Query: 253 XXXXXXLEARQYKDSE---RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL 309
L+ R +D E RVHIVYSLSKDLGLPGFRVG IYS +D VV A +MSSF L
Sbjct: 244 VSAMEVLKERSSEDEEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL 303
Query: 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMN 369
+SSQTQYLL++MLS+KKFT +YI N++RL++R +M++ GL+ AGI CL NAGLFCW++
Sbjct: 304 VSSQTQYLLSAMLSDKKFTISYISENQKRLKQRQKMLVSGLQKAGINCLDSNAGLFCWVD 363
Query: 370 LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKR 429
+ LLE E EL LW +++EV LNISPGSSCHC+EPGWFRVCFANMSE TL++A++R
Sbjct: 364 MRHLLESDKFESELELWKKIVYEVGLNISPGSSCHCTEPGWFRVCFANMSESTLKLAVRR 423
Query: 430 IHNFM 434
+ +F+
Sbjct: 424 LKSFV 428
|
|
| TAIR|locus:2137579 ACS8 "1-amino-cyclopropane-1-carboxylate synthase 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1356 (482.4 bits), Expect = 1.5e-138, P = 1.5e-138
Identities = 255/425 (60%), Positives = 327/425 (76%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LSK A THG+DS YF GW+ Y++NPY+E NP G+IQMGLAENQ+SFDL+E +L + P
Sbjct: 4 LSKKASCNTHGQDSSYFWGWEEYEKNPYDEIKNPDGIIQMGLAENQLSFDLIESWLAKNP 63
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
+A+ + + G FRE ALFQDYHGL SF+ AMA FM + RG R F+ N++V+TAGAT A
Sbjct: 64 DAANFQREGQSIFRELALFQDYHGLPSFKNAMADFMSENRGNRVSFNPNKLVLTAGATPA 123
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE L F LADPGDA L+PTPYYPGFDRDL+WRTG +IVPI C S+N F+IT ALE AY+
Sbjct: 124 NETLMFCLADPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIQCKSANGFRITKVALEEAYE 183
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYXXXXXXXXXX 252
+A+ +++V+GVLITNPSNPLG T R+ L LLDF +RK IHL+SDEIY
Sbjct: 184 QAQKLNLKVKGVLITNPSNPLGTTTTRTELNHLLDFISRKKIHLISDEIYSGTVFTNPGF 243
Query: 253 XXXXXXLEARQYKDSE---RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL 309
L+ R+ ++++ RVHIVYSLSKDLGLPGFRVG IYS +D VV+ A +MSSF L
Sbjct: 244 ISVMEVLKDRKLENTDVFDRVHIVYSLSKDLGLPGFRVGVIYSNDDFVVSAATKMSSFGL 303
Query: 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMN 369
ISSQTQYLL+++LS+K FT+NY++ N+ RL+ R++ ++ GL +AGIECLK NAGLFCW++
Sbjct: 304 ISSQTQYLLSALLSDKTFTKNYLEENQIRLKNRHKKLVSGLEAAGIECLKSNAGLFCWVD 363
Query: 370 LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKR 429
+ LL+ T E E+ LW +++EVKLNISPGSSCHC+EPGWFRVCFAN+SE+TL+VAL R
Sbjct: 364 MRHLLKSNTFEAEIELWKKIVYEVKLNISPGSSCHCNEPGWFRVCFANLSEETLKVALDR 423
Query: 430 IHNFM 434
+ F+
Sbjct: 424 LKRFV 428
|
|
| UNIPROTKB|O80334 O80334 "1-aminocyclopropane-1-carboxylate synthase" [Actinidia deliciosa (taxid:3627)] | Back alignment and assigned GO terms |
|---|
Score = 1354 (481.7 bits), Expect = 2.4e-138, P = 2.4e-138
Identities = 253/425 (59%), Positives = 322/425 (75%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LS+ A +HG+DS YF GW+ Y++ PY+E NP+G+IQMGLAENQ+SFDLLE +L P
Sbjct: 4 LSRKAACNSHGQDSSYFLGWQEYEKKPYDEVRNPTGIIQMGLAENQLSFDLLESWLANNP 63
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
E + + + G FRE ALFQDYHGL +F+ AM FM +IRG + FD ++V+TAGAT+A
Sbjct: 64 EPAGFMRDGQSIFRELALFQDYHGLPAFKNAMVDFMSEIRGNKVSFDPKKLVLTAGATSA 123
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE L F LA+PG+A L+PTPYYPGFDRDL+WRTG++IVPIHC S+N+FQIT ALE AY+
Sbjct: 124 NETLMFCLAEPGEAFLLPTPYYPGFDRDLQWRTGVEIVPIHCTSANSFQITDSALEEAYQ 183
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYXXXXXXXXXX 252
A+ +++RV+GVL+TNPSNPLG T+ R L LL F T KNIHL+SDEIY
Sbjct: 184 SAQKRNLRVKGVLVTNPSNPLGTTLTRPELNLLLTFITSKNIHLISDEIYSGTVFSSPDF 243
Query: 253 XXXXXXLEARQYKDS--ERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLI 310
L+ + RVHIVYSLSKDLGLPGFRVG IYS +D VV A +MSSF L+
Sbjct: 244 VSIMEVLKDSSHSTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDVVVAAATKMSSFGLV 303
Query: 311 SSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNL 370
SSQTQYLLASMLS+K FT++YI N++RL+KR +M+I GL+SAGI CLK NAGLFCW+++
Sbjct: 304 SSQTQYLLASMLSDKNFTKHYISENQKRLKKRQEMLISGLQSAGIGCLKSNAGLFCWVDM 363
Query: 371 SPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRI 430
LL ++ + E+ LW ++++V LNISPGSSCHCSEPGWFRVCFANMSE TL++A++RI
Sbjct: 364 RHLLSSKSFDSEMELWKKIVYQVGLNISPGSSCHCSEPGWFRVCFANMSEDTLDIAIQRI 423
Query: 431 HNFMQ 435
F+Q
Sbjct: 424 KTFVQ 428
|
|
| TAIR|locus:2097350 ACS9 "1-aminocyclopropane-1-carboxylate synthase 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1351 (480.6 bits), Expect = 5.1e-138, P = 5.1e-138
Identities = 250/432 (57%), Positives = 327/432 (75%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LS+ S HG+DS YF GW+ Y++NPY+E NP+G+IQMGLAENQ+ FDL+E +L + P
Sbjct: 4 LSRKVTSNAHGQDSSYFLGWEEYEKNPYDEIKNPNGIIQMGLAENQLCFDLIETWLAKNP 63
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
+A+ K G F+E ALFQDYHGL F++A+A FME+IRG R FD ++IV+ AG+T+A
Sbjct: 64 DAAGLKKDGQSIFKELALFQDYHGLPEFKKALAEFMEEIRGNRVTFDPSKIVLAAGSTSA 123
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE L F LA+PGDA L+PTPYYPGFDRDL+WRTG +IVPIHC SSN FQIT AL+ AY+
Sbjct: 124 NETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFQITESALQQAYQ 183
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYXXXXXXXXXX 252
+A+ D++V+GVL+TNPSNPLG + R L L+DF T KNIHL+SDEIY
Sbjct: 184 QAQKLDLKVKGVLVTNPSNPLGTMLTRRELNLLVDFITSKNIHLISDEIYSGTVFGFEQF 243
Query: 253 XXXXXXLEARQYKDSE---RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL 309
L+ + ++SE RVHIVYSLSKDLGLPGFRVG IYS ++ VV+ A +MSSF L
Sbjct: 244 VSVMDVLKDKNLENSEVSKRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFGL 303
Query: 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMN 369
+SSQTQYLL+++LS+KKFT Y+ N++RL+ R + ++ GL +AGI CLK NAGLFCW++
Sbjct: 304 VSSQTQYLLSALLSDKKFTSTYLDENQKRLKIRQKKLVSGLEAAGITCLKSNAGLFCWVD 363
Query: 370 LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKR 429
+ LL+ T E EL LW ++++VKLNISPGSSCHC+EPGWFRVCFANMSE TL++A+KR
Sbjct: 364 MRHLLDTNTFEAELELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLDLAMKR 423
Query: 430 IHNFMQKRERRR 441
+ +++ + RR
Sbjct: 424 LKEYVESTDSRR 435
|
|
| TAIR|locus:2169980 ACS5 "ACC synthase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1348 (479.6 bits), Expect = 1.1e-137, P = 1.1e-137
Identities = 248/429 (57%), Positives = 325/429 (75%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LS S HG+DS YF GW+ Y++NPY+E NP+G+IQMGLAENQ+ FDL+E +L + P
Sbjct: 4 LSTKVTSNGHGQDSSYFLGWEEYEKNPYDEIKNPNGMIQMGLAENQLCFDLIESWLTKNP 63
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
+A++ + G FRE ALFQDYHG+ F++AMA FME+IRG R FD +IV+ AG+T+A
Sbjct: 64 DAASLKRNGQSIFRELALFQDYHGMPEFKKAMAEFMEEIRGNRVTFDPKKIVLAAGSTSA 123
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE L F LA+PGDA L+PTPYYPGFDRDL+WRTG +IVPIHC SSN FQIT AL+ AY+
Sbjct: 124 NETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFQITESALQQAYQ 183
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYXXXXXXXXXX 252
+A+ D++V+GVL+TNPSNPLG + R L L+DF T KNIHL+SDEIY
Sbjct: 184 QAQKLDLKVKGVLVTNPSNPLGTALTRRELNLLVDFITSKNIHLISDEIYSGTMFGFEQF 243
Query: 253 XXXXXXLEARQYKDSE---RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL 309
L+ ++ +D+E RVH+VYSLSKDLGLPGFRVG IYS ++ +V+ A +MSSF L
Sbjct: 244 ISVMDVLKDKKLEDTEVSKRVHVVYSLSKDLGLPGFRVGAIYSNDEMIVSAATKMSSFGL 303
Query: 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMN 369
+SSQTQYLL+++LS+KKFT Y++ N++RL+ R + ++ GL SAGI CL+ NAGLFCW++
Sbjct: 304 VSSQTQYLLSALLSDKKFTSQYLEENQKRLKSRQRRLVSGLESAGITCLRSNAGLFCWVD 363
Query: 370 LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKR 429
+ LL+ T E EL LW +++ VKLNISPGSSCHC+EPGWFRVCFANMSE TL++ALKR
Sbjct: 364 MRHLLDTNTFEAELDLWKKIVYNVKLNISPGSSCHCTEPGWFRVCFANMSEDTLDLALKR 423
Query: 430 IHNFMQKRE 438
+ F++ +
Sbjct: 424 LKTFVESTD 432
|
|
| UNIPROTKB|O65028 ACS2 "Pollen-specific 1-aminocyclopropane-1-carboxylate synthase" [Petunia x hybrida (taxid:4102)] | Back alignment and assigned GO terms |
|---|
Score = 1338 (476.1 bits), Expect = 1.2e-136, P = 1.2e-136
Identities = 252/425 (59%), Positives = 322/425 (75%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LS+ A +HG+DS YF GW+ Y++NPY+E NP G+IQMGLAENQ+SFDLLE +L Q P
Sbjct: 4 LSEKATCNSHGQDSSYFLGWQEYEKNPYDEIQNPKGIIQMGLAENQLSFDLLESWLSQNP 63
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
+A+ + + G FRE ALFQDYHGL +F+ A+ FM +IRG + FD N++V+TAGAT+A
Sbjct: 64 DAAGFKRNGESIFRELALFQDYHGLPAFKNALVKFMAEIRGNKVTFDSNKLVLTAGATSA 123
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE L F LAD GDA L+PTPYYPGFDRDL+WRTG +IVPI C SSN F+IT ALE AY+
Sbjct: 124 NETLMFCLADRGDAFLLPTPYYPGFDRDLKWRTGAEIVPIQCTSSNGFRITESALEEAYQ 183
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYXXXXXXXXXX 252
EA+S+++RV+GVL+TNPSNPLG T+ R+ LE LL F K IHL+SDEIY
Sbjct: 184 EAKSRNLRVKGVLVTNPSNPLGTTLTRNELELLLSFVDTKGIHLISDEIYSGTVFNSPNF 243
Query: 253 XXXXXXLEARQYKDSE---RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL 309
L Y +E RVHIVYSLSKDLGLPGFRVG IYS ++ VV+ A +MSSF L
Sbjct: 244 VSVMEVLIENDYMYTEVWDRVHIVYSLSKDLGLPGFRVGAIYSNDELVVSAATKMSSFGL 303
Query: 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMN 369
ISSQTQYLL++MLS+KKF + Y+ N++RL+KR+ M++ GL++AGI CL+ NAGLFCW++
Sbjct: 304 ISSQTQYLLSAMLSDKKFRKKYVSENQKRLKKRHAMLVTGLQNAGISCLESNAGLFCWVD 363
Query: 370 LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKR 429
+ LL+ T E E+ LW ++++V LNISPGSSCHC+EPGWFRVCFANMSE TL +A+ R
Sbjct: 364 MRHLLKSNTFEAEIELWKEIVYQVGLNISPGSSCHCTEPGWFRVCFANMSEDTLTLAMAR 423
Query: 430 IHNFM 434
I +F+
Sbjct: 424 IKSFV 428
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q00379 | 1A12_CUCPE | 4, ., 4, ., 1, ., 1, 4 | 0.5627 | 0.9705 | 0.8684 | N/A | no |
| Q9MB95 | 1A11_PRUMU | 4, ., 4, ., 1, ., 1, 4 | 0.5744 | 0.9683 | 0.8699 | N/A | no |
| Q00257 | 1A12_CUCMA | 4, ., 4, ., 1, ., 1, 4 | 0.6117 | 0.9524 | 0.8863 | N/A | no |
| Q9STR4 | 1A17_ARATH | 4, ., 4, ., 1, ., 1, 4 | 0.7962 | 0.9705 | 0.9597 | yes | no |
| Q42881 | 1A13_SOLLC | 4, ., 4, ., 1, ., 1, 4 | 0.6056 | 0.9547 | 0.8997 | N/A | no |
| P37821 | 1A1C_MALDO | 4, ., 4, ., 1, ., 1, 4 | 0.5985 | 0.9524 | 0.8900 | N/A | no |
| Q01912 | 1A1C_VIGRR | 4, ., 4, ., 1, ., 1, 4 | 0.5760 | 0.8257 | 0.9918 | N/A | no |
| A2XLL2 | 1A11_ORYSI | 4, ., 4, ., 1, ., 1, 4 | 0.5707 | 0.9660 | 0.8767 | N/A | no |
| P18485 | 1A12_SOLLC | 4, ., 4, ., 1, ., 1, 4 | 0.5697 | 0.9524 | 0.8680 | N/A | no |
| P27486 | 1A1C_DIACA | 4, ., 4, ., 1, ., 1, 4 | 0.5424 | 0.9547 | 0.8162 | N/A | no |
| P23279 | 1A11_CUCPE | 4, ., 4, ., 1, ., 1, 4 | 0.5558 | 0.9705 | 0.8701 | N/A | no |
| P29535 | 1A14_SOLLC | 4, ., 4, ., 1, ., 1, 4 | 0.5496 | 0.9773 | 0.9075 | N/A | no |
| P23599 | 1A11_CUCMA | 4, ., 4, ., 1, ., 1, 4 | 0.5558 | 0.9705 | 0.8701 | N/A | no |
| Q07262 | 1A1C_TOBAC | 4, ., 4, ., 1, ., 1, 4 | 0.5721 | 0.9524 | 0.8574 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| ACS6 | 1-aminocyclopropane-1-carboxylate (EC-4.4.1.14) (440 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| ACO5 | 1-aminocyclopropane-1-carboxylate (EC-1.14.11.9) (303 aa) | • | • | 0.901 | |||||||
| ACO3 | SubName- Full=Putative uncharacterized protein; (320 aa) | • | • | 0.901 | |||||||
| ACO7 | 1-aminocyclopropane-1-carboxylate (EC-1.14.11.9) (319 aa) | • | • | 0.901 | |||||||
| ACO2 | SubName- Full=Putative uncharacterized protein; (311 aa) | • | • | 0.901 | |||||||
| estExt_fgenesh4_pg.C_LG_IV1398 | SubName- Full=Putative uncharacterized protein; (263 aa) | • | • | 0.900 | |||||||
| estExt_fgenesh4_kg.C_LG_IX0009 | 5'-methylthioadenosine nucleosidase (EC-3.2.2.16) (263 aa) | • | • | 0.900 | |||||||
| gw1.XVIII.3078.1 | S-adenosylmethionine decarboxylase (EC-4.1.1.50) (348 aa) | • | 0.899 | ||||||||
| DMT902 | DNA methyltransferase (1503 aa) | • | 0.899 | ||||||||
| gw1.X.5941.1 | spermine synthase (EC-2.5.1.22) (303 aa) | • | 0.899 | ||||||||
| gw1.VIII.2435.1 | S-adenosylmethionine decarboxylase (EC-4.1.1.50) (303 aa) | • | 0.899 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 442 | |||
| PLN02607 | 447 | PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl | 0.0 | |
| PLN02450 | 468 | PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl | 0.0 | |
| PLN02376 | 496 | PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl | 1e-178 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 1e-104 | |
| PLN02994 | 153 | PLN02994, PLN02994, 1-aminocyclopropane-1-carboxyl | 3e-73 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 4e-66 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 8e-62 | |
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 2e-36 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 8e-36 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 6e-34 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 4e-30 | |
| TIGR01265 | 403 | TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine | 9e-28 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 3e-27 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 1e-25 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 5e-25 | |
| PTZ00377 | 481 | PTZ00377, PTZ00377, alanine aminotransferase; Prov | 3e-23 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 4e-23 | |
| PTZ00433 | 412 | PTZ00433, PTZ00433, tyrosine aminotransferase; Pro | 8e-22 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 1e-21 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 3e-21 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 9e-21 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 2e-20 | |
| TIGR01264 | 401 | TIGR01264, tyr_amTase_E, tyrosine aminotransferase | 7e-20 | |
| PRK07337 | 388 | PRK07337, PRK07337, aminotransferase; Validated | 9e-20 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 1e-19 | |
| PLN02368 | 407 | PLN02368, PLN02368, alanine transaminase | 7e-19 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 5e-18 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 5e-18 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 7e-18 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 3e-17 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 3e-17 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 8e-17 | |
| TIGR03537 | 350 | TIGR03537, DapC, succinyldiaminopimelate transamin | 1e-16 | |
| PRK13355 | 517 | PRK13355, PRK13355, bifunctional HTH-domain contai | 6e-16 | |
| PRK05942 | 394 | PRK05942, PRK05942, aspartate aminotransferase; Pr | 1e-15 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 4e-15 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 1e-14 | |
| PLN02656 | 409 | PLN02656, PLN02656, tyrosine transaminase | 2e-14 | |
| PLN02231 | 534 | PLN02231, PLN02231, alanine transaminase | 2e-14 | |
| PRK09265 | 404 | PRK09265, PRK09265, aminotransferase AlaT; Validat | 2e-14 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 3e-14 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 4e-14 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 5e-14 | |
| PRK08068 | 389 | PRK08068, PRK08068, transaminase; Reviewed | 6e-14 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 9e-14 | |
| PRK08636 | 403 | PRK08636, PRK08636, aspartate aminotransferase; Pr | 1e-13 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 2e-13 | |
| PRK06290 | 410 | PRK06290, PRK06290, aspartate aminotransferase; Pr | 3e-13 | |
| PRK08912 | 387 | PRK08912, PRK08912, hypothetical protein; Provisio | 6e-13 | |
| PLN00145 | 430 | PLN00145, PLN00145, tyrosine/nicotianamine aminotr | 3e-12 | |
| PRK09148 | 405 | PRK09148, PRK09148, aminotransferase; Validated | 4e-12 | |
| PRK07366 | 388 | PRK07366, PRK07366, succinyldiaminopimelate transa | 6e-12 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 8e-12 | |
| PLN00143 | 409 | PLN00143, PLN00143, tyrosine/nicotianamine aminotr | 1e-11 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 1e-11 | |
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 2e-11 | |
| PRK09275 | 527 | PRK09275, PRK09275, aspartate aminotransferase; Pr | 8e-11 | |
| PLN02187 | 462 | PLN02187, PLN02187, rooty/superroot1 | 9e-11 | |
| TIGR03538 | 393 | TIGR03538, DapC_gpp, succinyldiaminopimelate trans | 4e-10 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 9e-10 | |
| TIGR03542 | 402 | TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr | 2e-09 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 6e-09 | |
| PRK14809 | 357 | PRK14809, PRK14809, histidinol-phosphate aminotran | 7e-09 | |
| TIGR03801 | 521 | TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla | 8e-09 | |
| TIGR03539 | 357 | TIGR03539, DapC_actino, succinyldiaminopimelate tr | 1e-08 | |
| PRK06855 | 433 | PRK06855, PRK06855, aminotransferase; Validated | 3e-08 | |
| PRK03967 | 337 | PRK03967, PRK03967, histidinol-phosphate aminotran | 2e-07 | |
| PRK12414 | 384 | PRK12414, PRK12414, putative aminotransferase; Pro | 3e-07 | |
| PRK08354 | 311 | PRK08354, PRK08354, putative aminotransferase; Pro | 1e-06 | |
| pfam01212 | 288 | pfam01212, Beta_elim_lyase, Beta-eliminating lyase | 1e-06 | |
| PRK06207 | 405 | PRK06207, PRK06207, aspartate aminotransferase; Pr | 4e-06 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 7e-06 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 9e-06 | |
| PRK07590 | 409 | PRK07590, PRK07590, L,L-diaminopimelate aminotrans | 1e-05 | |
| PRK09440 | 416 | PRK09440, avtA, valine--pyruvate transaminase; Pro | 1e-05 | |
| COG2008 | 342 | COG2008, GLY1, Threonine aldolase [Amino acid tran | 1e-05 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 1e-05 | |
| PRK03321 | 352 | PRK03321, PRK03321, putative aminotransferase; Pro | 3e-05 | |
| PRK08056 | 356 | PRK08056, PRK08056, threonine-phosphate decarboxyl | 3e-05 | |
| PRK05839 | 374 | PRK05839, PRK05839, hypothetical protein; Provisio | 3e-05 | |
| PRK15481 | 431 | PRK15481, PRK15481, transcriptional regulatory pro | 9e-05 | |
| PRK03158 | 359 | PRK03158, PRK03158, histidinol-phosphate aminotran | 3e-04 | |
| PRK00950 | 361 | PRK00950, PRK00950, histidinol-phosphate aminotran | 3e-04 | |
| PRK08637 | 388 | PRK08637, PRK08637, hypothetical protein; Provisio | 5e-04 | |
| PRK05166 | 371 | PRK05166, PRK05166, histidinol-phosphate aminotran | 6e-04 | |
| PLN03026 | 380 | PLN03026, PLN03026, histidinol-phosphate aminotran | 7e-04 | |
| COG3977 | 417 | COG3977, COG3977, Alanine-alpha-ketoisovalerate (o | 9e-04 | |
| TIGR02080 | 382 | TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t | 0.001 | |
| PRK09147 | 396 | PRK09147, PRK09147, succinyldiaminopimelate transa | 0.002 | |
| PRK01688 | 351 | PRK01688, PRK01688, histidinol-phosphate aminotran | 0.002 | |
| COG0399 | 374 | COG0399, WecE, Predicted pyridoxal phosphate-depen | 0.003 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 0.004 |
| >gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 904 bits (2337), Expect = 0.0
Identities = 384/441 (87%), Positives = 419/441 (95%), Gaps = 4/441 (0%)
Query: 1 MAIEIEQPSVSVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQV 60
MAIEI QP+V GLSKVAVSETHGEDSPYFAGWKAYDE+PY+ES NPSGVIQMGLAENQV
Sbjct: 2 MAIEIAQPAV--GLSKVAVSETHGEDSPYFAGWKAYDEDPYDESHNPSGVIQMGLAENQV 59
Query: 61 SFDLLEEYLEQQPEASTWG-KGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119
SFDLLEEYL+Q PEAS+WG KGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGG+A+FD
Sbjct: 60 SFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFD 119
Query: 120 LNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNN 179
+RIV+TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTG+KIVPIHCDSSNN
Sbjct: 120 PDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNN 179
Query: 180 FQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSD 239
FQ+TPQALEAAY+EAE+ ++RVRGVLITNPSNPLGAT+QRSVLE++LDF RKNIHLVSD
Sbjct: 180 FQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSD 239
Query: 240 EIYSGSAFSSSEFVSIAEILEARQYKD-SERVHIVYSLSKDLGLPGFRVGTIYSYNDKVV 298
EIYSGS FS+SEFVS+AEI+EAR YK +ERVHIVYSLSKDLGLPGFRVGTIYSYNDKVV
Sbjct: 240 EIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVV 299
Query: 299 TTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECL 358
TTARRMSSFTL+SSQTQ+LLASMLS+++FTENYI+TNRERL+KRY+MI++GLR AGIECL
Sbjct: 300 TTARRMSSFTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECL 359
Query: 359 KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANM 418
KGNAGLFCWMNLSPLLE TREGELALWDS+L EVKLNISPGSSCHCSEPGWFRVCFANM
Sbjct: 360 KGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANM 419
Query: 419 SEQTLEVALKRIHNFMQKRER 439
SE TLEVALKRIH FM +R+
Sbjct: 420 SEDTLEVALKRIHRFMDRRKT 440
|
Length = 447 |
| >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 703 bits (1817), Expect = 0.0
Identities = 263/433 (60%), Positives = 349/433 (80%), Gaps = 4/433 (0%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LS+ A +HG+DS YF GW+ Y++NPY+E NPSG+IQMGLAENQ+SFDL+E +L + P
Sbjct: 4 LSRKATCNSHGQDSSYFLGWEEYEKNPYDEIKNPSGIIQMGLAENQLSFDLIESWLAKNP 63
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
+A+ + G FRE ALFQDYHGL +F+ A+A FM +IRG + FD N++V+TAGAT+A
Sbjct: 64 DAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSA 123
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE L F LA+PGDA L+PTPYYPGFDRDL+WRTG++IVPIHC SSN FQIT ALE AY+
Sbjct: 124 NETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQ 183
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252
+A+ +++V+GVLITNPSNPLG T R+ L L+DF T KNIHL+SDEIYSG+ F S F
Sbjct: 184 QAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGF 243
Query: 253 VSIAEILEARQYKDSE---RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL 309
VS+ E+L+ R+ ++++ RVHIVYSLSKDLGLPGFRVG IYS ++ VV+ A +MSSF L
Sbjct: 244 VSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFGL 303
Query: 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMN 369
+SSQTQYLL+++LS+KKFT+NY++ N++RL++R + ++ GL +AGI+CLK NAGLFCW++
Sbjct: 304 VSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLFCWVD 363
Query: 370 LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKR 429
+ LL+ T E E+ LW +++EVKLNISPGSSCHC+EPGWFRVCFANMSE+TL++A+KR
Sbjct: 364 MRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKR 423
Query: 430 IHNFMQKRERRRN 442
+ +F++ RR
Sbjct: 424 LKSFVESDSGRRI 436
|
Length = 468 |
| >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 506 bits (1305), Expect = e-178
Identities = 228/431 (52%), Positives = 317/431 (73%), Gaps = 4/431 (0%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LSK+A ++ HGE+S YF GWKAYD++P+ S NP G+IQMGLAENQ+ DL+++++++ P
Sbjct: 12 LSKIATNDQHGENSEYFDGWKAYDKDPFHLSRNPHGIIQMGLAENQLCLDLIKDWVKENP 71
Query: 74 EASTWG-KGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
EAS +G F + A FQDYHGLK FRQA+A FM + RGG+ FD R+V++ GAT A
Sbjct: 72 EASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGA 131
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE + F LADPGD L+P+PYY FDRDLRWRTG++I+P+ C SS+NF++T A + AYK
Sbjct: 132 NETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYK 191
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252
+A+ + +V+G+++TNPSNPLG + + L L+ F TRKNIHLV DEIY+ + F+ +F
Sbjct: 192 KAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDF 251
Query: 253 VSIAEILEARQYKD--SERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLI 310
VS+AE++ + + +HIVYSLSKD+GLPGFRVG +YS+ND VV+ AR+MSSF L+
Sbjct: 252 VSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSFGLV 311
Query: 311 SSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNL 370
SSQTQ +LASMLS+ +F +N++ + RL R+++ G++ A I CL NAGLF WM+L
Sbjct: 312 SSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMDL 371
Query: 371 SPLLEEQTR-EGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKR 429
LL ++ E E+ LW ++ +VKLN+SPGSS C+EPGWFR+CFANM + TL VAL R
Sbjct: 372 RHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGR 431
Query: 430 IHNFMQKRERR 440
I +F+ K + +
Sbjct: 432 IQDFVSKNKNK 442
|
Length = 496 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 313 bits (803), Expect = e-104
Identities = 123/385 (31%), Positives = 181/385 (47%), Gaps = 32/385 (8%)
Query: 50 VIQMGLAENQVSFD--LLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASF 107
++ L N+ D L + + +A L+ GL R+A+A F
Sbjct: 1 TDKINLGSNEYLGDSGTLPAVAKAEKDALA-------GGTRNLYGPTDGLPELREALAKF 53
Query: 108 MEQIRGGRAKFDLNR-IVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRT 165
+ R K D +V +GA A E L F+L +PGDA+LVP P YP + R R
Sbjct: 54 LG--RSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLA- 110
Query: 166 GIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEEL 225
G ++V SSN+F + ALEAA KEA + VL T+P NP G LE+L
Sbjct: 111 GGEVVRYPLYSSNDFHLDFDALEAALKEATE---GNKVVLHTSPHNPTGTVATLEELEKL 167
Query: 226 LDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285
LD A NI L+ DE Y+G F S + V+ +L + +V S SK GL G+
Sbjct: 168 LDLAKEHNILLLVDEAYAGFVFGSLDAVATRALLAEGPN-----LLVVGSFSKAFGLAGW 222
Query: 286 RVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQM 345
RVG I N V++ R+++ S+ Q A+ LS+ + ++ R+R+++R
Sbjct: 223 RVGYILG-NAAVISQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQRIKERRDY 281
Query: 346 IIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC 405
+ +GL +AG+ L AG F L P L +L EV + ++PGSS
Sbjct: 282 LRDGLEAAGLSVLPSQAGFFLLTGLDPEAALA-------LAQVLLEEVGVYVTPGSSFGG 334
Query: 406 SEPGWFRVCFANMSEQTLEVALKRI 430
PGW R+ A +E+ LE L+ I
Sbjct: 335 --PGWLRITVAGGTEEELEELLEAI 357
|
Length = 357 |
| >gnl|CDD|166635 PLN02994, PLN02994, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 226 bits (577), Expect = 3e-73
Identities = 87/145 (60%), Positives = 112/145 (77%), Gaps = 2/145 (1%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LSK+A+++ HGE SPYFAGWKAYD NP++ NP G+IQMGLAENQ+ DL+EE++E+ P
Sbjct: 9 LSKLALADKHGEASPYFAGWKAYDLNPFDLLHNPQGIIQMGLAENQLCSDLIEEWIEENP 68
Query: 74 EAS--TWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATA 131
A T F++ ALFQDYHGL +FR+A+A+FM + RGGR KFD + IV++AGATA
Sbjct: 69 HADICTAEGTIDSFKDIALFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATA 128
Query: 132 ANELLTFILADPGDALLVPTPYYPG 156
ANE++ F +ADPGDA LVPTPYY
Sbjct: 129 ANEIIMFCIADPGDAFLVPTPYYAA 153
|
Length = 153 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 214 bits (548), Expect = 4e-66
Identities = 100/349 (28%), Positives = 169/349 (48%), Gaps = 29/349 (8%)
Query: 86 RENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGD 145
+ GL R+A+A ++ + G IVVT GA A LL L +PGD
Sbjct: 27 AGLLGYYPDPGLPELREAIAEWLGRRGG--VDVPPEEIVVTNGAQEALSLLLRALLNPGD 84
Query: 146 ALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205
+LVP P YPG++ R G ++VP+ D F + + LEAA + + +
Sbjct: 85 EVLVPDPTYPGYEAAAR-LAGAEVVPVPLDEEGGFLLDLELLEAAKTP------KTKLLY 137
Query: 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYK 265
+ NP+NP GA + LEEL + A + I ++SDE Y+ + +L+A
Sbjct: 138 LNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPP-PALALLDAY--- 193
Query: 266 DSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLI--SSQTQYLLASMLS 323
ERV ++ S SK GLPG R+G + + ++++ +++ +T S+ +Q A+ L
Sbjct: 194 --ERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALD 251
Query: 324 NKKFTENYIKTNRERLQKRYQMIIEGLRSAGIE-CLKGNAGLFCWMNLSPLLEEQTREGE 382
+ E +++ RER ++R ++E L+ G +K + G F W++L +E
Sbjct: 252 D---GEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDE------ 302
Query: 383 LALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIH 431
+ +L E + + PGS+ G+ R+ FA E+ LE AL+R+
Sbjct: 303 -EFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFAT-PEEELEEALERLA 349
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 8e-62
Identities = 94/352 (26%), Positives = 170/352 (48%), Gaps = 27/352 (7%)
Query: 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTP 152
G+ R+A+A ++ G + I+VTAGA A L L +PGD +L+P P
Sbjct: 63 PSAGIPELREAIAEKYKRRYGLDVDPE-EEIIVTAGAKEALFLAFLALLNPGDEVLIPDP 121
Query: 153 YYPGFDRDLRWRTGIKIVPIHCDSS-NNFQITPQALEAAYKEAESKDMRVRGVLITNPSN 211
YP ++ ++ G K VP+ D N F+ + LEAA + + +++ +P+N
Sbjct: 122 GYPSYEAAVKLA-GGKPVPVPLDEEENGFKPDLEDLEAAITP------KTKAIILNSPNN 174
Query: 212 PLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVH 271
P GA + L+ +++ A +I ++SDEIY + +E SI E+ AR +R
Sbjct: 175 PTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGAR-----DRTI 229
Query: 272 IVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLI--SSQTQYLLASMLSNKKFTE 329
+ S SK G+ G+R+G + ++++ R++ S+ + QY + L+ + E
Sbjct: 230 TINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDE 289
Query: 330 NYIKTNRERLQKRYQMIIEGL-RSAGIECLKG-NAGLFCWMNLSPLLEEQTREGELALWD 387
++ RE ++R +++E L G+ +K + + + LL+ + E A
Sbjct: 290 -VVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELLDSE----EFAKK- 343
Query: 388 SMLHEVKLNISPGSS-CHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438
+L E + + PGS G+ R+ A SE+TLE AL+R+ F+ +
Sbjct: 344 -LLEEAGVAVVPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRLARFLAEYR 393
|
Length = 393 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 91/350 (26%), Positives = 170/350 (48%), Gaps = 34/350 (9%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPY 153
G+ R+A+A+ ++ R +D ++++VT GA A L +A DPGD +++P PY
Sbjct: 69 GIPELREAIAAKLK--RDNGLDYDPSQVIVTTGAKQA--LYNAFMALLDPGDEVIIPAPY 124
Query: 154 YPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPL 213
+ + ++ G V + N F++T + LEAA + + +++ +PSNP
Sbjct: 125 WVSYPEMVKL-AGGVPVFVPTGEENGFKLTVEQLEAAITP------KTKALILNSPSNPT 177
Query: 214 GATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIV 273
GA LE + D A +I ++SDEIY + +EF SIA + +R V
Sbjct: 178 GAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPEL----RDRTITV 233
Query: 274 YSLSKDLGLPGFRVGTIYSY---NDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFT 328
SK + G+R+G Y +++ ++ S + +S QY + L+
Sbjct: 234 NGFSKAYAMTGWRLG----YAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNG---P 286
Query: 329 ENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSPLLEEQTREGELALWD 387
++ ++ R+ ++R ++++GL G+EC K + + N+S LL ++ L +
Sbjct: 287 QDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLL-GKSITDSLEFAE 345
Query: 388 SMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437
++L E + + PG + PG+ R+ +A S + LE L+RI F++
Sbjct: 346 ALLEEAGVAVVPGIA--FGAPGYVRLSYAT-SLEDLEEGLERIERFLESL 392
|
Length = 393 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 8e-36
Identities = 100/357 (28%), Positives = 172/357 (48%), Gaps = 48/357 (13%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDL-----NRIVVTAGATAA-NELLTFILADPGDALLV 149
GL RQA A F+++ K++L N I+VT GAT A + LT IL +PGD +L+
Sbjct: 68 GLLELRQAAADFVKE------KYNLDYAPENEILVTIGATEALSASLTAIL-EPGDKVLL 120
Query: 150 PTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNP 209
P P YPG++ + G +IV I + N+F +TP+ LE A E K ++ V++ P
Sbjct: 121 PAPAYPGYEPIVNL-VGAEIVEIDT-TENDFVLTPEMLEKAILEQGDK---LKAVILNYP 175
Query: 210 SNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSER 269
+NP G T R ++ L D + +I ++SDE+YS ++ VSIAE L ++
Sbjct: 176 ANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYL-------PDQ 228
Query: 270 VHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTE 329
++ LSK + G+R+G I++ TA+ LI S QYL+ + + +F
Sbjct: 229 TILINGLSKSHAMTGWRIGLIFA---PAEFTAQ------LIKSH-QYLVTAATTMAQFAA 278
Query: 330 NYIKTN--------RERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREG 381
TN ++ KR IIE + G + +K + + + + + +
Sbjct: 279 VEALTNGKDDALPMKKEYIKRRDYIIEKMTDLGFKIIKPDGAFYIFAKIPAGYNQDSF-- 336
Query: 382 ELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438
+ + PG++ G+ R+ +A S +T++ A+KR+ +M++
Sbjct: 337 --KFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA-ASMETIKEAMKRLKEYMEEHA 390
|
Length = 391 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 6e-34
Identities = 89/361 (24%), Positives = 153/361 (42%), Gaps = 46/361 (12%)
Query: 86 RENALFQDYH--GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADP 143
+ Q GL R+A+A+++ RG + +IV+T+GA A +LL +L DP
Sbjct: 121 GASLALQYGPTAGLPELREAIAAYLLARRGISC--EPEQIVITSGAQQALDLLLRLLLDP 178
Query: 144 GDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRG 203
GD +LV P YPG + L G +++P+ D I P+ALE A + + +
Sbjct: 179 GDTVLVEDPTYPGALQALE-ALGARVIPVPVDEDG---IDPEALEEALAQ-----WKPKA 229
Query: 204 VLITNPS--NPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEA 261
V P+ NP G T+ + LL A + ++ ++ D+ Y E
Sbjct: 230 V-YVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYY-------GELRYDGPPPPP 281
Query: 262 RQYKDSERVHIVY--SLSKDLGLPGFRVGTI---YSYNDKVVTTARRMSSFTLISSQTQY 316
+ D+ ++Y S SK L PG R+G + +K++ + SS +Q
Sbjct: 282 LKALDAPG-RVIYLGSFSKTL-APGLRLGYVVAPPELIEKLLRLKQAADLGP--SSLSQA 337
Query: 317 LLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECL---KGNAGLFCWMNLSPL 373
LA+ L + + +++ R +R ++E L E + GLF W+
Sbjct: 338 ALAAFLLSGHYDR-HLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLE---- 392
Query: 374 LEEQTREGELALWDSMLHEVKLNISPGS---SCHCSEPGWFRVCFANMSEQTLEVALKRI 430
L E EL + E + ++P S R+ F++ SE+ +E +KR+
Sbjct: 393 LPEGIDARELL---AAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRL 449
Query: 431 H 431
Sbjct: 450 A 450
|
Length = 459 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 4e-30
Identities = 100/353 (28%), Positives = 171/353 (48%), Gaps = 39/353 (11%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLN-----RIVVTAGATAANELLTFILADPGDALLVP 150
GL R+A +F++ K+DL+ I+VT GA+ A ++ + +PG +++P
Sbjct: 66 GLLELRKAACNFVKD------KYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILP 119
Query: 151 TPYYPGFDRDLRWRTGIKIVPIHCD-SSNNFQITPQALEAAYKEAESKDMRVRGVLITNP 209
P YPG++ +R G K P+ D S F++T +ALE A E + R V++ P
Sbjct: 120 APIYPGYEPIIRL-CGAK--PVFIDTRSTGFRLTAEALENAITE------KTRCVVLPYP 170
Query: 210 SNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSER 269
SNP G T+ + L+++ D KNI ++SDEIYS + SIA E R E+
Sbjct: 171 SNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVY-EQPHTSIAHFPEMR-----EK 224
Query: 270 VHIVYSLSKDLGLPGFRVGTIY--SYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKF 327
++ LSK + G+R+G ++ SY K + + + T SS +QY L+ K
Sbjct: 225 TIVINGLSKSHSMTGWRIGFLFAPSYLAKHILKVHQYNV-TCASSISQYAALEALTAGK- 282
Query: 328 TENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWD 387
+ K R + +KR + L S G++ K + + ++ + AL
Sbjct: 283 --DDAKMMRHQYKKRRDYVYNRLISMGLDVEKPTGAFYLFPSIGHFTMSSF---DFAL-- 335
Query: 388 SMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRERR 440
++ E L + PGS+ G+ R+ +A S +TL+ L R+ F+Q++ +
Sbjct: 336 DLVEEAGLAVVPGSAFSEYGEGYVRLSYA-YSIETLKEGLDRLEAFLQQKAKS 387
|
Length = 387 |
| >gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 9e-28
Identities = 78/352 (22%), Positives = 152/352 (43%), Gaps = 35/352 (9%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
G + R+A+A ++ K + +V+T+G + A E+ LA+PG +LVP P +P
Sbjct: 74 GALAAREAVAEYLSS--DLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFP 131
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA 215
+D + +G+++ +++I LE+ D + +++ NPSNP G+
Sbjct: 132 LYDTRAAF-SGLEVRLYDLLPEKDWEIDLDGLESL------ADEKTVAIVVINPSNPCGS 184
Query: 216 TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVY- 274
R L+++ + A + I +++DEIY F + F+ +A + V ++
Sbjct: 185 VFSRDHLQKIAEVAEKLGIPIIADEIYGHMVFGDAPFIPMASF--------ASIVPVLSL 236
Query: 275 -SLSKDLGLPGFRVGTIYSYN------DKVVTTARRMSSFTLISSQ-TQYLLASMLSNKK 326
+SK +PG+R+G I ++ D V+ + + L + Q L +L N
Sbjct: 237 GGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRILGPATIVQGALPDILENTP 296
Query: 327 FTENYIKTNRERLQKRYQMIIEGLRS-AGIECLKGNAGLFCWMNLS-PLLEEQTREGELA 384
+ + L+ ++ E L+ G+ C K ++ + L L E + ++
Sbjct: 297 --QEFFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELFPEI--KDDVD 352
Query: 385 LWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436
+ + E + PGS+ P W R+ E A RI F ++
Sbjct: 353 FCEKLAREESVICLPGSA--FGLPNWVRITITVPESMLEE-ACSRIKEFCER 401
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-27
Identities = 71/265 (26%), Positives = 120/265 (45%), Gaps = 36/265 (13%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFI-LADPGDALLVPTPYY 154
G+ R+A A + ++ + + I++T G + A L + + DPGD +LVP P+Y
Sbjct: 67 GIPELREAFAKYYKKWG---IDVEPDEILITNGGSEA-ILFAMMAICDPGDEILVPEPFY 122
Query: 155 P---GFDRDLRWRTGIKIVPIHCDSSNNFQITP-QALEAAYKEAESKDMRVRGVLITNPS 210
GF G+KIVP+ F + + +E + + +LI+NP
Sbjct: 123 ANYNGFATSA----GVKIVPVTTKIEEGFHLPSKEEIEKLITP------KTKAILISNPG 172
Query: 211 NPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERV 270
NP G + LE L + A + ++ L+SDE+Y + ++ S + +RV
Sbjct: 173 NPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGL-----EDRV 227
Query: 271 HIVYSLSKDLGLPGFRVGTIYSYNDKVVTTA-----RRMSSFTLISSQTQYLLASMLSNK 325
I+ S+SK G R+G + S N +++ A R+S TL Q A++L
Sbjct: 228 IIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQARLSPPTL----EQIGAAALLDT- 282
Query: 326 KFTENYIKTNRERLQKRYQMIIEGL 350
E+Y RE +KR ++ E L
Sbjct: 283 --PESYFDEVREEYKKRRDILYEEL 305
|
Length = 397 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 83/350 (23%), Positives = 163/350 (46%), Gaps = 36/350 (10%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDL-----NRIVVTAGATAANELLTFILADPGDALLVP 150
GL RQ +A ++++ +F + + I+VT GA+ A ++ + +PGD +L+
Sbjct: 58 GLLELRQEIAKYLKK------RFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIV 111
Query: 151 TPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPS 210
P + + L G VP+ N F++ P +EAA + + +L+ +P+
Sbjct: 112 EPSFVSYA-PLVTLAGGVPVPVATTLENEFKVQPAQIEAAITA------KTKAILLCSPN 164
Query: 211 NPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERV 270
NP GA + +S LEE+ + ++ ++SDEIY+ + + S A I R ER
Sbjct: 165 NPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTY-DEAYTSFASIKGMR-----ERT 218
Query: 271 HIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTEN 330
++ SK + G+R+G I + ++ ++++ + T A++ + + ++
Sbjct: 219 ILISGFSKGFAMTGWRLGFIAAPVY-FSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDD 277
Query: 331 YIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSP--LLEEQTREGELALWDS 388
I+ R+ +KR + G+ C + + ++S L E+ E
Sbjct: 278 VIRM-RDSYRKRRNFFVTSFNEIGLTCHVPGGAFYAFPSISSTGLSSEEFAE-------Q 329
Query: 389 MLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438
+L E K+ + PGS S G+ R +A EQ L+ A+KR+ F++ ++
Sbjct: 330 LLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQ-LQEAMKRMKRFVENKK 378
|
Length = 378 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 5e-25
Identities = 95/352 (26%), Positives = 149/352 (42%), Gaps = 63/352 (17%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA-NELLTFILADPGDALLVPTPYY 154
G R+A+A + + G + IV+T GA A N L IL +PGD ++V PY+
Sbjct: 74 GYPEVREAIAESLNRRFG--TPLTADHIVMTCGAAGALNVALKAIL-NPGDEVIVFAPYF 130
Query: 155 P--GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP 212
F D G K+V + D+ + FQ ALEAA + + V+I +P+NP
Sbjct: 131 VEYRFYVD---NHGGKLVVVPTDT-DTFQPDLDALEAAITP------KTKAVIINSPNNP 180
Query: 213 LGATIQRSVLEELLDFATRKN------IHLVSDEIYSGSAFSSSEFVSIAEILEARQYKD 266
G L+ L K+ I+L+SDE Y + +E I + Y +
Sbjct: 181 TGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKY-----YDN 235
Query: 267 SERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLI---------SSQTQYL 317
S +VYS SK L LPG R+G I N ++ +++ + Q +
Sbjct: 236 S---IVVYSFSKSLSLPGERIGYIAV-NPEMEDADDLVAALVFANRILGFVNAPALMQRV 291
Query: 318 LASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSP--LLE 375
+A L Y K NR+ ++ +GL G EC+K + + P E
Sbjct: 292 VAKCLDATVDVSIY-KRNRD-------LLYDGLTELGFECVKPQGAFYLF----PKSPEE 339
Query: 376 EQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVAL 427
+ E A + L + PGS C PG+FR+ + + +T+E +L
Sbjct: 340 DDVAFCEKAK------KHNLLLVPGSGFGC--PGYFRLSYC-VDTETIERSL 382
|
Length = 394 |
| >gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-23
Identities = 78/283 (27%), Positives = 143/283 (50%), Gaps = 19/283 (6%)
Query: 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANEL-LTFILADPGDALLV 149
+ D G R+A+A+F+E+ R G K D + I +T GA++ +L L ++ DP D +++
Sbjct: 111 YTDSAGYPFVRKAVAAFIER-RDGVPK-DPSDIFLTDGASSGIKLLLQLLIGDPSDGVMI 168
Query: 150 PTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNP 209
P P YP + + G K VP + D + + + LE AY++A + R +++ NP
Sbjct: 169 PIPQYPLYSAAIT-LLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINP 227
Query: 210 SNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS-EFVSIAEILEARQYKDSE 268
NP G + R V+EE++ F K I L++DE+Y + + F+S ++L + +
Sbjct: 228 GNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNT 287
Query: 269 RVHIV--YSLSKDL-GLPGFRVG--TIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLS 323
V +V +S SK + G G R G + + +V +++S L S+ L+ ++
Sbjct: 288 DVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASINLCSNVVGQLMTGLMC 347
Query: 324 N--KKFTENYIKTNRER------LQKRYQMIIEGLRSA-GIEC 357
N ++ +Y RER L++R +++ + L G+ C
Sbjct: 348 NPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSC 390
|
Length = 481 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 4e-23
Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
GL + R+A+A F Q G D RI+VT G + A L + +L DPG L+ P YP
Sbjct: 70 GLPALREAIAGFYAQRYG--VDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYP 127
Query: 156 GFDRDLRWRTGIKI-VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLG 214
LR G VP+ DS +Q+TP +E + G L+ +P+NP G
Sbjct: 128 CNRHFLRLVEGAAQLVPVGPDS--RYQLTPALVERHWNA------DTVGALVASPANPTG 179
Query: 215 ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVY 274
+ R L L + HLV DEIY G + V A +LE + ++
Sbjct: 180 TLLSRDELAALSQALRARGGHLVVDEIYHGLTYG----VDAASVLEV-----DDDAFVLN 230
Query: 275 SLSKDLGLPGFRVG 288
S SK G+ G+R+G
Sbjct: 231 SFSKYFGMTGWRLG 244
|
Length = 387 |
| >gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 8e-22
Identities = 72/325 (22%), Positives = 146/325 (44%), Gaps = 28/325 (8%)
Query: 123 IVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQI 182
+V+ +G + A + L D GD +LVP P +P ++ + GI++ +C ++
Sbjct: 107 VVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKA-YGIEMRFYNCRPEKDW-- 163
Query: 183 TPQALEAAYKEAES-KDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEI 241
EA E D R + +++TNPSNP G+ R +E+++ + L+SDEI
Sbjct: 164 -----EADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEI 218
Query: 242 YSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVG-TIY----SYNDK 296
Y+G F+ + F S+A+ + + I+ +K+L +PG+R+G +
Sbjct: 219 YAGMVFNGATFTSVAD------FDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGD 272
Query: 297 VVTTARRMSSFTL-ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-G 354
+ +R+ S Q L L N + +++ +L++ ++ + G
Sbjct: 273 FLDGMKRLGMLVCGPCSVVQAALGEALLNTP--QEHLEQIVAKLEEGAMVLYNHIGECIG 330
Query: 355 IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVC 414
+ +F L L + + + ++ ++ +L E + + PG H PG+ R+
Sbjct: 331 LSPTMPRGSMFLMSRLD-LEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHM--PGFTRLT 387
Query: 415 FANMSEQTLEVALKRIHNFMQKRER 439
+ E L A++RI F ++ ++
Sbjct: 388 ISRPVE-VLREAVERIKAFCERHKK 411
|
Length = 412 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 1e-21
Identities = 89/355 (25%), Positives = 152/355 (42%), Gaps = 33/355 (9%)
Query: 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVP 150
+ GL R+A+ E+ + G + + VTA T A +L+ L DPGD +L+P
Sbjct: 66 YGPSEGLPELREAIV-KREKRKNG-VDITPDDVRVTAAVTEALQLIFGALLDPGDEILIP 123
Query: 151 TPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPS 210
P YP + +++ G+ V +Q + E + + + + NP+
Sbjct: 124 GPSYPPYTGLVKFYGGVP-VEYRTIEEEGWQPDIDDIRKKITE------KTKAIAVINPN 176
Query: 211 NPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERV 270
NP GA ++ L+E+LD A ++ ++SDEIY + + VS + KD V
Sbjct: 177 NPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTY-EGKHVSPGSLT-----KDVP-V 229
Query: 271 HIVYSLSKDLGLPGFRVGTIYSYN--DKVVTTARRMSSFTLI----SSQTQY-LLASMLS 323
++ LSK G+R+G IY + K+ + I ++ Q+ +A +
Sbjct: 230 IVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTG 289
Query: 324 NKKFTENYIKTNRERLQKRYQMIIEGLRS-AGIECLKGNAGLFCWMNLSPLLEEQTREGE 382
+ E Y+K +L++R I + L GI K + + P +EE + +
Sbjct: 290 PMDYLEEYMK----KLKERRDYIYKRLNEIPGISTTKPQGAFYIF----PRIEEGPWKDD 341
Query: 383 LALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437
+LHE + GS G FR+ F E LE A+ R FM++R
Sbjct: 342 KEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEI-LEEAMDRFEEFMRER 395
|
Length = 398 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 3e-21
Identities = 89/364 (24%), Positives = 157/364 (43%), Gaps = 56/364 (15%)
Query: 87 ENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT---AGATAANELLTFILADP 143
EN + Y G+ ++RQA+A + ++ G + D V++ + A+ L F+ +P
Sbjct: 59 ENHRYPSYEGMLAYRQAVADWYKRRFG--VELDPETEVLSLIGSKEGIAHIPLAFV--NP 114
Query: 144 GDALLVPTPYYPGFDRDLRWRTGIKI-------VPIHCDSSNNFQITPQALEAAYKEAES 196
GD +LVP P YP + R G +P+ + N F A+ E
Sbjct: 115 GDIVLVPDPGYPVY------RIGTLFAGGEPYEMPLKEE--NGFLPDFDAIP------ED 160
Query: 197 KDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIA 256
+ + + I P+NP GA +EL++FA NI + D YS F + S
Sbjct: 161 IAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFL 220
Query: 257 EILEARQYKDSERVHI-VYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS------FTL 309
E+ ++ V I +SLSK + G+R+G + N ++ ++ + F
Sbjct: 221 EV------DGAKDVGIEFHSLSKTYNMTGWRIG-MAVGNADLIAGLGKVKTNVDSGVFQA 273
Query: 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMN 369
I QY + L+ ++ +K R+ Q+R +++E L+ GI+ K A + W+
Sbjct: 274 I----QYAAIAALNG---PQDVVKEIRKIYQRRRDLLLEALKKIGIDVEKPKATFYVWV- 325
Query: 370 LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKR 429
P+ E T A +L E + ++PG G+ R+ + ++ LE A+ R
Sbjct: 326 --PVPEGYTSAEFAAR---LLEETGVVVTPGVGFGEYGEGYIRISL-TVPDERLEEAVAR 379
Query: 430 IHNF 433
I
Sbjct: 380 IKKL 383
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 9e-21
Identities = 82/352 (23%), Positives = 148/352 (42%), Gaps = 42/352 (11%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
G+ R+A+A ++ ++ G RI VT+ A L L PGD ++ TP +P
Sbjct: 62 GIPELREALARYVSRLHGVA--TPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWP 119
Query: 156 GFDRDLRWRTGIKIVPIHCD-SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLG 214
+ G ++V + D + + L AA R R + I +P+NP G
Sbjct: 120 NLVAAPKIL-GARVVCVPLDFGGGGWTLDLDRLLAAITP------RTRALFINSPNNPTG 172
Query: 215 ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE----FVSIAEILEARQYKDSERV 270
T R L +L R + +V+DE+Y ++ F+ IAE +R+
Sbjct: 173 WTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAE--------PDDRI 224
Query: 271 HIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT-LISSQT----QYLLASMLSNK 325
V S SK+ + G+R+G + V LI T Q++ + ++
Sbjct: 225 IFVNSFSKNWAMTGWRLGWL-------VAPPALGQVLEKLIEYNTSCVAQFVQRAAVAAL 277
Query: 326 KFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSPLLEEQTREGELA 384
E+++ RL++ +++ LR+ G+E K + M + T LA
Sbjct: 278 DEGEDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGA----MYAFFRIPGVTDSLALA 333
Query: 385 LWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436
++ E L ++PG++ G+ R CFA + L+ A++R+ F+ +
Sbjct: 334 K--RLVDEAGLGLAPGTAFGPGGEGFLRWCFARDPAR-LDEAVERLRRFLAR 382
|
Length = 382 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 2e-20
Identities = 90/348 (25%), Positives = 153/348 (43%), Gaps = 37/348 (10%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPY-- 153
G + R+A+ + +E+ G + N I V GA A L + GD +++P PY
Sbjct: 71 GTPALRKAIIAKLERRNGLH--YADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWV 128
Query: 154 -YPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP 212
YP D+ V + C F++TP+ALEAA R R +++ PSNP
Sbjct: 129 SYP----DMVLANDGTPVIVACPEEQGFKLTPEALEAAITP------RTRWLILNAPSNP 178
Query: 213 LGATIQRSVLEELLDFATR-KNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVH 271
GA R+ L L D R ++ +++D+IY F + A + +D RV
Sbjct: 179 TGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAA--APELRD--RVL 234
Query: 272 IVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS-SFTLISSQTQYLLASML-SNKKFTE 329
+ +SK + G+R+G D + + S S + SS +Q A+ L ++ F
Sbjct: 235 VTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVT 294
Query: 330 NYIKTNRERLQKRYQMI--IEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWD 387
+ ++R ++ I GL CL + + ++N + L+ + T EG++ D
Sbjct: 295 ESVAVYKQRRDYALALLNAIPGL-----SCLVPDGAFYLYVNCAGLIGKTTPEGKVLETD 349
Query: 388 S-----MLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRI 430
+L + + G++ S +FR+ A S +TLE A RI
Sbjct: 350 QDVVLYLLDSAGVAVVQGTAYGLSP--YFRLSIAT-SLETLEEACARI 394
|
Length = 402 |
| >gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 7e-20
Identities = 88/359 (24%), Positives = 159/359 (44%), Gaps = 57/359 (15%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
G S R+A+AS+ + + +V+ +G + A E+ LA+ G +LVP P +P
Sbjct: 74 GALSAREAIASYY---HNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFP 130
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAES-KDMRVRGVLITNPSNPLG 214
+ R L GI++ + ++ E K+ ES D + +++ NPSNP G
Sbjct: 131 LY-RTLAESMGIEVKLYNLLPDKSW-------EIDLKQLESLIDEKTAALVVNNPSNPCG 182
Query: 215 ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVY 274
+ R LEE+L A R+ + +++DEIY FS + F +A + S V I+
Sbjct: 183 SVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPVASL--------SSNVPILS 234
Query: 275 --SLSKDLGLPGFRVGTIYSYN---------DKVVTTARR-MSSFTLISSQTQYLLASML 322
L+K +PG+R+G I ++ D +V ++R + T++ Q L S+L
Sbjct: 235 CGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIV----QGALPSIL 290
Query: 323 SNK-----KFTENYIKTNRERLQKRYQMIIEGLRSA--GIECLKGNAGLFCWMNLSPLLE 375
T + +++N M+ G +A G++ + + ++ + + +
Sbjct: 291 LRTPQEYFDGTLSVLESN--------AMLCYGALAAVPGLQPVMPSGAMYMMVGIE-MEH 341
Query: 376 EQTREGELALWDSMLHEVKLNISPGSSCHCSE-PGWFRVCFANMSEQTLEVALKRIHNF 433
+ ++ + ++ E + PGS C E PG+FRV E A RI F
Sbjct: 342 FPEFKNDVEFTERLIAEQSVFCLPGS---CFEYPGFFRVVLTVPVVMMEE-ACSRIQEF 396
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401 |
| >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 9e-20
Identities = 85/345 (24%), Positives = 152/345 (44%), Gaps = 37/345 (10%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
GL R+A+A++ + G RIVVTAGA+AA L L + GD +L+P P YP
Sbjct: 68 GLAPLREAIAAWYARRFG--LDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYP 125
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA 215
+R + V + + FQ+T +EAA+ E R RGVL+ +PSNP G
Sbjct: 126 C-NRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGE------RTRGVLLASPSNPTGT 178
Query: 216 TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275
+I L +++ + + DEIY G ++ ++ +++ + V + S
Sbjct: 179 SIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSL---------GDDVITINS 229
Query: 276 LSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKK----FTENY 331
SK + G+R+G + + +V T ++ +Q ++ AS L+ F +
Sbjct: 230 FSKYFNMTGWRLGWLVV-PEALVGTFEKL-------AQNLFICASALAQHAALACFEPDT 281
Query: 332 IKT---NRERLQKRYQMIIEGLRSAGIEC-LKGNAGLFCWMNLSPLLEEQTREGELALWD 387
+ R ++R I+ L S G + + + + + + + AL
Sbjct: 282 LAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFYVYADCRG-VAHPAAGDSAALTQ 340
Query: 388 SMLHEVKLNISPGSSCHCSEPGWF-RVCFANMSEQTLEVALKRIH 431
+MLH+ + + PG P + R+ +A + LE A+ R+
Sbjct: 341 AMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSR-LEEAVARLG 384
|
Length = 388 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 1e-19
Identities = 86/344 (25%), Positives = 139/344 (40%), Gaps = 33/344 (9%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
GL R+A A+ ++ G A ++ +T+G A LA GD +++P P+Y
Sbjct: 68 GLPELREAYAAHYSRLYG--AAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWY- 124
Query: 156 GFDRDLRWRT-GIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLG 214
F+ + GI+ V + CD P A EA R R + + P+NP G
Sbjct: 125 -FNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITP------RTRAIALVTPNNPTG 177
Query: 215 ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEI---LEARQYKDSERVH 271
+L EL D A R I L+ DE Y +F S L A D VH
Sbjct: 178 VVYPPELLHELYDLARRHGIALILDETY-------RDFDSGGGAPHDLFADPDWDDTLVH 230
Query: 272 IVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQ-TQYLLASMLSNKKFTEN 330
+ YS SK L G RVG + + ++ + M + + + + Q +A L N +
Sbjct: 231 L-YSFSKSYALTGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPN---LAD 286
Query: 331 YIKTNRERLQKRYQMIIEGL-RSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSM 389
+ NR + +R R G E L + F ++ P + +RE + +
Sbjct: 287 WRAGNRAEIARRRDAFRAVFARLPGWE-LLASGAYFAYVR-HPFPDRPSRE----VARRL 340
Query: 390 LHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNF 433
E + PG+ + G+ R+ FAN + ++R+ F
Sbjct: 341 AKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384
|
Length = 386 |
| >gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 7e-19
Identities = 74/277 (26%), Positives = 131/277 (47%), Gaps = 18/277 (6%)
Query: 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGAT-AANELLTFILADPGDALLV 149
+ D GL R+ +A F+E+ R G D I +T GA+ ++L ++ D +LV
Sbjct: 103 YSDSRGLPGVRKEVAEFIER-RDGYPS-DPELIFLTDGASKGVMQILNAVIRGEKDGVLV 160
Query: 150 PTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNP 209
P P YP + + G +VP + + S N+ + L + +A SK + VR ++I NP
Sbjct: 161 PVPQYPLYSATISLLGGT-LVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINP 219
Query: 210 SNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE-FVSIAEILEARQYKDSE 268
NP G + + L E+L F ++ + L+ DE+Y + + F+S ++L S+
Sbjct: 220 GNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISK 279
Query: 269 RVHIV--YSLSKD-LGLPGFRVGTIYSYN--DKVVTTARRMSSFTLISSQTQYLLASMLS 323
V +V +++SK G G R G N K V +++S L + + + ++
Sbjct: 280 EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVASIALSPNVSGQIFMGLMV 339
Query: 324 N--KKFTENYIKTNRER------LQKRYQMIIEGLRS 352
N K +Y + RE L++R +M+ +G S
Sbjct: 340 NPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNS 376
|
Length = 407 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 5e-18
Identities = 87/399 (21%), Positives = 183/399 (45%), Gaps = 37/399 (9%)
Query: 41 YEESTNPSGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSF 100
+E ++ VI +G+ E FD + E A +G + NA G+
Sbjct: 26 FERASKMENVISLGIGEP--DFDTPKNIKEAAKRA--LDEGWTHYTPNA------GIPEL 75
Query: 101 RQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD 160
R+A+A + ++ G D++ ++VTAGA A L L + GD +++P P + + D
Sbjct: 76 REAIAEYYKKFYG--VDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVED 133
Query: 161 LRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRS 220
+ K + I N FQ P L E +K R R ++I P+NP GAT+ +
Sbjct: 134 AKI-AEAKPIRIPLREENEFQPDPDEL----LELITK--RTRMIVINYPNNPTGATLDKE 186
Query: 221 VLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDL 280
V + + D A NI+++SDE Y + ++ + + + + S SK
Sbjct: 187 VAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYA-------PDNTILANSFSKTF 239
Query: 281 GLPGFRVGTIYSYNDKVVTTARRMSSFTL--ISSQTQYLLASMLSNKKFTENYIKTNRER 338
+ G+R+G + + V+ ++ ++ + ++S Q L +K+ + ++ R+
Sbjct: 240 AMTGWRLGFVIAPEQ-VIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKA-VEEMRKE 297
Query: 339 LQKRYQMIIEGLRS-AGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNI 397
+R +++++ L+ I+ + + + N+ + E + A W +L + ++ +
Sbjct: 298 YNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDET--GMSSE-DFAEW--LLEKARVVV 352
Query: 398 SPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436
PG++ + G+ R+ +A E+ +E A++R+ +++
Sbjct: 353 IPGTAFGKAGEGYIRISYATSKEKLIE-AMERMEKALEE 390
|
Length = 391 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 5e-18
Identities = 72/317 (22%), Positives = 132/317 (41%), Gaps = 47/317 (14%)
Query: 139 ILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNN-FQITPQALEAAYKEAESK 197
L PGD +++ TP YP F G K++ + ++I ALE A+ + K
Sbjct: 102 ALTKPGDGVVIQTPVYPPFYN-AIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVK 160
Query: 198 DMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAE 257
++ NP NP G + L ++ + R + ++SDEI++ + + A
Sbjct: 161 LF-----ILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFAS 215
Query: 258 ILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTA-RRM--------SSFT 308
+ + ++ D + S SK L G + I N ++ +R+ S+
Sbjct: 216 L--SERFAD--NSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALG 271
Query: 309 LISSQTQY-----LLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA--GIECLKGN 361
+I+++ Y L +L Y+K NR + + L G++ +
Sbjct: 272 IIATEAAYNQGEPWLDELL-------EYLKDNR-------DYVADFLNKHLPGVKVTEPQ 317
Query: 362 AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQ 421
W++ L + + ELA + +L E K+ +SPGS+ G+ R+ FA
Sbjct: 318 GTYLAWLDCRELGLD---DSELAEF--LLEEAKVALSPGSTFGEEGSGFVRLNFA-CPRA 371
Query: 422 TLEVALKRIHNFMQKRE 438
LE AL+R+ ++KR
Sbjct: 372 ILEEALERLKRALKKRR 388
|
Length = 388 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 7e-18
Identities = 56/258 (21%), Positives = 106/258 (41%), Gaps = 32/258 (12%)
Query: 116 AKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD 175
D ++V G+ ELL +PGD +L+P P + ++ + G ++V +
Sbjct: 71 GVVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQ-LAGAEVVKV--- 126
Query: 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIH 235
F++ A+ AA ++ + + V + NP+NP G + R L LL+ A +
Sbjct: 127 PLKEFRLDLDAILAAIRD------KTKLVFLCNPNNPTGTLLPREELRALLE-ALPEGGL 179
Query: 236 LVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYND 295
+V DE Y EF + + + + + ++ + SK GL G RVG + +
Sbjct: 180 VVIDEAY-------IEFSPESSLELLKYPPN---LIVLRTFSKAFGLAGLRVGYAIANPE 229
Query: 296 KVVTTARRMSSFTLISSQTQYLLASMLSNKKFTE---NYIKTNRERLQKRYQMIIEGLRS 352
+ + F +SS + L + + E I+ RERL L++
Sbjct: 230 LIAALNKVRPPFN-VSSPALAAAIAALRDADYLEESVERIREERERL-------YAALKA 281
Query: 353 AGIECLKGNAGLFCWMNL 370
G+ + + F + +
Sbjct: 282 LGLFGVFPSQANFVLVRV 299
|
Length = 356 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 3e-17
Identities = 59/256 (23%), Positives = 113/256 (44%), Gaps = 23/256 (8%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
G + + + + F N I+ T GA L + DPGD +++ PY+
Sbjct: 67 GDVELIEEIIKYYSKNYD--LSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFT 124
Query: 156 GFDRDLRWRTGIKIVPIHCDS--SNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPL 213
+ + G PI ++ + FQI + LEA + + +++ +P+NP
Sbjct: 125 PYKDQIEMVGGK---PIILETYEEDGFQINVKKLEALITS------KTKAIILNSPNNPT 175
Query: 214 GATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIV 273
GA + LEE+ A ++ ++SDE+Y G +F +FV +A L ER
Sbjct: 176 GAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSF-YEDFVPMA-TLAGMP----ERTITF 229
Query: 274 YSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS---SFTLISSQTQYLLASMLSNKKFTEN 330
S SKD + G+R+G + + D ++ TA+ ++ F+ + + + ++
Sbjct: 230 GSFSKDFAMTGWRIGYVIA-PDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPL 288
Query: 331 YIKTNRERLQKRYQMI 346
+ ++RL+ Y+ I
Sbjct: 289 IKEEFQKRLEYAYKRI 304
|
Length = 384 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 3e-17
Identities = 80/354 (22%), Positives = 152/354 (42%), Gaps = 41/354 (11%)
Query: 87 ENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA--DPG 144
EN +Q G+ +A+ ++Q G + IVVTAG+ A + ILA DPG
Sbjct: 57 ENHKYQAVQGIPPLLEAITQKLQQDNGIELN-NEQAIVVTAGSNMA--FMNAILAITDPG 113
Query: 145 DALLVPTPYYPGFDRDLRWRTGIKI---VPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201
D +++ TPYY F+ ++ I + PI + +N+Q+ P+A+E A +
Sbjct: 114 DEIILNTPYY--FNHEM----AITMAGCQPILVPTDDNYQLQPEAIEQAITP------KT 161
Query: 202 RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEA 261
R ++ +P+NP G ++L + I+ +SDE Y + + S I +
Sbjct: 162 RAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGS 221
Query: 262 RQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTA-RRMSSFTLISSQ--TQYLL 318
+ S +YSLSK G +R+G Y + A +++ LI +QY
Sbjct: 222 GNHTIS-----LYSLSKAYGFASWRIG--YMVIPIHLLEAIKKIQDTILICPPVVSQYAA 274
Query: 319 ASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIEC--LKGNAGLFCWMNLSPLLEE 376
L K +Y + + + + Q++++ L C N +C L+
Sbjct: 275 LGALQVGK---SYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYC------FLKV 325
Query: 377 QTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRI 430
T + L ++ E ++ + PG++ + R+ + + + T + ++R+
Sbjct: 326 NTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERL 379
|
Length = 389 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 8e-17
Identities = 77/286 (26%), Positives = 133/286 (46%), Gaps = 25/286 (8%)
Query: 87 ENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA-GATA--ANELLTFILADP 143
EN + Y G+ FR+A+A + ++ G + D V++ G+ A+ L F+ +P
Sbjct: 61 ENHQYPSYEGMLEFRKAVADWYKRRFG--VELDPETEVISLIGSKEGIAHIPLAFV--NP 116
Query: 144 GDALLVPTPYYPGFDRDLRWRTGI-KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVR 202
GD +LVP P YP + + G +P+ + N F P L+A ++ K +
Sbjct: 117 GDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEE--NGF--LPD-LDAIPEDVAKK---AK 168
Query: 203 GVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEAR 262
+ I P+NP GA EE++DFA + +I + D YS A+ + S LE
Sbjct: 169 LMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSF---LEVP 225
Query: 263 QYKDSERVHI-VYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASM 321
KD V I +SLSK + G+R+G N ++ ++ S + S Q + +
Sbjct: 226 GAKD---VGIEFHSLSKTYNMTGWRIGFAVG-NADLIAGLGKVKS-NVDSGVFQAIQEAG 280
Query: 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCW 367
++ + ++ R+ Q+R +++EGLR G+E A + W
Sbjct: 281 IAALNGPQEVVEELRKIYQERRDILVEGLRKLGLEVEPPKATFYVW 326
|
Length = 385 |
| >gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 1e-16
Identities = 80/343 (23%), Positives = 150/343 (43%), Gaps = 42/343 (12%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGD---ALLVPTP 152
G K+ R+A++ + E+ G + D +++ +AG+ A + DP + ++ TP
Sbjct: 37 GTKALREAISGWFERRFGVKLDPD-AQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTP 95
Query: 153 YYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP 212
YP ++R + G + + F + + +E + E + V I P NP
Sbjct: 96 GYPVYERGALFAGGEP-TAVKLKKEDGFLLRLEKVEKSILE------ETKIVWINYPHNP 148
Query: 213 LGATIQRSVLEELLDFATRKNIHLVSDE----IYSGSAFSSSEFVSIAEILEARQYKDSE 268
GAT RS L+E + I L SDE IY G S+ V I E
Sbjct: 149 TGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGI------------E 196
Query: 269 RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQT--QYLLASMLSNKK 326
V +SLSK G+ G+R G + + ++K+++ R++ + ++S Q + S+
Sbjct: 197 NVLAFHSLSKRSGMTGYRSGFV-AGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSD-- 253
Query: 327 FTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALW 386
+N++ R+ +++ + IE G+E L +A + W+ + ++ + +
Sbjct: 254 --DNHVLERRKIFKRKRDLFIEFFNKVGLEYLYPDATFYLWVKVPSGIDAKD-------Y 304
Query: 387 DSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKR 429
L E + ++PG + E G+ RV E+ E AL+
Sbjct: 305 ALRLLENGIVVAPGENFGSGEEGYVRVALVPTLEECEE-ALRL 346
|
The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350 |
| >gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 6e-16
Identities = 76/317 (23%), Positives = 138/317 (43%), Gaps = 50/317 (15%)
Query: 140 LADPGDALLVPTPYYPGFDRDLRWRTGIKIV---PIH--CDSSNNFQITPQALEAAYKEA 194
L D GD +L+P+P YP W + + +H CD + + P +
Sbjct: 228 LLDDGDEVLIPSPDYP------LWTACVNLAGGTAVHYRCDEQSEWY--PD-----IDDI 274
Query: 195 ESK-DMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253
SK R + ++I NP+NP GA R VL++++D A + + SDEIY E
Sbjct: 275 RSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHT 334
Query: 254 SIAEILEARQYKDSERVHIV-YS-LSKDLGLPGFRVG-TIYSYNDKVVT---------TA 301
SIA + + + V +S LSK + G+R+G I S N ++
Sbjct: 335 SIASL--------APDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLAN 386
Query: 302 RRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS-AGIECLKG 360
R+ S + Q ++ + L + ++Y+ R+ ++ +++ L + GI +K
Sbjct: 387 MRLCS----NVPAQSIVQTALGGHQSVKDYL-VPGGRVYEQRELVYNALNAIPGISAVKP 441
Query: 361 NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCF-ANMS 419
A + + + + + AL +LH+ K+ I G+ + +P FRV + +
Sbjct: 442 KAAFYIFPKIDVKKFNIHDDEQFAL--DLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRL- 498
Query: 420 EQTLEVALKRIHNFMQK 436
+ LE A+ R+ +F
Sbjct: 499 -EDLEDAMDRLADFFSY 514
|
Length = 517 |
| >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 84/331 (25%), Positives = 144/331 (43%), Gaps = 43/331 (12%)
Query: 94 YHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFI-LA--DPGDALLVP 150
+ G SFRQA+ + + R +L+ + E LT + LA +PGD +LVP
Sbjct: 72 FEGTASFRQAITDWYHR----RYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVP 127
Query: 151 TPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQAL-EAAYKEAESKDMRVRGVLITN- 208
+P YP R G +I PI N++ I ++ E ++A+ +L N
Sbjct: 128 SPAYPAHFRG-PLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAK--------ILYFNY 178
Query: 209 PSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSE 268
PSNP AT R EE++ FA + I LV D Y+ AF + S+ EI A+
Sbjct: 179 PSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDI--GV 236
Query: 269 RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS------FTLISSQTQYLLASML 322
H +LSK + G+RVG + N ++ R + + F+ + + L
Sbjct: 237 EFH---TLSKTYNMAGWRVGFVVG-NRHIIQGLRTLKTNLDYGIFSALQKAAETALQ--- 289
Query: 323 SNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGE 382
++Y++ +ER + R +I+GL G A ++ W+ +
Sbjct: 290 ----LPDSYLQQVQERYRTRRDFLIQGLGELGWNIPPTKATMYLWVPCPV----GMGSTD 341
Query: 383 LALWDSMLHEVKLNISPGSSCHCSEPGWFRV 413
AL ++L + + ++PG++ G+ R+
Sbjct: 342 FAL--NVLQKTGVVVTPGNAFGEGGEGYVRI 370
|
Length = 394 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 4e-15
Identities = 67/289 (23%), Positives = 119/289 (41%), Gaps = 49/289 (16%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
G++ F +A+ + D +++ G+ L + A+PGD +LVP P Y
Sbjct: 70 GIQEFHEAVTEYYNNTHNVILNAD-KEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYT 128
Query: 156 GFDRDLRWRTGIKIV-----PIHCDSSNNFQITPQAL--EAAYKEAESKDMRVRGVLITN 208
++ TGI++ + N+F + + E A K ++I N
Sbjct: 129 AYE------TGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAK---------MMILN 173
Query: 209 -PSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDS 267
P NP+ A +E++ FA + NI +V D Y+ F ++ +S + A++
Sbjct: 174 FPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKE---- 229
Query: 268 ERVHI-VYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQT--------QYLL 318
V + + SLSK L G R+G + N+++V + T S T Q
Sbjct: 230 --VGVEINSLSKSYSLAGSRIGYMIG-NEEIV------RALTQFKSNTDYGVFLPIQKAA 280
Query: 319 ASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCW 367
+ L N + + NR Q+R +++G R+ G K +F W
Sbjct: 281 CAALRN---GAAFCEKNRGIYQERRDTLVDGFRTFGWNVDKPAGSMFVW 326
|
Length = 399 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 58/258 (22%), Positives = 112/258 (43%), Gaps = 38/258 (14%)
Query: 100 FRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL---ADPGDALLVPTPYYPG 156
+QA+A + D +I++ G+ +E++ ++ +PGDA+LVP P Y
Sbjct: 59 LKQALADY--------YGVDPEQILLGNGS---DEIIELLIRAFLEPGDAVLVPPPTYSM 107
Query: 157 FDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGAT 216
++ + G ++V + Q+ + + A + + + V + +P+NP G
Sbjct: 108 YEISAKIH-GAEVV--KVPLDEDGQLDLEDILVAIDD------KPKLVFLCSPNNPTGNL 158
Query: 217 IQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSL 276
+ RS +E +L+ T ++ +V DE Y EF L + + ++ +L
Sbjct: 159 LSRSDIEAVLE-RTPEDALVVVDEAY-------GEFSGEPSTLP--LLAEYPNLIVLRTL 208
Query: 277 SKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTE---NYIK 333
SK GL G R+G + N +++ ++ + +S Q + L + F E I
Sbjct: 209 SKAFGLAGLRIGYAIA-NAEIIDALNKVRAPFNLSRLAQAAAIAALRDDDFIEKTVEEIN 267
Query: 334 TNRERLQKRYQMIIEGLR 351
RERL + + GL
Sbjct: 268 AERERLYDGLKK-LPGLE 284
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 2e-14
Identities = 85/366 (23%), Positives = 167/366 (45%), Gaps = 51/366 (13%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
GL R+A+A ++ R K L+ + +T+G T A ++ +LA PG +L+P P +P
Sbjct: 74 GLPQARRAIAEYLS--RDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFP 131
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA 215
++ +R +++ + +++ A+EA D ++I NP NP G
Sbjct: 132 IYELCAAFR-HLEVRYVDLLPEKGWEVDLDAVEAL------ADQNTVALVIINPGNPCGN 184
Query: 216 TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV------SIAEILEARQYKDSER 269
L+++ + A + I +++DE+Y AF S+ FV SI +L
Sbjct: 185 VYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVL---------- 234
Query: 270 VHIVYSLSKDLGLPGFRVGTIYS-------YNDKVVTTARRMSSFTLISSQTQYLLASML 322
+ SLSK +PG+R+G + + K+V ++ F ++ ++ A++
Sbjct: 235 --TLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKY--FDILGGPATFIQAAVP 290
Query: 323 SNKKFT-ENYIKTNRERLQKRYQMIIEGLRSAGIECL------KGNAGLFCWMNLSPLLE 375
+ + T E++ K L++ + + ++ I C+ +G+ + +NLS LLE
Sbjct: 291 TILEQTDESFFKKTINILKQSSDICCDRIKE--IPCITCPHKPEGSMAVMVKLNLS-LLE 347
Query: 376 EQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435
+ + + + + E + I PG++ W R+ FA +LE AL RI +F
Sbjct: 348 DISDDIDFCF--KLAREESVIILPGTAVGLKN--WLRITFA-ADPSSLEEALGRIKSFYL 402
Query: 436 KRERRR 441
+ + +
Sbjct: 403 RHSKTQ 408
|
Length = 409 |
| >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 2e-14
Identities = 72/298 (24%), Positives = 141/298 (47%), Gaps = 19/298 (6%)
Query: 83 PGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGAT-AANELLTFILA 141
PG R + G+K R A+A+ +E G A D N I +T GA+ A + ++ ++
Sbjct: 157 PG-RATGAYSHSQGIKGLRDAIAAGIEARDGFPA--DPNDIFLTDGASPAVHMMMQLLIR 213
Query: 142 DPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201
D +L P P YP + + G +VP + D + + + L+ ++A SK + V
Sbjct: 214 SEKDGILCPIPQYPLYSASIALHGG-TLVPYYLDEATGWGLEISELKKQLEDARSKGITV 272
Query: 202 RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAF-SSSEFVSIAEILE 260
R +++ NP NP G + ++++F ++ + L++DE+Y + + +F S ++
Sbjct: 273 RALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVAR 332
Query: 261 ARQYKDSERVHIVY-SLSKDL-GLPGFRVG--TIYSYNDKVVTTARRMSSFTLISSQTQY 316
+ Y + + + + S+SK G G R G + + V +++S L S+ +
Sbjct: 333 SMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQ 392
Query: 317 LLASMLSN--KKFTENYIKTNRER------LQKRYQMIIEGLRS-AGIECLKGNAGLF 365
+LAS++ + K E+Y E+ L +R + + + L S G+ C K ++
Sbjct: 393 ILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMY 450
|
Length = 534 |
| >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 88/389 (22%), Positives = 157/389 (40%), Gaps = 96/389 (24%)
Query: 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFI---LADPGDALLV 149
D GL S R+A+ + +Q G D++ I + G + EL+ L + GD +LV
Sbjct: 70 DSKGLFSARKAIMQYYQQ--KGIPDVDVDDIYIGNGVS---ELIVMAMQALLNNGDEVLV 124
Query: 150 PTPYYPGFDRDLRWRTGIKIV---PIH--CDSSNNFQ---------ITPQALEAAYKEAE 195
P P YP W + + P+H CD + ITP
Sbjct: 125 PAPDYP------LWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITP----------- 167
Query: 196 SKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSI 255
R + ++I NP+NP GA + +LEE+++ A + N+ + +DEIY + + +SI
Sbjct: 168 ----RTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISI 223
Query: 256 AEILEARQYKDSERVHIVY--SLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQ 313
A + + + V LSK + GFRVG + V++ ++ +
Sbjct: 224 ASL--------APDLLCVTFNGLSKAYRVAGFRVGWM------VLSGPKKHAK------- 262
Query: 314 TQYLLA-SMLSNKKFTENY-----IKT---------------NRERLQKR--YQMIIEGL 350
Y+ ML++ + N I+T R Q+ ++++
Sbjct: 263 -GYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNA-- 319
Query: 351 RSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGW 410
G+ C+K L+ + L P + + + L +L + K+ + G+ + EP
Sbjct: 320 -IPGVSCVKPKGALYAFPKLDPKVYPIHDDEQFVL--DLLLQEKVLLVQGTGFNWPEPDH 376
Query: 411 FRVCFANMSEQTLEVALKRIHNFMQKRER 439
FR+ + LE A+ RI F+ +
Sbjct: 377 FRIVTLPRVDD-LEEAIGRIGRFLSGYRQ 404
|
Length = 404 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 3e-14
Identities = 77/362 (21%), Positives = 145/362 (40%), Gaps = 69/362 (19%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYY- 154
G F++A+AS + + I+ T GAT AN L+ + L +PGD ++ P Y
Sbjct: 63 GSPEFKEAVASLYQNV-------KPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQ 115
Query: 155 -----P---GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206
P G + D W+ N + L + + + I
Sbjct: 116 QLYDIPESLGAEVDY-WQL---------KEENGWLPDLDELRRLVRP------NTKLICI 159
Query: 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKD 266
N +NP GA + R+ LEE+++ A + +++SDE+Y SIA++ Y
Sbjct: 160 NNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLD-EDGSTPSIADL-----Y-- 211
Query: 267 SERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKK 326
E+ S+SK LPG RVG I + N++V+ R+ +T+I A + +
Sbjct: 212 -EKGISTNSMSKTYSLPGIRVGWIAA-NEEVIDILRKYRDYTMIC-------AGVFDDML 262
Query: 327 FTENYIKTNRERLQKRYQMIIEGLRS---------AGIECLKGNAGLFCWMNLSPLLEEQ 377
+ +R+ + +R + I+ + + +K A + ++
Sbjct: 263 AS--LALEHRDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAV------STSFVKLD 314
Query: 378 TREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437
+L E + + PG+ G R+ + +TL+ LK++ F+++
Sbjct: 315 VDMPSEDFCLKLLKETGVLLVPGN--RFDLEGHVRIGYCC-DTETLKKGLKKLSEFLREF 371
Query: 438 ER 439
+
Sbjct: 372 DS 373
|
Length = 373 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 76/354 (21%), Positives = 142/354 (40%), Gaps = 56/354 (15%)
Query: 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGF 157
S A+ +++ Q G + D IV G + L PG+ ++V TP YP F
Sbjct: 63 DSLYAAVINWLAQRHGWQ--IDPEWIVFLPGVVPSLFAAVRALTAPGEGVIVQTPVYPPF 120
Query: 158 DRDLRWRTGIKIV--PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA 215
++ G ++V P+ D ++ + LE A + R +L+ +P NP+G
Sbjct: 121 LSAVK-SNGRELVLNPLKLDP-GRYRFDLEDLEDA------ITEKARLLLLCSPHNPVGR 172
Query: 216 TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275
R L L + R N+ +VSDEI++ + ++ + +A + + +ER + S
Sbjct: 173 VWTREELTRLAELCLRHNVVVVSDEIHADLVYPPNKHIPLASLSP----EIAERTVTLLS 228
Query: 276 LSKDLGLPGFRVGTIYSYNDK----VVTTARRM-----SSFTLISSQTQY---------L 317
K + G + N + A+R+ + F ++ + Y L
Sbjct: 229 PGKTFNIAGLNISFAIIPNPELRRAFQEAAQRVHIQHGNLFGYVAFEAAYREGEPWLDAL 288
Query: 318 LASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQ 377
LA Y++ NR+ +++ + +R E A W++ L +
Sbjct: 289 LA-----------YLRGNRDLVEEFIAKRLPQIRVRPPE-----ATYLAWLDCRALGLDD 332
Query: 378 TREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIH 431
+L + + + L ++PG S G+ R+ F TLE AL+R+
Sbjct: 333 A---DLRAF--FIEQAGLGLNPGISFGDGGSGFMRLNFG-CPRSTLEQALERLR 380
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 5e-14
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 22/181 (12%)
Query: 118 FDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP---GFDRDLRWRTGIKIVPIHC 174
D + ++TAGAT + L+ PGD + P P Y F R+ + VPI+
Sbjct: 81 LDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFAS--RFGAEVIEVPIY- 137
Query: 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNI 234
N+++TP+ ++ D R + + +P NPLG++ ++E + A +
Sbjct: 138 SEECNYKLTPELVKENM------DENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDA 191
Query: 235 HLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYN 294
L+ D Y F+ + A +Y E YS SK G+ G R+G + +
Sbjct: 192 FLLHDCTYRD--FAREHTL-------AAEY-APEHTVTSYSFSKIFGMAGLRIGAVVATP 241
Query: 295 D 295
D
Sbjct: 242 D 242
|
Length = 380 |
| >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-14
Identities = 88/371 (23%), Positives = 138/371 (37%), Gaps = 67/371 (18%)
Query: 83 PGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR-IVVTAGATAANELLTFILA 141
P + + F+ G ++A A F ++ G D + + G A L L
Sbjct: 61 PANHKYSPFR---GYPFLKEAAADFYKREYG--VTLDPETEVAILFGGKAGLVELPQCLM 115
Query: 142 DPGDALLVPTPYYPGFDRDLRWR----TGIKIVPIHCDSSNNF-----QITPQALEAAYK 192
+PGD +LVP P YP + + + + NNF +I + E A
Sbjct: 116 NPGDTILVPDPGYPDY-----LSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKA-- 168
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252
K M + P+NP GA ++ EE + FA + NI +V D Y F +
Sbjct: 169 ----KLM-----YLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKP 219
Query: 253 VSIAEILEARQYKDSERVHI-VYSLSKDLGLPGFRVG----------TIYSYNDKVVTTA 301
VS L+ KD V I +Y+LSK + G+RV I D +
Sbjct: 220 VS---FLQTPGAKD---VGIELYTLSKTFNMAGWRVAFAVGNESVIEAINLLQDHL---- 269
Query: 302 RRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN 361
F + Q L + ++ + R + R I R G E
Sbjct: 270 -----FVSLFGAIQDAAIEALLS---DQSCVAELVARYESRRNAFISACREIGWEVDAPK 321
Query: 362 AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQ 421
F WM P+ + T E + A D +L + + ++PG+ G+ RV E+
Sbjct: 322 GSFFAWM---PVPKGYTSE-QFA--DLLLEKAHVAVAPGNGFGEHGEGYVRVGLL-TDEE 374
Query: 422 TLEVALKRIHN 432
L A++RI
Sbjct: 375 RLREAVERIGK 385
|
Length = 389 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 9e-14
Identities = 66/224 (29%), Positives = 95/224 (42%), Gaps = 22/224 (9%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
G + R A+A ++ RGG D + ++ T G++ A L+ L PGD ++V P Y
Sbjct: 52 GGEGLRAAIA---DRWRGG----DAHVVMTTHGSSEAIYLVLTALLRPGDEVVVVDPAYH 104
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA 215
G ++ P + F+ AL A R R V++ P NP GA
Sbjct: 105 SLSHLAVAT-GCEVRPWPLLAVRGFRPDLDALRALLTP------RTRAVVVNFPHNPTGA 157
Query: 216 TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275
++ L+ELL+ A R L+ D +AF ++ V A L +RV +
Sbjct: 158 SVTPRELDELLERAARSGAVLLWD-----NAF--ADLVHDAPPL-PDPSALYDRVISFGT 209
Query: 276 LSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLA 319
LSK GLPG RVG D + R TL S LLA
Sbjct: 210 LSKAFGLPGLRVGWCVGPADLLAELVRLRDYTTLSLSPLVELLA 253
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 85/322 (26%), Positives = 141/322 (43%), Gaps = 45/322 (13%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNR-IVVTAGATAANELLTFILADPGDALLVPTPYY 154
G+ R A+ ++ + R D +V T G+ L + +PGD +VP P Y
Sbjct: 72 GIYKLRLAICNWYK--RKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAY 129
Query: 155 P----GFDRDLRWRTGIKIVPIHCDSSNNFQITPQA----LEAAYKEAESKDMRVRGVLI 206
P F G + + + + +F++ LE A +E+ K + V++
Sbjct: 130 PIHSQAF-----ILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPK---PKYVVV 181
Query: 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKD 266
P NP AT+++S E L+ A ++ +++SD Y+ F + SI E+ A KD
Sbjct: 182 NFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGA---KD 238
Query: 267 SERVHI-VYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS------FTLISSQTQYLLA 319
V + Y+LSK + G+RVG + N K+V +++ S FT I L
Sbjct: 239 ---VAVESYTLSKSYNMAGWRVGFVVG-NKKLVGALKKIKSWLDYGMFTPIQVAATIALD 294
Query: 320 SMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTR 379
++ ++ RE +KR ++IE +AG E K A +F W + E R
Sbjct: 295 G-------DQSCVEEIRETYRKRRDVLIESFANAGWELQKPRASMFVWAKIP----EPAR 343
Query: 380 E-GELALWDSMLHEVKLNISPG 400
G L +L E K+ +SPG
Sbjct: 344 HLGSLEFSKQLLTEAKVAVSPG 365
|
Length = 403 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 72/319 (22%), Positives = 141/319 (44%), Gaps = 46/319 (14%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNR---IVVTAGATAANELLTFILADPGDALLVPTP 152
G+ R+A++ + + R D++ +VT G+ L D GD +LVP P
Sbjct: 68 GIPRLRRAISRWYQD----RYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNP 123
Query: 153 YYP---------GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESK-DMRVR 202
YP G ++ VP+ + + F LE A +E+ K M +
Sbjct: 124 SYPIHIYGAVIAGAQ--------VRSVPL-VEGVDFFN----ELERAIRESYPKPKMMIL 170
Query: 203 GVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEAR 262
G PSNP ++ E+++ A R ++ +V D Y+ + + SI ++ A+
Sbjct: 171 GF----PSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAK 226
Query: 263 QYKDSERVHI-VYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASM 321
V + ++LSK + G+R+G + N ++V+ R+ S+ + T +A++
Sbjct: 227 D------VAVEFFTLSKSYNMAGWRIGFMVG-NPELVSALARIKSYHDYGTFTPLQVAAI 279
Query: 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREG 381
+ + + ++ E+ ++R ++++GL AG A ++ W + + E G
Sbjct: 280 AALEG-DQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVW---AKIPEPYAAMG 335
Query: 382 ELALWDSMLHEVKLNISPG 400
L +L+E K+ +SPG
Sbjct: 336 SLEFAKKLLNEAKVCVSPG 354
|
Length = 395 |
| >gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 69/293 (23%), Positives = 129/293 (44%), Gaps = 39/293 (13%)
Query: 86 RENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGD 145
EN + D +G++ F++A A +ME++ G + + ++ + G+ A +L +PGD
Sbjct: 73 PENRGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGD 131
Query: 146 ALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAES--KDMRVRG 203
L+ P YP ++ G ++ + NNF + +S KD++ +
Sbjct: 132 VTLMTVPGYPVTGTHTKYYGG-EVYNLPLLEENNF----------LPDLDSIPKDIKEKA 180
Query: 204 -VLITN-PSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS--EFVSIAEIL 259
+L N P+NP GA + EE++DFA NI +V D Y+ F F+S+
Sbjct: 181 KLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSV---- 236
Query: 260 EARQYKDSERVHI-VYSLSKDLGLPGFRVGTIYSYNDKVV----TTARRMSSFTLISSQT 314
++ V + ++SLSK + G+R+ + N+ +V T S I+ Q
Sbjct: 237 -----PGAKEVGVEIHSLSKAYNMTGWRLAFVVG-NELIVKAFATVKDNNDSGQFIAIQK 290
Query: 315 QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCW 367
+ A L + + TE RE+ +R +++ L G + + +
Sbjct: 291 AGIYA--LDHPEITEK----IREKYSRRLDKLVKILNEVGFKAEMPGGTFYLY 337
|
Length = 410 |
| >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 6e-13
Identities = 86/343 (25%), Positives = 150/343 (43%), Gaps = 34/343 (9%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLN---RIVVTAGATAANELLTFILADPGDALLVPTP 152
GL RQA+A+ + +G DL+ ++VT+GAT A L +PGD +++ P
Sbjct: 64 GLPELRQAVAAHYARFQG----LDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQP 119
Query: 153 YYPGFDRDLRWRTGI-KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSN 211
Y + +R G+ ++V + ++++ AL AA+ R + VL+ NP N
Sbjct: 120 LYDAYLPLIRRAGGVPRLVRL---EPPHWRLPRAALAAAFSP------RTKAVLLNNPLN 170
Query: 212 PLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVH 271
P G R L L +F R + + DE++ F + + + R ER
Sbjct: 171 PAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMR-----ERTV 225
Query: 272 IVYSLSKDLGLPGFRVGTIYSYND--KVVTTARRMSSFTLISSQTQYLLASMLSNKKFTE 329
+ S K L G++VG + + +V+ A + +FT Q +A L +
Sbjct: 226 KIGSAGKIFSLTGWKVGFVCAAPPLLRVLAKAHQFLTFT-TPPNLQAAVAYGLGK---PD 281
Query: 330 NYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSM 389
+Y + R L + + GLR G L F ++L+PL E ++A +
Sbjct: 282 DYFEGMRADLARSRDRLAAGLRRIGFPVLPSQGTYFLTVDLAPLGLA---EDDVAFCRRL 338
Query: 390 LHEVKLNISPGSSCHCSEP--GWFRVCFANMSEQTLEVALKRI 430
+ E + P S+ + +P R CFA + TL+ A++R+
Sbjct: 339 VEEAGVAAIPVSAFYEEDPVTSVVRFCFAK-RDATLDEAVERL 380
|
Length = 387 |
| >gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 3e-12
Identities = 86/360 (23%), Positives = 154/360 (42%), Gaps = 49/360 (13%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
GL R+A+A ++ R + + I +TAG A E++ +LA PG +L+P P YP
Sbjct: 95 GLLPARRAIAEYLS--RDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYP 152
Query: 156 GFDRDLRWRTGIKIVPI-HCD--SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP 212
++ R + + H D +++ + +EA D ++I NP+NP
Sbjct: 153 LYEA----RAVFSGLEVRHFDLLPERGWEVDLEGVEAL------ADENTVAMVIINPNNP 202
Query: 213 LGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHI 272
G+ L ++ + A + I +++DE+Y F S FV + + + V
Sbjct: 203 CGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMG------VFGEVAPVLT 256
Query: 273 VYSLSKDLGLPGFRVGTIYS-------YNDKVVTTARRMSSFTLISSQ----TQYLLASM 321
+ S+SK +PG+R+G I + KVV + R ++ IS+ Q + +
Sbjct: 257 LGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIR---NYLNISTDPATFVQGAIPQI 313
Query: 322 LSNKK--FTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWM---NLSPLLEE 376
++N K F + +E Y+ I E I C G M +LS L
Sbjct: 314 IANTKEEFFTKTLGLLKETADICYEKIKE---IKCITCPHKPEGSMFVMVKLDLSCL--- 367
Query: 377 QTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436
+ ++ + E + + PGS+ W R+ FA + +LE L+R+ +F +
Sbjct: 368 SGIKDDMDFCCKLAKEESVVVLPGSALGMKN--WLRITFA-IDPPSLEDGLERLKSFCLR 424
|
Length = 430 |
| >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 83/322 (25%), Positives = 139/322 (43%), Gaps = 52/322 (16%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLN---RIVVTAGATA--ANELLTFILADPGDALLVP 150
G+ R+A A++ + R LN ++V T G+ AN + I A PGD +L P
Sbjct: 69 GIPGLRRAQAAYYAR----RFGVKLNPDTQVVATLGSKEGFAN-MAQAITA-PGDVILCP 122
Query: 151 TPYYP----GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206
P YP GF G I + + F ALE A + + K + LI
Sbjct: 123 NPSYPIHAFGF-----IMAGGVIRSVPAEPDEEFF---PALERAVRHSIPKPI----ALI 170
Query: 207 TN-PSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYK 265
N PSNP ++++ FA + +I ++SD YS F + S+ ++ A K
Sbjct: 171 VNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGA---K 227
Query: 266 DSERVHIVY-SLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS------FTLISSQTQYLL 318
D V + + S+SK + G+R+G N++++ R+ S FT I Q
Sbjct: 228 D---VTVEFTSMSKTFSMAGWRMGFAVG-NERLIAALTRVKSYLDYGAFTPI----QVAA 279
Query: 319 ASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQT 378
+ L+ ++ I RE +KR +++E AG + A +F W +P+ E
Sbjct: 280 TAALNGP---QDCIAEMRELYKKRRDVLVESFGRAGWDIPPPAASMFAW---APIPEAFR 333
Query: 379 REGELALWDSMLHEVKLNISPG 400
G L ++ + + ++PG
Sbjct: 334 HLGSLEFSKLLVEKADVAVAPG 355
|
Length = 405 |
| >gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 82/354 (23%), Positives = 141/354 (39%), Gaps = 45/354 (12%)
Query: 94 YHGLKSFRQAMASFMEQIRGGRAKFDL-----NRIVVTAGATAANELLTFILADPGDALL 148
+HG FR+A A + EQ +F L ++ G+ L + +PGD L
Sbjct: 67 FHGTLDFREAAAQWYEQ------RFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFAL 120
Query: 149 VPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNF-----QITPQALEAAYKEAESKDMRVRG 203
+ P YP + G I P+ + N+F I + L A R
Sbjct: 121 LLDPGYPSHAGGVYLAGGQ-IYPMPLRAENDFLPVFADIPTEVLAQA-----------RL 168
Query: 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQ 263
++++ P NP A S +E + F + ++ LV D Y F IL+A
Sbjct: 169 MVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEP--PSILQA-- 224
Query: 264 YKDSER-VHI-VYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASM 321
D E+ V I ++LSK + GFR+G ++ + + A R + +Q + +L
Sbjct: 225 --DPEKSVSIEFFTLSKSYNMGGFRIG--FAIGNAQLIQALRQVKAVVDFNQYRGILNGA 280
Query: 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREG 381
++ + ++ + ++R I L G A ++ W L + + E
Sbjct: 281 IAALTGPQATVQQTVQIFRQRRDAFINALHQIGWPVPLPEATMYVWAKLPEPWQGNSVEF 340
Query: 382 ELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSE-QTLEVALKRIHNFM 434
L + + + SPGS S G+ R FA + + LE A++RI F+
Sbjct: 341 CTQL----VAQTGVAASPGSGFGKSGEGYVR--FALVHDPDILEEAVERIAAFL 388
|
Length = 388 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 8e-12
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 43/242 (17%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNR-IVVTAGATAANELLTFILA--DPGDALLVPTP 152
G+ + R+A+A+ ++ G ++D + I VTAGAT A L ILA PGD ++V P
Sbjct: 68 GVAALREAIAAKTARLYG--RQYDADSEITVTAGATEA--LFAAILALVRPGDEVIVFDP 123
Query: 153 ----YYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITN 208
Y P + G + V + + F++ Q AA R R +++
Sbjct: 124 SYDSYAPAIEL-----AGGRAVRVALQPPD-FRVDWQRFAAAISP------RTRLIILNT 171
Query: 209 PSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSE 268
P NP G + + L +I+++SDE+Y F + S+ E R+
Sbjct: 172 PHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRE----- 226
Query: 269 RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTA------RRMSSFTLISSQT--QYLLAS 320
R +V S K + G++VG V A R++ + + T Q LA
Sbjct: 227 RAFVVSSFGKTYHVTGWKVGY-------CVAPAALSAEFRKVHQYNTFTVNTPAQLALAD 279
Query: 321 ML 322
L
Sbjct: 280 YL 281
|
Length = 386 |
| >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 1e-11
Identities = 79/378 (20%), Positives = 152/378 (40%), Gaps = 58/378 (15%)
Query: 88 NALFQDYH---GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPG 144
+A F Y G+ R+A+A ++ + + + +T G A E++ +LA P
Sbjct: 64 SAKFNSYAPTGGILPARRAIADYLS--NDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPE 121
Query: 145 DALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSN----NFQITPQ-ALEAAYKEAES-KD 198
+L+P P +P V + + +F + P+ E E+ D
Sbjct: 122 ANILLPRPGFP-------------DVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIAD 168
Query: 199 MRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEI 258
++I NP NP G+ L ++ + A + I +++DE+Y F S FV +
Sbjct: 169 ENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMG-- 226
Query: 259 LEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYN-------DKVVTTARRM---SSF- 307
+ V + S+SK +PG+ +G + + + ++ + ++ + F
Sbjct: 227 ----LFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFP 282
Query: 308 -TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECL----KGNA 362
T I + +L +K TE++ L+ + L+ I C+ K
Sbjct: 283 PTFIQAAIPEIL------EKTTEDFFSKTINILRAALAFCYDKLKE--IPCIMCPQKAEG 334
Query: 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQT 422
F + L+ LL E E ++ + E L I PG + W R+ FA + + +
Sbjct: 335 AFFALVKLNLLLLEDI-EDDMEFCLKLAKEESLIILPGVTVGLKN--WLRITFA-VEQSS 390
Query: 423 LEVALKRIHNFMQKRERR 440
LE L R+ +F + ++
Sbjct: 391 LEDGLGRLKSFCGRHAKK 408
|
Length = 409 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 63/284 (22%), Positives = 121/284 (42%), Gaps = 26/284 (9%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLN---RIVVTAGATAANELLTFILADPGDALLVPTP 152
G+ R A+A+ ++ R R + + ++VT GAT A L +PGD +L+ P
Sbjct: 62 GIPELRAAIAA--QRRR--RYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEP 117
Query: 153 YYPGFDRDLRWRTGIKI-VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSN 211
YY + + ++ VP+ F + AL AA R R +++ +P N
Sbjct: 118 YYDSYAAVIAMAGAHRVPVPLV-PDGRGFALDLDALRAAVTP------RTRALIVNSPHN 170
Query: 212 PLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVH 271
P G + + L + + A ++ +++DE+Y F + + +A + R ER
Sbjct: 171 PTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMR-----ERTV 225
Query: 272 IVYSLSKDLGLPGFRVGTIYSYNDKV--VTTARRMSSFTLISSQTQYLLASMLSNKKFTE 329
+ S +K + G+++G + V A++ ++ + Q +A L ++ +
Sbjct: 226 TISSAAKTFNVTGWKIGWACGPAPLIAAVRAAKQYLTYV-GGAPFQPAVAHALDHE---D 281
Query: 330 NYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPL 373
++ R+ LQ + + GL AG E F + PL
Sbjct: 282 AWVAALRDSLQAKRDRLAAGLAEAGFEVHDSAGTYFLCADPRPL 325
|
Length = 387 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 75/319 (23%), Positives = 140/319 (43%), Gaps = 28/319 (8%)
Query: 123 IVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTG-IKIVPIHCDSSNNFQ 181
+ VT+G T A L +PGD +++ P+Y ++ L IK V + +F
Sbjct: 118 VTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLR---PPDFA 174
Query: 182 ITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEI 241
+ L+AA+ + R +LI P NP G R LE + ++ +DE+
Sbjct: 175 VPEDELKAAFTS------KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEV 228
Query: 242 YSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTA 301
Y AF + +S+A + Y ER + SL K L G+++G + +
Sbjct: 229 YDKLAF-EGDHISMASL--PGMY---ERTVTMNSLGKTFSLTGWKIGWAIA-PPHLTWGV 281
Query: 302 RRMSSFTLISSQT--QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK 359
R+ SF ++ T Q+ + L + E+Y + + + +++EGL+ G +
Sbjct: 282 RQAHSFLTFATATPMQWAAVAAL---RAPESYYEELKRDYSAKKDILVEGLKEVGFKVYP 338
Query: 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS-EPGWFRVCFA-N 417
+ F ++ +P E ++A + ++ EV + P S + + E G V FA
Sbjct: 339 SSGTYFVMVDHTPF----GFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC 394
Query: 418 MSEQTLEVALKRIHNFMQK 436
E+TL A++R+ +++
Sbjct: 395 KDEETLRAAVERMKTKLKR 413
|
Length = 413 |
| >gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 8e-11
Identities = 57/201 (28%), Positives = 86/201 (42%), Gaps = 49/201 (24%)
Query: 117 KFDLNRIVVTAGATAA----------NELLTFILADPGD--ALLVP--TPYY--PGFDR- 159
+FDL G TAA N LL GD AL+ P TPY P R
Sbjct: 161 EFDL---FAVEGGTAAMCYIFDSLKENGLL-----KAGDKIALMTPIFTPYLEIPELPRY 212
Query: 160 DLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQR 219
DL ++V I+ D N +Q LE + +D ++ + + NPSNP +
Sbjct: 213 DL------EVVHINADEENEWQYPDSELE------KLRDPSIKALFLVNPSNPPSVAMSD 260
Query: 220 SVLEELLDFAT--RKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLS 277
LE++ D R ++ +++D++Y F +F S+ +L +VYS S
Sbjct: 261 ESLEKIADIVNEKRPDLMIITDDVYG--TFVD-DFRSLFAVL-------PYNTILVYSFS 310
Query: 278 KDLGLPGFRVGTIYSYNDKVV 298
K G G+R+G I + D V
Sbjct: 311 KYFGATGWRLGVIALHEDNVF 331
|
Length = 527 |
| >gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1 | Back alignment and domain information |
|---|
Score = 63.2 bits (153), Expect = 9e-11
Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 16/200 (8%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
G+ R+A+A +M R K I +TAG E++ LA P +L+P P +P
Sbjct: 109 GILPARRAVADYMN--RDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFP 166
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA 215
+D + +G+++ ++I + +EA D +++ NP+NP G
Sbjct: 167 HYDARAAY-SGLEVRKFDLLPEKEWEIDLEGIEAI------ADENTVAMVVINPNNPCGN 219
Query: 216 TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275
L+++ + A + I ++SDE+Y + F + FVS+ ++ V +
Sbjct: 220 VYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMG------KFASIVPVLTLAG 273
Query: 276 LSKDLGLPGFRVGTIYSYND 295
+SK +PG+++G I + ND
Sbjct: 274 ISKGWVVPGWKIGWI-ALND 292
|
Length = 462 |
| >gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 60/221 (27%), Positives = 92/221 (41%), Gaps = 22/221 (9%)
Query: 82 APGFRENALFQDYHGLKS---------FRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
P F AL ++ HGL + RQA+A ++E+ D R V+ T
Sbjct: 42 TPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTR- 100
Query: 133 NELLTFILA--DPGDALLV--PTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALE 188
L F A +PG A LV P P+Y ++ G + ++C + N F A+
Sbjct: 101 EALFAFAQAVINPGQAPLVVMPNPFYQIYE-GAALLAGAEPYFLNCTAENGFLPDFDAVP 159
Query: 189 AAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS 248
ES R + + + +P NP GA + L++L++ A + + SDE YS F
Sbjct: 160 ------ESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFD 213
Query: 249 SSEF-VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVG 288
+ + D R + +SLSK LPG R G
Sbjct: 214 EGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSG 254
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 9e-10
Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 52/261 (19%)
Query: 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELL-TFILADPGDALLVPT 151
DY L R+ +ASF EQ+ DL +++ GAT EL+ + +L+
Sbjct: 55 DYLEL---RKRIASF-EQL-------DLENVILGNGAT---ELIFNIVKVTKPKKVLILA 100
Query: 152 PYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSN 211
P + ++R L+ +I NF LE + E D+ V + NP+N
Sbjct: 101 PTFAEYERALK-AFDAEIEYAELTEETNFAANEIVLE---EIKEEIDL----VFLCNPNN 152
Query: 212 PLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAF----SSSEFVSIAEILEARQYKDS 267
P G I + ++++LD ++NI+L+ DE AF +E +S+ LE +K+
Sbjct: 153 PTGQLISKEEMKKILDKCEKRNIYLIIDE-----AFMDFLEENETISMINYLE--NFKN- 204
Query: 268 ERVHIVYSLSKDLGLPGFRVGTIYSYNDKV------VTTARRMSSFTLISSQTQYLLASM 321
+ I+ + +K +PG R+G + N + + +++F ++ QT +
Sbjct: 205 --LIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREPWSINTFADLAGQT------L 256
Query: 322 LSNKKF---TENYIKTNRERL 339
L +K++ T +IK ++ L
Sbjct: 257 LDDKEYIKKTIQWIKEEKDFL 277
|
Length = 354 |
| >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 77/349 (22%), Positives = 124/349 (35%), Gaps = 69/349 (19%)
Query: 115 RAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP-------------GFDRDL 161
R + D I ++ GA L L P + + V P YP D D
Sbjct: 90 RGRIDPEEIFISDGAKCDVFRL-QSLFGPDNTVAVQDPVYPAYLDSNVMAGRAGVLDDDG 148
Query: 162 RWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSV 221
R+ KI + C + NNF E D+ + + +P+NP G + +
Sbjct: 149 RYS---KITYLPCTAENNFI-------PELPEEPHIDI----IYLCSPNNPTGTVLTKEQ 194
Query: 222 LEELLDFATRKNIHLVSDEIYSGSAFSSSEFV--SIAEILEARQYKDSERVHI-VYSLSK 278
L+EL+D+A ++ D Y SAF S + SI EI AR I S SK
Sbjct: 195 LKELVDYANEHGSLILFDAAY--SAFISDPSLPHSIFEIPGARF------CAIEFRSFSK 246
Query: 279 DLGLPGFRVG---------------TIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLS 323
G G R+G I + + T S +++ Y +
Sbjct: 247 TAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAGYAGEGLQP 306
Query: 324 NKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGEL 383
+ Y++ R ++ + L +AG + G + W ++
Sbjct: 307 ILEAISYYMENAR--------ILRKALEAAGFKVYGGEHAPYLW------VKTPEGISSW 352
Query: 384 ALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHN 432
+D +L+E + +PGS S G+ R E +E A +RI
Sbjct: 353 DFFDFLLYEYHVVGTPGSGFGPSGEGFVRFSAFGKRENIIE-ACERIKE 400
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 6e-09
Identities = 48/170 (28%), Positives = 68/170 (40%), Gaps = 28/170 (16%)
Query: 119 DLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSN 178
++ GA A LL +LA PG L V P Y + R R G ++V +
Sbjct: 63 PAASVLPVNGAQEAIYLLPRLLA-PGRVL-VLAPTYSEYARAWR-AAGHEVVEL-----P 114
Query: 179 NFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVS 238
+ P ALE A +++ NP+NP G I L L + LV
Sbjct: 115 DLDRLPAALEEA-----------DLLVVCNPNNPTGRLIPPETLLALAARLRARGGWLVV 163
Query: 239 DEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVG 288
DE AF +F A + A Q + ++ SL+K GL G R+G
Sbjct: 164 DE-----AF--IDFTPDASL--APQAARFPGLVVLRSLTKFFGLAGLRLG 204
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 7e-09
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 121 NRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNF 180
++ + G A + L + DPGD +LVP P + + R+ G ++ +++F
Sbjct: 83 EQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYHHG-EVREYPVSKADDF 141
Query: 181 QITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDE 240
+ T + AY + E R V +T+P NP G+ I +E L + T + +V DE
Sbjct: 142 EQTADTVLDAY-DGE------RIVYLTSPHNPTGSEIPLDEVEALAE-RTDEETLVVVDE 193
Query: 241 IYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVG 288
Y F+ S ++E R + V ++ + SK GL G R+G
Sbjct: 194 AY--GEFAERP--SAVALVEER-----DDVAVLRTFSKAYGLAGLRLG 232
|
Length = 357 |
| >gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 8e-09
Identities = 57/229 (24%), Positives = 91/229 (39%), Gaps = 64/229 (27%)
Query: 104 MASFMEQI------------RGGRAKFDLNRIVVTAGATAA----------NELLTFILA 141
M E+I + +FD + G TAA NELL
Sbjct: 130 MLPHSEKIVHQYLIQEMCGNKPPPGEFD---LFAVEGGTAAMCYIFDSLKANELL----- 181
Query: 142 DPGD--ALLVP--TPYY--PGFDRDLRWRTGIKIVPIHCDSSNN-----FQITPQALEAA 190
GD AL+ P TPY P +L R ++V I D +Q + LE
Sbjct: 182 KKGDKIALMTPIFTPYLEIP----ELP-RYDFEVVRIKADEMTEDGTHTWQYPDKELE-- 234
Query: 191 YKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFAT--RKNIHLVSDEIYSGSAFS 248
+ +D ++ + + NPSNP + +E+++D R ++ +++D++Y F
Sbjct: 235 ----KLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYG--TFV 288
Query: 249 SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKV 297
+F S+ L VYS SK G G+R+GTI + D +
Sbjct: 289 D-DFRSLFAEL-------PYNTIGVYSFSKYFGATGWRLGTIALHKDNI 329
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521 |
| >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 60/278 (21%), Positives = 105/278 (37%), Gaps = 35/278 (12%)
Query: 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA-DPGDALLVPTPY 153
G R+A+ ++E+ RG D ++ G L +L PGD +++P
Sbjct: 56 WGTPELREAIVDWLERRRGVPG-LDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELA 114
Query: 154 YPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPL 213
YP ++ G V AA E + + + +P NP
Sbjct: 115 YPTYEVGALL-AGATPV------------------AADDPTELDPVGPDLIWLNSPGNPT 155
Query: 214 GATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEAR-QYKDSERVHI 272
G + L ++ +A + + SDE Y + VS IL+ R D +
Sbjct: 156 GRVLSVDELRAIVAWARERGAVVASDECYLELGW-EGRPVS---ILDPRVCGGDHTGLLA 211
Query: 273 VYSLSKDLGLPGFRVGTIYSYNDKVV---TTARRMSSFTLISSQTQYLLASMLSNKKFTE 329
V+SLSK L G+R G + + +V T R+ + ++ + Q + + L + +
Sbjct: 212 VHSLSKRSNLAGYRAGFVAG-DPALVAELLTVRKHAGL-MVPAPVQAAMVAALGD----D 265
Query: 330 NYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCW 367
++ + R R + L AG AGL+ W
Sbjct: 266 GHVAEQKARYAARRAQLKPALEKAGFRIDHSEAGLYLW 303
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 |
| >gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 21/153 (13%)
Query: 201 VRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILE 260
+ G+L+ NP NP GA + +L E++D A ++ ++ DEIY+ ++ + V ++E++
Sbjct: 172 IAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIG 231
Query: 261 ---ARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYN-DKVVTTARRMSS---FTLIS-- 311
K +SK+L PG R G I YN DK + ++S +I
Sbjct: 232 DVPGIALK---------GISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVC 282
Query: 312 SQT--QYLLASMLSNKKFTENYIKTNRERLQKR 342
S T Q + ++S+ ++ +NY+K +R +KR
Sbjct: 283 STTLPQMAIPRIMSHPEY-KNYLKERNKRYEKR 314
|
Length = 433 |
| >gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 44/247 (17%)
Query: 101 RQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD-PGDALLVPTPYYP--GF 157
R+A+A F D I V G+ +EL+++++ G +++ P + F
Sbjct: 61 REAIAEFY--------GLDAENIAVGNGS---DELISYLVKLFEGKHIVITPPTFGMYSF 109
Query: 158 DRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI 217
L GI ++ + +F I + + K A + V I +P+NP G
Sbjct: 110 YAKLN---GIPVIDVPLK--EDFTIDGERIAEKAKNASA-------VFICSPNNPTGNLQ 157
Query: 218 QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLS 277
+ ++L+ T K + V DE Y+ EF + I + + ++ + S
Sbjct: 158 PEEEILKVLE--TGKPV--VLDEAYA-------EFSGKSLI---GLIDEYPNLILLRTFS 203
Query: 278 KDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTE---NYIKT 334
K GL G R G + + + R F+L + T ++ L + E +YI
Sbjct: 204 KAFGLAGIRAGYAIANEEIIDALYRIKPPFSL-NILTMKIVRLALDHYDLIEERIDYIIK 262
Query: 335 NRERLQK 341
RER+++
Sbjct: 263 ERERVRR 269
|
Length = 337 |
| >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 69/294 (23%), Positives = 121/294 (41%), Gaps = 27/294 (9%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFI--LADPGDALLVPTPY 153
G+ + R+A+A E++ G R +D VT A+A+ L I L PGD ++ P
Sbjct: 67 GIAALREALAEKTERLYGAR--YDPAS-EVTVIASASEGLYAAISALVHPGDEVIYFEPS 123
Query: 154 YPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPL 213
+ + +R + G V I S +F++ + AA R R +++ P NP
Sbjct: 124 FDSYAPIVRLQ-GATPVAIKL-SPEDFRVNWDEVAAAITP------RTRMIIVNTPHNPS 175
Query: 214 GATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIV 273
+ L L +I ++SDE+Y F + S+ AR + +ER IV
Sbjct: 176 ATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSM-----ARHRELAERSVIV 230
Query: 274 YSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQT--QYLLASMLSNKKFTENY 331
S K + G+RVG + +++ R++ F + S+ T Q+ A L+ +Y
Sbjct: 231 SSFGKSYHVTGWRVGYCLA-PAELMDEIRKVHQFMVFSADTPMQHAFAEALAEP---ASY 286
Query: 332 IKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELAL 385
+ +KR ++ L + E L F +E + + L
Sbjct: 287 LGLGAFYQRKR-DLLARELAGSRFELLPSEGSFFMLARFRHFSDE--SDSDFVL 337
|
Length = 384 |
| >gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 32/174 (18%)
Query: 123 IVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQI 182
IV+TAG T A L+ ILA +++P Y ++R + +I+ N+ +
Sbjct: 57 IVITAGITEALYLIG-ILALRDRKVIIPRHTYGEYER-VARFFAARIIK----GPNDPEK 110
Query: 183 TPQALEAAYKEAESKDMRVRGVLIT-NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEI 241
+ +E V+ NP+NP G L+ LLD +N L+ DE
Sbjct: 111 LEELVER------------NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDE- 157
Query: 242 YSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYND 295
AF +FV E E E + + + +K GLPG RVG + + +
Sbjct: 158 ----AF--IDFVKKPESPEG------ENIIKLRTFTKSYGLPGIRVGYVKGFEE 199
|
Length = 311 |
| >gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 44/187 (23%), Positives = 69/187 (36%), Gaps = 21/187 (11%)
Query: 123 IVVTAGATAANELLTFILADPGDALLVPTPYYPGFD--RDLRWRTGIKIVPIHCDSSNNF 180
+ T AN+L GD ++ P + FD G + VP +
Sbjct: 50 ALFVPSGTMANQLALMAHCRRGDEVICGEPAHIYFDETGGHAELGGAQPVP--LPGAEAG 107
Query: 181 QITPQALEAAYKEAESKDM-RVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVS 238
++ + LEAA + + + N N G + L E+ A I L
Sbjct: 108 KLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELREIRAIAREHGIPLHL 167
Query: 239 D--EIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDK 296
D + + + V + EI Y DS + SLSK LG P VG++ + +D
Sbjct: 168 DGARLANAAVALG---VIVKEIT---SYADS----VSMSLSKGLGAP---VGSVLAGSDD 214
Query: 297 VVTTARR 303
+ ARR
Sbjct: 215 FIAYARR 221
|
Length = 288 |
| >gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 20/206 (9%)
Query: 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFD-LNRIVVTAGATAANELLTFILADPGDALLV 149
+ +Y G R+ +A+ + G A D + +++T G A L GD + +
Sbjct: 74 YTEYRGDADIRELLAARLAAFTG--APVDAADELIITPGTQGALFLAVAATVARGDKVAI 131
Query: 150 PTPYYPGFD-RDLRWRTGIKIVPIHCD---SSNNFQITPQALEAAYKEAESKDMRVRGVL 205
P Y F R L ++VP+ D + + LE A+K VR L
Sbjct: 132 VQPDY--FANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAG------VRVFL 183
Query: 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYK 265
+NP+NP G + ++ A R ++ D++YS + + + L A
Sbjct: 184 FSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTH----LRA-LPI 238
Query: 266 DSERVHIVYSLSKDLGLPGFRVGTIY 291
D E V + SK L G+R+G +
Sbjct: 239 DPENVITIMGPSKTESLSGYRLGVAF 264
|
Length = 405 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 7e-06
Identities = 62/265 (23%), Positives = 99/265 (37%), Gaps = 56/265 (21%)
Query: 116 AKFDL--NRIVVTAGATAANELLTFI---LADPGDALLVPTP---YYPGFDRDLRWRTGI 167
KF + RI++ G+ +E+L + PGD ++ YP + G
Sbjct: 78 EKFGVDPERIILGNGS---DEILELLARAYLGPGDEVIYSEHGFAVYPIAAQ----AVGA 130
Query: 168 KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLD 227
K V + + ++ A+ AA R R V I NP+NP G + +E L
Sbjct: 131 KPVEV---PAKDYGHDLDAMLAAVTP------RTRLVFIANPNNPTGTYLPAEEVERFLA 181
Query: 228 FATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDS-----ERVHIVYS--LSKDL 280
++ +V DE Y AE + + Y+D + ++V + SK
Sbjct: 182 -GVPPDVLVVLDEAY-------------AEYVRRKDYEDGLELVAKFPNVVVTRTFSKAY 227
Query: 281 GLPGFRVGTIYSYNDKVVTTA--RRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRER 338
GL G RVG Y + A R F ++S + L + F E N E
Sbjct: 228 GLAGLRVG--YGIAPPEIIDALNRVRQPFN-VNSLALAAAVAALDDDAFVEKSRALNAEG 284
Query: 339 LQKRYQMIIEGLRSAGIECL--KGN 361
+ + E L G+E + GN
Sbjct: 285 MAW----LTEFLAELGLEYIPSVGN 305
|
Length = 367 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 9e-06
Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 24/226 (10%)
Query: 123 IVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQI 182
I V G+ L+ + GD ++ P P + + G +P+ + +
Sbjct: 79 IFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMY-SVYSKIAGAVEIPVKLKEDYTYDV 137
Query: 183 TPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIY 242
+ K E ++ V + NP+NP G+ I+R E+++ + +V DE Y
Sbjct: 138 -----GSFIKVIEKYQPKL--VFLCNPNNPTGSVIER---EDIIKIIEKSRGIVVVDEAY 187
Query: 243 SGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTAR 302
EF + ++++ + ++ +LSK GL G RVG + N+ ++
Sbjct: 188 -------FEFYGNTIVDVINEFEN---LIVLRTLSKAFGLAGLRVGYAVA-NENILKYLN 236
Query: 303 RMSSFTLISSQTQYLLASMLSNKKFTE--NYIKTNRERLQKRYQMI 346
+ S I+S +Q + +L E NYI RERL K I
Sbjct: 237 LVKSPYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKI 282
|
Length = 351 |
| >gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 95/378 (25%), Positives = 144/378 (38%), Gaps = 88/378 (23%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATA--ANELLTFILADPGDALLVPTPY 153
G R+ +A Q RG + I ++ GA N L F P + + V P
Sbjct: 77 GYDFLREKIAENDYQARG--CDISADEIFISDGAKCDTGNILDIF---GPDNTIAVTDPV 131
Query: 154 YP-------------GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMR 200
YP + D R+ IV + C + NNF P+ E E D+
Sbjct: 132 YPVYVDTNVMAGRTGEANEDGRYS---GIVYLPCTAENNF--VPELPE------EKVDI- 179
Query: 201 VRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV--SIAEI 258
+ + P+NP G + + L+ +D+A ++ D Y AF S + SI EI
Sbjct: 180 ---IYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAY--EAFISDPSLPHSIYEI 234
Query: 259 LEARQYKDSERVHI-VYSLSKDLGLPGFRVG--------TIYSYNDKVVTT----ARRMS 305
AR+ I S SK G G R + + + V+ RR S
Sbjct: 235 EGARE------CAIEFRSFSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQS 288
Query: 306 S-FTLISSQTQ------YLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECL 358
+ F +S Q Y K+ + Y++ + +I EGL SAG E
Sbjct: 289 TKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAK--------IIREGLESAGFEVY 340
Query: 359 KG-NAGLFCWMNLSPLLEEQTREGELALW---DSMLHEVKLNISPGSSCHCSEPGWFRVC 414
G NA P + +T +G ++ W D +L E + +PGS S G+FR+
Sbjct: 341 GGVNA---------PYIWVKTPDG-MSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLS 390
Query: 415 FANMSEQTLEVALKRIHN 432
E LE A++RI
Sbjct: 391 AFGSRENVLE-AMERIKK 407
|
Length = 409 |
| >gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 22/173 (12%)
Query: 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQ 263
+ ++ P+NP G + LE+L A + NI L+ D Y G F F EA
Sbjct: 183 ICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAY-GPPFPGIIFS------EATP 235
Query: 264 YKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQT--QYLLASM 321
+ + SLSK LGLPG R G + + +++++ M+ ++ + A M
Sbjct: 236 LWNPNIIL-CMSLSK-LGLPGVRCGIVIA-DEEIIEALSNMNGIISLAPGRLGPAIAAEM 292
Query: 322 LSN---KKFTENYIKTNRERLQKRYQMIIEGLRSA--GIECL--KGNAGLFCW 367
+ + + +E I R +++ Q+ I LR CL K +F W
Sbjct: 293 IESGDLLRLSETVI---RPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLW 342
|
Length = 416 |
| >gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 25/165 (15%)
Query: 169 IVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDF 228
+ + ++TP+ +EAA + + ++ N + G LE +
Sbjct: 99 GQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAV 158
Query: 229 ATRKNIHLVSDEIYSGSAFSS---SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285
+ L D G+ ++ + V++ I + Y DS + + L+K G P
Sbjct: 159 CKEHGLPLHMD----GARLANALVALGVALKTI---KSYVDS----VSFCLTKGGGAP-- 205
Query: 286 RVGTIYSYNDKVVTTARR--------MSSFTLISSQTQYLLASML 322
VG I N ARR M +++Q Y L +
Sbjct: 206 -VGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDV 249
|
Length = 342 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 68/299 (22%), Positives = 118/299 (39%), Gaps = 41/299 (13%)
Query: 74 EASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAAN 133
EA APG+ G R+A+ ++ + RG D ++ G+
Sbjct: 47 EALAAAADAPGYPTT------AGTPELREAIVGWLARRRGVTGL-DPAAVLPVIGSKELV 99
Query: 134 ELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
L +L PGD +++P YP ++ R G +V DS L
Sbjct: 100 AWLPTLLGLGPGDVVVIPELAYPTYEVGARL-AGATVVR--ADS-------LTELGPQ-- 147
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252
R + + +PSNP G + L +++ +A + + SDE Y + +E
Sbjct: 148 -------RPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGW-DAEP 199
Query: 253 VSIAEILEARQYKDS-ERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVT---TARRMSSFT 308
VS IL+ R + V+SLSK L G+R G + D + R +
Sbjct: 200 VS---ILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAG--DPALVAELLEVRKHAGM 254
Query: 309 LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCW 367
++ + Q + + L + + +++ RER +R ++ L +AG AGL+ W
Sbjct: 255 MVPAPVQAAMVAALGD----DAHVREQRERYARRRAVLRPALEAAGFRVDHSEAGLYLW 309
|
Length = 364 |
| >gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 26/193 (13%)
Query: 115 RAKFDLNRIVVTAGATAANELLTFILADPGDALLVP---TPYYPGFDRDLRWRTGIKIVP 171
+ V G+ A + L A PGD ++ YP + + T ++ VP
Sbjct: 69 HLGVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPILVQ-VAGATPVQ-VP 126
Query: 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATR 231
+ D +++ A+ AA + R R + + NP+NP G + + L LD A
Sbjct: 127 LTPDHTHDLD----AMAAAITD------RTRLIFVCNPNNPTGTVVTPAELARFLD-AVP 175
Query: 232 KNIHLVSDEIYSGSAFSSSEFVSIAEILEA-RQYKDSERVHIVYSLSKDLGLPGFRVGTI 290
++ +V DE Y E+V ++ + +D V ++ + SK GL G RVG
Sbjct: 176 ADVLVVLDEAY-------VEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVG-- 226
Query: 291 YSYNDKVVTTARR 303
Y+ V A R
Sbjct: 227 YAVGHPEVIAALR 239
|
Length = 352 |
| >gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 34/191 (17%)
Query: 123 IVVTAGATAANELLTFILAD---PGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNN 179
I+ G T F + P A++V TP + + R L+ G +I ++
Sbjct: 75 ILAGNGETE----SIFAVVSGLKPRRAMIV-TPGFAEYRRALQQ-VGCEIRRYSLREADG 128
Query: 180 FQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSD 239
+Q+T LEA + + + P+NP G +R +L+ + + NI L+ D
Sbjct: 129 WQLTDAILEAL-------TPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILD 181
Query: 240 EIYSGSAFSSSEFVSIAEILEAR----QYKDSERVHIVYSLSKDLGLPGFRVGTIYSYND 295
E AF I I + Q D+ + ++ SL+K +PG R+G + + +D
Sbjct: 182 E-----AF-------IDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDD 229
Query: 296 KVVT--TARRM 304
V ++M
Sbjct: 230 AAVARMRRQQM 240
|
Length = 356 |
| >gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 40/227 (17%)
Query: 83 PGFRENALFQDYHGLK---------SFRQAMASFMEQIRGGRAKFDL--NRIVVTAGATA 131
P F ++AL + H L S R+A F ++ R K +L N ++ T G
Sbjct: 39 PKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKR----RFKIELKENELIPTFGT-- 92
Query: 132 ANELL----TFILADPGDALLV-PTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQA 186
E+L F+L D + + P P+Y ++ + K++ + N+F TP
Sbjct: 93 -REVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIA-SRAKVLLMPLTKENDF--TPSL 148
Query: 187 LEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA 246
E +E + V++ +P+NP G T+ L E + A + + L++DE YS
Sbjct: 149 NEKELQEVDL-------VILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIY 201
Query: 247 FSSSEFVSIAEILEARQY---KDSERVHIVYSLSKDLGLPGFRVGTI 290
++ +LEA + + V ++ S+SK PG R G I
Sbjct: 202 ENTPP----PSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFI 244
|
Length = 374 |
| >gnl|CDD|185378 PRK15481, PRK15481, transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 67/264 (25%), Positives = 114/264 (43%), Gaps = 37/264 (14%)
Query: 116 AKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD 175
F+++ +T+GA A E L PGD++ V P + LR+ G P+ D
Sbjct: 140 VAFEID---LTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLRY-AGFSASPVSVD 195
Query: 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLIT-NPSNPLGATIQRS---VLEELLDFATR 231
+ + P+ LE A + R V++T NP G ++ L LL A
Sbjct: 196 AEG---MQPEKLERALAQG------ARAVILTPRAHNPTGCSLSARRAAALRNLL--ARY 244
Query: 232 KNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIY 291
+ ++ D+ ++ SSS + S+ I + Q R ++ S+SK LG P R+ +
Sbjct: 245 PQVLVIIDDHFA--LLSSSPYHSV--IPQTTQ-----RWALIRSVSKALG-PDLRLAFVA 294
Query: 292 SYNDKVVTTAR---RMSSFT-LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMII 347
S T+AR R++S T +S Q L+ + L++ ++ + R +R Q +
Sbjct: 295 S---DSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQA-RLFYAQRRQKLA 350
Query: 348 EGLRSAGIECLKGNAGLFCWMNLS 371
L+ GI GL W+ L
Sbjct: 351 RALQQYGIAIPSPGDGLNLWLPLD 374
|
Length = 431 |
| >gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 55/241 (22%), Positives = 101/241 (41%), Gaps = 48/241 (19%)
Query: 119 DLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSN 178
D +++ AG ++++ L +PG ++ P + ++R I + +
Sbjct: 80 DEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFS------QYRHNAII-----EGAE 128
Query: 179 NFQITPQA----LEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATR--K 232
++ + LEA K D + + V I NP+NP G + EELL F
Sbjct: 129 VREVPLKDGGHDLEAMLKAI---DEQTKIVWICNPNNPTGTYVNH---EELLSFLESVPS 182
Query: 233 NIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDS-------ERVHIVYSLSKDLGLPGF 285
++ +V DE Y E+V+ A Y D+ E + ++ + SK GL
Sbjct: 183 HVLVVLDEAY-------YEYVT------AEDYPDTLPLLEKYENLIVLRTFSKAYGLAAL 229
Query: 286 RVGTIYSYND--KVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRY 343
RVG + + + + AR + T I+ QY + L ++ F + ++ N E L++ Y
Sbjct: 230 RVGYGIASEELIEKLNIARPPFNTTRIA---QYAAIAALEDQAFLKECVEKNAEGLEQYY 286
Query: 344 Q 344
Sbjct: 287 A 287
|
Length = 359 |
| >gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 36/229 (15%)
Query: 121 NRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNF 180
N IV G + L DPGD +++PTP + ++ + G K V + +F
Sbjct: 88 NIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAK-AHGAKPV--YAKREEDF 144
Query: 181 QITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIH--LVS 238
+ ++ A E + + + + P+NP G I + ++L+ + +
Sbjct: 145 SLDVDSVLNAITE------KTKVIFLCTPNNPTGNLIPEEDIRKILE-----STDALVFV 193
Query: 239 DEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSY-NDKV 297
DE Y V AE + + + I + SK GL G R+G Y + + +
Sbjct: 194 DEAY----------VEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIG--YGFVPEWL 241
Query: 298 VTTARRMSS-FTLIS-SQTQYLLASMLSNKKFTENYIKT---NRERLQK 341
+ R + F+L SQ + A LS+K++ E I+ +RE L
Sbjct: 242 IDYYMRAKTPFSLTRLSQAAAIAA--LSDKEYIEKSIEHGIKSREYLYN 288
|
Length = 361 |
| >gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 18/131 (13%)
Query: 124 VVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIV--PIHCDSSNNFQ 181
+VT T L+ + D GD +L+P + + R G +IV PI D F
Sbjct: 73 IVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIF-DEDGGFD 131
Query: 182 ITPQALEAAYKEAESKDMRVRGVLITN-PSNPLGATIQR-------SVLEELLDFATRKN 233
AL+ A + A +K + ++I N P+NP G T ++EL D T
Sbjct: 132 T--DALKEALQAAYNKG---KVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGT--K 184
Query: 234 IHLVSDEIYSG 244
+ V D+ Y G
Sbjct: 185 VVAVVDDAYFG 195
|
Length = 388 |
| >gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 25/180 (13%)
Query: 114 GRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRT----GIKI 169
R +RI++ G+ ++ + PGD ++ YP F + T ++
Sbjct: 82 ARTGVPADRIILGNGSEDLIAVICRAVLRPGDRVVT---LYPSFPLHEDYPTMMGARVER 138
Query: 170 VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFA 229
V + D + AL AA A R ++ +NPSNP+G+ + L +LD A
Sbjct: 139 VTVTPDLGFDLD----ALCAAVARAP------RMLMFSNPSNPVGSWLTADQLARVLD-A 187
Query: 230 TRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVY-SLSKDLGLPGFRVG 288
T +V DE Y+ A + ++ S +L+AR IV + SK GL G RVG
Sbjct: 188 TPPETLIVVDEAYAEYA-AGDDYPSALTLLKAR-----GLPWIVLRTFSKAYGLAGLRVG 241
|
Length = 371 |
| >gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 29/172 (16%)
Query: 121 NRIVVTAGATAANELLTFILADPGDALLVPTPYYP--GFDRDLRWRTGIKIVPIHCDSSN 178
I+V GA +LL + DPGD ++ P + FD + IK VP D
Sbjct: 104 ENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIK-VPRTPD--- 159
Query: 179 NFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVS 238
F + + A + + K + +T+P+NP G+ I L ++L+ I +V
Sbjct: 160 -FSLDVPRIVEAVETHKPK-----LLFLTSPNNPDGSIISDDDLLKILELP----ILVVL 209
Query: 239 DEIYSGSAFSSSEFVSIAEILEAR--QYKDSERVHIVYSLSKDLGLPGFRVG 288
DE Y EF + E+R K + + ++ + SK GL G RVG
Sbjct: 210 DEAY-------IEFST----QESRMKWVKKYDNLIVLRTFSKRAGLAGLRVG 250
|
Length = 380 |
| >gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 9e-04
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 22/174 (12%)
Query: 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQ 263
+ ++ P+NP G + L +L A + I L+ D Y G F F +
Sbjct: 183 ICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAY-GVPFPGIIFSDATPLW---- 237
Query: 264 YKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQT--QYLLASM 321
+E + + SLSK LGLPG R G I + N+KV+ M+ ++ + A M
Sbjct: 238 ---NENIILCMSLSK-LGLPGSRCGIIIA-NEKVIQAITNMNGIISLAPGRMGPAIAAEM 292
Query: 322 LSN---KKFTENYIKTNRERLQKRYQMIIEGLRSAGIE--CL--KGNAGLFCWM 368
+ + + +E I R + R Q I LR E CL K +F W+
Sbjct: 293 IESGDLLRLSEQVI---RPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWL 343
|
Length = 417 |
| >gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
Query: 124 VVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQIT 183
VVT +A L+T L P D L+ P Y G R L + +
Sbjct: 70 VVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDE--- 126
Query: 184 PQALEAAYKEAESKDMRVRGVLITNPSNPL 213
QAL AA + + VLI PSNPL
Sbjct: 127 -QALRAALAQK------PKLVLIETPSNPL 149
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382 |
| >gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 63/252 (25%), Positives = 95/252 (37%), Gaps = 84/252 (33%)
Query: 82 APGFRENALFQDYHGLKSF---------RQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
P F ++AL + GL S+ R+A+A+++E+ R G D V+ +
Sbjct: 43 TPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLER-RYGLPALDPATQVLPVNGS-- 99
Query: 133 NELLTFILA----DPG--DALLV-PTPYY-------------PGFDRDLRWRTGIKIVPI 172
E L F A D L+V P P+Y P F +
Sbjct: 100 REAL-FAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYF--------------L 144
Query: 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK 232
+CD +NNF A+ A R + + + +P NP GA + ++L + R
Sbjct: 145 NCDPANNFAPDFDAVPAEVWA------RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRY 198
Query: 233 NIHLVSDEIYSGSAFSSSEFVSIAEI-----------LEA-----RQYKDSERVHIVYSL 276
+ SDE YS EI LEA R D +R+ + +SL
Sbjct: 199 GFVIASDECYS-------------EIYFDEAAPPLGLLEAAAELGRD--DFKRLVVFHSL 243
Query: 277 SKDLGLPGFRVG 288
SK +PG R G
Sbjct: 244 SKRSNVPGLRSG 255
|
Length = 396 |
| >gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 37/177 (20%)
Query: 121 NRIVVTAGATAANELLTFILADPG-DALLVPTPYYPG--------FDRDLRWRTGIKIVP 171
+++V+ GA ELL +PG DA+L P Y G I+ VP
Sbjct: 75 EQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTY-GMYSVSAETIG------VEIRTVP 127
Query: 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATR 231
+ +N+Q+ A+ + D V+ V + +P+NP G I L LL+
Sbjct: 128 ----TLDNWQLDLPAIAD------NLD-GVKVVYVCSPNNPTGNLINPQDLRTLLELTRG 176
Query: 232 KNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVG 288
K I +V+DE Y EF A + A + + I+ +LSK L G R G
Sbjct: 177 KAI-VVADEAY-------IEFCPQASL--AGWLAEYPHLVILRTLSKAFALAGLRCG 223
|
Length = 351 |
| >gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 23/121 (19%)
Query: 124 VVTAGATAANELLTFILA-DPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQI 182
V + TAA L LA PGD ++VP+ + + G K V + D + I
Sbjct: 53 VAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLL-VGAKPVFVDIDP-DTLNI 110
Query: 183 TPQALEAAYKEAESKDMRVRGVLIT----NPSNPLGATIQRSVLEELLDFATRKNIHLVS 238
P +EAA R + ++ P + ++ ++ A R + ++
Sbjct: 111 DPDLIEAAITP------RTKAIIPVHLAGQPCD----------MDAIMALAKRHGLPVIE 154
Query: 239 D 239
D
Sbjct: 155 D 155
|
Length = 374 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.004
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 8/144 (5%)
Query: 198 DMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAE 257
D + V I NP+NP G + L + ++ +N +V DE Y ++ +F
Sbjct: 149 DNDTKIVWICNPNNPTGTYVNDRKLTQFIE-GISENTLIVIDEAYY-EYVTAKDFPETLP 206
Query: 258 ILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYL 317
+LE + + ++ + SK GL FRVG + + + F +SS Q
Sbjct: 207 LLEKHK-----NILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRLPFN-VSSLAQKA 260
Query: 318 LASMLSNKKFTENYIKTNRERLQK 341
+ +F E ++ N E L++
Sbjct: 261 ATIAFGDDEFIEEIVRVNTEGLRQ 284
|
Length = 366 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 442 | |||
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 100.0 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 100.0 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 100.0 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 100.0 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 100.0 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 100.0 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 100.0 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.98 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.98 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.98 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.98 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.97 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.97 | |
| PLN02721 | 353 | threonine aldolase | 99.97 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.97 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.97 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.97 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.97 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.97 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.97 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.97 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.97 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.97 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.96 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.96 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.96 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.96 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.96 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.96 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.96 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.96 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.96 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.96 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.96 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.96 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.96 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.95 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.95 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.95 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.95 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.95 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.95 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.95 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.95 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.95 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.95 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.95 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.95 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.94 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.94 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.94 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.94 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.94 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.94 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.94 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.94 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.94 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.93 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.93 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.93 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.93 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.93 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.93 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.93 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.93 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.92 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.92 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.92 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.92 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.92 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.92 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.92 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.92 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.92 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.92 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.92 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.92 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.91 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.91 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.91 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.91 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.91 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.91 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.91 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.91 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.9 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.9 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.9 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.9 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.9 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.9 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.9 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.9 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.9 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.9 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.89 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.89 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.89 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.89 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.89 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.89 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.88 | |
| PLN02651 | 364 | cysteine desulfurase | 99.88 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.88 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.88 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.88 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.88 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.87 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.87 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.87 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.87 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.87 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.87 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.87 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.86 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.86 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.86 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.86 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.86 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.86 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.86 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.85 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.85 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.85 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.85 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.85 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.85 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.84 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.84 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.84 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.84 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.84 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.84 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.84 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.83 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.83 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.83 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.83 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.82 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.82 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.82 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.81 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.81 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.81 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.81 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.8 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.8 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.8 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.8 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.79 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.79 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.79 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.79 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.79 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.79 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.78 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.78 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.77 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.77 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.76 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.75 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.75 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.75 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.74 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.74 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.74 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.74 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.73 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.73 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.73 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.73 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.73 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.73 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.72 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.72 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.72 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.71 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.71 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.71 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.71 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.71 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.71 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.7 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.7 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.69 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.69 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.69 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.68 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.68 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.67 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.67 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.66 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.66 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.65 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.64 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.64 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.64 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.63 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.63 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.63 | |
| PLN02263 | 470 | serine decarboxylase | 99.63 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.62 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.62 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.62 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.62 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.62 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.61 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.61 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.61 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.61 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.61 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.61 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.61 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.6 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.6 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.6 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.6 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.59 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.59 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.59 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.58 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.58 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.58 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.58 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.57 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.57 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.57 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.57 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.57 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.56 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.56 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.56 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.56 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.56 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.56 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.55 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.55 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.53 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.53 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.53 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.53 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.52 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.5 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.48 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.46 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.45 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.4 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.4 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.4 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.37 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.36 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.36 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.35 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.33 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.32 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.31 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 99.31 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.3 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.3 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.28 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.28 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.27 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.19 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.18 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.15 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.13 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.11 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.0 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 99.0 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.93 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.9 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.88 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 98.81 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.8 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.78 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.69 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.57 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.49 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.44 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.3 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.24 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 98.21 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.06 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 97.91 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 97.51 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.42 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 97.26 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 95.53 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 94.65 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 87.66 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 85.44 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 81.12 |
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-73 Score=519.63 Aligned_cols=427 Identities=63% Similarity=1.080 Sum_probs=405.3
Q ss_pred ccccchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCceeeeecccccccHHHHHHHHHhCCCCcccC-CCCCCCCccc
Q 046900 11 SVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQPEASTWG-KGAPGFRENA 89 (442)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 89 (442)
-+.+|+++....||.+++++.+|++|..++|++.+||.|+|+|+.+||.++.+.+++++.+.+.+..+. +|...++++.
T Consensus 36 ~~~lS~~~~~~~~~e~S~yf~g~~~y~~npy~~~~Np~GiIQmGlaENqlc~DL~~~wl~k~~~~~~~~~eg~~~f~~la 115 (471)
T KOG0256|consen 36 NNLLSSKAVDDKHGEDSSYFYGWKAYEKNPYDPIKNPLGIIQMGLAENQLCFDLIESWLSKNPEASNCTREGQSSFDELA 115 (471)
T ss_pred hhhcccccccccccccchHHHHHHhcccCCCCCCCCchHHHHhhhhhhHHHHHHHHHHHHhChhhhhcccccccchhhHh
Confidence 357899999999999999999999999999999999999999999999999999999999988877665 7777788899
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEE
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKI 169 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v 169 (442)
.|++++|++.+|+++|+|+.+.++.....+|+++++++|++.++..++.+|++|||..++|+|.|+++...++.+.|+++
T Consensus 116 ~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTgvei 195 (471)
T KOG0256|consen 116 MFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTGVEI 195 (471)
T ss_pred hcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccCceE
Confidence 99999999999999999999999988899999999999999999999999999999999999999999998887899999
Q ss_pred EEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC
Q 046900 170 VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS 249 (442)
Q Consensus 170 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~ 249 (442)
++|.+..+++|+++++.||+++.++++.+.++|.|+++||+||.|.+++++++..++++|.++|+++|+||+|+..+|+.
T Consensus 196 vpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~ 275 (471)
T KOG0256|consen 196 VPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDK 275 (471)
T ss_pred EEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHH
Q 046900 250 SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 250 ~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~ 329 (442)
..+.|+.++..+.. ...++|.+++|+||.||+||+|+|.|...++.+..+..++..++.+|++.|..++++|.+..+.+
T Consensus 276 ~~F~Sv~ev~~~~~-~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~~vSs~tQ~~la~LLSD~~f~~ 354 (471)
T KOG0256|consen 276 SEFRSVLEVRKDPH-LDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFGLVSSQTQYLLASLLSDEEFTR 354 (471)
T ss_pred cCceEHHHHhhccc-cCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhccCCcHHHHHHHHHHhchHHHHH
Confidence 99999999887621 15689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPG 409 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~ 409 (442)
.++++++++++.+.+++.+.|+++||.+.+..+|+|+|+++...+...+++.+.+++++++++.++.+.||+.|.+..+|
T Consensus 355 ~yl~en~~Rl~~rh~~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpG 434 (471)
T KOG0256|consen 355 EYLRENNKRLRIRHRYIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPG 434 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCceeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred EEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 410 WFRVCFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 410 ~iRls~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
|+|++|+++.++.++-+++||+.++.+..
T Consensus 435 WFRvcFAn~~~~t~~~am~Ri~~~~~~~~ 463 (471)
T KOG0256|consen 435 WFRVCFANMSEETLEVAMRRLKQFLDSQV 463 (471)
T ss_pred eEEEEeccCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999778877779999999987543
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-71 Score=547.68 Aligned_cols=437 Identities=87% Similarity=1.373 Sum_probs=384.5
Q ss_pred CcccccccccccccchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCceeeeecccccccHHHHHHHHHhCCCCcccC-
Q 046900 1 MAIEIEQPSVSVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQPEASTWG- 79 (442)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~- 79 (442)
|+||+|||..+ +|+|+....++.+++++.+|+.+..++|++..||.|+|+|+++||.++.+.+.++++..+....+.
T Consensus 2 ~~~~~~~~~~~--ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~g~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~ 79 (447)
T PLN02607 2 MAIEIAQPAVG--LSKVAVSETHGEDSPYFAGWKAYDEDPYDESHNPSGVIQMGLAENQVSFDLLEEYLKQHPEASSWGG 79 (447)
T ss_pred cchhhccchhh--hhhhhhhcccCCCchHHHHHHHhcCCCCCcccCCCceEEEechhhhhhHHHHHHHHHhCchhhcccc
Confidence 89999999865 599999999999999999999999999999999999999999999999999999999887654432
Q ss_pred CCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH
Q 046900 80 KGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR 159 (442)
Q Consensus 80 ~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~ 159 (442)
.+...+.....|.++.|.+.||+++|+|++++++...++++++|++|+|+++++.+++.++++|||.|++++|+|+.|..
T Consensus 80 ~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~ 159 (447)
T PLN02607 80 KGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDR 159 (447)
T ss_pred ccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHH
Confidence 12223445667999999999999999999988775567899999999999999999999999999999999999999988
Q ss_pred hHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEe
Q 046900 160 DLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSD 239 (442)
Q Consensus 160 ~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~D 239 (442)
.+..+.|+++++++++++++|.+|++.+++++++..+.+.++|+++++|||||||.++|.+++++|+++|++|+++||+|
T Consensus 160 ~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~D 239 (447)
T PLN02607 160 DLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSD 239 (447)
T ss_pred HHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEe
Confidence 77644799999999987778999999999999987777889999999999999999999999999999999999999999
Q ss_pred ccCCcCCCCCCCcccHHHHHhhhcC-CCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHH
Q 046900 240 EIYSGSAFSSSEFVSIAEILEARQY-KDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLL 318 (442)
Q Consensus 240 e~y~~~~~~~~~~~s~~~~~~~~~~-~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~ 318 (442)
|+|++++|++.++.|+.++..+.+. +..++|++++||||.||++|+|+||+++.++.+...++....+..+|+++|.++
T Consensus 240 EiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~~~~s~~~q~~~ 319 (447)
T PLN02607 240 EIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQHLL 319 (447)
T ss_pred ccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 9999999987778888877543211 114789999999999999999999999977788777777766667899999999
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe
Q 046900 319 ASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS 398 (442)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~ 398 (442)
+++|.+.++.+++++.++++++++++.+.+.|++.|+.+.++++|+|+|++++........+.+.++++++++++||.|.
T Consensus 320 ~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~ 399 (447)
T PLN02607 320 ASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNIS 399 (447)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEc
Confidence 99999988878899999999999999999999999999999999999999998654322233456888899887899999
Q ss_pred CCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 399 PGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 399 pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
||+.|+...++|+||+|+.++++.++++++||.+++++++.
T Consensus 400 pG~~f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~~~~ 440 (447)
T PLN02607 400 PGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHRFMDRRKT 440 (447)
T ss_pred CccccCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999877789999999976899999999999999987553
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-69 Score=542.69 Aligned_cols=429 Identities=53% Similarity=0.985 Sum_probs=376.4
Q ss_pred ccccchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCceeeeecccccccHHHHHHHHHhCCCCcccC-CCCCCCCccc
Q 046900 11 SVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQPEASTWG-KGAPGFRENA 89 (442)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 89 (442)
...+||++....||+++++|.+|++|..++|++..||.|+|+|+.+||+++.+.+.+++++.+....+. ++...+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~np~g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (496)
T PLN02376 9 GAILSKIATNDQHGENSEYFDGWKAYDKDPFHLSRNPHGIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIA 88 (496)
T ss_pred hhhhhhhhcccccCCCCchHHHHHHHhCCCCCcccCCCceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhh
Confidence 567999999999999999999999999999999999999999999999999999999999887665444 3555567778
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEE
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKI 169 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v 169 (442)
.|+++.|.++||++||+|+++.+|..+.+++++|++|+|+++++..++.+|++|||.|++++|+|+.|...+....|+++
T Consensus 89 ~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~v 168 (496)
T PLN02376 89 NFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEI 168 (496)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEE
Confidence 89999999999999999999988766678999999999999999999999999999999999999999987763379999
Q ss_pred EEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC
Q 046900 170 VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS 249 (442)
Q Consensus 170 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~ 249 (442)
++++++.+++|++|++.+++++++..+.+.++|+|++||||||||.+++.+++++|+++|++|+++||+||+|+++.|++
T Consensus 169 v~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~ 248 (496)
T PLN02376 169 IPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAG 248 (496)
T ss_pred EEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCC
Confidence 99999876789999999998876544444578999999999999999999999999999999999999999999999988
Q ss_pred CCcccHHHHHhhhcC--CCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchh
Q 046900 250 SEFVSIAEILEARQY--KDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKF 327 (442)
Q Consensus 250 ~~~~s~~~~~~~~~~--~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~ 327 (442)
..+.++.++..+... ...+++++++||||.||+||+|+||++++++.+.+.++....++.+++++|.++++++.++++
T Consensus 249 ~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~~~~vs~~~Q~a~~~~L~d~~~ 328 (496)
T PLN02376 249 GDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSFGLVSSQTQLMLASMLSDDQF 328 (496)
T ss_pred CCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCChhH
Confidence 777888877542100 012467889999999999999999999987888887777777777899999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccc-cChhhHHHHHHHHHHcCcEEEeCCCCCCCC
Q 046900 328 TENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEE-QTREGELALWDSMLHEVKLNISPGSSCHCS 406 (442)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~ 406 (442)
.+++++++++.++++++.+.+.|++.|+++.++++|+|+|++++..... ..++++.++++.++++.||.|.||+.|+..
T Consensus 329 ~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~ 408 (496)
T PLN02376 329 VDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCT 408 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCC
Confidence 7889999999999999999999999999999999999999999865432 333456789999998889999999999876
Q ss_pred CCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 407 EPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 407 ~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
.++||||+|+.++++++++++++|++++.+.+.
T Consensus 409 ~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~~~~ 441 (496)
T PLN02376 409 EPGWFRICFANMDDDTLHVALGRIQDFVSKNKN 441 (496)
T ss_pred CCCEEEEEeeCCCHHHHHHHHHHHHHHHHHhhh
Confidence 789999999976889999999999999976543
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-66 Score=514.23 Aligned_cols=428 Identities=62% Similarity=1.091 Sum_probs=363.1
Q ss_pred cchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCceeeeecccccccHHHHHHHHHhCCCCcccC-CCCCCCCcccccC
Q 046900 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQPEASTWG-KGAPGFRENALFQ 92 (442)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Y~ 92 (442)
+|.+.+...++.+.+++.+|..+..++|++..||.++|+|+++||+++.+.+.++++.......+. .+.........|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~ 83 (468)
T PLN02450 4 LSRKATCNSHGQDSSYFLGWEEYEKNPYDEIKNPSGIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQ 83 (468)
T ss_pred cchhhcccccCCCCchHHHHHHHhcCCCCcccCCCeeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCC
Confidence 567777777778999999999999999999999999999999999999999999888764321110 0111123456799
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEE
Q 046900 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPI 172 (442)
Q Consensus 93 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v 172 (442)
++.|.++||++||+|++++++.+.++++++|++|+|+++++..++.+++++||.|++++|+|+.|...+....|++++++
T Consensus 84 ~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v 163 (468)
T PLN02450 84 DYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPI 163 (468)
T ss_pred CCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEE
Confidence 99999999999999999888766668999999999999999999999999999999999999999887763379999999
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+++++++|.+|++.+++++.+..+.+.++|++++||||||||.++|.+++++|+++|++|+++||+||+|+++.|++..+
T Consensus 164 ~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~ 243 (468)
T PLN02450 164 HCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGF 243 (468)
T ss_pred ecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCc
Confidence 99877789999999999988755556688999999999999999999999999999999999999999999998877666
Q ss_pred ccHHHHHhhh---cCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHH
Q 046900 253 VSIAEILEAR---QYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 253 ~s~~~~~~~~---~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~ 329 (442)
.++.+...+. +.+..++|++++||||.||+||+|+||++++++.+.+.+.+...++.++.++|.++..+|+++.+..
T Consensus 244 ~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~ 323 (468)
T PLN02450 244 VSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDKKFTK 323 (468)
T ss_pred ccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCchhHH
Confidence 6766554210 0112579999999999999999999999997777777766665556679999999999999988766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPG 409 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~ 409 (442)
++++++++.++++++.+.+.|++.|+.+.++++|+|+|++++..........+.+++..+++++||.+.||+.|+...++
T Consensus 324 ~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g 403 (468)
T PLN02450 324 NYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPG 403 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCC
Confidence 68889999999999999999999999998999999999999865443334455778899988789999999999876689
Q ss_pred EEEEEeecCCHHHHHHHHHHHHHHHHHHHhhc
Q 046900 410 WFRVCFANMSEQTLEVALKRIHNFMQKRERRR 441 (442)
Q Consensus 410 ~iRls~~~~~~e~i~~~l~~l~~~l~~~~~~~ 441 (442)
||||+|+..+++++++++++|++++.+...||
T Consensus 404 ~~Rl~f~~~~~~~l~~~l~ri~~~l~~~~~~~ 435 (468)
T PLN02450 404 WFRVCFANMSEETLDLAMKRLKSFVESDSGRR 435 (468)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHhccccc
Confidence 99999996588999999999999998877443
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-61 Score=470.09 Aligned_cols=357 Identities=27% Similarity=0.495 Sum_probs=311.7
Q ss_pred CceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCc-EEE
Q 046900 48 SGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR-IVV 125 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~-i~~ 125 (442)
.++|+|+++++.++. +.+.+.+...... ....|.+..|.++||++||+++.++++ +.+++++ |++
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~-----------~~~~Y~~~~G~~~LReaia~~~~~~~~--~~~~~~~eiiv 94 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALEE-----------GGTHYTPSAGIPELREAIAEKYKRRYG--LDVDPEEEIIV 94 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhc-----------ccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCeEEE
Confidence 689999999997753 4455554443321 011677899999999999999999987 5677876 999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCC-CCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSS-NNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
|+|+++++..++.+++++||.|++++|+|+.|...+.. .|++++.++++.+ ++|.+|++.|++++++ ++|+|
T Consensus 95 t~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~-~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~------ktk~i 167 (393)
T COG0436 95 TAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKL-AGGKPVPVPLDEEENGFKPDLEDLEAAITP------KTKAI 167 (393)
T ss_pred eCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHh-cCCEEEEEeCCcCccCCcCCHHHHHhhcCc------cceEE
Confidence 99999999999999999999999999999999999995 9999999998765 4899999999999986 89999
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
+++|||||||.+++++++++|+++|++|+++||.||+|.++.|++..+.|+.++... .+++|.+.||||.++++|
T Consensus 168 ~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~-----~~~~i~i~s~SK~~~mtG 242 (393)
T COG0436 168 ILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGA-----RDRTITINSFSKTYGMTG 242 (393)
T ss_pred EEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCC-----cceEEEEecccccccccc
Confidence 999999999999999999999999999999999999999999998767788877542 478999999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec-C
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK-G 360 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~ 360 (442)
||+||++++++.+.+.+.+.... .+.+.+.|.++.++|+..+. ...++.+++.|++||+.+.+.|.+. |+.+.. |
T Consensus 243 wRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~-~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p 321 (393)
T COG0436 243 WRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS-DEVVEEMREEYRERRDLLVEALNEIGGLSVVKPP 321 (393)
T ss_pred cceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCC
Confidence 99999999657777777644433 46788999999999998754 4567788899999999999999987 599988 8
Q ss_pred CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC-CCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 361 NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS-EPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 361 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~-~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+|+||+|++++... ++.+++.+|++++||.|.||+.|+.. +.+++|||++. +.+++++++++|.++++..
T Consensus 322 ~Ga~Y~~~~i~~~~------d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~-~~~~l~~a~~rl~~~~~~~ 392 (393)
T COG0436 322 EGAFYLFPKIPELL------DSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRLARFLAEY 392 (393)
T ss_pred CeeEEEEeecCCCC------CHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEec-CHHHHHHHHHHHHHHHHhc
Confidence 89999999999752 47899999999999999999999985 77999999998 7799999999999998764
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=434.66 Aligned_cols=355 Identities=21% Similarity=0.328 Sum_probs=290.8
Q ss_pred CCCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cE
Q 046900 46 NPSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RI 123 (442)
Q Consensus 46 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i 123 (442)
.+.++|+|+.++++++ ++.+.+.+.+.... .....|++..|.++||++||+|+.+.+| +.++++ +|
T Consensus 28 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~I 95 (388)
T PRK07366 28 AGKELIDLSLGSSDLPAPAHALEAIAQSLHD----------PSTHGYLLFHGTLDFREAAAQWYEQRFG--LAVDPETEV 95 (388)
T ss_pred cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhC----------cccCCCCCCCCCHHHHHHHHHHHHHhhC--CcCCCcCeE
Confidence 3557899999998875 45555555543211 1235698889999999999999998776 557888 69
Q ss_pred EEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 124 VVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 124 ~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
++|+|+++++.+++.+++++||.|++++|+|+.|...++. .|++++.+|++++++|.+|++++++.+.. ++|+
T Consensus 96 ~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~ 168 (388)
T PRK07366 96 LPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYL-AGGQIYPMPLRAENDFLPVFADIPTEVLA------QARL 168 (388)
T ss_pred EECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHh-cCCEEEEEECCCccCCCCCHHHHHHhhcc------cceE
Confidence 9999999999999999999999999999999999999985 99999999998777899999999877654 6789
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC-cccHHHHHhhhcCCCCCcEEEEecCcccCCC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE-FVSIAEILEARQYKDSERVHIVYSLSKDLGL 282 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~-~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~ 282 (442)
+++||||||||.++|.+++++|+++|++|+++||+||+|.++.|++.. +.++.+++.. .+++|+++||||.||+
T Consensus 169 i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~-----~~~vi~~~SfSK~~g~ 243 (388)
T PRK07366 169 MVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPE-----KSVSIEFFTLSKSYNM 243 (388)
T ss_pred EEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCC-----cccEEEEeecccccCC
Confidence 999999999999999999999999999999999999999999987643 4566665442 3678999999999999
Q ss_pred CCceeEEEeecCHHHHHHHHHccccCCC---cHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 046900 283 PGFRVGTIYSYNDKVVTTARRMSSFTLI---SSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK 359 (442)
Q Consensus 283 ~G~RiG~i~~~~~~~~~~~~~~~~~~~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 359 (442)
||+|+||+++ ++.+.+.+.+....+.. +.+.|.+++++..+ ++++++.++.++++|+.+.+.|++.|+.+..
T Consensus 244 ~GlRiG~~v~-~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~----~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~ 318 (388)
T PRK07366 244 GGFRIGFAIG-NAQLIQALRQVKAVVDFNQYRGILNGAIAALTGP----QATVQQTVQIFRQRRDAFINALHQIGWPVPL 318 (388)
T ss_pred cchhheehcC-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence 9999999998 56666666654443222 33345554444332 4578889999999999999999988888778
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
|++|+|+|++++..... ++.++++.+++++||.+.||+.|+...++|+||+++. +++++++++++|++++
T Consensus 319 p~~g~f~~~~~~~~~~~----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 319 PEATMYVWAKLPEPWQG----NSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVH-DPDILEEAVERIAAFL 388 (388)
T ss_pred CCeeEEEEEECCcccCC----CHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecC-CHHHHHHHHHHHHHhC
Confidence 99999999999864210 2567888887777999999999975556899999997 7899999999998763
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-55 Score=429.47 Aligned_cols=350 Identities=20% Similarity=0.388 Sum_probs=296.1
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC-CcEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL-NRIV 124 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-~~i~ 124 (442)
..++|+|+.++++++ ++.+.+.+.+.... .....|+ ..|.++||++||+|+++++| +.+++ ++|+
T Consensus 31 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~----------~~~~~y~-~~G~~~lr~aia~~~~~~~g--~~~~~~~~I~ 97 (399)
T PRK07681 31 GHKMIDLSIGNPDMPPADFVREEMVHTANQ----------KESYGYT-LSGIQEFHEAVTEYYNNTHN--VILNADKEVL 97 (399)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhc----------cccCCCC-CCCcHHHHHHHHHHHHHHhC--CCCCCCCeEE
Confidence 457899999988764 45566655543211 0123354 47999999999999998877 55788 7999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++.+++.+++++||.|++++|+|+.|...++. .|++++++|++++++|.+|++.+++.+.+ +++++
T Consensus 98 it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~-~G~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~v 170 (399)
T PRK07681 98 LLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQM-AGATSYYMPLKKENDFLPDLELIPEEIAD------KAKMM 170 (399)
T ss_pred ECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHh-cCCEEEEEecCCCCCCcCCHHHHHHhccc------cceEE
Confidence 999999999999999999999999999999999999985 99999999998877899999999988754 78999
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
+++|||||||.++|.+++++|+++|++++++||+||+|.++.|++..+.++.++... .+++|+++||||.||+||
T Consensus 171 ~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~-----~~~~i~~~S~SK~~~~~G 245 (399)
T PRK07681 171 ILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGA-----KEVGVEINSLSKSYSLAG 245 (399)
T ss_pred EEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCC-----cccEEEEeecccccCCcc
Confidence 999999999999999999999999999999999999999998876655666655432 468999999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc
Q 046900 285 FRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA 362 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 362 (442)
+|+||+++ ++.+.+.+..... .+.++.+.|.++..++.++. +++++.++.++++++.+.+.|++.|+++..|.+
T Consensus 246 lRiG~~i~-~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~ 321 (399)
T PRK07681 246 SRIGYMIG-NEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGA---AFCEKNRGIYQERRDTLVDGFRTFGWNVDKPAG 321 (399)
T ss_pred ceeEEEec-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCe
Confidence 99999998 5666666655443 35688899999999998753 467888899999999999999998988878899
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHN 432 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~ 432 (442)
|+|+|++++... ++.+++..+++++||.+.||+.|+...++|+||+++. +++++++++++|++
T Consensus 322 g~f~~~~l~~~~------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~l~~l~~ 384 (399)
T PRK07681 322 SMFVWAEIPKGW------TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ-DEEVLQQAVENIRN 384 (399)
T ss_pred eeEEEEECCCCC------CHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 999999998643 2578899998867999999999976556899999997 78999999999998
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-54 Score=426.66 Aligned_cols=358 Identities=19% Similarity=0.314 Sum_probs=293.3
Q ss_pred CCceeeeeccccc-c-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC-CcE
Q 046900 47 PSGVIQMGLAENQ-V-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL-NRI 123 (442)
Q Consensus 47 ~~~~i~l~~~~n~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-~~i 123 (442)
+.++|+|+.+.+. . +++.+.+.+.+.... .....|++..|.++||++|++|+.+.+| +.+++ ++|
T Consensus 38 ~~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~----------~~~~~Y~~~~G~~~LR~aia~~l~~~~g--~~~~~~~~I 105 (405)
T PRK06207 38 PGRPVDFSHGDVDAHEPTPGAFELFSAGVER----------GGVQAYTEYRGDADIRELLAARLAAFTG--APVDAADEL 105 (405)
T ss_pred CCCceecCCcCCCCCCCCHHHHHHHHHHHhc----------CCCccCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCCE
Confidence 5678899987643 2 334444444332211 1235799999999999999999998877 45677 899
Q ss_pred EEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC---CCCCCcCCHHHHHHHHHHHHhcCCc
Q 046900 124 VVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD---SSNNFQITPQALEAAYKEAESKDMR 200 (442)
Q Consensus 124 ~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~---~~~~~~~d~~~l~~~l~~~~~~~~~ 200 (442)
++|+|+++++.+++.+++++||.|++++|+|+.+...++. .|++++.++++ .+++|.+|++.|++.+++ +
T Consensus 106 ~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~-~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~------~ 178 (405)
T PRK06207 106 IITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEF-FEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA------G 178 (405)
T ss_pred EEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHH-cCCEEEEEeccccCcccCCCcCHHHHHHhhhh------c
Confidence 9999999999999999999999999999999999998884 99999999986 334688999999998875 6
Q ss_pred eeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccC
Q 046900 201 VRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDL 280 (442)
Q Consensus 201 ~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~ 280 (442)
+++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++..+.. ..+++++++||||+|
T Consensus 179 ~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~-----~~~~vi~i~SfSK~~ 253 (405)
T PRK06207 179 VRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPI-----DPENVITIMGPSKTE 253 (405)
T ss_pred CeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCC-----CcCcEEEEecchhhc
Confidence 789999999999999999999999999999999999999999999987755555554422 247999999999999
Q ss_pred CCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCee
Q 046900 281 GLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIEC 357 (442)
Q Consensus 281 g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 357 (442)
++||+|+||+++ ++.+.+.+...... ...+.++|.++..++++.. .++++..+.++++|+.+.+.|++. ++++
T Consensus 254 ~lpGlRiG~ii~-~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 329 (405)
T PRK06207 254 SLSGYRLGVAFG-SPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPD---GWMKDRIARHQAIRDDLLRVLRGVEGVFV 329 (405)
T ss_pred cCcccceEEEEc-CHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence 999999999998 46666666654433 3456789999999997642 234555667788899999999877 7888
Q ss_pred ecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 358 LKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 358 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
..|++|+|+|++++.... ++.++++.|++++||.+.||+.|+...++++||+++. +.+++++++++|+++++++
T Consensus 330 ~~p~gg~fl~~~l~~~~~-----~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~-~~~~l~~al~rl~~~l~~~ 403 (405)
T PRK06207 330 RAPQAGSYLFPRLPRLAV-----SLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ-DHAAAVAAAERIAQLIERY 403 (405)
T ss_pred cCCCeeEEEEEeCcccCC-----CHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence 889999999999985311 2567888888667999999999976567899999998 8899999999999999876
Q ss_pred H
Q 046900 438 E 438 (442)
Q Consensus 438 ~ 438 (442)
+
T Consensus 404 ~ 404 (405)
T PRK06207 404 R 404 (405)
T ss_pred h
Confidence 4
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=428.84 Aligned_cols=366 Identities=19% Similarity=0.283 Sum_probs=293.8
Q ss_pred CCceeeeecccc---cc-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCc
Q 046900 47 PSGVIQMGLAEN---QV-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR 122 (442)
Q Consensus 47 ~~~~i~l~~~~n---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~ 122 (442)
..++++|+++++ .+ +++.+.+.+.+.... ....+|++..|.++||+++|+|+++++| +.+++++
T Consensus 31 g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~----------~~~~~Y~~~~G~~~LReaia~~~~~~~g--~~~~~~~ 98 (433)
T PRK06855 31 GVKITWENIGDPIAKGEKIPDWMKEIVAELVMD----------DKSYGYCPTKGVLETREFLAELNNKRGG--AQITPDD 98 (433)
T ss_pred cccccccccCCCcccCCCCCHHHHHHHHHHhhc----------CCCCCCCCCCCCHHHHHHHHHHHHhccC--CCCCHhH
Confidence 346788888876 23 345555555543211 1245799999999999999999998766 5678999
Q ss_pred EEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCcee
Q 046900 123 IVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVR 202 (442)
Q Consensus 123 i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 202 (442)
|++|+|+++++.+++. ++++||.|++++|+|+.|........|++++.++++++++|.+|+++|++.++. ..+++
T Consensus 99 I~it~G~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~----~~~~~ 173 (433)
T PRK06855 99 IIFFNGLGDAIAKIYG-LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKY----NPSIA 173 (433)
T ss_pred EEEcCcHHHHHHHHHH-hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhc----CCCce
Confidence 9999999999999985 789999999999999998754332368999999998777899999999998863 12578
Q ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCC
Q 046900 203 GVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGL 282 (442)
Q Consensus 203 ~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~ 282 (442)
+++++|||||||.++|.+++++|+++|++||++||+||+|.++.|++..+.++.++.++ .++|+++||||.|++
T Consensus 174 ~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~------~~~I~~~S~SK~~~~ 247 (433)
T PRK06855 174 GILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGD------VPGIALKGISKELPW 247 (433)
T ss_pred EEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCc------CCeEEEecCccccCC
Confidence 99999999999999999999999999999999999999999999977666787777542 467999999999999
Q ss_pred CCceeEEEeecC----HHHHHHHH---Hcc-ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 046900 283 PGFRVGTIYSYN----DKVVTTAR---RMS-SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA- 353 (442)
Q Consensus 283 ~G~RiG~i~~~~----~~~~~~~~---~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 353 (442)
||+|+||+++++ +.+...++ ... ....++++.|.++..++.++.+ ++|++++++.|+++++.+.+.|++.
T Consensus 248 pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~L~~~~ 326 (433)
T PRK06855 248 PGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEY-KNYLKERNKRYEKRSNIAYEKLKDVP 326 (433)
T ss_pred CcceEEEEEEeCCchhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcH-HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999842 22233322 221 2234678999999999988765 7789999999999999999999886
Q ss_pred CCeeecCCceEEEEEecCCcccc----cC-----------------hhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEE
Q 046900 354 GIECLKGNAGLFCWMNLSPLLEE----QT-----------------REGELALWDSMLHEVKLNISPGSSCHCSEPGWFR 412 (442)
Q Consensus 354 g~~~~~~~~g~~~~~~~~~~~~~----~~-----------------~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iR 412 (442)
|+.+..|+||||+|+++++.... .. ..++.+++..+++++||.+.||+.|+.. ..++|
T Consensus 327 ~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~-~~~~R 405 (433)
T PRK06855 327 GLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTE-LNGFR 405 (433)
T ss_pred CeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCC-CCceE
Confidence 78888999999999999864200 00 0124577777778889999999999743 34599
Q ss_pred EEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 413 VCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 413 ls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
||++..+++++++++++|++++++.
T Consensus 406 ls~~~~~~~~i~~~~~~l~~~~~~~ 430 (433)
T PRK06855 406 VTLLERDEEKFEWIYQTLAEKIEEY 430 (433)
T ss_pred EEECCCcHHHHHHHHHHHHHHHHHH
Confidence 9999668999999999999998764
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-54 Score=425.88 Aligned_cols=366 Identities=22% Similarity=0.382 Sum_probs=296.3
Q ss_pred CCCceeeeecccccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-c
Q 046900 46 NPSGVIQMGLAENQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-R 122 (442)
Q Consensus 46 ~~~~~i~l~~~~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~ 122 (442)
++.++++|+.+.+.. +...+....+.... .....|++..|.++||+++|+|+.+.++ +.++++ +
T Consensus 31 ~~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lR~~ia~~l~~~~~--~~~~~~~~ 97 (403)
T PRK08636 31 AGEDIIDFSMGNPDGPTPQHIIDKLCESAQK-----------PKTHGYSVSKGIYKLRLAICNWYKRKYN--VDLDPETE 97 (403)
T ss_pred cCCCEEEcCCcCCCCCCCHHHHHHHHHHhcC-----------CccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCe
Confidence 456789999886553 33344444433221 1246799999999999999999988776 557887 7
Q ss_pred EEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHh-cCCce
Q 046900 123 IVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAES-KDMRV 201 (442)
Q Consensus 123 i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~-~~~~~ 201 (442)
|++|+|+++++.+++.+|+++||.|++++|+|+.+...++. .|+++++++++.+++|.+|++.+.+.+++..+ ...++
T Consensus 98 I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 176 (403)
T PRK08636 98 VVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFIL-AGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKP 176 (403)
T ss_pred EEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHh-cCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCc
Confidence 99999999999999999999999999999999999999985 99999999987555788998866544443221 13478
Q ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC
Q 046900 202 RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG 281 (442)
Q Consensus 202 ~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g 281 (442)
++++++|||||||.++|.+++++|+++|++|+++||+||+|+++.|++..+.++.++... .+++++++||||.||
T Consensus 177 ~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~-----~~~~i~~~S~SK~~~ 251 (403)
T PRK08636 177 KYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGA-----KDVAVESYTLSKSYN 251 (403)
T ss_pred eEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCc-----cccEEEEEecccccC
Confidence 899999999999999999999999999999999999999999998876555666665321 357888999999999
Q ss_pred CCCceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 046900 282 LPGFRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK 359 (442)
Q Consensus 282 ~~G~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 359 (442)
+||+|+||+++ ++.+...+.+... .+.++++.|.++..++... .+++++.++.++++++.+.+.|++.|+.+..
T Consensus 252 ~~GlRiG~iv~-~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 327 (403)
T PRK08636 252 MAGWRVGFVVG-NKKLVGALKKIKSWLDYGMFTPIQVAATIALDGD---QSCVEEIRETYRKRRDVLIESFANAGWELQK 327 (403)
T ss_pred CccceeeeeeC-CHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence 99999999998 5566666655443 2456778888887776532 4578889999999999999999998888888
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
|.+|+|+|++++...... ++.+++..+++++||.+.||..|+....+|+||+++. +++++++++++|+++++.++
T Consensus 328 p~~g~~~~~~l~~~~~~~---~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~~~rl~~~l~~~~ 402 (403)
T PRK08636 328 PRASMFVWAKIPEPARHL---GSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIE-NENRIRQAARNIKKFLKELE 402 (403)
T ss_pred CCcceEEEEECCCccCCC---CHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhhc
Confidence 999999999998642111 2567888888777999999999976667899999995 89999999999999998754
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-54 Score=428.37 Aligned_cols=364 Identities=20% Similarity=0.342 Sum_probs=293.7
Q ss_pred CCceeeeecccccc-----cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 47 PSGVIQMGLAENQV-----SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 47 ~~~~i~l~~~~n~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
..++|+|+.+++.+ +.+.+.+.+.+.... .....|++..|.++||+++|+|+++.++ .+++++
T Consensus 65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~----------~~~~~Y~~~~G~~~lR~aiA~~~~~~~~--~~~~~~ 132 (462)
T PLN02187 65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRS----------GKGNSYGPGAGILPARRAVADYMNRDLP--HKLTPE 132 (462)
T ss_pred CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhC----------CCCCCCCCCCChHHHHHHHHHHHHHhcC--CCCCcc
Confidence 46799999997652 123333333332211 1235798889999999999999998766 568899
Q ss_pred cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCce
Q 046900 122 RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (442)
+|++|+|++++|.+++.+|+++||.|++++|+|+.|...+.. .|++++.+++.++++|.+|++.|++.+.+ ++
T Consensus 133 ~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~-~g~~~~~~~l~~~~~~~~d~~~l~~~~~~------~~ 205 (462)
T PLN02187 133 DIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAY-SGLEVRKFDLLPEKEWEIDLEGIEAIADE------NT 205 (462)
T ss_pred cEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHH-cCCEEEEEeCccccCCccCHHHHHHhcCC------Cc
Confidence 999999999999999999999999999999999999988884 99999999997667899999999988754 67
Q ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC
Q 046900 202 RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG 281 (442)
Q Consensus 202 ~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g 281 (442)
++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++..+.. ..++++++||||.|+
T Consensus 206 ~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~------~~~vi~l~SfSK~f~ 279 (462)
T PLN02187 206 VAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFAS------IVPVLTLAGISKGWV 279 (462)
T ss_pred EEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhcc------CCcEEEEecchhhcC
Confidence 89999999999999999999999999999999999999999999997766667766543 257999999999999
Q ss_pred CCCceeEEEeecCH-HH---HHHHHHccccC----CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 282 LPGFRVGTIYSYND-KV---VTTARRMSSFT----LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 282 ~~G~RiG~i~~~~~-~~---~~~~~~~~~~~----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
+||||+||++++++ .+ .+.+......+ .++.+.|.++.+++++.. .+|+++.++.++++++++.+.|++.
T Consensus 280 ~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~--~~~l~~~~~~l~~~r~~l~~~L~~~ 357 (462)
T PLN02187 280 VPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD--KNFFAKKNKILKHNVDLVCDRLKDI 357 (462)
T ss_pred CccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999998543 22 23343333322 347899999999997532 4678999999999999999999987
Q ss_pred CC-e-eecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHH
Q 046900 354 GI-E-CLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIH 431 (442)
Q Consensus 354 g~-~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~ 431 (442)
+. . +..|++|+|+|++++.... ....++.+++..+++++||.+.||+.|+ .++||||+++. +++.+++++++|.
T Consensus 358 ~~~~~~~~P~gg~fl~~~l~~~~~-~~~~~~~~~~~~ll~~~gV~v~pG~~fg--~~~~iRis~~~-~~e~l~~al~rL~ 433 (462)
T PLN02187 358 PCVVCPKKPESCTYLLTKLELSLM-DNIKDDIDFCVKLAREENLVFLPGDALG--LKNWMRITIGV-EAHMLEDALERLK 433 (462)
T ss_pred CCCcCCCCCCEeEEEEeecChhhC-CCCCCHHHHHHHHHhhCCEEEECccccC--CCCeEEEEeCC-CHHHHHHHHHHHH
Confidence 43 3 2368899999998863211 0011255777777777799999999996 36899999998 7899999999999
Q ss_pred HHHHHHHhhc
Q 046900 432 NFMQKRERRR 441 (442)
Q Consensus 432 ~~l~~~~~~~ 441 (442)
++++++.++.
T Consensus 434 ~~l~~~~~~~ 443 (462)
T PLN02187 434 GFCTRHAKKT 443 (462)
T ss_pred HHHHHhhhcc
Confidence 9999887754
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=427.45 Aligned_cols=349 Identities=23% Similarity=0.379 Sum_probs=282.6
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc-CCCCeEEEcCCCCcChHHhHhhhcC
Q 046900 88 NALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA-DPGDALLVPTPYYPGFDRDLRWRTG 166 (442)
Q Consensus 88 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~~~G 166 (442)
...|++..|.++||++||+|+++.+| +.+++++|++|+|+++++.+++.+++ ++||.|++++|+|+.|...++. .|
T Consensus 108 ~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~-~g 184 (481)
T PTZ00377 108 TGAYTDSAGYPFVRKAVAAFIERRDG--VPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITL-LG 184 (481)
T ss_pred ccCcCcccCCHHHHHHHHHHHHHhcC--CCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHH-cC
Confidence 45799999999999999999998776 56789999999999999999999998 7999999999999999999995 99
Q ss_pred cEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 167 IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 167 ~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
++++.++++++++|.+|++.|++.+.+...++.++|+++++|||||||.++|.+++++|+++|++|+++||+||+|.++.
T Consensus 185 ~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~ 264 (481)
T PTZ00377 185 GKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENI 264 (481)
T ss_pred CEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhc
Confidence 99999999887889999999999997654444578999999999999999999999999999999999999999999999
Q ss_pred CCC-CCcccHHHHHhhhcCCC--CCcEEEEecCccc-CCCCCceeEEEee--cCHHHHHHHHHccc-cCCCcHHHHHHHH
Q 046900 247 FSS-SEFVSIAEILEARQYKD--SERVHIVYSLSKD-LGLPGFRVGTIYS--YNDKVVTTARRMSS-FTLISSQTQYLLA 319 (442)
Q Consensus 247 ~~~-~~~~s~~~~~~~~~~~~--~~~vi~~~S~SK~-~g~~G~RiG~i~~--~~~~~~~~~~~~~~-~~~~s~~~q~~~~ 319 (442)
|++ ..+.++.++..+..... ..++|+++||||. +++||||+||+++ .++.+.+.+.+... .+..++++|.++.
T Consensus 265 ~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~~~~~~~~~Q~a~~ 344 (481)
T PTZ00377 265 YDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASINLCSNVVGQLMTG 344 (481)
T ss_pred cCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhheecCCChHHHHHHH
Confidence 853 45667665433210000 1369999999997 5999999999986 25666666655443 3467889999999
Q ss_pred HHhcCch----h---HHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEEEEecCC--cccc----cChhhHHHH
Q 046900 320 SMLSNKK----F---TENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSP--LLEE----QTREGELAL 385 (442)
Q Consensus 320 ~~l~~~~----~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~--~~~~----~~~~~~~~l 385 (442)
.++++.. . ..+++++.++.|+++++.+.+.|++. |+.+..|+||||+|++++. .... ....++..+
T Consensus 345 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~ 424 (481)
T PTZ00377 345 LMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLY 424 (481)
T ss_pred HHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHH
Confidence 9996421 1 13344555567899999999999987 8999999999999987642 1100 001123456
Q ss_pred HHHHHHcCcEEEeCCCCCCCC-CCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 386 WDSMLHEVKLNISPGSSCHCS-EPGWFRVCFANMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 386 ~~~l~~~~gi~v~pg~~f~~~-~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
+..+++++||.+.||+.|+.. +.+++|||++. +++++++++++|+++++++.++
T Consensus 425 ~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~-~~e~l~~~l~rl~~~~~~~~~~ 479 (481)
T PTZ00377 425 CLELLESTGIVVVPGSGFGQKPGTYHFRITILP-PEEQIEEMVKKIKEFHESFMKK 479 (481)
T ss_pred HHHHHHHcCEEEeCCcccCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHHHHHh
Confidence 677888889999999999753 35699999995 8889999999999999876543
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-54 Score=422.00 Aligned_cols=353 Identities=20% Similarity=0.319 Sum_probs=289.6
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCc-cCCC-cE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAK-FDLN-RI 123 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~~-~i 123 (442)
..++|+|+.++++++ ++.+.+.+.+.. .....|+++.|.++||++||+|+++++| ++ ++++ +|
T Consensus 28 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~~~i 93 (396)
T PRK09147 28 DLPPISLSIGEPKHPTPAFIKDALAANL------------DGLASYPTTAGLPALREAIAAWLERRYG--LPALDPATQV 93 (396)
T ss_pred CCCeEecCCCCCCCCCCHHHHHHHHHHh------------hhhcCCCCCCCCHHHHHHHHHHHHHHhC--CCcCCccceE
Confidence 467899999998875 455666555442 1246799999999999999999998877 55 6775 89
Q ss_pred EEecChHHHHHHHHHhhcCC---CCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCc
Q 046900 124 VVTAGATAANELLTFILADP---GDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMR 200 (442)
Q Consensus 124 ~~t~G~~~ai~~~~~~l~~~---gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 200 (442)
++|+|+++++.+++++++++ ||.|++++|+|+.|...++. .|++++.+|++++++|.+|++.+++.+.+ +
T Consensus 94 ~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~-~g~~~~~vp~~~~~~~~~d~~~l~~~~~~------~ 166 (396)
T PRK09147 94 LPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALL-AGAEPYFLNCDPANNFAPDFDAVPAEVWA------R 166 (396)
T ss_pred EECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHh-cCCEEEEeccCccccCccCHHHHHHHHhh------c
Confidence 99999999999999999999 89999999999999999885 99999999998777899999999987764 7
Q ss_pred eeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC-CcccHHHHHhhhcCCCCCcEEEEecCccc
Q 046900 201 VRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS-EFVSIAEILEARQYKDSERVHIVYSLSKD 279 (442)
Q Consensus 201 ~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~S~SK~ 279 (442)
+|++++||||||||.++|.+++++|+++|++|+++||+||+|.++.|++. ...+........+.+..+++|+++||||.
T Consensus 167 ~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~ 246 (396)
T PRK09147 167 TQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKR 246 (396)
T ss_pred cEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccc
Confidence 89999999999999999999999999999999999999999999988663 22222221111000124799999999999
Q ss_pred CCCCCceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Q 046900 280 LGLPGFRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIEC 357 (442)
Q Consensus 280 ~g~~G~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 357 (442)
|++||+|+||++++ +.+.+.+.+... .+.++++.|.++.+.+.. .+++++.++.++++++.+.+.|++. +.+
T Consensus 247 ~~~~GlRiG~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~~~-~~~ 320 (396)
T PRK09147 247 SNVPGLRSGFVAGD-AALLKKFLLYRTYHGCAMPPAVQAASIAAWND----EAHVRENRALYREKFDAVTPILAPV-LDV 320 (396)
T ss_pred cCCccceeeeecCC-HHHHHHHHHHhhhcccCCCHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 99999999999995 566665554443 256788899988777754 3467888999999999999999875 667
Q ss_pred ecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC------CCCCEEEEEeecCCHHHHHHHHHHHH
Q 046900 358 LKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC------SEPGWFRVCFANMSEQTLEVALKRIH 431 (442)
Q Consensus 358 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~------~~~~~iRls~~~~~~e~i~~~l~~l~ 431 (442)
..|++|+|+|++++. ++.+++..|++++||.+.||+.|+. ...+++||+++. +++++++++++|+
T Consensus 321 ~~p~~g~f~~~~~~~--------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~-~~~~l~~~l~rl~ 391 (396)
T PRK09147 321 QLPDAGFYLWAKVPG--------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA-PLAECVEAAERIV 391 (396)
T ss_pred CCCCeeEEEEEECCC--------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC-CHHHHHHHHHHHH
Confidence 779999999999982 2567888888777999999999863 225799999998 7889999999999
Q ss_pred HHHH
Q 046900 432 NFMQ 435 (442)
Q Consensus 432 ~~l~ 435 (442)
+++.
T Consensus 392 ~~~~ 395 (396)
T PRK09147 392 DFCR 395 (396)
T ss_pred HHhc
Confidence 8874
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-54 Score=434.09 Aligned_cols=360 Identities=21% Similarity=0.363 Sum_probs=290.7
Q ss_pred CCceeeeecccc---cc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 47 PSGVIQMGLAEN---QV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 47 ~~~~i~l~~~~n---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
..++|+|+++++ .+ |...+....+... ...+|++..|..+||++||+|+.++.+ ..++++
T Consensus 145 g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~-------------~~~~Y~~~~G~~~lReaia~~~~~~~~--~~~~~~ 209 (517)
T PRK13355 145 GTHILKLNIGNPAPFGFRTPDEVVYDMAQQLT-------------DTEGYSDSKGLFSARKAIMQYAQLKGL--PNVDVD 209 (517)
T ss_pred CCCeEEecCcCCCcCCCCCCHHHHHHHHHHhh-------------cCCCCCCCcChHHHHHHHHHHHHhcCC--CCCChh
Confidence 457899999654 23 3334444333321 134699999999999999999976543 347899
Q ss_pred cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCce
Q 046900 122 RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (442)
+|++|+|+++++.+++.+|+++||.|++++|+|+.|...+.. .|++++.++++++++|.+|++++++++.+ ++
T Consensus 210 ~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~-~g~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~ 282 (517)
T PRK13355 210 DIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNL-AGGTAVHYRCDEQSEWYPDIDDIRSKITS------RT 282 (517)
T ss_pred HEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHH-CCCEEEEeecCcccCCCCCHHHHHHhcCc------Cc
Confidence 999999999999999999999999999999999999998885 89999999998888899999999998864 78
Q ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC
Q 046900 202 RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG 281 (442)
Q Consensus 202 ~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g 281 (442)
|+|+++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++.++.++ ..+++++||||.|+
T Consensus 283 k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~------~~vi~~~S~SK~~~ 356 (517)
T PRK13355 283 KAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPD------LFCVTFSGLSKSHM 356 (517)
T ss_pred eEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCC------CeEEEEecchhhcc
Confidence 999999999999999999999999999999999999999999999987667777776432 35788899999999
Q ss_pred CCCceeEEEeec-CHH----HHHHHHHcccc-CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Q 046900 282 LPGFRVGTIYSY-NDK----VVTTARRMSSF-TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-G 354 (442)
Q Consensus 282 ~~G~RiG~i~~~-~~~----~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 354 (442)
++|||+||++++ ++. +.+.+...... ..++.++|.++..+|.......+++.+.++ +.++|+++.+.|++. |
T Consensus 357 ~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~-~~~~r~~l~~~L~~~~g 435 (517)
T PRK13355 357 IAGYRIGWMILSGNKRIAKDYIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGR-VYEQRELVYNALNAIPG 435 (517)
T ss_pred CcccceEEEEeeCchhhHHHHHHHHHHHhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHH-HHHHHHHHHHHHhcCCC
Confidence 999999999963 232 23333332322 457789999999999764334566666544 456689999999987 8
Q ss_pred CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 355 IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 355 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
+++.+|+|+||+|++++.... ...++.+++..+++++||.|.||+.|+...++||||+|+. +++++++++++|++++
T Consensus 436 ~~~~~p~g~fy~~~~l~~~~~--~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~-~~~~l~~a~~rl~~~~ 512 (517)
T PRK13355 436 ISAVKPKAAFYIFPKIDVKKF--NIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLP-RLEDLEDAMDRLADFF 512 (517)
T ss_pred cccCCCCeeeEEEeecCcccC--CCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCC-CHHHHHHHHHHHHHHH
Confidence 999999999999999874210 0112456777777777999999999976667899999976 8999999999999999
Q ss_pred HHHH
Q 046900 435 QKRE 438 (442)
Q Consensus 435 ~~~~ 438 (442)
++++
T Consensus 513 ~~~~ 516 (517)
T PRK13355 513 SYYR 516 (517)
T ss_pred HHhh
Confidence 8654
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-54 Score=423.69 Aligned_cols=352 Identities=23% Similarity=0.404 Sum_probs=295.6
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEEE
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIVV 125 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~~ 125 (442)
.++|+|+.+.+.++ ++.+.+.+.+.... ...+|++..|.++||+++++|+++.++ ++++++ +|++
T Consensus 54 ~~~i~l~~G~P~~~~~~~~~~~~~~~~~~-----------~~~~Y~~~~G~~~Lr~aia~~~~~~~g--~~~~~~~~I~v 120 (413)
T PLN00175 54 HGAINLGQGFPNFDGPDFVKEAAIQAIRD-----------GKNQYARGFGVPELNSAIAERFKKDTG--LVVDPEKEVTV 120 (413)
T ss_pred CCeEecCCCCCCCCCCHHHHHHHHHHHhc-----------CCCCcCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCCEEE
Confidence 37899999987764 35555555543211 135799999999999999999998876 557887 7999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++.+++.+++++||.|++++|+|+.+...++. .|++++.+++++++ |.+|++.|++.+.. ++|+|+
T Consensus 121 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~-~g~~~~~v~~~~~~-~~~~~~~l~~~~~~------~~k~i~ 192 (413)
T PLN00175 121 TSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSM-AGAKIKTVTLRPPD-FAVPEDELKAAFTS------KTRAIL 192 (413)
T ss_pred eCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHH-cCCEEEEEECCccc-CCCCHHHHHHhcCc------CceEEE
Confidence 99999999999999999999999999999999999985 99999999997644 88999999998864 789999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++ .+.++.++... .+++|+++||||.|++||+
T Consensus 193 i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~s~~~~~~~-----~~~vi~i~SfSK~~~~~G~ 266 (413)
T PLN00175 193 INTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEG-DHISMASLPGM-----YERTVTMNSLGKTFSLTGW 266 (413)
T ss_pred ecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCC-cccChhhCCCC-----cCcEEEEecchhhccCcch
Confidence 99999999999999999999999999999999999999998865 34466655431 4789999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCce
Q 046900 286 RVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG 363 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 363 (442)
|+||++++ +.+.+.+..... .+.++++.|.++..+|++. +.|+++.++.|+++++.+.+.|++.|+.+..|+||
T Consensus 267 RiG~~v~~-~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~g~ 342 (413)
T PLN00175 267 KIGWAIAP-PHLTWGVRQAHSFLTFATATPMQWAAVAALRAP---ESYYEELKRDYSAKKDILVEGLKEVGFKVYPSSGT 342 (413)
T ss_pred heeeeEeC-HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCee
Confidence 99999995 556555554432 3677899999999999864 35788899999999999999999999999999999
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC---CCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS---EPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~---~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
+|+|++++... ..++.+++..|++++||.+.||+.|+.. ..+++||+++. +++++++++++|+++++
T Consensus 343 ~f~~~~~~~~~----~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~-~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 343 YFVMVDHTPFG----FENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCK-DEETLRAAVERMKTKLK 412 (413)
T ss_pred EEEEEeccccC----CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcC-CHHHHHHHHHHHHHHHh
Confidence 99999985311 0125788999988779999999999642 35799999997 89999999999998875
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-53 Score=427.04 Aligned_cols=349 Identities=21% Similarity=0.366 Sum_probs=283.6
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC-CCCeEEEcCCCCcChHHhHhhhcC
Q 046900 88 NALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD-PGDALLVPTPYYPGFDRDLRWRTG 166 (442)
Q Consensus 88 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~-~gd~Vl~~~p~y~~~~~~~~~~~G 166 (442)
...|++..|.++||++||+|+.+++| +++++++|++|+|+++++.+++.+|+. +||.|+++.|+|+.|...+.. .|
T Consensus 161 ~~~Y~~s~G~~~lReaIA~~~~~r~g--~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~-~g 237 (534)
T PLN02231 161 TGAYSHSQGIKGLRDAIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIAL-HG 237 (534)
T ss_pred ccCcCCCCCcHHHHHHHHHHHHhccC--CCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHH-cC
Confidence 46799999999999999999998766 568899999999999999999999984 799999999999999999985 99
Q ss_pred cEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 167 IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 167 ~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
+++++++++++++|.+|+++|++.+++...++.++|+++++|||||||.++|.+++++|+++|++|+++||+||+|.++.
T Consensus 238 ~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~ 317 (534)
T PLN02231 238 GTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENV 317 (534)
T ss_pred CEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcc
Confidence 99999999987789999999999998765555578999999999999999999999999999999999999999999999
Q ss_pred CC-CCCcccHHHHHhhhcCCC-CCcEEEEecCcccC-CCCCceeEEEeec--CHHHHHHHHHcccc-CCCcHHHHHHHHH
Q 046900 247 FS-SSEFVSIAEILEARQYKD-SERVHIVYSLSKDL-GLPGFRVGTIYSY--NDKVVTTARRMSSF-TLISSQTQYLLAS 320 (442)
Q Consensus 247 ~~-~~~~~s~~~~~~~~~~~~-~~~vi~~~S~SK~~-g~~G~RiG~i~~~--~~~~~~~~~~~~~~-~~~s~~~q~~~~~ 320 (442)
|+ +..+.++.++..+.+... ..++++++||||.+ |+||+|+||++++ ++.+.+.+.+.... ...+.+.|.++..
T Consensus 318 y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~~Q~~~~~ 397 (534)
T PLN02231 318 YVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASL 397 (534)
T ss_pred cCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Confidence 95 456778877754311111 13699999999975 8999999999873 56677666544433 3345678888888
Q ss_pred HhcCc----hhHHHH---HHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEEEEec--CCc-ccc---cChhhHHHHH
Q 046900 321 MLSNK----KFTENY---IKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNL--SPL-LEE---QTREGELALW 386 (442)
Q Consensus 321 ~l~~~----~~~~~~---~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~--~~~-~~~---~~~~~~~~l~ 386 (442)
+++.+ ..++++ ...+++.|+++++.+.+.|++. |+.+.+|+||||+|+++ +.. ... .....+..++
T Consensus 398 ~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~ 477 (534)
T PLN02231 398 VMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYC 477 (534)
T ss_pred HhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHH
Confidence 88642 122443 3456889999999999999987 89999999999999655 321 000 0001234567
Q ss_pred HHHHHcCcEEEeCCCCCCCC-CCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 387 DSMLHEVKLNISPGSSCHCS-EPGWFRVCFANMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 387 ~~l~~~~gi~v~pg~~f~~~-~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
..|++++||.+.||+.|+.. +..+||+++.. ++++++++++||++++++.-++
T Consensus 478 ~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~~-~~e~l~eal~RL~~~~~~~~~~ 531 (534)
T PLN02231 478 KRLLNATGIVVVPGSGFGQVPGTWHFRCTILP-QEDKIPAIVSRLTEFHKSFMDE 531 (534)
T ss_pred HHHHHhcCEEEeCCcccCCCCCCCeEEEEeCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999853 34579999986 8999999999999998876543
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-54 Score=421.94 Aligned_cols=352 Identities=22% Similarity=0.362 Sum_probs=291.2
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIV 124 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~ 124 (442)
+.++|+|+.+.+.++ ++.+.+.+...... .....|++..|.++||+++|+|+.+.+| .+++++ +|+
T Consensus 31 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~----------~~~~~Y~~~~g~~~lr~aia~~~~~~~g--~~~~~~~~i~ 98 (389)
T PRK08068 31 GHDVINLGQGNPDQPTPEHIVEALQEAAEN----------PANHKYSPFRGYPFLKEAAADFYKREYG--VTLDPETEVA 98 (389)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHHhC----------CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCccEE
Confidence 346899999976654 34455555443211 1245798889999999999999988776 557888 899
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++..++.+++++||.|++++|+|+.|...++. .|++++.+|++++++|.+|++++++.+.+ +++++
T Consensus 99 it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~-~g~~~~~i~~~~~~~~~~d~~~l~~~~~~------~~~~v 171 (389)
T PRK08068 99 ILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVAL-ARAQFETMPLIAENNFLPDYTKIPEEVAE------KAKLM 171 (389)
T ss_pred EcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHh-cCCEEEEeecccccCCCCCHHHHHHhccc------cceEE
Confidence 999999999999999999999999999999999999885 99999999998777899999999988764 78899
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++||||||||.++|.+++++|+++|++++++||+||+|.++.|++..+.++..... ..+++++++||||.||+||
T Consensus 172 ~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~-----~~~~~i~~~S~SK~~g~~G 246 (389)
T PRK08068 172 YLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPG-----AKDVGIELYTLSKTFNMAG 246 (389)
T ss_pred EEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCC-----ccCCEEEEecchhccCCcc
Confidence 99999999999999999999999999999999999999998887544445444322 1468899999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccccC--CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSFT--LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA 362 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 362 (442)
+|+||+++ ++.+.+.+.+....+ +.+++.|.++..++.+. .++++..++.++++|+.+.+.|++.|+.+.+|.|
T Consensus 247 lRiG~~~~-~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~~~~g 322 (389)
T PRK08068 247 WRVAFAVG-NESVIEAINLLQDHLFVSLFGAIQDAAIEALLSD---QSCVAELVARYESRRNAFISACREIGWEVDAPKG 322 (389)
T ss_pred ceeEeEec-CHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCe
Confidence 99999998 566776666554443 33456788887777643 2567888999999999999999999998888999
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~ 433 (442)
|+|+|++++... ++.++++.|++++||.|.||+.|+..+++++||+++. +++.+++++++|+++
T Consensus 323 ~~~~~v~~~~~~------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~ 386 (389)
T PRK08068 323 SFFAWMPVPKGY------TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLT-DEERLREAVERIGKL 386 (389)
T ss_pred eEEEEEECCCCC------CHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcC-CHHHHHHHHHHHHHh
Confidence 999999998643 2678999998767999999999976557899999987 788899999998764
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=420.26 Aligned_cols=367 Identities=22% Similarity=0.359 Sum_probs=299.5
Q ss_pred CCCCCCceeeeeccccc----c-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCc
Q 046900 43 ESTNPSGVIQMGLAENQ----V-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAK 117 (442)
Q Consensus 43 ~~~~~~~~i~l~~~~n~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~ 117 (442)
...++.++|+|+++++. + +++.+.+.+.+.... .....|++..|.++||+++++|+++.+| +.
T Consensus 26 ~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~----------~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~ 93 (409)
T PLN02656 26 DEENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQS----------NKFNGYAPTVGLPQARRAIAEYLSRDLP--YK 93 (409)
T ss_pred ccccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhc----------CCCCCCCCCCCCHHHHHHHHHHHHHhcC--CC
Confidence 44567899999999885 3 345555555443211 1245798889999999999999998766 45
Q ss_pred cCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhc
Q 046900 118 FDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESK 197 (442)
Q Consensus 118 ~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 197 (442)
+++++|++|+|+++++.+++.+++++||.|++++|+|+.+...+.. .|++++.++++++++|.+|++.+++.+++
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~i~~~~~~~~~~d~~~l~~~~~~---- 168 (409)
T PLN02656 94 LSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAF-RHLEVRYVDLLPEKGWEVDLDAVEALADQ---- 168 (409)
T ss_pred CCcccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHH-cCCEEEEEeCCCcCCCCCCHHHHHHHhcc----
Confidence 7899999999999999999999999999999999999999888874 89999999997666789999999988764
Q ss_pred CCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCc
Q 046900 198 DMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLS 277 (442)
Q Consensus 198 ~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~S 277 (442)
+++++++++||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++..+.. ..++|+++|||
T Consensus 169 --~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~------~~~vi~~~SfS 240 (409)
T PLN02656 169 --NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGS------IVPVLTLGSLS 240 (409)
T ss_pred --CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcc------cCcEEEEcccc
Confidence 6789999999999999999999999999999999999999999999997765556655533 36899999999
Q ss_pred ccCCCCCceeEEEeecC-------HHHHHHHHHcccc-CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH
Q 046900 278 KDLGLPGFRVGTIYSYN-------DKVVTTARRMSSF-TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEG 349 (442)
Q Consensus 278 K~~g~~G~RiG~i~~~~-------~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (442)
|.|++||+|+||+++++ +.+.+.+.+.... ..++.+.|.++..++++.. +.++++.++.++++|+.+.+.
T Consensus 241 K~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~ 318 (409)
T PLN02656 241 KRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTD--ESFFKKTINILKQSSDICCDR 318 (409)
T ss_pred hhccCcceeEEEEEEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999853 4566666554333 4568899999999997532 457888899999999999999
Q ss_pred HHhC-CCe-eecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHH
Q 046900 350 LRSA-GIE-CLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVAL 427 (442)
Q Consensus 350 L~~~-g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l 427 (442)
|++. ++. +..|+||+|+|++++..... ...++.+++..+++++||.+.||+.|+. ++|+||+++. +++++++++
T Consensus 319 L~~~~~~~~~~~p~gg~~~w~~l~~~~~~-~~~~~~~~~~~~l~~~gV~v~pg~~fg~--~~~iRi~~~~-~~e~l~eal 394 (409)
T PLN02656 319 IKEIPCITCPHKPEGSMAVMVKLNLSLLE-DISDDIDFCFKLAREESVIILPGTAVGL--KNWLRITFAA-DPSSLEEAL 394 (409)
T ss_pred HhhCCCCcCCcCCCeEEEEEEecchhhcC-CCCCHHHHHHHHHHhCCEEEecchhcCC--CCeEEEEeCC-CHHHHHHHH
Confidence 9886 333 35789999999998742100 0012445666666777999999999963 6899999997 899999999
Q ss_pred HHHHHHHHHHHhh
Q 046900 428 KRIHNFMQKRERR 440 (442)
Q Consensus 428 ~~l~~~l~~~~~~ 440 (442)
++|++++.+++..
T Consensus 395 ~rl~~~~~~~~~~ 407 (409)
T PLN02656 395 GRIKSFYLRHSKT 407 (409)
T ss_pred HHHHHHHHHhccc
Confidence 9999999887654
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=419.99 Aligned_cols=376 Identities=19% Similarity=0.350 Sum_probs=296.7
Q ss_pred hhhhhhcCCCCCCCCCCceeeeeccccc----c-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHH
Q 046900 32 GWKAYDENPYEESTNPSGVIQMGLAENQ----V-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMAS 106 (442)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~i~l~~~~n~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 106 (442)
+|.....+.+.. ...+++|+|+.+++. + +++.+.+.+.+.... ....+|++..|.++||++||+
T Consensus 17 ~~~~~~~~~~~~-~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~----------~~~~~Y~~~~G~~~lr~aia~ 85 (409)
T PLN00143 17 DAVKFLKENFNE-DDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRS----------AKFNSYAPTGGILPARRAIAD 85 (409)
T ss_pred HHHHHHHHhccc-CCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhC----------cCCCCCCCCCCCHHHHHHHHH
Confidence 444433443333 335689999999885 4 345565555543321 123569888999999999999
Q ss_pred HHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHH
Q 046900 107 FMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQA 186 (442)
Q Consensus 107 ~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~ 186 (442)
|+.+.+| +.+++++|++|+|+++++.+++.+++++||.|++++|+|+.|...+.. .|++++.++++++++|.+|++.
T Consensus 86 ~~~~~~g--~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~~~ 162 (409)
T PLN00143 86 YLSNDLP--YQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIF-HHLEIRHFDLLPEKGWEVDLDA 162 (409)
T ss_pred HHHhhcC--CCCCHhhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHH-cCCEEEEEeccCCCCCcCCHHH
Confidence 9998766 557899999999999999999999999999999999999999998885 9999999998766689999999
Q ss_pred HHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCC
Q 046900 187 LEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKD 266 (442)
Q Consensus 187 l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~ 266 (442)
|++++++ ++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++..+..
T Consensus 163 l~~~~~~------~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~------ 230 (409)
T PLN00143 163 VEAIADE------NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFAS------ 230 (409)
T ss_pred HHHhccc------CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcc------
Confidence 9988754 6789999999999999999999999999999999999999999999987655555555433
Q ss_pred CCcEEEEecCcccCCCCCceeEEEeec-CHHH------HHHHHHccc-cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 046900 267 SERVHIVYSLSKDLGLPGFRVGTIYSY-NDKV------VTTARRMSS-FTLISSQTQYLLASMLSNKKFTENYIKTNRER 338 (442)
Q Consensus 267 ~~~vi~~~S~SK~~g~~G~RiG~i~~~-~~~~------~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 338 (442)
.+++|+++||||.|++||+|+||++++ ++.+ .+.+.+... ....+.++|.++.+++.+.. ..++++.++.
T Consensus 231 ~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~--~~~~~~~~~~ 308 (409)
T PLN00143 231 IVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTT--EDFFSKTINI 308 (409)
T ss_pred cCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcCh--HHHHHHHHHH
Confidence 368999999999999999999999984 3322 222333322 22357799999999997532 3467777888
Q ss_pred HHHHHHHHHHHHHhCCC-ee-ecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee
Q 046900 339 LQKRYQMIIEGLRSAGI-EC-LKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA 416 (442)
Q Consensus 339 ~~~~~~~l~~~L~~~g~-~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~ 416 (442)
++++++.+.+.|.+.+. .+ ..|+||+|+|++++.... ....++.+++..+++++||.+.||+.|+ .++|+||+++
T Consensus 309 ~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~-~~~~~~~~~~~~ll~~~gV~v~pg~~f~--~~~~iRi~~~ 385 (409)
T PLN00143 309 LRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLL-EDIEDDMEFCLKLAKEESLIILPGVTVG--LKNWLRITFA 385 (409)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchhhc-CCCCCHHHHHHHHHHhCCEEEeCccccC--CCCeEEEEEc
Confidence 88889999999987643 32 368899999999975210 0111256777777777799999999995 3689999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 417 NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 417 ~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
. +++++++++++|+++++++.+
T Consensus 386 ~-~~~~l~~al~rl~~~l~~~~~ 407 (409)
T PLN00143 386 V-EQSSLEDGLGRLKSFCGRHAK 407 (409)
T ss_pred C-CHHHHHHHHHHHHHHHHHhcc
Confidence 7 799999999999999987754
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-53 Score=419.96 Aligned_cols=361 Identities=20% Similarity=0.374 Sum_probs=292.7
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIV 124 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~ 124 (442)
+.++|+|+.++++++ ++.+.+.+...... .....|+++.|.++||+++|+|+++++| +.++++ +|+
T Consensus 29 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~I~ 96 (405)
T PRK09148 29 GADIIDLGMGNPDLPTPQHIVDKLCETAQD----------PRTHRYSASKGIPGLRRAQAAYYARRFG--VKLNPDTQVV 96 (405)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHcC----------cccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 457899999987654 23333333332111 1246799999999999999999998776 456787 899
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++.+++.+++++||+|++++|+|+.+...+.. .|++++.++++.++.|. +.+++.++.. ..+++++
T Consensus 97 it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~-~g~~v~~v~~~~~~~~~---~~l~~~~~~~---~~~~~~v 169 (405)
T PRK09148 97 ATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIM-AGGVIRSVPAEPDEEFF---PALERAVRHS---IPKPIAL 169 (405)
T ss_pred EcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHh-cCCEEEEEeCCCCCCCc---cCHHHHHhhc---cccceEE
Confidence 999999999999999999999999999999999888884 89999999997666554 3444444321 1377899
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
+++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++..+.++..+... .+++++++||||.||+||
T Consensus 170 ~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~-----~~~~i~~~SfSK~~~~pG 244 (405)
T PRK09148 170 IVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGA-----KDVTVEFTSMSKTFSMAG 244 (405)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCc-----cCcEEEEeccccccCCcc
Confidence 999999999999999999999999999999999999999998876555566654321 367889999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc
Q 046900 285 FRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA 362 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 362 (442)
+|+||+++ ++.+.+.+.+... .+.+++++|.++..++.+. ++++++.++.++++++.+.+.|++.|+.+..|++
T Consensus 245 lR~G~~v~-~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~---~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~ 320 (405)
T PRK09148 245 WRMGFAVG-NERLIAALTRVKSYLDYGAFTPIQVAATAALNGP---QDCIAEMRELYKKRRDVLVESFGRAGWDIPPPAA 320 (405)
T ss_pred hheeeeeC-CHHHHHHHHHHHHHhccCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCe
Confidence 99999998 5667777665544 3566889999999999753 4578889999999999999999998888778999
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
|+|+|++++...... +..+++..+++++||.|.||..|+...++|+||+++. +.+++++++++|.+++.++..
T Consensus 321 g~f~~~~l~~~~~~~---~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~-~~~~l~~al~~l~~~l~~~~~ 393 (405)
T PRK09148 321 SMFAWAPIPEAFRHL---GSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVE-NEQRIRQAARNIKRFLSSADE 393 (405)
T ss_pred eEEEEEECCCccCCC---CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHHHH
Confidence 999999998642211 2568888888767999999999975556899999986 899999999999999987653
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-53 Score=417.64 Aligned_cols=348 Identities=22% Similarity=0.424 Sum_probs=291.9
Q ss_pred CceeeeecccccccH-H-HHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 48 SGVIQMGLAENQVSF-D-LLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
.++|+|+.+++.+++ + .++..+.... .....|+++.|.++||+++|+|+.+.++ +.+++++|++
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~~~i~i 94 (384)
T PRK06348 29 PDIIDLSLGDPDLITDESIINAAFEDAK------------KGHTRYTDSGGDVELIEEIIKYYSKNYD--LSFKRNEIMA 94 (384)
T ss_pred CCcEEcCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCChhhEEE
Confidence 367999999887643 3 3333333221 1246799999999999999999988776 5578999999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++.+++.+++++||.|++++|+|+.+...+.. .|++++.++++++++|.+|++.|++.+++ ++++++
T Consensus 95 t~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~v~ 167 (384)
T PRK06348 95 TVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEM-VGGKPIILETYEEDGFQINVKKLEALITS------KTKAII 167 (384)
T ss_pred cCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHH-cCCEEEEecCCcCcCCcCCHHHHHHhhCc------CccEEE
Confidence 99999999999999999999999999999999999985 89999999986666789999999998864 778999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++||||||.++|.+++++|+++|++++++||+||+|.++.+++ .+.++.++.. ..+++++++||||.+|+||+
T Consensus 168 l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~-----~~~~vi~~~SfSK~~~l~Gl 241 (384)
T PRK06348 168 LNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE-DFVPMATLAG-----MPERTITFGSFSKDFAMTGW 241 (384)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC-CccchhhcCC-----CcCcEEEEecchhccCCccc
Confidence 99999999999999999999999999999999999999998865 3445555532 14789999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCc
Q 046900 286 RVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNA 362 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 362 (442)
|+||++++ +.+.+.+..... .+.++++.|.++..++... ++++++.++.++++++.+.+.|++. ++.+..|+|
T Consensus 242 RiG~~v~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~g 317 (384)
T PRK06348 242 RIGYVIAP-DYIIETAKIINEGICFSAPTISQRAAIYALKHR---DTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKG 317 (384)
T ss_pred cceeeecC-HHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCe
Confidence 99999994 666666655443 3567889999999998753 5577888999999999999999886 778888999
Q ss_pred eEEEEEecCC-cccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSP-LLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 363 g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~ 433 (442)
|||+|++++. .. ++.++++.+++++||.+.||+.|+..+.+++||+++. +++++++++++|+++
T Consensus 318 g~~~~~~~~~~~~------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~ 382 (384)
T PRK06348 318 SIYAFINIKKTGL------SSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTV-GIEVLEEAFNRIEKM 382 (384)
T ss_pred eEEEEEecccCCC------CHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecC-CHHHHHHHHHHHHhh
Confidence 9999999974 22 2678888888777999999999976556899999986 899999999999764
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=420.93 Aligned_cols=364 Identities=22% Similarity=0.381 Sum_probs=297.7
Q ss_pred CCceeeeeccccc----cc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 47 PSGVIQMGLAENQ----VS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 47 ~~~~i~l~~~~n~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
..++|+|+.+++. ++ ++.+.+.+.+.... .....|++..|.+++|+++|+|+++.++ .+++++
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~----------~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~~ 118 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRS----------GKYNSYSTCVGLLPARRAIAEYLSRDLP--YELSTD 118 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHc----------CcCCCCCCCccCHHHHHHHHHHHhhccC--CCCChh
Confidence 4579999999874 22 24444444433211 1234799989999999999999988766 457899
Q ss_pred cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCce
Q 046900 122 RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (442)
+|++|+|+++++.+++.+|+++||+|+++.|+|+.|...+.. .|++++.+++.++.+|.+|++.+++.+++ ++
T Consensus 119 ~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~-~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~ 191 (430)
T PLN00145 119 DIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVF-SGLEVRHFDLLPERGWEVDLEGVEALADE------NT 191 (430)
T ss_pred hEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHH-cCCEEEEeeCCcccCCcCCHHHHHHHhCc------Cc
Confidence 999999999999999999999999999999999999888884 89999999987777899999999988765 78
Q ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC
Q 046900 202 RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG 281 (442)
Q Consensus 202 ~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g 281 (442)
++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++..+.. ..+||+++||||.|+
T Consensus 192 ~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~------~~~vi~~~S~SK~~~ 265 (430)
T PLN00145 192 VAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGE------VAPVLTLGSISKRWV 265 (430)
T ss_pred eEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcc------cCcEEEEeccccccC
Confidence 89999999999999999999999999999999999999999999987766667665543 368999999999999
Q ss_pred CCCceeEEEeec-CHHHH------HHHHHccccC-CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 282 LPGFRVGTIYSY-NDKVV------TTARRMSSFT-LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 282 ~~G~RiG~i~~~-~~~~~------~~~~~~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
+||||+||++++ ++.+. ..++.....+ ..+++.|.++..+|.... +.+++++++.++++++.+.+.|++.
T Consensus 266 ~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~ 343 (430)
T PLN00145 266 VPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTK--EEFFTKTLGLLKETADICYEKIKEI 343 (430)
T ss_pred CCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999973 23222 2333333332 357899999999998632 5678889999999999999999886
Q ss_pred -CCee-ecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHH
Q 046900 354 -GIEC-LKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIH 431 (442)
Q Consensus 354 -g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~ 431 (442)
|+.+ ..|+|++|+|++++.... ....++.+++.+|++++||.+.||+.|+. ++|+||+|+. +.+++++++++|+
T Consensus 344 ~g~~~~~~P~ga~y~~v~l~~~~~-~~~~~~~~~~~~ll~~~gV~v~pG~~fg~--~~~lRis~~~-~~~~l~~al~rl~ 419 (430)
T PLN00145 344 KCITCPHKPEGSMFVMVKLDLSCL-SGIKDDMDFCCKLAKEESVVVLPGSALGM--KNWLRITFAI-DPPSLEDGLERLK 419 (430)
T ss_pred CCCCCCcCCCeeeEEEeccChhhc-CCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCC-CHHHHHHHHHHHH
Confidence 7775 479999999999874210 00113567888888888999999999974 6899999997 8999999999999
Q ss_pred HHHHHHHhhc
Q 046900 432 NFMQKRERRR 441 (442)
Q Consensus 432 ~~l~~~~~~~ 441 (442)
+++.++++..
T Consensus 420 ~~~~~~~~~~ 429 (430)
T PLN00145 420 SFCLRHAKLA 429 (430)
T ss_pred HHHHHhcccc
Confidence 9999988764
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=417.89 Aligned_cols=351 Identities=23% Similarity=0.402 Sum_probs=292.7
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIV 124 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~ 124 (442)
..++++|+.+++.++ ++.+.+.+.+.... ....+|+++.|.++||+++|+|+++.++ ++++++ +|+
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~~~~vi 95 (383)
T TIGR03540 28 GVDVISLGIGDPDLPTPKHIVEALCKAAEN----------PENHRYPSYEGMLAYRQAVADWYKRRFG--VELDPETEVL 95 (383)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhC----------CCCCCCCCCCCCHHHHHHHHHHHHHhhC--CCCCCCCeEE
Confidence 347899999988764 34444444433211 1246799999999999999999998766 446676 699
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++..++.+++++||.|++++|+|+.+...++. .|++++.+|++++++|.+|++++++.+.+ +++++
T Consensus 96 ~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~-~G~~v~~v~~~~~~g~~~d~~~l~~~~~~------~~~~v 168 (383)
T TIGR03540 96 SLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLF-AGGEPYEMPLKEENGFLPDFDAIPEDIAK------KAKLM 168 (383)
T ss_pred ECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHHh-cCCEEEEEecCcccCCccCHHHHHhhccc------cceEE
Confidence 999999999999999999999999999999999998884 99999999998777888999999988764 78999
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
+++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++.+++.. .+++++++||||.||++|
T Consensus 169 ~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~-----~~~~i~~~SfSK~~g~~G 243 (383)
T TIGR03540 169 FINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGA-----KDVGIEFHSLSKTYNMTG 243 (383)
T ss_pred EEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCc-----ccCEEEEEecccccCCcc
Confidence 999999999999999999999999999999999999999998876555565555321 367899999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA 362 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 362 (442)
+|+||+++ ++.+.+.+...... ...+.+.|.++..++.+. .+|+++.++.++++++.+.+.|++.|+.+..+++
T Consensus 244 lRiG~~i~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 319 (383)
T TIGR03540 244 WRIGMAVG-NADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP---QDVVKEIRKIYQRRRDLLLEALKKIGIDVEKPKA 319 (383)
T ss_pred ceeeEEeC-CHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCCc
Confidence 99999998 45666665544332 456778999999999764 4578888999999999999999999999888999
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHN 432 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~ 432 (442)
|+|+|++++... +..+++.++++++||.+.||+.|+...++++||+++. +++++++++++|++
T Consensus 320 ~~~~~~~l~~~~------~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 320 TFYVWVPVPEGY------TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTV-PDERLEEAVARIKK 382 (383)
T ss_pred ceEEEEECCCCC------CHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecC-CHHHHHHHHHHHhh
Confidence 999999998643 2578888888777999999999975556899999986 78899999998875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-53 Score=417.41 Aligned_cols=351 Identities=23% Similarity=0.393 Sum_probs=293.0
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIV 124 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~ 124 (442)
..++|+|+.++++++ ++.+.+.+.+.... .....|+++.|+++||+++|+|+++.+| ..++++ +|+
T Consensus 30 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~ii 97 (385)
T PRK09276 30 GVDVISLGIGDPDLPTPDHIIEAMCKAVED----------PENHQYPSYEGMLEFRKAVADWYKRRFG--VELDPETEVI 97 (385)
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHhC----------CCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 346799999988764 45556555543211 1235799999999999999999998766 456776 599
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++..++.+++++||.|++++|+|+.|...++. .|++++.+|++.+++|.+|++.+++.+.+ ++++|
T Consensus 98 ~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~-~g~~~~~v~~~~~~g~~~d~~~l~~~~~~------~~~~v 170 (385)
T PRK09276 98 SLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIF-AGGEPYFMPLKEENGFLPDLDAIPEDVAK------KAKLM 170 (385)
T ss_pred EccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHH-cCCEEEEEecCCCCCCcCCHHHHHHhccc------cceEE
Confidence 999999999999999999999999999999999998884 99999999998766788999999887754 78999
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
+++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++..+.++.++... .+++|+++||||.||++|
T Consensus 171 ~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-----~~~~i~~~S~SK~~g~~G 245 (385)
T PRK09276 171 FINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGA-----KDVGIEFHSLSKTYNMTG 245 (385)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCC-----cCCEEEEecchhhcCCcc
Confidence 999999999999999999999999999999999999999998876555666655321 367899999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA 362 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 362 (442)
+|+||+++ ++.+.+.+.+.... ..++.+.|.++..++.+. ++|+++.++.++++++.+.+.|++.|+++..|++
T Consensus 246 lRiG~~i~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 321 (385)
T PRK09276 246 WRIGFAVG-NADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGP---QEVVEELRKIYQERRDILVEGLRKLGLEVEPPKA 321 (385)
T ss_pred hhheeeeC-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCc---HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc
Confidence 99999998 45666666554332 345678899999988752 5678888999999999999999998988888999
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHN 432 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~ 432 (442)
|+|+|++++... +..+++++|++++||.+.||..|+...++++||+++. +++++.+++++|.+
T Consensus 322 ~~~~~v~~~~~~------~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~ 384 (385)
T PRK09276 322 TFYVWAPVPKGY------TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTV-PDERIEEAVERIKK 384 (385)
T ss_pred ceEEEEECCCCC------CHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCC-CHHHHHHHHHHHhh
Confidence 999999998643 2678888988777999999999976556899999986 88899999999864
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-53 Score=418.21 Aligned_cols=365 Identities=20% Similarity=0.387 Sum_probs=300.8
Q ss_pred CCCCceeeeeccccc-----ccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhC----CC
Q 046900 45 TNPSGVIQMGLAENQ-----VSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRG----GR 115 (442)
Q Consensus 45 ~~~~~~i~l~~~~n~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~----~~ 115 (442)
.++.++|+|+.+.+. .+++.+.+.+.+.... ....+|+++.|.++||++||+|+++.++ .+
T Consensus 30 ~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~----------~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~ 99 (412)
T PTZ00433 30 PSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDS----------QECNGYPPTVGSPEAREAVATYWRNSFVHKESLK 99 (412)
T ss_pred CCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhc----------CCCCCCCCCCCcHHHHHHHHHHHHhhcccccccc
Confidence 356789999998864 3556666666554321 1246799999999999999999987643 13
Q ss_pred CccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHH
Q 046900 116 AKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAE 195 (442)
Q Consensus 116 ~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~ 195 (442)
..+++++|++|+|+++++.+++.+++++||.|+++.|+|+.+...++. .|++++.++++++.+|.+|++++++.+++
T Consensus 100 ~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~-~g~~~~~i~~~~~~~~~~d~~~l~~~~~~-- 176 (412)
T PTZ00433 100 STIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKA-YGIEMRFYNCRPEKDWEADLDEIRRLVDD-- 176 (412)
T ss_pred CCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHH-cCCEEEEEecCccccCcCCHHHHHHHhcc--
Confidence 457899999999999999999999999999999999999999999885 99999999998766789999999988764
Q ss_pred hcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEec
Q 046900 196 SKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275 (442)
Q Consensus 196 ~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S 275 (442)
++++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++..+.. ..++++++|
T Consensus 177 ----~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~------~~~~i~~~S 246 (412)
T PTZ00433 177 ----RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDT------TVPRVILGG 246 (412)
T ss_pred ----CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccC------CCceEEEcc
Confidence 7889999999999999999999999999999999999999999999987655556666643 246889999
Q ss_pred CcccCCCCCceeEEEeec-----CHHHHHHHHHccc-cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH
Q 046900 276 LSKDLGLPGFRVGTIYSY-----NDKVVTTARRMSS-FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEG 349 (442)
Q Consensus 276 ~SK~~g~~G~RiG~i~~~-----~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (442)
|||.||+||+|+||++++ .+.+.+.+++... .+.++++.|.++..++.+. .+.|+++.++.++++++.+.+.
T Consensus 247 fSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~r~~l~~~ 324 (412)
T PTZ00433 247 TAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALLNT--PQEHLEQIVAKLEEGAMVLYNH 324 (412)
T ss_pred chhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccCCCChHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999972 1345555555433 3568999999999998763 2567888999999999999999
Q ss_pred HHhC-CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHH
Q 046900 350 LRSA-GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALK 428 (442)
Q Consensus 350 L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~ 428 (442)
|++. |+.+..|++|+|+|++++...- ....++.++++.|++++||.+.||+.|+. ++|+||+++. ++++++++++
T Consensus 325 L~~~~~~~~~~p~gg~f~~~~l~~~~~-~~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRis~~~-~~e~l~~al~ 400 (412)
T PTZ00433 325 IGECIGLSPTMPRGSMFLMSRLDLEKF-RDIKSDVEFYEKLLEEENVQVLPGEIFHM--PGFTRLTISR-PVEVLREAVE 400 (412)
T ss_pred HhcCCCCcccCCCeeEEEEEEechhhc-CCCCCHHHHHHHHHHhcCEEEeCccccCC--CCeEEEEecC-CHHHHHHHHH
Confidence 9885 7888889999999999874100 00012568889998766999999999964 6799999997 7889999999
Q ss_pred HHHHHHHHHH
Q 046900 429 RIHNFMQKRE 438 (442)
Q Consensus 429 ~l~~~l~~~~ 438 (442)
+|.+++++++
T Consensus 401 ~l~~~~~~~~ 410 (412)
T PTZ00433 401 RIKAFCERHK 410 (412)
T ss_pred HHHHHHHHhc
Confidence 9999998765
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=416.73 Aligned_cols=354 Identities=24% Similarity=0.427 Sum_probs=294.6
Q ss_pred CceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEEE
Q 046900 48 SGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIVV 125 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~~ 125 (442)
.++|+|+.++++++. +.+.+.+.+... .....|++..|.++||+++|+|+++.+| +.++++ +|++
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~~i~~ 86 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLE-----------QGYTSYTANAGLLELRQEIAKYLKKRFA--VSYDPNDEIIV 86 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHh-----------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEEE
Confidence 478999999987743 333444333221 1235698889999999999999998876 456775 7999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++.+++.+++++||.|++++|+|+.+...++. .|.+++.++++.+++|.+|++++++++.+ ++++++
T Consensus 87 t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~v~ 159 (378)
T PRK07682 87 TVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTL-AGGVPVPVATTLENEFKVQPAQIEAAITA------KTKAIL 159 (378)
T ss_pred eCChHHHHHHHHHHhCCCCCEEEEeCCCchhhHHHHHH-cCCEEEEeecCCccCCCCCHHHHHhhcCc------ccEEEE
Confidence 99999999999999999999999999999999998885 89999999987666788999999998864 788999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
++|||||||.++|.+++++|+++|++|+++||+||+|.++.+++. +.++..+.. ..+++++++||||.||+||+
T Consensus 160 ~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~-----~~~~~i~~~S~SK~~~~~Gl 233 (378)
T PRK07682 160 LCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKG-----MRERTILISGFSKGFAMTGW 233 (378)
T ss_pred EECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhccc-----ccCCEEEEecCcccccChhh
Confidence 999999999999999999999999999999999999999998753 445555432 13689999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCce
Q 046900 286 RVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG 363 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 363 (442)
|+||+++ ++.+.+.+..... .+.++++.|.++..+|++.. .++++.++.++++++.+.+.|++.|+++..|+||
T Consensus 234 R~G~~~~-~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~g~ 309 (378)
T PRK07682 234 RLGFIAA-PVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGN---DDVIRMRDSYRKRRNFFVTSFNEIGLTCHVPGGA 309 (378)
T ss_pred hhhhhhc-CHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHHHHCCCccCCCCee
Confidence 9999999 4566666654332 25578899999999998653 3577889999999999999999999998899999
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+|+|+.++.... ++.++++.+++++||.+.||..|+...++++|||++. +++++++++++|++++++.
T Consensus 310 ~~~~~~~~~~~~-----~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 310 FYAFPSISSTGL-----SSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT-SLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred EEEEEeccCCCC-----CHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHHHhhc
Confidence 999998853211 2568888888666999999999976557899999998 8899999999999998753
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-53 Score=414.56 Aligned_cols=353 Identities=20% Similarity=0.330 Sum_probs=288.0
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIV 124 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~ 124 (442)
..++|+|+.++++++ ++.+.+.+.+... ....|+++.|.++||+++|+|+++.++....++++ +|+
T Consensus 27 ~~~~i~l~~~~p~~~~~~~~~~a~~~~~~------------~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~ 94 (393)
T TIGR03538 27 SKPPIALSIGEPKHPTPAFVLEALRENLH------------GLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVL 94 (393)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHhh------------ccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEE
Confidence 357799999998874 4666666665421 24679999999999999999999887643236785 899
Q ss_pred EecChHHHHHHHHHhhcCCCCe--EEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCcee
Q 046900 125 VTAGATAANELLTFILADPGDA--LLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVR 202 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~--Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 202 (442)
+|+|+++++.+++++++++||. |++++|+|+.|...++. .|++++.++++++++|.+|++++++.+.+ ++|
T Consensus 95 it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k 167 (393)
T TIGR03538 95 PVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALL-AGAEPYFLNCTAENGFLPDFDAVPESVWR------RCQ 167 (393)
T ss_pred ECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHh-cCCeEEEeeccccCCCCCCHHHHHHHHhh------cce
Confidence 9999999999999999999986 99999999999998884 99999999998777899999999988865 789
Q ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC-CcccHHHHHhhhcCCCCCcEEEEecCcccCC
Q 046900 203 GVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS-EFVSIAEILEARQYKDSERVHIVYSLSKDLG 281 (442)
Q Consensus 203 ~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g 281 (442)
+++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++. .+.+........+.+..+++|+++||||.|+
T Consensus 168 ~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~ 247 (393)
T TIGR03538 168 LLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSN 247 (393)
T ss_pred EEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcC
Confidence 999999999999999999999999999999999999999999887642 2333322211110012478999999999999
Q ss_pred CCCceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 046900 282 LPGFRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK 359 (442)
Q Consensus 282 ~~G~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 359 (442)
+||+|+||++++ +.+.+.+.+... .+.++++.|.++.+.+.. ++++++.++.++++++.+.+.|++. +.+..
T Consensus 248 ~~GlRvG~~i~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~ 321 (393)
T TIGR03538 248 LPGLRSGFVAGD-AEILKAFLRYRTYHGCAMPIPTQLASIAAWND----EQHVRENRALYREKFAAVLEILGQV-LDLEL 321 (393)
T ss_pred CcccceEEEecC-HHHHHHHHHHHHhhccCcCHHHHHHHHHHhcC----hHHHHHHHHHHHHHHHHHHHHHHhh-CcccC
Confidence 999999999995 556655554443 245688899998877754 3467888999999999999999875 56677
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC------CCCCEEEEEeecCCHHHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC------SEPGWFRVCFANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~------~~~~~iRls~~~~~~e~i~~~l~~l~~~ 433 (442)
|.+|+|+|++++. ++.++++.+++++||.|.||+.|+. .+.+++||+++. +++++++++++|+++
T Consensus 322 p~gg~f~~~~~~~--------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 322 PDAGFYLWPKVPG--------DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA-PLEECVEAAERIRSF 392 (393)
T ss_pred CCeeEEEEEECCC--------CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC-CHHHHHHHHHHHHHh
Confidence 9999999999982 2567888888777999999999852 235799999997 789999999999875
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=412.52 Aligned_cols=351 Identities=24% Similarity=0.388 Sum_probs=290.2
Q ss_pred CCceeeeecccccccH--HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cE
Q 046900 47 PSGVIQMGLAENQVSF--DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RI 123 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i 123 (442)
..++|+|+.+.+..+. +.++........ .....|+++.|.++||+++|+|++++++ .+++++ +|
T Consensus 34 g~~~i~l~~g~p~~~~p~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~~~~i 100 (394)
T PRK05942 34 GLDLIDLGMGNPDGAAPQPVIEAAIAALAD-----------PQNHGYPPFEGTASFRQAITDWYHRRYG--VELDPDSEA 100 (394)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhC-----------CCCccCCCCCCCHHHHHHHHHHHHHHHC--CCcCCCCeE
Confidence 3468999987654432 234433333211 1246799999999999999999998776 457787 59
Q ss_pred EEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 124 VVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 124 ~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
++|+|+++++..++.+++++||+|++++|+|+.+...+.. .|++++.++++.+++|.+|++++++.+.+ ++|+
T Consensus 101 ~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~ 173 (394)
T PRK05942 101 LPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLI-AGAQIYPIILKPENDWLIDLSSIPEEVAQ------QAKI 173 (394)
T ss_pred EEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHH-cCCEEEEeecCCccCCccCHHHHHHhccc------cceE
Confidence 9999999999999999999999999999999999888874 89999999998777899999999988864 7899
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
++++|||||||.++|.+++++|+++|++++++||+||+|.++.+++....++.++... .+++++++||||.||+|
T Consensus 174 i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~-----~~~~i~~~SfSK~~~~~ 248 (394)
T PRK05942 174 LYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGA-----KDIGVEFHTLSKTYNMA 248 (394)
T ss_pred EEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCc-----cccEEEEecchhccCCh
Confidence 9999999999999999999999999999999999999999998876555566555321 35678899999999999
Q ss_pred CceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC
Q 046900 284 GFRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN 361 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 361 (442)
|+|+||+++ ++.+.+.++.... .+.+++++|.++..+++. .++++++.++.++++++++.+.|++.|+.+.+++
T Consensus 249 GlRiG~i~~-~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 324 (394)
T PRK05942 249 GWRVGFVVG-NRHIIQGLRTLKTNLDYGIFSALQKAAETALQL---PDSYLQQVQERYRTRRDFLIQGLGELGWNIPPTK 324 (394)
T ss_pred hhheeeeec-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC
Confidence 999999998 5667777665443 355778899999999964 2567888999999999999999998898888899
Q ss_pred ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHH
Q 046900 362 AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 362 ~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~ 433 (442)
+|+|+|++++.... +.+++.++++++||.+.||+.|+...++|+||+++. +.+.+.+++++|.++
T Consensus 325 ~~~f~~~~~~~~~~------~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 325 ATMYLWVPCPVGMG------STDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA-DCDRLGEALDRLKQA 389 (394)
T ss_pred eeeEEEEECCCCCC------HHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHHh
Confidence 99999999986432 456777777777999999999975557899999986 788899999988764
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-53 Score=416.62 Aligned_cols=351 Identities=23% Similarity=0.310 Sum_probs=281.9
Q ss_pred CCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
..++|+|+.+++++++ +.+.+.+.+...... .......|++..|.++||+++|+|+.+.+| +++++++|++
T Consensus 33 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~i 104 (409)
T PRK07590 33 EAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMG------TAETFRGYGPEQGYDFLREKIAENDYQARG--CDISADEIFI 104 (409)
T ss_pred CCceEEecCcCCCCCCCHHHHHHHHHHHhccc------ccCCccCCCCCCCCHHHHHHHHHHHHHhcC--CcCChhhEEE
Confidence 4578999999988643 444444443321100 001346798889999999999999987766 5688999999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcE-----------EEEEecCCCCCCcCCHHHHHHHHHHH
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIK-----------IVPIHCDSSNNFQITPQALEAAYKEA 194 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~-----------v~~v~~~~~~~~~~d~~~l~~~l~~~ 194 (442)
|+|+++++.++. .++++||+|++++|+|+.|...++. .|.+ +++++++++++|.+|.+.
T Consensus 105 t~Ga~~al~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~~-~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~-------- 174 (409)
T PRK07590 105 SDGAKCDTGNIL-DIFGPDNTIAVTDPVYPVYVDTNVM-AGRTGEANEDGRYSGIVYLPCTAENNFVPELPE-------- 174 (409)
T ss_pred CCCHHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHH-cCCcccccccccccceeEeecccccCCcccCcc--------
Confidence 999999999875 4568999999999999999999985 8986 899999876677766432
Q ss_pred HhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEe
Q 046900 195 ESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVY 274 (442)
Q Consensus 195 ~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~ 274 (442)
.++|++++||||||||.++|.+++++|+++|++|+++||+||+|.++.+++..+.++.++... .+++|+++
T Consensus 175 ----~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~-----~~~vi~~~ 245 (409)
T PRK07590 175 ----EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGA-----RECAIEFR 245 (409)
T ss_pred ----cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCc-----ccceEEEe
Confidence 278999999999999999999999999999999999999999999988866544556555321 35799999
Q ss_pred cCcccCCCCCceeEEEeecCHHHHH------------HHHH-cc-ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 046900 275 SLSKDLGLPGFRVGTIYSYNDKVVT------------TARR-MS-SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQ 340 (442)
Q Consensus 275 S~SK~~g~~G~RiG~i~~~~~~~~~------------~~~~-~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 340 (442)
||||.||+||+|+||++++++ +.+ .+.. .. ....++.++|.++..++.+.. .+|+++.++.++
T Consensus 246 SfSK~~~~pGlRiG~~i~~~~-li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~ 322 (409)
T PRK07590 246 SFSKTAGFTGTRCAYTVVPKE-LKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEG--KAQIKELIDYYM 322 (409)
T ss_pred cCccccCCcCceeEEEEcCHH-HhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCc--HHHHHHHHHHHH
Confidence 999999999999999999544 443 1111 12 224578899999998887543 467888999999
Q ss_pred HHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCH
Q 046900 341 KRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSE 420 (442)
Q Consensus 341 ~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~ 420 (442)
++++.+.+.|++.|+++..+.+|+|+|++++... ++.+++..+++++||.+.||+.|+....+++||++.. ++
T Consensus 323 ~~r~~l~~~L~~~~~~~~~~~g~~f~wi~~~~~~------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~ 395 (409)
T PRK07590 323 ENAKIIREGLESAGFEVYGGVNAPYIWVKTPDGM------SSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFG-SR 395 (409)
T ss_pred HHHHHHHHHHHhcCCceecCCcceEEEEECCCCC------CHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccC-CH
Confidence 9999999999998988888899999999998643 2567888888877999999999976556899999866 78
Q ss_pred HHHHHHHHHHHHHH
Q 046900 421 QTLEVALKRIHNFM 434 (442)
Q Consensus 421 e~i~~~l~~l~~~l 434 (442)
+++++++++|++++
T Consensus 396 ~~l~~~l~rl~~~~ 409 (409)
T PRK07590 396 ENVLEAMERIKKAL 409 (409)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998753
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=412.97 Aligned_cols=358 Identities=21% Similarity=0.310 Sum_probs=291.8
Q ss_pred CCCCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCc-cCCC-
Q 046900 45 TNPSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAK-FDLN- 121 (442)
Q Consensus 45 ~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~~- 121 (442)
..+.++|+|++++++++ ++.+.+.+.+.... .....|++ .|.++||+++|+|+++.+| +. ++++
T Consensus 41 ~~~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~----------~~~~~Y~~-~G~~~lr~aia~~~~~~~g--~~~~~~~~ 107 (410)
T PRK06290 41 HPDMELIDMGVGEPDEMADESVVEVLCEEAKK----------PENRGYAD-NGIQEFKEAAARYMEKVFG--VKDIDPVT 107 (410)
T ss_pred cCCCCeEEcCCCCCCCCCCHHHHHHHHHHHhC----------CCCCCCCC-CCcHHHHHHHHHHHHHHcC--CCcCCCcc
Confidence 34557899999998874 34455444432111 12346875 7999999999999998766 44 7786
Q ss_pred cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCce
Q 046900 122 RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (442)
+|++|+|+++++..++.+++++||.|+++.|+|+.|...++. .|++++.+|++++++|.+|++.+++.+.+ ++
T Consensus 108 ~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~-~g~~v~~v~~~~~~~~~~d~~~l~~~~~~------~~ 180 (410)
T PRK06290 108 EVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKY-YGGEVYNLPLLEENNFLPDLDSIPKDIKE------KA 180 (410)
T ss_pred eEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHH-cCCEEEEEecCCCcCCcCCHHHHHHhhcc------cc
Confidence 799999999999999999999999999999999999999985 99999999999877899999999988764 78
Q ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC
Q 046900 202 RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG 281 (442)
Q Consensus 202 ~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g 281 (442)
++|+++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++ .+.++.++.. ..+++|+++||||.||
T Consensus 181 k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~-~~~s~~~~~~-----~~~~~I~i~SfSK~~g 254 (410)
T PRK06290 181 KLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDG-KPLSFLSVPG-----AKEVGVEIHSLSKAYN 254 (410)
T ss_pred eEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCC-CCcChhcCCC-----ccccEEEEeechhhcC
Confidence 999999999999999999999999999999999999999999988865 3445555432 1367899999999999
Q ss_pred CCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 046900 282 LPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK 359 (442)
Q Consensus 282 ~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 359 (442)
+||+|+||+++ ++.+.+.+...... .+.+.++|.++..++++.. ++++.++.++++++.+.+.|++.|+.+.+
T Consensus 255 ~~GlRiG~ii~-~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 329 (410)
T PRK06290 255 MTGWRLAFVVG-NELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPE----ITEKIREKYSRRLDKLVKILNEVGFKAEM 329 (410)
T ss_pred CchhheEeEEe-CHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcH----HHHHHHHHHHHHHHHHHHHHHhCCCeecC
Confidence 99999999998 56666666654443 3445689999999998754 46778899999999999999999999888
Q ss_pred CCceEEEEEecCCccc-ccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeec--CCHHHHHHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLE-EQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFAN--MSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~e~i~~~l~~l~~~l~~ 436 (442)
|+||||+|++++.... .....++.++++.|+++.+|.+.||+.|+ +|+||+++. .++++.+++++.|.+.+.+
T Consensus 330 p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~----~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (410)
T PRK06290 330 PGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG----HFLRFSVTFEAKDEEEEDRILEEIKRRLSD 405 (410)
T ss_pred CCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc----CeEEEEEEcccccccchhHHHHHHHHHHhh
Confidence 9999999999986421 00112467899999998788888988763 699999982 2678899999999988765
Q ss_pred H
Q 046900 437 R 437 (442)
Q Consensus 437 ~ 437 (442)
.
T Consensus 406 ~ 406 (410)
T PRK06290 406 V 406 (410)
T ss_pred c
Confidence 3
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=415.26 Aligned_cols=357 Identities=25% Similarity=0.405 Sum_probs=300.9
Q ss_pred Cceeeeecccc---cccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEE
Q 046900 48 SGVIQMGLAEN---QVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 48 ~~~i~l~~~~n---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 124 (442)
+.+|+|+.+.+ .++.+.+++.+......... .....|.+..|.++||++|++|+...+| +.+++++|+
T Consensus 89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~-------~~~~~y~~~~G~~~LR~~ia~~l~~~~g--~~~~~~~Ii 159 (459)
T COG1167 89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGA-------SLALQYGPTAGLPELREAIAAYLLARRG--ISCEPEQIV 159 (459)
T ss_pred CceecCCCCCCCcccCCHHHHHHHHHHHHhhcch-------hhhhcCCCCCCcHHHHHHHHHHHHHhcC--CccCcCeEE
Confidence 56788887653 24556666655544321100 1146788889999999999999997666 778999999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|++++++++++.+++|||+|++++|+|.....+++. .|+++++||+|++| +|+|.|++.++++ ++|++
T Consensus 160 iT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~-~g~~~~~vp~d~~G---~~~e~le~~~~~~-----~~k~~ 230 (459)
T COG1167 160 ITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQALEA-LGARVIPVPVDEDG---IDPEALEEALAQW-----KPKAV 230 (459)
T ss_pred EeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHH-cCCcEEecCCCCCC---CCHHHHHHHHhhc-----CCcEE
Confidence 999999999999999999999999999999999999995 99999999999765 9999999999864 67766
Q ss_pred EEe-CCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 205 LIT-NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 205 ~l~-~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
+++ +-+||||.+||.+++++|+++|++|+++||+||+|+++.|++.+..++..++. .++||+++||||++. |
T Consensus 231 y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~------~~rViy~gSFSK~l~-P 303 (459)
T COG1167 231 YVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDA------PGRVIYLGSFSKTLA-P 303 (459)
T ss_pred EECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCC------CCCEEEEeeehhhcc-c
Confidence 554 33799999999999999999999999999999999999999877777888866 489999999999996 9
Q ss_pred CceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC---CCeee
Q 046900 284 GFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA---GIECL 358 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~ 358 (442)
|+|+||+++| +.+.+.+.. ......++.+.|.+++.++.++.+ ++|++++++.|+++++.+.+.|.++ ++.+.
T Consensus 304 glRlG~vv~p-~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~-~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~ 381 (459)
T COG1167 304 GLRLGYVVAP-PELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHY-DRHLRRLRREYARRRDALLEALAEYLPELATWT 381 (459)
T ss_pred ccceeeeeCC-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeee
Confidence 9999999995 454444433 333467889999999999996654 9999999999999999999999987 46788
Q ss_pred cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeC-CCCCCCCC--CCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 359 KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISP-GSSCHCSE--PGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 359 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~p-g~~f~~~~--~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
.|.+|||+|+++++..+ +.++...++++ ||.+.| |..|.... .+++||+|+..+++++++++++|.+++.
T Consensus 382 ~p~gG~flwl~l~~~~~------~~~l~~~a~~~-gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~ 454 (459)
T COG1167 382 RPEGGLFLWLELPEGID------ARELLAAALEK-GVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLR 454 (459)
T ss_pred cCCceEEEEEEcCCCCC------HHHHHHHHHHC-CCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 89999999999998754 67888888777 999998 88887643 3589999998789999999999999998
Q ss_pred HHH
Q 046900 436 KRE 438 (442)
Q Consensus 436 ~~~ 438 (442)
++.
T Consensus 455 ~~~ 457 (459)
T COG1167 455 EAA 457 (459)
T ss_pred HHh
Confidence 764
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-52 Score=407.82 Aligned_cols=350 Identities=23% Similarity=0.376 Sum_probs=292.4
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.++|+|+.++++++ ++.+.+.+.+.... ....|++..|.+++|+++|+|+++.+| +.+++++|++|
T Consensus 32 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-----------~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~it 98 (387)
T PRK08960 32 HDVIHLEIGEPDFTTAEPIVAAGQAALAA-----------GHTRYTAARGLPALREAIAGFYAQRYG--VDVDPERILVT 98 (387)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhc-----------CCCccCCCCCCHHHHHHHHHHHHHHhC--CCCChhhEEEc
Confidence 46799999998864 45555555543211 124688888999999999999998876 55789999999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+|+++++..++.+++++||.|++++|+|+.+...+.. .|.+++.++++.+++|.+|++.+++.+++ +++++++
T Consensus 99 ~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i~i 171 (387)
T PRK08960 99 PGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRL-VEGAAQLVPVGPDSRYQLTPALVERHWNA------DTVGALV 171 (387)
T ss_pred cCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHh-cCCeEEEEecCcccCCCCCHHHHHHHhCc------cceEEEE
Confidence 9999999999999999999999999999999998885 89999999998777899999999998765 6788999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
++||||||.+++.+++++|+++|++++++||+||+|.++.+++. ..++... .+++++++||||.||++|+|
T Consensus 172 ~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~-~~~~~~~--------~~~vi~~~S~SK~~g~~GlR 242 (387)
T PRK08960 172 ASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD-AASVLEV--------DDDAFVLNSFSKYFGMTGWR 242 (387)
T ss_pred ECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCChhhc--------cCCEEEEeecccccCCcccE
Confidence 99999999999999999999999999999999999999888643 3444332 36899999999999999999
Q ss_pred eEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCee-ecCCce
Q 046900 287 VGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIEC-LKGNAG 363 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~g 363 (442)
+||++++ +.+.+.+.+.... ..++.+.|.++.+++.+. . .+++++.++.++++++.+.+.|++.|+.+ ..|.+|
T Consensus 243 iG~~~~~-~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~-~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~ 319 (387)
T PRK08960 243 LGWLVAP-PAAVPELEKLAQNLYISASTPAQHAALACFEPE-T-LAILEARRAEFARRRDFLLPALRELGFGIAVEPQGA 319 (387)
T ss_pred EEEEEcC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcC-c-HHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCee
Confidence 9999995 5566666554432 456889999999888753 2 56788899999999999999999888765 468899
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC-CCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS-EPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~-~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
+|+|++++.... ++.+++..+++++||.|.||+.|+.. ..+|+||+++. +.+.+++++++|++++.
T Consensus 320 ~f~~~~~~~~~~-----~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~-~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 320 FYLYADISAFGG-----DAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ-SLPRLQEAVERIARGLR 386 (387)
T ss_pred EEEEEeccccCC-----CHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 999999986311 25688888887779999999999753 34799999998 78999999999998765
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-52 Score=410.44 Aligned_cols=354 Identities=21% Similarity=0.389 Sum_probs=298.5
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.++|+|+.+++.++ ++.+.+.+.+.... ....|.+..|.++||+++|+++++.+| ..+++++|++|
T Consensus 33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~~t 99 (391)
T PRK08361 33 ENVISLGIGEPDFDTPKNIKEAAKRALDE-----------GWTHYTPNAGIPELREAIAEYYKKFYG--VDVDVDNVIVT 99 (391)
T ss_pred cCeEEcCCCCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCcccEEEe
Confidence 46899999998874 35555555543211 234688888999999999999988766 45789999999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+|+++++.+++.+++++||.|++++|+|..+...+.. .|++++.+|++.+++|.+|++.+++.+.+ +++++++
T Consensus 100 ~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~~~v~i 172 (391)
T PRK08361 100 AGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKI-AEAKPIRIPLREENEFQPDPDELLELITK------RTRMIVI 172 (391)
T ss_pred CChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHH-cCCEEEEEecCCccCCCCCHHHHHHhccc------ccEEEEE
Confidence 9999999999999999999999999999999998885 89999999998877889999999998875 7889999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
+||+||||.+++.+++++|+++|++++++||+||+|+++.+++....++.+.. .+++++++||||.||++|+|
T Consensus 173 ~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-------~~~~i~~~s~SK~~~~~GlR 245 (391)
T PRK08361 173 NYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYA-------PDNTILANSFSKTFAMTGWR 245 (391)
T ss_pred eCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcC-------CCCEEEEecCchhcCCcHhh
Confidence 99999999999999999999999999999999999999888655555555442 36899999999999999999
Q ss_pred eEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCce
Q 046900 287 VGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAG 363 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g 363 (442)
+||++++ +.+.+.+..... .+.++.+.|.++..++.+..+ .+++++.++.++++++.+.+.|++. |+.+..|++|
T Consensus 246 iG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~ 323 (391)
T PRK08361 246 LGFVIAP-EQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKES-WKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGA 323 (391)
T ss_pred hhhhccC-HHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEE
Confidence 9999995 455555544332 356788999999999987654 3578889999999999999999987 8888899999
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
+|+|++++.... ++.++++.|++++||.|.||+.|+..+++++||+++. +++++++++++|++++++
T Consensus 324 ~~~~~~l~~~~~-----~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 324 FYVFANIDETGM-----SSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYAT-SKEKLIEAMERMEKALEE 390 (391)
T ss_pred EEEEEECCCCCC-----CHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 999999974211 2567888888777999999999976667899999997 788999999999998864
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=405.40 Aligned_cols=357 Identities=26% Similarity=0.472 Sum_probs=295.0
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC-CcEEE
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL-NRIVV 125 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-~~i~~ 125 (442)
.++|+|+.+.++++ ++.+.+.+.+.... ....|++..|.++||+++++|+++.++ +.+++ ++|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~~i~i 96 (391)
T PRK07309 30 PGILKLTLGEPDFTTPDHVKEAAKRAIDA-----------NQSHYTGMAGLLELRQAAADFVKEKYN--LDYAPENEILV 96 (391)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEEE
Confidence 46899999998764 35555555543211 124698889999999999999998776 44554 78999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++.+++.+++++||.|++++|+|+.+...++. .|++++.+++++ .+|.+|++.+++++++. ..++++++
T Consensus 97 t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~---~~~~~~i~ 171 (391)
T PRK07309 97 TIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNL-VGAEIVEIDTTE-NDFVLTPEMLEKAILEQ---GDKLKAVI 171 (391)
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHH-cCCEEEEEecCC-cCCcCCHHHHHHHhhcc---CCCeEEEE
Confidence 99999999999999999999999999999999998885 899999999864 45789999999988642 22688999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.+++.+++++|+++|++|+++||+||+|+++.+++..+.++.++. .+++++++||||.||+||+
T Consensus 172 l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-------~~~~i~~~S~SK~~g~~Gl 244 (391)
T PRK07309 172 LNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYL-------PDQTILINGLSKSHAMTGW 244 (391)
T ss_pred EECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhc-------cCCEEEEecChhhccCccc
Confidence 999999999999999999999999999999999999999998765556666553 3689999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCce
Q 046900 286 RVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG 363 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 363 (442)
|+||++++ +.+.+.+..... ...++.++|.++..++++..+ +....++.++++++++.+.|++.|+.+..|++|
T Consensus 245 RvG~~v~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg 320 (391)
T PRK07309 245 RIGLIFAP-AEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKD---DALPMKKEYIKRRDYIIEKMTDLGFKIIKPDGA 320 (391)
T ss_pred eeEEEEeC-HHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChh---HHHHHHHHHHHHHHHHHHHHHHCCCeecCCCee
Confidence 99999995 555555544332 245788899999999987543 234677889999999999999989999999999
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
+|+|++++.... .++.++++.+++++||.+.||+.|+...+++|||+++. +.+++++++++|+++++++.
T Consensus 321 ~~~~~~l~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~i~~l~~~~~~~~ 390 (391)
T PRK07309 321 FYIFAKIPAGYN----QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA-SMETIKEAMKRLKEYMEEHA 390 (391)
T ss_pred EEEEEECCCCCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHhhc
Confidence 999999886421 12567888877777999999999986667899999997 78899999999999997764
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=408.59 Aligned_cols=349 Identities=20% Similarity=0.318 Sum_probs=287.0
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC-CcEEE
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL-NRIVV 125 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-~~i~~ 125 (442)
.++|+|+.++++++ ++.+.+.+.+.... ....|++..|.++||+++++++.+.+| ..+++ ++|++
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-----------~~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~~i~i 95 (384)
T PRK12414 29 HDALNLSQGAPNFAPDPALVEGVARAMRD-----------GHNQYAPMAGIAALREALAEKTERLYG--ARYDPASEVTV 95 (384)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHHh-----------CCCCcCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEEE
Confidence 46899999998775 45555555543211 135699999999999999999998876 33455 68999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++..++++++++||+|+++.|+|..+...++. .|++++.+++++ ++|.+|++.|++.+++ ++++++
T Consensus 96 t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v~ 167 (384)
T PRK12414 96 IASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRL-QGATPVAIKLSP-EDFRVNWDEVAAAITP------RTRMII 167 (384)
T ss_pred ECChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHH-cCCEEEEEecCc-cccccCHHHHHhhcCc------ccEEEE
Confidence 99999999999999999999999999999999998885 899999999875 3588999999998864 788999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++..+.++..+.. ..+++++++||||.||+||+
T Consensus 168 i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~-----~~~~~i~~~SfSK~~~~pGl 242 (384)
T PRK12414 168 VNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRE-----LAERSVIVSSFGKSYHVTGW 242 (384)
T ss_pred EcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcC-----ccCcEEEEecccccccCccc
Confidence 9999999999999999999999999999999999999999987654445544322 13689999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCce
Q 046900 286 RVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG 363 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 363 (442)
|+||++++ +.+.+.+.+... .+.++.+.|.++..++.++.+ ..+.++.|+++|+.+.+.|++.|+.+.+++||
T Consensus 243 RiG~~v~~-~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~gg 317 (384)
T PRK12414 243 RVGYCLAP-AELMDEIRKVHQFMVFSADTPMQHAFAEALAEPAS----YLGLGAFYQRKRDLLARELAGSRFELLPSEGS 317 (384)
T ss_pred eEEEEecC-HHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHHHHHHhCCCeecCCCcc
Confidence 99999995 556666655442 356788999999999987653 23567889999999999999999988899999
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCC--CCEEEEEeecCCHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSE--PGWFRVCFANMSEQTLEVALKRIHN 432 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~--~~~iRls~~~~~~e~i~~~l~~l~~ 432 (442)
||+|++++..... .+.+++..+++++||.+.||+.|+..+ .+|+||+++. +++++++++++|.+
T Consensus 318 ~~~~~~~~~~~~~----~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~~~rl~~ 383 (384)
T PRK12414 318 FFMLARFRHFSDE----SDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK-DDATLVEGARRLCS 383 (384)
T ss_pred eEEEEcccccCCC----CHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence 9999998753211 245677666677799999999996432 5799999998 89999999999975
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=393.63 Aligned_cols=354 Identities=19% Similarity=0.344 Sum_probs=296.8
Q ss_pred eeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHH
Q 046900 53 MGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATA 131 (442)
Q Consensus 53 l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ 131 (442)
|+.+.+..+ ++.+.+.+.+..... ...+|....|+++|+++|++.+...+|. .....++|+||+|+.+
T Consensus 36 LgqGfp~~~~P~fv~ea~~~~~~~~----------~~~qYt~~~G~p~L~~aL~k~~se~~~~-~~~~~~eVlVT~GA~~ 104 (420)
T KOG0257|consen 36 LGQGFPDFPPPKFVTEAAKNAAKEP----------STNQYTRGYGLPQLRKALAKAYSEFYGG-LLDPDDEVLVTAGANE 104 (420)
T ss_pred ccCCCCCCCCcHHHHHHHHHHhccc----------hhccccccCCchHHHHHHHHHHHHHhcc-ccCCcccEEEecCchH
Confidence 788876664 466666666654321 2467888889999999999999997763 3345567999999999
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC------CCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 132 ANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD------SSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 132 ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~------~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
+|..++.+++++||.|++.+|.|+.|...++. .|...+.+++. ....|.+|++.++.++.+ ++|+|+
T Consensus 105 ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~m-aG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~------kTk~Ii 177 (420)
T KOG0257|consen 105 AISSALLGLLNPGDEVIVFEPFFDCYIPQVVM-AGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITE------KTKAII 177 (420)
T ss_pred HHHHHHHHHcCCCCEEEEecCcchhhhhHHhh-cCCcceeeccccccccccCccccCChHHHHhhccC------CccEEE
Confidence 99999999999999999999999999999996 99999999988 456799999999999987 999999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+|+||||||.++|+++|++|+++|++||++||.||+|..++|++..+.++..+ ++ ++++++.++|+||+||++||
T Consensus 178 ~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~asl-Pg----m~ertitvgS~gKtf~~TGW 252 (420)
T KOG0257|consen 178 LNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASL-PG----MYERTITVGSFGKTFGVTGW 252 (420)
T ss_pred EeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecC-Cc----hhheEEEeccccceeeeeee
Confidence 99999999999999999999999999999999999999999999878888777 54 58999999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhH-----HHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 046900 286 RVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFT-----ENYIKTNRERLQKRYQMIIEGLRSAGIECL 358 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 358 (442)
|+||+++ ++.+........+. ..++++.|.+.+..++.+... ..++.++.+.|+++|+.|.+.|.++|+++.
T Consensus 253 rlGW~ig-p~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg~~v~ 331 (420)
T KOG0257|consen 253 RLGWAIG-PKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEELGLKVT 331 (420)
T ss_pred eeeeeec-hHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 9999999 66666666554433 678889999888877754310 135666899999999999999999999999
Q ss_pred cCCceEEEEEecCCcccc------cChhhHHHHHHHHHHcCcEEEeCCCCCCCCC-----CCEEEEEeecCCHHHHHHHH
Q 046900 359 KGNAGLFCWMNLSPLLEE------QTREGELALWDSMLHEVKLNISPGSSCHCSE-----PGWFRVCFANMSEQTLEVAL 427 (442)
Q Consensus 359 ~~~~g~~~~~~~~~~~~~------~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~-----~~~iRls~~~~~~e~i~~~l 427 (442)
.|+|++|+|++++..... ...-++..++..++++.|+.+.|++.|+... .+++|+++.. +++.++.++
T Consensus 332 ~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k-~~~~L~~a~ 410 (420)
T KOG0257|consen 332 GPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCK-ADETLRKAI 410 (420)
T ss_pred cCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHh-hHHHHHHHH
Confidence 999999999999821110 0111356788999999999999999998643 2578999987 788899999
Q ss_pred HHHH
Q 046900 428 KRIH 431 (442)
Q Consensus 428 ~~l~ 431 (442)
++|+
T Consensus 411 e~l~ 414 (420)
T KOG0257|consen 411 ERLK 414 (420)
T ss_pred HHHh
Confidence 9988
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-52 Score=401.33 Aligned_cols=341 Identities=23% Similarity=0.372 Sum_probs=285.3
Q ss_pred eeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEEEec
Q 046900 50 VIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIVVTA 127 (442)
Q Consensus 50 ~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~~t~ 127 (442)
+++|+.+.+.++ ++.+.+.+++... ....|+++.|.++||+++++|+++.+| ++++++ +|++|+
T Consensus 2 ~~~~~~g~p~~~~~~~~~~~~~~~~~------------~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~Iiit~ 67 (350)
T TIGR03537 2 LFDFGTGDPKEPTPPFIRKALIDAVP------------EVSQYPSALGTKALREAISGWFERRFG--VKLDPDAQVLPSA 67 (350)
T ss_pred eEeccCCCCCCCCCHHHHHHHHHHHh------------ccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEEEcC
Confidence 578888877665 4556666655421 245799999999999999999998877 567887 999999
Q ss_pred ChHHHHHHHHHhhcCCC---CeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 128 GATAANELLTFILADPG---DALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 128 G~~~ai~~~~~~l~~~g---d~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
|+++++..++.+++++| |.|+++.|+|+.|...++. .|++++.++++.+++|++|++.+++++.+ +++++
T Consensus 68 Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i 140 (350)
T TIGR03537 68 GSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALF-AGGEPTAVKLKKEDGFLLRLEKVEKSILE------ETKIV 140 (350)
T ss_pred ChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchHHHHHh-cCCEEEEcccCcccCCccCHHHHHHhhhh------ccEEE
Confidence 99999999999999887 6999999999999999995 99999999998667899999999998875 78999
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++++||||||.+++.+++++|+++|++++++||+||+|+++.++. ...++.... .+++++++||||.+|++|
T Consensus 141 ~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~-------~~~~i~~~s~SK~~g~~G 212 (350)
T TIGR03537 141 WINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGE-PPHSALEVG-------IENVLAFHSLSKRSGMTG 212 (350)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCC-CCCchhhcC-------cCCEEEEeecccccCCcc
Confidence 999999999999999999999999999999999999999987754 344444332 378999999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccccC--CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSFT--LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA 362 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 362 (442)
+|+||+++ ++.+.+.++.....+ ..+.+.|.++...+.... ++++.++.++++++.+.+.|++.|+++.+|++
T Consensus 213 lRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~g 287 (350)
T TIGR03537 213 YRSGFVAG-DEKLISFLRKLRANFGVASPDFVQAAAKAAWSDDN----HVLERRKIFKRKRDLFIEFFNKVGLEYLYPDA 287 (350)
T ss_pred ccceeeec-CHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcH----HHHHHHHHHHHHHHHHHHHHHHCCCcccCCCe
Confidence 99999998 566666666544332 334467888777776533 46778899999999999999999998889999
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHN 432 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~ 432 (442)
|+|+|++++... ++.++++.|+++ ||.|.||..|+...++++||+++. +++++++++++|++
T Consensus 288 ~~~~~~~~~~~~------~~~~l~~~L~~~-gv~v~~g~~f~~~~~~~~Ri~~~~-~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 288 TFYLWVKVPSGI------DAKDYALRLLEN-GIVVAPGENFGSGEEGYVRVALVP-TLEECEEALRLWER 349 (350)
T ss_pred EEEEEEECCCCC------CHHHHHHHHHHC-CEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHhc
Confidence 999999998643 257888998876 999999999976556899999985 88999999999875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-52 Score=408.41 Aligned_cols=360 Identities=22% Similarity=0.371 Sum_probs=299.4
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|+|+.+.+.++ ++.+.+.+.+.... ...+|+++.|.++||+++++++.+.+| ..+++++|++
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-----------~~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~i~~ 98 (402)
T PRK06107 32 GRSIVDLTVGEPDFDTPDHIKQAAVAAIER-----------GETKYTLVNGTPALRKAIIAKLERRNG--LHYADNEITV 98 (402)
T ss_pred cCCEEEcCCCCCCCCCCHHHHHHHHHHHHc-----------CCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEEE
Confidence 347899999988765 35555555544321 235799999999999999999998766 4568899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++..++.+++++||+|++++|+|..|...+.. .|..++.++++.+++|.+|++.+++.+.+ ++++++
T Consensus 99 t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~~------~~~~v~ 171 (402)
T PRK06107 99 GGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLA-NDGTPVIVACPEEQGFKLTPEALEAAITP------RTRWLI 171 (402)
T ss_pred eCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHH-cCCEEEEecCCcccCCCCCHHHHHhhcCc------CceEEE
Confidence 99999999999999999999999999999999888874 88888999887667789999999988754 788999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhc-CcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRK-NIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~-~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++||+||||.++|.+++++|+++|+++ +++||+||+|+++.|++..+.++.++.++ ..+++++++||||.||+||
T Consensus 172 l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~----~~~~vi~~~S~SK~~~~pG 247 (402)
T PRK06107 172 LNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPE----LRDRVLVTNGVSKTYAMTG 247 (402)
T ss_pred EECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcC----ccCCEEEEeccchhhcCcc
Confidence 999999999999999999999999998 99999999999998877666677666442 2468999999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC
Q 046900 285 FRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGN 361 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 361 (442)
+|+||+++ ++.+.+.+..... .+.++.++|.++..++.+. .+++++.++.++++++.+.+.|++. |+.+.+|+
T Consensus 248 lRiG~~~~-~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~ 323 (402)
T PRK06107 248 WRIGYAAG-PADLIAAINKLQSQSSSCPSSISQAAAAAALNGD---QSFVTESVAVYKQRRDYALALLNAIPGLSCLVPD 323 (402)
T ss_pred cceeeeec-CHHHHHHHHHHHHhcccCCChHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCC
Confidence 99999999 4566666665443 3568899999999999753 3578888999999999999999887 88888999
Q ss_pred ceEEEEEecCCcccc-----cChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 362 AGLFCWMNLSPLLEE-----QTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 362 ~g~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
+|+|+|++++...+. ....+..+++..+++++||.+.||+.|+. .+|+||+++. +++++++++++|++++++
T Consensus 324 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~--~~~iRis~~~-~~e~l~~~l~~l~~~l~~ 400 (402)
T PRK06107 324 GAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL--SPYFRLSIAT-SLETLEEACARIERAVAA 400 (402)
T ss_pred cceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCC-CHHHHHHHHHHHHHHHHh
Confidence 999999998542110 00113567888888878999999999963 5799999997 899999999999999876
Q ss_pred H
Q 046900 437 R 437 (442)
Q Consensus 437 ~ 437 (442)
.
T Consensus 401 ~ 401 (402)
T PRK06107 401 L 401 (402)
T ss_pred c
Confidence 4
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=376.32 Aligned_cols=356 Identities=22% Similarity=0.340 Sum_probs=310.7
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
..++|.|.+++..++ ++.+.+.+++..+. ...+|+ .+..++.++|++|.+++++ ..++++.|++
T Consensus 24 ~~DvlPmWVADMDf~~pp~i~~Al~~rvdh-----------GvfGY~--~~~~~~~~ai~~w~~~r~~--~~i~~e~i~~ 88 (388)
T COG1168 24 NEDVLPMWVADMDFPTPPEIIEALRERVDH-----------GVFGYP--YGSDELYAAIAHWFKQRHQ--WEIKPEWIVF 88 (388)
T ss_pred CCCcceeeeecccCCCCHHHHHHHHHHHhc-----------CCCCCC--CCCHHHHHHHHHHHHHhcC--CCCCcceEEE
Confidence 368899999998774 36666666655432 234565 4668899999999999987 5578999999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC-CCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD-SSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+.|...++..++++|+++||.|++.+|.|++|...++. .|.+++..|+- +++.|.+|.++||+++.+ .++|++
T Consensus 89 ~p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~-n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~-----~~vkl~ 162 (388)
T COG1168 89 VPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKL-NGRKVIENPLVEDDGRYEIDFDALEKAFVD-----ERVKLF 162 (388)
T ss_pred cCcchHhHHHHHHHhCcCCCeeEecCCCchHHHHHHhh-cCcEEEeccccccCCcEEecHHHHHHHHhc-----CCccEE
Confidence 99999999999999999999999999999999999995 99999999987 556799999999999986 367999
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++||||||||.+.+.++|.+|.++|.+||++||+||+|+++++.+..+.++.++.+. ..++++.+.|.||+|+++|
T Consensus 163 iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~----~a~~~it~~saSKtFNlaG 238 (388)
T COG1168 163 ILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSER----FADNSITLTSASKTFNLAG 238 (388)
T ss_pred EEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChh----hhcceEEEeeccccccchh
Confidence 999999999999999999999999999999999999999999999778888877664 2588999999999999999
Q ss_pred ceeEEEeecCHHHHHHH-HHc--cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeec
Q 046900 285 FRVGTIYSYNDKVVTTA-RRM--SSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA--GIECLK 359 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~-~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~ 359 (442)
+++++++.+++.+++.+ +++ ......|.++..+..++++.++ .|+.++++.++.+++++.+.|.+. ++++..
T Consensus 239 L~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~---~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~ 315 (388)
T COG1168 239 LKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGE---PWLDELLEYLKDNRDYVADFLNKHLPGVKVTE 315 (388)
T ss_pred hhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHHhhCCCcEEec
Confidence 99999999998885543 333 2346678888888888888654 589999999999999999999987 899999
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
|+|.|.+|+++..... ++.++.+.++++.+|.+.+|..||..+.|++|+++++ +.+.+++++++|+..+++
T Consensus 316 p~gTYL~WLD~r~l~l-----~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~ac-pr~~L~eal~ri~~al~~ 386 (388)
T COG1168 316 PQGTYLAWLDCRELGL-----DDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFAC-PRAILEEALERLKRALKK 386 (388)
T ss_pred CCCceeeeeeccccCC-----ChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCC-CHHHHHHHHHHHHHHHhc
Confidence 9999999999998643 3578899999999999999999999889999999999 999999999999988765
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=405.58 Aligned_cols=357 Identities=21% Similarity=0.363 Sum_probs=292.6
Q ss_pred Cceeeeeccccc----c-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCc
Q 046900 48 SGVIQMGLAENQ----V-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR 122 (442)
Q Consensus 48 ~~~i~l~~~~n~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~ 122 (442)
.++|+|+.+++. + +.+.+.+.+.+.... .....|++..|..+||+++|+|+++. + ..+++++
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~----------~~~~~Y~~~~g~~~lr~aia~~~~~~-~--~~~~~~~ 97 (401)
T TIGR01264 31 KPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDS----------GKYNGYAPTVGALSAREAIASYYHNP-D--GPIEADD 97 (401)
T ss_pred CCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhc----------cCCCCCCCCCCCHHHHHHHHHHHhhc-C--CCCCHHH
Confidence 477999998763 3 445566555543221 12356988899999999999999863 3 3478999
Q ss_pred EEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCcee
Q 046900 123 IVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVR 202 (442)
Q Consensus 123 i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 202 (442)
|++|+|+++++.+++.+++++||.|++++|+|..+...++. .|++++.++++.+++|++|++.+++.+++ +++
T Consensus 98 i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~-~g~~v~~~~~~~~~~~~~d~~~l~~~~~~------~~~ 170 (401)
T TIGR01264 98 VVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAES-MGIEVKLYNLLPDKSWEIDLKQLESLIDE------KTA 170 (401)
T ss_pred EEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHH-cCCEEEEeecCCccCCCCCHHHHHHHhcc------Cce
Confidence 99999999999999999999999999999999999998884 99999999987766789999999988764 678
Q ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCC
Q 046900 203 GVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGL 282 (442)
Q Consensus 203 ~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~ 282 (442)
+++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++.++.+ ..++|+++||||.|++
T Consensus 171 ~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~------~~~vi~~~SfSK~~~~ 244 (401)
T TIGR01264 171 ALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSS------TVPILSCGGLAKRWLV 244 (401)
T ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCC------CCcEEEEccCcccCCC
Confidence 9999999999999999999999999999999999999999999987755666666643 2469999999999999
Q ss_pred CCceeEEEeecCH-----HHHHHHHHccc-cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 046900 283 PGFRVGTIYSYND-----KVVTTARRMSS-FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GI 355 (442)
Q Consensus 283 ~G~RiG~i~~~~~-----~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 355 (442)
||+|+||++++++ .+.+.+..... .+.++++.|.++..++.+. .++++++.++.++++|+.+.+.|++. |+
T Consensus 245 ~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~l~~~~~~~~~~r~~l~~~L~~~~~~ 322 (401)
T TIGR01264 245 PGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSILLRT--PQEYFDGTLSVLESNAMLCYGALAAVPGL 322 (401)
T ss_pred ccceEEEEEecCcchhHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999998642 23333444332 3567889999999999762 25678889999999999999999987 77
Q ss_pred eeecCCceEEEEEecCCc-ccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 356 ECLKGNAGLFCWMNLSPL-LEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 356 ~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
.+..|++|+|+|++++.. .. ...++.++++.+++++||.|.||+.|+ .++++||+++. +++++++++++|.+++
T Consensus 323 ~~~~p~~g~f~~~~~~~~~~~--~~~~~~~~~~~l~~~~gI~v~pg~~f~--~~~~iRis~~~-~~~~l~~~l~rl~~~~ 397 (401)
T TIGR01264 323 RPVMPSGAMYMMVGIEMEHFP--EFKNDVEFTERLVAEQSVFCLPGSCFE--YPGFFRVVLTV-PVVMMEEACSRIQEFC 397 (401)
T ss_pred cccCCCeeeEEEEEecccccC--CCCCHHHHHHHHHHhCCEEEeCchhcC--CCCeEEEEEcC-CHHHHHHHHHHHHHHH
Confidence 777899999999998642 00 001256788888876799999999985 36899999997 7899999999999998
Q ss_pred HHH
Q 046900 435 QKR 437 (442)
Q Consensus 435 ~~~ 437 (442)
+++
T Consensus 398 ~~~ 400 (401)
T TIGR01264 398 ERH 400 (401)
T ss_pred hcc
Confidence 753
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=400.65 Aligned_cols=343 Identities=19% Similarity=0.271 Sum_probs=276.5
Q ss_pred CceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.++|+|+.++++++. +.+.+.+.+.. .....|+++.|.++||+++|+|+++++| +++++++|++|
T Consensus 24 ~~~i~l~~~~p~~~~~~~~~~a~~~~~------------~~~~~Y~~~~G~~~lr~aia~~l~~~~g--~~~~~~~I~it 89 (374)
T PRK05839 24 YKGLDLTIGEPQFETPKFIQDALKNNA------------HLLNKYPKSAGEESLREAQRGFFKRRFK--IELKENELIPT 89 (374)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHh------------hccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCcceEEEe
Confidence 478999999987743 55555555432 1246799999999999999999998877 55789999999
Q ss_pred cChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 127 AGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+++++..++.+++ .+||.|+++.|+|+.|...+.. .|+++++++++++++|.+|++..+ + + ++|++
T Consensus 90 ~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~-~g~~v~~v~~~~~~~~~~d~~~~~--~-~------~~k~v 159 (374)
T PRK05839 90 FGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIA-SRAKVLLMPLTKENDFTPSLNEKE--L-Q------EVDLV 159 (374)
T ss_pred cCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHh-cCCEEEEeecccccCCcCCcchhh--h-c------cccEE
Confidence 999999999988764 4789999999999999999984 999999999987778888765542 2 1 68899
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
+++|||||||.++|.+++++|+++|+++|++||+||+|.++.++. .+.++.......+....+++|+++||||.|++||
T Consensus 160 ~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G 238 (374)
T PRK05839 160 ILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENT-PPPSLLEASILVGNESFKNVLVINSISKRSSAPG 238 (374)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCC-CCCCHhhhhcccCccccCcEEEEeccccccCCcc
Confidence 999999999999999999999999999999999999999976543 3445443321000012479999999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc
Q 046900 285 FRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA 362 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 362 (442)
+|+||+++ ++.+.+.+.+... .+.++.+.|.++..++.+. +++++.++.++++++.+.+.| ++. .|.+
T Consensus 239 lRiG~ii~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~l---~~~--~p~g 308 (374)
T PRK05839 239 LRSGFIAG-DASILKKYKAYRTYLGCASPLPLQKAAAVAWLDD----EHAEFFRNIYAKNLKLAREIL---GIT--IPPA 308 (374)
T ss_pred ceeEEEec-CHHHHHHHHHHHhhcCCCCChHHHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHhc---CCC--CCCe
Confidence 99999999 4666666655443 2456788899888777653 356778889999999888776 343 6889
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC--CCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS--EPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~--~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
|+|+|++++. ..+++.++++++||.|.||+.|+.. .++|+|||++. +++++++++++|+++++
T Consensus 309 g~fi~~~~~~---------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 309 TFYVWLPVDN---------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVY-DTPKLEKALEIIKTYLE 373 (374)
T ss_pred eEEEEEeCCC---------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHhh
Confidence 9999999874 4678888887669999999988643 36899999987 79999999999999874
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=402.78 Aligned_cols=352 Identities=23% Similarity=0.441 Sum_probs=295.3
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.++|+|+.++++++ ++.+.+.+.+.... ....|++..|.++||+++|+++.+.+| ..+++++|++|
T Consensus 24 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~-----------~~~~Y~~~~G~~~lr~~la~~~~~~~~--~~~~~~~i~~t 90 (382)
T PRK06108 24 EGVLPLWFGESDLPTPDFIRDAAAAALAD-----------GETFYTHNLGIPELREALARYVSRLHG--VATPPERIAVT 90 (382)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCHHHHHHHHHHHHHHhC--CCcCcceEEEe
Confidence 46899999999886 46666665554321 124599989999999999999998766 45789999999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCC-CCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSS-NNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
+|+++++..++.+++++||.|++++|+|+.+...++. .|++++.+|++.+ ++|.+|++.+++.+.+ ++++++
T Consensus 91 ~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~------~~~~i~ 163 (382)
T PRK06108 91 SSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKI-LGARVVCVPLDFGGGGWTLDLDRLLAAITP------RTRALF 163 (382)
T ss_pred CChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHH-CCCEEEEeeCCCCCCCccCCHHHHHHhcCc------cceEEE
Confidence 9999999999999999999999999999999998885 8999999999753 4688999999988764 788999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCC-CCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS-SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~-~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
+++||||||.+++.+++++|+++|++++++||+||+|+++.++ +....++..+... .+++++++||||.||++|
T Consensus 164 l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~S~SK~~g~~G 238 (382)
T PRK06108 164 INSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEP-----DDRIIFVNSFSKNWAMTG 238 (382)
T ss_pred EECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCC-----cCCEEEEeechhhccCcc
Confidence 9999999999999999999999999999999999999999886 3344455544321 368999999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC
Q 046900 285 FRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGN 361 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 361 (442)
+|+||++++ +.+.+.+..... ...++.+.|.++..++.+. .+++++.++.++++++.+.+.|++. |+++..|+
T Consensus 239 ~RiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~ 314 (382)
T PRK06108 239 WRLGWLVAP-PALGQVLEKLIEYNTSCVAQFVQRAAVAALDEG---EDFVAELVARLRRSRDHLVDALRALPGVEVAKPD 314 (382)
T ss_pred cceeeeeCC-HHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC
Confidence 999999994 556665554332 2456888999999999764 3467788899999999999999887 88888899
Q ss_pred ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 362 AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 362 ~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
+|+|+|++++... +..++++.|++++||.+.||+.|+...++++||+++. +++++++++++|+++++
T Consensus 315 ~g~~~~~~l~~~~------~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 315 GAMYAFFRIPGVT------DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR-DPARLDEAVERLRRFLA 381 (382)
T ss_pred eeEEEEEeCCCCC------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 9999999997642 2568889888877999999999975557899999998 89999999999998874
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=371.23 Aligned_cols=363 Identities=21% Similarity=0.354 Sum_probs=307.7
Q ss_pred Cceeeeecccccc-----cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCc
Q 046900 48 SGVIQMGLAENQV-----SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR 122 (442)
Q Consensus 48 ~~~i~l~~~~n~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~ 122 (442)
..+|.++.+++.. +.+...+++.+.... .....|.+..|....|+++|+|+++... ..+++++
T Consensus 61 k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~S----------gk~N~Yaps~G~~~AR~AVAeYl~~~l~--~kl~a~D 128 (447)
T KOG0259|consen 61 KPILPLGHGDPSVYPCFRTSQEAEQAVVDALRS----------GKGNGYAPSVGILPARRAVAEYLNRDLP--NKLTADD 128 (447)
T ss_pred ceeccCCCCCCCccccccCCHHHHHHHHHHHhc----------CCCCCcCCccccHHHHHHHHHHhhcCCC--CccCcCc
Confidence 3789999987643 113333333332211 2346899999999999999999887644 4588999
Q ss_pred EEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCcee
Q 046900 123 IVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVR 202 (442)
Q Consensus 123 i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 202 (442)
|++|+|+++||++++.+|.+||..||+|.|+|+.|...+. ..|.++.++++-++.+|.+|++.+|..+.+ +|.
T Consensus 129 V~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~-~~~lEVR~ydlLPe~~weIDL~~veal~DE------NT~ 201 (447)
T KOG0259|consen 129 VVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAI-YSGLEVRYYDLLPEKDWEIDLDGVEALADE------NTV 201 (447)
T ss_pred eEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhh-hcCceeEeecccCcccceechHHHHHhhcc------Cee
Confidence 9999999999999999999999999999999999998888 499999999998899999999999999876 999
Q ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCC
Q 046900 203 GVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGL 282 (442)
Q Consensus 203 ~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~ 282 (442)
+++++||+||+|.+|+.+.|++|++.|++++++||.||+|.+++|++.+|.++.++... -.||.++|.||.|=.
T Consensus 202 AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssi------VPVitlggisKrW~V 275 (447)
T KOG0259|consen 202 AIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSI------VPVITLGGISKRWIV 275 (447)
T ss_pred EEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhcccc------CceEeeccccccccc
Confidence 99999999999999999999999999999999999999999999999999999988765 578999999999999
Q ss_pred CCceeEEEeecCH-------HHHHHHHHcccc-CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 046900 283 PGFRVGTIYSYND-------KVVTTARRMSSF-TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA- 353 (442)
Q Consensus 283 ~G~RiG~i~~~~~-------~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 353 (442)
||||+||++..++ .+.+.++++... ...+++.|.|+-.+|.... +++.......++.+.+...+.|.+.
T Consensus 276 PGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp--~efF~k~~~~lk~na~l~y~~Lk~IP 353 (447)
T KOG0259|consen 276 PGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTP--EEFFDKKLSFLKSNADLCYSRLKDIP 353 (447)
T ss_pred CCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhCh--HHHHHHHHHHHHhhHHHHHHHHhcCC
Confidence 9999999987432 233344444333 5668899999999998644 6778888999999999999999987
Q ss_pred CCe-eecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHH
Q 046900 354 GIE-CLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHN 432 (442)
Q Consensus 354 g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~ 432 (442)
++. ..+|+|.+|+|+++.-.. -..++++.+++.+|.++..+.+.||..|+. ++|+|++++. +.+.+++++.||++
T Consensus 354 ~l~cp~kPeg~mylmv~l~~s~-~~~~~dD~dFc~kL~~Eesv~~LPG~af~~--~nw~Ri~i~~-~~~~leea~~Rik~ 429 (447)
T KOG0259|consen 354 CLTCPVKPEGCMYLMVKLNLSL-FPDIEDDVDFCQKLAREESVICLPGQAFGL--KNWLRIVITV-EEEMLEEAFSRIKE 429 (447)
T ss_pred CcccCcCCCcceEEEeccchhh-hccccccHHHHHHHhhhcceEEeccccccC--CCeEEEEEcc-ChHHHHHHHHHHHH
Confidence 787 467999999999886431 123446889999999999999999999974 7999999998 88999999999999
Q ss_pred HHHHHHhhc
Q 046900 433 FMQKRERRR 441 (442)
Q Consensus 433 ~l~~~~~~~ 441 (442)
+..+|.+.+
T Consensus 430 Fc~RH~~~~ 438 (447)
T KOG0259|consen 430 FCDRHSKEQ 438 (447)
T ss_pred HHHhhhhcc
Confidence 999988544
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-51 Score=400.51 Aligned_cols=354 Identities=26% Similarity=0.451 Sum_probs=293.4
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEEE
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIVV 125 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~~ 125 (442)
+++|+|+.+.+.++ ++.+.+.+.+.... ....|++..|.++||+++|+|+++.+| ++++++ +|++
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~-----------~~~~Y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~~I~~ 94 (387)
T PRK07683 28 DNLISLTIGQPDFPTPSHVKEAAKRAITE-----------NYTSYTHNAGLLELRKAACNFVKDKYD--LHYSPESEIIV 94 (387)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEEE
Confidence 46799999987654 35555555544321 235798889999999999999998776 557888 9999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++.+++.+++++||.|++++|+|+.+...++. .|++++.+++++ ++|.+|.+.+++.+.+ ++++++
T Consensus 95 t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~-~~~~~~~~~l~~~~~~------~~~~i~ 166 (387)
T PRK07683 95 TIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRL-CGAKPVFIDTRS-TGFRLTAEALENAITE------KTRCVV 166 (387)
T ss_pred eCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHHH-cCCEEEEeecCc-ccCCCCHHHHHHhcCc------CceEEE
Confidence 99999999999999999999999999999999999885 999999999875 4688899999988764 778999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++||||||.+++.+++++|+++|+++|++||+||+|+++.+++. ..++.++.. .++++++++||||.||+||+
T Consensus 167 i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~-----~~~~vi~~~s~SK~~~~pGl 240 (387)
T PRK07683 167 LPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFPE-----MREKTIVINGLSKSHSMTGW 240 (387)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC-cCChhhccC-----CcCCeEEEeeccccccCccc
Confidence 999999999999999999999999999999999999999887653 445555422 24789999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCce
Q 046900 286 RVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG 363 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 363 (442)
|+||++++ +.+.+.+..... ...++++.|.++..++.++. .++++.++.++++++.+.+.|.+.|+.+..+++|
T Consensus 241 RiG~i~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 316 (387)
T PRK07683 241 RIGFLFAP-SYLAKHILKVHQYNVTCASSISQYAALEALTAGK---DDAKMMRHQYKKRRDYVYNRLISMGLDVEKPTGA 316 (387)
T ss_pred eeEEEEcC-HHHHHHHHHHHHhccCCCChHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCee
Confidence 99999995 555555543322 24467789999999997653 3577788999999999999999889888899999
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
+|+|+.++.... ++.+++..+++++||.+.||+.|+...++++||+++. +++++++++++|.+++++..
T Consensus 317 ~~~~~~~~~~~~-----~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~-~~~~~~~al~~l~~~l~~~~ 385 (387)
T PRK07683 317 FYLFPSIGHFTM-----SSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAY-SIETLKEGLDRLEAFLQQKA 385 (387)
T ss_pred EEEEEecccCCC-----CHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhhc
Confidence 999999875211 2567777777777999999999976557899999998 89999999999999987543
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-51 Score=401.18 Aligned_cols=354 Identities=23% Similarity=0.376 Sum_probs=289.2
Q ss_pred Cceeeeeccccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEE
Q 046900 48 SGVIQMGLAENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIV 124 (442)
Q Consensus 48 ~~~i~l~~~~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~ 124 (442)
.++|+|+.+.++.+ .+.++...+... .....|+++.|.++||+++++++++.+| +.++++ +|+
T Consensus 26 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~~i~ 91 (387)
T PRK08912 26 HGAINLGQGFPDDPGPEDVRRAAADALL------------DGSNQYPPMMGLPELRQAVAAHYARFQG--LDLDPETEVM 91 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCcccEE
Confidence 36799998876653 333333222211 1235799999999999999999998776 557888 999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++.+++.+++++||.|++++|+|+.+...++. .|++++.+++++ .+|.+|++.+++.+.. +++++
T Consensus 92 ~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~~~~~~-~~~~~~~~~l~~~~~~------~~~~v 163 (387)
T PRK08912 92 VTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRR-AGGVPRLVRLEP-PHWRLPRAALAAAFSP------RTKAV 163 (387)
T ss_pred EeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHH-cCCEEEEEecCc-ccCcCCHHHHHHHhCc------cceEE
Confidence 999999999999999999999999999999999999985 999999999864 3578999999998764 78899
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
+++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++..+.++.++.. ..+++++++||||.||++|
T Consensus 164 ~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-----~~~~~i~~~S~SK~~g~~G 238 (387)
T PRK08912 164 LLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPG-----MRERTVKIGSAGKIFSLTG 238 (387)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCC-----ccCceEEEeechhhccCcC
Confidence 99999999999999999999999999999999999999999887655556554422 1368999999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA 362 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 362 (442)
+|+||++++ +.+.+.+...... +..++..|.++..++... .+++++.++.++++++.+.+.|++.|+++.+++|
T Consensus 239 lRiG~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~g 314 (387)
T PRK08912 239 WKVGFVCAA-PPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKP---DDYFEGMRADLARSRDRLAAGLRRIGFPVLPSQG 314 (387)
T ss_pred ceeEEEecC-HHHHHHHHHHHhhccccCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc
Confidence 999999994 5566665544332 456677888888777532 3467788999999999999999999999889999
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC--CCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS--EPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~--~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
|+|+|++++.... ..++.++++.+++++||.+.||..|+.. ..+|+||+++. +++.+++++++|++++.+
T Consensus 315 ~~~l~~~l~~~~~---~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~-~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 315 TYFLTVDLAPLGL---AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK-RDATLDEAVERLAAARRR 386 (387)
T ss_pred ceEEEecccccCC---CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHHHHHhc
Confidence 9999999975210 0136788999887779999999999643 35899999998 789999999999988753
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=403.99 Aligned_cols=350 Identities=22% Similarity=0.330 Sum_probs=292.1
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEEE
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIVV 125 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~~ 125 (442)
.++|+|+.+.+.++ ++.+.+.+.+.... ....|++..|.++||+++++++.+.++ ...+++ +|++
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~-----------~~~~Y~~~~G~~~lr~~~a~~l~~~~~--~~~~~~~~i~~ 96 (386)
T PRK09082 30 HGAINLSQGFPDFDGPPYLVEALAYAMAA-----------GHNQYPPMTGVAALREAIAAKTARLYG--RQYDADSEITV 96 (386)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHc-----------CCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEEE
Confidence 46899999887764 34555555443211 135698889999999999999998776 445565 8999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++..++.+++++||+|++++|+|+.+...++. .|++++.++++++ +|.+|++.+++.+++ ++++++
T Consensus 97 t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~-~g~~~~~~~~~~~-~~~~d~~~l~~~~~~------~~~~v~ 168 (386)
T PRK09082 97 TAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIEL-AGGRAVRVALQPP-DFRVDWQRFAAAISP------RTRLII 168 (386)
T ss_pred eCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHHHH-cCCEEEEEecCcc-cccCCHHHHHHhcCc------cceEEE
Confidence 99999999999999999999999999999999999985 8999999999754 588999999998864 788999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.+++.+++++|+++|++|++++|+||+|.++.|++..+.++.++... .+++++++||||.||++|+
T Consensus 169 l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~-----~~~~i~~~S~SK~~~~~G~ 243 (386)
T PRK09082 169 LNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPEL-----RERAFVVSSFGKTYHVTGW 243 (386)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCc-----cCcEEEEeechhhccchhh
Confidence 99999999999999999999999999999999999999999876556676665432 4789999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCce
Q 046900 286 RVGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG 363 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 363 (442)
|+||++++ +.+.+.+++.. ..+.++.+.|.+++.++... .+++++.++.++++++++.+.|++.|+++.+++||
T Consensus 244 RiG~iv~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~g~ 319 (386)
T PRK09082 244 KVGYCVAP-AALSAEFRKVHQYNTFTVNTPAQLALADYLRAE---PEHYLELPAFYQAKRDRFRAALANSRFKLLPCEGT 319 (386)
T ss_pred hhhhhhCC-HHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCee
Confidence 99999995 56666665543 23567899999999998742 34677889999999999999999989999999999
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC--CCCCEEEEEeecCCHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC--SEPGWFRVCFANMSEQTLEVALKRIHN 432 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~--~~~~~iRls~~~~~~e~i~~~l~~l~~ 432 (442)
+|+|+++++..+ .++.++++.|++++||.+.||+.|+. ...+++||+++. +++.+++++++|++
T Consensus 320 ~~~~~~~~~~~~----~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~-~~~~l~~~~~rl~~ 385 (386)
T PRK09082 320 YFQLVDYSAISD----LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK-QEETLDAAAERLCQ 385 (386)
T ss_pred EEEEEeccccCC----CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence 999999975211 13678889888888999999998863 235799999998 89999999999975
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-51 Score=400.68 Aligned_cols=354 Identities=25% Similarity=0.405 Sum_probs=289.6
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
..++|+|+.+++.++ ++.+.+.+.+... .....|++..|.++||+++|+|+++.++ +.+++++|++
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~i~~ 95 (388)
T PRK07337 29 GRDIIHMGIGEPDFTAPEPVVEAAARALR-----------RGVTQYTSALGLAPLREAIAAWYARRFG--LDVAPERIVV 95 (388)
T ss_pred CCCEEEeCCcCCCCCCCHHHHHHHHHHHh-----------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCChHhEEE
Confidence 457899999988764 3445555544321 1235699889999999999999998776 4578999999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++.+++.+++++||.|++++|+|+.+...++. .|++++.+|++.+++|.+|++++++.+.+ ++++++
T Consensus 96 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~ 168 (388)
T PRK07337 96 TAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAA-AEGRPVLVPSGPAERFQLTAADVEAAWGE------RTRGVL 168 (388)
T ss_pred ecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHH-cCCEEEEeecCCccCCcCCHHHHHhhcCc------cceEEE
Confidence 99999999999999999999999999999999988884 89999999998767789999999998764 788999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++||||||.+++.+++++|+++|+++++++|+||+|.++.+.+. +.+...+ .+++++++||||.||+||+
T Consensus 169 l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~--------~~~vi~~~S~SK~~~~~G~ 239 (388)
T PRK07337 169 LASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA-PVSALSL--------GDDVITINSFSKYFNMTGW 239 (388)
T ss_pred EECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-CcChhhc--------cCCEEEEEechhhcCCchh
Confidence 999999999999999999999999999999999999999887653 3343332 2678999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCee-ecCCc
Q 046900 286 RVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIEC-LKGNA 362 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~ 362 (442)
|+||++++ +.+.+.+...... ..++++.|.++..++.+..+ +++++.++.++++|+.+.+.|++.|+.+ ..|++
T Consensus 240 RiG~~~~~-~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~ 316 (388)
T PRK07337 240 RLGWLVVP-EALVGTFEKLAQNLFICASALAQHAALACFEPDTL--AIYERRRAEFKRRRDFIVPALESLGFKVPVMPDG 316 (388)
T ss_pred heeeeecC-HHHHHHHHHHHHHhccCCChHHHHHHHHHhccCch--HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCe
Confidence 99999995 5566655544332 45688999999998875432 3357789999999999999999888765 46899
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC-CCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS-EPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~-~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
|+|+|++++..... ...++.+++..+++++||.|.||+.|+.. ..+|+||+++. +++.+++++++|.+++
T Consensus 317 g~f~~~~~~~~~~~-~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~-~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 317 AFYVYADCRGVAHP-AAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT-SMSRLEEAVARLGKLF 387 (388)
T ss_pred eEEEEEecccccCC-CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC-CHHHHHHHHHHHHHHh
Confidence 99999999753100 00135678888887779999999999753 35899999998 8999999999998865
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=398.35 Aligned_cols=355 Identities=21% Similarity=0.380 Sum_probs=291.6
Q ss_pred ceeeeecccccc-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC-CCcEEEe
Q 046900 49 GVIQMGLAENQV-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD-LNRIVVT 126 (442)
Q Consensus 49 ~~i~l~~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~~~i~~t 126 (442)
++++|+.+++++ +++.+.+++.+.... .....|++..|.+++|+++++++.+.+| +.++ +++|++|
T Consensus 28 ~~~~l~~g~~~~~~~~~~~~a~~~~~~~----------~~~~~Y~~~~G~~~lr~~~~~~l~~~~g--~~~~~~~~i~~t 95 (389)
T PRK05957 28 GTISLGQGVVSYPPPPEAIEALNNFLAN----------PENHKYQAVQGIPPLLEAITQKLQQDNG--IELNNEQAIVVT 95 (389)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhC----------CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCeEEEe
Confidence 578999999876 345566665543211 1235798899999999999999998776 4455 6789999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+|+++++..++.+++++||.|++++|+|..+...++. .|++++.++.+. +|.+|++++++.+++ ++|++++
T Consensus 96 ~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~-~g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~klv~~ 166 (389)
T PRK05957 96 AGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITM-AGCQPILVPTDD--NYQLQPEAIEQAITP------KTRAIVT 166 (389)
T ss_pred CChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHh-cCCEEEEeecCC--CCCcCHHHHHHhcCc------CceEEEE
Confidence 9999999999999999999999999999999888774 899999999863 578999999998864 7899999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
++||||||.++|.+++++|+++|+++|++||+||+|.++.|++....+...+.. ..+++|+++||||.||++|+|
T Consensus 167 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~-----~~~~~i~~~S~SK~~g~~GlR 241 (389)
T PRK05957 167 ISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPG-----SGNHTISLYSLSKAYGFASWR 241 (389)
T ss_pred eCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCC-----ccCcEEEEecchhhccCccce
Confidence 999999999999999999999999999999999999999887544445444422 247899999999999999999
Q ss_pred eEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-C-CeeecCCc
Q 046900 287 VGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-G-IECLKGNA 362 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g-~~~~~~~~ 362 (442)
+||+++ ++.+.+.+...... ...+.+.|.++..+++++. .++++.++.++++|+.+.+.|++. + +.+.+++|
T Consensus 242 iG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~g 317 (389)
T PRK05957 242 IGYMVI-PIHLLEAIKKIQDTILICPPVVSQYAALGALQVGK---SYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANG 317 (389)
T ss_pred eEEEec-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCe
Confidence 999999 45666666654433 3456789999999997642 235566677899999999999876 4 36778999
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
|+|+|++++... ++.+++++|++++||.+.||+.|+...++|+||+++..+++++++++++|.+.++++.+
T Consensus 318 g~~~~~~~~~~~------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~~~~ 388 (389)
T PRK05957 318 AFYCFLKVNTDL------NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLKTIVQ 388 (389)
T ss_pred eEEEEEeCCCCC------ChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHHhhhc
Confidence 999999997543 36789999987779999999999765567999999866899999999999999887643
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=409.12 Aligned_cols=340 Identities=20% Similarity=0.279 Sum_probs=279.8
Q ss_pred CceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
..+++|+.+.+..+. +.+.+.+.+.. .....|+++.|.++||+++++|+++..+ .+++|++|
T Consensus 85 ~~~i~L~~g~p~~~~~p~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~-----~~~~Iiit 147 (431)
T PRK15481 85 TPLHDLAGGNPDPQRLPDLSRYFARLS------------RTPRLYGDAPVSPELHAWAARWLRDDCP-----VAFEIDLT 147 (431)
T ss_pred chhhhhhcCCCChhHhHHHHHHHHHhh------------hhhhhcCCcCCCHHHHHHHHHHHhhccC-----CcCeEEEe
Confidence 356888887654432 44455444432 1235799999999999999999985321 35699999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+|+++++.+++.+++++||.|++++|+|+.|...++. .|++++.+|+++++ +|++.|++++++ ++|++++
T Consensus 148 ~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~~-~g~~~~~v~~~~~g---~~~~~l~~~~~~------~~k~i~~ 217 (431)
T PRK15481 148 SGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLRY-AGFSASPVSVDAEG---MQPEKLERALAQ------GARAVIL 217 (431)
T ss_pred cCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHH-cCCeEEeeccCCCC---CCHHHHHHHHhc------CCCEEEE
Confidence 9999999999999999999999999999999999995 99999999997543 789999998864 6788888
Q ss_pred e-CCCCCCCcCCCHHHHHHHHHHHHhc-CcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 207 T-NPSNPLGATIQRSVLEELLDFATRK-NIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 207 ~-~P~NPtG~~~~~~~l~~l~~~~~~~-~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
+ |||||||.++|.+++++|+++|+++ +++||+||+|.++.+++ ..+.... ..+++++++||||.|| ||
T Consensus 218 ~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~--~~~~~~~-------~~~~vi~~~SfSK~~~-~G 287 (431)
T PRK15481 218 TPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSP--YHSVIPQ-------TTQRWALIRSVSKALG-PD 287 (431)
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCC--CCCCCcC-------CCCCEEEEeeeccccC-CC
Confidence 7 9999999999999999999999999 99999999999987643 2222111 1368999999999999 99
Q ss_pred ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA 362 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 362 (442)
+|+||++++ +.+.+.+...... +.++.++|.++..+|+++++ .+|++++++.++++|+.+.+.|++.|+.+..|++
T Consensus 288 lRiG~~i~~-~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~p~g 365 (431)
T PRK15481 288 LRLAFVASD-SATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEY-QARLAQARLFYAQRRQKLARALQQYGIAIPSPGD 365 (431)
T ss_pred ceeEEEeCC-HHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccH-HHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Confidence 999999994 5566655543332 45789999999999998765 6788999999999999999999998888878999
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCC-CCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSE-PGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~-~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
|+|+|++++. +..++++.|.++ ||.+.||+.|+... .+++||+++..+++++++++++|++++.
T Consensus 366 g~f~~~~l~~--------~~~~~~~~l~~~-gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 366 GLNLWLPLDT--------DSQATALTLAKS-GWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN 430 (431)
T ss_pred eEEEEEECCC--------CHHHHHHHHHHC-CcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 9999999975 246778887665 99999999996432 4689999997789999999999998864
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-51 Score=398.15 Aligned_cols=358 Identities=22% Similarity=0.322 Sum_probs=293.6
Q ss_pred hhhhhhcCCCCCCCCCCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHH
Q 046900 32 GWKAYDENPYEESTNPSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQ 110 (442)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~ 110 (442)
.|-...+..-..+...+++++|+++++.++. +.+....+... ....+|++..|.++||++||++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~~~~ 77 (373)
T PRK07324 10 EWLNVYEKSATYDIAESCIDSLTLEELLALAGKNPEAFYQELG------------QKKLTYGWIEGSPEFKEAVASLYQN 77 (373)
T ss_pred HHHHHhhccCccccccCCCCCCcHHHHHhccCcchHHHHHHHh------------cCCccCCCCCCCHHHHHHHHHHhcC
Confidence 3433333333334456789999999875532 22322222221 1134799989999999999999852
Q ss_pred HhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHH
Q 046900 111 IRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAA 190 (442)
Q Consensus 111 ~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~ 190 (442)
+++++|++|+|+++++.+++.+++++||+|+++.|+|+.+...++. .|++++.+|++.+++|.+|++.+++.
T Consensus 78 -------~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~-~g~~v~~v~~~~~~~~~~d~~~l~~~ 149 (373)
T PRK07324 78 -------VKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLYDIPES-LGAEVDYWQLKEENGWLPDLDELRRL 149 (373)
T ss_pred -------CChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHH-cCCEEEEEecccccCCCCCHHHHHHh
Confidence 6789999999999999999999999999999999999999988884 99999999998877899999999887
Q ss_pred HHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcE
Q 046900 191 YKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERV 270 (442)
Q Consensus 191 l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~v 270 (442)
+++ ++|++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++. +.++.+. .+++
T Consensus 150 ~~~------~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~-~~s~~~~--------~~~~ 214 (373)
T PRK07324 150 VRP------NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGS-TPSIADL--------YEKG 214 (373)
T ss_pred CCC------CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC-CCChhhc--------cCCE
Confidence 754 789999999999999999999999999999999999999999999887643 4455433 3678
Q ss_pred EEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH
Q 046900 271 HIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIE 348 (442)
Q Consensus 271 i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 348 (442)
|+++||||.||++|+|+||+++ ++.+.+.+++.... ...+.++|.++..+++.. +++++++++.++++++.+.+
T Consensus 215 I~~~s~SK~~~~~G~RiG~i~~-~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~---~~~l~~~~~~~~~~~~~l~~ 290 (373)
T PRK07324 215 ISTNSMSKTYSLPGIRVGWIAA-NEEVIDILRKYRDYTMICAGVFDDMLASLALEHR---DAILERNRKIVRTNLAILDE 290 (373)
T ss_pred EEEecchhhcCCccceeEEEec-CHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCH---HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 57777777665543 456778999888888742 55788889999999999999
Q ss_pred HHHhC-CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHH
Q 046900 349 GLRSA-GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVAL 427 (442)
Q Consensus 349 ~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l 427 (442)
.|.+. ++.+..|.+|+|+|+.++... +..+++++|++++||.|.||+.|+. ++|+||+++. +++.+++++
T Consensus 291 ~l~~~~~~~~~~p~gg~~~~i~~~~~~------~~~~~~~~ll~~~gv~v~pg~~F~~--~~~iRis~~~-~~~~l~~~l 361 (373)
T PRK07324 291 WVAKEPRVSYVKPKAVSTSFVKLDVDM------PSEDFCLKLLKETGVLLVPGNRFDL--EGHVRIGYCC-DTETLKKGL 361 (373)
T ss_pred HHhcCCCceEECCCceEEEEEEeCCCC------CHHHHHHHHHHhcCEEEECccccCC--CCeEEEEecC-CHHHHHHHH
Confidence 99876 788888999999898887532 3678899988878999999999963 5799999998 789999999
Q ss_pred HHHHHHHHHH
Q 046900 428 KRIHNFMQKR 437 (442)
Q Consensus 428 ~~l~~~l~~~ 437 (442)
++|+++++++
T Consensus 362 ~rl~~~l~~~ 371 (373)
T PRK07324 362 KKLSEFLREF 371 (373)
T ss_pred HHHHHHHHhc
Confidence 9999999875
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=399.31 Aligned_cols=360 Identities=23% Similarity=0.368 Sum_probs=282.9
Q ss_pred CCceeeeecccc-c--c-cHH-HHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 47 PSGVIQMGLAEN-Q--V-SFD-LLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 47 ~~~~i~l~~~~n-~--~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
+.++|+|+.+.+ + + +++ .++...+... ....|+++.|.++||+++|+|+.+... .+++++
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~-------------~~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~~ 96 (404)
T PRK09265 32 GHKILKLNIGNPAPFGFEAPDEILRDVIRNLP-------------TAQGYSDSKGLFSARKAIMQYYQQKGI--PDVDVD 96 (404)
T ss_pred CCCeEEecCCCCCcCCCCCCHHHHHHHHHHhh-------------cCCCCCCCCCcHHHHHHHHHHHhccCC--CCCCcc
Confidence 347899998643 2 2 223 3333332221 235799999999999999999975422 357899
Q ss_pred cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCce
Q 046900 122 RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (442)
+|++|+|+++++.+++.+++++||+|++++|+|+.+...+.. .|++++.++++.+++|.+|++.+++.+.+ ++
T Consensus 97 ~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~ 169 (404)
T PRK09265 97 DIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSL-SGGKPVHYLCDEEAGWFPDLDDIRSKITP------RT 169 (404)
T ss_pred cEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHH-cCCEEEEEecccccCCCCCHHHHHHhccc------cc
Confidence 999999999999999999999999999999999999998884 89999999987666788999999998754 78
Q ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC
Q 046900 202 RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG 281 (442)
Q Consensus 202 ~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g 281 (442)
++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++..+.. ..++++++||||.||
T Consensus 170 ~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~------~~~vi~~~S~SK~~~ 243 (404)
T PRK09265 170 KAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAP------DLLCVTFNGLSKAYR 243 (404)
T ss_pred eEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCC------CceEEEEecchhhcc
Confidence 89999999999999999999999999999999999999999999887766667766543 257899999999999
Q ss_pred CCCceeEEEeec-CHH----HHHHHHHcc-ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Q 046900 282 LPGFRVGTIYSY-NDK----VVTTARRMS-SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-G 354 (442)
Q Consensus 282 ~~G~RiG~i~~~-~~~----~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 354 (442)
+||+|+||++++ ++. +.+.+.... ..+.++.++|.++..+|.+.++..++++. ++.+.++|+.+.+.|+++ |
T Consensus 244 ~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~r~~~~~~L~~~~~ 322 (404)
T PRK09265 244 VAGFRVGWMVLSGPKKHAKGYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILP-GGRLYEQRDRAWELLNAIPG 322 (404)
T ss_pred CcccceEEEEEeCchHHHHHHHHHHHHHhccccCCCcHHHHHHHHHhcCchhHHHHHHH-HHHHHHHHHHHHHHHhcCCC
Confidence 999999999963 332 233333222 22567889999999999765443333333 356778899999999887 8
Q ss_pred CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 355 IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 355 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
+++..|++|+|+|++++.... ...+..+++..+++++||.+.||+.|+...++|+||+++. +++++++++++|++++
T Consensus 323 ~~~~~p~~g~~l~~~~~~~~~--~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~-~~e~l~~~l~rl~~~l 399 (404)
T PRK09265 323 VSCVKPKGALYAFPKLDPKVY--PIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLP-RVDDLEEAIGRIGRFL 399 (404)
T ss_pred CcccCCCcceEEEEEeccccc--CCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCC-CHHHHHHHHHHHHHHH
Confidence 888889999999999875311 0011334444555666999999999975567899999976 8999999999999998
Q ss_pred HHHH
Q 046900 435 QKRE 438 (442)
Q Consensus 435 ~~~~ 438 (442)
+++.
T Consensus 400 ~~~~ 403 (404)
T PRK09265 400 SGYR 403 (404)
T ss_pred HHhc
Confidence 8654
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=398.60 Aligned_cols=360 Identities=23% Similarity=0.381 Sum_probs=293.8
Q ss_pred CCceeeeeccccc-----ccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 47 PSGVIQMGLAENQ-----VSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 47 ~~~~i~l~~~~n~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
..++|+|+.+.+. .+.+.+.+.+.+.... .....|++..|..++|+++++|++..++ +.++++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~~ 97 (403)
T TIGR01265 30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRS----------GKFNGYAPSVGALAAREAVAEYLSSDLP--GKLTAD 97 (403)
T ss_pred CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhc----------CCCCCCCCCCCCHHHHHHHHHHHHhhcC--CCCCHH
Confidence 4678999998763 2345555555443211 1124688889999999999999997655 456789
Q ss_pred cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCce
Q 046900 122 RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (442)
+|++|+|+++++.+++.+++++||+|+++.|+|+.+...+.. .|++++.++++.+++|.+|++.+++.+.+ ++
T Consensus 98 ~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~ 170 (403)
T TIGR01265 98 DVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAF-SGLEVRLYDLLPEKDWEIDLDGLEALADE------KT 170 (403)
T ss_pred HEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHH-cCCEEEEecCCcccCCccCHHHHHHHhCc------Cc
Confidence 999999999999999999999999999999999999888884 89999999987666788999999988764 67
Q ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC
Q 046900 202 RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG 281 (442)
Q Consensus 202 ~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g 281 (442)
+++++++||||||.+++.+++++|+++|+++|++||+||+|+++.+++..+.++.++.. ..++|+++||||.|+
T Consensus 171 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~------~~~vi~~~S~SK~~~ 244 (403)
T TIGR01265 171 VAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFAS------IVPVLSLGGISKRWV 244 (403)
T ss_pred cEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhcc------CCcEEEEeecccccC
Confidence 89999999999999999999999999999999999999999999987766667776654 257999999999999
Q ss_pred CCCceeEEEeecCH--H----HHHHHHHccc-cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 046900 282 LPGFRVGTIYSYND--K----VVTTARRMSS-FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA- 353 (442)
Q Consensus 282 ~~G~RiG~i~~~~~--~----~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 353 (442)
+||+|+||++++++ . +.+.+..... .+.++.++|.++.+++.+.. ..++++.++.++++++.+.+.|+..
T Consensus 245 ~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~ 322 (403)
T TIGR01265 245 VPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRILGPATIVQGALPDILENTP--QEFFDGKISVLKSNAELCYEELKDIP 322 (403)
T ss_pred CCcceEEEEEEeCchhhhHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999998532 1 3333333332 35678899999999997632 5678889999999999999999887
Q ss_pred CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHH
Q 046900 354 GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 354 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~ 433 (442)
|+.+..|.+|+|+|++++.... .+..++.+++..+++++||.|.||+.|+ .++|+||+++. +++.+++++++|+++
T Consensus 323 ~~~~~~p~~g~f~~~~~~~~~~-~~~~~~~~~~~~l~~~~gv~v~pg~~f~--~~~~iRis~~~-~~~~l~~~l~~l~~~ 398 (403)
T TIGR01265 323 GLVCPKPEGAMYLMVKLELELF-PEIKDDVDFCEKLVREESVICLPGSAFG--LPNWVRITITV-PESMLEEACSRIKEF 398 (403)
T ss_pred CceecCCCceeEEEEecccccc-CCCCCHHHHHHHHHHhCCEEEeCccccC--CCCeEEEEecC-CHHHHHHHHHHHHHH
Confidence 7877789999999999975310 0011356888888777799999999996 36899999997 788999999999999
Q ss_pred HHHH
Q 046900 434 MQKR 437 (442)
Q Consensus 434 l~~~ 437 (442)
++++
T Consensus 399 ~~~~ 402 (403)
T TIGR01265 399 CERH 402 (403)
T ss_pred HHhc
Confidence 8664
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-50 Score=394.47 Aligned_cols=357 Identities=19% Similarity=0.326 Sum_probs=290.1
Q ss_pred CCceeeeeccccccc-HH-HHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cE
Q 046900 47 PSGVIQMGLAENQVS-FD-LLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RI 123 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i 123 (442)
+.++|+|+.+.+... ++ ......+.... .....|+++.|.++||+++++|+++++| +.++++ +|
T Consensus 28 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~i 94 (395)
T PRK08175 28 GEDIIDFSMGNPDGPTPPHIVEKLCEVAQR-----------PDTHGYSTSRGIPRLRRAISRWYQDRYD--VDIDPESEA 94 (395)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhC-----------CCcCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcE
Confidence 457789998765432 22 33333332211 1246799999999999999999998776 557777 79
Q ss_pred EEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 124 VVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 124 ~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
++|+|+++++..++..++++||+|++++|+|+.+...+.. .|++++.++++++++ +.+.++++++.. ..++++
T Consensus 95 ~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~-~g~~~~~v~~~~~~~---~~~~l~~~l~~~---~~~~~~ 167 (395)
T PRK08175 95 IVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVI-AGAQVRSVPLVEGVD---FFNELERAIRES---YPKPKM 167 (395)
T ss_pred EEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHH-cCCeEEEEecccCCC---cHHHHHHHHhhc---cCCceE
Confidence 9999999999999999999999999999999999888884 899999999986553 368888877642 236889
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
+++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++....++.++.. ..+++++++||||.||+|
T Consensus 168 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~-----~~~~~i~~~S~SK~~g~p 242 (395)
T PRK08175 168 MILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPG-----AKDVAVEFFTLSKSYNMA 242 (395)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCC-----cccCEEEEeeccccccCc
Confidence 999999999999999999999999999999999999999999887655556655432 136788999999999999
Q ss_pred CceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC
Q 046900 284 GFRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN 361 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 361 (442)
|+|+||+++ ++.+.+.+.+... .+.++++.|.++..++... +++++++++.++++++++.+.|++.|+.+..|.
T Consensus 243 GlRiG~~~~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~ 318 (395)
T PRK08175 243 GWRIGFMVG-NPELVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPK 318 (395)
T ss_pred chhheeeeC-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 999999998 5666666665443 2456777899888888653 457888999999999999999999998888889
Q ss_pred ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 362 AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 362 ~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
+|+|+|++++..... .++.+++.++++++||.|.||+.|+..+++++||+++. +++.+++++++|++++.+
T Consensus 319 ~g~~i~i~l~~~~~~---~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~-~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 319 ASMYVWAKIPEPYAA---MGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIE-NRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred EEEEEEEECCcccCC---CCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHHHHh
Confidence 999999999864311 12578888888777999999999976666899999986 899999999999999875
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-50 Score=395.35 Aligned_cols=355 Identities=23% Similarity=0.431 Sum_probs=294.2
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.++|+|+.+.++++ ++.+.+.+.+.. .....|++..|.+++|+++++++.+ ++ +++++++|++|
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~a~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~-~~--~~~~~~~i~~t 94 (397)
T PRK07568 30 IKVYHLNIGQPDIKTPEVFFEAIKNYD------------EEVLAYSHSQGIPELREAFAKYYKK-WG--IDVEPDEILIT 94 (397)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHh------------cCCcCcCCCCCCHHHHHHHHHHHHH-hC--CCCCcceEEEc
Confidence 46899999988763 355555555432 1245799999999999999999984 44 55789999999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcC-CHHHHHHHHHHHHhcCCceeEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQI-TPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~-d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
+|+++++.+++.+++++||.|++++|+|..+...++. .|++++.++++.+++|.+ +++.+++++++ ++++|+
T Consensus 95 ~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~------~~~~v~ 167 (397)
T PRK07568 95 NGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATS-AGVKIVPVTTKIEEGFHLPSKEEIEKLITP------KTKAIL 167 (397)
T ss_pred CChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHHH-cCCEEEEeecCcccCCCCCCHHHHHHhcCc------cceEEE
Confidence 9999999999999999999999999999999888874 899999999875556664 57899888764 788999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++.++... .+++++++||||.||++|+
T Consensus 168 i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~-----~~~~i~~~S~SK~~~~~G~ 242 (397)
T PRK07568 168 ISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGL-----EDRVIIIDSVSKRYSACGA 242 (397)
T ss_pred EECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCC-----cCCEEEEecchhhccCCCc
Confidence 99999999999999999999999999999999999999998876556666655331 4789999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccc-cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCce
Q 046900 286 RVGTIYSYNDKVVTTARRMSS-FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAG 363 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g 363 (442)
|+||++++++.+.+.+.+... .+..+.+.|.++..+++.. +.++++.++.++++++.+.+.|++. |+.+..|+||
T Consensus 243 R~G~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~ 319 (397)
T PRK07568 243 RIGCLISKNKELIAAAMKLCQARLSPPTLEQIGAAALLDTP---ESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGA 319 (397)
T ss_pred ceEEEecCCHHHHHHHHHHhhccCCCCcHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcc
Confidence 999999866666665543322 3567889999999999763 3568888999999999999999887 7888889999
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHc-----CcEEEeCCCCCCCC---CCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHE-----VKLNISPGSSCHCS---EPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~gi~v~pg~~f~~~---~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
+|+|++++.. ++.++++.++++ +||.+.||+.|+.. ..+++||+++. +++++++++++|.++++
T Consensus 320 ~~~~~~l~~~-------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~-~~~~~~~~~~~l~~~l~ 391 (397)
T PRK07568 320 FYIIAKLPVD-------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVL-NEEDLKRAMEILKEALE 391 (397)
T ss_pred eEEEEecCCC-------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHHHH
Confidence 9999999752 256788888764 59999999998532 24799999986 78999999999999999
Q ss_pred HHHhh
Q 046900 436 KRERR 440 (442)
Q Consensus 436 ~~~~~ 440 (442)
++..|
T Consensus 392 ~~~~~ 396 (397)
T PRK07568 392 KYNKR 396 (397)
T ss_pred Hhhcc
Confidence 88755
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-50 Score=395.29 Aligned_cols=355 Identities=23% Similarity=0.374 Sum_probs=288.0
Q ss_pred CCceeeeecccc---cc-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCc
Q 046900 47 PSGVIQMGLAEN---QV-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR 122 (442)
Q Consensus 47 ~~~~i~l~~~~n---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~ 122 (442)
+.++|+|+.+.+ .+ +++.+.+.+.+.... ....|++..|.++||+++++|+++.+| +.+++++
T Consensus 29 ~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~-----------~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~ 95 (398)
T PRK08363 29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKE-----------GHNYYGPSEGLPELREAIVKREKRKNG--VDITPDD 95 (398)
T ss_pred CCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHc-----------CCCCCCCCCCcHHHHHHHHHHHHHhcC--CCCChhh
Confidence 458899999987 34 445555555543211 124688888999999999999998766 5678999
Q ss_pred EEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEE-ecCCCCCCcCCHHHHHHHHHHHHhcCCce
Q 046900 123 IVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPI-HCDSSNNFQITPQALEAAYKEAESKDMRV 201 (442)
Q Consensus 123 i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v-~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (442)
|++|+|+++++.+++.+++++||.|++++|+|+.+...+.. .|.+++.+ +.+ +.+|.+|++.+++.+.+ ++
T Consensus 96 i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~v~~~~~~-~~~~~~d~~~l~~~~~~------~~ 167 (398)
T PRK08363 96 VRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKF-YGGVPVEYRTIE-EEGWQPDIDDIRKKITE------KT 167 (398)
T ss_pred EEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHH-cCCEEEEecccc-ccCCcCCHHHHHhhCCc------ce
Confidence 99999999999999999999999999999999999998884 89998888 444 35688999999988754 78
Q ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC
Q 046900 202 RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG 281 (442)
Q Consensus 202 ~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g 281 (442)
++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++ .+.++..+.. ..++++++||||.|+
T Consensus 168 ~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~-~~~~~~~~~~------~~~vi~~~SfSK~~~ 240 (398)
T PRK08363 168 KAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEG-KHVSPGSLTK------DVPVIVMNGLSKVYF 240 (398)
T ss_pred EEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCC-cccCHHHcCc------CCcEEEEecchhccC
Confidence 999999999999999999999999999999999999999999988865 3445555543 368999999999999
Q ss_pred CCCceeEEEee-cCHHHHHHHHH----cc-ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Q 046900 282 LPGFRVGTIYS-YNDKVVTTARR----MS-SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-G 354 (442)
Q Consensus 282 ~~G~RiG~i~~-~~~~~~~~~~~----~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 354 (442)
+||+|+||+++ .++.+.+.+.. .. ..+.++.++|.++..++.+. .+++++.++.++++++.+.+.|.+. +
T Consensus 241 ~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~l~~~~~~~~~~~~~l~~~L~~~~~ 317 (398)
T PRK08363 241 ATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGP---MDYLEEYMKKLKERRDYIYKRLNEIPG 317 (398)
T ss_pred CccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999997 33433333221 11 12567889999999988752 4568888999999999999999887 7
Q ss_pred CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 355 IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 355 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
+.+..|+||||+|++++.... .+..+++..+++++||.+.||+.|+...++|+||+++. +++++++++++|++++
T Consensus 318 ~~~~~p~g~~~~~~~l~~~~~----~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~~ 392 (398)
T PRK08363 318 ISTTKPQGAFYIFPRIEEGPW----KDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLP-PVEILEEAMDRFEEFM 392 (398)
T ss_pred CEecCCCeEEEEEEEeccCCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHH
Confidence 888889999999998876210 02456666766777999999999976556899999986 8899999999999988
Q ss_pred HHH
Q 046900 435 QKR 437 (442)
Q Consensus 435 ~~~ 437 (442)
++.
T Consensus 393 ~~~ 395 (398)
T PRK08363 393 RER 395 (398)
T ss_pred HHh
Confidence 764
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-50 Score=392.93 Aligned_cols=352 Identities=22% Similarity=0.313 Sum_probs=288.5
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|+|+.++++++ .+.+.+.+.+.... .....|++..|.++||+++++++++.+| ..+++++|++
T Consensus 28 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~~ 95 (386)
T PRK07550 28 DGPLIDLSQAVPGYPPPPELLRALAEAAAD----------PAAHLYGPVEGLPELREAYAAHYSRLYG--AAISPEQVHI 95 (386)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhC----------cCCcCCCCCCCCHHHHHHHHHHHHHHhC--CCCCcceEEE
Confidence 446799999998764 35555555543211 1245798889999999999999998876 4578899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++..++.+++++||.|+++.|+|+.+...++. .|++++.++++++++|.+|++.+++.+++ ++++++
T Consensus 96 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~~~l~~~~~~------~~~~v~ 168 (386)
T PRK07550 96 TSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDM-LGIRPVYLPCDEGPGLLPDPAAAEALITP------RTRAIA 168 (386)
T ss_pred ecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHh-cCCEEEEEecCCCcCCCCCHHHHHHHhcc------cCcEEE
Confidence 99999999999999999999999999999999988884 99999999998767888999999998875 788999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++||||||.++|.+++++|+++|+++|++||+||+|+++.++.....+...... ..+++++++||||.+|++|+
T Consensus 169 ~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~-----~~~~~i~~~S~SK~~g~~G~ 243 (386)
T PRK07550 169 LVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPD-----WDDTLVHLYSFSKSYALTGH 243 (386)
T ss_pred EeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCC-----ccccEEEEecchhhccCccc
Confidence 9999999999999999999999999999999999999998765433333332211 13689999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCc
Q 046900 286 RVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNA 362 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 362 (442)
|+||++++ +.+...+...... ..++.++|.++..++.+ .++|+++.++.++++++.+.+.|.+. ++.+ .+.+
T Consensus 244 RiG~i~~~-~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~g 318 (386)
T PRK07550 244 RVGAVVAS-PARIAEIEKFMDTVAICAPRIGQIAVAWGLPN---LADWRAGNRAEIARRRDAFRAVFARLPGWEL-LASG 318 (386)
T ss_pred ceEeeecC-HHHHHHHHHHHhhcccCCCcHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHhCCCcee-CCCc
Confidence 99999995 5555554443322 44678899999999975 35678888999999999999999886 6654 4678
Q ss_pred eEEEEEecCC-cccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSP-LLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 363 g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~ 433 (442)
|+|+|++++. .. ++.++++.|++++||.|.||+.|+...++++||+++..+++++++++++|+++
T Consensus 319 ~~~~~~~~~~~~~------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 319 AYFAYVRHPFPDR------PSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred eEEEEecCCCCCC------CHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 9999999875 22 36788998887779999999999755568999999976889999999999875
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=401.68 Aligned_cols=356 Identities=20% Similarity=0.289 Sum_probs=274.8
Q ss_pred ceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHH-HhCCCCccC-CCcEEE
Q 046900 49 GVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQ-IRGGRAKFD-LNRIVV 125 (442)
Q Consensus 49 ~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~-~~~~~~~~~-~~~i~~ 125 (442)
++|+|+.+++.++. +.+.++..... ..+|+++.|.++||++|++++.+ .++...... .++|++
T Consensus 101 ~~i~l~~g~p~~~~~~~v~e~~~~~~--------------~~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~v 166 (527)
T PRK09275 101 DAVSYVRDQLGFDADEFVYELVDGII--------------GDNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFA 166 (527)
T ss_pred HHHhhcCCCCCCCCCHHHHHHHHHHh--------------cCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEE
Confidence 57899999887754 45555444331 12599999999999999995544 333221111 348999
Q ss_pred ecChHHHHHHHHHh-----hcCCCCeEEEcCCCCcChHHhHhhhc--CcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcC
Q 046900 126 TAGATAANELLTFI-----LADPGDALLVPTPYYPGFDRDLRWRT--GIKIVPIHCDSSNNFQITPQALEAAYKEAESKD 198 (442)
Q Consensus 126 t~G~~~ai~~~~~~-----l~~~gd~Vl~~~p~y~~~~~~~~~~~--G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 198 (442)
|+|+++++..++.+ +++|||.|++++|+|+.|...+.. . |+++++++.+++++|++|++.+++++.+
T Consensus 167 T~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l-~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~----- 240 (527)
T PRK09275 167 VEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPEL-PRYDLEVVHINADEENEWQYPDSELEKLRDP----- 240 (527)
T ss_pred eCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHH-cCCCeEEEEeecCcccCCCCCHHHHHhhcCC-----
Confidence 99999999999886 689999999999999999988774 4 5677777777777899999999987654
Q ss_pred CceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHh--cCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecC
Q 046900 199 MRVRGVLITNPSNPLGATIQRSVLEELLDFATR--KNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSL 276 (442)
Q Consensus 199 ~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~--~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~ 276 (442)
++|+++++|||||||.+++.+++++|+++|++ ++++||+||+|.++.+ .+.++.... ++++|+++||
T Consensus 241 -~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~s~~~~~-------~~~~I~v~Sf 309 (527)
T PRK09275 241 -SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD---DFRSLFAVL-------PYNTILVYSF 309 (527)
T ss_pred -CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc---cccCHHHhC-------CCCEEEEeeh
Confidence 88999999999999999999999999999964 4999999999999764 344554442 3789999999
Q ss_pred cccCCCCCceeEEEeecCHHHHHH----H--------------------------------HHcc--ccCCCcHHHHHH-
Q 046900 277 SKDLGLPGFRVGTIYSYNDKVVTT----A--------------------------------RRMS--SFTLISSQTQYL- 317 (442)
Q Consensus 277 SK~~g~~G~RiG~i~~~~~~~~~~----~--------------------------------~~~~--~~~~~s~~~q~~- 317 (442)
||.||++|||+||++++++.+.+. + ++.. ...+.+++.|.+
T Consensus 310 SK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~ 389 (527)
T PRK09275 310 SKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQM 389 (527)
T ss_pred hhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHH
Confidence 999999999999999976532211 1 1111 124567777776
Q ss_pred ----HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCccc---ccC-------hhhHH
Q 046900 318 ----LASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLE---EQT-------REGEL 383 (442)
Q Consensus 318 ----~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~---~~~-------~~~~~ 383 (442)
+.+++... +++++++++.+++||+.+.+.|. .++...+|+|+||+|++++.... +.. ..+..
T Consensus 390 al~~~~all~~~---~~~~~~~~~~~~~Rr~~l~~~Lg-~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~ 465 (527)
T PRK09275 390 ALFSLFALLDEE---DAYKKAMKDIIRRRYKALYEGLG-LPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPV 465 (527)
T ss_pred HHHHHHHHHhCc---hHHHHHHHHHHHHHHHHHHHHcC-CCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHH
Confidence 23445432 45788899999999999998882 23344579999999999975321 000 11368
Q ss_pred HHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 384 ALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 384 ~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
+++.+|++++||.+.||+.|+. ..+++|||+++++++++.+++++|++++.++...
T Consensus 466 ~f~~~Ll~e~gV~v~PG~~Fg~-~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y~~~ 521 (527)
T PRK09275 466 DLLFRLAEETGVVLLPGGGFGG-PEWSVRVSLANLNEEDYAKIGKAIRKLLDEYYEE 521 (527)
T ss_pred HHHHHHHhcCCEEEeCchhhCC-CCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999975 4678999999778999999999999999887653
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-50 Score=395.71 Aligned_cols=349 Identities=20% Similarity=0.273 Sum_probs=274.9
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
..++|+|+.++++++ ++.+.+.+.+...... .......|++..|.++||+++|+++.+. .+++++|++
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~~Y~p~~g~~~lr~aia~~~~~~-----~~~~d~I~i 100 (402)
T TIGR03542 32 SADIIRLGIGDTTQPLPASVIEAFHNAVDELA------SEETFRGYGPEQGYPFLREAIAENDYRG-----RIDPEEIFI 100 (402)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhccc------ccccccCCCCCCCCHHHHHHHHHHHHhc-----CCCHHHEEE
Confidence 457899999998764 3444444443321100 0012356988889999999999986431 278999999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCc-----------EEEEEecCCCCCCcCCHHHHHHHHHHH
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGI-----------KIVPIHCDSSNNFQITPQALEAAYKEA 194 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~-----------~v~~v~~~~~~~~~~d~~~l~~~l~~~ 194 (442)
|+|+++++..++ .++.+||.|++++|+|+.|...++. .|+ ++++++++++++|.+|.+..
T Consensus 101 t~Ga~~al~~l~-~l~~~gd~Vlv~~P~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------- 171 (402)
T TIGR03542 101 SDGAKCDVFRLQ-SLFGSDNTVAVQDPVYPAYVDSNVM-AGRAGVLDDDGRYSKITYLPCTKENNFIPDLPEE------- 171 (402)
T ss_pred CCCcHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHH-cCCccccccccccceEEEeecchhhCCCCCcccc-------
Confidence 999999999875 5568999999999999999999985 899 99999987666777664321
Q ss_pred HhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEe
Q 046900 195 ESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVY 274 (442)
Q Consensus 195 ~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~ 274 (442)
.+++++++||||||||.++|.+++++|+++|++++++||+||+|.+|.+++..+.++..+... .+++|+++
T Consensus 172 ----~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~-----~~~vi~~~ 242 (402)
T TIGR03542 172 ----PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGA-----KECAIEFR 242 (402)
T ss_pred ----CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCC-----cccEEEEe
Confidence 268899999999999999999999999999999999999999999988765434455444321 36899999
Q ss_pred cCcccCCCCCceeEEEeecCHHH-------HHHHH-Hc-cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 046900 275 SLSKDLGLPGFRVGTIYSYNDKV-------VTTAR-RM-SSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQM 345 (442)
Q Consensus 275 S~SK~~g~~G~RiG~i~~~~~~~-------~~~~~-~~-~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (442)
||||.||+||+|+||++++++.+ ...+. .. ...+.++.++|.++..++.+..+ +++++.++.++++++.
T Consensus 243 SfSK~~g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~ 320 (402)
T TIGR03542 243 SFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGL--QPILEAISYYMENARI 320 (402)
T ss_pred cCccccCCCCcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcch--hHHHHHHHHHHHHHHH
Confidence 99999999999999999965433 12222 22 22345788999999999887553 3456677899999999
Q ss_pred HHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHH
Q 046900 346 IIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEV 425 (442)
Q Consensus 346 l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~ 425 (442)
+.+.|++.|+++..+.+|+|+|++++...+ +.++++.++++.||.+.||+.|+...++|+||+++. +++++++
T Consensus 321 ~~~~L~~~~~~~~~~~~~~f~~v~l~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~ 393 (402)
T TIGR03542 321 LRKALEAAGFKVYGGEHAPYLWVKTPEGIS------SWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG-KRENIVE 393 (402)
T ss_pred HHHHHHhcCceecCCCceeEEEEECCCCCC------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHH
Confidence 999999888888888899999999986432 568899998777999999999976557899999877 8899999
Q ss_pred HHHHHHHH
Q 046900 426 ALKRIHNF 433 (442)
Q Consensus 426 ~l~~l~~~ 433 (442)
++++|+++
T Consensus 394 ~l~~l~~~ 401 (402)
T TIGR03542 394 ACERIKEA 401 (402)
T ss_pred HHHHHHhh
Confidence 99999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-50 Score=387.75 Aligned_cols=333 Identities=20% Similarity=0.354 Sum_probs=274.0
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.+++||+.++|+.+ ++.+.+.+.+.. .....|+++ +.++||+++|+|++ +++++|++|
T Consensus 19 ~~~~~l~~~~~~~~~p~~~~~a~~~~~------------~~~~~Y~~~-~~~~lr~~ia~~~~--------~~~~~i~it 77 (354)
T PRK06358 19 NMILDFSANINPLGVPESLKQAITENL------------DKLVEYPDP-DYLELRKRIASFEQ--------LDLENVILG 77 (354)
T ss_pred cceEEecCCCCCCCCCHHHHHHHHHHH------------HhhhcCCCc-cHHHHHHHHHHHhC--------CChhhEEEC
Confidence 34789999998764 344555444432 124568775 68999999999984 689999999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+|+++++..++.++ .+ +.|++++|+|+.|...++. .|++++.++++.+++|.+| +.+.+.+.. +++++++
T Consensus 78 ~Ga~~~l~~~~~~~-~~-~~v~i~~P~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~d-~~~~~~~~~------~~~~v~~ 147 (354)
T PRK06358 78 NGATELIFNIVKVT-KP-KKVLILAPTFAEYERALKA-FDAEIEYAELTEETNFAAN-EIVLEEIKE------EIDLVFL 147 (354)
T ss_pred CCHHHHHHHHHHHh-CC-CcEEEecCChHHHHHHHHH-cCCeeEEEeCccccCCCcc-HHHHHhhcc------CCCEEEE
Confidence 99999999999987 34 6899999999999999884 9999999999877788999 666555533 6789999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
+|||||||.+++.+++++|+++|++++++||+||+|.+|.+++.. .+...... ..+++|+++||||.||+||+|
T Consensus 148 ~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~-~~~~~~~~-----~~~~vi~~~S~SK~~gl~G~R 221 (354)
T PRK06358 148 CNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENET-ISMINYLE-----NFKNLIIIRAFTKFFAIPGLR 221 (354)
T ss_pred eCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccc-hhHHHhcc-----CCCCEEEEEechhhccCcchh
Confidence 999999999999999999999999999999999999999886542 33333222 247999999999999999999
Q ss_pred eEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEE
Q 046900 287 VGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLF 365 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~ 365 (442)
+||++++++.+.+.+.+....+.++.++|.++..++++.+ ++++.++.++++|+.+.+.|++. |+.+.+|+|+ |
T Consensus 222 iG~lv~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~-f 296 (354)
T PRK06358 222 LGYGLTSNKNLAEKLLQMREPWSINTFADLAGQTLLDDKE----YIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVN-F 296 (354)
T ss_pred heeeecCCHHHHHHHHHhCCCCcchHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcce-E
Confidence 9999987677777777766677889999999999997543 46778888999999999999887 7777778765 8
Q ss_pred EEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 366 CWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
+|++++. ..++++.|+++ ||.+.||+.|+..+++|+||+++. .++.+++++.|++++
T Consensus 297 ~~~~~~~---------~~~~~~~l~~~-gI~v~~~~~f~~~~~~~iRls~~~--~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 297 IFFKLEK---------PIDLRKELLKK-GILIRSCSNYRGLDENYYRVAVKS--REDNKKLLKALEVIL 353 (354)
T ss_pred EEEEcCc---------hHHHHHHHHHC-CeEEEECCCCCCCCCCEEEEEeCC--HHHHHHHHHHHHHHh
Confidence 9999875 35788888876 999999999965456899999986 778999999998765
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=390.03 Aligned_cols=353 Identities=21% Similarity=0.352 Sum_probs=286.9
Q ss_pred CceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEEE
Q 046900 48 SGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIVV 125 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~~ 125 (442)
.++|+|+.+.+..+. +.+.+.+.+... .....|++..|.++||+++++++.+.++ +.++++ +|++
T Consensus 24 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~~i~~ 90 (387)
T PRK07777 24 TGAVNLGQGFPDEDGPPEMLEAAQEAIA-----------GGVNQYPPGPGIPELRAAIAAQRRRRYG--LEYDPDTEVLV 90 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHh-----------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEEE
Confidence 367899988755422 222333332211 1235699889999999999999988776 446676 7999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCC-CCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSS-NNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
|+|+++++.+++.+++++||+|+++.|+|+.+...+.. .|++++.++++++ ++|.+|++.|++.+.+ ++++|
T Consensus 91 t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~v 163 (387)
T PRK07777 91 TVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAM-AGAHRVPVPLVPDGRGFALDLDALRAAVTP------RTRAL 163 (387)
T ss_pred eCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHH-CCCEEEEeecCCccCCCcCCHHHHHHhcCc------ccEEE
Confidence 99999999999999999999999999999999988885 8999999999775 4788999999998764 78899
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
+++|||||||.+++.+++++|+++|+++++++|+||+|.++.|++..+.++..+.. ..+++++++||||.||+||
T Consensus 164 ~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~-----~~~~~i~~~S~SK~~g~~G 238 (387)
T PRK07777 164 IVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPG-----MRERTVTISSAAKTFNVTG 238 (387)
T ss_pred EEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCC-----CcCcEEEEeechhhccCcC
Confidence 99999999999999999999999999999999999999999886655555554422 1468999999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc
Q 046900 285 FRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA 362 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 362 (442)
+|+||+++ ++.+.+.+..... .+..+++.|.++..++... ++|++++++.++++++.+.+.|.+.|+++.++++
T Consensus 239 lRiG~~~~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~g 314 (387)
T PRK07777 239 WKIGWACG-PAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHE---DAWVAALRDSLQAKRDRLAAGLAEAGFEVHDSAG 314 (387)
T ss_pred ceeEEEec-CHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCc
Confidence 99999998 4556666554333 3456778898888888753 3567888999999999999999998989889999
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC---CCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS---EPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~---~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
|||+|++++.... .++.+++++|++++||.|.||+.|+.. ..+++||+++. +++++++++++|+++.
T Consensus 315 ~~~~~~~~~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~-~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 315 TYFLCADPRPLGY----DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCK-RDDTLDEAIRRLRALR 384 (387)
T ss_pred ceEEEecccccCC----CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 9999999764211 136789999987779999999998642 24689999998 8999999999998764
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-49 Score=389.09 Aligned_cols=359 Identities=26% Similarity=0.480 Sum_probs=298.7
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
..++|+|+.+.+.++ ++.+.+.+.+.... ....|++..|..+||+++|+++++.++ ..+++++|++
T Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~i~~ 96 (393)
T PRK05764 30 GRDVISLGAGEPDFDTPEHIKEAAIEALDD-----------GKTKYTPAAGIPELREAIAAKLKRDNG--LDYDPSQVIV 96 (393)
T ss_pred cCCEEEeCCCCCCCCCCHHHHHHHHHHHhc-----------CCCCcCCCCChHHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 356899999988775 35555554443211 134698889999999999999988876 4478899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++..++.+++++||.|++++|+|..+...++. .|++++.++++++++|.+|++.+++.+.+ ++++++
T Consensus 97 ~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~ 169 (393)
T PRK05764 97 TTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKL-AGGVPVFVPTGEENGFKLTVEQLEAAITP------KTKALI 169 (393)
T ss_pred eCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHH-cCCEEEEEecCcccCCcCCHHHHHHhhCc------cceEEE
Confidence 99999999999999999999999999999999998884 89999999998777899999999998854 778999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.++|.+++++|+++|++|++++|+||+|+++.+++..+.++.++..+ ..+++++++||||.+|++|+
T Consensus 170 ~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~SK~~~~~G~ 245 (393)
T PRK05764 170 LNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPE----LRDRTITVNGFSKAYAMTGW 245 (393)
T ss_pred EECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCC----CcCCEEEEecCcccccCccc
Confidence 99999999999999999999999999999999999999988866555566655332 24789999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCc
Q 046900 286 RVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNA 362 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 362 (442)
|+||+++ ++.+.+.+..... .+.++++.|.++..++.. . .+++++.++.++++++.+.+.|+++ |+.+..|+|
T Consensus 246 RiG~i~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g 321 (393)
T PRK05764 246 RLGYAAG-PKELIKAMSKLQSHSTSNPTSIAQYAAVAALNG--P-QDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEG 321 (393)
T ss_pred eeEEEec-CHHHHHHHHHHHhhcccCCChHHHHHHHHHHcC--C-hHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCc
Confidence 9999998 5666666655443 356788999999999873 1 4567888999999999999999988 899888999
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
|+|+|++++......+ .++.+++..+++++||.+.||..|+. ++++||+++. +++++++++++|.++++++
T Consensus 322 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~vRis~~~-~~~~~~~~i~~l~~~~~~~ 392 (393)
T PRK05764 322 AFYVFPNVSKLLGKSI-TDSLEFAEALLEEAGVAVVPGIAFGA--PGYVRLSYAT-SLEDLEEGLERIERFLESL 392 (393)
T ss_pred ceEEEEeccccccccc-CCHHHHHHHHHHhCCEEEccccccCC--CCEEEEEecC-CHHHHHHHHHHHHHHHHhh
Confidence 9999999986432111 12478888888877999999999864 6899999998 8999999999999998765
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-50 Score=392.98 Aligned_cols=357 Identities=35% Similarity=0.547 Sum_probs=298.1
Q ss_pred ceeeeeccccccc--HHHHHHHHHhCCC-CcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEE
Q 046900 49 GVIQMGLAENQVS--FDLLEEYLEQQPE-ASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIV 124 (442)
Q Consensus 49 ~~i~l~~~~n~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~ 124 (442)
++|||+++++... .+.+++++++... .. .......|+++.|+++||+++|+|+++..+ +.++++ +|+
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~~i~ 72 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAA-------TSSSFLGYPPPQGYPELREAIADFLGRRYG--VPVDPEANIL 72 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHH-------HHTGCTSSTCTTHHHHHHHHHHHHHHHHHT--HHTTGGEGEE
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhh-------cccccccCCCchhhHHHHHHHHHHhhhccC--cccccceEEE
Confidence 5799999987664 1222222222211 00 012457899999999999999999997665 667888 999
Q ss_pred EecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 125 VTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
+++|+++++..++..+ .++||.|++++|+|+.+...++. .|+++++++++.+++|.+|++.|++.+++...++.++++
T Consensus 73 ~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 151 (363)
T PF00155_consen 73 VTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAARL-LGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKA 151 (363)
T ss_dssp EESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHH-TTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEE
T ss_pred EecccccchhhhhhcccccccccceecCCccccccccccc-cCceeeeccccccccccccccccccccccccccccccce
Confidence 9999999999999999 88999999999999999999995 999999999887788999999999999875544435789
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
+++++|+||||.+++.+++++|+++|++||++||+||+|+++.++...+.+....... ..++++++||||.||++
T Consensus 152 v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-----~~~vi~~~S~SK~~g~~ 226 (363)
T PF00155_consen 152 VLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDE-----DDNVIVVGSLSKSFGLP 226 (363)
T ss_dssp EEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTT-----TSTEEEEEESTTTTTSG
T ss_pred eeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccc-----cccceeeeecccccccc
Confidence 9999999999999999999999999999999999999999998875533332222222 35699999999999999
Q ss_pred CceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCce
Q 046900 284 GFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG 363 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 363 (442)
|+|+||+++ ++.+.+.++.....+..+++.|.++.+++.+.....+++++.++.++++++++.+.|.+.|+.+.++++|
T Consensus 227 GlRvG~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~~~ 305 (363)
T PF00155_consen 227 GLRVGYIVA-PPELIERLRRFQRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGITVLPPEAG 305 (363)
T ss_dssp GGTEEEEEE-EHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEHHSBS
T ss_pred ccccccccc-hhhhhhhhhhccccccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhheeeccCc
Confidence 999999999 6777778877776666689999999999988765556899999999999999999999999999999999
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRI 430 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l 430 (442)
+|+|+.++.. ++.+++++|++++||.+.||..|+. ++++||+++..+++++++++++|
T Consensus 306 ~~~~~~~~~~-------~~~~l~~~L~~~~gi~v~pg~~~~~--~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 306 FFLWVRLDPN-------DAEELAQELLEEYGILVRPGSYFGV--PGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp SEEEEEESHH-------HHHHHHHHHHHHHTEEEEEGGGGTS--TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred cEEEEEcccc-------hHHHHHHHHHHhCCEEEEecCCCCC--CCEEEEEeccCCHHHHHHHHhhC
Confidence 9999998763 3688999999988999999999886 78999999655999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-49 Score=384.12 Aligned_cols=335 Identities=20% Similarity=0.368 Sum_probs=267.8
Q ss_pred CCCCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCc-cCCCc
Q 046900 45 TNPSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAK-FDLNR 122 (442)
Q Consensus 45 ~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~~~ 122 (442)
.++.++|+|+.+++..+ .+.+.+.+.+.. ...+|+++.|.++||+++|+|+.+.++ ++ +++++
T Consensus 24 ~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~-------------~~~~Y~~~~G~~~lr~~ia~~l~~~~~--~~~~~~~~ 88 (364)
T PRK07865 24 AHPDGIVDLSVGTPVDPVPPVIQEALAAAA-------------DAPGYPTTAGTPELREAIVGWLARRRG--VTGLDPAA 88 (364)
T ss_pred hcCCCEEEcCCCCCCCCCCHHHHHHHHHHH-------------hhCCCCCccCCHHHHHHHHHHHHHHcC--CCCCCccc
Confidence 45567899999876544 355555555432 123799989999999999999998776 44 78999
Q ss_pred EEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCce
Q 046900 123 IVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201 (442)
Q Consensus 123 i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (442)
|++|+|+++++..++.++ +++||.|++++|+|+.|...++. .|++++.++. .++++. .++
T Consensus 89 I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~~~~---------~~~l~~---------~~~ 149 (364)
T PRK07865 89 VLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARL-AGATVVRADS---------LTELGP---------QRP 149 (364)
T ss_pred EEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHh-cCCEEEecCC---------hhhCCc---------ccc
Confidence 999999999999998888 79999999999999999998885 8999888751 223322 267
Q ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC
Q 046900 202 RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG 281 (442)
Q Consensus 202 ~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g 281 (442)
++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++.. .+... ........+++++++||||.||
T Consensus 150 ~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~-~~~~~--~~~~~~~~~~~i~~~S~SK~~~ 226 (364)
T PRK07865 150 ALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEP-VSILD--PRVCGGDHTGLLAVHSLSKQSN 226 (364)
T ss_pred eEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCC-Ccccc--ccccCCccceEEEEeechhccC
Confidence 89999999999999999999999999999999999999999998886532 22211 1000012478999999999999
Q ss_pred CCCceeEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 046900 282 LPGFRVGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK 359 (442)
Q Consensus 282 ~~G~RiG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 359 (442)
+||+|+||+++ ++.+.+.++... ..+.++++.|.++.+++.+. +++++.++.++++++.+.+.|++.|+.+..
T Consensus 227 ~~GlRiG~i~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 301 (364)
T PRK07865 227 LAGYRAGFVAG-DPALVAELLEVRKHAGMMVPAPVQAAMVAALGDD----AHVREQRERYARRRAVLRPALEAAGFRVDH 301 (364)
T ss_pred CCceeeEEEec-CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 99999999998 456666655433 23567889999999999863 346778889999999999999999988888
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIH 431 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~ 431 (442)
+++|+|+|++++. +..++++.|.++ ||.+.||..|+...++++||+++. +++++++++++|+
T Consensus 302 ~~~~~~~~~~~~~--------~~~~~~~~l~~~-gv~v~pg~~f~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 363 (364)
T PRK07865 302 SEAGLYLWATRGE--------DCWDTVAWLAER-GILVAPGDFYGPAGAQHVRVALTA-TDERIAAAVERLA 363 (364)
T ss_pred CCccEEEEEeCCC--------CHHHHHHHHHHC-CEEEeCccccCcCCCCEEEEEecC-CHHHHHHHHHHhh
Confidence 9999999998743 245666766555 999999998875557899999987 7899999999985
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-49 Score=375.32 Aligned_cols=330 Identities=22% Similarity=0.381 Sum_probs=283.2
Q ss_pred ceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEec
Q 046900 49 GVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA 127 (442)
Q Consensus 49 ~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~ 127 (442)
++++|++|+|++++ +.+.+.+..... ....||++ ...+|+++++++++. .++++|++++
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~~~------------~~~rYPd~-~~~~l~~a~a~~~~~-------~~~~~V~~gn 82 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAALD------------KLNRYPDP-DYRELRAALAEYYGV-------VDPENVLVGN 82 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHHHH------------hhccCCCC-cHHHHHHHHHHHhCC-------CCcceEEEcC
Confidence 68999999999976 555555554431 35689988 679999999999862 5789999999
Q ss_pred ChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEe
Q 046900 128 GATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLIT 207 (442)
Q Consensus 128 G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~ 207 (442)
|+++.|..++++++.+||.|+++.|+|..|...++. .|++++.++..+ |.+|++.+.+.+.+ ++++|++|
T Consensus 83 Gsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~~-~g~~~~~v~~~~---~~~d~~~~~~~~~~------~~~lv~i~ 152 (356)
T COG0079 83 GSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQL-AGAEVVKVPLKE---FRLDLDAILAAIRD------KTKLVFLC 152 (356)
T ss_pred ChHHHHHHHHHHhhcCCCEEEEcCCChHHHHHHHHh-cCCeEEEecccc---cccCHHHHHHhhhc------CCCEEEEe
Confidence 999999999999999999999999999999999995 999999999875 88999999999875 78999999
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee
Q 046900 208 NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV 287 (442)
Q Consensus 208 ~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri 287 (442)
|||||||..++.++++++++.+.+ +.+||+||+|.+|. + .+...+... ++|+++++||||+||++|+|+
T Consensus 153 nPNNPTG~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~--~---~~~~~l~~~-----~~nlivlRTfSKa~gLAGlRl 221 (356)
T COG0079 153 NPNNPTGTLLPREELRALLEALPE-GGLVVIDEAYIEFS--P---ESSLELLKY-----PPNLIVLRTFSKAFGLAGLRV 221 (356)
T ss_pred CCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhhcC--C---chhhhhccC-----CCCEEEEEecHHhhhcchhce
Confidence 999999999999999999999988 99999999999965 3 233333333 578999999999999999999
Q ss_pred EEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCe-eecCCceEEE
Q 046900 288 GTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIE-CLKGNAGLFC 366 (442)
Q Consensus 288 G~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~~g~~~ 366 (442)
||+++ ++.+.+.+++...+|.++.++|.++.+++++.+ ++++..+.+++.|+++.+.|++.|+. +.+++ ++|+
T Consensus 222 Gy~ia-~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~~----~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~-aNFv 295 (356)
T COG0079 222 GYAIA-NPELIAALNKVRPPFNVSSPALAAAIAALRDAD----YLEESVERIREERERLYAALKALGLFGVFPSQ-ANFV 295 (356)
T ss_pred eeccC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHcccHH----HHHHHHHHHHHHHHHHHHHHHhCCCCeecCCC-CcEE
Confidence 99988 788999999999999999999999999999764 57888999999999999999998855 66666 5599
Q ss_pred EEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 367 WMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
+++++.. . +..+++.|+++ ||.|+.+.. .+..++|+||++++ +++.++++++|++++..
T Consensus 296 lv~~~~~------~-~~~l~~~L~~~-giivR~~~~-~~~~~~~lRitvgt--~een~~ll~AL~~~~~~ 354 (356)
T COG0079 296 LVRVPDA------E-AAALAEALLKK-GILVRDCSS-VGLLPGYLRITVGT--PEENDRLLAALREVLKG 354 (356)
T ss_pred EEECCCc------c-HHHHHHHHHHC-CEEEEeCCC-CCCCCCeEEEEeCC--HHHHHHHHHHHHHHHhc
Confidence 9998761 1 34678888777 999999876 44457899999996 67789999999998764
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-49 Score=386.41 Aligned_cols=345 Identities=19% Similarity=0.297 Sum_probs=270.3
Q ss_pred Cceeeeecccc---c--cc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 48 SGVIQMGLAEN---Q--VS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 48 ~~~i~l~~~~n---~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
+++|||+.+.+ . ++ .+.+.+.+.+.... .....|++..|.++||+++++|+.+..+ ..++++
T Consensus 26 ~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~----------~~~~~Y~~~~G~~~lR~aia~~~~~~~~--~~~~~~ 93 (396)
T PRK09257 26 PDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLET----------ETTKNYLPIEGLAAYRQAVQELLFGADS--PALAAG 93 (396)
T ss_pred cCcEecceeeEECCCCCEeccHHHHHHHHHhccc----------ccCCCcCCCCCCHHHHHHHHHHhcCCCC--cccccC
Confidence 36799999852 1 23 24566665554321 1245799999999999999999975432 235788
Q ss_pred cE--EEecChHHHHHHHHHhh--cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhc
Q 046900 122 RI--VVTAGATAANELLTFIL--ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESK 197 (442)
Q Consensus 122 ~i--~~t~G~~~ai~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 197 (442)
+| ++|+|+++++.++++++ +++||.|++++|+|+.|...++. .|++++.+|+..+++|++|++.+++.+++.
T Consensus 94 ~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~-~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~--- 169 (396)
T PRK09257 94 RVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEA-AGLEVKTYPYYDAATKGLDFDAMLADLSQA--- 169 (396)
T ss_pred eEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHH-cCCcEEEEeccccccCccCHHHHHHHHHhC---
Confidence 87 99999999999998766 58999999999999999999995 999999999843445889999999988742
Q ss_pred CCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCC-CCCcccHHHHHhhhcCCCCCcEEEEecC
Q 046900 198 DMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS-SSEFVSIAEILEARQYKDSERVHIVYSL 276 (442)
Q Consensus 198 ~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~-~~~~~s~~~~~~~~~~~~~~~vi~~~S~ 276 (442)
..++++++++|||||||.++|.+++++|+++|++|+++||+||+|.++.++ +..+.++..+... .+++|+++||
T Consensus 170 ~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~-----~~~vi~i~Sf 244 (396)
T PRK09257 170 PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAA-----GLELLVASSF 244 (396)
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhc-----CCcEEEEEEc
Confidence 123456677899999999999999999999999999999999999998875 2224455555432 4689999999
Q ss_pred cccCCCCCceeEEEee--cCHH-HH---HHHHHc--cccCCCcHHHHHHHHHHhcCchh---HHHHHHHHHHHHHHHHHH
Q 046900 277 SKDLGLPGFRVGTIYS--YNDK-VV---TTARRM--SSFTLISSQTQYLLASMLSNKKF---TENYIKTNRERLQKRYQM 345 (442)
Q Consensus 277 SK~~g~~G~RiG~i~~--~~~~-~~---~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~ 345 (442)
||.|+++|+|+||+++ +++. +. ..++.. ...+.++++.|.+++.++.++.+ ..++++++++.|+++|+.
T Consensus 245 SK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~ 324 (396)
T PRK09257 245 SKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQL 324 (396)
T ss_pred CCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988999999973 3433 22 222222 22344578899999999988653 256788899999999999
Q ss_pred HHHHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHH
Q 046900 346 IIEGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQ 421 (442)
Q Consensus 346 l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e 421 (442)
+.+.|++.+ +.+..|+||||+|++++. +++.++++++||.+.|. + ||+|+.++++
T Consensus 325 l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~~-----------~~~~~l~~~~~V~~~p~--------~--ri~~~~~~~~ 383 (396)
T PRK09257 325 LVEALKAKGPSRDFDFIARQRGMFSYSGLTP-----------EQVDRLREEFGVYAVGS--------G--RINVAGLNES 383 (396)
T ss_pred HHHHHHhcCCCCCcccccccceEEEecCCCH-----------HHHHHHHHcCCEEEcCC--------C--eEEEeeCCHH
Confidence 999999874 667789999999998752 35567778889999872 2 9999867999
Q ss_pred HHHHHHHHHHHHH
Q 046900 422 TLEVALKRIHNFM 434 (442)
Q Consensus 422 ~i~~~l~~l~~~l 434 (442)
++++++++|++++
T Consensus 384 ~i~~~~~~i~~~~ 396 (396)
T PRK09257 384 NIDYVAEAIAAVL 396 (396)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998753
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=384.87 Aligned_cols=328 Identities=15% Similarity=0.274 Sum_probs=269.4
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.++|+|+.|+|+++ ++.+.+.+.+... ....|+ ..|.++||+++|+|++ +++++|++|
T Consensus 29 ~~~i~l~~nen~~~~~~~v~~a~~~~~~------------~~~~Yp-~~g~~~Lr~aia~~~~--------~~~~~I~vt 87 (366)
T PRK01533 29 HSFVKLASNENPFGCSPRVLDELQKSWL------------DHALYP-DGGATTLRQTIANKLH--------VKMEQVLCG 87 (366)
T ss_pred CceEEeCCCCCCCCCCHHHHHHHHHHHH------------hcCcCC-CCCHHHHHHHHHHHhC--------CCcceEEEC
Confidence 47899999999985 3555555554321 123475 4588999999999984 689999999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+|+++++.+++.+++++||.|++++|+|+.|...+.. .|++++.++++. +.+|++.+++.+++ +++++++
T Consensus 88 ~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~-~g~~v~~v~~~~---~~~d~~~l~~~~~~------~~~~v~i 157 (366)
T PRK01533 88 SGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAII-EGCEVKEVALNN---GVYDLDEISSVVDN------DTKIVWI 157 (366)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHH-cCCEEEEeecCC---CCcCHHHHHHHhCc------CCcEEEE
Confidence 9999999999999999999999999999999999985 999999999853 35899999988764 7789999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
||||||||.+++.+++++|+++|++++ ++|+||+|.++.+.+. ..+....... .+++|+++||||.||+||+|
T Consensus 158 ~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~-~~~~~~~~~~-----~~~vi~~~SfSK~~~l~GlR 230 (366)
T PRK01533 158 CNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKD-FPETLPLLEK-----HKNILVLRTFSKAYGLASFR 230 (366)
T ss_pred eCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcccc-CcchhHHhcc-----CCCEEEEeCchHHhcChHHH
Confidence 999999999999999999999998766 5778999998876542 2233333222 47899999999999999999
Q ss_pred eEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEE
Q 046900 287 VGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFC 366 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~ 366 (442)
+||+++ ++.+.+.+.+....+.++.++|.++.++|++.+ +.++.++.++++++++.+.++..|+++.+++++ |+
T Consensus 231 iG~~i~-~~~~~~~l~~~~~~~~~~~~~q~aa~~~l~~~~----~~~~~~~~~~~~r~~~~~~l~~~g~~~~~~~~n-f~ 304 (366)
T PRK01533 231 VGYAVG-HEELIEKLNVVRLPFNVSSLAQKAATIAFGDDE----FIEEIVRVNTEGLRQYESFCKENEIPFYQSQTN-FI 304 (366)
T ss_pred HhHHhC-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHhCCCccCCCcCc-EE
Confidence 999999 567777777666668899999999999998654 456667778888889999998889888888655 89
Q ss_pred EEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 367 WMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
|++++. +.++.+.|+++ ||.|++ | ++++||+++. .+++++++++|+++++..+
T Consensus 305 ~~~~~~---------~~~~~~~l~~~-GI~Vr~---~----~~~iRis~~~--~~~~~~l~~al~~~~~~~~ 357 (366)
T PRK01533 305 FLPVEN---------GGEIYEACAHA-GFIIRP---F----PNGVRITVGT--REQNEGVISVLQQHFENKK 357 (366)
T ss_pred EEeCCC---------HHHHHHHHHHC-CcEEcc---C----CCceEEeCCC--HHHHHHHHHHHHHHHHhcc
Confidence 999863 45678888765 999998 4 3689999986 7889999999999876543
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=408.33 Aligned_cols=366 Identities=19% Similarity=0.276 Sum_probs=285.7
Q ss_pred CCCCCCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC-
Q 046900 43 ESTNPSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL- 120 (442)
Q Consensus 43 ~~~~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~- 120 (442)
+...+.++|+|++++|++++ +.+.+.+.+.... ..+ ..|++++|+++++|+.+++| ++.++
T Consensus 692 ~~~~g~~vI~LsinE~d~ppPp~V~eAi~eal~~-------------~~~--s~g~pdlr~aLa~~la~~~G--v~~d~~ 754 (1082)
T PLN02672 692 SGSQESSLIHMDVDESFLPVPSAVKASIFESFVR-------------QNI--SESETDPRPSILQFIKSNYG--FPTDSC 754 (1082)
T ss_pred cccCCCCEEEEeCCCCCCCCCHHHHHHHHHHHhh-------------cCC--CCCChHHHHHHHHHHHHHhC--cCCCCC
Confidence 34445689999999999864 5566655543210 112 34667899999999999877 44544
Q ss_pred CcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCc
Q 046900 121 NRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMR 200 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 200 (442)
++|++|+|+++++..++.+++++||.|+++.|+|+.|...++. .|++++.+|++++++|.+|++.+++++++. +
T Consensus 755 e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~~-~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~-----~ 828 (1082)
T PLN02672 755 TEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKF-LKANFRRIPTKSSDGFKLTAKTLASTLETV-----K 828 (1082)
T ss_pred CEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHH-cCCEEEEEecccccCCCCCHHHHHHHhccC-----C
Confidence 5899999999999999999999999999999999999999995 999999999987778999999999988531 2
Q ss_pred eeEEEEeCCC-CCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc--ccHHHHHhhhcC-CCCCcEEEEecC
Q 046900 201 VRGVLITNPS-NPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF--VSIAEILEARQY-KDSERVHIVYSL 276 (442)
Q Consensus 201 ~~~v~l~~P~-NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~--~s~~~~~~~~~~-~~~~~vi~~~S~ 276 (442)
.++++++||| ||||.+++.+++++|+++|++|+++||+||+|+++.|++... .++.+....... ....+|++++||
T Consensus 829 ~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~Sf 908 (1082)
T PLN02672 829 KPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGL 908 (1082)
T ss_pred CCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCc
Confidence 3579999997 999999999999999999999999999999999999976431 122222211000 012479999999
Q ss_pred cccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHh---c--CchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046900 277 SKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASML---S--NKKFTENYIKTNRERLQKRYQMIIEGLR 351 (442)
Q Consensus 277 SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l---~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 351 (442)
||.|++||+|+||++++++.+++.+.+...........|.++.+++ . +.+| .+++++.++.++++|+++.+.|+
T Consensus 909 SKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~-~~~l~e~r~~Lk~rRd~L~e~L~ 987 (1082)
T PLN02672 909 STELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDL-LDGVAEQKKILKSRAERLKETLE 987 (1082)
T ss_pred HHhhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999777677777654333333334444444333 2 3444 56788889999999999999999
Q ss_pred hCCCeeecCCceEEEEEecCCccc----ccC-------hhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCH
Q 046900 352 SAGIECLKGNAGLFCWMNLSPLLE----EQT-------REGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSE 420 (442)
Q Consensus 352 ~~g~~~~~~~~g~~~~~~~~~~~~----~~~-------~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~ 420 (442)
+.|+++.+|+||||+|++++.... ... ..++.++++.|++++||.+.||+.|+. ++|+||+++. ++
T Consensus 988 ~~Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~--~g~~RIsfa~-~~ 1064 (1082)
T PLN02672 988 ACGWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI--PGYCRFSFAL-ED 1064 (1082)
T ss_pred HCCCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC--CCeEEEEecC-CH
Confidence 999999999999999998754221 000 114678999999988999999988753 6899999997 88
Q ss_pred HHHHHHHHHHHHHHH
Q 046900 421 QTLEVALKRIHNFMQ 435 (442)
Q Consensus 421 e~i~~~l~~l~~~l~ 435 (442)
+++++++++|+++..
T Consensus 1065 e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1065 SEFDRALKAIARFKE 1079 (1082)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999998754
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=385.45 Aligned_cols=346 Identities=17% Similarity=0.261 Sum_probs=270.3
Q ss_pred Cceeeeeccccc-c-----cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 48 SGVIQMGLAENQ-V-----SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 48 ~~~i~l~~~~n~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
+++|||+.+.++ . +.+.+.+.+...... ....+|+++.|.++||+++|+|+.+..+ ..++++
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~----------~~~~~Y~~~~G~~~lR~aia~~~~~~~~--~~~~~~ 96 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEK----------NLDKEYLPIEGLQSFIEAAQKLLFGEAS--YALAEK 96 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHhccc----------cCCCCCCCCCCCHHHHHHHHHHhcCCCc--cccccC
Confidence 367899988742 2 234445444332210 2346899999999999999999865432 346889
Q ss_pred cEE--EecChHHHHHHHHH---hhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHh
Q 046900 122 RIV--VTAGATAANELLTF---ILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAES 196 (442)
Q Consensus 122 ~i~--~t~G~~~ai~~~~~---~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~ 196 (442)
+|+ .|.|+++++.+++. +++++||.|++++|+|+.|...++. .|++++.+|+.++++|++|++.+++.+++.
T Consensus 97 ~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~-~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~-- 173 (404)
T PTZ00376 97 RIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKS-AGLNVKEYRYYDPKTKGLDFDGMLEDLRTA-- 173 (404)
T ss_pred eEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHH-cCCceeeccccCcccCCcCHHHHHHHHHhC--
Confidence 998 59999999988864 6789999999999999999999995 999999999965556899999999998642
Q ss_pred cCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC--CcccHHHHHhhhcCCCCCcEEEEe
Q 046900 197 KDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS--EFVSIAEILEARQYKDSERVHIVY 274 (442)
Q Consensus 197 ~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~--~~~s~~~~~~~~~~~~~~~vi~~~ 274 (442)
..++++++++|||||||.++|.+++++|+++|++|+++||+||+|.++.+++. .+.++..+... .+++++++
T Consensus 174 -~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~-----~~~vi~i~ 247 (404)
T PTZ00376 174 -PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAER-----GVEFLVAQ 247 (404)
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhc-----CCcEEEEE
Confidence 12456778899999999999999999999999999999999999999988541 23344444332 36899999
Q ss_pred cCcccCCCCCceeEEEe--ecCHHHHH----HHHHc-cccC-CCcHHHHHHHHHHhcCchhHHHH---HHHHHHHHHHHH
Q 046900 275 SLSKDLGLPGFRVGTIY--SYNDKVVT----TARRM-SSFT-LISSQTQYLLASMLSNKKFTENY---IKTNRERLQKRY 343 (442)
Q Consensus 275 S~SK~~g~~G~RiG~i~--~~~~~~~~----~~~~~-~~~~-~~s~~~q~~~~~~l~~~~~~~~~---~~~~~~~~~~~~ 343 (442)
||||.|++||+|+||++ ..++.+.+ .+.+. ...+ ..++++|.++..+++++++.++| +++.++.++++|
T Consensus 248 SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 327 (404)
T PTZ00376 248 SFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMR 327 (404)
T ss_pred eCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999983 22444333 23322 2233 34678999999999986554333 566778999999
Q ss_pred HHHHHHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCC
Q 046900 344 QMIIEGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMS 419 (442)
Q Consensus 344 ~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~ 419 (442)
+.+.+.|++.+ +.+..|+||||+|++++ .+++++|++++||.+.|| + ||+++.++
T Consensus 328 ~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~-----------~~~~~~L~~~~~v~v~p~--------~--Ris~~~~~ 386 (404)
T PTZ00376 328 QLLYDELKALGSPGDWEHIINQIGMFSFTGLT-----------KEQVERLIEKYHIYLLDN--------G--RISVAGLT 386 (404)
T ss_pred HHHHHHHHhcCCCCcccccccCceEEEecCCC-----------HHHHHHHHHhCCEeecCC--------C--eEEEeccC
Confidence 99999999875 44567899999999874 267888999989999996 2 99998568
Q ss_pred HHHHHHHHHHHHHHHH
Q 046900 420 EQTLEVALKRIHNFMQ 435 (442)
Q Consensus 420 ~e~i~~~l~~l~~~l~ 435 (442)
.+++++++++|++++.
T Consensus 387 ~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 387 SKNVDYVAEAIHDVVR 402 (404)
T ss_pred HHhHHHHHHHHHHHHh
Confidence 9999999999999875
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=388.20 Aligned_cols=385 Identities=17% Similarity=0.220 Sum_probs=282.3
Q ss_pred ccchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCceeeeecccccc-c--HHHHHHHHHhCCCCcccCCCCCCCCccc
Q 046900 13 GLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQV-S--FDLLEEYLEQQPEASTWGKGAPGFRENA 89 (442)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (442)
.+||||-+..+ ......-|..... ... ..++|+|+.+.+.. + .+.+.+.+......... .....
T Consensus 2 ~~~~~~~~~~~--~~~~~~~~~~~~~----~~~-~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 68 (416)
T PRK09440 2 QFSKFGEKFTR--HSGITQLMDDLND----GLR-TPGAIMLGGGNPAHIPEMEDYFRDLLADLLASGKL------TEALG 68 (416)
T ss_pred chhHHHHHHHh--hhcHHHHHHHHHH----Hhc-CCCceeccCCCCCccCCHHHHHHHHHHHHhcCccc------ccccc
Confidence 47889888763 3333322333322 222 25679999886542 2 24555555543221100 01345
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC-----CCCeEEE-cCCCCcChHHhHhh
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD-----PGDALLV-PTPYYPGFDRDLRW 163 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~-----~gd~Vl~-~~p~y~~~~~~~~~ 163 (442)
.|+++.|.++||++||+|+.+++| +.+++++|++|+|+++++.+++.++++ +||.|++ ++|+|+.|...+..
T Consensus 69 ~Y~~~~G~~~LR~aia~~~~~~~g--~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~ 146 (416)
T PRK09440 69 NYDGPQGKDELIEALAALLNERYG--WNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLE 146 (416)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhC--CCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhc
Confidence 799999999999999999998876 568899999999999999999999985 5899999 79999999875542
Q ss_pred hcC----cEEEEEecCCC-CCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEE
Q 046900 164 RTG----IKIVPIHCDSS-NNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVS 238 (442)
Q Consensus 164 ~~G----~~v~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~ 238 (442)
.| .....++++.+ .+|.+|++.|+ +. .++++++++|||||||.++|.+++++|+++|++++++||+
T Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~------~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~ 217 (416)
T PRK09440 147 -EDLFVSYRPNIELLPEGQFKYHVDFEHLH--ID------EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLI 217 (416)
T ss_pred -cCceeecccccccccccccccCCCHHHcc--cC------CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEE
Confidence 33 11122333322 14789999887 22 2678999999999999999999999999999999999999
Q ss_pred eccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHH
Q 046900 239 DEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQY 316 (442)
Q Consensus 239 De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~ 316 (442)
||+|.++.. .. ......+. ..+++|+++||||. ++||+|+||+++ ++.+.+.+...... ..++.+.|.
T Consensus 218 De~Y~~~~~-~~---~~~~~~~~----~~~~vI~~~SfSK~-~~pGlRiG~~i~-~~~l~~~~~~~~~~~~~~~s~~~q~ 287 (416)
T PRK09440 218 DNAYGPPFP-GI---IFSEATPL----WNPNIILCMSLSKL-GLPGVRCGIVIA-DEEIIEALSNMNGIISLAPGRLGPA 287 (416)
T ss_pred eCCccccCC-Cc---chhhcCcc----ccCCeEEEeccccc-CCCcceEEEEeC-CHHHHHHHHHHHHHhccCCCcHHHH
Confidence 999986431 11 11111110 13789999999996 899999999999 55666666554433 457889999
Q ss_pred HHHHHhcCchhHHHHHHH-HHHHHHHHHHHHHHHHHhC----CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHH
Q 046900 317 LLASMLSNKKFTENYIKT-NRERLQKRYQMIIEGLRSA----GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLH 391 (442)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 391 (442)
++..++.++++ .++..+ .++.|+++++.+.+.|.+. ++.+..|+||+|+|++++.... ++.++++.+.+
T Consensus 288 ~~~~~l~~~~~-~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~fiw~~~~~~~~-----~~~~~~~~l~~ 361 (416)
T PRK09440 288 IAAEMIESGDL-LRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLWLWFKDLPI-----TTEELYQRLKA 361 (416)
T ss_pred HHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCceEEEEECCCCCC-----CHHHHHHHHHH
Confidence 99999998876 444444 6888999999999888764 4566789999999999986211 25677777755
Q ss_pred cCcEEEeCCCCCCCCC-------CCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 392 EVKLNISPGSSCHCSE-------PGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 392 ~~gi~v~pg~~f~~~~-------~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
+||.|.||+.|+... .+++||+++. +++++++++++|++++++..+
T Consensus 362 -~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~-~~~~l~~~i~~l~~~~~~~~~ 414 (416)
T PRK09440 362 -RGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ-DDEEIEKGIAILAEEVEKAYA 414 (416)
T ss_pred -CCEEEechHhhCCCCccccCCcCceEEEEecC-CHHHHHHHHHHHHHHHHHHhh
Confidence 599999999985321 3589999987 789999999999999987544
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=388.30 Aligned_cols=353 Identities=18% Similarity=0.289 Sum_probs=269.7
Q ss_pred ceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHH-HHHHHHhCCCCccCCC--cEE
Q 046900 49 GVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMA-SFMEQIRGGRAKFDLN--RIV 124 (442)
Q Consensus 49 ~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia-~~l~~~~~~~~~~~~~--~i~ 124 (442)
++|+++.+++.+++ +.+.++..... ..+|+++.|..++|++++ +|+.+.++.. ..+++ +|+
T Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~--------------~~~Y~~p~g~~~~~e~iv~~y~~~~~~~~-~~~~~~~~V~ 159 (521)
T TIGR03801 95 DIISYVIDQLGFDPDAFLYEMCDGII--------------GDNYPVPDRMLPHSEKIVHQYLIQEMCGN-KPPPGEFDLF 159 (521)
T ss_pred HHHhhcCCCCCCCCCHHHHHHHHHhh--------------cCCCCCCCCCHHHHHHHHHHHHHhhccCC-CCCCCcCeEE
Confidence 56888888877754 34444333321 125887777788887777 5766654421 12344 899
Q ss_pred EecChHHHHHHHHHh-----hcCCCCeEEEcCCCCcChHHhHhhh-cCcEEEEEecCCCCC-----CcCCHHHHHHHHHH
Q 046900 125 VTAGATAANELLTFI-----LADPGDALLVPTPYYPGFDRDLRWR-TGIKIVPIHCDSSNN-----FQITPQALEAAYKE 193 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~-----l~~~gd~Vl~~~p~y~~~~~~~~~~-~G~~v~~v~~~~~~~-----~~~d~~~l~~~l~~ 193 (442)
+|+|+++++..++.+ +++|||.|++++|+|+.|...+... .|++++.++++++++ |++|++++++++.+
T Consensus 160 it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~ 239 (521)
T TIGR03801 160 AVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDP 239 (521)
T ss_pred EeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCC
Confidence 999999999999887 7899999999999999999887641 478888988875443 99999999987643
Q ss_pred HHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhc--CcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEE
Q 046900 194 AESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK--NIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVH 271 (442)
Q Consensus 194 ~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~--~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi 271 (442)
++|+++++|||||||.++|.+++++|+++|++| +++||+||+|++|.+ .+.|+.+.. ++++|
T Consensus 240 ------~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~sl~~~~-------~~~vI 303 (521)
T TIGR03801 240 ------SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD---DFRSLFAEL-------PYNTI 303 (521)
T ss_pred ------CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc---cccchhhhC-------CCCEE
Confidence 889999999999999999999999999999986 899999999999764 344554442 36899
Q ss_pred EEecCcccCCCCCceeEEEeecCHHHHH------------HH------------------------HHcc--ccCCCcHH
Q 046900 272 IVYSLSKDLGLPGFRVGTIYSYNDKVVT------------TA------------------------RRMS--SFTLISSQ 313 (442)
Q Consensus 272 ~~~S~SK~~g~~G~RiG~i~~~~~~~~~------------~~------------------------~~~~--~~~~~s~~ 313 (442)
+++||||.||++|||+||++++++.+.+ .+ ++.. ...+++++
T Consensus 304 ~v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p 383 (521)
T TIGR03801 304 GVYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTP 383 (521)
T ss_pred EEEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcH
Confidence 9999999999999999999997553211 11 1111 12345666
Q ss_pred HHH--H---HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCe--eecCCceEEEEEecCCcccc---cC-----
Q 046900 314 TQY--L---LASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIE--CLKGNAGLFCWMNLSPLLEE---QT----- 378 (442)
Q Consensus 314 ~q~--~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~--~~~~~~g~~~~~~~~~~~~~---~~----- 378 (442)
.|. + +.+++... +.+++++++.+++|++.+.+.| |+. ..+++|+||+|++++..... ..
T Consensus 384 ~Q~q~al~a~~all~~~---~~y~~~~~~~~~~R~~~l~~~L---g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l 457 (521)
T TIGR03801 384 QQVQMALFSLFALMDKE---NAYKAETKDICRRREKLLFRGL---GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYL 457 (521)
T ss_pred HHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHhc---CCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHH
Confidence 665 3 44455432 4578889999999999999998 444 45689999999999853210 00
Q ss_pred --hhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 379 --REGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 379 --~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
..++.+++.+|++++||.+.||+.|+.. .+++|||+++++++++.++.++|++++.++..
T Consensus 458 ~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~-~~~vRisla~l~~~~~~~~~~rl~~~~~~~~~ 519 (521)
T TIGR03801 458 KKNYSPVDVLFRLAEETGIVLLPGGGFGGP-EWSVRVSLANLNEYDYAEIGRAIRKILDEYYE 519 (521)
T ss_pred hccCCHHHHHHHHHHhCCEEEeCchhcCCC-CCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0136789999999999999999999853 57899999977899999999999999987654
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=378.26 Aligned_cols=327 Identities=20% Similarity=0.281 Sum_probs=265.6
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|+|+.++|+++ ++.+.+.+.+... ....|++ .|.++||+++|+|++ +++++|++
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~Y~~-~~~~~lr~~ia~~~~--------~~~~~I~i 87 (357)
T PRK14809 29 PDDLVKLSSNENPHGPSPAAVEAIREAAE------------RVHSYPK-ASHADLTAALADRWD--------VSPEQVWL 87 (357)
T ss_pred ccceeEecCCCCCCCCCHHHHHHHHHHHh------------hhhcCCC-CCHHHHHHHHHHHhC--------CCcceEEE
Confidence 557899999999874 3444555544321 1356875 588999999999974 68999999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++.+++++++++||.|++++|+|+.+...+.. .|.+++.++++.+++|.+|.+.+++... ++|+++
T Consensus 88 t~G~~~al~~~~~~~~~~gd~V~v~~P~y~~~~~~~~~-~g~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~k~i~ 159 (357)
T PRK14809 88 ANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARY-HHGEVREYPVSKADDFEQTADTVLDAYD-------GERIVY 159 (357)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHH-cCCeEEEEecccCcCCCcCHHHHHHhhc-------CCcEEE
Confidence 99999999999999999999999999999988887774 8999999999766678888887776542 578999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+||||||||.++|.+++++|+++|++ +++||+||+|.++.+.+ +....... .+++++++||||.||+||+
T Consensus 160 l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~----~~~~~~~~-----~~~vi~~~SfSK~~~~~Gl 229 (357)
T PRK14809 160 LTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERP----SAVALVEE-----RDDVAVLRTFSKAYGLAGL 229 (357)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCc----hhHHHHhh-----CCCEEEEecchhHhcCcch
Confidence 99999999999999999999999975 78999999999987633 22222222 4789999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEE
Q 046900 286 RVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLF 365 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~ 365 (442)
|+||++++ +.+.+.+.+....+.+++++|.++..++.+. +++++.++.++++|+.+.+.|...++ +.+|+|
T Consensus 230 RiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~~~----~~~g~f 300 (357)
T PRK14809 230 RLGYAVVP-EEWADAYARVNTPFAASELACRAGLAALDDD----EHVERTVETARWAREYIREELDAPTW----ESAGNF 300 (357)
T ss_pred hheeeecC-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHhcCccC----CCCCCE
Confidence 99999994 5666666666666778899999998888753 45777888899999999999975422 567789
Q ss_pred EEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 366 CWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
+|++++. +.++++.|.++ ||.|.||+.|+. ++++||+++. .+++++++++|+++++
T Consensus 301 ~~~~~~~---------~~~~~~~l~~~-gv~v~~g~~f~~--~~~iRls~~~--~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 301 VLAEVGD---------ASAVAEAAQER-GVIVRDCTSFGL--PECIRITCGT--REETERAVEVLNEVLA 356 (357)
T ss_pred EEEECCC---------HHHHHHHHHHC-CEEEEECccCCC--CCeEEEecCC--HHHHHHHHHHHHHHhc
Confidence 9998852 46778777554 999999999863 5799999975 6889999999998864
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=379.54 Aligned_cols=347 Identities=19% Similarity=0.347 Sum_probs=273.4
Q ss_pred hhhhhhcCCCCCCCCCCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHH
Q 046900 32 GWKAYDENPYEESTNPSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQ 110 (442)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~ 110 (442)
.|..+.........++.++|+|+.+++..+ .+.+.+.+.+.. ....|+++.|.++||+++++|+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~-------------~~~~Y~~~~G~~~lr~~ia~~~~~ 71 (357)
T TIGR03539 5 PWDSLAPYKAKAASHPDGIVDLSVGTPVDPVPPLIRAALAAAA-------------DAPGYPQTWGTPELREAIVDWLER 71 (357)
T ss_pred hHHHHHHHHHHhhhCCCCeEEccCCCCCCCCCHHHHHHHHHHH-------------hhCCCCcccCCHHHHHHHHHHHHH
Confidence 355555444445566778899999876554 345555554332 134699999999999999999998
Q ss_pred HhCCCCc-cCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHH
Q 046900 111 IRGGRAK-FDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALE 188 (442)
Q Consensus 111 ~~~~~~~-~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~ 188 (442)
+++ +. +++++|++|+|+++++..++..+ +++||.|++++|+|+.+...++. .|++++.++ |++.+.
T Consensus 72 ~~~--~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~v~---------~~~~l~ 139 (357)
T TIGR03539 72 RRG--VPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALL-AGATPVAAD---------DPTELD 139 (357)
T ss_pred hcC--CCCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHh-cCCEEeccC---------ChhhcC
Confidence 766 44 78999999999999999998888 79999999999999999988884 899988774 223322
Q ss_pred HHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCC
Q 046900 189 AAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSE 268 (442)
Q Consensus 189 ~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~ 268 (442)
. .+++++++++|+||||.+++.+++++|+++|+++|++||+||+|.++.|++.. .+. +.........+
T Consensus 140 ~---------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~-~~~--~~~~~~~~~~~ 207 (357)
T TIGR03539 140 P---------VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRP-VSI--LDPRVCGGDHT 207 (357)
T ss_pred c---------cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCC-ccc--eecccCCCccc
Confidence 1 26789999999999999999999999999999999999999999998876532 221 11100000136
Q ss_pred cEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Q 046900 269 RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMI 346 (442)
Q Consensus 269 ~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 346 (442)
++++++||||.||++|+|+||++++ +.+.+.+.+... .+.++.+.|.++..++.+. +++++.++.++++++++
T Consensus 208 ~vi~~~S~SK~~~~~G~R~G~~i~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~ 282 (357)
T TIGR03539 208 GLLAVHSLSKRSNLAGYRAGFVAGD-PALVAELLTVRKHAGLMVPAPVQAAMVAALGDD----GHVAEQKARYAARRAQL 282 (357)
T ss_pred cEEEEeccccccCCCceeEEEEecC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999984 566655554332 3567889999999999763 34677888999999999
Q ss_pred HHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHH
Q 046900 347 IEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVA 426 (442)
Q Consensus 347 ~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~ 426 (442)
.+.|++.|+.+.+|++|+|+|++++. ++.++++.|.++ ||.|.||..|+...++++||+++. ++++++++
T Consensus 283 ~~~L~~~g~~~~~p~~~~~~~~~~~~--------~~~~~~~~l~~~-gV~v~pg~~f~~~~~~~iRis~~~-~~~~i~~~ 352 (357)
T TIGR03539 283 KPALEKAGFRIDHSEAGLYLWATRGE--------DAWDTVDRLAEL-GILVAPGDFYGPAGSQHVRVALTA-TDERIAAA 352 (357)
T ss_pred HHHHHHcCCCCcCCCccEEEEEECCC--------CHHHHHHHHHhC-CEEECCccccCCCCCCeEEEEecC-CHHHHHHH
Confidence 99999889888889999999999864 255677777554 999999998865556899999998 78999999
Q ss_pred HHHH
Q 046900 427 LKRI 430 (442)
Q Consensus 427 l~~l 430 (442)
+++|
T Consensus 353 ~~~l 356 (357)
T TIGR03539 353 VARL 356 (357)
T ss_pred HHhh
Confidence 9887
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=375.71 Aligned_cols=335 Identities=18% Similarity=0.291 Sum_probs=269.3
Q ss_pred CCCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEE
Q 046900 46 NPSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 46 ~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 124 (442)
++.++|+|+.++|++++ +.+.+.+.+... ....|++. ++.+||++||++++ +++++|+
T Consensus 18 ~~~~~i~l~~~~~~~~~p~~~~~a~~~~~~------------~~~~y~~~-~~~~lr~~ia~~~~--------~~~~~i~ 76 (356)
T PRK08056 18 SPDQLLDFSANINPLGMPVSLKRAIIDNLD------------CAERYPDV-EYRHLHQALARHHQ--------VPASWIL 76 (356)
T ss_pred ChhhEEEeccccCCCCCCHHHHHHHHHHHH------------hcccCcCc-cHHHHHHHHHHHhC--------cChhhEE
Confidence 34578999999999854 555555544321 12358764 68999999999974 6799999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++..+++++ .+|+ +++++|+|..|...++. .|++++.+|++++++|.+| +++++.+.+ ++|++
T Consensus 77 it~Ga~~~l~~~~~~l-~~g~-viv~~P~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~~-~~~~~~~~~------~~k~v 146 (356)
T PRK08056 77 AGNGETESIFAVVSGL-KPRR-AMIVTPGFAEYRRALQQ-VGCEIRRYSLREADGWQLT-DAILEALTP------DLDCL 146 (356)
T ss_pred ECCCHHHHHHHHHHHh-CCCC-EEEeCCCcHHHHHHHHH-cCCeEEEEecccccCCCcc-HHHHHhccC------CCCEE
Confidence 9999999999999887 6776 77789999999988885 9999999999876778877 344444432 78899
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++..+.+. ... .+++++++||||.||++|
T Consensus 147 ~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~---~~~-----~~~~i~~~S~SK~~~~~G 218 (356)
T PRK08056 147 FLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ---LAD-----NPHLWVLRSLTKFYAIPG 218 (356)
T ss_pred EEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH---hcc-----CCCEEEEEechhhccCcc
Confidence 999999999999999999999999999999999999999987654322222 222 368999999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCce
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAG 363 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g 363 (442)
+|+||++++++.+.+.+++....+.++.+.|.++..++.+.. +.++.++.++++|+++.+.|++. ++.+.++ ++
T Consensus 219 ~RiG~~v~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-~~ 293 (356)
T PRK08056 219 LRLGYLVNSDDAAVARMRRQQMPWSINAFAALAGEVILQDRA----YQQATWQWLAEEGARFYQALCALPLLTVWPG-RA 293 (356)
T ss_pred hhheeeecCCHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC-CC
Confidence 999999986666666676656667788899999988887544 46777889999999999999887 7776655 56
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
+|+|++++. +..++++.|+++ ||.|+||+.|....++|+||+++. .++.+.+++.|+++++
T Consensus 294 ~~~~~~~~~--------~~~~~~~~l~~~-gI~v~~~~~f~~~~~~~iRis~~~--~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 294 NYLFLRCER--------PDIDLQRALLTQ-RILIRSCANYPGLDSRYYRVAIRS--AAENERLLAALRNVLT 354 (356)
T ss_pred cEEEEEcCC--------ChHHHHHHHHHC-CeEEEECCCCCCCCCCEEEEEEcC--HHHHHHHHHHHHHHHc
Confidence 799999874 145788888765 999999999965556799999985 6778999999887754
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-48 Score=376.32 Aligned_cols=341 Identities=19% Similarity=0.268 Sum_probs=268.4
Q ss_pred ceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEec
Q 046900 49 GVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA 127 (442)
Q Consensus 49 ~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~ 127 (442)
.+++|+.++|++++ +.+.+.+.+..... .....|++ .|.++||++||+|+++.++.++.+++++|++|+
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~Y~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~ 98 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQG---------IESNRYPD-GGHEALKQAIAEYVNESAAGSSQITPANISVGN 98 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhc---------ccccCCCC-CchHHHHHHHHHHhCccccccCCCCHHHEEEcC
Confidence 47899999998753 55565555432110 01246865 699999999999999876544668999999999
Q ss_pred ChHHHHHHHHHhhcCCCC-eEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 128 GATAANELLTFILADPGD-ALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 128 G~~~ai~~~~~~l~~~gd-~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
|+++++..++.+++.+|| .|++++|+|+.|...++. .|++++.+++++ ++|.+|+++|++.+++.. ..++|++++
T Consensus 99 Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~-~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~--~~~~k~i~l 174 (374)
T PRK02610 99 GSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQT-LGIPVVRVGRDP-ETFEIDLAAAQSAIEQTQ--NPPVRVVFV 174 (374)
T ss_pred ChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHH-cCCEEEEecCCc-ccCCCCHHHHHHHHHhhc--CCCceEEEE
Confidence 999999988888877886 899999999999999985 999999999864 358899999999886421 137899999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
||||||||.+++.+++++++++| ++++||+||+|.+|.+. .++..+.. .+++|+++||||.||+||+|
T Consensus 175 ~~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~----~~~~~~~~------~~~~ivi~SfSK~~g~~GlR 242 (374)
T PRK02610 175 VHPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQT----TLVGELAQ------HPNWVILRTFSKAFRLAAHR 242 (374)
T ss_pred eCCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCcc----chHHHHhc------CCCEEEEEecchhccCcccc
Confidence 99999999999999999999977 48999999999987532 12222322 36789999999999999999
Q ss_pred eEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEE
Q 046900 287 VGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLF 365 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~ 365 (442)
+||+++ ++.+.+.+.+....+.++.++|.++..++++. +.+++.+++.++ +|+.+.+.|+++ ++.+ .|.+|+|
T Consensus 243 iG~~v~-~~~l~~~l~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~-~r~~l~~~L~~~~~~~~-~p~~g~f 316 (374)
T PRK02610 243 VGYAIG-HPELIAVLEKVRLPYNLPSFSQLAAQLALEHR---QELLAAIPEILQ-ERDRLYQALQELPQLRV-WPSAANF 316 (374)
T ss_pred eeeeec-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH---HHHHHHHHHHHH-HHHHHHHHHHhCCCcEe-CCCcceE
Confidence 999998 56677777766656778999999999998864 345555555554 477788899876 6665 4778899
Q ss_pred EEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 366 CWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+|++++... ++.++++.|.++ ||.|.++ ++++||+++. .+++++++++|++++.++
T Consensus 317 ~~~~l~~~~------~~~~~~~~l~~~-gi~v~~~-------~~~lRls~~~--~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 317 LYLRLSQDA------ALAALHQALKAQ-GTLVRHT-------GGGLRITIGT--PEENQRTLERLQAALTQL 372 (374)
T ss_pred EEEeCCCCC------CHHHHHHHHHHC-CEEEEeC-------CCeEEEeCCC--HHHHHHHHHHHHHHHhhc
Confidence 999998632 257788887555 9999863 4689999986 467899999999998754
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-48 Score=370.55 Aligned_cols=315 Identities=15% Similarity=0.250 Sum_probs=253.5
Q ss_pred ceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecC
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAG 128 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G 128 (442)
.+|+|+.|+|+++. . .....||++ -..+||+++|+|++ +++++|++|+|
T Consensus 17 ~~i~l~~Nenp~~~----------~------------~~~~~Yp~~-~~~~lr~~ia~~~~--------~~~~~I~it~G 65 (332)
T PRK06425 17 RIIDFSANINDFMD----------I------------GDISIYPEI-SYTDIEDQIKIYTQ--------GLKIKVLIGPG 65 (332)
T ss_pred CEEEeccccCCCcC----------h------------hhcccCcCc-CHHHHHHHHHHHhC--------CCcceEEECCC
Confidence 57999999999841 0 124569876 46999999999986 67999999999
Q ss_pred hHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeC
Q 046900 129 ATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITN 208 (442)
Q Consensus 129 ~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~ 208 (442)
+++++.+++. ++++|+ |++++|+|+.|...++. .|++++.+|++. +.+|.+.+++ .++|++++||
T Consensus 66 s~~~l~~~~~-~~~~~~-vv~~~P~y~~y~~~~~~-~G~~v~~vp~~~---~~~~~~~l~~---------~~~k~v~l~n 130 (332)
T PRK06425 66 LTHFIYRLLS-YINVGN-IIIVEPNFNEYKGYAFT-HGIRISALPFNL---INNNPEILNN---------YNFDLIFIVS 130 (332)
T ss_pred HHHHHHHHHH-HhCCCc-EEEeCCChHHHHHHHHH-cCCeEEEEeCCc---ccCcHHHHhh---------cCCCEEEEeC
Confidence 9999999997 457765 66779999999999995 999999999874 3356554432 1778999999
Q ss_pred CCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeE
Q 046900 209 PSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVG 288 (442)
Q Consensus 209 P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG 288 (442)
||||||.+++.+++++|+++|++++++||+||+|.++.+++. .+...+... .++||+++||||.||+||+|+|
T Consensus 131 P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~--~~~~~~~~~-----~~~vi~~~SfSK~~~l~GlRiG 203 (332)
T PRK06425 131 PDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRA--EEDVLLNRS-----YGNVIIGRSLTKILGIPSLRIG 203 (332)
T ss_pred CCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccc--hhHHHHhcc-----CCCEEEEeecHHhcCCchhhhe
Confidence 999999999999999999999999999999999999886542 244444432 4789999999999999999999
Q ss_pred EEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEE
Q 046900 289 TIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWM 368 (442)
Q Consensus 289 ~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~ 368 (442)
|+++ ++.+.+.+.+....+.++.+++.+ +..... +.++++.++.++++|+++.+.|++.|+.+..+.+|+|+|+
T Consensus 204 y~v~-~~~li~~l~~~~~~~~~~~~~~~~----l~~~~~-~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~g~f~~~ 277 (332)
T PRK06425 204 YIAT-DDYNMKISRKITEPWSVCDPAIDF----IRSIDL-DYVAKHSLDIMENERSYLINNLEAMGFRAAGDPSANFITF 277 (332)
T ss_pred eeec-CHHHHHHHHHcCCCCccCHHHHHH----HHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCceEEEE
Confidence 9999 466777777766666566554433 322222 4567788999999999999999998888765556779999
Q ss_pred ecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 369 NLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
+++. +.++++.|+++ ||.|+||+.|+..+++|+||+++. .++++++++.|++++
T Consensus 278 ~~~~---------~~~~~~~l~~~-gi~v~~~~~f~~~~~~~iRis~~~--~~~~~~l~~al~~~~ 331 (332)
T PRK06425 278 MIPD---------AHDFYSYLLKN-GILVRLLDDYECLGEQYIRIAIRR--RSFNIKLVNALRNFL 331 (332)
T ss_pred EcCC---------HHHHHHHHHHC-CeEEEECCCCCCCCCCEEEEEeCC--HHHHHHHHHHHHHHh
Confidence 9862 56888888876 999999999965556899999996 678999999998765
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-48 Score=376.67 Aligned_cols=334 Identities=18% Similarity=0.268 Sum_probs=272.6
Q ss_pred CCceeeeecccccc-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQV-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|+|+.++|++ +++.+.+.+.+.. ....+|++..| .+||+++|++++ +++++|++
T Consensus 35 ~~~~i~l~~~~~~~~~~~~~~~al~~~~------------~~~~~Y~~~~g-~~lr~~ia~~~~--------~~~~~i~~ 93 (371)
T PRK05166 35 VPRIAKLGSNENPLGPSPAVRRAFADIA------------ELLRLYPDPQG-RALREAIAARTG--------VPADRIIL 93 (371)
T ss_pred CcceEEcCCCCCCCCCCHHHHHHHHHHH------------HHhhcCCCCcH-HHHHHHHHHHhC--------cCHHHEEE
Confidence 45789999999986 4455666555432 12457999888 599999999874 57899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++..++.+++++||.|+++.|+|+.+...++. .|++++.++++. ++.+|++++++.+++ ++++++
T Consensus 94 t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~~~~~~-~g~~~~~v~~~~--~~~~~~~~l~~~~~~------~~~~v~ 164 (371)
T PRK05166 94 GNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTM-MGARVERVTVTP--DLGFDLDALCAAVAR------APRMLM 164 (371)
T ss_pred cCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHH-cCCeEEEeecCC--CCCCCHHHHHHhhhc------CCCEEE
Confidence 99999999999999999999999999999999888884 899999999875 357899999998865 678999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
++|||||||.+++.+++++|+++|++ +++||+||+|.++.+++ ...+......+ ..+++|+++||||.||++|+
T Consensus 165 l~~p~NPtG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~-~~~~~~~~~~~----~~~~vi~i~SfSK~~~l~Gl 238 (371)
T PRK05166 165 FSNPSNPVGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGD-DYPSALTLLKA----RGLPWIVLRTFSKAYGLAGL 238 (371)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCc-CcccHHHHHhh----cCCCEEEEeechHhhhcchh
Confidence 99999999999999999999999864 88999999999988644 33344444332 13689999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEE
Q 046900 286 RVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLF 365 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~ 365 (442)
|+||++++++.+.+.+.+....+.++.++|.++.+++.+.+ ++++.++.++++|+.+.+.|++.|+.+. +.+|+|
T Consensus 239 RiG~~i~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~g~~~~-p~~g~f 313 (371)
T PRK05166 239 RVGYGLVSDPELVGLLDRVRTPFNVNGAAQAAALAALDDEE----HLAKGVALALAERERLKKELAEMGYRIA-PSRANF 313 (371)
T ss_pred heeeeecCCHHHHHHHHHhccCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHCcCeeC-CCcCCE
Confidence 99998876778887777666667789999988888887644 4677778899999999999998888764 556789
Q ss_pred EEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 366 CWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
+|++++. ++.++++.|+++ ||.+.||..++ .++|+||+++. .++.+++++.|+.++
T Consensus 314 l~~~~~~--------~~~~l~~~l~~~-gi~v~p~~~~~--~~~~iRi~~~~--~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 314 LFFDARR--------PASAVAEALLRQ-GVIVKPWKQPG--FETFIRVSIGS--PEENDHFVAALDKVL 369 (371)
T ss_pred EEEeCCC--------CHHHHHHHHHHC-CeEEecCCCCC--CCCeEEEEcCC--HHHHHHHHHHHHHHh
Confidence 9999764 256888888876 99999997654 36899999996 556777777776654
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-48 Score=377.42 Aligned_cols=282 Identities=24% Similarity=0.371 Sum_probs=236.2
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc-CCCCeEEEcCCCCcChHHhHhhhcC
Q 046900 88 NALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA-DPGDALLVPTPYYPGFDRDLRWRTG 166 (442)
Q Consensus 88 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~~~G 166 (442)
..+|++..|.++||++||+|+.+++| +.+++++|++|+|+++++..++.+++ ++||.|++++|+|+.|...+.. .|
T Consensus 100 ~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~~-~g 176 (407)
T PLN02368 100 LGAYSDSRGLPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISL-LG 176 (407)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHHH-cC
Confidence 46799999999999999999998766 55789999999999999999999987 7999999999999999999985 99
Q ss_pred cEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 167 IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 167 ~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
++++.++++++++|.+|++.|++.+++...++.++|+++++|||||||.+++.+++++|+++|++|+++||+||+|.++.
T Consensus 177 ~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~ 256 (407)
T PLN02368 177 GTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNI 256 (407)
T ss_pred CEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 99999999887789999999999997543334478999999999999999999999999999999999999999999999
Q ss_pred CCCC-CcccHHHHHhhhc--CCCCCcEEEEecCcccC-CCCCceeEEEee--cCHHHHHHHHHcc-ccCCCcHHHHHHHH
Q 046900 247 FSSS-EFVSIAEILEARQ--YKDSERVHIVYSLSKDL-GLPGFRVGTIYS--YNDKVVTTARRMS-SFTLISSQTQYLLA 319 (442)
Q Consensus 247 ~~~~-~~~s~~~~~~~~~--~~~~~~vi~~~S~SK~~-g~~G~RiG~i~~--~~~~~~~~~~~~~-~~~~~s~~~q~~~~ 319 (442)
|++. .+.|+.++..++. ....+++|+++||||.| |+||||+||+++ .++.+.+.+.+.. ..+.+++++|.++.
T Consensus 257 y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~~~~~~~~~~Q~aa~ 336 (407)
T PLN02368 257 YQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVASIALSPNVSGQIFMG 336 (407)
T ss_pred cCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhcccCCCCcHHHHHHH
Confidence 9764 4667666532210 00135899999999998 899999999984 2455666655543 34667889999999
Q ss_pred HHhcCch----hH---HHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEEEEecCC
Q 046900 320 SMLSNKK----FT---ENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSP 372 (442)
Q Consensus 320 ~~l~~~~----~~---~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~ 372 (442)
+++.... .. .++++++++.|++||+.+.+.|++. |+.+..|+|+||+|++++-
T Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i~l 397 (407)
T PLN02368 337 LMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIKL 397 (407)
T ss_pred HHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCCCC
Confidence 9997531 11 2334567899999999999999987 9999999999999987654
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=373.39 Aligned_cols=334 Identities=19% Similarity=0.233 Sum_probs=258.7
Q ss_pred CCCCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcE
Q 046900 45 TNPSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRI 123 (442)
Q Consensus 45 ~~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i 123 (442)
..+.++|+|+.++|++++ +.+.+.+.+... ....|+++ +..+||++||+|++ +++++|
T Consensus 19 ~~~~~~i~l~~~~n~~~~~~~~~~a~~~~~~------------~~~~Y~~~-~~~~Lr~aia~~~~--------v~~~~I 77 (360)
T PRK07392 19 CPPDAILDFSASINPLGPPESVIAAIQSALS------------ALRHYPDP-DYRELRLALAQHHQ--------LPPEWI 77 (360)
T ss_pred CCcccEEEeCCcCCCCCCCHHHHHHHHHHHH------------HhhcCCCc-CHHHHHHHHHHHhC--------cChhhE
Confidence 335578999999998753 555555544321 24568876 46899999999983 689999
Q ss_pred EEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCC---cCCHHHHHHHHHHHHhcCCc
Q 046900 124 VVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNF---QITPQALEAAYKEAESKDMR 200 (442)
Q Consensus 124 ~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~---~~d~~~l~~~l~~~~~~~~~ 200 (442)
++|+|+++++.+++.++. +||.|++++|+|+.|...++. .|++++.++++.++++ ..+++.+++.. .+
T Consensus 78 ~it~G~~~~i~~~~~~l~-~g~~vlv~~P~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------~~ 148 (360)
T PRK07392 78 LPGNGAAELLTWAGRELA-QLRAVYLITPAFGDYRRALRA-FGATVKELPLPLDQPSPGLTLRLQTLPPQL-------TP 148 (360)
T ss_pred EECCCHHHHHHHHHHHhC-CCCeEEEECCCcHHHHHHHHH-cCCeEEEEecccccCCcccccCHHHHHHhc-------cC
Confidence 999999999999998875 689999999999999999995 9999999999876655 34455554432 26
Q ss_pred eeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccC
Q 046900 201 VRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDL 280 (442)
Q Consensus 201 ~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~ 280 (442)
+++++++|||||||.+++.+++.++ ++++++ +|+||+|.+|.+++. ..++...... .+++++++||||.|
T Consensus 149 ~~~~~l~nP~NPTG~~~~~~~l~~l---~~~~~~-~IiDE~y~~~~~~~~-~~s~~~~~~~-----~~~vi~i~S~SK~~ 218 (360)
T PRK07392 149 NDGLLLNNPHNPTGKLWSREAILPL---LEQFAL-VVVDEAFMDFLPPDA-EQSLIPCLAE-----YPNLIILRSLTKFY 218 (360)
T ss_pred CCEEEEeCCCCCCCCCcCHHHHHHH---HHHCCE-EEEECchhhhccCcc-ccchHHHhhc-----CCCEEEEEechhhh
Confidence 7899999999999999997766555 557775 666999999887653 3344443332 47899999999999
Q ss_pred CCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec
Q 046900 281 GLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK 359 (442)
Q Consensus 281 g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 359 (442)
|+||+|+||++++ +.+.+.+.+....+.++.++|.++.+++++..+ .++.++.++++|+.+.+.|++. |+.+.+
T Consensus 219 ~l~GlRiG~~v~~-~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ 293 (360)
T PRK07392 219 SLPGLRLGYAIAH-PDRLQRWQQWRDPWPVNGLAAAAAIAALADRDF----QQQTWAWLPPAREALFQGLASLPGLTPLP 293 (360)
T ss_pred cCCchheeeeeCC-HHHHHHHHhhCCCCCCCHHHHHHHHHHhccHHH----HHHHHHHHHHHHHHHHHHHHhCCCcEECC
Confidence 9999999999995 555566666666678899999999999987544 4556677899999999999876 777654
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
.+++|+|++++. ++.+++..+++++||.|.||..|+..+++|+||+++. .++.+++.+.|.+++
T Consensus 294 -~~~~fl~~~~~~--------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~--~~~~~~l~~al~~~~ 357 (360)
T PRK07392 294 -SAANFLLVQSQG--------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT--EAENQRLLEALAAIL 357 (360)
T ss_pred -CCCCEEEEEcCC--------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC--HHHHHHHHHHHHHHh
Confidence 778899999864 2568888887777999999999975556899999986 333455555555444
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-47 Score=371.56 Aligned_cols=345 Identities=25% Similarity=0.407 Sum_probs=280.3
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.++++|+.+.+.++ ++.+.+.+.+..... ......|++..|++++|+++++|+++.++ ..+++++|++|
T Consensus 33 ~~~~~l~~g~p~~~~~~~v~~a~~~~~~~~--------~~~~~~y~~~~g~~~lr~~ia~~l~~~~~--~~~~~~~i~~t 102 (394)
T PRK06836 33 DNVFDFSLGNPSVPPPAAVKEALRELAEEE--------DPGLHGYMPNAGYPEVREAIAESLNRRFG--TPLTADHIVMT 102 (394)
T ss_pred CCeEEecCcCCCCCCCHHHHHHHHHHHhcC--------CcCcccCCCCCCCHHHHHHHHHHHHHHhC--CCCCcCcEEEe
Confidence 46789998876543 455666554432110 01245798889999999999999998766 45789999999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+|+++++..++.+++++||.|++++|+|..+...++. .|++++.++++++ +|.+|++++++.+++ +++++++
T Consensus 103 ~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~~-~g~~v~~v~~~~~-~~~~d~~~l~~~~~~------~~~~v~~ 174 (394)
T PRK06836 103 CGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDN-HGGKLVVVPTDTD-TFQPDLDALEAAITP------KTKAVII 174 (394)
T ss_pred CChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHH-cCCEEEEEecCCc-cCcCCHHHHHhhcCc------CceEEEE
Confidence 9999999999999999999999999999999988884 8999999999764 478999999998864 7899999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHh------cCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccC
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATR------KNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDL 280 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~------~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~ 280 (442)
++|+||||.++|.+++++|+++|++ |+++||+||+|.++.+++....++.+. .+++++++||||.|
T Consensus 175 ~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~--------~~~~i~~~S~SK~~ 246 (394)
T PRK06836 175 NSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKY--------YDNSIVVYSFSKSL 246 (394)
T ss_pred eCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHc--------cCcEEEEecchhhc
Confidence 9999999999999999999999998 899999999999998876444444322 36899999999999
Q ss_pred CCCCceeEEEeecCHHHHHH---H---HHcc---ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046900 281 GLPGFRVGTIYSYNDKVVTT---A---RRMS---SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLR 351 (442)
Q Consensus 281 g~~G~RiG~i~~~~~~~~~~---~---~~~~---~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 351 (442)
|+||+|+||+++++ .+.+. . .... ..+.++++.|.++..++.+.. .++.++++++.+.+.|+
T Consensus 247 ~~pGlRiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--------~~~~~~~~r~~l~~~L~ 317 (394)
T PRK06836 247 SLPGERIGYIAVNP-EMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATV--------DVSIYKRNRDLLYDGLT 317 (394)
T ss_pred cCcceeeEEEecCH-HHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChH--------HHHHHHHHHHHHHHHHH
Confidence 99999999999954 33221 1 1111 224567889999999988631 24567888999999999
Q ss_pred hCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHH
Q 046900 352 SAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIH 431 (442)
Q Consensus 352 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~ 431 (442)
+.|+.+..+.+|+|+|++++.. ++.++++.|.+ +||.|.||+.|+. ++++||+++. +++++++++++|+
T Consensus 318 ~~g~~~~~~~gg~~~~~~~~~~-------~~~~~~~~l~~-~gv~v~~g~~f~~--~~~iRi~~~~-~~~~~~~~i~~l~ 386 (394)
T PRK06836 318 ELGFECVKPQGAFYLFPKSPEE-------DDVAFCEKAKK-HNLLLVPGSGFGC--PGYFRLSYCV-DTETIERSLPAFE 386 (394)
T ss_pred hCCCEeecCCceEEEEEeCCCC-------CHHHHHHHHHh-CCEEEECchhcCC--CCeEEEEecC-CHHHHHHHHHHHH
Confidence 9999999999999999988752 25677766655 5999999999863 5799999995 8999999999999
Q ss_pred HHHHHHH
Q 046900 432 NFMQKRE 438 (442)
Q Consensus 432 ~~l~~~~ 438 (442)
++++++.
T Consensus 387 ~~l~~~~ 393 (394)
T PRK06836 387 KLAKEYK 393 (394)
T ss_pred HHHHHhc
Confidence 9998764
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=373.56 Aligned_cols=328 Identities=16% Similarity=0.246 Sum_probs=268.6
Q ss_pred ceeeeecccccc-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEec
Q 046900 49 GVIQMGLAENQV-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA 127 (442)
Q Consensus 49 ~~i~l~~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~ 127 (442)
++|+|++++|++ +++.+.+.+.+... . ..|.+..|.+++|+++|+|++ +++++|++|+
T Consensus 30 ~~i~l~~n~~~~~~~~~v~~a~~~~~~------------~-~~~~p~~g~~~lr~~ia~~~~--------~~~~~i~~t~ 88 (359)
T PRK03158 30 KIVKLASNENPYGPSPKVKEAIAAHLD------------E-LALYPDGYAPELRTKVAKHLG--------VDEEQLLFGA 88 (359)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHH------------H-hhcCCCCcHHHHHHHHHHHhC--------CCHHHEEECC
Confidence 679999999988 44556665554321 1 233345689999999999984 6789999999
Q ss_pred ChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEe
Q 046900 128 GATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLIT 207 (442)
Q Consensus 128 G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~ 207 (442)
|+++++..++.+++++||.|++++|+|+.+...+.. .|++++.+|++ ++.+|++.+++.+.+ ++++++++
T Consensus 89 G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~~~~~~-~g~~~~~~~~~---~~~~d~~~l~~~~~~------~~~~v~i~ 158 (359)
T PRK03158 89 GLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAII-EGAEVREVPLK---DGGHDLEAMLKAIDE------QTKIVWIC 158 (359)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHH-cCCeEEEEecC---CCCcCHHHHHHhcCC------CCCEEEEe
Confidence 999999999999999999999999999999988884 89999999986 346899999887754 78899999
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee
Q 046900 208 NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV 287 (442)
Q Consensus 208 ~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri 287 (442)
|||||||.+++.+++.++++.|+ ++++||+||+|.++.+++... +....... .+++++++||||.||++|+|+
T Consensus 159 ~p~NPtG~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~-~~~~~~~~-----~~~vi~~~S~SK~~g~~GlRi 231 (359)
T PRK03158 159 NPNNPTGTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYP-DTLPLLEK-----YENLIVLRTFSKAYGLAALRV 231 (359)
T ss_pred CCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCcccc-cHHHHHHh-----cCCEEEEEechHhhcCcchhh
Confidence 99999999999999999998874 699999999999988754322 22233222 478999999999999999999
Q ss_pred EEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEE
Q 046900 288 GTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCW 367 (442)
Q Consensus 288 G~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~ 367 (442)
||+++ ++.+.+.+......+.+++++|.++.+++++.+ ++++.++.++++++.+.+.|++.|+.+.++ +|+|+|
T Consensus 232 G~~v~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~g~~i~ 305 (359)
T PRK03158 232 GYGIA-SEELIEKLNIARPPFNTTRIAQYAAIAALEDQA----FLKECVEKNAEGLEQYYAFCKEYGLFYYPS-QTNFIF 305 (359)
T ss_pred ehhcC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHCCCeeCCC-cCcEEE
Confidence 99999 566667776666667789999999999998654 456677778889999999998888877654 567999
Q ss_pred EecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHH
Q 046900 368 MNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~ 433 (442)
++++. ++.++++.|+++ ||.+.||+.|+ .++++||+++. .+++++++++|+++
T Consensus 306 ~~~~~--------~~~~~~~~l~~~-gv~v~~g~~f~--~~~~iRi~~~~--~~~~~~l~~al~~~ 358 (359)
T PRK03158 306 VDTGR--------DANELFEALLKK-GYIVRSGAALG--FPTGVRITIGL--KEQNDKIIELLKEL 358 (359)
T ss_pred EECCC--------CHHHHHHHHHHC-CeEEeeCCCCC--CCCeEEEecCC--HHHHHHHHHHHHHh
Confidence 98853 256888888775 99999999986 35799999985 77899999999875
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=369.69 Aligned_cols=344 Identities=18% Similarity=0.214 Sum_probs=268.4
Q ss_pred ccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCc-cCCCcEEEecChHHHHHHHHH
Q 046900 60 VSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAK-FDLNRIVVTAGATAANELLTF 138 (442)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~~~i~~t~G~~~ai~~~~~ 138 (442)
...+.+.+.+.+... ....+|+++.|.++||+++++++.+..+ ... .+.++|++|+|+++++.+++.
T Consensus 20 ~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~it~G~~~al~~~~~ 87 (388)
T PRK08637 20 MYLSSLQDLLNDLTP-----------DEIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNALTHGLSLVAD 87 (388)
T ss_pred chHHHHHHHHHhhcc-----------ccccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeEccchHHHHHHHHH
Confidence 445666665554321 2356899999999999999999876532 111 123689999999999999999
Q ss_pred hhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCC
Q 046900 139 ILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQ 218 (442)
Q Consensus 139 ~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~ 218 (442)
+++++||.|++++|+|+.|...+....|++++.+|+..+ ++++|++.+++.++... ....++++++|||||||.+++
T Consensus 88 ~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~-~~~~d~~~l~~~~~~~~--~~~~~~~~~~~P~NPTG~~~s 164 (388)
T PRK08637 88 LFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDE-DGGFDTDALKEALQAAY--NKGKVIVILNFPNNPTGYTPT 164 (388)
T ss_pred HhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccCC-CCcCCHHHHHHHHHhhc--cCCCEEEEEeCCCCCCCCCCC
Confidence 999999999999999999998754237999999998422 24589999999887211 114456788899999999999
Q ss_pred HHHHHHHHHHHHh-----cCcEEEEeccCCcCCCCCCCcccHHH-HHhhhcCCCCCcEE--EEecCcccCCCCCceeEEE
Q 046900 219 RSVLEELLDFATR-----KNIHLVSDEIYSGSAFSSSEFVSIAE-ILEARQYKDSERVH--IVYSLSKDLGLPGFRVGTI 290 (442)
Q Consensus 219 ~~~l~~l~~~~~~-----~~~~vi~De~y~~~~~~~~~~~s~~~-~~~~~~~~~~~~vi--~~~S~SK~~g~~G~RiG~i 290 (442)
.+++++|+++|++ |+++||+||+|.++.|++....++.. +... .++++ +++|+||.|++||+|+||+
T Consensus 165 ~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~-----~~~vi~i~~~s~SK~~~~pGlRlG~~ 239 (388)
T PRK08637 165 EKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANL-----HSNILAVKLDGATKEEFVWGFRVGFI 239 (388)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcc-----cccceEEEeccccccCCCcccceEEE
Confidence 9999999998875 89999999999999987755445432 2221 35654 4569999999999999999
Q ss_pred eecC-----HHHHHHHHHc------cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC----CC
Q 046900 291 YSYN-----DKVVTTARRM------SSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA----GI 355 (442)
Q Consensus 291 ~~~~-----~~~~~~~~~~------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~ 355 (442)
++++ +.+.+.+.+. ...+.+|.+.|.++..++.++.+ .+++++.+..++++++.+.+.|++. ++
T Consensus 240 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~ 318 (388)
T PRK08637 240 TFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEF-DKEKQEKFQILKERYEKTKEVLYDGKYDDAW 318 (388)
T ss_pred EEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 9753 5565555421 12356789999999999988765 5677788888999999999999765 57
Q ss_pred eeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 356 ECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 356 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
.+.+|++|+|+|++++.. ++.++++.|++++||.+.+. .++++||+++..+++++++++++|+++++
T Consensus 319 ~~~~~~~g~~~~~~l~~~-------~~~~l~~~l~~~~gv~~~~~------~~~~iRi~~~~~~~~~i~~~~~~l~~~~~ 385 (388)
T PRK08637 319 QAYPFNSGYFMCLKLKGV-------DAEELRVHLLEKYGIGTIAL------NETDLRIAFSCVEEEDIPELFDSIYKAIK 385 (388)
T ss_pred ccccccceEEEEecCChH-------HHHHHHHHHhhhcceEEEec------cCCceEEEeecCCHHHHHHHHHHHHHHHH
Confidence 788899999999999731 36788899887779988742 25789999997789999999999999997
Q ss_pred HH
Q 046900 436 KR 437 (442)
Q Consensus 436 ~~ 437 (442)
++
T Consensus 386 ~~ 387 (388)
T PRK08637 386 DL 387 (388)
T ss_pred hc
Confidence 64
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=366.07 Aligned_cols=327 Identities=18% Similarity=0.255 Sum_probs=264.0
Q ss_pred ceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecC
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAG 128 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G 128 (442)
+.++++.++|+++.+.. .. .....|+++. ..+||+++|+|++ +++++|++|+|
T Consensus 32 ~~~~~~~ne~~~~~~~~-----~~-------------~~~~~Y~~~~-~~~lr~~ia~~~~--------~~~~~I~~t~G 84 (364)
T PRK04781 32 GDVWLNANESAWANPAD-----PD-------------ASTRRYPDPQ-PPGLRSALAALYG--------CAPEQLLIGRG 84 (364)
T ss_pred CCEEeeCCCCCCCCChh-----hc-------------chhccCCCCC-HHHHHHHHHHHhC--------cChHHEEEeCC
Confidence 56899999998854311 00 1245788774 6999999999975 67999999999
Q ss_pred hHHHHHHHHHhhcCCC-CeEEEcCCCCcChHHhHhhhcCcEEEEEecCC-CCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 129 ATAANELLTFILADPG-DALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS-SNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 129 ~~~ai~~~~~~l~~~g-d~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~-~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+++++.+++.+++.+| |.|++++|+|..|...++. .|++++.+|++. +++|.+|++++.+.+.+ .+++++++
T Consensus 85 ~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-----~~~~lv~l 158 (364)
T PRK04781 85 SDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARL-QNAPLVEVPLVDGADGFHADVPAIVAAALA-----SNAKLVFL 158 (364)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHH-cCCEEEEEecCCCccCCCcCHHHHHHHHhc-----cCCeEEEE
Confidence 9999999999999999 7999999999999888774 899999999853 45788899988765532 27899999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
+|||||||.+++.+++++++++|+ ++++||+||+|.+|.+.. +...+... .+++|+++||||+||+||+|
T Consensus 159 ~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~----~~~~~~~~-----~~~vi~~~SfSK~~gl~GlR 228 (364)
T PRK04781 159 CSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDVP----SAVGLLAR-----YDNLAVLRTLSKAHALAAAR 228 (364)
T ss_pred cCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCCc----chHHHHhh-----CCCEEEEecChhhcccccce
Confidence 999999999999999999999986 478999999999987532 23333332 47899999999999999999
Q ss_pred eEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEE
Q 046900 287 VGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLF 365 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~ 365 (442)
+||+++ ++.+.+.+.+....+.++++.|.++..++.++.+ . +..+..+.++++|+.+.+.|+++ |+....|.+|+|
T Consensus 229 vGy~v~-~~~l~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~-~-~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f 305 (364)
T PRK04781 229 IGSLIA-NAELIAVLRRCQAPYPVPTPCAALAEQALSAPAL-A-VTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNF 305 (364)
T ss_pred eeeeeC-CHHHHHHHHhccCCCCCCHHHHHHHHHHHhcccH-H-HHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcE
Confidence 999998 5677788887777788899999999999987643 2 33445557899999999999887 665445677889
Q ss_pred EEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 366 CWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
+|++++. ..++.+.|.++ ||.|+||..|+. .++|+||+++. .++++++++.|+++.
T Consensus 306 ~~~~~~~---------~~~~~~~l~~~-gI~v~~~~~~~~-~~~~~Ris~~~--~~~~~~l~~al~~~~ 361 (364)
T PRK04781 306 LLVRFDD---------AEAAFQALLAA-GVVVRDQRAAPR-LSDALRITLGT--PEQNDRVLAALQRTQ 361 (364)
T ss_pred EEEEcCC---------HHHHHHHHHHC-CeEEeeCCCCCC-CCCeEEEeCCC--HHHHHHHHHHHHHHH
Confidence 9999863 45677777655 999999987753 46799999986 677888888888754
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=367.49 Aligned_cols=328 Identities=19% Similarity=0.250 Sum_probs=264.6
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|+|+.|+|+++ ++.+.+.+.... ....|+++ +..+||+++|+|++ +++++|++
T Consensus 51 ~~~~i~l~~n~~p~~~~~~v~~a~~~~~-------------~~~~Yp~~-~~~~lr~~ia~~~~--------~~~~~I~~ 108 (380)
T PLN03026 51 PEDIVKLDANENPYGPPPEVLEALGNMK-------------FPYVYPDP-ESRRLRAALAEDSG--------LESENILV 108 (380)
T ss_pred ccceEEccCCCCCCCCCHHHHHHHHhhH-------------hhccCCCC-CHHHHHHHHHHHhC--------cChhhEEE
Confidence 458899999999874 355555554321 12458765 68999999999985 67899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++..++.+++++||.|++++|+|+.|...++. .|++++.+++++ +|.+|++.|++.+.. .++++++
T Consensus 109 t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~~-~g~~~~~v~~~~--~~~~d~~~l~~~~~~-----~~~~~v~ 180 (380)
T PLN03026 109 GCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAV-NGAEVIKVPRTP--DFSLDVPRIVEAVET-----HKPKLLF 180 (380)
T ss_pred cCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHH-cCCEEEEeecCC--CCCcCHHHHHHHHhc-----cCCcEEE
Confidence 99999999999999999999999999999999888884 899999999853 578999999998832 2789999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+||||||||.+++.+++++|++.+ ++||+||+|.+|.+.+ +....... .+++++++||||.||++|+
T Consensus 181 l~~P~NPTG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~----~~~~~~~~-----~~~viv~~SfSK~~glaGl 247 (380)
T PLN03026 181 LTSPNNPDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQE----SRMKWVKK-----YDNLIVLRTFSKRAGLAGL 247 (380)
T ss_pred EeCCCCCCCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCc----chHHHHHh-----CCCEEEEecchHhhcCccc
Confidence 999999999999999999888753 8999999999987543 22222222 4889999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEE
Q 046900 286 RVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLF 365 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~ 365 (442)
|+||+++ ++.+.+.+.+....+.++.++|.++.++|.+.+ ++++.++.++++|+++.+.|++++.....|.+++|
T Consensus 248 RiGy~~~-~~~~i~~l~~~~~~~~~~~~~q~aa~~aL~~~~----~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~~~f 322 (380)
T PLN03026 248 RVGYGAF-PLSIIEYLWRAKQPYNVSVAAEVAACAALSNPK----YLEDVKNALVEERERLFGLLKEVPFLEPYPSDANF 322 (380)
T ss_pred cceeeec-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhhCHH----HHHHHHHHHHHHHHHHHHHHHHCCCCeECCCCCeE
Confidence 9999999 556667777766677889999999999997644 46778889999999999999988533335677889
Q ss_pred EEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHH
Q 046900 366 CWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~ 433 (442)
+|++++... ++.++++.|+++ ||.|++|+.+ ..++|+|||++. .++++++++.|+++
T Consensus 323 ~~~~~~~~~------~~~~~~~~l~~~-gI~v~~~~~~--~~~~~lRis~~~--~~~~~~l~~al~~~ 379 (380)
T PLN03026 323 ILCRVTSGR------DAKKLKEDLAKM-GVMVRHYNSK--ELKGYIRVSVGK--PEHTDALMEALKQL 379 (380)
T ss_pred EEEECCCCC------CHHHHHHHHHHC-CeEEEECCCC--CCCCEEEEecCC--HHHHHHHHHHHHHh
Confidence 999987522 256788888865 9999998763 246799999985 56788888877653
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=365.77 Aligned_cols=338 Identities=20% Similarity=0.262 Sum_probs=272.9
Q ss_pred ceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEec
Q 046900 49 GVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA 127 (442)
Q Consensus 49 ~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~ 127 (442)
..|+|+.++|++++ +.+.+.+.+..... ......|++ .|.+.||+++|+|+++.++ .++++++|++|+
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~--------~~~~~~Y~~-~g~~~lr~aia~~~~~~~~--~~~~~~~I~it~ 95 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEA--------AAGLNRYPD-RDAVALRADLAAYLTAQTG--VGLTVENVWAAN 95 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhh--------hhhhccCCC-CchHHHHHHHHHHhhhhcc--CCCChhhEEECC
Confidence 45899999999853 55666665442110 012457876 4889999999999998776 457899999999
Q ss_pred ChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEe
Q 046900 128 GATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLIT 207 (442)
Q Consensus 128 G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~ 207 (442)
|+++++.+++.+++++||.|+++.|+|+.|...+.. .|.+++.++.+ ++|.+|++.+++++.+ .++++++++
T Consensus 96 G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~~~~-~g~~~~~~~~~--~~~~~d~~~l~~~~~~-----~~~~~i~l~ 167 (368)
T PRK03317 96 GSNEILQQLLQAFGGPGRTALGFVPSYSMHPIIARG-THTEWVEGPRA--ADFTLDVDAAVAAIAE-----HRPDVVFLT 167 (368)
T ss_pred CHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHh-cCCeeEEcccC--CCCCCCHHHHHHHHhc-----cCCCEEEEe
Confidence 999999999999999999999999999999998884 89999888764 3578999999998864 267889999
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee
Q 046900 208 NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV 287 (442)
Q Consensus 208 ~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri 287 (442)
||+||||.+++.+++++|+++| +++||+||+|.++.+++. .+...+... .+++++++||||.||++|+|+
T Consensus 168 ~p~NPtG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~~--~~~~~~~~~-----~~~~i~~~SfSK~~g~~GlRi 237 (368)
T PRK03317 168 SPNNPTGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGT--PSALTLLPE-----YPRLVVSRTMSKAFAFAGGRL 237 (368)
T ss_pred CCCCCCCCCCCHHHHHHHHHHC---CceEEEeCCchhhcccCC--cCHHHHHHh-----CCCEEEEEechhhhccchhhh
Confidence 9999999999999999998877 689999999999876553 244444332 368999999999999999999
Q ss_pred EEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEE
Q 046900 288 GTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCW 367 (442)
Q Consensus 288 G~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~ 367 (442)
||+++ ++.+.+.+......+.+++++|.++.+++++.+. ..+.++.++++++.+.+.|++.|+.+..++++|++|
T Consensus 238 G~~~~-~~~~~~~l~~~~~~~~~s~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 312 (368)
T PRK03317 238 GYLAA-APAVVDALRLVRLPYHLSAVTQAAARAALRHADE----LLASVAALRAERDRVVAWLRELGLRVAPSDANFVLF 312 (368)
T ss_pred hhhhC-CHHHHHHHHhcCCCCCCCHHHHHHHHHHhhCHHH----HHHHHHHHHHHHHHHHHHHHHCCCEeCCCCCcEEEE
Confidence 99998 5677777776665677899999999999976332 334456688899999999999999888899999888
Q ss_pred EecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 368 MNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.+++. +.++++.|+++ ||.+.++. .++++||+++. .++++++++.|++++...
T Consensus 313 ~~~~~---------~~~~~~~l~~~-Gv~v~~~~-----~~~~iRi~~~~--~~~~~~~~~~l~~~~~~~ 365 (368)
T PRK03317 313 GRFAD---------RHAVWQGLLDR-GVLIRDVG-----IPGWLRVTIGT--PEENDAFLAALAEVLATE 365 (368)
T ss_pred eccCC---------HHHHHHHHHHC-CEEEEeCC-----CCCeEEEecCC--HHHHHHHHHHHHHHHHHh
Confidence 76542 56778887766 99998742 25799999985 678999999999987653
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=365.14 Aligned_cols=334 Identities=18% Similarity=0.229 Sum_probs=269.8
Q ss_pred ceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEec
Q 046900 49 GVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA 127 (442)
Q Consensus 49 ~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~ 127 (442)
.+|+|+.|+|+++. +.+.+.+.+... ....|+++ +.++||++||+|++ +++++|++|+
T Consensus 33 ~~~~l~~~~~~~~~~~~~~~a~~~~~~------------~~~~Y~~~-~~~~Lr~~ia~~~~--------~~~~~I~it~ 91 (369)
T PRK08153 33 FRARIGANESGFGPSPSVIAAMREAAA------------EIWKYGDP-ENHDLRHALAAHHG--------VAPENIMVGE 91 (369)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHH------------HhhcCCCC-ccHHHHHHHHHHhC--------CCHHHEEEcC
Confidence 45799999998853 455555544321 13468776 57999999999974 6789999999
Q ss_pred ChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEe
Q 046900 128 GATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLIT 207 (442)
Q Consensus 128 G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~ 207 (442)
|+++++..++.+++++||.|++++|+|+.+...+.. .|++++.+|++.+ .+|++.+++.+.. .++++++++
T Consensus 92 G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~-~g~~~~~vp~~~~---~~~~~~l~~~~~~-----~~~~~i~l~ 162 (369)
T PRK08153 92 GIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYHVAG-FGGRLVTVPYRDD---REDLDALLDAARR-----ENAPLVYLA 162 (369)
T ss_pred CHHHHHHHHHHHhcCCCCEEEECCCcchHHHHHHHH-cCCeEEEeeCCCC---CCCHHHHHHHhcc-----cCCcEEEEe
Confidence 999999999999999999999999999999988885 8999999998643 3788888776642 267899999
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee
Q 046900 208 NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV 287 (442)
Q Consensus 208 ~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri 287 (442)
||+||||.++|.+++++|+++|+ ++++||+||+|.++.+++. ..+ +... .+++++++||||.||+||+|+
T Consensus 163 ~P~NPtG~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~-~~~---~~~~-----~~~~i~~~SfSK~~g~~GlRi 232 (369)
T PRK08153 163 NPDNPMGSWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAGA-APP---IDTD-----DPNVIRMRTFSKAYGLAGARV 232 (369)
T ss_pred CCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCccc-chh---hhhc-----CCCEEEEecchHhccCcchhe
Confidence 99999999999999999999987 4899999999999877542 222 2222 368999999999999999999
Q ss_pred EEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEE
Q 046900 288 GTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCW 367 (442)
Q Consensus 288 G~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~ 367 (442)
||+++ ++.+.+.+.+....+.+++++|.++..++++.+ ++++.++.++++|+.+.+.|++.|+.+. |.+++|+|
T Consensus 233 G~~v~-~~~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~~----~~~~~~~~~~~~r~~~~~~L~~~g~~~~-p~~~~f~~ 306 (369)
T PRK08153 233 GYAIG-APGTIKAFDKVRNHFGMNRIAQAAALAALKDQA----YLAEVVGKIAAARDRIAAIARANGLTPL-PSATNFVA 306 (369)
T ss_pred eeeec-CHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHCCCccC-CCcCcEEE
Confidence 99999 566777776666667889999999999997644 4677888999999999999998888754 67788999
Q ss_pred EecCCcccccChhhHHHHHHHHHHcCcEEEe-CCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 368 MNLSPLLEEQTREGELALWDSMLHEVKLNIS-PGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~-pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
++++... ..+.+++++|+++ ||.++ ||.. ..++++||+++. +++++.+++.|.+++..+++
T Consensus 307 ~~~~~~~-----~~a~~l~~~l~~~-Gi~v~~p~~~---~~~~~iRis~~~--~~~~~~~~~al~~~~~~~~~ 368 (369)
T PRK08153 307 IDCGRDG-----AFARAVLDGLIAR-DIFVRMPGVA---PLDRCIRVSCGP--DEELDLFAEALPEALEAARK 368 (369)
T ss_pred EECCCCc-----ccHHHHHHHHHHC-CeEEeeCCCC---CCCCeEEEecCC--HHHHHHHHHHHHHHHHHhhc
Confidence 9886311 1367888888776 99995 6542 235799999985 78899999999999886654
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=364.65 Aligned_cols=320 Identities=19% Similarity=0.301 Sum_probs=262.5
Q ss_pred ceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecC
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAG 128 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G 128 (442)
+.|+|+.|+|+++++.. +. . .....||+.. ..+|+++++++++ +++++|++|+|
T Consensus 29 ~~~~l~~Nenp~~~~~~---~~-~-------------~~~~~Yp~~~-~~~l~~~~a~~~g--------~~~~~I~~~~G 82 (351)
T PRK01688 29 GDVWLNANEYPTAVEFQ---LT-Q-------------QTLNRYPECQ-PKAVIENYAAYAG--------VKPEQVLVSRG 82 (351)
T ss_pred CceEecCCCCCCCCChh---hc-c-------------cccccCCCCC-hHHHHHHHHHHhC--------CCHHHEEEcCC
Confidence 46899999999875421 10 0 1246798764 4799999998865 68999999999
Q ss_pred hHHHHHHHHHhhcCCC-CeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEe
Q 046900 129 ATAANELLTFILADPG-DALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLIT 207 (442)
Q Consensus 129 ~~~ai~~~~~~l~~~g-d~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~ 207 (442)
+++++.+++++++++| |.|+++.|+|+.|...++. .|++++.+|+++ +|.+|++.+++++ + +++++++|
T Consensus 83 s~e~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~~-~G~~~~~v~~~~--~~~~d~~~l~~~~-~------~~~lv~l~ 152 (351)
T PRK01688 83 ADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAET-IGVEIRTVPTLD--NWQLDLPAIADNL-D------GVKVVYVC 152 (351)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHHH-cCCEEEEeecCC--CCCCCHHHHHHhc-c------CCcEEEEe
Confidence 9999999999999997 9999999999999998885 999999999864 4889999998876 2 67899999
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee
Q 046900 208 NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV 287 (442)
Q Consensus 208 ~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri 287 (442)
|||||||.+++.+++++|++.|++ +.+||+||+|.+|... .+...+... .+++++++||||.||++|+|+
T Consensus 153 nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~----~s~~~~~~~-----~~n~iv~rSfSK~~glaGlRi 222 (351)
T PRK01688 153 SPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEFCPQ----ASLAGWLAE-----YPHLVILRTLSKAFALAGLRC 222 (351)
T ss_pred CCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCCC----CChHHHHhh-----CCCEEEEecchHhhcCHHHHH
Confidence 999999999999999999999976 6889999999997522 244444443 479999999999999999999
Q ss_pred EEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEE
Q 046900 288 GTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFC 366 (442)
Q Consensus 288 G~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~ 366 (442)
||+++ ++.+.+.+++....+.++.++|.++.++|.+.. .+++++.++.++++|+++.+.|+++ ++....|.+++|+
T Consensus 223 Gy~i~-~~~~i~~l~~~~~~~~v~~~~~~~a~~~L~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi 299 (351)
T PRK01688 223 GFTLA-NEEVINLLLKVIAPYPLSTPVADIAAQALSPQG--IAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYI 299 (351)
T ss_pred hHHhC-CHHHHHHHHhccCCCCCCHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEE
Confidence 99998 567777788777778889888988888887643 2456777888899999999999987 6654445667799
Q ss_pred EEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHH
Q 046900 367 WMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRI 430 (442)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l 430 (442)
|++++. +.++++.|+++ ||.|+++..|.. .++|+||+++. .++++++++.|
T Consensus 300 ~~~~~~---------~~~l~~~L~~~-gi~vr~~~~~~~-~~~~iRis~~~--~~e~~~l~~al 350 (351)
T PRK01688 300 LARFTA---------SSAVFKSLWDQ-GIILRDQNKQPG-LSNCLRITIGT--REECQRVIDAL 350 (351)
T ss_pred EEEcCC---------HHHHHHHHHHC-CeEEEECCCcCC-CCCeEEEeCCC--HHHHHHHHHhh
Confidence 998863 56788888776 999998776642 36799999985 68899998876
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=365.20 Aligned_cols=346 Identities=17% Similarity=0.266 Sum_probs=260.1
Q ss_pred CCceeeeeccc-ccc-c----HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC
Q 046900 47 PSGVIQMGLAE-NQV-S----FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120 (442)
Q Consensus 47 ~~~~i~l~~~~-n~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 120 (442)
....|+|+.+. +.. + .+.+.+........ ....+|++..|.++||+++++|+.+... ...++
T Consensus 47 ~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~----------~~~~~Y~~~~G~~~LR~aia~~~~~~~~--~~~~~ 114 (423)
T PLN02397 47 SPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAG----------SRNKEYLPIEGLAEFNKLSAKLAYGADS--PAIKE 114 (423)
T ss_pred CcceEecccceeeCCCCCcccchHHHHHHHHhhcc----------CCCCCCCCcCCCHHHHHHHHHHHcCCCC--chhhc
Confidence 34668888875 222 1 23455443332110 1245799999999999999999965422 11223
Q ss_pred Cc-----EEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHH
Q 046900 121 NR-----IVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAE 195 (442)
Q Consensus 121 ~~-----i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~ 195 (442)
++ |+.++|+.+ +...+..++.|||+|++++|+|+.|...++. .|++++.+|+..+++|++|++.+++.+++.
T Consensus 115 ~~i~~~~i~~g~Ga~~-l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~-~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~- 191 (423)
T PLN02397 115 NRVATVQCLSGTGSLR-LGAEFLARFYPGSTIYIPNPTWGNHHNIFRD-AGVPVRTYRYYDPKTRGLDFDGLLEDLKAA- 191 (423)
T ss_pred CeeEeeecccchHHHH-HHHHHHHHhCCCCEEEEeCCCchhHHHHHHH-cCCeEEEeecccCcCCccCHHHHHHHHHhC-
Confidence 33 344444443 3333444556999999999999999999995 999999999844445889999999888642
Q ss_pred hcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC--CCcccHHHHHhhhcCCCCCcEEEE
Q 046900 196 SKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS--SEFVSIAEILEARQYKDSERVHIV 273 (442)
Q Consensus 196 ~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~--~~~~s~~~~~~~~~~~~~~~vi~~ 273 (442)
..+++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++ ..+.++..+... .+++|++
T Consensus 192 --~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~-----~~~vI~~ 264 (423)
T PLN02397 192 --PDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVED-----GHEILVA 264 (423)
T ss_pred --CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhc-----CCcEEEE
Confidence 1356788889999999999999999999999999999999999999999854 133444444332 3579999
Q ss_pred ecCcccCCCCCceeEEEe--ecCHHHHH----HHHHccc--cCCCcHHHHHHHHHHhcCchhHHHH---HHHHHHHHHHH
Q 046900 274 YSLSKDLGLPGFRVGTIY--SYNDKVVT----TARRMSS--FTLISSQTQYLLASMLSNKKFTENY---IKTNRERLQKR 342 (442)
Q Consensus 274 ~S~SK~~g~~G~RiG~i~--~~~~~~~~----~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~---~~~~~~~~~~~ 342 (442)
+||||.|+++|||+||++ ++++.+.+ .+..... ...++.+.|.+++.++.++++.+.+ ++++++.++++
T Consensus 265 ~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~r 344 (423)
T PLN02397 265 QSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISM 344 (423)
T ss_pred EECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999985 44444332 2333222 2345778999999999887544444 67889999999
Q ss_pred HHHHHHHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecC
Q 046900 343 YQMIIEGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANM 418 (442)
Q Consensus 343 ~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~ 418 (442)
|+.+.+.|++.| +++..|+||||+|++++ .++++.|++++||.+.+ .+ |++++..
T Consensus 345 r~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~-----------~~~~~~Ll~~~~V~v~~--------~~--Ri~~~~~ 403 (423)
T PLN02397 345 RQKLYDALEARGSPGDWSHITKQIGMFSFTGLN-----------KEQVDRMTKEYHIYMTR--------DG--RISMAGL 403 (423)
T ss_pred HHHHHHHHHhcCCCCCCCcccCCceEEEecCCC-----------HHHHHHHHHhCCEEECC--------CC--eEEEeeC
Confidence 999999999887 77888999999999874 24888999999999973 23 9999866
Q ss_pred CHHHHHHHHHHHHHHHH
Q 046900 419 SEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 419 ~~e~i~~~l~~l~~~l~ 435 (442)
+++.+++++++|++++.
T Consensus 404 ~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 404 SSKNVPYLADAIHAVVT 420 (423)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999975
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-46 Score=360.90 Aligned_cols=329 Identities=18% Similarity=0.271 Sum_probs=264.9
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC-CcEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL-NRIV 124 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-~~i~ 124 (442)
+.++|+|+.++|+++ ++.+.+.+.+.... .....|++ .|.++||+++|+|++ +++ ++|+
T Consensus 25 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~Y~~-~~~~~lr~~ia~~~~--------~~~~~~I~ 85 (356)
T PRK04870 25 ATGMVKLDAMENPYRLPAELRAELGERLAE----------VALNRYPD-PRAAALKAALRAAMG--------VPAGADVL 85 (356)
T ss_pred CCCceeCcCCCCCCCCCHHHHHHHHHHhhc----------cccccCCC-CCHHHHHHHHHHHhC--------cCCCCcEE
Confidence 467899999999885 35566665544321 12457887 578999999999985 333 5899
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++..++.+++++||.|++++|+|..+...++. .|++++.+++++ +|.+|++.+++.+.+ .+++++
T Consensus 86 ~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~-~g~~~~~i~~~~--~~~~d~~~l~~~~~~-----~~~~~v 157 (356)
T PRK04870 86 LGNGSDELIQLLALACAKPGATVLAPEPGFVMYRMSAKL-AGLEFVGVPLTA--DFTLDLPAMLAAIAE-----HRPALV 157 (356)
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHH-cCCEEEEecCCC--CCCCCHHHHHHHhhc-----CCCCEE
Confidence 999999999999999999999999999999999998885 999999999874 478999999998864 278899
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
+++|||||||.+++.+++++|+++| ++++|+||+|.++.+. .+.+ .+.. .+++++++|||| +++||
T Consensus 158 ~l~~p~NPtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~--~~~~--~~~~------~~~vi~~~S~SK-~~~~G 223 (356)
T PRK04870 158 FLAYPNNPTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAGD--SWLP--RLAR------FPNLLVMRTVSK-LGLAG 223 (356)
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHHC---CCEEEEECCchhhcCc--chHH--HHhh------CCCEEEEecchh-hhhHH
Confidence 9999999999999999999999998 6789999999986532 1111 1222 468999999999 89999
Q ss_pred ceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCce
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAG 363 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g 363 (442)
+|+||+++ ++.+.+.+......+.++.++|.++..++++.+ ++++.++.++++++.+.+.|++. |+.+. +.+|
T Consensus 224 lRiG~~i~-~~~~i~~~~~~~~~~~~~~~~q~~a~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~ 297 (356)
T PRK04870 224 LRLGYLAG-HPAWIAELDKVRPPYNVNVLTQATALFALEHVD----VLDAQAAQLRAERTRLAAALAALPGVTVF-PSAA 297 (356)
T ss_pred HhhhhhhC-CHHHHHHHHHccCCCcCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCC
Confidence 99999999 456666666655567788899999888887543 35677788899999999999887 77665 4566
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
+|+|++++. ..+++..|.+ +||.|+||+.|+...++++||+++. .+++++++++|.+++
T Consensus 298 ~~~~~~~~~---------~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRis~~~--~~~~~~l~~al~~~~ 356 (356)
T PRK04870 298 NFILVRVPD---------AAAVFDGLKT-RGVLVKNLSGMHPLLANCLRVTVGT--PEENAQFLAALKAAL 356 (356)
T ss_pred eEEEEECCC---------HHHHHHHHHH-CCEEEEECCCCCCCCCCeEEEeCCC--HHHHHHHHHHHHHhC
Confidence 799999872 4567776655 5999999999865557899999996 677999999988753
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=357.56 Aligned_cols=325 Identities=20% Similarity=0.277 Sum_probs=259.5
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
..++|||+.++|+++ ++.+.+.+.+... ....|+++.|.++||+++|+|++ +++++|++
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~Y~~~~g~~~lr~aia~~~~--------~~~~~I~i 80 (349)
T PRK07908 21 GPGLLDFAVNVRHDTPPEWLRERLAARLG------------DLAAYPSTEDERRARAAVAARHG--------RTPDEVLL 80 (349)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHhh------------HhhcCCCccchHHHHHHHHHHhC--------cChhhEEE
Confidence 357899999999874 4556666665431 23569888899999999999974 67999999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++.+++. + ++| .++++.|+|..+...++. .|++++.++++++ |.+|++.+. + ++++++
T Consensus 81 t~Ga~~al~~~~~-l-~~~-~viv~~P~y~~~~~~~~~-~G~~i~~v~~~~~--~~~d~~~l~----~------~~~~i~ 144 (349)
T PRK07908 81 LAGAAEGFALLAR-L-RPR-RAAVVHPSFTEPEAALRA-AGIPVHRVVLDPP--FRLDPAAVP----D------DADLVV 144 (349)
T ss_pred CCCHHHHHHHHHh-c-CCC-eEEEeCCCChHHHHHHHH-cCCEEEeeccCcc--cCcChhHhc----c------CCCEEE
Confidence 9999999999988 4 565 577789999999988884 9999999999753 778887543 2 678999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
++|||||||.++|.+++. ++|+ ++.++|+||+|+++.. +. ..++.+. + .+++++++||||.||++|+
T Consensus 145 l~np~NPTG~~~~~~~l~---~l~~-~~~~iIvDe~y~~~~~-~~-~~~l~~~--~-----~~~~i~i~S~SK~~~l~Gl 211 (349)
T PRK07908 145 IGNPTNPTSVLHPAEQLL---ALRR-PGRILVVDEAFADAVP-GE-PESLAGD--D-----LPGVLVLRSLTKTWSLAGL 211 (349)
T ss_pred EcCCCCCCCCCcCHHHHH---HHHh-cCCEEEEECcchhhcc-CC-ccccccc--c-----CCCEEEEeecccccCCccc
Confidence 999999999999977655 4554 4778999999998754 32 3344332 1 3679999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEE
Q 046900 286 RVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLF 365 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~ 365 (442)
|+||+++ ++.+.+.+......+.++++.|.++.+++.+.. .+++++.++.++++|+++.+.|++.|+++..|.+|+|
T Consensus 212 RiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~~ 288 (349)
T PRK07908 212 RVGYALG-APDVLARLTRGRAHWPVGTLQLEAIAACCAPRA--VAEAAADAARLAADRAEMVAGLRAVGARVVDPAAAPF 288 (349)
T ss_pred eeeeeec-CHHHHHHHHhcCCCCCccHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHHHHHHhCCcEeccCCCceE
Confidence 9999998 566667776666667788888888888887432 4567888999999999999999988888888889999
Q ss_pred EEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 366 CWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
+|++++. ..++.+.| +++||.+.||+.|+...+++||||++. +++++++++.|++++.
T Consensus 289 ~~~~~~~---------~~~~~~~l-~~~gI~v~~g~~f~~~~~~~vRis~~~--~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 289 VLVRVPD---------AELLRKRL-RERGIAVRRGDTFPGLDPDYLRLAVRP--RAEVPVLVQALAEILK 346 (349)
T ss_pred EEEECCc---------HHHHHHHH-HhCCEEEEECCCCCCCCCCeEEEEeCC--CccHHHHHHHHHHHHh
Confidence 9999875 34566666 455999999999865457899999974 6779999999988764
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=359.47 Aligned_cols=325 Identities=18% Similarity=0.240 Sum_probs=262.7
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
+++|+|+.++|+++ ++.+.+.+.+... ....|++. +.++||++|+++++ +++++|++|
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~------------~~~~Y~~~-~~~~Lr~aia~~~~--------v~~e~I~it 101 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAA------------LSGRYDLE-LEDDLRTLFAAQEG--------LPADHVMAY 101 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHH------------HhcCCCCc-hHHHHHHHHHHHhC--------cChhhEEEc
Confidence 57899999999875 4555555544321 12358765 48999999999864 689999999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+|+++++.+++.+++++||.|++++|+|+.|...++. .|++++.+++++ +|.+|++.+++. . .+++++++
T Consensus 102 ~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~~~~~~-~g~~~~~v~~~~--~~~~d~~~l~~~-~------~~~~~v~l 171 (370)
T PRK09105 102 AGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWRAADA-QGAPVAKVPLRA--DGAHDVKAMLAA-D------PNAGLIYI 171 (370)
T ss_pred CChHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHH-cCCeEEEecCCC--CCCCCHHHHHhc-C------CCCCEEEE
Confidence 9999999999999999999999999999999998885 999999999865 467899998765 2 26789999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
||||||||.+++.++++++++.++ ++++||+||+|.+|.. . .+..++... .+++++++||||.||++|+|
T Consensus 172 ~nP~NPTG~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~--~--~s~~~~~~~-----~~~vi~~~SfSK~~g~~GlR 241 (370)
T PRK09105 172 CNPNNPTGTVTPRADIEWLLANKP-AGSVLLVDEAYIHFSD--A--PSVVDLVAQ-----RKDLIVLRTFSKLYGMAGMR 241 (370)
T ss_pred eCCCCCCCcCcCHHHHHHHHHhCC-CCcEEEEECchHHhcc--C--cchHHHHhh-----CCCEEEEecccHhhcCCccc
Confidence 999999999999999999999764 5899999999987542 1 244444432 47899999999999999999
Q ss_pred eEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEE
Q 046900 287 VGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFC 366 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~ 366 (442)
+||+++ ++.+.+.+... ..+.++.+.|.++.+++.+. +|+++.++.++++++.+.+.|++.|+++.+++++||
T Consensus 242 iG~~v~-~~~~i~~l~~~-~~~~~~~~~~~aa~~~L~~~----~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~f~- 314 (370)
T PRK09105 242 LGLAAA-RPDLLAKLARF-GHNPLPVPAAAAGLASLRDP----KLVPQRRAENAAVREDTIAWLKKKGYKCTPSQANCF- 314 (370)
T ss_pred eeeeec-CHHHHHHHHhc-CCCCcCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCcEE-
Confidence 999999 46666666655 44557888888888888764 357778889999999999999999998888888866
Q ss_pred EEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 367 WMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
|++++. +..++++.|+++ ||.+ |..|. ..++|+||+++. +++++++++.|++++
T Consensus 315 ~~~~~~--------~~~~l~~~L~~~-gI~v--~~~~~-~~~~~~Ris~~~--~~~~~~l~~al~~~~ 368 (370)
T PRK09105 315 MVDVKR--------PAKAVADAMAKQ-GVFI--GRSWP-IWPNWVRVTVGS--EEEMAAFRSAFAKVM 368 (370)
T ss_pred EEeCCC--------CHHHHHHHHHHC-CcEE--ecCCC-CCCCeEEEEcCC--HHHHHHHHHHHHHHh
Confidence 577752 257889999877 9998 44453 346899999985 677899998888765
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=357.49 Aligned_cols=348 Identities=20% Similarity=0.301 Sum_probs=276.8
Q ss_pred CCCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEE
Q 046900 46 NPSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 46 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 124 (442)
++.++|+|+.++|.++ ++.+.+.+.+.... .....|+++.|+++||+++|++++ +++++|+
T Consensus 26 ~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~----------~~~~~y~~~~g~~~lr~~ia~~l~--------~~~~~v~ 87 (380)
T PRK06225 26 KDKEMIWMGQNTNHLGPHEEVREAMIRCIEE----------GEYCKYPPPEGFPELRELILKDLG--------LDDDEAL 87 (380)
T ss_pred hcCCeEEccCCCCCCCCCHHHHHHHHHHHhc----------CCCCCCCCCcchHHHHHHHHHhcC--------CCCCcEE
Confidence 3567899999999875 45566655544321 123568888899999999999974 6788999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC-CCCCCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD-SSNNFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
+|+|+++++..++++++.+||.|++++|+|..+...+.. .|+++++++++ ++++|.+|++.+++.+.+ ++++
T Consensus 88 ~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~------~~~~ 160 (380)
T PRK06225 88 ITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASR-FGAEVIEVPIYSEECNYKLTPELVKENMDE------NTRL 160 (380)
T ss_pred EeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHH-hCceEEeeccccccCCccCCHHHHHhhcCC------CceE
Confidence 999999999999999999999999999999998888874 89999999975 344688999999998764 7889
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
+++++|+||||.+++.+++++|+++|+++|+++|+||+|.++..+. .+...+. .++++++.||||.+|++
T Consensus 161 v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~---~~~~~~~-------~~~~i~~~s~SK~~g~~ 230 (380)
T PRK06225 161 IYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH---TLAAEYA-------PEHTVTSYSFSKIFGMA 230 (380)
T ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC---CchhhcC-------CCCEEEEeechhhcCCc
Confidence 9999999999999999999999999999999999999998865322 2222221 36789999999999999
Q ss_pred CceeEEEeecCHHHHHHHHHcc-ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCee-ecC
Q 046900 284 GFRVGTIYSYNDKVVTTARRMS-SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIEC-LKG 360 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~ 360 (442)
|+|+||++++ +.+.+.+.... ..++.+.++|.++..++... .+++++.++.++++++.+.+.|++. |+.+ ..+
T Consensus 231 G~RiG~i~~~-~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 306 (380)
T PRK06225 231 GLRIGAVVAT-PDLIEVVKSIVINDLGTNVIAQEAAIAGLKVK---DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYP 306 (380)
T ss_pred cceeEEEecC-HHHHHHHHHHHhcccCCCHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCC
Confidence 9999999995 56666665443 23556888999888888643 3456677778888888899999874 5433 235
Q ss_pred CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC-CCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 361 NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS-EPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 361 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~-~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
.+|+|+|++++.... +..++++.|.++ ||.+.||..|+.. +++++|++++. +++++++++++|++++++.+.
T Consensus 307 ~~g~~~~~~~~~~~~-----~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~~iR~s~~~-~~e~l~~~~~~l~~~~~~~~~ 379 (380)
T PRK06225 307 SHGNMMVIDISEAGI-----DPEDLVEYLLER-KIFVRQGTYTSKRFGDRYIRVSFSI-PREQVEVFCEEFPDVVETLRT 379 (380)
T ss_pred CCCeEEEEEcccccC-----CHHHHHHHHHHC-CEEEcCCcccCcCCCCceEEEEeCC-CHHHHHHHHHHHHHHHHHhhc
Confidence 567789999865211 367888888765 9999999876532 35799999997 889999999999999987653
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=357.81 Aligned_cols=334 Identities=20% Similarity=0.293 Sum_probs=272.2
Q ss_pred CCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|+|++++|++++ +.+.+.+.+... ....|++..+ .+||+++|++++ +++++|++
T Consensus 31 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~------------~~~~y~~~~~-~~lr~~ia~~~~--------~~~~~i~~ 89 (367)
T PRK02731 31 IADIIKLASNENPLGPSPKAIEAIRAAAD------------ELHRYPDGSG-FELKAALAEKFG--------VDPERIIL 89 (367)
T ss_pred CCceEEecCCCCCCCCCHHHHHHHHHHHH------------hhcCCCCCcH-HHHHHHHHHHhC--------cCHHHEEE
Confidence 5578999999988743 445555544321 2356877654 799999999974 57899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++..++.+++++||.|++++|+|..+...+. ..|++++.++++ ++.+|++.+++.+++ ++++|+
T Consensus 90 t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-~~g~~~~~~~~~---~~~~~~~~l~~~~~~------~~~~v~ 159 (367)
T PRK02731 90 GNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQ-AVGAKPVEVPAK---DYGHDLDAMLAAVTP------RTRLVF 159 (367)
T ss_pred cCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHHHHHH-HcCCeEEEeccc---CCCCCHHHHHHHhCC------CCcEEE
Confidence 9999999999999999999999999999998888777 489999999874 467899999998864 788999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
++|||||||.+++.++++++++.|+ +++++|+||+|.++.+++....++ ..... .+++++++||||.||++|+
T Consensus 160 l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~-~~~~~-----~~~~i~~~S~SK~~g~~G~ 232 (367)
T PRK02731 160 IANPNNPTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGL-ELVAK-----FPNVVVTRTFSKAYGLAGL 232 (367)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHH-HHHhh-----cCCEEEEeeehHhhcCccc
Confidence 9999999999999999999999885 699999999999988755433333 22221 4789999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEE
Q 046900 286 RVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLF 365 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~ 365 (442)
|+||+++ ++.+.+.+++....+..++++|.++.+++++.+ ++++.++.++++++.+.+.|++.|+.+.+ .+|+|
T Consensus 233 RiG~l~~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~g~~ 306 (367)
T PRK02731 233 RVGYGIA-PPEIIDALNRVRQPFNVNSLALAAAVAALDDDA----FVEKSRALNAEGMAWLTEFLAELGLEYIP-SVGNF 306 (367)
T ss_pred ceeeeeC-CHHHHHHHHHccCCCCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHCCCccCC-CCceE
Confidence 9999999 566777777666667788999999999998643 46777888999999999999988888764 45679
Q ss_pred EEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 366 CWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
+|++++... ++.++++.|.++ ||.+.||..|+ .++++||+++. .++++++++.|+++++
T Consensus 307 ~~i~~~~~~------~~~~~~~~L~~~-gI~v~~~~~~~--~~~~iRis~~~--~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 307 ILVDFDDGK------DAAEAYQALLKR-GVIVRPVAGYG--LPNALRITIGT--EEENRRFLAALKEFLA 365 (367)
T ss_pred EEEECCCCC------CHHHHHHHHHHC-CEEEEeCCCCC--CCCeEEEecCC--HHHHHHHHHHHHHHHh
Confidence 999985432 367888888765 99999998885 35799999985 6789999999998864
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=355.61 Aligned_cols=325 Identities=17% Similarity=0.272 Sum_probs=259.6
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.++|+|+.++|+++ ++.+.+.+.+.... ....|++. |.++||++||+|++ +++++|++|
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~y~~~-~~~~lr~aia~~~~--------~~~~~I~it 83 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALGD-----------DLRLYPDP-NADALRQAIAAYYG--------LDPEQVFVG 83 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhhh-----------hhhcCCCC-cHHHHHHHHHHHhC--------CCHHHEEEc
Confidence 57899999999885 46666666544311 23578766 66999999999985 689999999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+|+++++.+++++++++||.|++++|+|+.|...++. .|++++.+++++ +|.+|++.+++ .++++++
T Consensus 84 ~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~-~g~~~~~v~~~~--~~~~d~~~l~~----------~~~~v~~ 150 (353)
T PRK05387 84 NGSDEVLAHAFLAFFNHDRPLLFPDITYSFYPVYAGL-YGIPYEEIPLDD--DFSIDVEDYLR----------PNGGIIF 150 (353)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHHHHHH-cCCEEEEeecCC--CCCCCHHHHHh----------cCCEEEE
Confidence 9999999999999999999999999999999888884 899999999864 47789998863 3468999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
+|||||||.++|.+++++|+++++ +++||+||+|.+| ++.. ...+... .+++++++||||.||++|+|
T Consensus 151 ~~P~NPtG~~~~~~~~~~l~~~~~--~~~livDe~y~~~--~~~~---~~~~~~~-----~~~~i~~~S~SK~~~~~GlR 218 (353)
T PRK05387 151 PNPNAPTGIALPLAEIERILAANP--DSVVVIDEAYVDF--GGES---AIPLIDR-----YPNLLVVQTFSKSRSLAGLR 218 (353)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCC--CcEEEEeCccccc--CCcc---hHHHHhh-----CCCEEEEEehhHhhcchhhh
Confidence 999999999999999999998754 8999999999874 3322 2222222 47799999999999999999
Q ss_pred eEEEeecCHHHHHHHHHccc---cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCce
Q 046900 287 VGTIYSYNDKVVTTARRMSS---FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG 363 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~~~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 363 (442)
+||+++ ++.+.+.+++... .+.++.+.|.++.+++.+.++ +++.++++.++++.+.+.|++.|+++. +.++
T Consensus 219 ~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~ 292 (353)
T PRK05387 219 VGFAIG-HPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAY----FEETRAKVIATRERLVEELEALGFEVL-PSKA 292 (353)
T ss_pred ceeeec-CHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHCCCeEC-CCcC
Confidence 999998 5666666665442 246788999999999876543 566788889999999999999888765 4567
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
+|+|++++.. ++.++++.|.++ ||.+.+... ...++++||+++. .+++++++++|++++.
T Consensus 293 ~~~~~~~~~~-------~~~~~~~~l~~~-gi~v~~~~~--~~~~~~iRis~~~--~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 293 NFVFARHPSH-------DAAELAAKLRER-GIIVRHFNK--PRIDQFLRITIGT--DEEMEALVDALKEILA 352 (353)
T ss_pred cEEEEECCCC-------CHHHHHHHHHHC-CEEEEECCC--CCCCCeEEEEeCC--HHHHHHHHHHHHHHhh
Confidence 7999998742 367888888666 999985322 1235799999985 6889999999998765
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=353.94 Aligned_cols=312 Identities=16% Similarity=0.228 Sum_probs=250.4
Q ss_pred CCceeeeecccccccHH--HHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEE
Q 046900 47 PSGVIQMGLAENQVSFD--LLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 124 (442)
+..+|+|+.|+|+++++ .+.. .....||+.. .+||+++|++++ + .++++|+
T Consensus 23 ~~~~i~ls~Nenp~~~~~~~~~~------------------~~~~~Yp~~~--~~L~~~ia~~~~------~-~~~~~I~ 75 (339)
T PRK06959 23 YDAWLDLSTGINPHGYPVPPVPA------------------DAWRRLPEDD--DGLAACAARYYG------A-PDAAHVL 75 (339)
T ss_pred hhhhceeccCCCCCCCCCCCCCH------------------HHHHhCCCch--HHHHHHHHHHhC------C-CCcccEE
Confidence 45789999999998654 1100 1235688753 899999999986 2 1358999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|++++|.++.. ++++|| |+++.|+|+.|...++. .|++++.++++. +.+. + .++++
T Consensus 76 i~~Gs~e~i~~l~~-~~~~g~-v~v~~P~y~~y~~~~~~-~g~~~~~v~~~~--------~~~~----~------~~~~v 134 (339)
T PRK06959 76 PVAGSQAAIRALPA-LLPRGR-VGIAPLAYSEYAPAFAR-HGHRVVPLDEAA--------DTLP----A------ALTHL 134 (339)
T ss_pred ECcCHHHHHHHHHH-hcCCCe-EEEcCCCcHHHHHHHHH-CCCEEEeecccc--------hhcc----c------cCCEE
Confidence 99999999998765 567877 88999999999999995 999999988642 2221 1 45689
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++||||||||.+++.+++++|++.|++++.++|+||+|.++.+. .++..+.. .+++++++||||.||+||
T Consensus 135 ~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~----~s~~~~~~------~~~vi~l~SfSK~~gl~G 204 (339)
T PRK06959 135 IVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA----ASLAAHTD------RPGLVVLRSVGKFFGLAG 204 (339)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc----ccchhccC------CCCEEEEecChhhcCCcc
Confidence 99999999999999999999999999899999999999997532 23433322 377999999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceE
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGL 364 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~ 364 (442)
+|+||+++ ++.+.+.+++....+.++.++|.++.++|++.++ .++.++.++++|+++.+.|++.|+++. .+++
T Consensus 205 lRiGy~v~-~~~li~~l~~~~~~~~vs~~~q~a~~~~L~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~~~--~~~~ 277 (339)
T PRK06959 205 VRAGFVLA-APALLAALRDALGAWTVSGPARHAVRAAFADAAW----QAAMRERLAADGARLAALLRAHGFAVH--ATPL 277 (339)
T ss_pred hheEEEec-CHHHHHHHHHhcCCCCCcHHHHHHHHHHhCcHHH----HHHHHHHHHHHHHHHHHHHHHCCCCcc--Ccce
Confidence 99999999 5677788877777788899999999999987554 567789999999999999999888765 3578
Q ss_pred EEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 365 FCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
|+|++++. +.++++.|.++ ||.|++ |+ ..+++||+++. +.++++++++.|+++++.+..
T Consensus 278 f~~~~~~~---------~~~l~~~l~~~-GI~vr~---~~--~~~~lRisi~~-~~~e~~~l~~al~~~~~~~~~ 336 (339)
T PRK06959 278 FSWTDDPR---------AAALHAALARR-GIWTRY---FA--PPPSVRFGLPA-DEAEWQRLEDALAECVPTLAA 336 (339)
T ss_pred EEEEeCCC---------HHHHHHHHHhC-CeEEEE---CC--CCCeEEEECCC-CHHHHHHHHHHHHHHHHHHhh
Confidence 99998753 46788888776 999985 32 24699999965 578899999999988876543
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=349.66 Aligned_cols=319 Identities=19% Similarity=0.288 Sum_probs=255.7
Q ss_pred CceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEec
Q 046900 48 SGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA 127 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~ 127 (442)
.++|+|+.|+|+++++.. + .. .....|++. +..+||+++|++++ +++++|++|+
T Consensus 31 ~~~~~l~~ne~~~~~~~~---~-~~-------------~~~~~Yp~~-~~~~Lr~aia~~~~--------~~~~~I~it~ 84 (354)
T PRK04635 31 RGDIWINANESPFNNEYK---L-DL-------------ARLNRYPEC-QPPELINAYSAYAG--------VAPEQILTSR 84 (354)
T ss_pred CCcEEeeCCCCCCCCChh---h-hh-------------HHhccCCCC-CHHHHHHHHHHHhC--------cCHHHEEEeC
Confidence 456899999999865421 0 00 124569876 57999999999864 7899999999
Q ss_pred ChHHHHHHHHHhhcCCC-CeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 128 GATAANELLTFILADPG-DALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 128 G~~~ai~~~~~~l~~~g-d~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
|+++++.+++.+++++| |.|+++.|+|+.|...++. .|++++.+|+++ +|.+|++.+++ + + ++|+|++
T Consensus 85 Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~~~~~-~g~~v~~v~~~~--~~~~~~~~l~~-~-~------~~~li~i 153 (354)
T PRK04635 85 GADEAIELLIRAFCEPGQDSIACFGPTYGMYAISAET-FNVGVKALPLTA--DYQLPLDYIEQ-L-D------GAKLVFI 153 (354)
T ss_pred CHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHH-cCCEEEEEecCC--CCCCCHHHHHh-c-c------CCCEEEE
Confidence 99999999999999999 8999999999999988884 999999999874 46788888863 2 2 7899999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
||||||||.+++.+++++|++.|+ +++||+||+|.++... .+..++... .+++++++||||.||++|+|
T Consensus 154 ~nP~NPTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~~----~s~~~~~~~-----~~~~iv~~S~SK~~~l~GlR 222 (354)
T PRK04635 154 CNPNNPTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCPE----YSVADLLAS-----YPNLVVLRTLSKAFALAGAR 222 (354)
T ss_pred eCCCCCCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhccC----cchHHHHhh-----CCCEEEEechHHHhhhhHHH
Confidence 999999999999999999999886 4999999999986532 244444333 47899999999999999999
Q ss_pred eEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCceEE
Q 046900 287 VGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAG-IECLKGNAGLF 365 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~ 365 (442)
+||+++ ++.+.+.+......+.++.+.|.++.+++.+.. .+++++.++.++++|+++.+.|++.+ +++.+++ |.|
T Consensus 223 lG~~i~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-g~f 298 (354)
T PRK04635 223 CGFTLA-NEELIEILMRVIAPYPVPLPVSEIATQALSEAG--LARMKFQVLDLNAQGARLQAALSMYGGAKVLEGN-GNY 298 (354)
T ss_pred HhhhhC-CHHHHHHHHhhcCCCCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCC-CcE
Confidence 999999 566677766666667788889988888887643 23466777889999999999999885 7777666 468
Q ss_pred EEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHH
Q 046900 366 CWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHN 432 (442)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~ 432 (442)
+|++++. +.++.+.|.+ +||.+++++.+ ..++++|||++. .+++++++++|++
T Consensus 299 ~~~~~~~---------~~~~~~~l~~-~gv~v~~~~~~--~~~~~lRis~~~--~e~~~~l~~al~~ 351 (354)
T PRK04635 299 VLAKFDD---------VDAVFKALWD-AGIVARAYKDP--RLANCIRFSFSN--RAETDKLIGLIRN 351 (354)
T ss_pred EEEECCC---------HHHHHHHHHH-CCEEEEECCCC--CCCCeEEEEeCC--HHHHHHHHHHHHH
Confidence 9998863 4466666654 59999876433 235799999985 7889999988865
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=347.10 Aligned_cols=310 Identities=18% Similarity=0.245 Sum_probs=242.5
Q ss_pred CCceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 47 PSGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
+.++|+|+.|+|+++++... ... .....|++. ..+||++||++++ +++|++|
T Consensus 19 ~~~~i~l~~ne~p~~~~~~~-~~~---------------~~~~~yp~~--~~~Lr~~ia~~~~----------~~~I~it 70 (330)
T PRK05664 19 LADWLDLSTGIAPWPWPVPA-IPA---------------DAWARLPET--DDGLEAAARAYYG----------APQLLPV 70 (330)
T ss_pred HHHheeecCCcCCCCCCCcc-cCH---------------HHHHhCCCC--hHHHHHHHHHHhC----------CCCEEEC
Confidence 34679999999987543110 000 012357653 3899999999974 5799999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+|++++|.+++. +.+||+|++++|+|+.|...++. .|++++.+|++ .+++.+. +++++++
T Consensus 71 ~Gs~~al~~~~~--~~~gd~v~v~~P~y~~~~~~~~~-~g~~~~~v~~~----------~~~~~~~-------~~~~v~l 130 (330)
T PRK05664 71 AGSQAAIQALPR--LRAPGRVGVLSPCYAEHAHAWRR-AGHQVRELDEA----------EVEAALD-------SLDVLVV 130 (330)
T ss_pred cCHHHHHHHHHH--ccCCCEEEEcCCChHHHHHHHHH-cCCeEEEechh----------hHhhhhc-------CCCEEEE
Confidence 999999998863 57999999999999999999995 99999998753 3444442 5678999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
+|||||||.+++.+++++|+++|++++++||+||+|.++. . ..++.++.. .+++++++||||.||+||+|
T Consensus 131 ~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~--~--~~s~~~~~~------~~~vi~~~SfSK~~gl~GlR 200 (330)
T PRK05664 131 VNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNT--P--QHSLAACAH------RPGLIVLRSFGKFFGLAGAR 200 (330)
T ss_pred eCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCC--C--ccccccccc------CCCEEEEeeccccccCCCcc
Confidence 9999999999999999999999999999999999998753 1 234444432 47899999999999999999
Q ss_pred eEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEE
Q 046900 287 VGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFC 366 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~ 366 (442)
+||+++ ++.+.+.+.+....+.++.++|.++..+|.+..+ .++.++.++++|+++.+.|++.|++.. +..++|+
T Consensus 201 iG~~v~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~-~~~~~f~ 274 (330)
T PRK05664 201 LGFVLA-EPALLRALAELLGPWTVSGPTRWLAQAALADTPW----QRRQRERLLAASQRLAALLRRHGLTPA-GGCALFQ 274 (330)
T ss_pred eEEEEe-CHHHHHHHHHhcCCCCCCHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHHHHHHHHCCCccc-CCcceEE
Confidence 999999 4667777776666677899999999999987543 466788999999999999998876432 1223789
Q ss_pred EEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 367 WMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
|++++. +.++++.|.++ ||.|.+ |+ .++++||+++. +.++++++++.|+++.++
T Consensus 275 ~~~~~~---------~~~~~~~l~~~-gi~v~~---f~--~~~~iRis~~~-~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 275 WVRTED---------AAALHEFLARR-GILTRL---FE--QPASLRFGLPA-DEADWARLDQALLAYRKE 328 (330)
T ss_pred EEecCC---------HHHHHHHHHHC-CeEEEE---CC--CCCeEEEECCC-CHHHHHHHHHHHHHHHhh
Confidence 988752 56777777665 999984 43 35799999996 567788888888776543
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=350.30 Aligned_cols=335 Identities=18% Similarity=0.284 Sum_probs=265.9
Q ss_pred CCCCCCCCceeeeecccccc-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 41 YEESTNPSGVIQMGLAENQV-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 41 ~~~~~~~~~~i~l~~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
|.++.++.++|+|+.+++++ +++.+.+.+.+... ....|++ .|..++|+++|++++ ++
T Consensus 15 ~~~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~------------~~~~y~~-~g~~~lr~~ia~~~~--------~~ 73 (352)
T PRK03321 15 YVPGKTVPGAIKLSSNETPFGPLPSVRAAIARAAA------------GVNRYPD-MGAVELRAALAEHLG--------VP 73 (352)
T ss_pred CCCCCCcccceeccCCCCCCCCCHHHHHHHHHHHH------------hcCcCCC-CcHHHHHHHHHHHhC--------cC
Confidence 55556666889999999987 44666666654421 2346864 699999999999985 67
Q ss_pred CCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCC
Q 046900 120 LNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDM 199 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~ 199 (442)
+++|++|+|+++++..++..++++||.|+++.|+|..|...++. .|++++.++++++ +.+|++.+++.+++
T Consensus 74 ~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~-~g~~~~~v~~~~~--~~~~~~~l~~~~~~------ 144 (352)
T PRK03321 74 PEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPILVQV-AGATPVQVPLTPD--HTHDLDAMAAAITD------ 144 (352)
T ss_pred HHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHH-cCCEEEEccCCCC--CCCCHHHHHHhhcc------
Confidence 88999999999999999999999999999999999988888874 8999999998743 56899999998864
Q ss_pred ceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCccc
Q 046900 200 RVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKD 279 (442)
Q Consensus 200 ~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~ 279 (442)
+++++++++|+||||.+++.+++.++++.| +++++||+||+|.++.+++....++..+.. .+++++++||||.
T Consensus 145 ~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~------~~~vi~~~S~SK~ 217 (352)
T PRK03321 145 RTRLIFVCNPNNPTGTVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRD------HPNVVVLRTFSKA 217 (352)
T ss_pred CCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhh------CCCEEEEecchHH
Confidence 788999999999999999999999888876 479999999999998886543333333322 4789999999999
Q ss_pred CCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 046900 280 LGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK 359 (442)
Q Consensus 280 ~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 359 (442)
||+||+|+||+++ ++.+.+.+.+....+.++.++|.++.+++...+ .+.+ ..+.+.++++.+.+.|++.|+.+.+
T Consensus 218 ~g~~GlRiG~~v~-~~~~~~~~~~~~~~~~~s~~~q~~a~~~l~~~~---~~~~-~~~~~~~~r~~~~~~L~~~~~~~~~ 292 (352)
T PRK03321 218 YGLAGLRVGYAVG-HPEVIAALRKVAVPFSVNSLAQAAAIASLAAED---ELLE-RVDAVVAERDRVRAALRAAGWTVPP 292 (352)
T ss_pred hhhHHHhhhhhcC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHH---HHHH-HHHHHHHHHHHHHHHHHHCCCccCC
Confidence 9999999999999 567777777666667789999998888887533 2333 3344456678899999988877644
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
.+|+|+|++++. +..++++.|.+ +||.+.+ |+ ..++||+++. .+++++++++|.+++.
T Consensus 293 -~~g~~i~i~l~~--------~~~~~~~~l~~-~gI~v~~---~~---~~~iRi~~~~--~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 293 -SQANFVWLPLGE--------RTADFAAAAAE-AGVVVRP---FA---GEGVRVTIGA--PEENDAFLRAARAWRA 350 (352)
T ss_pred -CCCCEEEEeCCC--------CHHHHHHHHHH-CCEEEEc---cC---CCcEEEeeCC--HHHHHHHHHHHHHHhc
Confidence 457899999853 25678888755 5999987 43 3469999975 7889999999998754
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=338.36 Aligned_cols=308 Identities=20% Similarity=0.315 Sum_probs=240.1
Q ss_pred CCCCCCCceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 42 EESTNPSGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 42 ~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
+.+.++.++|+|+.++|+++++.+.+.+.+... ....|+. ...||++++++++ +
T Consensus 2 ~~~~~~~~~i~l~~~~np~~p~~~~~a~~~~~~------------~~~~yp~---~~~l~~~ia~~~~-----------~ 55 (311)
T PRK08354 2 HGGIREEGLIDFSASVNPYPPEWLDEMFERAKE------------ISGRYTY---YEWLEEEFSKLFG-----------E 55 (311)
T ss_pred CCCCCccceeEecCCCCCCCCHHHHHHHHHHHH------------HhhcCCC---hHHHHHHHHHHHC-----------C
Confidence 445678899999999999977766666655421 1345764 3679999998863 4
Q ss_pred cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCce
Q 046900 122 RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (442)
+|++|+|+++++.+++..+ .+||.|++++|+|+.|...++. .|++++.++ +|++.+++.++ ++
T Consensus 56 ~I~vt~G~~~al~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~-~g~~~~~~~--------~d~~~l~~~~~-------~~ 118 (311)
T PRK08354 56 PIVITAGITEALYLIGILA-LRDRKVIIPRHTYGEYERVARF-FAARIIKGP--------NDPEKLEELVE-------RN 118 (311)
T ss_pred CEEECCCHHHHHHHHHHhh-CCCCeEEEeCCCcHHHHHHHHH-cCCEEeecC--------CCHHHHHHhhc-------CC
Confidence 7999999999999888655 4899999999999999999995 999997754 57888887764 45
Q ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC
Q 046900 202 RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG 281 (442)
Q Consensus 202 ~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g 281 (442)
++++++|||||||.+++.+++++|+++|++++++||+||+|.+|.+++.. . . ++++++++||||.||
T Consensus 119 ~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~-~------~------~~~vi~~~S~SK~~~ 185 (311)
T PRK08354 119 SVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPES-P------E------GENIIKLRTFTKSYG 185 (311)
T ss_pred CEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccc-c------C------CCcEEEEeccHhhcC
Confidence 68999999999999999999999999999999999999999998876421 1 1 378999999999999
Q ss_pred CCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC
Q 046900 282 LPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN 361 (442)
Q Consensus 282 ~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 361 (442)
+||+|+||+++ +.+.++.....+.++...|.++..++++ .+ +++++.++.++++++.+.+.+ ..+++
T Consensus 186 l~GlRiG~~v~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~l~~~l------~~~~~ 252 (311)
T PRK08354 186 LPGIRVGYVKG----FEEAFRSVRMPWSIGSTGYAFLEFLIED-DF--EHLRKTMPLIWREKERFEKAL------YVKSD 252 (311)
T ss_pred Cccceeeeeee----hHHHHHHcCCCccCCHHHHHHHHHHHHh-HH--HHHHHHHHHHHHHHHHHHHhc------CCCCC
Confidence 99999999998 3455666666677788888888888774 22 345566666777776665554 23567
Q ss_pred ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHH
Q 046900 362 AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 362 ~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~ 433 (442)
++|++ ++++. +.++++.|.++ ||.|.||+.|+ .++|+||+++. .++.+++++.|+++
T Consensus 253 ~~~~~-~~~~~---------~~~~~~~l~~~-gv~v~~g~~f~--~~~~iRi~~~~--~~~~~~l~~al~~~ 309 (311)
T PRK08354 253 ANFFI-KDVGD---------AEKFVEFLKRN-GILVRDCTSFG--LPGYIRFSVRD--REENEKLIRALREW 309 (311)
T ss_pred CcEEE-EECCC---------HHHHHHHHHHC-CeEEEecccCC--CCCeEEEEeCC--HHHHHHHHHHHHHh
Confidence 76555 66542 46788887665 99999999996 35899999986 55577777777664
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=343.75 Aligned_cols=326 Identities=17% Similarity=0.303 Sum_probs=255.5
Q ss_pred ceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEec
Q 046900 49 GVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA 127 (442)
Q Consensus 49 ~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~ 127 (442)
..++|+.++|+++. +.+.+.+.+.... .....|++. +..+||+++|+|++ +++++|++|+
T Consensus 23 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~----------~~~~~y~~~-~~~~lr~~ia~~~~--------~~~~~i~it~ 83 (351)
T PRK14807 23 YKYKMDANETPFELPEEVIKNIQEIVKS----------SQVNIYPDP-TAEKLREELARYCS--------VVPTNIFVGN 83 (351)
T ss_pred ceeEccCCCCCCCCCHHHHHHHHHHhhc----------CcccCCCCc-cHHHHHHHHHHHhC--------CCcccEEEec
Confidence 44799999998753 5555555443211 123568765 46999999999974 6789999999
Q ss_pred ChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEe
Q 046900 128 GATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLIT 207 (442)
Q Consensus 128 G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~ 207 (442)
|+++++..++.+++++||.|++++|+|+.+...++. .|++++.+++++ +|.+|++.+++.+++ .++|+++++
T Consensus 84 G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~--~~~~d~~~l~~~~~~-----~~~k~v~l~ 155 (351)
T PRK14807 84 GSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKI-AGAVEIPVKLKE--DYTYDVGSFIKVIEK-----YQPKLVFLC 155 (351)
T ss_pred CHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHH-cCCeEEEeecCC--CCCCCHHHHHHHhhc-----cCCCEEEEe
Confidence 999999999999999999999999999999888884 999999999874 467999999998863 278999999
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee
Q 046900 208 NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV 287 (442)
Q Consensus 208 ~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri 287 (442)
||+||||.+++.+++.++++ +++.++|+||+|.++. +....+ .... .+++|+++||||.||+||+|+
T Consensus 156 ~p~NPtG~~~~~~~l~~l~~---~~~~~~ivDe~y~~~~--~~~~~~---~~~~-----~~~vi~~~S~SK~~~~~GlRi 222 (351)
T PRK14807 156 NPNNPTGSVIEREDIIKIIE---KSRGIVVVDEAYFEFY--GNTIVD---VINE-----FENLIVLRTLSKAFGLAGLRV 222 (351)
T ss_pred CCCCCCCCCCCHHHHHHHHH---hCCCEEEEeCcchhhc--ccchHH---Hhhh-----CCCEEEEecchHhcccchhce
Confidence 99999999999888777765 5567899999998863 322222 2222 478999999999999999999
Q ss_pred EEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEE
Q 046900 288 GTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFC 366 (442)
Q Consensus 288 G~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~ 366 (442)
||+++ ++.+.+.+......+.++.++|.++.+++++. + +++..+.++++|+.+.+.|++. |+.+.+ .+|+|+
T Consensus 223 G~~v~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~----~~~~~~~~~~~r~~l~~~l~~~~g~~~~~-~~~~~~ 295 (351)
T PRK14807 223 GYAVA-NENILKYLNLVKSPYNINSLSQVIALKVLRTG-V----LKERVNYILNERERLIKELSKIPGIKVYP-SKTNFI 295 (351)
T ss_pred eeeec-CHHHHHHHHHccCCCCcCHHHHHHHHHHHhHH-H----HHHHHHHHHHHHHHHHHHHHhCCCcEECc-CCccEE
Confidence 99998 56777777776666778899999999999753 2 3445566788889999999875 777654 456699
Q ss_pred EEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 367 WMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
|++++. ..++++.|+++ ||.|.++..+. ..++++||+++. .++.+++++.|++++
T Consensus 296 ~i~~~~---------~~~~~~~l~~~-gV~v~~~~~~~-~~~~~iRis~~~--~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 296 LVKFKD---------ADYVYQGLLER-GILVRDFSKVE-GLEGALRITVSS--CEANDYLINGLKELL 350 (351)
T ss_pred EEEcCC---------HHHHHHHHHHC-CEEEEECCCCC-CCCCeEEEEcCC--HHHHHHHHHHHHHhh
Confidence 999864 45777777766 99999865432 245799999986 567888888887754
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=326.35 Aligned_cols=345 Identities=19% Similarity=0.244 Sum_probs=271.8
Q ss_pred cccccCCCcchHHHHHHHHHHHH-HHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhc
Q 046900 87 ENALFQDYHGLKSFRQAMASFME-QIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRT 165 (442)
Q Consensus 87 ~~~~Y~~~~g~~~lr~~ia~~l~-~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~ 165 (442)
...+|++..|.++|+.-+.++.. ..+. ......+|++|+|.+.+++.+++.++++||+|+++.++|+.....++ ..
T Consensus 92 ~alQYg~s~G~peLl~fik~h~~~~ih~--p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~-a~ 168 (472)
T KOG0634|consen 92 RALQYGQSSGIPELLLFIKDHNRPTIHA--PPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSME-AL 168 (472)
T ss_pred hhhccccccCcHHHHHHHHHhccccccC--CCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhcc-cc
Confidence 45789999999999999999665 2222 23455699999999999999999999999999999999999999998 49
Q ss_pred CcEEEEEecCCCCCCcCCHHHHHHHHHHHHhc---CCceeEEEEeCC--CCCCCcCCCHHHHHHHHHHHHhcCcEEEEec
Q 046900 166 GIKIVPIHCDSSNNFQITPQALEAAYKEAESK---DMRVRGVLITNP--SNPLGATIQRSVLEELLDFATRKNIHLVSDE 240 (442)
Q Consensus 166 G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~---~~~~~~v~l~~P--~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De 240 (442)
|+++++|+++++| +++|.|++.+.++... .+++ .|++|.| +||||..++.+++++|.++|++|+++||+||
T Consensus 169 gv~~ipv~md~~G---i~pE~l~~il~~w~~~~~k~~~p-~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDd 244 (472)
T KOG0634|consen 169 GVKIIPVKMDQDG---IDPESLEEILSNWKPGSYKKPKP-HVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDD 244 (472)
T ss_pred CceEEeccccCCC---CCHHHHHHHHhcCCcccccCCCC-eEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecC
Confidence 9999999998766 9999999999988643 2444 4677777 6999999999999999999999999999999
Q ss_pred cCCcCCCCC--------CCcccHHHHHh----h-hcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc-
Q 046900 241 IYSGSAFSS--------SEFVSIAEILE----A-RQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS- 306 (442)
Q Consensus 241 ~y~~~~~~~--------~~~~s~~~~~~----~-~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~- 306 (442)
.|..+.|+. .+..+...+.. . .+.+..++||.+.||||.++ ||+|+||+.+++..+...+.....
T Consensus 245 pYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~it~~~~~l~ril~~ae~~ 323 (472)
T KOG0634|consen 245 PYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWITGNSLFLKRILDLAEVA 323 (472)
T ss_pred ccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEEeecCHHHHHHHhhhccee
Confidence 999888862 12223112221 1 12244689999999999997 999999999965555555543222
Q ss_pred cCCCcHHHHHHHHHHhcCchh--HHHHHHHHHHHHHHHHHHHHHHHHhC---C-CeeecCCceEEEEEecCCc--ccccC
Q 046900 307 FTLISSQTQYLLASMLSNKKF--TENYIKTNRERLQKRYQMIIEGLRSA---G-IECLKGNAGLFCWMNLSPL--LEEQT 378 (442)
Q Consensus 307 ~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~---g-~~~~~~~~g~~~~~~~~~~--~~~~~ 378 (442)
..+.|..+|.++-++|..... ..+|+.+.+..|..||..+..+|.+. + .++.+|.+|||+|++++-. .....
T Consensus 324 t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~ 403 (472)
T KOG0634|consen 324 TSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKS 403 (472)
T ss_pred ecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccc
Confidence 234667788888888875321 14899999999999999999999886 4 7788999999999999811 11112
Q ss_pred hhhHHHHHHHHHHcCcEEEeCCCCCCCC-C----CCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 379 REGELALWDSMLHEVKLNISPGSSCHCS-E----PGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 379 ~~~~~~l~~~l~~~~gi~v~pg~~f~~~-~----~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
..+.+++....+.+.||.+.+|+.|... . +-++|++++..+.|+++++++|+..+++++-.
T Consensus 404 i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike~f~ 469 (472)
T KOG0634|consen 404 INQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKEHFI 469 (472)
T ss_pred hHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHHHhh
Confidence 2234455555556669999999999764 2 23899999977899999999999999998754
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=345.22 Aligned_cols=326 Identities=19% Similarity=0.315 Sum_probs=259.2
Q ss_pred CCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|+|++++|++++ +.+.+.+.+... ....|++..+ +++|+++|+|++ +++++|++
T Consensus 33 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~y~~~~~-~~lr~~ia~~~~--------~~~~~i~~ 91 (361)
T PRK00950 33 PESIIKLGSNENPLGPSPKAVEAIEKELS------------KIHRYPEPDA-PELREALSKYTG--------VPVENIIV 91 (361)
T ss_pred ccceEEccCCCCCCCCCHHHHHHHHHHHH------------hhcCCCCCCH-HHHHHHHHHHhC--------CCHHHEEE
Confidence 4588999999998753 444444443321 1346877644 999999999975 67899999
Q ss_pred -ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 126 -TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 126 -t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
|+|+++++..++.+++++||.|+++.|+|+.+...++. .|++++.++.+ ++|.+|++.+++.+.+ +++++
T Consensus 92 ~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~-~g~~~~~~~~~--~~~~~~~~~l~~~~~~------~~~~v 162 (361)
T PRK00950 92 GGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAKA-HGAKPVYAKRE--EDFSLDVDSVLNAITE------KTKVI 162 (361)
T ss_pred eCCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHH-cCCEEEEeecC--CCCCcCHHHHHHHhcc------CCCEE
Confidence 79999999999999999999999999999999888884 89999999854 3577999999988754 67899
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++++|+||||.+++.+++.+|+ +++++++|+||+|.++. +. +...+... .+++++++||||.||+||
T Consensus 163 ~~~~p~nptG~~~~~~~l~~l~---~~~~~~li~De~y~~~~--~~---~~~~~~~~-----~~~vi~~~S~SK~~g~~G 229 (361)
T PRK00950 163 FLCTPNNPTGNLIPEEDIRKIL---ESTDALVFVDEAYVEFA--EY---DYTPLALE-----YDNLIIGRTFSKVFGLAG 229 (361)
T ss_pred EEeCCCCCCCCCcCHHHHHHHH---HHCCcEEEEECchhhhC--cc---chHHHHHh-----cCCEEEEEeehHhhcCch
Confidence 9999999999999977666554 57799999999999865 22 22233332 468999999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceE
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGL 364 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~ 364 (442)
+|+||+++ ++.+.+.+++....+.++++.|.++..++.+.++ +++.++.++++|+.+.+.|. +.+. +.+++
T Consensus 230 lRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~----~~~~~~~~~~~r~~l~~~l~---~~~~-~~~~~ 300 (361)
T PRK00950 230 LRIGYGFV-PEWLIDYYMRAKTPFSLTRLSQAAAIAALSDKEY----IEKSIEHGIKSREYLYNELP---FKVY-PSEAN 300 (361)
T ss_pred hhcchhcC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHhhcC---eeEC-CCcce
Confidence 99999999 5666767776666667889999999988876543 56667788888888888875 4544 55678
Q ss_pred EEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 365 FCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
|+|++++.. ++.++++.|.++ ||.+.||..|+..+++++||+++. .++++++++.|++++
T Consensus 301 ~i~~~~~~~-------~~~~~~~~l~~~-gv~v~~~~~f~~~~~~~lRis~~~--~~~~~~l~~~L~~il 360 (361)
T PRK00950 301 FVLVDVTPM-------TAKEFCEELLKR-GVIVRDCTSFRGLGDYYIRVSIGT--FEENERFLEILKEIV 360 (361)
T ss_pred EEEEECCCC-------CHHHHHHHHHHC-CEEEeeCCccCCCCCCeEEEECCC--HHHHHHHHHHHHHHh
Confidence 999998431 367889998776 999999998865556899999985 678999999998875
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=338.49 Aligned_cols=317 Identities=16% Similarity=0.269 Sum_probs=247.3
Q ss_pred CCCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEE
Q 046900 46 NPSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 46 ~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 124 (442)
.+.++|+|+.++|++++ +.+.+.+.+.... .....|+++ |.++||+++|+|+++. .+++++|+
T Consensus 17 ~~~~~i~l~~~~~~~~~p~~~~~~~~~~~~~----------~~~~~Y~~~-~~~~Lr~aia~~~~~~-----~~~~~~i~ 80 (335)
T PRK14808 17 EKRDRTYLALNENPFPFPEDLVDEVFRRLNS----------DTLRIYYDS-PDEELIEKILSYLDTD-----FLSKNNVS 80 (335)
T ss_pred CCCceeEecCCCCCCCCCHHHHHHHHHHhhh----------hhhhcCCCC-ChHHHHHHHHHHhCCC-----CCCcceEE
Confidence 34688999999999864 4455554443211 123457765 8899999999999753 16799999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++.+++.++ |.|++++|+|+.|...++. .|++++.+|++++ +.++... +. +++++
T Consensus 81 it~Ga~~~i~~~~~~~----d~v~v~~P~y~~~~~~~~~-~g~~~~~v~~~~~--~~~~~~~----~~-------~~~~i 142 (335)
T PRK14808 81 VGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAKA-VGAKFLEVPLTKD--LRIPEVN----VG-------EGDVV 142 (335)
T ss_pred EcCCHHHHHHHHHHHh----CcEEECCCCHHHHHHHHHH-cCCeEEEecCCCc--CCCChhH----cc-------CCCEE
Confidence 9999999999999888 6799999999999999995 9999999998753 4444221 11 45799
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
+++|||||||.+++.+++++|+ +++++||+||+|.+|. +.. ....... .+++++++||||+||++|
T Consensus 143 ~i~nP~NPTG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~--~~~---~~~~~~~-----~~~vi~~~S~SK~~~l~G 208 (335)
T PRK14808 143 FIPNPNNPTGHVFEREEIERIL----KTGAFVALDEAYYEFH--GES---YVDLLKK-----YENLAVIRTFSKAFSLAA 208 (335)
T ss_pred EEeCCCCCCCCCcCHHHHHHHH----hcCCEEEEECchhhhc--CCc---hHHHHHh-----CCCEEEEEechhhccCcc
Confidence 9999999999999999888886 4799999999999964 222 2222232 478999999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceE
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGL 364 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~ 364 (442)
+|+||++++ +.+.+.+.+....+.++.++|.++..++.+.+ +..+.++.+.++|+.+.+.|++.|+++.+++|+
T Consensus 209 lRvG~~v~~-~~~~~~l~~~~~~~~~~~~~q~a~~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~g~- 282 (335)
T PRK14808 209 QRIGYVVSS-EKFIDAYNRVRLPFNVSYVSQMFAKVALDHRE----IFEERTKFIVEERERMKSALREMGYRITDSRGN- 282 (335)
T ss_pred cceEEEEeC-HHHHHHHHHhcCCCCCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCe-
Confidence 999999994 56777776666567788999999988887533 355666777888999999999989888877665
Q ss_pred EEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHH
Q 046900 365 FCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~ 433 (442)
|+|+.++.. +..++.+.|.++ ||.|+. | ..++||+++. .++++++++.|+++
T Consensus 283 f~~~~l~~~-------~~~~~~~~l~~~-Gi~V~~---~----~~~~Risi~~--~~~~~~~~~~l~~~ 334 (335)
T PRK14808 283 FVFIFMEKE-------EKERLLEHLRAK-NIAVRS---F----REGVRITIGK--REENDMILKELEVF 334 (335)
T ss_pred EEEEeCCCc-------cHHHHHHHHHHC-CeEEEE---C----CCCeEEecCC--HHHHHHHHHHHHhh
Confidence 889998742 245777777666 999995 3 2579999986 67899999888754
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=339.91 Aligned_cols=327 Identities=22% Similarity=0.364 Sum_probs=266.2
Q ss_pred CCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|||++++|+++. +.+.+.+.+.. .....|+++.+ +++|+++|++++ +++++|++
T Consensus 18 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~------------~~~~~y~~~~~-~~lr~~ia~~~~--------~~~~~i~~ 76 (346)
T TIGR01141 18 GKEVIKLNSNENPFGPPPKAKEALRAEA------------DKLHRYPDPDP-AELKQALADYYG--------VDPEQILL 76 (346)
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHhH------------HHhhcCCCCCH-HHHHHHHHHHhC--------cChHHEEE
Confidence 4689999999988743 44555544432 12356877766 899999999986 57899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++..++.+++++||+|++++|+|+.+...+.. .|++++.++++++ +.+|++.+++.+.+ ++++|+
T Consensus 77 ~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~~~~~~-~g~~~~~~~~~~~--~~~d~~~l~~~~~~------~~~~v~ 147 (346)
T TIGR01141 77 GNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAKI-HGAEVVKVPLDED--GQLDLEDILVAIDD------KPKLVF 147 (346)
T ss_pred cCCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHH-cCCeEEEeccCCC--CCCCHHHHHHhcCC------CCCEEE
Confidence 99999999999999999999999999999988877774 8999999998754 57899999987643 788999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.+++.++++++++.|+ +++++|+||+|+++.+.+ +....... .+++++++|+||.||++|+
T Consensus 148 l~~p~NptG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~----~~~~~~~~-----~~~~i~~~S~sK~~g~~G~ 217 (346)
T TIGR01141 148 LCSPNNPTGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEP----STLPLLAE-----YPNLIVLRTLSKAFGLAGL 217 (346)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCc----cHHHHHhh-----CCCEEEEehhhHhhhchhh
Confidence 9999999999999999999999887 799999999999765432 12222221 3578999999999998999
Q ss_pred eeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceE
Q 046900 286 RVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGL 364 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~ 364 (442)
|+||+++ ++.+.+.++.....+.+++++|.++..+++... ++++.++.++++++.+.+.|.++ |+++. +.+|+
T Consensus 218 r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~ 291 (346)
T TIGR01141 218 RIGYAIA-NAEIIDALNKVRAPFNLSRLAQAAAIAALRDDD----FIEKTVEEINAERERLYDGLKKLPGLEVY-PSDAN 291 (346)
T ss_pred hceeeec-CHHHHHHHHhccCCCCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHhcCCCEEC-CCcCC
Confidence 9999998 566777777766667788999999999988654 46778899999999999999887 88755 44677
Q ss_pred EEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHH
Q 046900 365 FCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIH 431 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~ 431 (442)
|+|++++. ++.++++.|.++ ||.+.||..|+.. ++++|+|++ ++++++++++.|+
T Consensus 292 ~~~~~~~~--------~~~~~~~~L~~~-gI~v~~g~~f~~~-~~~iRls~~--~~~~i~~~~~~l~ 346 (346)
T TIGR01141 292 FVLIRFPR--------DADALFEALLEK-GIIVRDLNSYPGL-PNCLRITVG--TREENDRFLAALR 346 (346)
T ss_pred EEEEecCC--------CHHHHHHHHHHC-CeEEEeCCCcCCC-CCeEEEecC--CHHHHHHHHHHhC
Confidence 99999874 256788888765 9999999988644 789999997 4788999888763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=337.06 Aligned_cols=313 Identities=21% Similarity=0.292 Sum_probs=255.2
Q ss_pred CCceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 47 PSGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.+++++|+.++|+++++... .. ......|+++.+ +++|+.++++++ +++++|++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~----~~------------~~~~~~y~~~~~-~~lr~~la~~~~--------~~~~~i~~t 70 (330)
T TIGR01140 16 PEDWLDFSTGINPLGPPVPP----IP------------ASAWARYPDPEY-DELRAAAAAYYG--------LPAASVLPV 70 (330)
T ss_pred hhheeEccccCCCCCCChhh----cc------------hHHHhhCCCccH-HHHHHHHHHHhC--------CChhhEEEC
Confidence 45679999999988765211 11 123567988776 999999999974 568999999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+|+++++..+..++ .+| .|++++|+|..+...++ ..|++++.++ |++.+++.++ +++++++
T Consensus 71 ~G~~~~i~~~~~~l-~~g-~vl~~~p~y~~~~~~~~-~~g~~~~~~~---------d~~~l~~~~~-------~~~~v~i 131 (330)
T TIGR01140 71 NGAQEAIYLLPRLL-APG-RVLVLAPTYSEYARAWR-AAGHEVVELP---------DLDRLPAALE-------ELDVLVL 131 (330)
T ss_pred CCHHHHHHHHHHHh-CCC-eEEEeCCCcHHHHHHHH-HcCCEEEEeC---------CHHHHHhhcc-------cCCEEEE
Confidence 99999999987664 677 69999999999999888 4999999887 6788888773 5678999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
++|+||||.+++.+++++|+++|+++|++||+||+|.++.+. .++..+.. ..+++++++||||.||++|+|
T Consensus 132 ~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~----~~~~~~~~-----~~~~~i~~~S~SK~~g~~G~R 202 (330)
T TIGR01140 132 CNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD----ASLAPQAA-----RFPGLVVLRSLTKFFGLAGLR 202 (330)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc----cchhhHhc-----cCCCEEEEEecchhhcCchhh
Confidence 999999999999999999999999999999999999987653 13333322 147899999999999999999
Q ss_pred eEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCceEE
Q 046900 287 VGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAG-IECLKGNAGLF 365 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~ 365 (442)
+||+++ ++.+.+.+......+.+++++|.++..++++.++ .++.++.++++++.+.+.|++.+ +++. +.+|+|
T Consensus 203 ~G~i~~-~~~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f 276 (330)
T TIGR01140 203 LGFVVA-HPALLARLREALGPWTVNGPARAAGRAALADTAW----QAATRARLAAERARLAALLARLGGLEVV-GGTALF 276 (330)
T ss_pred hhheeC-CHHHHHHHHhcCCCCCchHHHHHHHHHHHhchHH----HHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCeE
Confidence 999999 4567777777766677889999999999987654 45678899999999999999986 5554 557899
Q ss_pred EEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHH
Q 046900 366 CWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRI 430 (442)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l 430 (442)
+|++++. ..+++++|+++ ||.+.||..|+....+++||++++ +.++ ++++++|
T Consensus 277 ~~~~~~~---------~~~l~~~l~~~-gi~v~pg~~f~~~~~~~iRi~~~~-~~~~-~~~~~~l 329 (330)
T TIGR01140 277 LLVRTPD---------AAALHEALARR-GILIRDFDNFPGLDPRYLRFALPT-DEEN-DRLEEAL 329 (330)
T ss_pred EEEEcCC---------HHHHHHHHHHC-CEEEEECCCCCCCCCCEEEEEecC-HHHH-HHHHHhh
Confidence 9998764 45788998876 999999999964456799999987 4444 7777665
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=334.97 Aligned_cols=317 Identities=18% Similarity=0.285 Sum_probs=246.2
Q ss_pred CceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.++|+|+.++|+++. +.+.+.+.+.... .....|++ .|.++||+++|+|++ +++++|++|
T Consensus 18 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~Y~~-~g~~~lr~~ia~~~~--------~~~~~I~~t 78 (337)
T PRK03967 18 NYRIWLDKNENPFDLPEELKEEIFEELKR----------VPFNRYPH-ITSDPLREAIAEFYG--------LDAENIAVG 78 (337)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHhhc----------CccccCCC-CCHHHHHHHHHHHhC--------cCcceEEEc
Confidence 367999999998753 4444444433211 12457875 699999999999985 679999999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+|+++++..++..+ +||+|+++.|+|+.|...++. .|++++.+++++ +|.+|++.+++.+. +++++++
T Consensus 79 ~G~~~~l~~~~~~~--~gd~V~v~~P~y~~~~~~~~~-~g~~~~~v~~~~--~~~~d~~~l~~~~~-------~~~~v~~ 146 (337)
T PRK03967 79 NGSDELISYLVKLF--EGKHIVITPPTFGMYSFYAKL-NGIPVIDVPLKE--DFTIDGERIAEKAK-------NASAVFI 146 (337)
T ss_pred CCHHHHHHHHHHHh--CCCeEEEeCCChHHHHHHHHH-cCCeEEEeecCC--CCCcCHHHHHHhcc-------CCCEEEE
Confidence 99999999998877 799999999999998887774 999999999874 47799999987642 6788999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
+|||||||.+++.+++.+++ +++++||+||+|.++. +. +....... .+++|+++||||.||+||+|
T Consensus 147 ~~P~NPtG~~~~~~~l~~i~----~~~~~ii~De~y~~~~--~~---~~~~~~~~-----~~~vi~l~S~SK~~~l~GlR 212 (337)
T PRK03967 147 CSPNNPTGNLQPEEEILKVL----ETGKPVVLDEAYAEFS--GK---SLIGLIDE-----YPNLILLRTFSKAFGLAGIR 212 (337)
T ss_pred eCCCCCCCCCCCHHHHHHHH----hcCCEEEEECchhhhc--cc---chHHHHhh-----CCCEEEEecchHhhcchhhh
Confidence 99999999999987766654 3699999999999865 22 22222222 36899999999999999999
Q ss_pred eEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEE
Q 046900 287 VGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFC 366 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~ 366 (442)
+||+++ ++.+.+.+.+....+.++.++|.++..++++.++ ..+.++.+.++|+.+.+.|.+. ..+.+++|+
T Consensus 213 iG~iv~-~~~~i~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~----~~~~~~~~~ 283 (337)
T PRK03967 213 AGYAIA-NEEIIDALYRIKPPFSLNILTMKIVRLALDHYDL----IEERIDYIIKERERVRRELGEY----AYPSDANFL 283 (337)
T ss_pred heeeec-CHHHHHHHHhhcCCCCCCHHHHHHHHHHHhCHHH----HHHHHHHHHHHHHHHHHHhccC----cCCCCCcEE
Confidence 999999 5667777777666777899999999999986543 3444555667788888888754 246788899
Q ss_pred EEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 367 WMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
|++++ +++.|+++ ||.|+++.. ...+++||+++. .++.+++++.|+++.+.+
T Consensus 284 ~~~~~-------------~~~~l~~~-gi~v~~~~~---~~~~~~Ri~~~~--~~~~~~l~~~l~~~~~~~ 335 (337)
T PRK03967 284 LLKLD-------------AYDYLLEN-GIVVRKLSG---RLEGHIRVTVGK--REENDEFIKALKEIKEGY 335 (337)
T ss_pred EEhHH-------------HHHHHHHC-CEEEEeCCC---CCCCeEEEecCC--HHHHHHHHHHHHHHHHhc
Confidence 98752 45677666 999998653 235799999986 567888888888876654
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=291.49 Aligned_cols=343 Identities=22% Similarity=0.351 Sum_probs=273.3
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC-CCCeEEEcCCCCcChHHhHhhhc
Q 046900 87 ENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD-PGDALLVPTPYYPGFDRDLRWRT 165 (442)
Q Consensus 87 ~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~-~gd~Vl~~~p~y~~~~~~~~~~~ 165 (442)
....|.+.+|.+-+|+.+|+|+.++.| ++++|++|++|.|++.++..++..|+. +.+.|++|.|.|+.|...+.. +
T Consensus 105 s~GaYS~SqGv~~vR~~VA~~I~rRDG--~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti~l-~ 181 (475)
T KOG0258|consen 105 SLGAYSDSQGVPGVRKHVAEFIERRDG--IPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATISL-L 181 (475)
T ss_pred cccccccccCChhHHHHHHHHHHhccC--CCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHHHH-h
Confidence 356799999999999999999999987 779999999999999999999988854 678999999999999999996 8
Q ss_pred CcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcC
Q 046900 166 GIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGS 245 (442)
Q Consensus 166 G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~ 245 (442)
|...+++.++++.+|.+|.++|++.+.++. ++.+++++++.||.||||.+++++.+++|+.+|.+++++++.||+|.+.
T Consensus 182 ~~~~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~N 260 (475)
T KOG0258|consen 182 GGTQVPYYLDEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDN 260 (475)
T ss_pred CCcccceeeccccCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhh
Confidence 999999999999999999999999999987 7789999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CcccHHHHHhhhcCCCCC--cEEEEecCccc-CCCCCceeEEEee--cCHHHHHHHHHccccCCCc-HHHHHHH
Q 046900 246 AFSSS-EFVSIAEILEARQYKDSE--RVHIVYSLSKD-LGLPGFRVGTIYS--YNDKVVTTARRMSSFTLIS-SQTQYLL 318 (442)
Q Consensus 246 ~~~~~-~~~s~~~~~~~~~~~~~~--~vi~~~S~SK~-~g~~G~RiG~i~~--~~~~~~~~~~~~~~~~~~s-~~~q~~~ 318 (442)
+|... .|+|+.....+++....+ .++.++|.||. +|-.|.|-||+-. ..+.+...+.+..+...++ ...|...
T Consensus 261 vy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~v 340 (475)
T KOG0258|consen 261 VYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLV 340 (475)
T ss_pred ccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhh
Confidence 99754 899999988876532223 44557899999 5788999999743 3455555555444432233 3455555
Q ss_pred HHHhcCc-----hh--HHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEEEEecCCccc------ccChhhHHH
Q 046900 319 ASMLSNK-----KF--TENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSPLLE------EQTREGELA 384 (442)
Q Consensus 319 ~~~l~~~-----~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~ 384 (442)
..+...+ .+ ..+..+.....++++.+.+.+.++.. |+.|.+++|.||++..+.-..+ ......+.-
T Consensus 341 dl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~F 420 (475)
T KOG0258|consen 341 DLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEF 420 (475)
T ss_pred ceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHHHHHHHHHhCCCCcHH
Confidence 4444421 11 12224456788899999999999987 9999999999999876542211 111223566
Q ss_pred HHHHHHHcCcEEEeCCCCCCCCC-CCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 385 LWDSMLHEVKLNISPGSSCHCSE-PGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 385 l~~~l~~~~gi~v~pg~~f~~~~-~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.|.+||+.+||+++||+.|+... ..++|.++-. .. + +.+++++++-.+.
T Consensus 421 Yc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp--~~-~-~~i~~~~~fH~~f 470 (475)
T KOG0258|consen 421 YCLKLLEATGICVVPGSGFGQKEGTYHFRTTILP--PG-L-EIIEKFKKFHAEF 470 (475)
T ss_pred HHHHHHHhcCeEEecCCCCCCCCceeEEEEeecC--ch-h-HHHHHHHHHHHHH
Confidence 78899999999999999999643 3469998864 33 4 7788888776554
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=266.38 Aligned_cols=372 Identities=19% Similarity=0.289 Sum_probs=271.6
Q ss_pred hhhhhhcCCCCCCCCCCceeeeecccccccHHHHHHHHH----hCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHH
Q 046900 32 GWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLE----QQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASF 107 (442)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~ 107 (442)
+...+..+..+.-+. ++.|.|+-+. +.-.+.+.++.. +..... +..+..++|..++|...|.++++..
T Consensus 15 Gi~~lMdDl~d~Lrt-~g~imLggGN-Pa~iPem~~~f~~~~aemla~~------~~~e~~cnY~~pQG~~~li~ala~~ 86 (417)
T COG3977 15 GITQLMDDLNDGLRT-PGAIMLGGGN-PARIPEMDDYFQDLLAEMLASG------KATEALCNYDGPQGKAVLIDALAKM 86 (417)
T ss_pred hHHHHHHHHHhhccC-CCceeeCCCC-cccChhHHHHHHHHHHHHHhcc------hHHHHHhcCCCCcchhHHHHHHHHH
Confidence 444555554333333 3578888774 433333333322 222110 1123467899999999999999999
Q ss_pred HHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC---CC--CeEEEc-CCCCcChHHhHhhhcCcEEEEE----ecCCC
Q 046900 108 MEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD---PG--DALLVP-TPYYPGFDRDLRWRTGIKIVPI----HCDSS 177 (442)
Q Consensus 108 l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~---~g--d~Vl~~-~p~y~~~~~~~~~~~G~~v~~v----~~~~~ 177 (442)
+++.+| +.+++.||.+|+|++.+.+.++..|.. .| ..|++| .|.|.+|..+... -.+ .|.+ .+.++
T Consensus 87 l~~~yg--wnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~-~d~-fVs~kP~iel~~~ 162 (417)
T COG3977 87 LRREYG--WNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLE-EDL-FVSAKPNIELLPA 162 (417)
T ss_pred HHHHhC--CCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccC-ccc-eeeccCCcccccc
Confidence 999988 557899999999999999999988843 34 356665 8999998876432 221 1211 12233
Q ss_pred C--CCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccH
Q 046900 178 N--NFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSI 255 (442)
Q Consensus 178 ~--~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~ 255 (442)
+ .|.+|.++|.-. .++.+|+++-|.||||.+++.+++.+|..+|++||+++|+|.+|+.- |.+-.+..+
T Consensus 163 g~FKY~vDF~~l~i~--------e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~P-FP~iifsd~ 233 (417)
T COG3977 163 GQFKYHVDFEHLHIG--------ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVP-FPGIIFSDA 233 (417)
T ss_pred cceeeccCHHHcccc--------cccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCC-CCceecccc
Confidence 3 467788777642 37888999999999999999999999999999999999999999841 111111111
Q ss_pred HHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHH
Q 046900 256 AEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIK 333 (442)
Q Consensus 256 ~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~ 333 (442)
.-+ -.+|++.+.|+|| .|+||.|+|.+++ ++.+++++.++... ...+...++.++.++++++..+---.
T Consensus 234 ~~~-------w~~NiilC~SLSK-~GLPG~R~GIiIa-ne~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseq 304 (417)
T COG3977 234 TPL-------WNENIILCMSLSK-LGLPGSRCGIIIA-NEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQ 304 (417)
T ss_pred ccc-------CCCCEEEEeehhh-cCCCCcceeEEEc-cHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHH
Confidence 111 1479999999999 5899999999999 88899888877665 34456788999999999886432222
Q ss_pred HHHHHHHHHHHHHHHHHHhC----CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCC-
Q 046900 334 TNRERLQKRYQMIIEGLRSA----GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEP- 408 (442)
Q Consensus 334 ~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~- 408 (442)
-.+-.|+++.+...+.|++. -+.+++|+|..|+|+-+.+.+- +.++++++|.++ ||++.||+.|++.-+
T Consensus 305 VIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~dLPI-----tt~~LYq~LKa~-Gvl~VPG~~FFpGl~~ 378 (417)
T COG3977 305 VIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDLPI-----TTEELYQRLKAR-GVLMVPGHYFFPGLDK 378 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCccceeeecCCcceeehhhhccCCC-----CHHHHHHHHHhC-eEEEecccccCCCCCC
Confidence 34667777777777777664 5667899999999998877644 478999999776 999999999986422
Q ss_pred ------CEEEEEeecCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 409 ------GWFRVCFANMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 409 ------~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
.++|+++.. +++.++.++++|.+.+++.-++
T Consensus 379 ewpH~hqC~Rmn~~~-~~~~ie~Gva~lae~ve~~yq~ 415 (417)
T COG3977 379 EWPHTHQCMRMNYVP-EPEKIEKGVAILAEEVERAYQE 415 (417)
T ss_pred CCCCccceEEEecCC-CHHHHHHHHHHHHHHHHHHHhc
Confidence 479999987 7889999999999999886554
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=283.10 Aligned_cols=318 Identities=30% Similarity=0.519 Sum_probs=255.0
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCc
Q 046900 88 NALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGI 167 (442)
Q Consensus 88 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~ 167 (442)
...|++..|..++++.++++++..++ ....++++++++|+++++..++.++.++||+|+++.|+|..+...++. .|.
T Consensus 29 ~~~~~~~~~~~~l~~~l~~~l~~~~~--~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~-~~~ 105 (350)
T cd00609 29 LLGYYPDPGLPELREAIAEWLGRRGG--VDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARL-AGA 105 (350)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHH-CCC
Confidence 35677888999999999999998765 245678999999999999999999999999999999999999999985 999
Q ss_pred EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCC
Q 046900 168 KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAF 247 (442)
Q Consensus 168 ~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~ 247 (442)
+++.++.++.+.+..+.+.++.... .+++++++++|+||||.+++.+++++|+++|+++|+++|+|++|+.+.+
T Consensus 106 ~~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~ 179 (350)
T cd00609 106 EVVPVPLDEEGGFLLDLELLEAAKT------PKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVY 179 (350)
T ss_pred EEEEEecccccCCccCHHHHHhhcC------ccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhcee
Confidence 9999999876544433244444332 3789999999999999999999999999999999999999999998776
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCc
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNK 325 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~ 325 (442)
.+......... ...+.+++++|+||.++++|+|+||++++++.+.+.++..... +..+...|.++..++...
T Consensus 180 ~~~~~~~~~~~------~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (350)
T cd00609 180 DGEPPPALALL------DAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDG 253 (350)
T ss_pred CCcccccccCc------CccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCc
Confidence 55432111111 1246789999999999889999999999554677776654444 567788888888888865
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCee-ecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCC
Q 046900 326 KFTENYIKTNRERLQKRYQMIIEGLRSAGIEC-LKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCH 404 (442)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~ 404 (442)
. ++.++.++.+.++++++.+.|++.+... ..+.+|+++|++++... ..+.+.++++++||.+.++..|.
T Consensus 254 ~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~l~~~gi~i~~~~~~~ 323 (350)
T cd00609 254 E---EHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGD-------DEEFLERLLLEAGVVVRPGSAFG 323 (350)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCCC-------hHHHHHHHHHhCCEEEecccccc
Confidence 3 4577888999999999999999875543 56788899999987631 23445555667799999998886
Q ss_pred CCCCCEEEEEeecCCHHHHHHHHHHHH
Q 046900 405 CSEPGWFRVCFANMSEQTLEVALKRIH 431 (442)
Q Consensus 405 ~~~~~~iRls~~~~~~e~i~~~l~~l~ 431 (442)
...+.++|++++.. ++++++++++|+
T Consensus 324 ~~~~~~iRi~~~~~-~~~i~~~~~al~ 349 (350)
T cd00609 324 EGGEGFVRLSFATP-EEELEEALERLA 349 (350)
T ss_pred cCCCCeEEEEeeCC-HHHHHHHHHHhh
Confidence 54567999999984 899999999886
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=255.01 Aligned_cols=306 Identities=19% Similarity=0.295 Sum_probs=243.1
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCC-CeEEEcCCCCcChHHhHhhhcCcE
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPG-DALLVPTPYYPGFDRDLRWRTGIK 168 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~g-d~Vl~~~p~y~~~~~~~~~~~G~~ 168 (442)
.|++++. ..++.++++- -++++|+|+++.|+.+.|++++++.+.|| ++|+.-.|+|..|.-.+.. .+++
T Consensus 65 ~~~d~rn-k~ls~a~~~d--------kpLt~dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~i-Nd~e 134 (375)
T KOG0633|consen 65 VYPDPRN-KRLSDALAQD--------KPLTSDNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAI-NDAE 134 (375)
T ss_pred ccCCccc-chhhhhcccC--------CCCCccceEEecCcHHHHHHHHhheecCCccceeecCCcceeEEEEeec-CCce
Confidence 3555543 5566665542 34789999999999999999999999999 8999999999999888875 8999
Q ss_pred EEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCC
Q 046900 169 IVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS 248 (442)
Q Consensus 169 v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~ 248 (442)
|+.+|+.. +|+++.|++.+.++. +..+|.+++++|+||||..++.+++.+|++.-. |.+||+||+|.+|.
T Consensus 135 Vvkvpl~p--dF~lnvdai~evl~~----ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYidFs-- 204 (375)
T KOG0633|consen 135 VVKVPLNP--DFSLNVDAIAEVLEL----DSKIKCIFLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYIDFS-- 204 (375)
T ss_pred EEEecCCC--CccccHHHHHHHHhc----cccceEEEEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEeec--
Confidence 99999987 789999999999875 347899999999999999999999999998554 78999999999954
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhH
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFT 328 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~ 328 (442)
+. .|-..+..+ ++|++++.+|||.||++|+|+||... +..+.+.+.+...++.+|.+...++.+++++..
T Consensus 205 g~--~S~~~lV~k-----YpNLivlqTlSKsfGLAGiRvG~~~~-~~~ia~iln~~KaPYNiS~~~s~~AL~Als~~n-- 274 (375)
T KOG0633|consen 205 GV--ESRMKLVKK-----YPNLIVLQTLSKSFGLAGIRVGYGAF-PLSIAEILNRAKAPYNISVAGSVAALAALSDSN-- 274 (375)
T ss_pred cc--cccchHhHh-----CCceeehhhhhhhcCcceeEeecccc-cHHHHHHHHhccCCccccchhHHHHHHhcCccc--
Confidence 41 244455654 79999999999999999999999998 677889999999998899988888888888543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCe-eecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeC-CCCCCC
Q 046900 329 ENYIKTNRERLQKRYQMIIEGLRSA-GIE-CLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISP-GSSCHC 405 (442)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~p-g~~f~~ 405 (442)
.+.++..++.+.+.|.++...|.+. ++. +..+.-..|+.+++.+... .-+..++.+++.+.||.|+- |+.-
T Consensus 275 ~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~~n----~~akkly~q~at~~gVvVRfrgse~-- 348 (375)
T KOG0633|consen 275 GKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDANFILIEVTGGDN----GMAKKLYKQDATKMGVVVRFRGSEE-- 348 (375)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcccccEEEEEEcCCCc----HHHHHHHHHHHHhcceEEEEcCCcc--
Confidence 3457788899999999999999876 332 2223333488888875422 12566777777777999983 2211
Q ss_pred CCCCEEEEEeecCCHHHHHHHHHHHHHH
Q 046900 406 SEPGWFRVCFANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 406 ~~~~~iRls~~~~~~e~i~~~l~~l~~~ 433 (442)
...|++||+.++ +|+..-+++.++++
T Consensus 349 ~c~G~lRitvGt--~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 349 GCKGYLRITVGT--PEENTVLMKCLKQF 374 (375)
T ss_pred ccceeEEEEcCC--cccchHHHHHHHhh
Confidence 235899999996 55677778877765
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=286.86 Aligned_cols=318 Identities=16% Similarity=0.216 Sum_probs=239.7
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcE
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIK 168 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~ 168 (442)
..|++..|.++||++++++++ .++|++|+|+++++.+++.++++||| |++++|.|+.+...+.. .|++
T Consensus 72 ~~Y~~~~g~~~Lreaia~~~~----------~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~-~G~~ 139 (460)
T PRK13238 72 EAYAGSRSYYRLEDAVKDIFG----------YPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIEL-NGAT 139 (460)
T ss_pred cccCCCCCHHHHHHHHHHHhC----------CCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHHH-cCCE
Confidence 579999999999999999986 35799999999999999999999999 99999999999988885 9999
Q ss_pred EEEEecCCC------CCCc--CCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCC-cCCCHHHHHHHHHHHHhcCcEEEEe
Q 046900 169 IVPIHCDSS------NNFQ--ITPQALEAAYKEAESKDMRVRGVLITNPSNPLG-ATIQRSVLEELLDFATRKNIHLVSD 239 (442)
Q Consensus 169 v~~v~~~~~------~~~~--~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG-~~~~~~~l~~l~~~~~~~~~~vi~D 239 (442)
++.+++++. ++|. +|++.|++.+++.. ..++++|++++|+|||| .+++.+++++|.++|++||++||+|
T Consensus 140 ~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~--~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~D 217 (460)
T PRK13238 140 AVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVG--AENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVID 217 (460)
T ss_pred EEEEeccccccccccccccCCcCHHHHHHHHhhcC--CCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 999998642 3565 99999999997521 13689999999999997 9999999999999999999999999
Q ss_pred ccCC--cCCCC-----CCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee------EEEeecCHHHHHHHHHcc-
Q 046900 240 EIYS--GSAFS-----SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV------GTIYSYNDKVVTTARRMS- 305 (442)
Q Consensus 240 e~y~--~~~~~-----~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri------G~i~~~~~~~~~~~~~~~- 305 (442)
+++. ...|. +....++.++.. .+.|++|.+.++|+|+ |+++++++.+.+.++...
T Consensus 218 aa~~~e~a~f~~~~e~g~~~~si~~i~~-----------~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~ 286 (460)
T PRK13238 218 AARFAENAYFIKQREPGYKDKSIKEIAR-----------EMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCI 286 (460)
T ss_pred CcchhhhhhhhhhccccccCCCHHHHhh-----------hhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhccc
Confidence 9763 23332 123445554432 2355556555555554 466665566776666542
Q ss_pred ------ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccC-
Q 046900 306 ------SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQT- 378 (442)
Q Consensus 306 ------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~- 378 (442)
+++..+...|.+++..+.... .+.++..+ .+++++|.+.|.+.|+++..|.||+|+++++........
T Consensus 287 ~~~g~~t~~g~~~~~~~Ala~~l~e~~-~~~~~~~~----~~~~~~l~~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~~ 361 (460)
T PRK13238 287 LYEGFPTYGGLAGRDMEALAVGLYEGM-DEDYLAYR----IGQVEYLGEGLEEAGVPIQTPAGGHAVFVDAGKFLPHIPA 361 (460)
T ss_pred ccCCcccccCcHHHHHHHHHhhHHHhh-ChHHHHHH----HHHHHHHHHHHHHCCCCeEccCCceEEEEEchhcCCCCCC
Confidence 223345556777776665311 02233333 335799999999999999999999999999976432110
Q ss_pred -hhhHHHHHHHHHHcCcEEEeCCCCCCCCC-----------CCEEEEEeec--CCHHHHHHHHHHHHHHHHH
Q 046900 379 -REGELALWDSMLHEVKLNISPGSSCHCSE-----------PGWFRVCFAN--MSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 379 -~~~~~~l~~~l~~~~gi~v~pg~~f~~~~-----------~~~iRls~~~--~~~e~i~~~l~~l~~~l~~ 436 (442)
...+.+++.+|++++||.+.|++.|..+. ..++||++.. .+.++++.+.++|+++.++
T Consensus 362 ~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~ 433 (460)
T PRK13238 362 EQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN 433 (460)
T ss_pred CCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 01257899999999999999999886432 3689999972 3789999999999987643
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=261.66 Aligned_cols=287 Identities=12% Similarity=0.117 Sum_probs=210.6
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEc---CCCCcChHHhHhhhcCcEEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVP---TPYYPGFDRDLRWRTGIKIVPI 172 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~---~p~y~~~~~~~~~~~G~~v~~v 172 (442)
|..++.+++.+.+.+++| ++++++++++|+++++..++.+|+++||.|+++ .|+|+.|...++. .|++++.+
T Consensus 51 g~~~~~~~Le~~lA~~~g----~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~~~~~l-~ga~~~~~ 125 (346)
T TIGR03576 51 GPAIFEEKVQELGREHLG----GPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIPRSCKL-AGAEYFES 125 (346)
T ss_pred CCHHHHHHHHHHHHHHcC----CCcceEEEECCHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHH-cCCEEecc
Confidence 444555555555544444 578999999999999999999999999999975 5799999888885 89886432
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
.|++.++. . .++++|++ +++||+|.+++.+++++|+++|++++++||+||+|+.++.+....
T Consensus 126 ---------~~l~~l~~-~-------~~~~lIii-tg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~ 187 (346)
T TIGR03576 126 ---------DELSELKK-I-------DGTSLVVI-TGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQ 187 (346)
T ss_pred ---------CCHHHHhh-C-------cCceEEEE-ECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCC
Confidence 13444322 1 25677766 467999999999999999999999999999999999865321111
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccC--CCcHHHHHHHHHHhcCchhHHH
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT--LISSQTQYLLASMLSNKKFTEN 330 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~ 330 (442)
.+.... +..++++|||| +++|+|+||+++ ++.+.+.+.+...++ .++++.|.++.+.|+...
T Consensus 188 ~~~~~~---------~~divv~s~SK--alaG~r~G~v~~-~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~---- 251 (346)
T TIGR03576 188 PPALDL---------GADLVVTSTDK--LMDGPRGGLLAG-RKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFE---- 251 (346)
T ss_pred CCHHHc---------CCcEEEeccch--hccccceEEEEe-CHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhcc----
Confidence 122221 12266789999 468999999999 566777777655442 357888888888886532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCE
Q 046900 331 YIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGW 410 (442)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~ 410 (442)
.+..++.++++++++.+.+.+ +.+.++++| |+|++++.. ++.+++..+++++||.++||+.|. ..++|
T Consensus 252 -~~~~~~~l~~r~~~~~~~l~~--~~~~~~~~~-f~~~~~~~~-------~~~~~~~~ll~~~gV~v~~~~~f~-~~~~~ 319 (346)
T TIGR03576 252 -LSRIRDAFKRKEEVYLRLFDK--LNVERTPTG-FVIKGVEEE-------KLIEIGLDLLRNYGIITITAVGMP-GASKT 319 (346)
T ss_pred -HHHHHHHHHHHHHHHHHHHHh--CCCCcCCCe-EEEEeCCCC-------CHHHHHHHHHHhCCEEEeCCcccC-CCCCe
Confidence 245677888888888888874 455555666 899998742 134667788888899999999884 34689
Q ss_pred EEEEeecCCHH---HHHHHHHHHHHHH
Q 046900 411 FRVCFANMSEQ---TLEVALKRIHNFM 434 (442)
Q Consensus 411 iRls~~~~~~e---~i~~~l~~l~~~l 434 (442)
+|||++. +++ +++.+++.|++-+
T Consensus 320 vRis~~~-~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 320 LRFDLAA-KDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred EEEEEec-ChHHhcCHHHHHHHHHhcc
Confidence 9999997 554 6888888887643
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=257.65 Aligned_cols=324 Identities=17% Similarity=0.199 Sum_probs=223.4
Q ss_pred eeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecCh
Q 046900 50 VIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGA 129 (442)
Q Consensus 50 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~ 129 (442)
+|||++++|+.|.+.+.+.+.+... ....|++..+..+|++++|++++ .+.+++++|+
T Consensus 1 ~~~~~~~~~~~p~~~~~~a~~~~~~------------~~~~Y~~~~~~~~L~~~la~~~g----------~~~~~v~~~g 58 (333)
T PRK10534 1 MIDLRSDTVTRPSRAMLEAMMAAPV------------GDDVYGDDPTVNALQDYAAELSG----------KEAALFLPTG 58 (333)
T ss_pred CcccccccCCCCCHHHHHHHHhccC------------CCcccCCCHHHHHHHHHHHHHhC----------CCeEEEeCch
Confidence 4799999999987877777765432 23468555578999999999975 2344688888
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCCcC-hHHh-HhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEe
Q 046900 130 TAANELLTFILADPGDALLVPTPYYPG-FDRD-LRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLIT 207 (442)
Q Consensus 130 ~~ai~~~~~~l~~~gd~Vl~~~p~y~~-~~~~-~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~ 207 (442)
++++.+++.+++.+||.|+++.|+|.. |... +....+++++.++.++ +|.+|+++|++++.+...+..++++|++|
T Consensus 59 ~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~lv~l~ 136 (333)
T PRK10534 59 TQANLVALLSHCERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAA--DGTLPLDKVAAKIKPDDIHFARTRLLSLE 136 (333)
T ss_pred HHHHHHHHHHhcCCCCeeEEechhhhhHhcCCchHHhcCceEEeecCCC--CCCCCHHHHHHhhcccCcCcccceEEEEe
Confidence 888888888889999999999888853 3321 2321337778887753 57899999999885311111257899999
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee
Q 046900 208 NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV 287 (442)
Q Consensus 208 ~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri 287 (442)
||+ ||.+++.+++++|+++|++++++||+||+|...... ....+...+... .++++ .||||.||++ +
T Consensus 137 np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~-~~~~~~~~~~~~-----~~~~~--~s~SK~~~~~---~ 203 (333)
T PRK10534 137 NTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVV-AYGCELKEITQY-----CDSFT--ICLSKGLGTP---V 203 (333)
T ss_pred cCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHH-HcCCCHHHHHhc-----CCEEE--EEeEcCCCCc---c
Confidence 766 599999999999999999999999999998721100 001123333221 13333 4899998854 6
Q ss_pred E-EEeecCHHHHHHHHHccccCC----CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc
Q 046900 288 G-TIYSYNDKVVTTARRMSSFTL----ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA 362 (442)
Q Consensus 288 G-~i~~~~~~~~~~~~~~~~~~~----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 362 (442)
| |+++ ++.+.+.+++....+. .+.+.|.++...+++ .. +..+...++|+++.+.|++.|+++.+|+
T Consensus 204 G~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~------~~-~~~~~~~~~r~~l~~~L~~~g~~~~~~~- 274 (333)
T PRK10534 204 GSLLVG-NRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKH------NV-ARLQEDHDNAAWLAEQLREAGADVMRQD- 274 (333)
T ss_pred cceEEc-CHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh------hH-HHHHHHHHHHHHHHHHHHhCCCccCCCC-
Confidence 8 5777 6677777766554322 223455555554432 11 2222344567899999999999888775
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~ 435 (442)
++|+|++++.. +..++.+.|.++ ||.++||. ++|++.. .++++++++++++|++++.
T Consensus 275 ~nfv~~~~~~~-------~~~~~~~~l~~~-gi~v~~~~--------~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 275 TNMLFVRVGEE-------QAAALGEYMRER-NVLINASP--------IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred ceEEEEECCch-------hHHHHHHHHHHc-CeeecCCc--------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 67999998741 245666666555 99999863 4788764 3489999999999998764
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=256.50 Aligned_cols=346 Identities=17% Similarity=0.111 Sum_probs=234.7
Q ss_pred CCCceeeeeccc-ccc-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcE
Q 046900 46 NPSGVIQMGLAE-NQV-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRI 123 (442)
Q Consensus 46 ~~~~~i~l~~~~-n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i 123 (442)
...++|||+.+. ..+ +++.+.+.+.+..... + .....|....|..++++++++++.+.++ . +++|
T Consensus 40 ~g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~----~----~~~~~~~~~~G~~~l~~~l~~~la~~~g----~-~~~i 106 (397)
T PRK06939 40 DGKEVINFCANNYLGLANHPELIAAAKAALDSH----G----FGMASVRFICGTQDLHKELEEKLAKFLG----T-EDAI 106 (397)
T ss_pred CCCeEEEeeccCccccCCCHHHHHHHHHHHHHc----C----CCCcccccccCCcHHHHHHHHHHHHHhC----C-CcEE
Confidence 356789999875 233 2344444333322110 0 0012233346888999999999998766 2 3778
Q ss_pred EEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 124 VVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 124 ~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
++|+| ++++..++.+++++||.|++++|+|+.+...+.. .|++++.++. .|++.+++.+++......++++
T Consensus 107 ~~tsG-~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~-~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~ 177 (397)
T PRK06939 107 LYSSC-FDANGGLFETLLGKEDAIISDALNHASIIDGVRL-CKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKL 177 (397)
T ss_pred EEcCh-HHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHh-cCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeE
Confidence 88888 7788888999999999999999999999888885 8998887763 4788999888754322335666
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
|+..+.+||||...+ +++|+++|++|+++||+||+|+...+.... .+...... ...+.+++++||||.++
T Consensus 178 v~~~~v~~~~G~~~~---~~~l~~la~~~~~~li~De~~~~g~~~~~~-~~~~~~~~----~~~~~~i~~~S~sK~~~-- 247 (397)
T PRK06939 178 IATDGVFSMDGDIAP---LPEICDLADKYDALVMVDDSHAVGFVGENG-RGTVEHFG----VMDRVDIITGTLGKALG-- 247 (397)
T ss_pred EEEecCcCCCCCcCC---HHHHHHHHHHhCCEEEEECcccccCcCCCC-CCHHHHcC----CCCCCcEEEEECHHHhC--
Confidence 676667899998655 888999999999999999999632222111 11111111 01245688999999984
Q ss_pred CceeEEEeecCHHHHHHHHHcccc----CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 046900 284 GFRVGTIYSYNDKVVTTARRMSSF----TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK 359 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 359 (442)
|+|+||++++ +.+.+.+...... ...++..+.++.+.++. +. ...+.++.++++++++.+.|++.|+++..
T Consensus 248 g~r~G~v~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~---~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 322 (397)
T PRK06939 248 GASGGYTAGR-KEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLEL---LE-ESDELRDRLWENARYFREGMTAAGFTLGP 322 (397)
T ss_pred ccCceEEEeC-HHHHHHHHHhCccccccCCCCHHHHHHHHHHHHH---Hh-cCHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 5699999985 5566665543221 11223334444444432 11 12466788999999999999988887766
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC--CCCCEEEEEeec-CCHHHHHHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC--SEPGWFRVCFAN-MSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~--~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~ 436 (442)
+.++++. +.++... +..++++.|+++ ||.+.++. |+. .+.+++|++++. .+++++++++++|++++++
T Consensus 323 ~~~~~~~-~~~~~~~------~~~~~~~~L~~~-gI~v~~~~-~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 323 GEHPIIP-VMLGDAK------LAQEFADRLLEE-GVYVIGFS-FPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKE 393 (397)
T ss_pred CCCCEEE-EEECCHH------HHHHHHHHHHHC-CceEeeeC-CCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 6666553 3444311 357889999888 99998644 432 224689999863 4899999999999999876
Q ss_pred H
Q 046900 437 R 437 (442)
Q Consensus 437 ~ 437 (442)
.
T Consensus 394 ~ 394 (397)
T PRK06939 394 L 394 (397)
T ss_pred h
Confidence 5
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-30 Score=252.99 Aligned_cols=318 Identities=17% Similarity=0.240 Sum_probs=234.0
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcE
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIK 168 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~ 168 (442)
..|++..|..+|+++++++++ .+++++|+|+++++.+++.++++|||.| +++|.|..+...+.. .|++
T Consensus 47 ~~Y~~~~g~~~Leeaia~~~g----------~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~~-~Ga~ 114 (431)
T cd00617 47 EAYAGSKSFYDLEDAVQDLFG----------FKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHFDTTRGHIEA-NGAV 114 (431)
T ss_pred CccCCCCCHHHHHHHHHHHHC----------CCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccchHHHHHh-CCCE
Confidence 359999999999999999986 3579999999999999999999999987 699999999888885 9999
Q ss_pred EEEEecCCCCC------Cc--CCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC-CcCCCHHHHHHHHHHHHhcCcEEEEe
Q 046900 169 IVPIHCDSSNN------FQ--ITPQALEAAYKEAESKDMRVRGVLITNPSNPL-GATIQRSVLEELLDFATRKNIHLVSD 239 (442)
Q Consensus 169 v~~v~~~~~~~------~~--~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPt-G~~~~~~~l~~l~~~~~~~~~~vi~D 239 (442)
++.++++++.+ |. +|++.|++.+++.. ..++++|++++|+||+ |.+++.+++++|.++|++||++||+|
T Consensus 115 pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~--~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~D 192 (431)
T cd00617 115 PVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVG--AENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLD 192 (431)
T ss_pred eEEEecccccccccccCCCCCcCHHHHHHHhCccc--CCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 99999976532 44 99999999997520 1247889999999998 99999999999999999999999999
Q ss_pred ccCCc--CCC-----CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce------eEEEeecCHHHHHHHHHcc-
Q 046900 240 EIYSG--SAF-----SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR------VGTIYSYNDKVVTTARRMS- 305 (442)
Q Consensus 240 e~y~~--~~~-----~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R------iG~i~~~~~~~~~~~~~~~- 305 (442)
++... ..| ++....++.++.. .+.|+||.+.++|+| .||++++++.+.+.++...
T Consensus 193 aAr~~~na~~i~~r~~g~~~~si~ei~~-----------e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~ 261 (431)
T cd00617 193 AARFAENAYFIKEREEGYRDKSIAEIAR-----------EMFSYADGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVV 261 (431)
T ss_pred chhhHhhhhhhhcccccccCCCHHHHHH-----------HhhccCCEEEEEeecCCCCccceEEEeCcHHHHHHHHHhcc
Confidence 99542 122 2333445655432 356777777777776 5799997666777666422
Q ss_pred ------ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccC-
Q 046900 306 ------SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQT- 378 (442)
Q Consensus 306 ------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~- 378 (442)
++++.+.-...+++..|..... .++ +.+.++ +++++.+.|.+.|+.+..|.||+++|++.+.......
T Consensus 262 ~~~~~~~~gG~~~r~~~A~A~gL~e~~~-~~~---l~~~~~-~r~~l~~~L~~~G~~v~~P~Ggh~v~~d~~~~~~~~~~ 336 (431)
T cd00617 262 LYEGFVTYGGMAGRDMEALAQGLREAVE-EDY---LRHRVE-QVRYLGDRLDEAGVPIVEPAGGHAVFIDAREFLPHIPQ 336 (431)
T ss_pred ccCCccccccccHHHHHHHHHHHHhccc-HHH---HHHHHH-HHHHHHHHHHHCCCCccCCCcceEEEEEhHHhcCCCCc
Confidence 1122233322333334433110 122 333333 5689999999999999999999999999886432111
Q ss_pred -hhhHHHHHHHHHHcCcEEEeC-CCCC-CC--C-------CCCEEEEEee--cCCHHHHHHHHHHHHHHHHH
Q 046900 379 -REGELALWDSMLHEVKLNISP-GSSC-HC--S-------EPGWFRVCFA--NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 379 -~~~~~~l~~~l~~~~gi~v~p-g~~f-~~--~-------~~~~iRls~~--~~~~e~i~~~l~~l~~~l~~ 436 (442)
..++.+++.+|+++.||.+.- |+.. +. . ....+||++. ..+.++++...++|..+.++
T Consensus 337 ~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 337 EQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred ccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence 114789999999999999653 4421 11 1 1257999986 33889999999999888775
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.4e-30 Score=249.66 Aligned_cols=300 Identities=15% Similarity=0.221 Sum_probs=212.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS 176 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~ 176 (442)
+..+++++|+|++ .+++++++|+++++..++.+++++||.|+++.+.|......++. .|++++.+|.++
T Consensus 53 ~~~~~e~lA~~~g----------~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~-~g~~~~~~~~~~ 121 (370)
T TIGR02539 53 IHDFLEDLAEFLG----------MDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAER-AGLNVKEVPHTG 121 (370)
T ss_pred HHHHHHHHHHHhC----------CCceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHH-cCCEEEEEecCC
Confidence 4677888888875 34577899999999999999999999999998886655566774 899999999876
Q ss_pred CCCCcCCHHHHHHHHHHHHhc-CCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccH
Q 046900 177 SNNFQITPQALEAAYKEAESK-DMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSI 255 (442)
Q Consensus 177 ~~~~~~d~~~l~~~l~~~~~~-~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~ 255 (442)
+.+|.+|+++|++.+++.... ..++++|++++|+||||...+ +++|+++|+++|+++|+||+|+.... ..+.
T Consensus 122 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~----~~~~ 194 (370)
T TIGR02539 122 HPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRM----PVSA 194 (370)
T ss_pred cccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCc----CCCH
Confidence 667889999999998753211 136789999999999999888 66778888899999999999986321 1122
Q ss_pred HHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHH----------HHHHHHHHhcCc
Q 046900 256 AEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQ----------TQYLLASMLSNK 325 (442)
Q Consensus 256 ~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~----------~q~~~~~~l~~~ 325 (442)
... +..++++|+||+++ +|.|+||++++ +.+.+.++....++..+.+ .+.++...+..
T Consensus 195 ~~~---------~~di~v~s~sK~~~-~~g~~G~l~~~-~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~- 262 (370)
T TIGR02539 195 KEI---------GADFIVGSGHKSMA-ASGPCGVLGMS-EEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH- 262 (370)
T ss_pred HHc---------CCCEEEeeCccccc-CCCCEEEEEEC-HHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHH-
Confidence 211 23467799999998 67789999994 5666666654443322211 33333443432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeee--cCCceEEEEEecCCccc--ccChhhHHHHHHHHHHcCcEE-EeCC
Q 046900 326 KFTENYIKTNRERLQKRYQMIIEGLRSAGIECL--KGNAGLFCWMNLSPLLE--EQTREGELALWDSMLHEVKLN-ISPG 400 (442)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~gi~-v~pg 400 (442)
..++++...+.++.. +++.+.|++.|+++. .+..+.|++++++.... ......+..+.+.|.++ ||. +++|
T Consensus 263 --~~~~l~~~~~~~~~~-~~l~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~-GI~~ir~~ 338 (370)
T TIGR02539 263 --VVERVKRWDEEVKKT-RWFVAELEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKR-GIHGIRSG 338 (370)
T ss_pred --HHHHHHHHHHHHHHH-HHHHHHHHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhC-CCccccCC
Confidence 133444444555554 589999999998863 24456688888764210 00011234677777666 997 5542
Q ss_pred CCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 401 SSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 401 ~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
.++++|+++...+++++++++++|++++++
T Consensus 339 ------~~~~iRis~~~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 339 ------QTKYFKLSVYGLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred ------cceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 246899997433899999999999998765
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-29 Score=254.06 Aligned_cols=356 Identities=14% Similarity=0.139 Sum_probs=246.9
Q ss_pred CCCceeeeecccc-cc-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcE
Q 046900 46 NPSGVIQMGLAEN-QV-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRI 123 (442)
Q Consensus 46 ~~~~~i~l~~~~n-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i 123 (442)
+..++|||+++.. .+ .++.+.+.+.+.... .|.........|++..++.+|+++||++++ .++.|
T Consensus 107 ~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~----~G~g~~g~r~~yg~~~~~~~Lee~La~~~~---------~~~~i 173 (481)
T PLN02822 107 NGKDVVNFASANYLGLIGNEKIKESCTSALEK----YGVGSCGPRGFYGTIDVHLDCETKIAKFLG---------TPDSI 173 (481)
T ss_pred CCceEEEeECCCcCCCCCCHHHHHHHHHHHHH----hCCCCcccCccccCHHHHHHHHHHHHHHhC---------CCCEE
Confidence 3467899987643 22 334444444433221 122112223357777789999999999986 35789
Q ss_pred EEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhc---CCc
Q 046900 124 VVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESK---DMR 200 (442)
Q Consensus 124 ~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~---~~~ 200 (442)
++++|.+ ++..++.+++++||.|+++..+|..+...+.. .|.+++.++.+ |.+.++..+++.... ..+
T Consensus 174 ~~s~G~~-a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~l-s~~~~~~~~~n-------d~~~l~~~l~~~~~~~~~~~~ 244 (481)
T PLN02822 174 LYSYGLS-TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYL-SRSTIVYFKHN-------DMESLRNTLEKLTAENKRKKK 244 (481)
T ss_pred EECCHHH-HHHHHHHHhCCCCCEEEEeCCccHHHHHHHHH-cCCeEEEECCC-------CHHHHHHHHHHHhhhhcccCC
Confidence 9998877 57888899999999999988888777777775 78899988764 456666666543321 123
Q ss_pred e-eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCccc
Q 046900 201 V-RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKD 279 (442)
Q Consensus 201 ~-~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~ 279 (442)
+ ++|++..++|+||.+.+ +++|+++|++|++++|+||+|+..+++.. ...+.+... ....+..++++||||+
T Consensus 245 ~~~~Ivve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~-G~G~~e~~~---v~~~~~dii~~s~sKa 317 (481)
T PLN02822 245 LRRYIVVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKS-GRGLSEHFG---VPIEKIDIITAAMGHA 317 (481)
T ss_pred CcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC-CCChHHHcC---CCCCCCeEEEecchhh
Confidence 4 67788888999999999 78899999999999999999997766522 112222211 0012456889999999
Q ss_pred CCCCCceeEEEeecCHHHHHHHHHcccc--CC--CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Q 046900 280 LGLPGFRVGTIYSYNDKVVTTARRMSSF--TL--ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-G 354 (442)
Q Consensus 280 ~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 354 (442)
+|++| ||+++ ++.+.+.++..... ++ .+++.|.++.+.++. +++ ..+.++.++++++++.+.|++. |
T Consensus 318 lg~~G---G~i~g-~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~---l~~-~~~~~~~l~~~~~~l~~~L~~~~g 389 (481)
T PLN02822 318 LATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV---LED-NPSVLAKLKENIALLHKGLSDIPG 389 (481)
T ss_pred hhhCC---eEEEc-CHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHH---HHh-CHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99888 99998 56666666543321 22 235666776666642 222 2467788999999999999886 8
Q ss_pred CeeecCCceEEEEEecCCcccc--cChhhHHHHHHHHHHcCcEEEeCC--CCCCCC-CCCEEEEEee-cCCHHHHHHHHH
Q 046900 355 IECLKGNAGLFCWMNLSPLLEE--QTREGELALWDSMLHEVKLNISPG--SSCHCS-EPGWFRVCFA-NMSEQTLEVALK 428 (442)
Q Consensus 355 ~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~gi~v~pg--~~f~~~-~~~~iRls~~-~~~~e~i~~~l~ 428 (442)
+++..+.+++++++.+++.... .+.....+++++|++++||.+.|+ ..|... .+.++|++++ ..++++|+++++
T Consensus 390 ~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~ 469 (481)
T PLN02822 390 LSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASE 469 (481)
T ss_pred cccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHH
Confidence 8887778888999998642110 011124688999986669999976 444321 2357999876 238999999999
Q ss_pred HHHHHHHHHH
Q 046900 429 RIHNFMQKRE 438 (442)
Q Consensus 429 ~l~~~l~~~~ 438 (442)
+|++++.+..
T Consensus 470 ~l~~~~~~~~ 479 (481)
T PLN02822 470 SLKRVAASVL 479 (481)
T ss_pred HHHHHHHHHh
Confidence 9999988753
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.8e-30 Score=248.49 Aligned_cols=292 Identities=14% Similarity=0.126 Sum_probs=209.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS 176 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~ 176 (442)
..+++++++++++ .+++|++++|+.+.+ .++.+++++||.|+++.|+|+.+...++. .|++++.++.
T Consensus 63 ~~~l~~~la~~~~---------~~~~i~~~~G~~~~~-~~l~~~~~~gd~v~~~~~~~~~~~~~~~~-~g~~~~~~~~-- 129 (360)
T TIGR00858 63 HEELEEELAEWKG---------TEAALLFSSGYLANV-GVISALVGKGDLILSDALNHASLIDGCRL-SGARVRRYRH-- 129 (360)
T ss_pred HHHHHHHHHHHhC---------CCCEEEECchHHHHH-HHHHHhCCCCCEEEEEccccHHHHHHHHh-cCCceEEecC--
Confidence 4567777777764 256788888865554 56678889999999999999999988885 8999888763
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHH
Q 046900 177 SNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIA 256 (442)
Q Consensus 177 ~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~ 256 (442)
+|++.+++.+++.. +.+++++++++++||||...+ +++|.++|++++++||+||+|..+.++... .+..
T Consensus 130 -----~d~~~l~~~~~~~~--~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~ 198 (360)
T TIGR00858 130 -----NDVEHLERLLEKNR--GERRKLIVTDGVFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDG-RGTL 198 (360)
T ss_pred -----CCHHHHHHHHHHcc--cCCCeEEEEeCCccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCC-CchH
Confidence 57899999886521 124678888889999998877 778888899999999999999876554321 2222
Q ss_pred HHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc----CCCcHHHHHHHHHHhcCchhHHHHH
Q 046900 257 EILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF----TLISSQTQYLLASMLSNKKFTENYI 332 (442)
Q Consensus 257 ~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~ 332 (442)
.... ....+++++++||||.||++| ||+++ ++.+.+.+...... ...++..+.++.+.++.. . ..
T Consensus 199 ~~~~---~~~~~~~i~i~s~sK~~~~~g---G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~-~~ 267 (360)
T TIGR00858 199 EHFG---LKPEPVDIQVGTLSKALGSYG---AYVAG-SQALIDYLINRARTLIFSTALPPAVAAAALAALELI---Q-EE 267 (360)
T ss_pred HhcC---CCccCCcEEEEechhhhhccC---cEEEc-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH---h-hC
Confidence 2211 011367899999999998766 99998 45555555432211 223444444555555421 1 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC-CCCCEE
Q 046900 333 KTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC-SEPGWF 411 (442)
Q Consensus 333 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~-~~~~~i 411 (442)
++.+++++++++++.+.|++.++++.++ +++++|+.++... ++.++++.|+++ ||.+.++..+.. .+.+++
T Consensus 268 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~l~~~-gI~v~~~~~~~~~~~~~~i 339 (360)
T TIGR00858 268 PWRREKLLALIARLRAGLEALGFTLMPS-CTPIVPVIIGDNA------SALALAEELQQQ-GIFVGAIRPPTVPAGTSRL 339 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccCCC-CCCEEEEEeCCHH------HHHHHHHHHHHC-CeeEeeeCCCCCCCCCceE
Confidence 4567899999999999999888776644 5568998876421 356888888766 999998766543 234689
Q ss_pred EEEeec-CCHHHHHHHHHHHH
Q 046900 412 RVCFAN-MSEQTLEVALKRIH 431 (442)
Q Consensus 412 Rls~~~-~~~e~i~~~l~~l~ 431 (442)
||+++. .+++++++++++|+
T Consensus 340 Ris~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 340 RLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred EEEEcCCCCHHHHHHHHHhhC
Confidence 999972 37899999998873
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-29 Score=249.93 Aligned_cols=298 Identities=18% Similarity=0.148 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCC
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSS 177 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~ 177 (442)
.+||+++|++++ .+++++++|+++++..++.+++++||.|+++.|.|+.+...++. .+.+.+.++
T Consensus 86 ~~le~~ia~~~g----------~~~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~-~~~~~~~~~---- 150 (393)
T TIGR01822 86 KELEAKIAAFLG----------TEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRL-CKAKRYRYA---- 150 (393)
T ss_pred HHHHHHHHHHhC----------CCcEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHh-cCCceEEeC----
Confidence 788999998876 35688889999999999999999999999999999999888874 777765543
Q ss_pred CCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHH
Q 046900 178 NNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAE 257 (442)
Q Consensus 178 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~ 257 (442)
.+|++++++.+++....+.++++|++.+++||||.+.+ +++|+++|++||+++|+||+|+...++ ....+...
T Consensus 151 ---~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~-~~~~~~~~ 223 (393)
T TIGR01822 151 ---NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLG-PTGRGSHE 223 (393)
T ss_pred ---CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcC-CCCCchHH
Confidence 26899999999864333336778888889999999987 788889999999999999999643332 22222222
Q ss_pred HHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc-cc-C--CCcHHHHHHHHHHhcCchhHHHHHH
Q 046900 258 ILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS-SF-T--LISSQTQYLLASMLSNKKFTENYIK 333 (442)
Q Consensus 258 ~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~-~~-~--~~s~~~q~~~~~~l~~~~~~~~~~~ 333 (442)
...- ..+..++++|+||.+ +|+|+||+++ ++.+.+.++... .+ + ..++..+.++.+.++ .. +..+
T Consensus 224 ~~~~----~~~~di~~~s~sK~l--~g~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~---~~-~~~~ 292 (393)
T TIGR01822 224 LCGV----MGRVDIITGTLGKAL--GGASGGFTTA-RKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLE---ML-EASN 292 (393)
T ss_pred hcCC----CCCCeEEEEEChHHh--hCCCcEEEEe-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHH---HH-hcCH
Confidence 2110 124568899999987 4789999998 466666665432 22 1 223333344444443 21 1245
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC--CCCCEE
Q 046900 334 TNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC--SEPGWF 411 (442)
Q Consensus 334 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~--~~~~~i 411 (442)
+.+++++++++++.+.|++.|+++.++.++ ++.+.++... .+.+++..|+++ ||.+. +..|.. .+...+
T Consensus 293 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~i~~~~~~------~~~~l~~~L~~~-gI~v~-~~~~~~~~~~~~~i 363 (393)
T TIGR01822 293 ELRDRLWANTRYFRERMEAAGFDIKPADHP-IIPVMLYDAV------LAQRFARRLLEE-GIYVT-GFFYPVVPKGQARI 363 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-EEEEEeCCHH------HHHHHHHHHHHC-CeeEe-eeCCCCCCCCCceE
Confidence 677889999999999998888877655555 4444544321 357888888877 99998 555532 123469
Q ss_pred EEEeec-CCHHHHHHHHHHHHHHHHHH
Q 046900 412 RVCFAN-MSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 412 Rls~~~-~~~e~i~~~l~~l~~~l~~~ 437 (442)
|++++. .+++++++++++|+++.++.
T Consensus 364 Ris~~~~~t~edi~~~~~~l~~~~~~~ 390 (393)
T TIGR01822 364 RVQISAAHTEEQLDRAVEAFTRIGREL 390 (393)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 988862 27999999999999987654
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=246.14 Aligned_cols=343 Identities=14% Similarity=0.124 Sum_probs=238.8
Q ss_pred CCCceeeeeccc-ccc-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcE
Q 046900 46 NPSGVIQMGLAE-NQV-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRI 123 (442)
Q Consensus 46 ~~~~~i~l~~~~-n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i 123 (442)
...++|||+.+. ..+ +.+.+.+.+.+..... + .....|....|..++++++++++.+..+ .++.|
T Consensus 31 ~g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~----~----~~~~~~~~~~g~~~l~~~l~~~l~~~~g-----~~~~i 97 (385)
T TIGR01825 31 NGKEVINLSSNNYLGFADHPRLKEAAAQAIQQY----G----VGAGAVRTIAGTLRLHEELEEKLAKFKK-----TEAAL 97 (385)
T ss_pred CCceEEEeeccCccCCCCCHHHHHHHHHHHHHc----C----CCCCccCcccCCcHHHHHHHHHHHHHhC-----CCcEE
Confidence 346789999875 234 3455544444332110 0 1124576778999999999999998765 24578
Q ss_pred EEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 124 VVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 124 ~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
++++| ++++..++.+++++||.|+++.|+|+.+...+.. .|+++..++ .+|++++++.+++.. ..++++
T Consensus 98 ~~~sG-~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~-~g~~~~~~~-------~~d~~~l~~~l~~~~--~~~~~~ 166 (385)
T TIGR01825 98 VFQSG-FNTNQGVLSALLRKGDIVLSDELNHASIIDGLRL-TKATKKIYK-------HADMDDLDRVLRENP--SYGKKL 166 (385)
T ss_pred EECcH-HHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHh-cCCceEEeC-------CCCHHHHHHHHHhhc--cCCCeE
Confidence 88888 4566678888899999999999999998877774 788876654 278889998887532 135778
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
+++++++||||.+.+ +++|.++|++||+++|+||+|+.+.++.........+.- ..+.+++++||||.+|++
T Consensus 167 v~~~~v~~~tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~s~sK~~~~~ 238 (385)
T TIGR01825 167 IVTDGVFSMDGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGL-----EDKVDIQVGTLSKAIGVV 238 (385)
T ss_pred EEEecCCcCCCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCC-----CcCCcEEEEeccHHhhcC
Confidence 887788999999988 678889999999999999999876654221111111111 136789999999999866
Q ss_pred CceeEEEeecCHHHHHHHHHccc-c--C-CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 046900 284 GFRVGTIYSYNDKVVTTARRMSS-F--T-LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK 359 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~~-~--~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 359 (442)
| ||+++ ++.+.+.+..... + . ..+++.+.++.+.++.. .+. .+..+++.++++++.+.|++.|+++..
T Consensus 239 g---G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~ 310 (385)
T TIGR01825 239 G---GYAAG-HKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDEL---QRS-PELMERLWDNTRFFKAGLGKLGYDTGG 310 (385)
T ss_pred C---CEEec-CHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHH---hcC-HHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 6 99988 5556666554322 2 2 23456666666666432 111 234566778899999999988988877
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC--CCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC--SEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~--~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
+.++ ++++.++.. .+..++++.|+++ ||.+. +..|+. .+..++|++++ ..+++++++++++|++++++
T Consensus 311 ~~~~-~~~~~~~~~------~~~~~~~~~L~~~-gi~v~-~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 311 SETP-ITPVVIGDE------KAAQEFSRRLFDE-GIFAQ-SIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred CCCC-EEEEEECCH------HHHHHHHHHHHHC-CcEEc-ccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 7766 444444321 1356788999888 99985 444542 23468999875 34899999999999999865
Q ss_pred H
Q 046900 437 R 437 (442)
Q Consensus 437 ~ 437 (442)
+
T Consensus 382 ~ 382 (385)
T TIGR01825 382 L 382 (385)
T ss_pred h
Confidence 3
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-29 Score=249.17 Aligned_cols=312 Identities=17% Similarity=0.166 Sum_probs=219.7
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCc
Q 046900 88 NALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGI 167 (442)
Q Consensus 88 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~ 167 (442)
...|+...++.+|++++|+|++ .++.|++++|. .++..++.+++++||.|++++|+|+.+...++. .|+
T Consensus 139 r~~~g~~~~~~ele~~lA~~~g---------~~~ai~~~~G~-~an~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~-~Ga 207 (489)
T PLN02483 139 RVDGGTTKLHRELEELVARFVG---------KPAAIVFGMGY-ATNSTIIPALIGKGGLIISDSLNHNSIVNGARG-SGA 207 (489)
T ss_pred ccccCCcHHHHHHHHHHHHHhC---------CCcEEEECCHH-HHHHHHHHHhCCCCCEEEEcchhhHHHHHHHHH-cCC
Confidence 3457777889999999999987 25677777764 445577788999999999999999999999885 999
Q ss_pred EEEEEecCCCCCCcCCHHHHHHHHHHHHhcC-Cc-----eeEEEEeCC-CCCCCcCCCHHHHHHHHHHHHhcCcEEEEec
Q 046900 168 KIVPIHCDSSNNFQITPQALEAAYKEAESKD-MR-----VRGVLITNP-SNPLGATIQRSVLEELLDFATRKNIHLVSDE 240 (442)
Q Consensus 168 ~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~-~~-----~~~v~l~~P-~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De 240 (442)
+++.++.+ |++++++.+++....+ ++ .++++++++ .|++|.+.+ +++|+++|++|++++|+||
T Consensus 208 ~v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~---l~~I~~la~~~~~~livDE 277 (489)
T PLN02483 208 TIRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCK---LPEIVAVCKKYKAYVYLDE 277 (489)
T ss_pred eEEEEeCC-------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccC---HHHHHHHHHHcCCEEEEEC
Confidence 99999853 5677777776432110 12 256677766 599999987 8888899999999999999
Q ss_pred cCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc---cC-CCc-HHHH
Q 046900 241 IYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS---FT-LIS-SQTQ 315 (442)
Q Consensus 241 ~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~---~~-~~s-~~~q 315 (442)
+|+...++ .......++.. .+..+.+|+++||||+||++| ||+++ ++.+.+.++.... +. .++ +..|
T Consensus 278 a~s~g~~G-~~G~g~~~~~~---v~~~~~dI~~~SfSKs~g~~G---G~i~~-~~~li~~l~~~~~~~~~~~~~~p~~~~ 349 (489)
T PLN02483 278 AHSIGAVG-KTGRGVCELLG---VDPADVDIMMGTFTKSFGSCG---GYIAG-SKELIQYLKRTCPAHLYATSMSPPAVQ 349 (489)
T ss_pred cCccCccC-CCCCchHHhcC---CCcccCcEEEEecchhcccCc---eEEEc-CHHHHHHHHHhCccccccCCcCHHHHH
Confidence 99854332 21112222211 011356789999999999877 99998 5667777665422 21 223 3344
Q ss_pred HHHHHHhc---CchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHc
Q 046900 316 YLLASMLS---NKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHE 392 (442)
Q Consensus 316 ~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 392 (442)
.+ .+.++ ..+. .++..+.++.++++++++.+.|++.|+.+..+.++..+|+.+.... ...++++.|+++
T Consensus 350 ~~-~aaL~~l~~~~g-~~~~~~~~~~l~~~~~~l~~~L~~~G~~v~~~~~sp~~~l~l~~~~------~~~~~~~~Ll~~ 421 (489)
T PLN02483 350 QV-ISAIKVILGEDG-TNRGAQKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPA------KIPAFSRECLKQ 421 (489)
T ss_pred HH-HHHHHHHHhCcc-ccchHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCCEEEEEECCHH------HHHHHHHHHHHC
Confidence 33 33332 1110 1223455778999999999999999988776666667776654321 255788888887
Q ss_pred CcEEEeCCCCCCC--CCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHHH
Q 046900 393 VKLNISPGSSCHC--SEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 393 ~gi~v~pg~~f~~--~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~~ 438 (442)
||.+.| ..|.. ...+++|++++. .++|++++++++|.++++...
T Consensus 422 -GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~~ 468 (489)
T PLN02483 422 -NVAVVV-VGFPATPLLLARARICISASHSREDLIKALEVISEVGDLVG 468 (489)
T ss_pred -CcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 999997 55532 234689999973 489999999999999987653
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-29 Score=240.99 Aligned_cols=334 Identities=15% Similarity=0.189 Sum_probs=220.7
Q ss_pred CceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEec
Q 046900 48 SGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA 127 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~ 127 (442)
+.+++|+.++++.|.+.+.+.+...... .....|++ ...+||+++|++++. +.+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~----------~~~~~~~~--~~~~l~~~la~~~~~----------~~~~~~~ 62 (353)
T PLN02721 5 SRVVDLRSDTVTKPTDAMRAAMANAEVD----------DDVLGYDP--TALRLEEEMAKIFGK----------EAALFVP 62 (353)
T ss_pred hhhhhhhcccccCCCHHHHHHHHhccCC----------CcccCCCH--HHHHHHHHHHHHhCC----------ceeEEec
Confidence 3568999999888877777776653110 01223332 368999999999862 2345555
Q ss_pred ChHHHHHHHHHhhcC-CCCeEEEcCCCCcChHH---hHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcC-Ccee
Q 046900 128 GATAANELLTFILAD-PGDALLVPTPYYPGFDR---DLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKD-MRVR 202 (442)
Q Consensus 128 G~~~ai~~~~~~l~~-~gd~Vl~~~p~y~~~~~---~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~-~~~~ 202 (442)
++++++..++.+++. +||.|++++|+|..... .+. ..|++++.+|.++ .+.+|++.+++.+++....+ ++++
T Consensus 63 ~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~ 139 (353)
T PLN02721 63 SGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENGGIST-LGGVHPRTVKNNE--DGTMDLDAIEAAIRPKGDDHFPTTR 139 (353)
T ss_pred CccHHHHHHHHHHccCCCCeEEEcCccceehhcccchhh-hcCceeEecCCCc--CCCcCHHHHHHHHHhccCCCCCcce
Confidence 556666677777777 99999999999864443 345 4899999998764 45689999999997421111 3788
Q ss_pred EEEEeCC-CCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC
Q 046900 203 GVLITNP-SNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG 281 (442)
Q Consensus 203 ~v~l~~P-~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g 281 (442)
+++++++ +||||.+++.+++++|+++|+++|+++|+||+|...... ....+...+... .+ .++.|+||.++
T Consensus 140 ~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~-~~~~~~~~~~~~-----~d--~~~~s~sK~l~ 211 (353)
T PLN02721 140 LICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASV-ALGVPVHRLVKA-----AD--SVSVCLSKGLG 211 (353)
T ss_pred EEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchh-hhCCCHHHHhhh-----CC--EEEEecccccC
Confidence 9999875 789999999999999999999999999999998632110 001122223221 23 33457999986
Q ss_pred CCCceeEE-EeecCHHHHHHHHHccccC--CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCee
Q 046900 282 LPGFRVGT-IYSYNDKVVTTARRMSSFT--LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIEC 357 (442)
Q Consensus 282 ~~G~RiG~-i~~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 357 (442)
. ++|| +++ ++.+.+.+....... ..+...+.++..+.. ++++.+..+ +..++++++.+.|++. ++.+
T Consensus 212 ~---~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~-~~~~~~~~l~~~L~~~~~~~~ 282 (353)
T PLN02721 212 A---PVGSVIVG-SKSFIRKAKRLRKTLGGGMRQVGVLAAAALVA----LQENVPKLE-DDHKKAKLLAEGLNQIKGLRV 282 (353)
T ss_pred C---ceeeEEec-CHHHHHhHHHHHHhcCCCeehhHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHhCCCcEE
Confidence 3 3576 455 566665554433321 222222222222221 123333333 3356678999999887 6754
Q ss_pred --ecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHH
Q 046900 358 --LKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 358 --~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l 434 (442)
..+.+ .++|++++.... .+..++++.|.++ ||.+.|+. .+++|++++ ..+++++++++++|++++
T Consensus 283 ~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~L~~~-gi~v~~~~------~~~lR~~~~~~~~~~~i~~~~~~l~~~~ 350 (353)
T PLN02721 283 NVAAVET-NIVYFDITDGSR----ITAEKLCKSLEEH-GVLLMPGN------SSRIRVVTHHQISDSDVQYTLSCFQQAA 350 (353)
T ss_pred ecCCccc-eEEEEEccCCcc----ccHHHHHHHHHhC-CcEEecCC------CceEEEEecCcCCHHHHHHHHHHHHHHh
Confidence 34444 479999875210 0356788888755 99999973 458999997 448999999999999876
Q ss_pred H
Q 046900 435 Q 435 (442)
Q Consensus 435 ~ 435 (442)
.
T Consensus 351 ~ 351 (353)
T PLN02721 351 L 351 (353)
T ss_pred h
Confidence 5
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=246.91 Aligned_cols=295 Identities=15% Similarity=0.206 Sum_probs=213.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCcc-CCCcEEEecChHHHHHHHHHhh----cCCCCeEEEcCCCCcC----hHHhHhhhcCc
Q 046900 97 LKSFRQAMASFMEQIRGGRAKF-DLNRIVVTAGATAANELLTFIL----ADPGDALLVPTPYYPG----FDRDLRWRTGI 167 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~-~~~~i~~t~G~~~ai~~~~~~l----~~~gd~Vl~~~p~y~~----~~~~~~~~~G~ 167 (442)
+.++|+++|++++ + ++++|++|+|+++++.+++.++ +++||+|++++|.|+. +...++ ..|+
T Consensus 65 ~~~~r~~la~~~g--------~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~-~~g~ 135 (401)
T PRK10874 65 YEAAREQVAQLLN--------APDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQ-QTGA 135 (401)
T ss_pred HHHHHHHHHHHcC--------CCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHH-HhCC
Confidence 5688888888875 4 6889999999999999999988 4789999999999875 344455 4899
Q ss_pred EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCC
Q 046900 168 KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAF 247 (442)
Q Consensus 168 ~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~ 247 (442)
+++.++.+. ++.+|++++++.+++ +++++++++|+||||.+++ +++|+++|+++|+++|+|++|+...+
T Consensus 136 ~v~~v~~~~--~~~~d~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~ 204 (401)
T PRK10874 136 KVVKLPLGA--DRLPDVDLLPELITP------RTRILALGQMSNVTGGCPD---LARAITLAHQAGMVVMVDGAQGAVHF 204 (401)
T ss_pred EEEEEecCC--CCcCCHHHHHHhcCc------CcEEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEECCcccccc
Confidence 999999864 457899999999865 7899999999999999998 67888888999999999999974222
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc---------------------c
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS---------------------S 306 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~---------------------~ 306 (442)
..++..+ +..+++.|++|.+|.+| +||++++ +.+.+.+.... .
T Consensus 205 ----~~~~~~~---------~~d~~~~s~~K~~gp~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (401)
T PRK10874 205 ----PADVQAL---------DIDFYAFSGHKLYGPTG--IGVLYGK-SELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWR 268 (401)
T ss_pred ----cCCchhc---------CCCEEEEecccccCCCc--cEEEEEc-hHHHhcCCCeecCCcceEeeccCccCCCCChhh
Confidence 1222222 23467899999998777 5999984 44444332111 0
Q ss_pred --cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEEEEecCCcccccChhhHH
Q 046900 307 --FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSPLLEEQTREGEL 383 (442)
Q Consensus 307 --~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 383 (442)
.++.+.+.+.++.+.++... +......+++.++.++++.+.|+++ |++...+..+.++++.++.. +..
T Consensus 269 ~e~Gt~~~~~~~al~~al~~l~--~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~-------~~~ 339 (401)
T PRK10874 269 FEAGTPNVAGVIGLSAALEWLA--DIDINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGV-------HHS 339 (401)
T ss_pred ccCCCcCHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCc-------CHH
Confidence 12233345555555543111 1113345677777888999999886 88777655555666676542 245
Q ss_pred HHHHHHHHcCcEEEeCCCCCCC------CCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHH
Q 046900 384 ALWDSMLHEVKLNISPGSSCHC------SEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 384 ~l~~~l~~~~gi~v~pg~~f~~------~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~ 437 (442)
++.+.|.+ +||.+++|..|.. ...+++|+|+.. .++++++++++.|+++++.+
T Consensus 340 ~~~~~L~~-~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 340 DLVTLLAE-YGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred HHHHHHHH-CCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 67777655 5999999986642 124789999982 27999999999999987754
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=243.64 Aligned_cols=296 Identities=17% Similarity=0.184 Sum_probs=211.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCcc-CCCcEEEecChHHHHHHHHHhh----cCCCCeEEEcCCCCcC----hHHhHhhhcC
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKF-DLNRIVVTAGATAANELLTFIL----ADPGDALLVPTPYYPG----FDRDLRWRTG 166 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~-~~~~i~~t~G~~~ai~~~~~~l----~~~gd~Vl~~~p~y~~----~~~~~~~~~G 166 (442)
.+.++|+++|++++ + ++++|++|+|+++++.+++.++ +++||+|++++|.|+. +...++ ..|
T Consensus 61 ~~~~~r~~la~~~g--------~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~-~~g 131 (398)
T TIGR03392 61 RYELARQQVARFLN--------APDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQ-QTG 131 (398)
T ss_pred HHHHHHHHHHHHhC--------CCCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHH-HcC
Confidence 35678889998876 4 4789999999999999999887 4789999999999876 334456 489
Q ss_pred cEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 167 IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 167 ~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
++++.+|++. ++.+|++.+++.+.+ +++++++++|+||||.+++ +++|+++|+++|+++|+|++|+...
T Consensus 132 ~~v~~v~~~~--~~~~~~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~ 200 (398)
T TIGR03392 132 AKVVKLPIGA--DLLPDIRQLPELLTP------RTRILALGQMSNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVVH 200 (398)
T ss_pred cEEEEEecCC--CCCcCHHHHHHHhcc------CceEEEEECccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCC
Confidence 9999999875 356899999998865 7899999999999999998 6778888999999999999997432
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc---------------------
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS--------------------- 305 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~--------------------- 305 (442)
+ ...+... +..+++.|++|.+|.+| +||++++ +.+.+.+....
T Consensus 201 ~----~~~~~~~---------~~d~~~~s~~K~~gp~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (398)
T TIGR03392 201 G----PPDVQAL---------DIDFYAFSGHKLYGPTG--IGVLYGK-TELLEAMPPWQGGGKMLSHVSFDGFIPQAVPH 264 (398)
T ss_pred C----CCChhhc---------CCCEEEEecccccCCCc--eEEEEEc-HHHHhhCCCeecCCceEeeccccccccCCChh
Confidence 2 1222222 22367788899988666 8999985 44444332110
Q ss_pred c--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEEEEecCCcccccChhhH
Q 046900 306 S--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSPLLEEQTREGE 382 (442)
Q Consensus 306 ~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 382 (442)
. .++.+.+...++.+.++-.. +....+.+++.++.++++.+.|.++ |+++..+..+.++++.++.. +.
T Consensus 265 ~~e~GT~~~~~~~a~~~al~~l~--~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~-------~~ 335 (398)
T TIGR03392 265 RFEAGTPNIAGVIGLSAALEWLT--DIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGV-------HH 335 (398)
T ss_pred hccCCCCCHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCc-------CH
Confidence 0 01223333333333333110 1113455667777788888888876 77776544555676666542 24
Q ss_pred HHHHHHHHHcCcEEEeCCCCCCC------CCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHH
Q 046900 383 LALWDSMLHEVKLNISPGSSCHC------SEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 383 ~~l~~~l~~~~gi~v~pg~~f~~------~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~ 437 (442)
.++.+.|.+ +||.+++|..+.. ..++++|+|+.. -++++++++++.|+++++++
T Consensus 336 ~~l~~~L~~-~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 336 SDLAALLAE-SGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred HHHHHHHHh-CCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 567777755 4999999986531 124789999962 28999999999999988764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=241.51 Aligned_cols=341 Identities=16% Similarity=0.157 Sum_probs=223.7
Q ss_pred CCCceeeeeccccc-c-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcE
Q 046900 46 NPSGVIQMGLAENQ-V-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRI 123 (442)
Q Consensus 46 ~~~~~i~l~~~~n~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i 123 (442)
....+|||+.+++. + +++.+.+.+.+..... + .....|....|..++++.+++.+.+.++ .++.|
T Consensus 37 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~----~----~~~~~~~~~~g~~~~~~~l~~~la~~~~-----~~~~i 103 (385)
T PRK05958 37 DGRRMLNFASNDYLGLARHPRLIAAAQQAARRY----G----AGSGGSRLVTGNSPAHEALEEELAEWFG-----AERAL 103 (385)
T ss_pred CCceEEEeeCCCcccCCCCHHHHHHHHHHHHhc----C----CCCCCcCcccCCcHHHHHHHHHHHHHhC-----CCcEE
Confidence 45788999988652 2 3354555444332110 0 0011222233444455555555554433 24445
Q ss_pred EEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 124 VVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 124 ~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
+++ ++++++..++..++++||.|+++.|+|+.+...+.. .|++++.++. .|++.+++.+++. ..++.+
T Consensus 104 ~~~-~g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~-~g~~~~~~~~-------~d~~~l~~~i~~~---~~~~~l 171 (385)
T PRK05958 104 LFS-SGYAANLAVLTALAGKGDLIVSDKLNHASLIDGARL-SRARVRRYPH-------NDVDALEALLAKW---RAGRAL 171 (385)
T ss_pred EEC-cHHHHHHHHHHHhCCCCCEEEEeCccCHHHHHHHHh-cCCceEEeCC-------CCHHHHHHHHHhc---cCCCeE
Confidence 555 455666667788899999999999999999888885 8999888864 3788999988642 113445
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
+++.+++||||...+ +++|+++|++||+++|+||+|+.+.++.... ....... ....+++++++|+||.+|.+
T Consensus 172 vi~~~~~~~~G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~-~~~~~~~---~~~~~~~i~~~s~sK~~~~~ 244 (385)
T PRK05958 172 IVTESVFSMDGDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGR-GLAAEAG---LAGEPDVILVGTLGKALGSS 244 (385)
T ss_pred EEEEecccCCCCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCC-chHHhhC---CCCCCceEEEEechhhcccC
Confidence 555567899998877 7888899999999999999998655532111 1111100 01236789999999999876
Q ss_pred CceeEEEeecCHHHHHHHHHcc-cc---CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 046900 284 GFRVGTIYSYNDKVVTTARRMS-SF---TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK 359 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~-~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 359 (442)
| ||+++ ++.+.+.+.... .+ ...++..+.++.+.++... .. ...++.+.++++++.+.|++.|+++.+
T Consensus 245 G---g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~---~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~ 316 (385)
T PRK05958 245 G---AAVLG-SETLIDYLINRARPFIFTTALPPAQAAAARAALRILR---RE-PERRERLAALIARLRAGLRALGFQLMD 316 (385)
T ss_pred C---cEEEc-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHh---cC-HHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 7 99988 455665544322 21 2234444444545554221 11 356778889999999999988888776
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC-CCCCEEEEEee-cCCHHHHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC-SEPGWFRVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~-~~~~~iRls~~-~~~~e~i~~~l~~l~~~l 434 (442)
+.++ ++|+.++.. .++.++++.|.++ ||.+.++..+.. .+.+++||+++ ..+++++++++++|++++
T Consensus 317 ~~~~-~~~~~~~~~------~~~~~~~~~l~~~-gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 317 SQSA-IQPLIVGDN------ERALALAAALQEQ-GFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL 385 (385)
T ss_pred CCCC-EEEEEeCCH------HHHHHHHHHHHHC-CceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence 6665 677877642 1366888888776 999998654432 23468999997 338999999999998753
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=242.60 Aligned_cols=346 Identities=15% Similarity=0.134 Sum_probs=230.7
Q ss_pred ceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecC
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAG 128 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G 128 (442)
..|+|..++|.+++. +.+.+...... . .+... .....|....+...+++.+++++.+.+| ++..+|++++
T Consensus 20 ~~~~~~~~~~~~~~~-v~~a~~~~~~~-~--~~~g~-~~~~~~~~~~~~~~l~~~~~~~~~~~~g----~~~~~v~~~s- 89 (402)
T cd00378 20 ETLELIASENFTSPA-VMEAMGSDLTN-K--YAEGY-PGKRYYGGCEYVDEIEDLAIERAKKLFG----AEYANVQPHS- 89 (402)
T ss_pred hCeeeeccCCcCCHH-HHHHhcccccc-c--ccCCC-CCCcccCCchHHHHHHHHHHHHHHHHhC----CCceeeecCC-
Confidence 347888888877544 44444432210 0 11000 1123466666778888888888877766 3455666665
Q ss_pred hHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh-----HhhhcCcEEEEEecCCC-CCCcCCHHHHHHHHHHHHhcCCcee
Q 046900 129 ATAANELLTFILADPGDALLVPTPYYPGFDRD-----LRWRTGIKIVPIHCDSS-NNFQITPQALEAAYKEAESKDMRVR 202 (442)
Q Consensus 129 ~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~-----~~~~~G~~v~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~ 202 (442)
+++++..++.+++++||+|++++|+|+.+... +. ..|.++..++++.+ +++.+|++.+++.+.+ .+++
T Consensus 90 gt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~-----~~~~ 163 (402)
T cd00378 90 GSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVS-ASGKLFESVPYGVDPETGLIDYDALEKMALE-----FKPK 163 (402)
T ss_pred cHHHHHHHHHHhcCCCCEEEEecCccCcccccccccccc-ccceeEEEecCCcCcccCCcCHHHHHHHHHh-----CCCC
Confidence 57999999999999999999999999876443 45 37887777776544 2578999999999864 2678
Q ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccC-CcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC
Q 046900 203 GVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIY-SGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG 281 (442)
Q Consensus 203 ~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y-~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g 281 (442)
++++++|+||+ ..+ +++|+++|+++|++||+|++| .++.+.+....++. . .+ ++++|+||++
T Consensus 164 ~v~~~~~~~~~--~~~---~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~----~-----~d--v~~~s~sK~l- 226 (402)
T cd00378 164 LIVAGASAYPR--PID---FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP----G-----AD--VVTTTTHKTL- 226 (402)
T ss_pred EEEecCcccCC--CcC---HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc----C-----Cc--EEEeccccCC-
Confidence 88988998875 333 888999999999999999996 44444332111111 1 12 5789999977
Q ss_pred CCCceeEEEeecCHHHHHHHHHccccC--CCcH-HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 046900 282 LPGFRVGTIYSYNDKVVTTARRMSSFT--LISS-QTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECL 358 (442)
Q Consensus 282 ~~G~RiG~i~~~~~~~~~~~~~~~~~~--~~s~-~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 358 (442)
+|+|.||++++++.+.+.+.+....+ ..+. ..+.++...+.. ....+..+.+++++++++++.+.|.+.|+.+.
T Consensus 227 -~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 303 (402)
T cd00378 227 -RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKE--ALEPEFKAYAKQVVENAKALAEALKERGFKVV 303 (402)
T ss_pred -CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEe
Confidence 78999999997646666665433322 1222 222222222221 11224556778899999999999998898876
Q ss_pred -cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCC----CCCCCEEEEEeec-----CCHHHHHHHHH
Q 046900 359 -KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCH----CSEPGWFRVCFAN-----MSEQTLEVALK 428 (442)
Q Consensus 359 -~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~----~~~~~~iRls~~~-----~~~e~i~~~l~ 428 (442)
.+.+++++|++++.... +...+.+. ++++||.+.++.... ...+.++|+++.. +++++++++++
T Consensus 304 ~~~~~~~~v~v~~~~~~~-----~~~~~~~~-l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~ 377 (402)
T cd00378 304 SGGTDNHLVLVDLRPKGI-----TGKAAEDA-LEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIAD 377 (402)
T ss_pred ecCCCCeEEEEeCCccCC-----CHHHHHHH-HHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHH
Confidence 46788999999974211 13344444 466699998633211 1134679999854 35899999999
Q ss_pred HHHHHHHH
Q 046900 429 RIHNFMQK 436 (442)
Q Consensus 429 ~l~~~l~~ 436 (442)
.|++++.+
T Consensus 378 ~l~~~~~~ 385 (402)
T cd00378 378 FIARALKD 385 (402)
T ss_pred HHHHHHhc
Confidence 99997764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=224.04 Aligned_cols=322 Identities=16% Similarity=0.236 Sum_probs=215.0
Q ss_pred ccccc-CCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHH--HHHhh----cC--------CCCeEEEcC
Q 046900 87 ENALF-QDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANEL--LTFIL----AD--------PGDALLVPT 151 (442)
Q Consensus 87 ~~~~Y-~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~--~~~~l----~~--------~gd~Vl~~~ 151 (442)
+..+| +...|++++|+-+|+.++ +++++|++..+++-.+.. +..++ .. +.-+.|+|.
T Consensus 60 D~RNY~G~l~Gipe~r~l~a~llg--------v~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPv 131 (425)
T PF12897_consen 60 DCRNYPGGLDGIPEARELFAELLG--------VPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPV 131 (425)
T ss_dssp BTTSS-S-SS--HHHHHHHHHHHT--------S-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEE
T ss_pred cccCCCCccCChHHHHHHHHHHhC--------CCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecC
Confidence 45679 888999999999999987 789999888776544332 22222 11 123789999
Q ss_pred CCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCC--CCCCCcCCCHHHHHHHHHH-
Q 046900 152 PYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNP--SNPLGATIQRSVLEELLDF- 228 (442)
Q Consensus 152 p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P--~NPtG~~~~~~~l~~l~~~- 228 (442)
|+|.-+...++. .|++.++||++++| +|+|.+++.+.+ ++.+|.++.+ | +||||.+||.+..++++.+
T Consensus 132 PGYDRHFai~E~-~Giemi~VpM~~dG---PDmD~Ve~LV~~----D~svKGiWcV-P~ySNPtG~tySde~vrrlA~m~ 202 (425)
T PF12897_consen 132 PGYDRHFAITEH-FGIEMIPVPMTEDG---PDMDMVEELVAE----DPSVKGIWCV-PKYSNPTGITYSDEVVRRLAAMK 202 (425)
T ss_dssp S--HHHHHHHHH-CT-EEEEEEEETTE---E-HHHHHHHTHT----STTEEEEEE--SSS-TTT-----HHHHHHHHHS-
T ss_pred CCchHHHHHHHh-hCcEEEecCCCCCC---CCHHHHHHHHhc----CCccceEEeC-CCccCCCCccCCHHHHHHHhcCC
Confidence 999999999985 99999999999876 899999998864 4578876544 5 7999999999999999987
Q ss_pred HHhcCcEEEEeccCCcCCCC-CCC---cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc
Q 046900 229 ATRKNIHLVSDEIYSGSAFS-SSE---FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM 304 (442)
Q Consensus 229 ~~~~~~~vi~De~y~~~~~~-~~~---~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~ 304 (442)
+...++.|+-|++|.--.+. ..+ +..+...+.+. .++++++.+.|+||.. +||-+++++.++.+.+....+.+
T Consensus 203 ~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~A--Gnpdrv~~F~STSKIT-f~GaGva~~aaS~~Nl~~~~~~~ 279 (425)
T PF12897_consen 203 TAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKA--GNPDRVYVFASTSKIT-FPGAGVAFFAASEANLAWIKKHL 279 (425)
T ss_dssp -SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHT--T-TTSEEEEEESTTTS--TTSS-EEEEE-HHHHHHHHHHH
T ss_pred cCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHc--CCCCeEEEEecccccc-cCCcceeeeecCHHHHHHHHHHh
Confidence 34579999999999865552 211 23566666553 4679999999999987 69999999999655555444433
Q ss_pred ccc-CCCcHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHHHHHHhC-C-----CeeecCCceEEEEEecCCcccc
Q 046900 305 SSF-TLISSQTQYLLASMLSNKK-FTENYIKTNRERLQKRYQMIIEGLRSA-G-----IECLKGNAGLFCWMNLSPLLEE 376 (442)
Q Consensus 305 ~~~-~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-g-----~~~~~~~~g~~~~~~~~~~~~~ 376 (442)
... .+..-+.|..-..++.+.+ -+.+|+++.++.++-+.+.+.+.|++. | .+|..|.||||+++++.+.
T Consensus 280 ~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G--- 356 (425)
T PF12897_consen 280 SVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG--- 356 (425)
T ss_dssp HHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT---
T ss_pred cCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC---
Confidence 222 3456799999999999976 678999999999999999888888653 3 4788999999999998874
Q ss_pred cChhhHHHHHHHHHHcCcEEEeC-CCCCCCC---CCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 377 QTREGELALWDSMLHEVKLNISP-GSSCHCS---EPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 377 ~~~~~~~~l~~~l~~~~gi~v~p-g~~f~~~---~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
.+..+.+. .++.||.+.| |..|... .+..|||+.+.++.++++.+++.+.-+++-
T Consensus 357 ----~AkrvV~l-akeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~l 415 (425)
T PF12897_consen 357 ----TAKRVVEL-AKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVKL 415 (425)
T ss_dssp -----HHHHHHH-HHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHH-HHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 24555544 4666999998 7777542 246899999987899999999999877654
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=236.44 Aligned_cols=300 Identities=16% Similarity=0.136 Sum_probs=207.6
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH---hHhhhcC
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR---DLRWRTG 166 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~---~~~~~~G 166 (442)
.|.+.....++++.++++++ ++++++++|+++++..++.+++++||.|+++.|+|..+.. .+.. .|
T Consensus 27 ~~~~~~~~~~l~~~~a~~~g----------~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~~~~~~-~g 95 (338)
T cd06502 27 VYGEDPTTAKLEARAAELFG----------KEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAGAPEFL-SG 95 (338)
T ss_pred ccCCCHHHHHHHHHHHHHhC----------CCeEEEecCchHHHHHHHHHhcCCCCeEEEecCcceeeecCCcHHHH-cC
Confidence 45445566788888877763 4567788888899999999999999999999999876442 2343 79
Q ss_pred cEEEEEecCCCCCCcCCHHHHHHHHHHHHhc-CCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcC
Q 046900 167 IKIVPIHCDSSNNFQITPQALEAAYKEAESK-DMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGS 245 (442)
Q Consensus 167 ~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~-~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~ 245 (442)
++++.++.+. +.+|++.+++++++..+. ..++++|++++|+|| |.+++.+++++|+++|+++|+++|+||+|..+
T Consensus 96 ~~~~~v~~~~---~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~ 171 (338)
T cd06502 96 VKLLPVPGEN---GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLAN 171 (338)
T ss_pred ceEEeecCCC---CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHH
Confidence 9999998743 568999999998642110 136789999999998 66779999999999999999999999998643
Q ss_pred CCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc----cCCCcHHHHHHHHHH
Q 046900 246 AFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS----FTLISSQTQYLLASM 321 (442)
Q Consensus 246 ~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~----~~~~s~~~q~~~~~~ 321 (442)
...... .++..+... .. +++.|+||.||++| |+++..++.+.+.++.... .+..+++.+.++...
T Consensus 172 ~~~~~~-~~~~~~~~~------~d-~~~~s~sK~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 240 (338)
T cd06502 172 AAAALG-VALKTYKSG------VD-SVSFCLSKGGGAPV---GAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAA 240 (338)
T ss_pred HHHhcC-CCHHHHHhc------CC-EEEEeccccCCCcc---ceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHH
Confidence 211111 133333221 22 45789999999887 5544335666666654332 223456777777777
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHH--HcCcEEEeC
Q 046900 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSML--HEVKLNISP 399 (442)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~gi~v~p 399 (442)
|+...+ .+..+++.++++++.+.|++.|+.+.++.++ ++.+.++.... ....+.+.+. .+.|+.+.+
T Consensus 241 L~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~v~~~~~~~-----~~~~l~~~l~~~~~~gi~~~~ 309 (338)
T cd06502 241 LENDLW-----LRRLRHDHEMARRLAEALEELGGLESEVQTN-IVLLDPVEANA-----VFVELSKEAIERRGEGVLFYA 309 (338)
T ss_pred hcCchH-----HHHHHHHHHHHHHHHHHHHhcCCCcccccCC-eEEEecCCccH-----HHHHHHHHHHHhhhCCEEEEe
Confidence 776443 2344566677889999999888776666766 55556543110 1223333333 134999877
Q ss_pred CCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHH
Q 046900 400 GSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHN 432 (442)
Q Consensus 400 g~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~ 432 (442)
.. .+++|+++.. .++++++++++++++
T Consensus 310 ~~------~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 310 WG------EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred cC------CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 42 2689999972 278999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=242.79 Aligned_cols=339 Identities=15% Similarity=0.158 Sum_probs=224.9
Q ss_pred CCCCCceeeeeccc--ccccH--HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLAE--NQVSF--DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~~--n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+|||..+. +.+++ +.+.+.+.+...... .....| ..++++++++++.+..+
T Consensus 35 d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~--------~~~~~~-----~~~~~~~la~~l~~~~~------ 95 (396)
T PRK02627 35 DDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLI--------HTSNLY-----YIEPQEELAEKLVELSG------ 95 (396)
T ss_pred eCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhcc--------cccccc-----CCHHHHHHHHHHHhhcC------
Confidence 44566789987653 34433 555555554432110 001122 36888889998887533
Q ss_pred CCcEEEecChHHHHHHHHHhhcCCC-------CeEEEcCCCCcChHHhHhhhcCcEEEE---EecCCCCCC----cCCHH
Q 046900 120 LNRIVVTAGATAANELLTFILADPG-------DALLVPTPYYPGFDRDLRWRTGIKIVP---IHCDSSNNF----QITPQ 185 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~~g-------d~Vl~~~p~y~~~~~~~~~~~G~~v~~---v~~~~~~~~----~~d~~ 185 (442)
.+++++|+|+++++.++++++...+ +.|++..++|.++........+..... .++. .++ ..|++
T Consensus 96 ~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~ 173 (396)
T PRK02627 96 MDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLV--EGFIYVPFNDIE 173 (396)
T ss_pred CCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCC--CCceEeCCCCHH
Confidence 5899999999999999998765433 679999999988765443212222111 1111 111 12789
Q ss_pred HHHHHHHHHHhcCCceeEEEEeCCCCCCC-cCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcC
Q 046900 186 ALEAAYKEAESKDMRVRGVLITNPSNPLG-ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQY 264 (442)
Q Consensus 186 ~l~~~l~~~~~~~~~~~~v~l~~P~NPtG-~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~ 264 (442)
.+++.+.+ ++++|++++++||+| .+++.+.+++|.++|++|++++|+||+|.++.+.+. +.+......
T Consensus 174 ~l~~~i~~------~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~-~~~~~~~~~---- 242 (396)
T PRK02627 174 ALKAAITD------KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK-LFAYQHYGI---- 242 (396)
T ss_pred HHHHhcCC------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc-eeeehhcCC----
Confidence 99988743 788999988899999 688999999999999999999999999998766553 222211111
Q ss_pred CCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 046900 265 KDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKR 342 (442)
Q Consensus 265 ~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 342 (442)
... +.||||.++ +|+|+||++++ +.+.+.+.. ....+..+++.|.++.+.++.... +++.++.++.....
T Consensus 243 --~pd---i~t~sK~~~-~G~rig~~~~~-~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~~ 314 (396)
T PRK02627 243 --EPD---IMTLAKGLG-GGVPIGAVLAK-EKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEE-EGLLENAAEVGEYL 314 (396)
T ss_pred --CCC---EEEEcchhh-CCcccEEEEEc-HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHH
Confidence 122 347999999 99999999995 556666543 233456788999998888864321 22233333333333
Q ss_pred HHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHH
Q 046900 343 YQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQ 421 (442)
Q Consensus 343 ~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e 421 (442)
++.+.+.+.+.+........|+++|++++. +..+++..|+++ ||.+.|+. .+++|++++ ..+++
T Consensus 315 ~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--------~~~~~~~~l~~~-Gv~v~~~~------~~~lRi~~~~~~~~~ 379 (396)
T PRK02627 315 RAKLRELLEKYPGIKEVRGLGLMIGIELDR--------PAAEIVKKALEK-GLLINVTG------DNVLRLLPPLIISKE 379 (396)
T ss_pred HHHHHHHHHhCCCeeeeccCcEEEEEEecC--------cHHHHHHHHHHC-CeEEeecC------CCEEEEECCcccCHH
Confidence 344444443332211223356789998832 257889999888 99999863 367999875 44899
Q ss_pred HHHHHHHHHHHHHHHH
Q 046900 422 TLEVALKRIHNFMQKR 437 (442)
Q Consensus 422 ~i~~~l~~l~~~l~~~ 437 (442)
++++++++|.+++++.
T Consensus 380 ~i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 380 EIDEAVDRLEEVLKEL 395 (396)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999988653
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-28 Score=234.31 Aligned_cols=300 Identities=15% Similarity=0.189 Sum_probs=207.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD 175 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~ 175 (442)
-+.++++++|++++ + +++++|+|+++++..++.+++++||.|+++.++|......++. .|++++.++.+
T Consensus 45 ~~~~l~~~la~~~g--------~--~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~-~g~~~~~v~~~ 113 (361)
T cd06452 45 PIKDFHHDLAEFLG--------M--DEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSYVAAER-AGLNVREVPNT 113 (361)
T ss_pred hHHHHHHHHHHHcC--------C--ceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHHHHHHh-cCCEEEEEecC
Confidence 35788999999875 3 7899999999999999999999999999999988777666774 89999999998
Q ss_pred CCCCCcCCHHHHHHHHHHHHhc-CCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc
Q 046900 176 SSNNFQITPQALEAAYKEAESK-DMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 176 ~~~~~~~d~~~l~~~l~~~~~~-~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s 254 (442)
.++.|.+|++.+++++++..+. +.+++++++++|+||||.+.+ +++|+++|+++++++|+|++|+.. .. ..+
T Consensus 114 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g---~~-~~~ 186 (361)
T cd06452 114 GHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD---AKKIAKVCHEYGVPLLLNGAYTVG---RM-PVS 186 (361)
T ss_pred CCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc---HHHHHHHHHHcCCeEEEECCcccC---Cc-CCC
Confidence 7656889999999998753211 236789999999999998866 778888899999999999999842 11 122
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcH----------HHHHHHHHHhcC
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISS----------QTQYLLASMLSN 324 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~----------~~q~~~~~~l~~ 324 (442)
...+ +..++++|+||.++ ++.|+||++++ +.+.+.+.+...++.++. ..+.++.+.+.
T Consensus 187 ~~~~---------~~d~~~~s~~K~l~-~~~~~G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~- 254 (361)
T cd06452 187 GKEL---------GADFIVGSGHKSMA-ASAPIGVLATT-EEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFP- 254 (361)
T ss_pred HHHc---------CCCEEEecCCcccc-CCCCeEEEEEC-HHHHHHHhccccccccceeeeeccccCchHHHHHHHHHH-
Confidence 2222 34588999999997 66699999995 555555554333221111 11222222222
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec--CCceEEEEEecCCcccc--cChhhHHHHHHHHHHcCcEEEeC
Q 046900 325 KKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK--GNAGLFCWMNLSPLLEE--QTREGELALWDSMLHEVKLNISP 399 (442)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~gi~v~p 399 (442)
+..++++...+. .++++++.+.|+++ |+++.. +....++.++.+..... .......++.+.|+++ ||.+.+
T Consensus 255 --~~~~~~~~~~~~-~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gI~~~~ 330 (361)
T cd06452 255 --HVKERVKRWDEE-VEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKR-GIHGIK 330 (361)
T ss_pred --HHHHHHHHHHHH-HHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHc-CceEEc
Confidence 222333333333 33457888999988 888762 22333566666521100 0001234688888776 998532
Q ss_pred CCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 400 GSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 400 g~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
. ....++|++....++++++.+++.|+++.
T Consensus 331 ----~-~~~~~~ri~~~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 331 ----P-GLTRYFKLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred ----C-CCceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 1 23458999983337899999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-28 Score=238.67 Aligned_cols=304 Identities=16% Similarity=0.152 Sum_probs=211.6
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhhcCcE
Q 046900 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTGIK 168 (442)
Q Consensus 91 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~G~~ 168 (442)
|+....+.+|++++|++++ .++.|++++|+ +++..++..+.. +||.|+++.+.|..+...++. .|++
T Consensus 87 ~~~~~~~~~Le~~la~~~g---------~~~~i~~~sG~-~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~-~g~~ 155 (410)
T PRK13392 87 SGTSHPHVLLERELADLHG---------KESALLFTSGY-VSNDAALSTLGKLLPGCVILSDALNHASMIEGIRR-SGAE 155 (410)
T ss_pred ccChHHHHHHHHHHHHHhC---------CCCEEEECcHH-HHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHH-cCCe
Confidence 3333346788888888875 24667777774 666666666643 889888887788777777774 8988
Q ss_pred EEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCC
Q 046900 169 IVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS 248 (442)
Q Consensus 169 v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~ 248 (442)
+..++.+ |.+.+++.++... ..++++|++++|+||||.+++ +++|.++|+++++++|+||+|+...++
T Consensus 156 ~~~~~~~-------d~~~l~~~l~~~~--~~~t~~v~i~~~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g 223 (410)
T PRK13392 156 KQVFRHN-------DLADLEEQLASVD--PDRPKLIAFESVYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYG 223 (410)
T ss_pred EEEEeCC-------CHHHHHHHHHhcc--CCCCEEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcC
Confidence 7776532 5566777665421 236789999999999999998 778888888999999999999954443
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc----CCCcHHHHHHHHHHhcC
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF----TLISSQTQYLLASMLSN 324 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~ 324 (442)
.. ...+.....- .....++++||||+||++| ||+++ ++.+.+.+++.... ...+++.+.++.+.|+.
T Consensus 224 ~~-g~g~~~~~~~----~~~~div~~tlsK~~g~~G---G~~~~-~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~ 294 (410)
T PRK13392 224 AR-GGGIAERDGL----MDRIDMIQGTLAKAFGCLG---GYIAA-SADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRH 294 (410)
T ss_pred CC-CCchhhhccC----CCCCcEEEEEChHhhhccc---chhhc-CHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHH
Confidence 22 1222211110 0122377899999999888 99988 56677666654432 22445677777777764
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCC
Q 046900 325 KKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCH 404 (442)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~ 404 (442)
... ....++.++++++++.+.|++.|+++.+++++++ .+.++.. ....+++++|++++||.+.++....
T Consensus 295 ~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~-~i~~~~~------~~~~~~~~~L~~~~GI~v~~~~~p~ 363 (410)
T PRK13392 295 LKT----SQTERDAHQDRVAALKAKLNANGIPVMPSPSHIV-PVMVGDP------TLCKAISDRLMSEHGIYIQPINYPT 363 (410)
T ss_pred Hhc----CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCEE-EEEeCCH------HHHHHHHHHHHHhCCEEEeeeCCCC
Confidence 221 2345677889999999999998988877777754 3333321 1356788888866699999865432
Q ss_pred C-CCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 405 C-SEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 405 ~-~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
. .+..++||++. ..++++++++++.|.+++++.
T Consensus 364 ~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 364 VPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 2 23468999985 228999999999999987653
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=233.14 Aligned_cols=330 Identities=14% Similarity=0.143 Sum_probs=214.1
Q ss_pred CCCceeeeecc--cccccH--HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 46 NPSGVIQMGLA--ENQVSF--DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 46 ~~~~~i~l~~~--~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
....+|||..+ .|++++ +.+.+.+.+...... .....|+ .+.++.+++.+.+.++ .+
T Consensus 25 ~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--------~~~~~~~-----~~~~~~l~~~la~~~g------~~ 85 (379)
T TIGR00707 25 NGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLV--------HVSNLYY-----TEPQEELAEKLVEHSG------AD 85 (379)
T ss_pred CCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhcc--------ccccccC-----CHHHHHHHHHHHhhCC------CC
Confidence 34578899875 455543 455544443322100 0011232 2344455555554433 35
Q ss_pred cEEEecChHHHHHHHHHhhc---C----CCCeEEEcCCCCcChHHhHhhhcCcEEE----EEecCCCCCCcC--CHHHHH
Q 046900 122 RIVVTAGATAANELLTFILA---D----PGDALLVPTPYYPGFDRDLRWRTGIKIV----PIHCDSSNNFQI--TPQALE 188 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~---~----~gd~Vl~~~p~y~~~~~~~~~~~G~~v~----~v~~~~~~~~~~--d~~~l~ 188 (442)
++++++|+++++..+++++. . ++|.|++++|+|..+...+.. .+.... ..++..+..+.. |++.++
T Consensus 86 ~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 164 (379)
T TIGR00707 86 RVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALS-ATGQPKYQKGFEPLVPGFSYAPYNDIESLK 164 (379)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHH-hcCChhhhccCCCCCCCceeeCCCCHHHHH
Confidence 99999999999999887652 2 379999999999988766553 343321 122222111111 789999
Q ss_pred HHHHHHHhcCCceeEEEEeCCCCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCC
Q 046900 189 AAYKEAESKDMRVRGVLITNPSNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDS 267 (442)
Q Consensus 189 ~~l~~~~~~~~~~~~v~l~~P~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~ 267 (442)
+.+.+ ++++|+++.++||+|.. ++.+++++|.++|+++++++|+||+|.++.+.+. +.+.... . ..
T Consensus 165 ~~~~~------~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~-~~~~~~~-~-----~~ 231 (379)
T TIGR00707 165 KAIDD------ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK-FFAYEHY-G-----IE 231 (379)
T ss_pred HHhhh------CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hhhHHhc-C-----CC
Confidence 98865 67888886556777764 6899999999999999999999999998765443 1121111 1 11
Q ss_pred CcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc--cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 046900 268 ERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM--SSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQM 345 (442)
Q Consensus 268 ~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (442)
.++ .+|||.++ +|+|+||+++ ++.+.+.+... ...+..++++|.++.+.|+... . .+.++.++++++.
T Consensus 232 ~d~---~t~sK~~~-~G~riG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~---~--~~~~~~~~~~~~~ 301 (379)
T TIGR00707 232 PDI---ITLAKGLG-GGVPIGATLA-KEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIE---K--ERLLENVKEKGDY 301 (379)
T ss_pred CCE---EEEccccc-CCcccEEEEE-cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH---h--hhHHHHHHHHHHH
Confidence 233 37899999 9999999999 46666666542 2335578889999887775211 1 1234455556666
Q ss_pred HHHHHHhC----CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCH
Q 046900 346 IIEGLRSA----GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSE 420 (442)
Q Consensus 346 l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~ 420 (442)
+.+.|.+. ++... +..|+++|++++. +..++.+.|.++ ||.+.|+. .+++|++++ ..++
T Consensus 302 ~~~~l~~~~~~~~~~~~-~~~g~~~~~~~~~--------~~~~~~~~l~~~-Gv~v~~~~------~~~lRi~~~~~~t~ 365 (379)
T TIGR00707 302 FKERLEELGKNYPNKEV-RGKGLMLGIELEA--------PCKDIVKKALEK-GLLVNCAG------PKVLRFLPPLIITK 365 (379)
T ss_pred HHHHHHHHHhhCCCCcc-ccCceEEEEEecC--------cHHHHHHHHHHC-CcEEeeCC------CCEEEEECCCcCCH
Confidence 66666543 32212 2357788988764 146778887665 99999842 368999975 2489
Q ss_pred HHHHHHHHHHHHHH
Q 046900 421 QTLEVALKRIHNFM 434 (442)
Q Consensus 421 e~i~~~l~~l~~~l 434 (442)
+++++++++|++++
T Consensus 366 ~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 366 EEIDEAVSALEEAI 379 (379)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998763
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-27 Score=228.69 Aligned_cols=295 Identities=18% Similarity=0.190 Sum_probs=204.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS 176 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~ 176 (442)
..++++.++++++ . ++ .++++++++++..++.+++++||.|+++.|+|+.+...+.. .|++++.++.
T Consensus 48 ~~~l~~~la~~~~--------~-~~-~iv~~sg~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~g~~~~~~~~-- 114 (349)
T cd06454 48 HEELEEELAEFHG--------K-EA-ALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIRL-SGAKKRIFKH-- 114 (349)
T ss_pred HHHHHHHHHHHhC--------C-CC-EEEeccHHHHHHHHHHHhcCCCCEEEEehhhhHHHHHHHHH-cCCceEEecC--
Confidence 3555666665543 2 23 45555567788888888899999999999999998888874 8999888752
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHH
Q 046900 177 SNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIA 256 (442)
Q Consensus 177 ~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~ 256 (442)
+|++.+++.+++.. +..+++++++++|+||||...+ +++|+++|+++|+++|+|++|+...+... .....
T Consensus 115 -----~~~~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~-~~~~~ 184 (349)
T cd06454 115 -----NDMEDLEKLLREAR-RPYGKKLIVTEGVYSMDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGPH-GRGVE 184 (349)
T ss_pred -----CCHHHHHHHHHHhh-ccCCCeEEEEeccccCCCCccC---HHHHHHHHHHcCCEEEEEccccccccCCC-CCChh
Confidence 47788998887532 1235678888899999999877 77888999999999999999975333211 11111
Q ss_pred HHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc-c---CCCcHHHHHHHHHHhcCchhHHHHH
Q 046900 257 EILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS-F---TLISSQTQYLLASMLSNKKFTENYI 332 (442)
Q Consensus 257 ~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~-~---~~~s~~~q~~~~~~l~~~~~~~~~~ 332 (442)
.... ...+.+++++|+||.++.+| ||++++ +.+.+.+..... + +..+++.+.++.+.++.. .+ .
T Consensus 185 ~~~~----~~~~~~i~~~s~sK~~~~~g---G~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~-~ 252 (349)
T cd06454 185 EFGG----LTDDVDIIMGTLGKAFGAVG---GYIAGS-KELIDYLRSYARGFIFSTSLPPAVAAAALAALEVL---QG-G 252 (349)
T ss_pred hhcc----ccccCcEEEeechhhhcccC---CEEECC-HHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHH---hc-C
Confidence 1111 11366788999999998655 999884 555544443221 2 234555555555555422 11 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC-CCCCEE
Q 046900 333 KTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC-SEPGWF 411 (442)
Q Consensus 333 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~-~~~~~i 411 (442)
+..+++++++++.+.+.|.+.|+++..+.++++.++.++.. .+..++++.|+++ ||.+.++..... ...+++
T Consensus 253 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~L~~~-gI~~~~~~~~~~~~~~~~i 325 (349)
T cd06454 253 PERRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDP------AKAVAFSDALLER-GIYVQAIRYPTVPRGTARL 325 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcEEEEeCCCh------HHHHHHHHHHHhC-CceEEEecCCccCCCCCeE
Confidence 45678888999999999998888877665666666544421 1357888898887 999998643211 124789
Q ss_pred EEEeec-CCHHHHHHHHHHHHHH
Q 046900 412 RVCFAN-MSEQTLEVALKRIHNF 433 (442)
Q Consensus 412 Rls~~~-~~~e~i~~~l~~l~~~ 433 (442)
|++++. .+++++++++++|+++
T Consensus 326 Ri~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 326 RISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHh
Confidence 999973 4899999999999864
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=226.41 Aligned_cols=293 Identities=16% Similarity=0.200 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHHHhCCCCccCC-CcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcC--hHHhHhhhcCcEEEEEec
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDL-NRIVVTAGATAANELLTFILADPGDALLVPTPYYPG--FDRDLRWRTGIKIVPIHC 174 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~-~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~--~~~~~~~~~G~~v~~v~~ 174 (442)
.++++.++++++ +++ +.+++++|+++++..++.+++.+||.|+++.++|+. +...++ ..|++++.+|.
T Consensus 35 ~~~~~~la~~~g--------~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~-~~g~~~~~v~~ 105 (356)
T cd06451 35 DEILEGLRYVFQ--------TENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAE-RYGADVDVVEK 105 (356)
T ss_pred HHHHHHHHHHhc--------CCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHHHHHHHH-HhCCCeEEeec
Confidence 355555555554 434 457888889999999999999999999999988765 445566 48999999998
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s 254 (442)
++ .+.+|++.+++.+++ .+++++++++|+||||.+++ +++|.++|+++|+++++|++|+ ++.. ..+
T Consensus 106 ~~--~~~~~~~~l~~~i~~-----~~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D~~~~---~g~~-~~~ 171 (356)
T cd06451 106 PW--GEAVSPEEIAEALEQ-----HDIKAVTLTHNETSTGVLNP---LEGIGALAKKHDALLIVDAVSS---LGGE-PFR 171 (356)
T ss_pred CC--CCCCCHHHHHHHHhc-----cCCCEEEEeccCCCcccccC---HHHHHHHHHhcCCEEEEeeehh---ccCc-ccc
Confidence 75 357899999999864 26789999999999999998 6667888889999999999986 2221 122
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH----cc----------------cc-CCCcHH
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR----MS----------------SF-TLISSQ 313 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~----~~----------------~~-~~~s~~ 313 (442)
+... +..+++.|++|.++.| .++||++.++ .+.+.+.. .. .. ++.+..
T Consensus 172 ~~~~---------~~d~~~~s~~K~l~~p-~g~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 240 (356)
T cd06451 172 MDEW---------GVDVAYTGSQKALGAP-PGLGPIAFSE-RALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVN 240 (356)
T ss_pred cccc---------CccEEEecCchhccCC-CCcceeEECH-HHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHH
Confidence 2111 2235677899999844 4689999954 44444432 00 01 122333
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC---ceEEEEEecCCcccccChhhHHHHHHHHH
Q 046900 314 TQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN---AGLFCWMNLSPLLEEQTREGELALWDSML 390 (442)
Q Consensus 314 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~l~~~l~ 390 (442)
.+.++.+.++. .....++...++++++++++.+.|.+.|+++..+. ++.++|+.++... +..++++.|.
T Consensus 241 ~~~a~~aal~~--l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~ 312 (356)
T cd06451 241 LLYALREALDL--ILEEGLENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPEGV------DGDEVVRRLM 312 (356)
T ss_pred HHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCCCC------CHHHHHHHHH
Confidence 34444444432 11233566778888899999999998888776432 4556677776432 2567888887
Q ss_pred HcCcEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHHH
Q 046900 391 HEVKLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNFM 434 (442)
Q Consensus 391 ~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l 434 (442)
+++||.+.+|..+. .++++|++++. .+++++++++++|++++
T Consensus 313 ~~~gI~~~~g~~~~--~~~~iRis~~~~~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 313 KRYNIEIAGGLGPT--AGKVFRIGHMGEATREDVLGVLSALEEAL 355 (356)
T ss_pred HhCCEEEecccccc--cCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 76699999987532 34699999962 27999999999999876
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=234.53 Aligned_cols=297 Identities=15% Similarity=0.175 Sum_probs=211.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc----CCCCeEEEcCCCCcChHH---hHhhhcCcEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA----DPGDALLVPTPYYPGFDR---DLRWRTGIKI 169 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~----~~gd~Vl~~~p~y~~~~~---~~~~~~G~~v 169 (442)
+.++|+.+|++++ +++++|++|+|+++++..++.+++ ++||.|+++...|+.+.. .++ ..|+++
T Consensus 45 ~~~~r~~la~~~g--------~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~-~~g~~v 115 (381)
T PRK02948 45 LQVCRKTFAEMIG--------GEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLE-SQGYTV 115 (381)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHH-hCCCEE
Confidence 4566777777764 578899999999999999888775 578999999977766544 345 379999
Q ss_pred EEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC
Q 046900 170 VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS 249 (442)
Q Consensus 170 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~ 249 (442)
..+++++ ++.+|++.|++.+++ ++++|++++|+||||.+++ +++|.++|+++|+++++|+++. ++.
T Consensus 116 ~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~vivD~~~~---~g~ 181 (381)
T PRK02948 116 TEIPVDK--SGLIRLVDLERAITP------DTVLASIQHANSEIGTIQP---IAEIGALLKKYNVLFHSDCVQT---FGK 181 (381)
T ss_pred EEEeeCC--CCCCCHHHHHHhcCC------CCEEEEEECCcCCcEeehh---HHHHHHHHHHcCCEEEEEChhh---ccc
Confidence 9999874 356899999998864 6789999999999999998 6678888889999999998765 222
Q ss_pred CCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHH-HHHHHH-----HccccCCCcHHHHHHHHHHhc
Q 046900 250 SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDK-VVTTAR-----RMSSFTLISSQTQYLLASMLS 323 (442)
Q Consensus 250 ~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~-~~~~~~-----~~~~~~~~s~~~q~~~~~~l~ 323 (442)
. ...+.. .+..+++.|+||.+|.+| +|+++++++. +..... ....+++.+.+.+.++.++++
T Consensus 182 ~-~~~~~~---------~~~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~ 249 (381)
T PRK02948 182 L-PIDVFE---------MGIDSLSVSAHKIYGPKG--VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAE 249 (381)
T ss_pred c-ccCccc---------CCCCEEEecHHhcCCCCc--EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHH
Confidence 1 111111 245577899999999888 7998875432 111100 001235677788888877776
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEE-----EecCCcccccChhhHHHHHHHHHHcCcEEEe
Q 046900 324 NKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCW-----MNLSPLLEEQTREGELALWDSMLHEVKLNIS 398 (442)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~ 398 (442)
. ..+++++.++++++.++++.+.|++.|+++.......+.. +.++.. +..++...|. ++||.++
T Consensus 250 ~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~l~-~~gI~v~ 318 (381)
T PRK02948 250 N---ILKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKGI-------EGQYTMLECN-RRGIAIS 318 (381)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeCCC-------CHHHHHHhcc-cCCEEEE
Confidence 3 2345777889999999999999998887665432111211 122211 2455666664 4599999
Q ss_pred CCCCCCC-----------------CCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHHHh
Q 046900 399 PGSSCHC-----------------SEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 399 pg~~f~~-----------------~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
+|+.+.. ...+++|+|++. .++++++++++.|+++++++-+
T Consensus 319 ~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 377 (381)
T PRK02948 319 TGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQFYR 377 (381)
T ss_pred chHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9885321 013689999982 2799999999999999876543
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=227.65 Aligned_cols=294 Identities=18% Similarity=0.226 Sum_probs=208.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCccC-CCcEEEecChHHHHHHHHHhh----cCCCCeEEEcCCCCcChH----HhHhhhcC
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFD-LNRIVVTAGATAANELLTFIL----ADPGDALLVPTPYYPGFD----RDLRWRTG 166 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~-~~~i~~t~G~~~ai~~~~~~l----~~~gd~Vl~~~p~y~~~~----~~~~~~~G 166 (442)
.+.++|+.++++++ ++ +++|++|+|+++++.+++.++ .++||.|+++++.|+... ..+. ..|
T Consensus 63 ~~~~~r~~ia~~~~--------~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~~g 133 (403)
T TIGR01979 63 AYEAVREKVAKFIN--------AASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAE-RTG 133 (403)
T ss_pred HHHHHHHHHHHHhC--------cCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHH-hcC
Confidence 46789999999876 44 679999999999999998875 578999999999887633 3444 379
Q ss_pred cEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 167 IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 167 ~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
++++.+++++ ++.+|++.+++.+.+ +++++++++|+||||.+++ +++|.++|+++|+++|+|++|+...
T Consensus 134 ~~~~~v~~~~--~~~~~~~~l~~~i~~------~~~lv~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~ 202 (403)
T TIGR01979 134 ATLKFIPLDD--DGTLDLDDLEKLLTE------KTKLVAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVPH 202 (403)
T ss_pred cEEEEEecCC--CCCCCHHHHHHHhcc------CCeEEEEEcccccccccCC---HHHHHHHHHHcCCEEEEEchhhcCc
Confidence 9999999874 356899999998865 7899999999999999999 6788888999999999999997422
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc---------------------
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS--------------------- 305 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~--------------------- 305 (442)
...++... +..+++.|++|.+|.+| +||++++ +.+.+.+....
T Consensus 203 ----~~~~~~~~---------~~d~~~~s~~K~~gp~G--~g~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 266 (403)
T TIGR01979 203 ----MPVDVQAL---------DCDFYVFSGHKMYGPTG--IGVLYGK-EELLEQMPPFLGGGEMIAEVSFEETTYNEAPH 266 (403)
T ss_pred ----cccCcccc---------CCCEEEEecccccCCCC--ceEEEEc-hHHHhcCCCeecCCCceeecccCccccCCChh
Confidence 11222211 34578899999998666 8999885 44443332110
Q ss_pred c--cCCCcHHHHHHHHHHhcCchhHHH-HHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC-----ceEEEEEecCCcccc
Q 046900 306 S--FTLISSQTQYLLASMLSNKKFTEN-YIKTNRERLQKRYQMIIEGLRSA-GIECLKGN-----AGLFCWMNLSPLLEE 376 (442)
Q Consensus 306 ~--~~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-----~g~~~~~~~~~~~~~ 376 (442)
. .+..+.....++.+.++ ++.+ ..+..+++..+.++.+.+.|++. |+++..|. ++ ++.+.++..
T Consensus 267 ~~~~gt~~~~~~~al~~al~---~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~-~v~~~~~~~--- 339 (403)
T TIGR01979 267 KFEAGTPNIAGVIGLGAAID---YLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGG-IISFNVEGV--- 339 (403)
T ss_pred hcCCCCccHHHHHHHHHHHH---HHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCc-eEEEEeCCc---
Confidence 0 01223334444444443 2121 24556777888888898988876 78877643 45 444556542
Q ss_pred cChhhHHHHHHHHHHcCcEEEeCCCCCCC------CCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHH
Q 046900 377 QTREGELALWDSMLHEVKLNISPGSSCHC------SEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 377 ~~~~~~~~l~~~l~~~~gi~v~pg~~f~~------~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~ 437 (442)
+..++.+.| +++||.+.+|..+.. ..++++|||++. .++++++++++.|+++++.+
T Consensus 340 ----~~~~~~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 340 ----HPHDVGTIL-DEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred ----CHHHHHHHH-hhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 134566655 455999998764311 125789999972 27899999999999877653
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-26 Score=225.76 Aligned_cols=226 Identities=20% Similarity=0.303 Sum_probs=171.9
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---h
Q 046900 88 NALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---R 164 (442)
Q Consensus 88 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~ 164 (442)
..+|+.+ -...|++++|++.+ .+++++++|+++++..++.+++++||+|+++.|+|+.+...+.. .
T Consensus 77 y~R~~~P-t~~~Le~~lA~leg----------~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~ 145 (427)
T PRK07049 77 YSRFNHP-NSEIVEDRLAVYEG----------AESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRN 145 (427)
T ss_pred ccCCCCc-CHHHHHHHHHHHhC----------CCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHh
Confidence 3567665 35899999999874 45788899999999999999999999999999999999765421 3
Q ss_pred cCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHh---cCcEEEEecc
Q 046900 165 TGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATR---KNIHLVSDEI 241 (442)
Q Consensus 165 ~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~---~~~~vi~De~ 241 (442)
.|++++.++.. .|++.+++.+.+... ..++|+|++++|+||||.+++.+++.+|++.|+. +++++|+||+
T Consensus 146 ~Gi~~v~~~~~------~d~~~l~~~l~~~~~-~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDet 218 (427)
T PRK07049 146 FGVGAVGFADG------LSEAAIGAAAEAAAA-KGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNT 218 (427)
T ss_pred cCcEEEEEeCC------CCHHHHHHHHHhhcc-CCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECC
Confidence 79988777621 467888877754311 1368999999999999999999999999998654 6899999999
Q ss_pred CCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHH
Q 046900 242 YSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLL 318 (442)
Q Consensus 242 y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~ 318 (442)
|....+. .++ . .+..++++|+||.+| .+|+|+||+++ ++.+.+.++..... ..++++.|.++
T Consensus 219 y~~~~~~----~pl-~---------~g~divv~S~SK~~gG~~glr~G~vv~-~~~l~~~l~~~~~~~g~~ls~~~a~l~ 283 (427)
T PRK07049 219 LLGPVFQ----KPL-E---------HGADLSVYSLTKYVGGHSDLVAGAVLG-RKALIRQVRALRSAIGTQLDPHSCWML 283 (427)
T ss_pred ccccccC----Ccc-c---------cCCCEEEEcCceeecCCCCcEEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 8754321 111 1 134588899999998 69999999998 45666666554443 34778888888
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 319 ASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
...++. +....++..++++.+.+.|+++
T Consensus 284 ~r~L~t-------l~~R~~~~~~~a~~la~~L~~~ 311 (427)
T PRK07049 284 GRSLET-------LVLRMERANRNARAVAEFLRDH 311 (427)
T ss_pred HcCCCh-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 777753 2333455588899999999886
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=229.04 Aligned_cols=297 Identities=16% Similarity=0.207 Sum_probs=210.8
Q ss_pred chHHHHHHHHHHHHHHhCCCCccC-CCcEEEecChHHHHHHHHHh----hcCCCCeEEEcCCCCcCh----HHhHhhhcC
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFD-LNRIVVTAGATAANELLTFI----LADPGDALLVPTPYYPGF----DRDLRWRTG 166 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~-~~~i~~t~G~~~ai~~~~~~----l~~~gd~Vl~~~p~y~~~----~~~~~~~~G 166 (442)
.+.++|+++|++++ ++ +++|++|+|+++++..++.+ .+++||+|+++.+.|+.. ...++ ..|
T Consensus 77 ~~~~~r~~la~~~~--------~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~-~~g 147 (424)
T PLN02855 77 AYELARKKVAAFIN--------ASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQ-KTG 147 (424)
T ss_pred HHHHHHHHHHHHcC--------CCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHH-HcC
Confidence 35688999999876 33 57999999999999999876 367899999999988753 33445 379
Q ss_pred cEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 167 IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 167 ~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
++++.++++.++ .+|++.+++.+++ ++++|++++|+||||.+++ +++|+++|+++|+++++|++|+.
T Consensus 148 ~~v~~v~~~~~~--~~~~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~a~~~-- 214 (424)
T PLN02855 148 AVLKFVGLTPDE--VLDVEQLKELLSE------KTKLVATHHVSNVLGSILP---VEDIVHWAHAVGAKVLVDACQSV-- 214 (424)
T ss_pred CEEEEEecCCCC--CcCHHHHHHHhcc------CceEEEEeCccccccccCC---HHHHHHHHHHcCCEEEEEhhhhc--
Confidence 999999987543 4889999999865 7899999999999999999 66788889999999999999963
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc---------------------
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS--------------------- 305 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~--------------------- 305 (442)
+.....+..+ +..+++.|++|.+|.+| +||+++++ .+.+.+....
T Consensus 215 --g~~~~~~~~~---------~~d~~~~s~~K~~gp~G--~G~l~~~~-~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~ 280 (424)
T PLN02855 215 --PHMPVDVQTL---------GADFLVASSHKMCGPTG--IGFLWGKS-DLLESMPPFLGGGEMISDVFLDHSTYAPPPS 280 (424)
T ss_pred --CCcCCCchhc---------CCCEEEeecccccCCCc--cEEEEEch-hhhhcCCCEecCCCceeeeecCccccCCChh
Confidence 2112222222 23367899999887555 89999854 4433332110
Q ss_pred --ccCCCcHHHHHHHHHHhcCchhH-HHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC------ceEEEEEecCCccc
Q 046900 306 --SFTLISSQTQYLLASMLSNKKFT-ENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGN------AGLFCWMNLSPLLE 375 (442)
Q Consensus 306 --~~~~~s~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~------~g~~~~~~~~~~~~ 375 (442)
..++.+.....++.++++ ++ +..+++.+++.++.++++.+.|++. |+++..+. .+.++.+.++..
T Consensus 281 r~e~GT~~~~~~~~l~~al~---~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~-- 355 (424)
T PLN02855 281 RFEAGTPAIGEAIGLGAAID---YLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGI-- 355 (424)
T ss_pred hccCCChHHHHHHHHHHHHH---HHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCc--
Confidence 011122233333334443 21 1235666777888888899998876 77776432 123555666542
Q ss_pred ccChhhHHHHHHHHHHcCcEEEeCCCCCCC------CCCCEEEEEee--cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 376 EQTREGELALWDSMLHEVKLNISPGSSCHC------SEPGWFRVCFA--NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 376 ~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~------~~~~~iRls~~--~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
...++.+.|.+++||.++.|..+.. ..++++|+|+. + +++|++++++.|+++++.++.
T Consensus 356 -----~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~yn-t~~di~~l~~~l~~~~~~~~~ 421 (424)
T PLN02855 356 -----HPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYN-TKEEVDAFIHALKDTIAFFSS 421 (424)
T ss_pred -----CHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 2456777776666999998875421 12468999996 4 899999999999999987654
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-26 Score=220.32 Aligned_cols=294 Identities=17% Similarity=0.196 Sum_probs=208.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCC--cEEEecChHHHHHHHHHhhcCCCCeEEEcCCC-CcC-hHHhHhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLN--RIVVTAGATAANELLTFILADPGDALLVPTPY-YPG-FDRDLRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~--~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~-y~~-~~~~~~~~~G~~v~~v 172 (442)
...+|+.++++++ ++++ .|++++|+++++..++.+++.++|.|++..+. |+. +...++ ..|++++.+
T Consensus 33 ~~~~~~~la~~~~--------~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~-~~g~~~~~i 103 (355)
T TIGR03301 33 TDQVRDRLLALAG--------GDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICE-YLGIPHTDL 103 (355)
T ss_pred HHHHHHHHHHHhc--------CCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhHHHHHHH-HcCCceEEE
Confidence 4677777777765 3443 68889999999999999998888887766555 443 445566 489999999
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+.+. ++.+|++.+++.+++ ..+++++++++|+||||.+.+ +++|+++|++|++++|+|++++. +.. .
T Consensus 104 ~~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~livD~~~s~---g~~-~ 170 (355)
T TIGR03301 104 NFSE--YEPPDLNRIEEALAA----DPDITHVATVHHETTTGILNP---LEAIAKVARSHGAVLIVDAMSSF---GAI-P 170 (355)
T ss_pred ecCC--CCCCCHHHHHHHHHh----CCCceEEEEEecCCcccchhH---HHHHHHHHHHcCCEEEEEecccc---CCc-c
Confidence 8764 356899999999875 135677888999999999987 78889999999999999998763 222 2
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccC-CCCCceeEEEeecCHHHHHHHHHc-------------------cccCCCcH
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDL-GLPGFRVGTIYSYNDKVVTTARRM-------------------SSFTLISS 312 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~G~RiG~i~~~~~~~~~~~~~~-------------------~~~~~~s~ 312 (442)
.++... +..++++|++|.+ |.+| +||++++ +.+.+.+... ...+..+.
T Consensus 171 ~~~~~~---------~~d~~~~s~~K~l~~~~G--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 238 (355)
T TIGR03301 171 IDIEEL---------DVDALIASANKCLEGVPG--FGFVIAR-RDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPT 238 (355)
T ss_pred cchhhc---------CccEEEecCCcccccCCc--eeEEEEC-HHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcH
Confidence 222222 3447789999986 5555 6999995 4444444310 01234555
Q ss_pred HHHHHHHHHhcCchhHHH-HHHHHHHHHHHHHHHHHHHHHhCCCeeecC---CceEEEEEecCCcccccChhhHHHHHHH
Q 046900 313 QTQYLLASMLSNKKFTEN-YIKTNRERLQKRYQMIIEGLRSAGIECLKG---NAGLFCWMNLSPLLEEQTREGELALWDS 388 (442)
Q Consensus 313 ~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (442)
+.+.++...++... ++ ++++..++++++++++.+.|++.|+++..+ .+++++|+.++.... .+..++.+.
T Consensus 239 ~~~~a~~~al~~~~--~~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 312 (355)
T TIGR03301 239 HTVYAFAQALEELE--AEGGVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDPD----FDFDDFYQE 312 (355)
T ss_pred HHHHHHHHHHHHHH--HcccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCCc----chHHHHHHH
Confidence 66666555554211 11 256667788899999999999888876543 345678888875211 024577888
Q ss_pred HHHcCcEEEeCCCCCCCCCCCEEEEEe-ecCCHHHHHHHHHHHHHHH
Q 046900 389 MLHEVKLNISPGSSCHCSEPGWFRVCF-ANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 389 l~~~~gi~v~pg~~f~~~~~~~iRls~-~~~~~e~i~~~l~~l~~~l 434 (442)
|.++ ||.+.+|..+. .+++||++ ...++++++++++.|++++
T Consensus 313 l~~~-gi~i~~~~~~~---~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 313 LKER-GFVIYPGKLTL---ADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred HHHC-CEEEECCcccc---ccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 7666 99999987553 27899997 4448999999999998753
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=226.95 Aligned_cols=294 Identities=15% Similarity=0.163 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh----cCCCC----eEEEcCCCCcChHHhHhhhcCcEEE
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL----ADPGD----ALLVPTPYYPGFDRDLRWRTGIKIV 170 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l----~~~gd----~Vl~~~p~y~~~~~~~~~~~G~~v~ 170 (442)
+....+++.+.+. ...+++++++|+++++..+++++ .++|| .|++.+++|+++...+.. .+....
T Consensus 73 ~~~~~la~~l~~~------~~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~-~~~~~~ 145 (389)
T PRK01278 73 PEQERLAERLVEN------SFADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIA-AGGQEK 145 (389)
T ss_pred hHHHHHHHHHHhh------CCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHh-ccCChh
Confidence 3444555555542 12578999999999999998876 44666 899999999988766543 332222
Q ss_pred EEec-CC-CCCCc----CCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCC-cCCCHHHHHHHHHHHHhcCcEEEEeccCC
Q 046900 171 PIHC-DS-SNNFQ----ITPQALEAAYKEAESKDMRVRGVLITNPSNPLG-ATIQRSVLEELLDFATRKNIHLVSDEIYS 243 (442)
Q Consensus 171 ~v~~-~~-~~~~~----~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG-~~~~~~~l~~l~~~~~~~~~~vi~De~y~ 243 (442)
.... .+ ..++. .|++.+++.+.+ ++++|+++.++||+| .+++.+.+++|.++|++||+++|+||+|.
T Consensus 146 ~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~ 219 (389)
T PRK01278 146 YLEGFGPLVPGFDQVPFGDIEALKAAITP------NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQC 219 (389)
T ss_pred hcccCCCCCCCceEeCCCCHHHHHHhhCC------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 1110 00 11222 578999988853 788888887788898 78899999999999999999999999999
Q ss_pred cCCCCCCCccc-HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHH
Q 046900 244 GSAFSSSEFVS-IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLAS 320 (442)
Q Consensus 244 ~~~~~~~~~~s-~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~ 320 (442)
.+.+.+..+.. ...+. ++ +.||||.++ +|+|+||++++ +.+.+.+.... ..+..+++.|.++.+
T Consensus 220 g~g~~g~~~~~~~~~~~-------pd----i~t~sK~l~-~G~~ig~~~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a 286 (389)
T PRK01278 220 GMGRTGKLFAHEWAGVT-------PD----IMAVAKGIG-GGFPLGACLAT-EEAAKGMTPGTHGSTYGGNPLAMAVGNA 286 (389)
T ss_pred CCCcCCcceeecccCCC-------CC----EEEEehhcc-CCcceEEEEEc-HHHHhccCCCCCCCCCCccHHHHHHHHH
Confidence 87665542211 11111 12 358999998 99999999994 55555554322 224567888888866
Q ss_pred HhcC---chhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEE
Q 046900 321 MLSN---KKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNI 397 (442)
Q Consensus 321 ~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v 397 (442)
.++. .++ .++++++.+.++++++.+.+.+.+. +.... ..|+++|++++. ++.+++.+|+++ ||.+
T Consensus 287 ~l~~l~~~~~-~~~~~~~~~~l~~~l~~l~~~~~~~-~~~v~-g~G~~~~i~~~~--------~~~~~~~~l~~~-GV~~ 354 (389)
T PRK01278 287 VLDVILAPGF-LDNVQRMGLYLKQKLEGLVDRFPDV-IEEVR-GKGLLLGLKCVV--------PNRDLVQALRDE-GLLT 354 (389)
T ss_pred HHHHHhhhHH-HHHHHHHHHHHHHHHHHHHhhCCCc-eeeEe-cccEEEEEEEec--------CHHHHHHHHHHC-CeEE
Confidence 6652 222 3445555566665555543322111 22223 367788888753 256889999888 9999
Q ss_pred eCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 398 SPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 398 ~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
.|+. .+++||+++ .++++++++++++|.+++.+
T Consensus 355 ~p~~------~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 355 VGAG------DNVVRLLPPLIITEEEIDEALERLERAAES 388 (389)
T ss_pred eecC------CCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 9863 468999975 34899999999999998864
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-26 Score=208.85 Aligned_cols=341 Identities=18% Similarity=0.298 Sum_probs=250.7
Q ss_pred ceeeeecccc--cc---c-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCc-cCCC
Q 046900 49 GVIQMGLAEN--QV---S-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAK-FDLN 121 (442)
Q Consensus 49 ~~i~l~~~~n--~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~~ 121 (442)
+.|||+++.- .- | .+.++++-+..... .....|.+..|.+.+++++++.+-. ...+ ++.+
T Consensus 27 ~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~----------~~~k~Yl~i~G~~~f~~~~~~llFG---~d~~~l~~~ 93 (396)
T COG1448 27 NKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQ----------EKTKNYLPIEGLPEFLEAVQKLLFG---ADSPALAED 93 (396)
T ss_pred CeeeeeeeeeeCCCCCcchhHHHHHHHHHhhcc----------ccccccCCcCCcHHHHHHHHHHhcC---CCcHHHHhh
Confidence 4579998852 11 1 35555544443322 1345799999999999999998742 1100 2233
Q ss_pred c--EEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhc
Q 046900 122 R--IVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESK 197 (442)
Q Consensus 122 ~--i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 197 (442)
. -+-|.|+|.|+.+....+. .+...|.+++|+|+.+...+.. .|+++..+|.-+..+-.+|.+.+...|++..
T Consensus 94 Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~-aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~-- 170 (396)
T COG1448 94 RVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEA-AGLEVETYPYYDAETKGLDFDGMLADLKTAP-- 170 (396)
T ss_pred hHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHh-cCCceeeeeccccccccccHHHHHHHHHhCC--
Confidence 3 4567899999999987763 3556799999999999999994 9999999998666566799999999998753
Q ss_pred CCceeEEEEe-CCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC-CcccHHHHHhhhcCCCCCcEEEEec
Q 046900 198 DMRVRGVLIT-NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS-EFVSIAEILEARQYKDSERVHIVYS 275 (442)
Q Consensus 198 ~~~~~~v~l~-~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~S 275 (442)
.-.+|+|- .+|||||.-++.+++++|+++.++.+.+.+.|-+|..|.-+.. ....+..+... ...+++..|
T Consensus 171 --~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~-----~~~~lva~S 243 (396)
T COG1448 171 --EGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEV-----GPELLVASS 243 (396)
T ss_pred --CCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHh-----CCcEEEEeh
Confidence 22345554 4589999999999999999999999999999999998654321 12223333332 234888999
Q ss_pred CcccCCCCCceeEEEe--ecCHHHHHHHH-H----ccc-cCCCcHHHHHHHHHHhcCchhHHHH---HHHHHHHHHHHHH
Q 046900 276 LSKDLGLPGFRVGTIY--SYNDKVVTTAR-R----MSS-FTLISSQTQYLLASMLSNKKFTENY---IKTNRERLQKRYQ 344 (442)
Q Consensus 276 ~SK~~g~~G~RiG~i~--~~~~~~~~~~~-~----~~~-~~~~s~~~q~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~ 344 (442)
|||.||+.|-|+|.+. +.+.+....+. + .++ +++.+.....+++.+|++++.-.+| +..+++++.+.|.
T Consensus 244 ~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~ 323 (396)
T COG1448 244 FSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQ 323 (396)
T ss_pred hhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999864 45554443322 1 222 3444556778888999987644444 5678999999999
Q ss_pred HHHHHHHhC----CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCH
Q 046900 345 MIIEGLRSA----GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSE 420 (442)
Q Consensus 345 ~l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~ 420 (442)
.|.+.|++. .+.+...+.|||.+..+.. +-..+|.+++||.+.. .| |||++.+++
T Consensus 324 ~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls~-----------~QV~rLree~~IY~v~--------sG--Ri~vaGl~~ 382 (396)
T COG1448 324 ALVDALKALGAPRNFDFIISQRGMFSYTGLSP-----------EQVDRLREEFGIYLVA--------SG--RINVAGLNT 382 (396)
T ss_pred HHHHHHHhhCCCcccchHhhcCceeecCCCCH-----------HHHHHHHHhccEEEec--------CC--eeeeccCCh
Confidence 999999984 4778889999999875433 4467788999999875 23 999998899
Q ss_pred HHHHHHHHHHHHH
Q 046900 421 QTLEVALKRIHNF 433 (442)
Q Consensus 421 e~i~~~l~~l~~~ 433 (442)
..++...+.|.++
T Consensus 383 ~ni~~va~ai~~v 395 (396)
T COG1448 383 SNIDYVAKAIAAV 395 (396)
T ss_pred hhHHHHHHHHHhh
Confidence 9999999988875
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-26 Score=224.15 Aligned_cols=299 Identities=14% Similarity=0.115 Sum_probs=205.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhhcCcEEEEEe
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTGIKIVPIH 173 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~ 173 (442)
-..+|++++|++++ .+..++++++++++..++..+.. +++.|+.+...|......+.. .|+++..++
T Consensus 91 ~~~~Le~~la~~~g----------~~~~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~-~g~~~~~~~ 159 (402)
T TIGR01821 91 PHVELEAELADLHG----------KESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRH-SGAEKFIFR 159 (402)
T ss_pred HHHHHHHHHHHHhC----------CCeEEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHH-cCCeEEEEC
Confidence 35678888888764 23445555568888888887765 677777776667666666664 788776554
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
. .|++++++.++... ..++++|++++|+||||.+.+ +++|.++|++|++++|+||+|+...++.. ..
T Consensus 160 ~-------~d~~~l~~~l~~~~--~~~~~~v~~e~~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~-g~ 226 (402)
T TIGR01821 160 H-------NDVAHLEKLLQSVD--PNRPKIIAFESVYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPR-GG 226 (402)
T ss_pred C-------CCHHHHHHHHHhcc--CCCCeEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCC-CC
Confidence 2 36788888886421 125788999999999999998 78888889999999999999985444321 11
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc----CCCcHHHHHHHHHHhcCchhHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF----TLISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~ 329 (442)
....... ...+..++++||||+||++| ||+++ ++.+.+.++..... ...++..+.++.+.++.. +
T Consensus 227 g~~~~~~----~~~~~div~~t~sKa~g~~G---G~i~~-~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~---~ 295 (402)
T TIGR01821 227 GIAERDG----LMHRIDIIEGTLAKAFGVVG---GYIAA-SRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHL---K 295 (402)
T ss_pred ccchhcc----CCCCCeEEEEechhhhccCC---ceeec-CHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHh---h
Confidence 1111110 00133577899999999888 99988 56666666543322 235566677766666532 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC-CC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS-EP 408 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~-~~ 408 (442)
+. ...++.+.++++++.+.|++.|+++.++.++ ++.+.++.. ..+.++++.|++++||.+.+....... +.
T Consensus 296 ~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-i~~i~~~~~------~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~ 367 (402)
T TIGR01821 296 ES-QDLRRAHQENVKRLKNLLEALGIPVIPNPSH-IVPVIIGDA------ALCKKVSDLLLNKHGIYVQPINYPTVPRGT 367 (402)
T ss_pred cC-HHHHHHHHHHHHHHHHHHHHcCCCcCCCCCC-EEEEEeCCH------HHHHHHHHHHHhcCCEEEEeECCCCCCCCC
Confidence 11 3445566788899999999888887777666 555555431 135678888877679999985533222 34
Q ss_pred CEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 409 GWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 409 ~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.++||++. ..++++++++++.|++++++.
T Consensus 368 ~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 368 ERLRITPTPAHTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 68999985 338999999999999988754
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-26 Score=226.68 Aligned_cols=291 Identities=17% Similarity=0.235 Sum_probs=205.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHh----hcCCCCeEEEcCCCCcC----hHHhHhhhcCcE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFI----LADPGDALLVPTPYYPG----FDRDLRWRTGIK 168 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~----l~~~gd~Vl~~~p~y~~----~~~~~~~~~G~~ 168 (442)
..++|+++|++++. .++++|++|+|+++++..++.+ ++++||.|+++++.|++ +...++ ..|++
T Consensus 69 ~~~~r~~la~~~~~-------~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~-~~g~~ 140 (406)
T PRK09295 69 MENVRKQAALFINA-------RSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCA-RVGAE 140 (406)
T ss_pred HHHHHHHHHHHcCc-------CCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHH-HcCcE
Confidence 56888888888751 1578999999999999999876 46899999999998865 334445 37999
Q ss_pred EEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCC
Q 046900 169 IVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS 248 (442)
Q Consensus 169 v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~ 248 (442)
++.++++. ++.+|++.|++.+.+ +++++++++|+||||.+++ +++|+++|+++|+++++|++|+...
T Consensus 141 v~~v~~~~--~~~~d~~~l~~~i~~------~t~lv~l~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~-- 207 (406)
T PRK09295 141 LRVIPLNP--DGTLQLETLPALFDE------RTRLLAITHVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAVMH-- 207 (406)
T ss_pred EEEEecCC--CCCCCHHHHHHhcCC------CcEEEEEecchhcccccCC---HHHHHHHHHHcCCEEEEEcccccCc--
Confidence 99999875 346899999998864 7899999999999999999 6778888999999999999997422
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc----------------------c-
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM----------------------S- 305 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~----------------------~- 305 (442)
...++... +..+++.|++|.+|.+| +||+++++ .+.+.+... .
T Consensus 208 --~~~~~~~~---------~~D~~~~s~~K~~gp~G--~G~l~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r 273 (406)
T PRK09295 208 --HPVDVQAL---------DCDFYVFSGHKLYGPTG--IGILYVKE-ALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWR 273 (406)
T ss_pred --cccCchhc---------CCCEEEeehhhccCCCC--cEEEEEch-HhHhhCCCcccCCceeeeeecCCccccCCchhh
Confidence 12222222 23377899999888666 79999854 443332210 0
Q ss_pred -ccCCCcHHHHHHHHHHhcCchhHHH-HHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC--ceEEEEEecCCcccccChh
Q 046900 306 -SFTLISSQTQYLLASMLSNKKFTEN-YIKTNRERLQKRYQMIIEGLRSA-GIECLKGN--AGLFCWMNLSPLLEEQTRE 380 (442)
Q Consensus 306 -~~~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~--~g~~~~~~~~~~~~~~~~~ 380 (442)
..++.+.....++.+.++ ++.+ -++..+++.++.++++.+.|.+. |+++..+. .+ .+.+.++..
T Consensus 274 ~e~GT~~~~~~~~l~~al~---~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~-iv~~~~~~~------- 342 (406)
T PRK09295 274 FEAGTPNTGGIIGLGAALD---YVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLG-VIAFNLGKH------- 342 (406)
T ss_pred cCCCCccHHHHHHHHHHHH---HHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCce-EEEEEECCc-------
Confidence 012333444444444443 2222 24556677777888888988876 67776542 44 344455532
Q ss_pred hHHHHHHHHHHcCcEEEeCCCCCCC------CCCCEEEEEee--cCCHHHHHHHHHHHHHHHH
Q 046900 381 GELALWDSMLHEVKLNISPGSSCHC------SEPGWFRVCFA--NMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 381 ~~~~l~~~l~~~~gi~v~pg~~f~~------~~~~~iRls~~--~~~~e~i~~~l~~l~~~l~ 435 (442)
+..++...| +++||.++.|+.+.. ..++++|+|+. + +++|++.+++.|+++.+
T Consensus 343 ~~~~~~~~L-~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~yn-t~~did~l~~~l~~i~~ 403 (406)
T PRK09295 343 HAYDVGSFL-DNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYN-THEEVDRLVAGLQRIHR 403 (406)
T ss_pred CHHHHHHHH-HhCCeEEeccccchHHHHHHHCCCCEEEEEccCCC-CHHHHHHHHHHHHHHHH
Confidence 245566655 566999999886532 12468999997 4 88999999999988743
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-26 Score=225.45 Aligned_cols=302 Identities=16% Similarity=0.138 Sum_probs=205.4
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhhcCcEEEE
Q 046900 94 YHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTGIKIVP 171 (442)
Q Consensus 94 ~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~ 171 (442)
..-+.+|++++|++++ .++.+++++| ++++..++..+.. +++.|+.....|......++. .|+++..
T Consensus 90 ~~~~~~l~~~la~~~g---------~~~~~~~~sG-~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~-~~~~~~~ 158 (407)
T PRK09064 90 NHYHVELERELADLHG---------KEAALVFTSG-YVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRR-SRCEKHI 158 (407)
T ss_pred HHHHHHHHHHHHHHhC---------CCcEEEECcH-HHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHH-cCCcEEE
Confidence 3345778888888764 2445555555 5676666666654 777777776667666666664 7877665
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
++. .|++.+++.++... ..++++|++++|+||+|.+.+ +++|.++|+++++++|+||+|+...++..
T Consensus 159 ~~~-------~d~~~le~~l~~~~--~~~~~~v~~~~v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~- 225 (407)
T PRK09064 159 FRH-------NDVAHLEELLAAAD--PDRPKLIAFESVYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPR- 225 (407)
T ss_pred ECC-------CCHHHHHHHHHhcc--CCCCeEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCC-
Confidence 553 37788888886421 136789999999999999988 77888889899999999999984444321
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc----CCCcHHHHHHHHHHhcCchh
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF----TLISSQTQYLLASMLSNKKF 327 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~ 327 (442)
...+.....- ..+..++++||||+||++| ||+++ ++.+.+.+...... ...++..+.++.+.++ +
T Consensus 226 g~g~~~~~~~----~~~~div~~t~sKa~g~~G---G~~~~-~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~---~ 294 (407)
T PRK09064 226 GGGIAERDGL----MDRIDIIEGTLAKAFGVMG---GYIAG-SAALVDAVRSYAPGFIFTTSLPPAIAAAALASIR---H 294 (407)
T ss_pred CCChHHhcCC----CCCCeEEEEecchhhhccC---ceEec-CHHHHHHHHHhCccccccCcCCHHHHHHHHHHHH---H
Confidence 1122222110 1134688899999999888 99988 56666666543322 2334455555555443 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC-
Q 046900 328 TENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS- 406 (442)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~- 406 (442)
+++. ...+++++++++++.+.|++.|+++.++.++ ++++.++.. ..+.++.+.|++++||.+.+...+...
T Consensus 295 ~~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-iv~i~~~~~------~~~~~l~~~L~~~~gi~v~~~~~p~~~~ 366 (407)
T PRK09064 295 LKES-NEERERHQERAAKLKAALDAAGIPVMPNESH-IVPVMVGDP------EKCKKASDMLLEEHGIYVQPINYPTVPR 366 (407)
T ss_pred HhcC-HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-EEEEEeCCH------HHHHHHHHHHHHhCCEEEeeECCCCCCC
Confidence 2222 3346778889999999999888887766655 566665431 135778888877669999986533221
Q ss_pred CCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 407 EPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 407 ~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
+..++||+++ ..++++++++++.|++++++..
T Consensus 367 ~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~~ 399 (407)
T PRK09064 367 GTERLRITPTPFHTDEMIDHLVEALVEVWARLG 399 (407)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3368999987 3389999999999999987654
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=226.15 Aligned_cols=288 Identities=16% Similarity=0.178 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh---cCCCCeEEEcCCCCcChH----HhHhhhcCcEEE
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL---ADPGDALLVPTPYYPGFD----RDLRWRTGIKIV 170 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l---~~~gd~Vl~~~p~y~~~~----~~~~~~~G~~v~ 170 (442)
.++|+.++++++ +++++|++++|+++++..++.++ +++||+|+++.|.|+... ..++ ..|++++
T Consensus 63 ~~l~~~ia~~~~--------~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~-~~g~~~~ 133 (397)
T TIGR01976 63 DDAREAVADLLN--------ADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAE-RAGAKVK 133 (397)
T ss_pred HHHHHHHHHHcC--------CCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHH-hcCCEEE
Confidence 466777777664 45668999999999998877665 679999999999987653 3345 3899999
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
.++++++ ++.+|++.+++.+++ +++++++++|+||||.+++ +++|+++|+++|+++++|+++.. +.
T Consensus 134 ~~~~~~~-~~~~~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~----~~ 199 (397)
T TIGR01976 134 WARVDEA-TGELHPDDLASLLSP------RTRLVAVTAASNTLGSIVD---LAAITELVHAAGALVVVDAVHYA----PH 199 (397)
T ss_pred EEecccc-CCCcCHHHHHHhcCC------CceEEEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEEehhhhc----cc
Confidence 9998753 356899999998864 7889999999999999988 77888889999999999999852 22
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc------------CCCcHH---HH
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF------------TLISSQ---TQ 315 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~------------~~~s~~---~q 315 (442)
....+... +..+++.|++|.+| .|+||++++ +.+.+.+...... ++.+.. +.
T Consensus 200 ~~~~~~~~---------~~d~~~~s~~K~~g---~~~G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 266 (397)
T TIGR01976 200 GLIDVQAT---------GADFLTCSAYKFFG---PHMGILWGR-PELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGV 266 (397)
T ss_pred cCCCHHHc---------CCCEEEEechhhcC---CceEEEEEc-HHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHH
Confidence 22222222 23366789999875 468999984 4555444322111 111211 22
Q ss_pred HHHHHHhcCchh---------HHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecC-----CceEEEEEecCCcccccChh
Q 046900 316 YLLASMLSNKKF---------TENYIKTNRERLQKRYQMIIEGLRSAG-IECLKG-----NAGLFCWMNLSPLLEEQTRE 380 (442)
Q Consensus 316 ~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-----~~g~~~~~~~~~~~~~~~~~ 380 (442)
.++..++...+. +.+++++.+++..+.++++.+.|++.+ +++..+ .++ ++.+.++..
T Consensus 267 ~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------- 338 (397)
T TIGR01976 267 VAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVP-TVSFTVHGL------- 338 (397)
T ss_pred HHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCc-eEEEEeCCc-------
Confidence 233333332210 011245667777888889999998874 777654 344 555665431
Q ss_pred hHHHHHHHHHHcCcEEEeCCCCCCC---------CCCCEEEEEee-cCCHHHHHHHHHHH
Q 046900 381 GELALWDSMLHEVKLNISPGSSCHC---------SEPGWFRVCFA-NMSEQTLEVALKRI 430 (442)
Q Consensus 381 ~~~~l~~~l~~~~gi~v~pg~~f~~---------~~~~~iRls~~-~~~~e~i~~~l~~l 430 (442)
+..++.++|.++ ||.+..|..|.. ...+++|||+. ..++++++++++.|
T Consensus 339 ~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 339 PPQRVVRRLADQ-GIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred CHHHHHHHHHHC-CeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 245788888665 999998876541 13468999996 22788899988764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=229.32 Aligned_cols=334 Identities=15% Similarity=0.136 Sum_probs=221.2
Q ss_pred CCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+|||..+ .+.++ ++.+.+.+.+..... + .....|+...+ . ++++++.+..+ . .+
T Consensus 39 d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~----~----~~~~~~~~~~~-~----~la~~l~~~~~--~-~~ 102 (398)
T PRK03244 39 DVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATL----G----HVSNLFATEPQ-I----ALAERLVELLG--A-PE 102 (398)
T ss_pred ECCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhc----c----CccCccCCHHH-H----HHHHHHHHhCC--C-CC
Confidence 3445678999765 34443 355555554433210 0 01123544332 3 44444444333 1 13
Q ss_pred CCcEEEecChHHHHHHHHHhhcCCC-CeEEEcCCCCcChHHhHhhhcCc------------EEEEEecCCCCCCcCCHHH
Q 046900 120 LNRIVVTAGATAANELLTFILADPG-DALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCDSSNNFQITPQA 186 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~~g-d~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~~~~~~~~d~~~ 186 (442)
+++|++++|+++++..+++.+..+| +.|+..+++|.++........|. ++..+|. .|++.
T Consensus 103 ~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~ 175 (398)
T PRK03244 103 GGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDA 175 (398)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHH
Confidence 5799999999999999998776666 46777778998875433311232 1222221 37888
Q ss_pred HHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHH-HHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCC
Q 046900 187 LEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSV-LEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYK 265 (442)
Q Consensus 187 l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~-l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~ 265 (442)
+++.+.+ ++++|+++.++||||.+++.++ +++|.++|++||+++|+||+|..+...+..+ . .... .
T Consensus 176 l~~~~~~------~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~-~-~~~~-~---- 242 (398)
T PRK03244 176 LAAAVDD------DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWF-A-HQHD-G---- 242 (398)
T ss_pred HHHhhcC------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHH-h-hhhh-C----
Confidence 9887743 7888999888999999997766 9999999999999999999998765544321 1 1111 1
Q ss_pred CCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 046900 266 DSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRY 343 (442)
Q Consensus 266 ~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 343 (442)
..+. +.+|||++| +|+|+||++++ +.+.+.+.. ....+..+++.+.++.+.|+... . .+..+++++++
T Consensus 243 ~~pD---i~t~sK~l~-~G~~ig~~~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--~---~~~~~~~~~~~ 312 (398)
T PRK03244 243 VTPD---VVTLAKGLG-GGLPIGACLAF-GPAADLLTPGLHGSTFGGNPVACAAALAVLDTIA--S---EGLLENAERLG 312 (398)
T ss_pred CCCC---EEEEchhhh-CCcccEEEEEc-HHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHH--h---ccHHHHHHHHH
Confidence 0122 248899998 99999999995 556666543 22335678899999888876211 0 12345556667
Q ss_pred HHHHHHHHhCCCee--ecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeec-CCH
Q 046900 344 QMIIEGLRSAGIEC--LKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFAN-MSE 420 (442)
Q Consensus 344 ~~l~~~L~~~g~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~ 420 (442)
+++.+.|++.+... .....|+++|+.++.. .+..+++.++++ ||.+.+. ....+|++++. .++
T Consensus 313 ~~l~~~L~~~~~~~~~~v~g~g~~~~i~~~~~-------~~~~~~~~l~~~-Gv~~~~~------~~~~iR~~p~~~~t~ 378 (398)
T PRK03244 313 EQLRAGIEALGHPLVDHVRGRGLLLGIVLTAP-------VAKAVEAAAREA-GFLVNAV------APDVIRLAPPLIITD 378 (398)
T ss_pred HHHHHHHHhcCCCceeeEeeccEEEEEEEecc-------HHHHHHHHHHHC-CeEEeec------CCCEEEEECCCcCCH
Confidence 77888888754432 1234678999998642 256788888776 9999873 23679999863 589
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046900 421 QTLEVALKRIHNFMQKR 437 (442)
Q Consensus 421 e~i~~~l~~l~~~l~~~ 437 (442)
+++++++++|.+++.+.
T Consensus 379 ~~i~~~~~~l~~~l~~~ 395 (398)
T PRK03244 379 AQVDAFVAALPAILDAA 395 (398)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998764
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-26 Score=223.42 Aligned_cols=290 Identities=16% Similarity=0.145 Sum_probs=203.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD 175 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~ 175 (442)
...+|++.+|++++ .+.+++++|+++++..++++++.+||.|+++.+.|..+...+.. .|++++.++.
T Consensus 100 ~~~~le~~la~~~g----------~~~~~~~~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~-~g~~~~~~~~- 167 (407)
T PRK07179 100 PKPQFEKKLAAFTG----------FESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRA-AGAQAHPFRH- 167 (407)
T ss_pred HHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHhCCCCCEEEEECCcCHHHHHHHHH-CCCeEEEecC-
Confidence 45788888888864 34678899999999999999999999999999999888777774 8888776642
Q ss_pred CCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccH
Q 046900 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSI 255 (442)
Q Consensus 176 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~ 255 (442)
.|++.|++.+++. ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|+...++. ...++
T Consensus 168 ------~d~~~l~~~l~~~-----~~~lV~v~~v~n~tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~-~g~g~ 232 (407)
T PRK07179 168 ------NDVDHLRRQIERH-----GPGIIVVDSVYSTTGTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGP-QGAGL 232 (407)
T ss_pred ------CCHHHHHHHHHhc-----CCeEEEECCCCCCCCcccc---HHHHHHHHHHcCCEEEEECcccccCcCC-CCCch
Confidence 4889999988641 4678888899999999999 6788888999999999999998543322 11122
Q ss_pred H-HHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc--C--CCcHHHHHHHHHHhcCchhHHH
Q 046900 256 A-EILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--T--LISSQTQYLLASMLSNKKFTEN 330 (442)
Q Consensus 256 ~-~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~--~~s~~~q~~~~~~l~~~~~~~~ 330 (442)
. .+.. .....+++.|+||++| .|+||+++ ++.+.+.+...... + +.++....++.+.++.. +
T Consensus 233 ~~~~~~-----~~~vdi~~~S~sK~~g---~~~G~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~----~ 299 (407)
T PRK07179 233 VAELGL-----TSRVHFITASLAKAFA---GRAGIITC-PRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVI----E 299 (407)
T ss_pred HHhcCC-----CCCCCEEEeechHhhh---ccCeEEEe-CHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHH----h
Confidence 2 1111 0122477899999996 26999998 45666665543322 1 11222222233333321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC----C
Q 046900 331 YIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC----S 406 (442)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~----~ 406 (442)
.....+++++++++++.+.|.+.|+++. +.+ .++++.++... ....+.+.|.++ ||.+. .|.. .
T Consensus 300 ~~~~~~~~l~~~~~~l~~~L~~~g~~v~-~~~-~i~~l~~~~~~------~~~~~~~~L~~~-GI~~~---~~~~p~~~~ 367 (407)
T PRK07179 300 SADDRRARLHANARFLREGLSELGYNIR-SES-QIIALETGSER------NTEVLRDALEER-NVFGA---VFCAPATPK 367 (407)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCCCC-CCC-CEEEEEeCCHH------HHHHHHHHHHHC-CceEe---eecCCCCCC
Confidence 1245678899999999999998888766 344 47777764311 245666676565 99743 2211 1
Q ss_pred CCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 407 EPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 407 ~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
..+++||+++ ..+++++++++++|++++.+.
T Consensus 368 ~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 368 NRNLIRLSLNADLTASDLDRVLEVCREARDEV 399 (407)
T ss_pred CCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence 3478999997 348999999999999988764
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=217.74 Aligned_cols=294 Identities=16% Similarity=0.170 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHHHHhCCCCccCC--CcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcCh--HHhHhhhcCcEEEEEe
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDL--NRIVVTAGATAANELLTFILADPGDALLVPTPYYPGF--DRDLRWRTGIKIVPIH 173 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~--~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~--~~~~~~~~G~~v~~v~ 173 (442)
.++|+.++++++ +++ ++|++|+|+++++..++.++..+||.+++..+++.+. ...++ ..|++++.++
T Consensus 38 ~~~r~~la~l~~--------~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~-~~g~~~~~v~ 108 (363)
T TIGR02326 38 EQIRQQLLALAT--------AEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAE-YLGIPHHVVD 108 (363)
T ss_pred HHHHHHHHHHhC--------CCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHH-HcCCceEEEe
Confidence 456666666654 444 4799999999999999999988998888776665544 34556 4899999999
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
+++ +..+|++.+++.+++. .+++++.+++++||||.+++ +++|.++|+++|+++|+|++++ ++.. ..
T Consensus 109 ~~~--~~~~d~~~l~~~l~~~----~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~---~g~~-~~ 175 (363)
T TIGR02326 109 TGE--VEPPDVVEVEAILAAD----PAITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSS---FGGI-PI 175 (363)
T ss_pred CCC--CCCCCHHHHHHHHhhC----CCccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEEEEcccc---ccCc-cc
Confidence 875 3458999999998751 24677888999999999998 6788999999999999999876 3332 23
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccC-CCCCceeEEEeecCHHHHHHHHH-cc-------------------ccCCCcH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDL-GLPGFRVGTIYSYNDKVVTTARR-MS-------------------SFTLISS 312 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~G~RiG~i~~~~~~~~~~~~~-~~-------------------~~~~~s~ 312 (442)
++.++ +.-+++.|++|.+ |.+| +||++++++.+.. +.. .. ..+..+.
T Consensus 176 ~~~~~---------~~D~~~~s~~K~l~~p~G--~G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~ 243 (363)
T TIGR02326 176 DIAEL---------HIDYLISSANKCIQGVPG--FGFVIARQAELAA-CKGNARSLSLDLYDQWRCMEDNHGKWRFTSPT 243 (363)
T ss_pred chhhc---------CccEEEecCccccccCCc--ceEEEECHHHHHH-hhcCCCceeecHHHHHHHHhccCCCCCCCCcH
Confidence 33333 2237789999987 4445 7999995444332 211 00 1124456
Q ss_pred HHHHHHHHHhcCchhHHH-HHHHHHHHHHHHHHHHHHHHHhCCCeeecC---CceEEEEEecCCcccccChhhHHHHHHH
Q 046900 313 QTQYLLASMLSNKKFTEN-YIKTNRERLQKRYQMIIEGLRSAGIECLKG---NAGLFCWMNLSPLLEEQTREGELALWDS 388 (442)
Q Consensus 313 ~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (442)
+.+.++.+.++.. ..+ .+++.+++++++++++.+.|++.|++...+ .++...|+.++.... .+..++.+.
T Consensus 244 ~~~~al~~al~~l--~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~ 317 (363)
T TIGR02326 244 HVVHAFAQALLEL--EKEGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDPD----YRFADFYQR 317 (363)
T ss_pred HHHHHHHHHHHHH--HHhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCCC----CCHHHHHHH
Confidence 6666655555421 121 245677899999999999999888877543 455667787775310 024567777
Q ss_pred HHHcCcEEEeCCCCCCCCCCCEEEEEe-ecCCHHHHHHHHHHHHHHHH
Q 046900 389 MLHEVKLNISPGSSCHCSEPGWFRVCF-ANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 389 l~~~~gi~v~pg~~f~~~~~~~iRls~-~~~~~e~i~~~l~~l~~~l~ 435 (442)
|.++ ||.+.||..+. ..++||++ +..+.++++++++.|++++.
T Consensus 318 L~~~-gi~v~~g~~~~---~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 318 LKEQ-GFVIYPGKVSQ---VDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred HHHC-CEEEECCcCCC---CCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 7655 99999997652 46899996 54589999999999998764
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-25 Score=215.57 Aligned_cols=298 Identities=17% Similarity=0.184 Sum_probs=206.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCC--CcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcCh--HHhHhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDL--NRIVVTAGATAANELLTFILADPGDALLVPTPYYPGF--DRDLRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~--~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~--~~~~~~~~G~~v~~v 172 (442)
+.++|+.++++++ .++ +.|++++|+++++..++.++..+||.|+++.++|.+. ...++ ..|++++.+
T Consensus 39 ~~~~~~~l~~l~~--------~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~-~~g~~~~~i 109 (368)
T PRK13479 39 TASVRAKLVAIAT--------GEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAE-YLGIAHVVL 109 (368)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHHHHHHHH-HcCCcEEEE
Confidence 4677777777765 333 5688999999999999999999999999998887665 35566 489999999
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+.++ ++.+|++++++.+++. .+++++++++|+||||...+ +++|.++|+++++++|+|+++. ++.. .
T Consensus 110 ~~~~--~~~~d~~~l~~~l~~~----~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~~livDa~~~---~g~~-~ 176 (368)
T PRK13479 110 DTGE--DEPPDAAEVEAALAAD----PRITHVALVHCETTTGILNP---LDEIAAVAKRHGKRLIVDAMSS---FGAI-P 176 (368)
T ss_pred ECCC--CCCCCHHHHHHHHHhC----CCCcEEEEEcccCccccccC---HHHHHHHHHHcCCEEEEEcccc---cCCc-c
Confidence 9874 3468999999988741 25678899999999999999 6788888889999999996664 3332 2
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccC-CCCCceeEEEeecCHHHHHHHHHcccc-------------------CCCcH
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDL-GLPGFRVGTIYSYNDKVVTTARRMSSF-------------------TLISS 312 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~G~RiG~i~~~~~~~~~~~~~~~~~-------------------~~~s~ 312 (442)
.++... +.-+++.|++|.+ |.+| +||++++ +.+.+.+...... ++.+.
T Consensus 177 ~~~~~~---------~~d~~v~s~~K~l~g~~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 244 (368)
T PRK13479 177 IDIAEL---------GIDALISSANKCIEGVPG--FGFVIAR-RSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPT 244 (368)
T ss_pred cccccc---------CceEEEecCccccccCCC--ceEEEEC-HHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcH
Confidence 222222 2236678999975 6677 6999995 4444443322111 23344
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC---ceEEEEEecCCcccccChhhHHHHHHHH
Q 046900 313 QTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN---AGLFCWMNLSPLLEEQTREGELALWDSM 389 (442)
Q Consensus 313 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~l~~~l 389 (442)
+.+.++.+.++.... ..++++..++++++++++.+.|++.|+++..+. .+..+.+.++.... . +..++.+.|
T Consensus 245 ~~~~~l~~al~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~l~~~L 319 (368)
T PRK13479 245 HVVAAFYQALLELEE-EGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHAPADPA---Y-DFKEFYERL 319 (368)
T ss_pred HHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEECCCCCC---c-CHHHHHHHH
Confidence 444444444432110 112456668889999999999999888765332 11122222332110 0 246788888
Q ss_pred HHcCcEEEeCCCCCCCCCCCEEEEEe-ecCCHHHHHHHHHHHHHHHHHH
Q 046900 390 LHEVKLNISPGSSCHCSEPGWFRVCF-ANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 390 ~~~~gi~v~pg~~f~~~~~~~iRls~-~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.++ ||.+.+|..+ ..+++|++. +..++++++++++.|+++++++
T Consensus 320 ~~~-gi~v~~g~~~---~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 320 KEQ-GFVIYPGKLT---QVDTFRIGCIGDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred HHC-CEEEecCCCC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 777 9999998654 246899985 6458999999999999998765
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-25 Score=218.16 Aligned_cols=287 Identities=15% Similarity=0.162 Sum_probs=199.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHh----hhcCcEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLR----WRTGIKIVP 171 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~----~~~G~~v~~ 171 (442)
-..+|++.+|++++ .+.+++++|+++++..++.+++++||.|+++.|.|+.+...+. ...|++++.
T Consensus 77 t~~~LE~~lA~l~g----------~~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~ 146 (418)
T PLN02242 77 TVLNLGRQMAALEG----------TEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTF 146 (418)
T ss_pred hHHHHHHHHHHHhC----------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEE
Confidence 45788888888865 4567899999999999999999999999999999988866542 126888776
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
++. .|++.+++++++ .++++|++++|+||||.+.+ +++|+++|++++++||+|++|..+.+.
T Consensus 147 ~d~-------~d~e~l~~~i~~-----~~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~~--- 208 (418)
T PLN02242 147 VDI-------TDLEAVKKAVVP-----GKTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVLS--- 208 (418)
T ss_pred cCC-------CCHHHHHHhcCc-----CCCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCCC---
Confidence 653 278899988854 14899999999999999986 788899999999999999999865431
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce-eEEEeecCHHHHHHHHHccc----cCCCcHHHHHHHHHHhcCch
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR-VGTIYSYNDKVVTTARRMSS----FTLISSQTQYLLASMLSNKK 326 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R-iG~i~~~~~~~~~~~~~~~~----~~~~s~~~q~~~~~~l~~~~ 326 (442)
...+ +..++++|+||.++.+|++ .||++++ +.+.+.+..... ..+.+...|.+...++...
T Consensus 209 ---~~~~---------g~divv~S~SK~l~g~g~~~gG~iv~~-~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~- 274 (418)
T PLN02242 209 ---PARL---------GADVVVHSISKFISGGADIIAGAVCGP-AELVNSMMDLHHGALMLLGPTMNPKVAFELSERLP- 274 (418)
T ss_pred ---HHHc---------CCcEEEEeCccccCCCCCceEEEEEcC-HHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCC-
Confidence 1112 3458899999999888987 5999884 555555554322 2333444566665555433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC-------------------ceEEEEEecCCcccccChhhHHHHHH
Q 046900 327 FTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN-------------------AGLFCWMNLSPLLEEQTREGELALWD 387 (442)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~l~~ 387 (442)
. +..+.+++.++++.+.+.|+++++++..|. .|-.+.+++.. .+.+..+++
T Consensus 275 t----l~~r~~~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~------~~~~~~f~~ 344 (418)
T PLN02242 275 H----LSLRMKEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDT------EERANRLMR 344 (418)
T ss_pred c----HHHHHHHHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECC------HHHHHHHHH
Confidence 2 344567888999999999999877665332 22345555532 123556666
Q ss_pred HHHHcC----cEEEeCCCCCCC---------------------CCCCEEEEEeecCCHH-HHHHHHHHHHHHHHHHH
Q 046900 388 SMLHEV----KLNISPGSSCHC---------------------SEPGWFRVCFANMSEQ-TLEVALKRIHNFMQKRE 438 (442)
Q Consensus 388 ~l~~~~----gi~v~pg~~f~~---------------------~~~~~iRls~~~~~~e-~i~~~l~~l~~~l~~~~ 438 (442)
.+ +-- .+.+..|..-.. -.++.+|||++- | +.+.+++.|.+++...+
T Consensus 345 ~l-~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl---E~~~~dli~dl~~al~~~~ 417 (418)
T PLN02242 345 YL-QNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGY---TGTLEQRWSQFEKALSAMK 417 (418)
T ss_pred Hh-hcccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecC---CCCHHHHHHHHHHHHHHhh
Confidence 55 211 122333322110 123689999996 4 36777888888877643
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=218.50 Aligned_cols=298 Identities=17% Similarity=0.202 Sum_probs=214.4
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC------------C--CCeEEEcCCCCc
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD------------P--GDALLVPTPYYP 155 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~------------~--gd~Vl~~~p~y~ 155 (442)
.|....+..++++++++++.+.+|. +.+.+++++|+|+++++..++.++.. + ++.|+++.++|.
T Consensus 29 ~y~~~~~~~~le~~~~~~~~~~~g~--~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~ 106 (345)
T cd06450 29 TWDESPAATEMEAEVVNWLAKLFGL--PSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHV 106 (345)
T ss_pred ccccCchhHHHHHHHHHHHHHHhCC--CCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchh
Confidence 4777778899999999999998772 22456899999999999999888743 2 347888999999
Q ss_pred ChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcE
Q 046900 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIH 235 (442)
Q Consensus 156 ~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~ 235 (442)
.+...+.. .|++++.++++++ +.+|++.|++.+.+...++.+++++++++|+||||.+.+ +++|+++|+++|++
T Consensus 107 ~~~~~~~~-~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~ 180 (345)
T cd06450 107 SVEKAAAY-LDVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP---LEEIADLAEKYDLW 180 (345)
T ss_pred HHHHHHHH-HhcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---HHHHHHHHHHhCCe
Confidence 99888885 7999999998764 379999999999875545557788899999999999866 78888999999999
Q ss_pred EEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHH
Q 046900 236 LVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQ 315 (442)
Q Consensus 236 vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q 315 (442)
+++|++|+.+.+........ ... ..+-..+..|++|.++ ++.++|+++.+ .+.+
T Consensus 181 l~vD~a~~~~~~~~~~~~~~---~~~----~~~~d~~~~s~~K~l~-~p~g~g~~~~~------------------~~~~ 234 (345)
T cd06450 181 LHVDAAYGGFLLPFPEPRHL---DFG----IERVDSISVDPHKYGL-VPLGCSAVLVR------------------ALKL 234 (345)
T ss_pred EEEechhhHHHhhChhhHHH---hcC----ccccCEEEEchhHhhC-CCcchHHHHHH------------------HHHH
Confidence 99999998765432111111 110 0122245679999775 77889998773 3444
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec-CCceEEEEEecCCcccccChhhHHHHHHHHHHcC
Q 046900 316 YLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK-GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEV 393 (442)
Q Consensus 316 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 393 (442)
.++..++... .+++.++++.+.++++.+.|.+. ++++.. ++++++.| .++.... ...+..++.+.|.++
T Consensus 235 ~~~l~~l~~~-----g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f-~~~~~~~--~~~~~~~i~~~L~~~- 305 (345)
T cd06450 235 WATLRRFGRD-----GYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCF-RLKPSVK--LDELNYDLSDRLNER- 305 (345)
T ss_pred HHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEE-EECCcch--hhHHHHHHHHHHHhc-
Confidence 4445555432 24566677778888999999876 676654 56665554 4443100 001356788888666
Q ss_pred cEEEeCCCCCCCCCCCEEEEEeec-C-CHHHHHHHHHHHHH
Q 046900 394 KLNISPGSSCHCSEPGWFRVCFAN-M-SEQTLEVALKRIHN 432 (442)
Q Consensus 394 gi~v~pg~~f~~~~~~~iRls~~~-~-~~e~i~~~l~~l~~ 432 (442)
|+.+.++..+. .++++|+++.. . ++++++++++.|++
T Consensus 306 g~~~~~~~~~~--~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 306 GGWHVPATTLG--GPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred CCEEEEeeEEC--CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 66655554443 45789999974 2 78999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-25 Score=217.40 Aligned_cols=308 Identities=14% Similarity=0.153 Sum_probs=208.4
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEec
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHC 174 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~ 174 (442)
....++|+.+|++++ .+++++++|+++++..++.+++++||.|+++.++|......++. .|++++.++.
T Consensus 63 ~~~~~l~~~lA~~~g----------~~~~~~~~g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~-~G~~~~~v~~ 131 (387)
T PRK09331 63 PPIADFHEDLAEFLG----------MDEARVTHGAREGKFAVMHSLCKKGDYVVLDGLAHYTSYVAAER-AGLNVREVPK 131 (387)
T ss_pred hHHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHH-cCCEEEEEeC
Confidence 357899999999975 34688999999999999999999999999999998887777774 8999999998
Q ss_pred CCCCCCcCCHHHHHHHHHHHH-hcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 175 DSSNNFQITPQALEAAYKEAE-SKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~-~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
+.+.++.+|++.+++.+++.. ..++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+. +....
T Consensus 132 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~---l~~I~~la~~~g~~livD~a~~~----g~~~~ 204 (387)
T PRK09331 132 TGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD---AKKVAKVAHEYGIPFLLNGAYTV----GRMPV 204 (387)
T ss_pred ccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCccc----CCcCC
Confidence 433356799999999997531 11246889999999999999877 88888999999999999999984 21122
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccC-------CCcHHHHHHHHHHhcCch
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT-------LISSQTQYLLASMLSNKK 326 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~-------~~s~~~q~~~~~~l~~~~ 326 (442)
+.... +..+++.|++|+++ .+.|+||++++ +.+.+.+.+....+ ..++..+..+..++...+
T Consensus 205 ~~~~~---------g~D~~~~s~~K~l~-~~~~~G~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~ 273 (387)
T PRK09331 205 DGKKL---------GADFIVGSGHKSMA-ASAPSGVLATT-EEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFP 273 (387)
T ss_pred CHHHc---------CCCEEEeeCccccc-CCCCEEEEEEC-HHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHH
Confidence 33222 33477899999997 56699999995 45444443321110 001111111121222112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec--CCceEEEEEecCCccc--ccChhhHHHHHHHHHHcCcEEEeCCC
Q 046900 327 FTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK--GNAGLFCWMNLSPLLE--EQTREGELALWDSMLHEVKLNISPGS 401 (442)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~gi~v~pg~ 401 (442)
...+.++ ..++..++.+++.+.|++. |+++.. +....++.++.+.... ........++.+.|.++ ||...+.
T Consensus 274 ~~~~~~~-~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gI~~~~~- 350 (387)
T PRK09331 274 HVVERVK-RWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKR-GIHGIKP- 350 (387)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHc-CceEEcc-
Confidence 2233332 2344456677888999998 888873 2223355566552110 00011245688888665 9984331
Q ss_pred CCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 402 SCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 402 ~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
.....+|+.....++++++++++.|+++++++.
T Consensus 351 ----~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~~~ 383 (387)
T PRK09331 351 ----GATKEFKLSTYGLTWEQVEYVADAFKEIAEKYG 383 (387)
T ss_pred ----CCceEEEEEeccCCHHHHHHHHHHHHHHHHhcC
Confidence 123457776633489999999999999887653
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=218.61 Aligned_cols=305 Identities=13% Similarity=0.188 Sum_probs=214.4
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCcc-CCCcEEEecChHHHHHHHHHhhc-----CC-CCeEEEcCCCCcChHHh--
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKF-DLNRIVVTAGATAANELLTFILA-----DP-GDALLVPTPYYPGFDRD-- 160 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~~~i~~t~G~~~ai~~~~~~l~-----~~-gd~Vl~~~p~y~~~~~~-- 160 (442)
.|+. .+...+++++++++.. +.. ++++|++|+|+++++..+++++. ++ ++.|+++.+.|+.+...
T Consensus 35 ~~~~-~~~~~l~~a~~~~~~~-----~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~ 108 (382)
T TIGR03403 35 QFGT-ATHPAIAEALDKLYKG-----INARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCA 108 (382)
T ss_pred HHHH-HHHHHHHHHHHHHHHH-----cCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHH
Confidence 4543 4678899999988863 223 67899999999999999988762 45 47899998777766544
Q ss_pred -HhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEe
Q 046900 161 -LRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSD 239 (442)
Q Consensus 161 -~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~D 239 (442)
++ ..|++++.+|++++ +.+|++.+++.+.+ +++++++++|+||||.+++ +++|.++|+++|+++++|
T Consensus 109 ~~~-~~G~~v~~v~~~~~--g~~d~~~l~~~i~~------~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~~ivD 176 (382)
T TIGR03403 109 FLE-SLGVEVTYLPINEQ--GTITAEQVREAITE------KTALVSVMWANNETGMIFP---IKEIGEICKERGVLFHTD 176 (382)
T ss_pred HHH-HCCCEEEEEecCCC--CCCCHHHHHHhccc------CCeEEEEEcccCCCccccC---HHHHHHHHHHcCCEEEEe
Confidence 34 37999999998753 46899999998865 6789999999999999999 567888888999999999
Q ss_pred ccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHH-HHHHH---H--HccccCCCcHH
Q 046900 240 EIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDK-VVTTA---R--RMSSFTLISSQ 313 (442)
Q Consensus 240 e~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~-~~~~~---~--~~~~~~~~s~~ 313 (442)
++++. +.. ...+... +.-+++.|++|.+|.+| +|+++..+.. +...+ . .....++.+.+
T Consensus 177 ~a~~~---g~~-~~~~~~~---------~~D~~~~s~~K~~gp~G--~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~ 241 (382)
T TIGR03403 177 AVQAI---GKI-PVDVQKA---------GVDFLSFSAHKFHGPKG--VGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVP 241 (382)
T ss_pred chhhc---CCC-ccCcccc---------CCCEEEEcchhhCCCCc--eEEEEECCCCCCCCcccCCCCCCCcccCCcChH
Confidence 99873 111 1222211 22267889999988778 4877664321 10111 0 01123556677
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC---ceEEEEEecCCcccccChhhHHHHHHHH
Q 046900 314 TQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGN---AGLFCWMNLSPLLEEQTREGELALWDSM 389 (442)
Q Consensus 314 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~l~~~l 389 (442)
.+.++...++ +..++++...+++++.++++.+.|.+. |+++..+. .+.++.+.++.. +..++...|
T Consensus 242 ~~~al~~al~---~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L 311 (382)
T TIGR03403 242 YIVAMGEAMR---LANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGV-------EGEAMLWDL 311 (382)
T ss_pred HHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCC-------CHHHHHHhh
Confidence 7766666664 234456677788999999999999875 77777543 123445555431 245666666
Q ss_pred HHcCcEEEeCCCCCCCC-----------------CCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 390 LHEVKLNISPGSSCHCS-----------------EPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 390 ~~~~gi~v~pg~~f~~~-----------------~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
. ++||.++.|+.|... ..+.+|+|+. ..++++++++++.|++++++.+
T Consensus 312 ~-~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~ 377 (382)
T TIGR03403 312 N-KAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLR 377 (382)
T ss_pred c-cCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4 459999987765310 1257999997 2289999999999999887754
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=220.34 Aligned_cols=290 Identities=19% Similarity=0.252 Sum_probs=202.4
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccC-CCcEEEecChHHHHHHHHHhhcC---CCCeEEEcCCCCcChH----HhHhhhcC
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFD-LNRIVVTAGATAANELLTFILAD---PGDALLVPTPYYPGFD----RDLRWRTG 166 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~-~~~i~~t~G~~~ai~~~~~~l~~---~gd~Vl~~~p~y~~~~----~~~~~~~G 166 (442)
....++|+.++++++ ++ +++|++|+|+++++.+++.++.. +||+|++++++|+... ..++ ..|
T Consensus 43 ~~~~~~~~~la~~~~--------~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~-~~g 113 (373)
T cd06453 43 DAYEAAREKVARFIN--------APSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAE-RTG 113 (373)
T ss_pred HHHHHHHHHHHHHhC--------CCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHh-hcC
Confidence 345678888888875 34 67999999999999999999987 8999999999998743 3344 379
Q ss_pred cEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 167 IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 167 ~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
++++.++.+. ++.+|++++++.+.+ ++++|++++|+||||.+.+ +++|+++|++++++|++|++|+...
T Consensus 114 ~~~~~v~~~~--~~~~d~~~l~~~l~~------~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~ 182 (373)
T cd06453 114 AKLKVVPVDD--DGQLDLEALEKLLTE------RTKLVAVTHVSNVLGTINP---VKEIGEIAHEAGVPVLVDGAQSAGH 182 (373)
T ss_pred cEEEEeecCC--CCCcCHHHHHHHhcC------CceEEEEeCcccccCCcCC---HHHHHHHHHHcCCEEEEEhhhhcCc
Confidence 9999999874 456899999999865 7889999999999999998 6678888889999999999987422
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc--------------------
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS-------------------- 306 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~-------------------- 306 (442)
. ..++... +..+++.|++|.++. .++||++++ +.+.+.+.....
T Consensus 183 ~----~~~~~~~---------~~d~~~~s~~K~~~~--~g~g~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 246 (373)
T cd06453 183 M----PVDVQDL---------GCDFLAFSGHKMLGP--TGIGVLYGK-EELLEEMPPYGGGGEMIEEVSFEETTYADLPH 246 (373)
T ss_pred e----eeecccc---------CCCEEEeccccccCC--CCcEEEEEc-hHHhhcCCCeecCCCccccccccccccCCCcc
Confidence 1 1111111 223566789999974 568999985 444444332210
Q ss_pred -c--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC--ceEEEEEecCCcccccChh
Q 046900 307 -F--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGN--AGLFCWMNLSPLLEEQTRE 380 (442)
Q Consensus 307 -~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~--~g~~~~~~~~~~~~~~~~~ 380 (442)
+ +..+.....++.+.++... +..+++++++.++.++++.+.|.+. ++++..+. .+.++++.++..
T Consensus 247 ~~~~~t~~~~~~~al~~al~~l~--~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------- 317 (373)
T cd06453 247 KFEAGTPNIAGAIGLGAAIDYLE--KIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGI------- 317 (373)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCc-------
Confidence 0 1122223333333332110 1124566677778888999999887 67766321 234666676542
Q ss_pred hHHHHHHHHHHcCcEEEeCCCCCCC------CCCCEEEEEeec-CCHHHHHHHHHHH
Q 046900 381 GELALWDSMLHEVKLNISPGSSCHC------SEPGWFRVCFAN-MSEQTLEVALKRI 430 (442)
Q Consensus 381 ~~~~l~~~l~~~~gi~v~pg~~f~~------~~~~~iRls~~~-~~~e~i~~~l~~l 430 (442)
+..++.+.|.++ ||.+.+|..+.. ..++++|+|++. .++++++++++.|
T Consensus 318 ~~~~i~~~l~~~-gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 318 HPHDVATILDQY-GIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred CHHHHHHHHHHC-CEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 256777877665 999988875421 125789999982 2889999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-25 Score=220.24 Aligned_cols=346 Identities=15% Similarity=0.135 Sum_probs=218.9
Q ss_pred CCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC
Q 046900 45 TNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120 (442)
Q Consensus 45 ~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 120 (442)
.....+|||..+ .+.++ ++.+.+.+.+.... ...|+...+..++...+++.+.+.++ .+.
T Consensus 33 ~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~------------~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~ 96 (413)
T cd00610 33 VDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAK------------LTHFSLGFFYNEPAVELAELLLALTP----EGL 96 (413)
T ss_pred CCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHh------------CcCccCcccCCHHHHHHHHHHHHhCC----CCC
Confidence 345678999876 33343 34444444433211 12344333445666666666666544 357
Q ss_pred CcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcC------------cEEEEEecCCC----CCCcC
Q 046900 121 NRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTG------------IKIVPIHCDSS----NNFQI 182 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G------------~~v~~v~~~~~----~~~~~ 182 (442)
++|++++|+++++..+++.+. .+++.|++.+++|.+.........+ .+++.+|.+.. ..+..
T Consensus 97 ~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (413)
T cd00610 97 DKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELAD 176 (413)
T ss_pred CEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHH
Confidence 899999999999999998773 5789999999999886544331122 23566665421 12445
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHh
Q 046900 183 TPQALEAAYKEAESKDMRVRGVLITNP-SNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILE 260 (442)
Q Consensus 183 d~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~ 260 (442)
|++.|++.++++ ..+++ +++++| +|++|.++ +.+.+++|.++|++|++++|+||+|..+...+..+ . ....
T Consensus 177 d~~~l~~~l~~~---~~~~~-~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~-~-~~~~- 249 (413)
T cd00610 177 DLEALEEALEEH---PEEVA-AVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMF-A-FEHF- 249 (413)
T ss_pred HHHHHHHHHhcC---CCCEE-EEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchh-h-Hhhc-
Confidence 888999888642 12444 455556 56779877 66779999999999999999999999754333211 1 1111
Q ss_pred hhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHH--HHcc--ccCCCcHHHHHHHHHHhcCchhHHHHHHHHH
Q 046900 261 ARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTA--RRMS--SFTLISSQTQYLLASMLSNKKFTENYIKTNR 336 (442)
Q Consensus 261 ~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~--~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 336 (442)
+...-+.|+||.++ .|+|+||+++ ++.+.+.+ .... ..+..+++.+.++.+.++.. ++ ....
T Consensus 250 -------~~~~d~~t~sK~l~-~g~~~g~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l---~~--~~~~ 315 (413)
T cd00610 250 -------GVEPDIVTLGKGLG-GGLPLGAVLG-REEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVL---EE--EGLL 315 (413)
T ss_pred -------CCCCCeEEEccccc-CccccEEEEE-cHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--ccHH
Confidence 11112458999998 6899999998 56666664 2222 22456777777776666421 11 2334
Q ss_pred HHHHHHHHHHHHHHHhC----CCeeecCCceEEEEEecCCcccc--cChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCE
Q 046900 337 ERLQKRYQMIIEGLRSA----GIECLKGNAGLFCWMNLSPLLEE--QTREGELALWDSMLHEVKLNISPGSSCHCSEPGW 410 (442)
Q Consensus 337 ~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~ 410 (442)
++++++.+++.+.|++. ++.......|.++|+.++..... ........+++.|+++ ||.+.|+. ..+
T Consensus 316 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gv~v~~~~------~~~ 388 (413)
T cd00610 316 ENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALER-GLLLRPSG------GNV 388 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHC-CeEEeecC------CCE
Confidence 55555566666666543 22222234567888887642100 0012356788888777 99999974 467
Q ss_pred EEEEeec-CCHHHHHHHHHHHHHHH
Q 046900 411 FRVCFAN-MSEQTLEVALKRIHNFM 434 (442)
Q Consensus 411 iRls~~~-~~~e~i~~~l~~l~~~l 434 (442)
+|++++. .+++++++++++|.+++
T Consensus 389 lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 389 IRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHhC
Confidence 9998763 38899999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-25 Score=217.54 Aligned_cols=326 Identities=15% Similarity=0.143 Sum_probs=218.0
Q ss_pred ceeeeecccccccHH-HHHHHHHhCCCCcccCCCCCCCCcccccCC-----CcchHHHHHHHHHHHHHHhCCCCccCCCc
Q 046900 49 GVIQMGLAENQVSFD-LLEEYLEQQPEASTWGKGAPGFRENALFQD-----YHGLKSFRQAMASFMEQIRGGRAKFDLNR 122 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-----~~g~~~lr~~ia~~l~~~~~~~~~~~~~~ 122 (442)
+++++++++..++++ .+.....+. . ....|.+ ..|.+++++++++++.+.+| ++.++
T Consensus 21 ~~~~l~~g~~~~~~p~~~~~~~~~~-~------------~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g----~~~~~ 83 (398)
T cd00613 21 SMSFLGSGTYKHNPPAVIKRNILEN-E------------FYTAYTPYQPEISQGRLQALFELQTMLCELTG----MDVAN 83 (398)
T ss_pred CcccccccccCCcCcHHHHHHhccc-c------------CcccCCCCChhhhhhHHHHHHHHHHHHHHHHC----CCccc
Confidence 558889888777654 344333332 1 0123544 67999999999999999876 45557
Q ss_pred EEEecC-hHHHHHHHHHhhcCC--CCeEEEcCCCCcChHHhHhhhcC----cEEEEEecCCCCCCcCCHHHHHHHHHHHH
Q 046900 123 IVVTAG-ATAANELLTFILADP--GDALLVPTPYYPGFDRDLRWRTG----IKIVPIHCDSSNNFQITPQALEAAYKEAE 195 (442)
Q Consensus 123 i~~t~G-~~~ai~~~~~~l~~~--gd~Vl~~~p~y~~~~~~~~~~~G----~~v~~v~~~~~~~~~~d~~~l~~~l~~~~ 195 (442)
++++++ ++++...+..++..+ ||.|++++|.|+.+...+.. .| ++++.++.++ ++.+|++.+++.+.+
T Consensus 84 v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~-~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~-- 158 (398)
T cd00613 84 ASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVART-RGEPLGIEVVEVPSDE--GGTVDLEALKEEVSE-- 158 (398)
T ss_pred eeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHH-hcccCCcEEEEeccCC--CCCcCHHHHHHhcCC--
Confidence 777775 445555555566666 99999999999999888774 66 8999998764 346899999998854
Q ss_pred hcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEec
Q 046900 196 SKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275 (442)
Q Consensus 196 ~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S 275 (442)
++++|++++|+ |||.+. +.+++|.++|+++|+++|+|+++..... ...... .+..+++.|
T Consensus 159 ----~t~~viv~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~~----~~~~~~---------~~~d~~~~s 218 (398)
T cd00613 159 ----EVAALMVQYPN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLTG----LKPPGE---------YGADIVVGN 218 (398)
T ss_pred ----CeEEEEEECCC-CCceec--chHHHHHHHHHhcCCEEEEEeccccccC----CCChHH---------cCCCEEEee
Confidence 78999999885 899984 4469999999999999999998763221 111111 134578899
Q ss_pred CcccCCCC----CceeEEEeecCHHHHHHHHHc-----------------------------cc--cCCCc-HHHHHHHH
Q 046900 276 LSKDLGLP----GFRVGTIYSYNDKVVTTARRM-----------------------------SS--FTLIS-SQTQYLLA 319 (442)
Q Consensus 276 ~SK~~g~~----G~RiG~i~~~~~~~~~~~~~~-----------------------------~~--~~~~s-~~~q~~~~ 319 (442)
+||.+ +| |+|+||++.+ +.+.+.+... .+ ....+ ...|.+..
T Consensus 219 ~~K~~-~p~g~Ggp~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~ 296 (398)
T cd00613 219 LQKTG-VPHGGGGPGAGFFAVK-KELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAM 296 (398)
T ss_pred ccccC-CCCCCCCCceeEEEEh-hhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHH
Confidence 99998 56 7999999985 4444432100 00 01111 22333333
Q ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEE--EEEecCCcccccChhhHHHHHHHHHHcCcEEE
Q 046900 320 SMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLF--CWMNLSPLLEEQTREGELALWDSMLHEVKLNI 397 (442)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v 397 (442)
.+.... ...+++.+++++++++++.+.|++.+... .+.+.++ ++++++.... .++.++++.|+++ ||.+
T Consensus 297 ~l~~~~---~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~v~~~~~~~~~----~~~~~~~~~L~~~-gi~~ 367 (398)
T cd00613 297 YIVYLG---PEGLKEIAERAHLNANYLAKRLKEVGGVL-PFNGPFFHEFVLRLPPLYG----IRAEDLAKALIDG-GFHA 367 (398)
T ss_pred HHHHhC---HHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCeeEEEEEEcCCcch----HHHHHHHHhhhhc-Cccc
Confidence 222211 23456778889999999999998875443 2333333 5666654100 1367888888776 9876
Q ss_pred eCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHH
Q 046900 398 SPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRI 430 (442)
Q Consensus 398 ~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l 430 (442)
.... ....+.+|+++. ..++++++++++.|
T Consensus 368 ~~~~---~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 368 PTMY---LPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred cccc---cCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 4321 123578999986 33899999998764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=212.95 Aligned_cols=309 Identities=14% Similarity=0.115 Sum_probs=223.9
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCC-CcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcCh--HHhHhhhcCcEEEE
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDL-NRIVVTAGATAANELLTFILADPGDALLVPTPYYPGF--DRDLRWRTGIKIVP 171 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~-~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~--~~~~~~~~G~~v~~ 171 (442)
.+..++++.+.+.+.+.++ +++ +.+++++++++++..++..++++||+|+++++.|+.. ...++ ..|++++.
T Consensus 38 ~~~~~~~~~~~~~l~~~~g----~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~~~~~~-~~g~~v~~ 112 (401)
T PLN02409 38 PAFPALTKELLEDVKYIFK----TKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLLWIDQMQ-RLNFDVDV 112 (401)
T ss_pred HHHHHHHHHHHHHHHHHhC----CCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHH-HcCCceEE
Confidence 3668888888888888776 444 4688899999999999999999999999999988665 35566 48999999
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
++.+.+. .+|++.+++.+++.. .++++++++++++||||.+++.+++.++++ |+++|+++|+|++++. +. .
T Consensus 113 v~~~~~~--~~~~~~l~~~l~~~~--~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~g~~~vvD~v~s~---g~-~ 183 (401)
T PLN02409 113 VESPWGQ--GADLDILKSKLRQDT--NHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQHPALLLVDGVSSI---GA-L 183 (401)
T ss_pred EECCCCC--CCCHHHHHHHHhhCc--CCCccEEEEEeecccccccCCHHHHHHHHh-hhccCcEEEEEccccc---CC-c
Confidence 9987533 378999999987410 026889999999999999999777766666 9999999999999873 22 1
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc------------------c--cCCCc
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS------------------S--FTLIS 311 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~------------------~--~~~~s 311 (442)
...+..+ +..+++.|.+|.++.| .++||++++ +.+.+.+.... . .++.+
T Consensus 184 ~id~~~~---------~~D~~~~s~~K~l~~P-~G~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~ 252 (401)
T PLN02409 184 DFRMDEW---------GVDVALTGSQKALSLP-TGLGIVCAS-PKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPS 252 (401)
T ss_pred ccccccc---------CccEEEEcCccccCcC-CCcceeEEC-HHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCcc
Confidence 1122212 2236677889998643 379999985 44444433211 0 11233
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC----ceEEEEEecCCcccccChhhHHHHHH
Q 046900 312 SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN----AGLFCWMNLSPLLEEQTREGELALWD 387 (442)
Q Consensus 312 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~l~~ 387 (442)
...+.++.+.++.. .+..++..++++++.++++.+.|++.|+++..+. .+..+|+.+|...+ ..++..
T Consensus 253 ~~~~~al~~al~~~--~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~~~------~~~l~~ 324 (401)
T PLN02409 253 IQLLYGLRAALDLI--FEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEGID------SAEIVK 324 (401)
T ss_pred HHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCCCC------HHHHHH
Confidence 34455555555421 1334677788899999999999988888876542 33456777775432 567888
Q ss_pred HHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 388 SMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 388 ~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
.+++++||.+.+|.. ....+.|||+.. ..+.+++..+++.|++++.+..
T Consensus 325 ~l~~~~~i~i~~G~~--~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 325 NAWKKYNLSLGLGLN--KVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred HHHHhCCEEEEcCCC--cccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 888888999998864 223578999975 4489999999999999998765
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=212.40 Aligned_cols=298 Identities=15% Similarity=0.126 Sum_probs=205.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhhcCcEEEEEec
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTGIKIVPIHC 174 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~ 174 (442)
..+|++.+|++++ .+..++++++++++..++.++.. +||.|++....|......++. .|.++..++.
T Consensus 92 ~~~le~~la~~~g----------~~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~-~g~~~~~~~~ 160 (406)
T PRK13393 92 HVLLEAELADLHG----------KEAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRH-SRAEKRIFRH 160 (406)
T ss_pred HHHHHHHHHHHhC----------CCcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHH-cCCeEEEeCC
Confidence 4667777777653 24555555556788888887765 788888777788877777774 7888777663
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s 254 (442)
.|++.+++.++... ..++++|++++++||+|.+.+ +++|.++|+++++++|+||+|+...++.. ...
T Consensus 161 -------~d~~~l~~~l~~~~--~~~~~~v~~~~v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~-G~g 227 (406)
T PRK13393 161 -------NDPADLERKLSDLD--PHRPKLVAFESVYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPR-GGG 227 (406)
T ss_pred -------CCHHHHHHHHHhcc--CCCCEEEEEcCCCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCC-CCc
Confidence 36788888776421 125678899999999999999 77888889999999999999985444322 112
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc----CCCcHHHHHHHHHHhcCchhHHH
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF----TLISSQTQYLLASMLSNKKFTEN 330 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~ 330 (442)
+..... . ..+..++++||||++|++| ||+++ ++.+.+.++..... ...++..+.++.+.++.. ++
T Consensus 228 ~~~~~~---~-~~~~~i~~~tlsKa~g~~G---G~~~~-~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~---~~ 296 (406)
T PRK13393 228 IAEREG---L-ADRLTIIEGTLAKAFGVMG---GYITG-SAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHL---KA 296 (406)
T ss_pred hhhhcC---C-CCCCeEEEEeCchhhcccC---ceeeC-CHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHH---hh
Confidence 221111 0 1234677899999999888 99987 56666666654322 234555666666666532 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC-CCCC
Q 046900 331 YIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC-SEPG 409 (442)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~-~~~~ 409 (442)
. ...++++.++++++.+.|++.|+++.++.+++ +.+.+... ..+.++++.|++++||.+.++..... .+..
T Consensus 297 ~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~i-~~v~~~~~------~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~ 368 (406)
T PRK13393 297 S-SAERERHQDRVARLRARLDKAGIPHLPNPSHI-VPVMVGDP------VLCKQISDELLDRYGIYVQPINYPTVPRGTE 368 (406)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCe-EEEEeCCH------HHHHHHHHHHHHhCCEEEEeECCCCCCCCCc
Confidence 2 12345677888999999988888777666664 44444321 13577888888766999998654322 2346
Q ss_pred EEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 410 WFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 410 ~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
++||++. ..+++++++++++|.+++.+.
T Consensus 369 ~iRis~~~~~t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 369 RLRITPSPLHTDADIEHLVQALSEIWARL 397 (406)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 8999987 338999999999999987653
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=214.32 Aligned_cols=345 Identities=14% Similarity=0.124 Sum_probs=212.9
Q ss_pred CceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCccccc-CCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALF-QDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y-~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.+.|+|..++|++++.. .+.+...... .+..| .....| ....-...+.+...+.+.+.+| ++..+|+++
T Consensus 25 ~~~~~l~~~~n~~~~~v-~~a~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~e~~~~~~la~~~g----~~~~~i~~~ 94 (416)
T PRK00011 25 EEHIELIASENFVSPAV-MEAQGSVLTN-KYAEG----YPGKRYYGGCEYVDVVEQLAIDRAKELFG----AEYANVQPH 94 (416)
T ss_pred hcCeeeecccCcCCHHH-HHHHhchhhc-ccccC----CCCccccccchHHHHHHHHHHHHHHHHhC----CCceeeecC
Confidence 45689999999965544 3333222100 00000 001112 1111122333322334444444 455667666
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh-----HhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCce
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRD-----LRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~-----~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (442)
+| ++++..++.+++++||+|+++.|+|..+... +. ..|++++.++++.+ ++.+|++++++.+++. ++
T Consensus 95 sg-t~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~~-----~~ 166 (416)
T PRK00011 95 SG-SQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFS-GKLYNVVSYGVDEE-TGLIDYDEVEKLALEH-----KP 166 (416)
T ss_pred Cc-hHHHHHHHHHhcCCCCEEEEeccccCCccccccccccc-cceeeEeecCcCcc-cCCcCHHHHHHHHHhc-----CC
Confidence 65 6789999999999999999999999865321 12 24678888887642 4679999999998742 67
Q ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcC-CCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccC
Q 046900 202 RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGS-AFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDL 280 (442)
Q Consensus 202 ~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~-~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~ 280 (442)
+++++++++|| ...+ +++|+++|+++|+++|+|++|... .+.+.....+. ...++++|+||++
T Consensus 167 k~v~~~~~~~~--~~~~---~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-----------~~di~~~S~~K~l 230 (416)
T PRK00011 167 KLIIAGASAYS--RPID---FKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-----------HADVVTTTTHKTL 230 (416)
T ss_pred CEEEECCCcCC--CccC---HHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-----------CCcEEEecCCcCC
Confidence 88888766655 3444 788899999999999999998632 21111111111 1126789999976
Q ss_pred CCCCceeEEEeecCHHHHHHHHHccccCCCc---HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Q 046900 281 GLPGFRVGTIYSYNDKVVTTARRMSSFTLIS---SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIEC 357 (442)
Q Consensus 281 g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s---~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 357 (442)
+|.|.||++++++.+.+.++.....+..+ ...+.++...+. ....+++++..++++++++++.+.|++.|+++
T Consensus 231 --~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 306 (416)
T PRK00011 231 --RGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFK--EALEPEFKEYAQQVVKNAKALAEALAERGFRV 306 (416)
T ss_pred --CCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 78999999996667777776544432222 112222111111 12233457778889999999999999888877
Q ss_pred ec-CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCC-CC---CCCCCEEEEEee-----cCCHHHHHHHH
Q 046900 358 LK-GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSS-CH---CSEPGWFRVCFA-----NMSEQTLEVAL 427 (442)
Q Consensus 358 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~-f~---~~~~~~iRls~~-----~~~~e~i~~~l 427 (442)
.. ...++++|+.+++... +..++.+.|. ++||.+..+.. +. +..+..+|++.. .++++++++++
T Consensus 307 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~~L~-~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~ 380 (416)
T PRK00011 307 VSGGTDNHLVLVDLRSKGL-----TGKEAEAALE-EANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIA 380 (416)
T ss_pred eecCCCCeEEEEeCcccCC-----CHHHHHHHHH-HcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHH
Confidence 54 1224788998853210 2456666664 45999974321 11 112356999641 34789999999
Q ss_pred HHHHHHHHH
Q 046900 428 KRIHNFMQK 436 (442)
Q Consensus 428 ~~l~~~l~~ 436 (442)
+.|++++..
T Consensus 381 ~~l~~~~~~ 389 (416)
T PRK00011 381 ELIADVLDN 389 (416)
T ss_pred HHHHHHHhc
Confidence 999988664
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-25 Score=215.05 Aligned_cols=296 Identities=14% Similarity=0.159 Sum_probs=204.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc---CCCCeEEEcCCCCcChHHhHhh--hcCcEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA---DPGDALLVPTPYYPGFDRDLRW--RTGIKIVP 171 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~---~~gd~Vl~~~p~y~~~~~~~~~--~~G~~v~~ 171 (442)
+.++|+.++++++ +++++|++|+|+++++..++.++. .+||.|++....|+.+...+.. ..|++++.
T Consensus 44 ~~~~r~~la~~~g--------~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~ 115 (379)
T TIGR03402 44 VEEAREQVAKLLG--------AEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTY 115 (379)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEE
Confidence 4566667777664 568899999999999999888763 4568999999888776543221 26999999
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
+|++++ +.+|++.+++.+++ +++++++++++||||.+++ +++|.++|+++|+++++|++++. +..
T Consensus 116 v~~~~~--g~~~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~~~~~----g~~ 180 (379)
T TIGR03402 116 LPVDEE--GRLDLEELRAAITD------DTALVSVMWANNETGTIFP---IEEIGEIAKERGALFHTDAVQAV----GKI 180 (379)
T ss_pred EccCCC--CcCCHHHHHHhcCC------CcEEEEEEcccCCeeeccc---HHHHHHHHHHcCCEEEEECcccc----ccc
Confidence 998653 46899999998864 7889999999999999999 56788889999999999999973 222
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHH-HH-----HHccccCCCcHHHHHHHHHHhcCc
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVT-TA-----RRMSSFTLISSQTQYLLASMLSNK 325 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~-~~-----~~~~~~~~~s~~~q~~~~~~l~~~ 325 (442)
...+... +--+++.|.+|.+|.+| +|+++..+..... .+ ......+..+.+...++.+.++
T Consensus 181 ~~~~~~~---------~~D~~~~s~~K~~gp~G--~g~l~v~~~~~~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~-- 247 (379)
T TIGR03402 181 PIDLKEM---------NIDMLSLSGHKLHGPKG--VGALYIRKGTRFRPLLRGGHQERGRRAGTENVPGIVGLGKAAE-- 247 (379)
T ss_pred ccCcccC---------CCCEEEEcHHHcCCCCc--eEEEEECCCCCCCCcccCCccCCCcCCCCccHHHHHHHHHHHH--
Confidence 2222222 22366778889777556 7888774332100 00 0001123334444444444443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeecCC-----ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe
Q 046900 326 KFTENYIKTNRERLQKRYQMIIEGLRS-A-GIECLKGN-----AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS 398 (442)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~ 398 (442)
+..++++...++.++.++++.+.|.+ . ++++..+. +.+.+|+.... ..++...| +++||.+.
T Consensus 248 -~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l-~~~gI~v~ 316 (379)
T TIGR03402 248 -LATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIE---------GEAILLLL-DMEGICAS 316 (379)
T ss_pred -HHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCC---------HHHHHHhh-ccCCEEEE
Confidence 33445667778888888999998875 4 66665432 33455554322 45677766 45599999
Q ss_pred CCCCCCCC-----------------CCCEEEEEeec-CCHHHHHHHHHHHHHHHHHHHh
Q 046900 399 PGSSCHCS-----------------EPGWFRVCFAN-MSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 399 pg~~f~~~-----------------~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
+|..|... ..+.+|+|++. -+++|++++++.|+++++++++
T Consensus 317 ~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 317 SGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred chhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99877532 13689999973 2899999999999999887654
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-24 Score=207.49 Aligned_cols=298 Identities=13% Similarity=0.149 Sum_probs=199.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc------CCCCeEEEcCCCCcChHHhHhhhcCcEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA------DPGDALLVPTPYYPGFDRDLRWRTGIKI 169 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~------~~gd~Vl~~~p~y~~~~~~~~~~~G~~v 169 (442)
|..++.+.+.+.+.+.+| ++++++++++|+++++..++.++. ++||.|++++++|..+...++. .|+++
T Consensus 56 ~~~~~~~~~~~~la~~~g----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~-~G~~~ 130 (373)
T TIGR03812 56 GTKKIEEEVVGSLGNLLH----LPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEM-LGLEL 130 (373)
T ss_pred cHHHHHHHHHHHHHHHhC----CCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHH-cCCeE
Confidence 334444444444444433 567789999999999988776654 4679999999999999888885 89999
Q ss_pred EEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC
Q 046900 170 VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS 249 (442)
Q Consensus 170 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~ 249 (442)
+.++.++ ++.+|++++++.+.+ ++..++++.|+||||.+.+ +++|.++|+++++++|+|++|+.+...-
T Consensus 131 ~~v~~~~--~~~~d~~~l~~~l~~------~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~ 199 (373)
T TIGR03812 131 RYAPLDE--DYTVDVKDVEDLIDD------NTIGIVGIAGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPF 199 (373)
T ss_pred EEEeeCC--CCCcCHHHHHHHHhh------CcEEEEEECCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHH
Confidence 9999864 467899999999875 4555566668999999987 7777888889999999999998543110
Q ss_pred CCc-ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccC----------CCcHHHHHHH
Q 046900 250 SEF-VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT----------LISSQTQYLL 318 (442)
Q Consensus 250 ~~~-~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~----------~~s~~~q~~~ 318 (442)
... .....++-. ...--.+..|.+| |++++.|+|+++..++.+.+.++....+. ..+.....++
T Consensus 200 ~~~~~~~~~~d~~----~~~~d~~~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~ 274 (373)
T TIGR03812 200 LKKGYNPPPFDFS----LPGVQSITIDPHK-MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAAT 274 (373)
T ss_pred HhcCCCCCCcccc----CCCCCEEEECccc-cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHH
Confidence 000 000000000 0011123457789 66688889877654555555543222211 1122334444
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCe-eecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEE
Q 046900 319 ASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIE-CLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNI 397 (442)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v 397 (442)
...++.. .+..+++..+++.+.++++.+.|++.|+. +..+..+ ++.+.++. ..++.+.|.++ ||.+
T Consensus 275 ~~~l~~l--~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~v~~~~~~---------~~~v~~~L~~~-gi~v 341 (373)
T TIGR03812 275 YAVIKYL--GREGYRKIVAECMENTRYLVEELKKIGFEPVIEPVLN-IVAFEVDD---------PEEVRKKLRDR-GWYV 341 (373)
T ss_pred HHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCCCce-EEEEEeCC---------HHHHHHHHHHC-Ccee
Confidence 4444421 13445677888999999999999988765 3444444 56566653 34678888766 9999
Q ss_pred eCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHH
Q 046900 398 SPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHN 432 (442)
Q Consensus 398 ~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~ 432 (442)
.++. .++++|+++.. .++++++++++.|++
T Consensus 342 ~~~~-----~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 342 SVTR-----CPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred ccCC-----CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 8652 25689999972 278999999999875
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-25 Score=213.53 Aligned_cols=289 Identities=16% Similarity=0.237 Sum_probs=200.8
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH----HhHhh
Q 046900 88 NALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD----RDLRW 163 (442)
Q Consensus 88 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~ 163 (442)
..+|+.+ -..+|++++|++.+ . +..++++|+++++..++ .++++||+|+++.|.|+... ..+.
T Consensus 46 y~r~~~p-t~~~le~~la~l~g--------~--~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~- 112 (366)
T PRK08247 46 YSRTGNP-TRGVLEQAIADLEG--------G--DQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWK- 112 (366)
T ss_pred ccCCCCc-hHHHHHHHHHHHhC--------C--CcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhh-
Confidence 3456554 46889999999875 2 23477888889999876 57789999999999998743 3344
Q ss_pred hcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCC
Q 046900 164 RTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYS 243 (442)
Q Consensus 164 ~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~ 243 (442)
..|++++.++. .|++.+++++++ ++++|++++|+||+|. ..++++|+++|+++|+++|+|++|.
T Consensus 113 ~~G~~v~~vd~-------~d~~~l~~~i~~------~tklv~le~P~NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~ 176 (366)
T PRK08247 113 KWNVRFVYVNT-------ASLKAIEQAITP------NTKAIFIETPTNPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFY 176 (366)
T ss_pred ccCceEEEECC-------CCHHHHHHhccc------CceEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCc
Confidence 38999988874 378999988865 7899999999999865 5669999999999999999999996
Q ss_pred cCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCC-CCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHH
Q 046900 244 GSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGL-PGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLAS 320 (442)
Q Consensus 244 ~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~-~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~ 320 (442)
...... ++ . .+..++++|+||.++- ++++.||++++++.+.+.+...... ..+++..|.++..
T Consensus 177 ~~~~~~----p~-~---------~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~ 242 (366)
T PRK08247 177 TPVLQR----PL-E---------EGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIR 242 (366)
T ss_pred cccccC----ch-h---------cCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHh
Confidence 432211 11 1 1445889999999863 3579999998656666655433322 3456777777776
Q ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-e-ecCCceEEEEEecCCcccccChhhHHHHHH---------H
Q 046900 321 MLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIE-C-LKGNAGLFCWMNLSPLLEEQTREGELALWD---------S 388 (442)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~---------~ 388 (442)
.++. +....++.+++++.+.+.|+++ ++. + .++.||+|.| ++... +....+.+ .
T Consensus 243 ~l~t-------l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~~~------~~~~~~~~~l~~~~~~~s 308 (366)
T PRK08247 243 GMKT-------LALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQDE------EWVNPFLKSLKLITFAES 308 (366)
T ss_pred ccCc-------HHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEE-EECCH------HHHHHHHHcCCcceEccC
Confidence 6652 2334445688999999999987 665 3 3447998887 55421 11222222 2
Q ss_pred HHHcCcEEEeCCCCCCCC-----------CCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 389 MLHEVKLNISPGSSCHCS-----------EPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 389 l~~~~gi~v~pg~~f~~~-----------~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
|.....+.+.|++.+... .++.+|||++- |+.+.+++.|.+++.+
T Consensus 309 lg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl---E~~~dl~~dl~~al~~ 364 (366)
T PRK08247 309 LGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGI---ENVEDLIADLKQAFKQ 364 (366)
T ss_pred CCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 222336777788665321 24679999996 4577777777777764
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-24 Score=211.76 Aligned_cols=274 Identities=16% Similarity=0.208 Sum_probs=190.5
Q ss_pred CCcEEEecChHHHHHHHHHhhc--------CCCCeEEEcCCCCcChHH-hHhhhcC------------cEEEEEecCCCC
Q 046900 120 LNRIVVTAGATAANELLTFILA--------DPGDALLVPTPYYPGFDR-DLRWRTG------------IKIVPIHCDSSN 178 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~--------~~gd~Vl~~~p~y~~~~~-~~~~~~G------------~~v~~v~~~~~~ 178 (442)
.+.+++++++++++..+++... ...+.|+..+-+|.+... ++.. .| .+++.++.
T Consensus 97 ~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---- 171 (403)
T PRK05093 97 AERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSV-GGQPKYSDGFGPKPADITHVPF---- 171 (403)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhh-cCChhhhhcCCCCCCCcEEeCC----
Confidence 4689999999999999988651 123567777777766432 2221 11 11222221
Q ss_pred CCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC--CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHH
Q 046900 179 NFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI--QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIA 256 (442)
Q Consensus 179 ~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~--~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~ 256 (442)
-|++.+++.+.+ ++++|+++ |.||+|.++ +.+.+++|+++|++|++++|+||+|.++.+++.. .+..
T Consensus 172 ---~d~~~l~~~l~~------~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~-~~~~ 240 (403)
T PRK05093 172 ---NDLAAVKAVIDD------HTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDL-FAYM 240 (403)
T ss_pred ---CCHHHHHHHhcC------CeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccc-hhhh
Confidence 278888888753 67666665 888888765 8899999999999999999999999987776642 2211
Q ss_pred HHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc-c-ccCCCcHHHHHHHHHHhcCchhHHHHHHH
Q 046900 257 EILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM-S-SFTLISSQTQYLLASMLSNKKFTENYIKT 334 (442)
Q Consensus 257 ~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~-~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 334 (442)
.... .++ +.||||+++ +|+|+||+++ ++.+.+.+... . ..+..+++.|.++.+.|+.. . -.+
T Consensus 241 ~~~~-----~pd----i~s~sK~l~-~G~rig~vv~-~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~---~--~~~ 304 (403)
T PRK05093 241 HYGV-----TPD----ILTSAKALG-GGFPIGAMLT-TAEIASHFKVGTHGSTYGGNPLACAVAEAVFDII---N--TPE 304 (403)
T ss_pred hcCC-----CCC----EEEeccccc-CCcceEEEEE-cHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH---h--hcc
Confidence 1110 112 569999998 9999999999 45666665432 2 23456888999888866421 1 123
Q ss_pred HHHHHHHHHHHHHHHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCE
Q 046900 335 NRERLQKRYQMIIEGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGW 410 (442)
Q Consensus 335 ~~~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~ 410 (442)
.++.++++++++.+.|++.+ +....+..|+++|+.++.... ..+.+++..|+++ ||.+.|+ +.++
T Consensus 305 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~----~~~~~~~~~l~~~-Gv~v~~~------g~~~ 373 (403)
T PRK05093 305 VLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYK----GRARDFLNAAAEE-GVMVLVA------GPDV 373 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcch----hHHHHHHHHHHHC-CeEEecC------CCCE
Confidence 45778888889998888753 222345678999999864210 1356888888887 9999874 2468
Q ss_pred EEEEeec-CCHHHHHHHHHHHHHHHHH
Q 046900 411 FRVCFAN-MSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 411 iRls~~~-~~~e~i~~~l~~l~~~l~~ 436 (442)
+|++++. ++++++++++++|.+++.+
T Consensus 374 lRl~~~~~~~~~~i~~~~~~l~~~l~~ 400 (403)
T PRK05093 374 LRFAPSLVIEEADIDEGLARFEKAVAK 400 (403)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9997653 3899999999999998865
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-23 Score=206.70 Aligned_cols=299 Identities=14% Similarity=0.167 Sum_probs=206.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC----CCCeEEEcCCCCcChHHhHhhhcCcEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD----PGDALLVPTPYYPGFDRDLRWRTGIKIVP 171 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~----~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~ 171 (442)
+..++.+.+.+.+.+.+| ++++++++++|+++++..++.++.. ++|.|++.++.|..+...++. .|++++.
T Consensus 56 ~~~~~~~~~~~~la~~~g----~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~~-~g~~~~~ 130 (371)
T PRK13520 56 GTAKLEEEAVEMLGELLH----LPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADM-LGVELRR 130 (371)
T ss_pred cHHHHHHHHHHHHHHHhC----CCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHHH-cCceEEE
Confidence 344444455555555444 4566889999999999998877644 578999999999998888874 8999999
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
+|.++ ++.+|++.|++.+.+ ++++|+++.++||||.+.+ +++|.++|+++|+++++|++|+.+...-..
T Consensus 131 v~~~~--~~~~d~~~l~~~i~~------~~~~vi~~~~~~~tG~~~~---l~~I~~l~~~~g~~livD~a~~~~~~~~~~ 199 (371)
T PRK13520 131 APLDD--DYRVDVKAVEDLIDD------NTIGIVGIAGTTELGQVDP---IPELSKIALENGIFLHVDAAFGGFVIPFLD 199 (371)
T ss_pred ecCCC--CCcCCHHHHHHHHhh------CCEEEEEEcCCcCCcccCC---HHHHHHHHHHcCCCEEEEecchhHHHHhhc
Confidence 98864 456899999999975 6777888889999999988 778888898999999999999864421000
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccC----------CCcHHHHHHHHHH
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT----------LISSQTQYLLASM 321 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~----------~~s~~~q~~~~~~ 321 (442)
......... .+-..+..|.+| ++++|.++|+++..++.+.+.+.....+. +.+.....++...
T Consensus 200 ~~~~~~~~~------~~vd~~~~s~~K-~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a 272 (371)
T PRK13520 200 DPPNFDFSL------PGVDSITIDPHK-MGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAV 272 (371)
T ss_pred CCCCccccC------CCCceEEECCcc-ccCccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHH
Confidence 000000000 112234457788 45678899988876665555543211111 1122333444444
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCe-eecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCC
Q 046900 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIE-CLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPG 400 (442)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg 400 (442)
++... ...+++.+++..+.++++.+.|++.|++ +..+..+ ++.++++. ..++.+.|.++ ||.+.++
T Consensus 273 l~~l~--~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~v~~~~~~---------~~~v~~~L~~~-gi~v~~~ 339 (371)
T PRK13520 273 MKYLG--REGYRKVVERCMENTRWLAEELKERGFEPVIEPVLN-IVAFDDPN---------PDEVREKLRER-GWRVSVT 339 (371)
T ss_pred Hhhhc--HhHHHHHHHHHHHHHHHHHHHHHhCCCEEecCCCce-EEEEecCC---------HHHHHHHHHHC-CceeccC
Confidence 43211 2234667788888899999999888888 5555555 55566652 56788888776 9999875
Q ss_pred CCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHHHH
Q 046900 401 SSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 401 ~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~ 435 (442)
. .++++|+|+.. .++++++++++.|+++++
T Consensus 340 ~-----~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 340 R-----CPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred C-----CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 3 24679999862 289999999999998764
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-24 Score=208.19 Aligned_cols=333 Identities=14% Similarity=0.151 Sum_probs=215.0
Q ss_pred CCCCCceeeeecccc--cc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLAEN--QV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+||+..+.. .+ .++.+.+.+.+..+.. ..+ ......++++++++++.+..+
T Consensus 25 d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~------------~~~-~~~~~~~~~~~la~~l~~~~~------ 85 (377)
T PRK02936 25 DNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDI------------WHV-SNLFTNSLQEEVASLLAENSA------ 85 (377)
T ss_pred eCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhc------------ccc-ccccCCHHHHHHHHHHHhcCC------
Confidence 344567889877642 23 3344444444432210 011 112346899999999986422
Q ss_pred CCcEEEecChHHHHHHHHHhhc-CCC-CeEEEcCCCCcChHH-hHhhhcCcEEE---EEecCCCCCC--cCCHHHHHHHH
Q 046900 120 LNRIVVTAGATAANELLTFILA-DPG-DALLVPTPYYPGFDR-DLRWRTGIKIV---PIHCDSSNNF--QITPQALEAAY 191 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~-~~g-d~Vl~~~p~y~~~~~-~~~~~~G~~v~---~v~~~~~~~~--~~d~~~l~~~l 191 (442)
.+.+++++++++++..+++... .+| +.|++.+++|.+... .+.. .|.... ..|+.++..+ .-|++.+++.+
T Consensus 86 ~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 164 (377)
T PRK02936 86 GDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSA-TGQEKIKEGFGPLLPGFTHVPFNDIKALKEVM 164 (377)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhc-cCCccccccCCCCCCCceEeCCCCHHHHHHhc
Confidence 3589999999999999988542 234 679999998876432 2221 222110 1111110000 01688898887
Q ss_pred HHHHhcCCceeEEEEeCCCCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcE
Q 046900 192 KEAESKDMRVRGVLITNPSNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERV 270 (442)
Q Consensus 192 ~~~~~~~~~~~~v~l~~P~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~v 270 (442)
.+ +++++++..+++++|.. .+.+.+++|.++|++||+++|+||+|.++.+.+.. .+.....- ...
T Consensus 165 ~~------~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~-~~~~~~~~------~~d- 230 (377)
T PRK02936 165 NE------EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTL-FAYEQFGL------DPD- 230 (377)
T ss_pred cC------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchh-hHHHhhCC------CCc-
Confidence 53 68888888889999976 57889999999999999999999999887665532 12211111 122
Q ss_pred EEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH
Q 046900 271 HIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIE 348 (442)
Q Consensus 271 i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 348 (442)
+.+|||+++ +|+|+||+++ ++.+.+.+.... ..+..+++.|.++.++++.... ....+.++++.+++.+
T Consensus 231 --i~t~sK~l~-~G~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-----~~~~~~~~~~~~~l~~ 301 (377)
T PRK02936 231 --IVTVAKGLG-NGIPVGAMIG-KKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ-----PSFLEEVQEKGEYFLQ 301 (377)
T ss_pred --EEEEccccc-CCCccEEEEE-cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHH
Confidence 237999999 9999999998 566766664322 2245688999999888864321 1233455566666666
Q ss_pred HHHhC--CCeee--cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHH
Q 046900 349 GLRSA--GIECL--KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTL 423 (442)
Q Consensus 349 ~L~~~--g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i 423 (442)
.|++. ++... ....|+++|++++.. ...+...|.++ ||.+.|+. .+++|+++. ..+++++
T Consensus 302 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~--------~~~~~~~l~~~-gv~v~~~g------~~~lRi~p~~~~~~~~i 366 (377)
T PRK02936 302 KLQEELEHLECVKNIRGKGLMIGIECTEE--------VAPVIEQLREE-GLLVLSAG------PNVIRLLPPLVVTKEEL 366 (377)
T ss_pred HHHHHHhhCCcEEeEeecceEEEEEecch--------HHHHHHHHHHC-CeEEecCC------CCEEEEECCcccCHHHH
Confidence 66542 22221 123568999998752 45677776555 99998842 468999963 4489999
Q ss_pred HHHHHHHHHHH
Q 046900 424 EVALKRIHNFM 434 (442)
Q Consensus 424 ~~~l~~l~~~l 434 (442)
++++++|.+++
T Consensus 367 ~~~i~~l~~~~ 377 (377)
T PRK02936 367 DQAVYLLKKVL 377 (377)
T ss_pred HHHHHHHHHhC
Confidence 99999998763
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=209.45 Aligned_cols=295 Identities=16% Similarity=0.206 Sum_probs=202.3
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccC-CCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH----hHhhhcCcEE
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFD-LNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR----DLRWRTGIKI 169 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~-~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~~G~~v 169 (442)
.+..++|+.++++++ ++ .++|++|+|+++++..++.+++++||+|+++.+.|+.+.. .++ ..|+++
T Consensus 44 ~~~~~~~~~la~~~~--------~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-~~g~~~ 114 (376)
T TIGR01977 44 REVEETRQLLAKLFN--------APSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKE-QIGVEI 114 (376)
T ss_pred HHHHHHHHHHHHHhC--------cCCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHH-HcCcEE
Confidence 456788888888875 33 4589999999999999999999999999999999987653 333 369999
Q ss_pred EEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC
Q 046900 170 VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS 249 (442)
Q Consensus 170 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~ 249 (442)
+.++.+. ++.+|++++++.+++ +++++++++|+||||.+++ +++|.++|+++|+++|+|++++....
T Consensus 115 ~~v~~~~--~~~~d~~~l~~~~~~------~~~~v~~~~~~n~tG~~~~---~~~i~~l~~~~~~~livD~a~~~g~~-- 181 (376)
T TIGR01977 115 TIVKCDN--EGLISPERIKRAIKT------NTKLIVVSHASNVTGTILP---IEEIGELAQENGIFFILDAAQTAGVI-- 181 (376)
T ss_pred EEEecCC--CCCcCHHHHHHhcCC------CCeEEEEECCCCCccccCC---HHHHHHHHHHcCCEEEEEhhhccCcc--
Confidence 9998864 456899999998864 7889999999999999999 56778889999999999999974221
Q ss_pred CCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc------------------cccCCCc
Q 046900 250 SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM------------------SSFTLIS 311 (442)
Q Consensus 250 ~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~------------------~~~~~~s 311 (442)
...+... +.-+++.|++|.++.|. .+|.++..+......+... ...++.+
T Consensus 182 --~~~~~~~---------~~D~~~~s~~K~l~~p~-g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~ 249 (376)
T TIGR01977 182 --PIDMTEL---------AIDMLAFTGHKGLLGPQ-GTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLN 249 (376)
T ss_pred --CCCchhc---------CCCEEEecccccccCCC-CceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCC
Confidence 1122111 23367889999875332 3576665443311110000 0011223
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC----ceEEEEEecCCcccccChhhHHHHH
Q 046900 312 SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGN----AGLFCWMNLSPLLEEQTREGELALW 386 (442)
Q Consensus 312 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~l~ 386 (442)
.+...++.+.++. +.+.-.+..+++.++..+++.+.|.+. |+++..+. .+..+++.++.. +..++.
T Consensus 250 ~~~~~a~~~al~~--~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~ 320 (376)
T TIGR01977 250 TPGIAGLNAGIKF--IEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI-------DSEEVA 320 (376)
T ss_pred HHHHHHHHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC-------CHHHHH
Confidence 3333333333331 111123456677778888888888765 67665431 234666776542 245777
Q ss_pred HHHHHcCcEEEeCCCCCCC--------CCCCEEEEEee-cCCHHHHHHHHHHHHH
Q 046900 387 DSMLHEVKLNISPGSSCHC--------SEPGWFRVCFA-NMSEQTLEVALKRIHN 432 (442)
Q Consensus 387 ~~l~~~~gi~v~pg~~f~~--------~~~~~iRls~~-~~~~e~i~~~l~~l~~ 432 (442)
+.|.+++||.+.+|..+.. ...+.||+++. ..++++++.++++|++
T Consensus 321 ~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 321 DILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred HHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 7876666999999876542 23578999987 3389999999999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-23 Score=201.99 Aligned_cols=316 Identities=14% Similarity=0.115 Sum_probs=204.8
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEE
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKI 169 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v 169 (442)
.|+...++.+|++++|++++. .+.+++++|.++.. .++.+++++||.|+++.+.|..+...+.. .++++
T Consensus 38 ~yg~~~~~~~LE~~lA~~~g~---------e~al~~~sG~~a~~-~~i~~l~~~GD~Vl~~~~~h~s~~~~~~l-~~~~~ 106 (392)
T PLN03227 38 FYGTIDAHLELEQCMAEFLGT---------ESAILYSDGASTTS-STVAAFAKRGDLLVVDRGVNEALLVGVSL-SRANV 106 (392)
T ss_pred ccCChHHHHHHHHHHHHHhCC---------CcEEEecCcHHHHH-HHHHHhCCCCCEEEEeccccHHHHHHHHH-cCCeE
Confidence 487777889999999999861 36677777766666 66677899999999999999998887764 77887
Q ss_pred EEEecCCCCCCcCCHHHHHHHHHHHHh--------cCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEecc
Q 046900 170 VPIHCDSSNNFQITPQALEAAYKEAES--------KDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEI 241 (442)
Q Consensus 170 ~~v~~~~~~~~~~d~~~l~~~l~~~~~--------~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~ 241 (442)
+.++.. |++.+++.++.... ...++++|++.+|+||+|.+.+ ++++.++|++||+++|+||+
T Consensus 107 ~~~~~~-------d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~ 176 (392)
T PLN03227 107 RWFRHN-------DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAP---LKELVALKEEFHYRLILDES 176 (392)
T ss_pred EEeCCC-------CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccC---HHHHHHHHHHcCCEEEEECc
Confidence 777643 34555554443321 1235788888889999999999 77889999999999999999
Q ss_pred CCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc---ccCC-CcHHHHHH
Q 046900 242 YSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS---SFTL-ISSQTQYL 317 (442)
Q Consensus 242 y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~---~~~~-~s~~~q~~ 317 (442)
|+ +...+.......+...- ....+..+++.|+||.+| .+.|++++ ++.+.+.++... .++. .++..+.+
T Consensus 177 ~~-~g~~g~~G~g~~~~~g~--~p~~~~Div~~slsk~~g---~~gg~v~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~a 249 (392)
T PLN03227 177 FS-FGTLGKSGRGSLEHAGL--KPMVHAEIVTFSLENAFG---SVGGMTVG-SEEVVDHQRLSGSGYCFSASAPPFLAKA 249 (392)
T ss_pred cc-ccccCCCCCcHHHHcCC--CCCCCceEEEeechhhhh---ccCcEEec-CHHHHHHHHHhCcCccccCCCCHHHHHH
Confidence 98 33223221222222110 001244688899999876 34588887 556665554322 2222 23545555
Q ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeee----------cCCceEEEEEecCCcccccCh---hhHHH
Q 046900 318 LASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECL----------KGNAGLFCWMNLSPLLEEQTR---EGELA 384 (442)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~----------~~~~g~~~~~~~~~~~~~~~~---~~~~~ 384 (442)
+...+.... + ..+.+++++++.+++.+.|++.++... ....+.++.+.+.+....... ....+
T Consensus 250 a~~al~~~~---~-~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 325 (392)
T PLN03227 250 DATATAGEL---A-GPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQ 325 (392)
T ss_pred HHHHHHHHh---c-CHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHH
Confidence 554443211 1 234567788888899998876543321 112244566666432110000 01247
Q ss_pred HHHHHHHcCcEEEeCCCC-----CCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 385 LWDSMLHEVKLNISPGSS-----CHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 385 l~~~l~~~~gi~v~pg~~-----f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
+++.++++ |+.+.+... +....+..+|+++. ..++|+++++++.|++++++..
T Consensus 326 ~~~~~~~~-Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~~ 384 (392)
T PLN03227 326 IAHHSLSE-GVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAIL 384 (392)
T ss_pred HHHHHHHC-CCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78888776 999875221 11223567999986 4499999999999999987653
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-23 Score=204.13 Aligned_cols=287 Identities=14% Similarity=0.174 Sum_probs=191.5
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----Hhhhc
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD----LRWRT 165 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~~ 165 (442)
+|+. .+..+|++++|++.+ .+++++++|+++++..++.+++++||+|+++.|.|+.+... ++ ..
T Consensus 60 r~~~-p~~~~Le~~iA~~~g----------~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~-~~ 127 (400)
T PRK06234 60 RLGN-PTSTEVENKLALLEG----------GEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLT-RY 127 (400)
T ss_pred CCCC-ccHHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHh-hC
Confidence 3444 478999999999975 24678899999999999999999999999999999875543 35 38
Q ss_pred CcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhc--CcEEEEeccCC
Q 046900 166 GIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK--NIHLVSDEIYS 243 (442)
Q Consensus 166 G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~--~~~vi~De~y~ 243 (442)
|++++.++.. |++++++.+++ ++++|++++|+||||.+.+ +++|+++|+++ ++++|+|++|+
T Consensus 128 G~~v~~vd~~-------d~e~l~~~i~~------~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~ 191 (400)
T PRK06234 128 GVEVTFVDTS-------NLEEVRNALKA------NTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFC 191 (400)
T ss_pred CeEEEEECCC-------CHHHHHHHhcc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCC
Confidence 9999888742 68999998875 7899999999999999998 77777888886 99999999998
Q ss_pred cCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee-EEEeecCHHHHHHHHHc--ccc--CCCcHHHHHHH
Q 046900 244 GSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV-GTIYSYNDKVVTTARRM--SSF--TLISSQTQYLL 318 (442)
Q Consensus 244 ~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri-G~i~~~~~~~~~~~~~~--~~~--~~~s~~~q~~~ 318 (442)
...+.. ++ .. +..+++.|+||.++.+|+|+ ||++++ +.+.+.++.. ... ..+++.....+
T Consensus 192 ~~~~~~----~l-~~---------g~Divv~S~sK~l~g~g~~~gG~v~~~-~~~~~~l~~~~~~~~~g~~l~p~~a~l~ 256 (400)
T PRK06234 192 TPYIQR----PL-QL---------GADVVVHSATKYLNGHGDVIAGFVVGK-EEFINQVKLFGIKDMTGSVIGPFEAFLI 256 (400)
T ss_pred chhcCC----ch-hh---------CCcEEEeeccccccCCCCceeEEEEec-HHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 654321 11 11 33488999999998889875 999985 4555555432 111 33455555555
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-ee-c----------------CCceEEEEEecCCcccccCh
Q 046900 319 ASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIE-CL-K----------------GNAGLFCWMNLSPLLEEQTR 379 (442)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~-~----------------~~~g~~~~~~~~~~~~~~~~ 379 (442)
...++.. ..+.++..++...+.+.|+++ .+. +. + ..|+ .+.+++... .
T Consensus 257 ~~~l~tl-------~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~-l~s~~l~~~-----~ 323 (400)
T PRK06234 257 IRGMKTL-------QIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGA-MISFELKGG-----V 323 (400)
T ss_pred HhccCcH-------HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCc-eEEEEecCc-----H
Confidence 5444432 223344456667777777764 121 11 1 1244 445566532 1
Q ss_pred hhHHHHHHHHHHcCcEEEeCCCCCCC---------------------CCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 380 EGELALWDSMLHEVKLNISPGSSCHC---------------------SEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 380 ~~~~~l~~~l~~~~gi~v~pg~~f~~---------------------~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
+...++.+.| +-.++.+.-|..... -.++.+|||++- |+.+.+++.|.+++..
T Consensus 324 ~~~~~f~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~~ 397 (400)
T PRK06234 324 EEGKVVMNNV-KLATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGL---EDVDDIIADLKQALDL 397 (400)
T ss_pred HHHHHHHHhC-CcceEeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHHHHHH
Confidence 2344555555 322444433332210 124689999996 3456667777776654
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-23 Score=197.98 Aligned_cols=302 Identities=19% Similarity=0.182 Sum_probs=217.1
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEE
Q 046900 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIV 170 (442)
Q Consensus 91 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~ 170 (442)
++...-+.+|.+.+|+|++ .+..++.+++..++..++.+|++++|.|+.+.-.|......++. .+++++
T Consensus 80 ~G~~~~h~~LE~~lA~f~g----------~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~rl-s~a~~~ 148 (388)
T COG0156 80 SGTSDLHVELEEELADFLG----------AEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRL-SRAEVR 148 (388)
T ss_pred cCCcHHHHHHHHHHHHHhC----------CCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHHh-CCCcEE
Confidence 4444456789999999986 55677777778888999999999999999999999999999995 899999
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
.+.. .|++.||+.+++++..+.+.++|+...--...|.+.| +.+|++++++|+.++++||+|+-.+++..
T Consensus 149 ~f~H-------nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~ 218 (388)
T COG0156 149 RFKH-------NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP---LPELVELAEKYGALLYVDEAHAVGVLGPN 218 (388)
T ss_pred EecC-------CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCC---HHHHHHHHHHhCcEEEEEccccccccCCC
Confidence 8875 4789999999886533323455565667789999998 88888999999999999999998887643
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc-ccc---CCCcHHHHHHHHHHhcCch
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM-SSF---TLISSQTQYLLASMLSNKK 326 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~-~~~---~~~s~~~q~~~~~~l~~~~ 326 (442)
. ..+.+.. +....+..|+++||||+||..| ||+.+ +..+.+.+.+. ..+ ...+|....++...++
T Consensus 219 G-rG~~e~~---g~~~~~vdi~~gTlsKAlGs~G---g~v~g-~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~--- 287 (388)
T COG0156 219 G-RGLAEHF---GLEPEEVDIIVGTLGKALGSSG---GYIAG-SAALIDYLRNRARPFIFSTALPPAVAAAALAALR--- 287 (388)
T ss_pred C-ccHHHHh---CCCCccceEEEEEchhhhcccC---ceeeC-cHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHH---
Confidence 2 2222222 1112356789999999999888 99998 67777777654 333 2233433333444443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC-
Q 046900 327 FTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC- 405 (442)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~- 405 (442)
.++ .....+++++++...+.+.+...|+.+.+..+. .+.+.+.+. ..+.++...|+++ ||.+.+......
T Consensus 288 ~l~-~~~~~r~~L~~~~~~~~~~~~~~~~~~~~s~s~-I~pv~~gd~------~~a~~~s~~l~~~-Gi~v~~i~~PTVp 358 (388)
T COG0156 288 ILE-EGPERRERLQELAAFFRSLLKALGLVLLPSESP-IIPVILGDE------ERALEASRALLEE-GIYVSAIRPPTVP 358 (388)
T ss_pred HHH-hCHHHHHHHHHHHHHHHHHHHhcCCccCCCCCC-eeeeEeCCH------HHHHHHHHHHHHC-CeeEeeecCCCCC
Confidence 212 234567778888888887777667776555555 554444432 1377888899888 999987543222
Q ss_pred CCCCEEEEEee-cCCHHHHHHHHHHHHHH
Q 046900 406 SEPGWFRVCFA-NMSEQTLEVALKRIHNF 433 (442)
Q Consensus 406 ~~~~~iRls~~-~~~~e~i~~~l~~l~~~ 433 (442)
.+...+|++++ ..++++++++++.|.++
T Consensus 359 ~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 359 KGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred CCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 22357999986 34899999999988765
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-23 Score=201.50 Aligned_cols=218 Identities=22% Similarity=0.232 Sum_probs=158.0
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---h
Q 046900 88 NALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---R 164 (442)
Q Consensus 88 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~ 164 (442)
..+|+.+ -...|++++|++.+ .+++++|+|+++++.+++.+++++||+|+++.|+|......+.. .
T Consensus 45 Y~R~~~p-~~~~le~~lA~l~g----------~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~ 113 (382)
T TIGR02080 45 YSRSGNP-TRDLLQQALAELEG----------GAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKK 113 (382)
T ss_pred ccCCCCc-hHHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 3456554 35788888998864 46799999999999999999999999999999999865443321 2
Q ss_pred cCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc
Q 046900 165 TGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG 244 (442)
Q Consensus 165 ~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~ 244 (442)
.|+++..++. .|++.+++++++ ++|+|++++|+||||.+++ +++|+++|++++++||+|++|..
T Consensus 114 ~~~~v~~~d~-------~d~~~l~~ai~~------~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~ 177 (382)
T TIGR02080 114 GCFRVLFVDQ-------GDEQALRAALAQ------KPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLS 177 (382)
T ss_pred cCeEEEEECC-------CCHHHHHHhcCc------CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcc
Confidence 3556555431 378899998865 7899999999999999998 66788888899999999999986
Q ss_pred CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHH
Q 046900 245 SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASM 321 (442)
Q Consensus 245 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~ 321 (442)
+... .++ .+ +..++++|+||.++ .+|++.|++++.++.+.+.+...... ..++++.+..+..-
T Consensus 178 ~~~~----~pl-~~---------gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~ 243 (382)
T TIGR02080 178 PALQ----NPL-AL---------GADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRG 243 (382)
T ss_pred cccC----Cch-hh---------CCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcc
Confidence 4321 121 12 12378899999885 57889999988667776666544333 34566666555443
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
++. +....++..++...+.+.|+++
T Consensus 244 l~t-------l~~R~~~~~~na~~~a~~L~~~ 268 (382)
T TIGR02080 244 LRT-------LVARMRLQQRNAQAIVEYLQTQ 268 (382)
T ss_pred cch-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 332 2333455567777888888765
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=206.89 Aligned_cols=269 Identities=17% Similarity=0.184 Sum_probs=184.1
Q ss_pred CCcEEEecChHHHHHHHHHhhcC---------CC-CeEEEcCCCCcChH-HhHhhhcCcE------------EEEEecCC
Q 046900 120 LNRIVVTAGATAANELLTFILAD---------PG-DALLVPTPYYPGFD-RDLRWRTGIK------------IVPIHCDS 176 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~---------~g-d~Vl~~~p~y~~~~-~~~~~~~G~~------------v~~v~~~~ 176 (442)
.+.+++++++++|+..+++.... +| +.|+...-+|.+.. ..+.. .+.. +..++.
T Consensus 97 ~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-- 173 (396)
T PRK04073 97 KDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSL-SSEEEYKRGFGPMLPGIKKIPY-- 173 (396)
T ss_pred CCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhh-cCCcccccCCCCCCCCceEeCC--
Confidence 46899999999999998887631 33 67777777776543 33321 2211 112221
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHH-HHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccH
Q 046900 177 SNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRS-VLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSI 255 (442)
Q Consensus 177 ~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~-~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~ 255 (442)
.|++.+++.+.+ +++++++++|+||||.+++.+ .+++|.++|++||+++|+||+|..+...+..+.
T Consensus 174 -----~d~~~l~~~i~~------~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~-- 240 (396)
T PRK04073 174 -----GDLEALKAAITP------NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFA-- 240 (396)
T ss_pred -----CCHHHHHHhccc------CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHH--
Confidence 167888887754 677888888899999998765 599999999999999999999998655442111
Q ss_pred HHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhcCchhHHHHHH
Q 046900 256 AEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLSNKKFTENYIK 333 (442)
Q Consensus 256 ~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~ 333 (442)
.+.. +...-+.+|||.+|.+|+|+||+++ ++.+.+.+.. ....+..+++.|.++.+.|+... + .
T Consensus 241 ~~~~--------~~~pdi~~~sK~lg~gg~~ig~~~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~--~---~ 306 (396)
T PRK04073 241 CDWD--------NVTPDMYILGKALGGGVFPISCVAA-NRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLE--E---E 306 (396)
T ss_pred hhhc--------CCCCCEEEecccccCCCCcceEEEE-cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--h---c
Confidence 1111 1111234689999988899999999 5666666543 22335578889988888876211 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHhCC---CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCE
Q 046900 334 TNRERLQKRYQMIIEGLRSAG---IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGW 410 (442)
Q Consensus 334 ~~~~~~~~~~~~l~~~L~~~g---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~ 410 (442)
...+..+++++++.+.|++.+ +....+. |+|++++++. .+.+++++|+++ ||.+.+. .+++
T Consensus 307 ~l~~~~~~~~~~l~~~L~~l~~~~i~~~~~~-g~~~~~~~~~--------~~~~~~~~l~~~-Gv~~~~~------~~~~ 370 (396)
T PRK04073 307 KLPERSLELGEYFKEQLKEIDNPMIKEVRGR-GLFIGVELNE--------PARPYCEALKEE-GLLCKET------HETV 370 (396)
T ss_pred CHHHHHHHHHHHHHHHHHhhcCCcccceecc-eEEEEEEecc--------hHHHHHHHHHHC-CeEEecC------CCCE
Confidence 233455666788888887753 3333344 5678888764 256788888776 9999863 2468
Q ss_pred EEEEee-cCCHHHHHHHHHHHHHHH
Q 046900 411 FRVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 411 iRls~~-~~~~e~i~~~l~~l~~~l 434 (442)
+|+++. ..+++++++++++|++++
T Consensus 371 iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 371 IRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred EEEECCcccCHHHHHHHHHHHHHHh
Confidence 999964 338999999999999875
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=208.44 Aligned_cols=291 Identities=19% Similarity=0.232 Sum_probs=200.6
Q ss_pred HHHHHHHHHHH---HHHhCCCCccCCCcEEEecChHHHHHHHHHhhc-CCCCeEEEcCCCCcChHHhHhh---hcCcEEE
Q 046900 98 KSFRQAMASFM---EQIRGGRAKFDLNRIVVTAGATAANELLTFILA-DPGDALLVPTPYYPGFDRDLRW---RTGIKIV 170 (442)
Q Consensus 98 ~~lr~~ia~~l---~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~---~~G~~v~ 170 (442)
..++++++++. .+.+| ++++++.+|+|+++++..++.++. .+||.|+++.+.|+.+...+.. ..|++++
T Consensus 108 ~g~~~~~~e~~~~la~l~g----~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~ 183 (447)
T PRK00451 108 QGTLQAIFEYQTMICELTG----MDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVV 183 (447)
T ss_pred hHHHHHHHHHHHHHHHHhC----CCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEE
Confidence 44666666444 66655 567789999999999999988874 7899999999999988876552 2699999
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEE--eccCCcCCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVS--DEIYSGSAFS 248 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~--De~y~~~~~~ 248 (442)
.+++++ + .+|++++++.+.+ ++++|++++| ||||.+.+ +++|.++|+++|+++++ |.+...+.
T Consensus 184 ~v~~~~--~-~~d~~~l~~~i~~------~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~~-- 248 (447)
T PRK00451 184 EVPYED--G-VTDLEALEAAVDD------DTAAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLGLL-- 248 (447)
T ss_pred EecCCC--C-CCCHHHHHHhcCC------CeEEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhccC--
Confidence 999875 3 6899999998864 7899999999 89999976 88888999999999988 43321110
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEe---cCcccCCCCCceeEEEeecCHHHHHHH------------------------
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVY---SLSKDLGLPGFRVGTIYSYNDKVVTTA------------------------ 301 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~---S~SK~~g~~G~RiG~i~~~~~~~~~~~------------------------ 301 (442)
..... .+..+++. +|||.+++.|+|+||++++ +.+.+.+
T Consensus 249 ----~~~~~---------~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 314 (447)
T PRK00451 249 ----KPPGE---------YGADIVVGEGQPLGIPLSFGGPYLGFFATR-KKLVRQMPGRLVGETVDADGKRGFVLTLQAR 314 (447)
T ss_pred ----CCccc---------CCCCEEEECCCcCCCCCCCCCCCchHHHhh-HHHHhhCCCCEeeeecccCCCeeeEeecccc
Confidence 01111 12234444 7888888889999999884 4444432
Q ss_pred ----HHccccCCCc--HHHH-HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEEE--EecC
Q 046900 302 ----RRMSSFTLIS--SQTQ-YLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCW--MNLS 371 (442)
Q Consensus 302 ----~~~~~~~~~s--~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~--~~~~ 371 (442)
+........+ ...| .+++..+... .+..+++.++++.++++++.+.|++. |+++. ++.+|.+ ++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~~v~~~ 390 (447)
T PRK00451 315 EQHIRREKATSNICTNQALNALAAAIYMSLL--GPEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPFFNEFVVRLP 390 (447)
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCeEEEEEEecC
Confidence 1111111111 1223 2222222211 13357788899999999999999987 67765 3445544 4443
Q ss_pred CcccccChhhHHHHHHHHHHcCcEE-EeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHH
Q 046900 372 PLLEEQTREGELALWDSMLHEVKLN-ISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 372 ~~~~~~~~~~~~~l~~~l~~~~gi~-v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l 434 (442)
. +..+++++|+++ ||. ..++..|+....+++|+++. .-++++++++++.|++++
T Consensus 391 ~--------~~~~~~~~L~~~-gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 391 K--------PAEEVNEALLEK-GILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred C--------CHHHHHHHHHhc-CCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 1 256889999887 665 34566665434578999986 228999999999998764
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-23 Score=198.95 Aligned_cols=285 Identities=15% Similarity=0.187 Sum_probs=194.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCC---------------eEEEcCCCCcCh---
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGD---------------ALLVPTPYYPGF--- 157 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd---------------~Vl~~~p~y~~~--- 157 (442)
+.+++++++++++.+.+| .+++++|+|+++++.+++.+++++|| .|+++.|.|..|
T Consensus 42 ~~~~~~~~~~~~~a~~~g------~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~ 115 (363)
T TIGR01437 42 EIKELVNKTGEYIANLLG------VEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAP 115 (363)
T ss_pred CHHHHHHHHHHHHHHhhC------CCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCc
Confidence 467888999988888765 45799999999999999999999998 999999888766
Q ss_pred -HHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE-EeCCCCCCCcCCCHHHHHHHHHHHHhcCcE
Q 046900 158 -DRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL-ITNPSNPLGATIQRSVLEELLDFATRKNIH 235 (442)
Q Consensus 158 -~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~-l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~ 235 (442)
...+. ..|++++.++.+ +.+|++.+++++++ ++++++ +++|+||+|.+.+ +++|+++|++||++
T Consensus 116 ~~~~~~-~~g~~~v~v~~~----~~~d~~~le~ai~~------~t~ai~~v~~~~~~~g~~~~---~~~i~~~a~~~gi~ 181 (363)
T TIGR01437 116 VETMVR-LGGGKVVEAGYA----NECSAEQLEAAITE------KTAAILYIKSHHCVQKSMLS---VEDAAQVAQEHNLP 181 (363)
T ss_pred hHHHHH-hcCCeEEEEcCC----CCCCHHHHHHhcCh------hceEEEEEecCCCCcCCcCC---HHHHHHHHHHcCCe
Confidence 35556 389999988763 35899999999976 778765 5788999999999 56789999999999
Q ss_pred EEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc-------C
Q 046900 236 LVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF-------T 308 (442)
Q Consensus 236 vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~-------~ 308 (442)
+|+|++|+. + ..+...+ +..+++.|+||.+ +|++.|+++. ++.+.+.++..... +
T Consensus 182 vivD~a~~~---~---~~~~~~~---------g~D~~~~S~~K~l--~gp~~G~l~~-~~~~i~~~~~~~~~~~~~~~~~ 243 (363)
T TIGR01437 182 LIVDAAAEE---D---LQKYYRL---------GADLVIYSGAKAI--EGPTSGLVLG-KKKYIEWVKLQSKGIGRAMKVG 243 (363)
T ss_pred EEEECCCCC---c---hHHHHHc---------CCCEEEEeCCccc--CCCceEEEEE-cHHHHHHHHhccCCCcceeccC
Confidence 999999972 1 1111222 2236778999976 6888999998 44444444322111 1
Q ss_pred CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC--CceE-----EEEEecCCcccccChh
Q 046900 309 LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKG--NAGL-----FCWMNLSPLLEEQTRE 380 (442)
Q Consensus 309 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~--~~g~-----~~~~~~~~~~~~~~~~ 380 (442)
..+..++.++...+.. +..+..+.+.++++.+.+.|.+. |+++..+ ..+. -+.++.... + .
T Consensus 244 ~~~~~gl~aAl~~~~~------~~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~----g-~ 312 (363)
T TIGR01437 244 KENILGLTAALEQYLS------TGKESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESEL----G-M 312 (363)
T ss_pred HHHHHHHHHHHHHHHc------cCcccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccCC----C-C
Confidence 1111222233322222 11223334445677888999886 7877632 2111 111222110 0 1
Q ss_pred hHHHHHHHHHHcCc--EEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 381 GELALWDSMLHEVK--LNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 381 ~~~~l~~~l~~~~g--i~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
+..++.+.|.++ | |.+++ .| ...+.+|+++...+++|++.++++|++++
T Consensus 313 ~~~~l~~~L~~~-~~~I~~r~--~~--~~~~~~~l~~~~~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 313 TAADVVQALRQG-EPAIYTRG--YK--ANEGIIEIDPRSVTGGQLDIIVERIREIV 363 (363)
T ss_pred CHHHHHHHHhcC-CCCEEEee--ee--ecCCeEEEEeecCCHHHHHHHHHHHHHhC
Confidence 367888888554 6 77765 23 24578999998778999999999998763
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-23 Score=198.70 Aligned_cols=218 Identities=23% Similarity=0.249 Sum_probs=161.8
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---h
Q 046900 88 NALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---R 164 (442)
Q Consensus 88 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~ 164 (442)
..+|+++ ....|++++|++.+ .+++++++|+++++..++.+++++||+|+++.|+|+.....+.. .
T Consensus 46 Y~R~~~p-t~~~L~~~lA~l~g----------~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~ 114 (386)
T PRK08045 46 YSRRGNP-TRDVVQRALAELEG----------GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR 114 (386)
T ss_pred eeCCCCc-cHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 4556655 45889999999864 34699999999999999999999999999999999864433221 2
Q ss_pred cCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc
Q 046900 165 TGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG 244 (442)
Q Consensus 165 ~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~ 244 (442)
.|.++..++ ..|++.+++.+++ ++++|++++|+||||.+++ +++|.++|+++++++|+|++|..
T Consensus 115 ~gi~v~~vd-------~~d~e~l~~~l~~------~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~ 178 (386)
T PRK08045 115 GCYRVLFVD-------QGDEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLS 178 (386)
T ss_pred CCeEEEEeC-------CCCHHHHHHhccc------CCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCc
Confidence 345665553 1578999988864 7899999999999999998 66777888899999999999986
Q ss_pred CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHH
Q 046900 245 SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASM 321 (442)
Q Consensus 245 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~ 321 (442)
... ..++ .+. .-++++|+||.++ .++++.|++++.++.+.+.+...... ...+++.++.+...
T Consensus 179 ~~~----~~pl-~~g---------aDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rg 244 (386)
T PRK08045 179 PAL----QNPL-ALG---------ADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRG 244 (386)
T ss_pred ccc----CCch-hhC---------CCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhh
Confidence 432 1122 221 1278999999985 56688999988666666555433222 34678888887777
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
++. +..+.++..+++..+.+.|+++
T Consensus 245 l~t-------l~~R~~~~~~na~~la~~L~~~ 269 (386)
T PRK08045 245 LRT-------LVPRMELAQRNAQAIVKYLQTQ 269 (386)
T ss_pred hcc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 765 3445566777888888888876
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=206.88 Aligned_cols=347 Identities=14% Similarity=0.140 Sum_probs=218.8
Q ss_pred CCCCCCceeeeeccc--cc--ccHHHHHHHHHhCCCCcccCCCCCCCCcccccC-CCcchHHHHHHHHHHHHHHhCCCCc
Q 046900 43 ESTNPSGVIQMGLAE--NQ--VSFDLLEEYLEQQPEASTWGKGAPGFRENALFQ-DYHGLKSFRQAMASFMEQIRGGRAK 117 (442)
Q Consensus 43 ~~~~~~~~i~l~~~~--n~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~ 117 (442)
-+.....+||+..+. .. ++++.+.+.+.+.... ...|. +..+..+|+++|++++.
T Consensus 43 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~------------~~~~~~~~~~~~~lae~l~~~~~-------- 102 (423)
T TIGR00713 43 YDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALER------------GTSYGAPTEAEILLAKEIISRVP-------- 102 (423)
T ss_pred EeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHh------------CCcCCCCCHHHHHHHHHHHHhCC--------
Confidence 344567788987654 22 2345555555544321 11232 34577899999998753
Q ss_pred cCCCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhh--cCcEEEEEecCCC-------CCCc---CC
Q 046900 118 FDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWR--TGIKIVPIHCDSS-------NNFQ---IT 183 (442)
Q Consensus 118 ~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~--~G~~v~~v~~~~~-------~~~~---~d 183 (442)
..++|++++|+++++..+++... ...++|+...++|.++...+... .|......+..+. ..+. .|
T Consensus 103 -~~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 181 (423)
T TIGR00713 103 -SVEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYND 181 (423)
T ss_pred -cccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCC
Confidence 13689999999999999887532 24589999999999875433210 1111111111000 0000 27
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEe-CCCCCCCcCCC-HHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhh
Q 046900 184 PQALEAAYKEAESKDMRVRGVLIT-NPSNPLGATIQ-RSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEA 261 (442)
Q Consensus 184 ~~~l~~~l~~~~~~~~~~~~v~l~-~P~NPtG~~~~-~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~ 261 (442)
++.+++.+.++ +.++++|++. +|+| +|.+.+ .+.+++|.++|++|++++|+||+|..+.++ ..+ ......-
T Consensus 182 ~~~l~~~i~~~---~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g-~~~--~~~~~~~ 254 (423)
T TIGR00713 182 LEALEEVFEEY---GEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVA-LGG--AQEYFGV 254 (423)
T ss_pred HHHHHHHHHHc---CCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccC-cch--hHHHhCC
Confidence 89999988742 2367777775 7788 798887 588999999999999999999999887442 221 1111110
Q ss_pred hcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH-----ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHH
Q 046900 262 RQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR-----MSSFTLISSQTQYLLASMLSNKKFTENYIKTNR 336 (442)
Q Consensus 262 ~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~-----~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 336 (442)
.++ +.+|||.++ +|+|+||+++ ++.+.+.+.. ....+..+++++.++.+.|+...- ..+.++.+
T Consensus 255 ----~pD----i~t~sK~l~-~G~pig~v~~-~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~-~~~~~~~~ 323 (423)
T TIGR00713 255 ----EPD----LTTLGKIIG-GGLPVGAFGG-RREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDE-EGVYTELD 323 (423)
T ss_pred ----Ccc----hhhhhhhhc-CCCceeeeeE-HHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 122 347999999 9999999999 5666666642 112345788888887777763211 11355666
Q ss_pred HHHHHHHHHHHHHHHhCCCeeec-CCceEE-EEEecCCccc-----ccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCC
Q 046900 337 ERLQKRYQMIIEGLRSAGIECLK-GNAGLF-CWMNLSPLLE-----EQTREGELALWDSMLHEVKLNISPGSSCHCSEPG 409 (442)
Q Consensus 337 ~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~-~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~ 409 (442)
+..++.++.+.+.++++++.... ..|+++ +++..+...+ ..+......++..|+++ ||.+.++ .| +
T Consensus 324 ~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~-~~-----~ 396 (423)
T TIGR00713 324 ELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDK-GVFLPPS-QF-----E 396 (423)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHC-CeEEecC-Cc-----c
Confidence 67777778888888777765532 344433 3343221100 00111234677788775 9998753 22 3
Q ss_pred EEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 410 WFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 410 ~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
.+|+++.. +++++++++++|.+++.+
T Consensus 397 ~~~l~~~~-t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 397 ACFLSAAH-TEEDIENTIEAAEEVFAE 422 (423)
T ss_pred ceeeECCC-CHHHHHHHHHHHHHHHhh
Confidence 47898875 899999999999998865
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-23 Score=200.59 Aligned_cols=290 Identities=16% Similarity=0.199 Sum_probs=192.9
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---h
Q 046900 88 NALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---R 164 (442)
Q Consensus 88 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~ 164 (442)
..+|+++. ..+|++.+|++++ .++.+++++++.++..++.+++++||+|+++.|.|+.....+.. .
T Consensus 55 y~r~~~pt-~~~Le~~lA~l~G----------~~~al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~ 123 (386)
T PRK06767 55 YSRLGNPT-VKLFEERMAVLEG----------GEEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEK 123 (386)
T ss_pred ccCCCCcc-hHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhh
Confidence 34565553 5899999999975 23345555556799999989999999999999998876554332 2
Q ss_pred cCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc
Q 046900 165 TGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG 244 (442)
Q Consensus 165 ~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~ 244 (442)
.|+++..++. .|++.+++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.
T Consensus 124 ~gi~~~~~~~-------~d~~~l~~~i~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~ 187 (386)
T PRK06767 124 FMITHSFCDM-------ETEADIENKIRP------NTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCS 187 (386)
T ss_pred cCeEEEEeCC-------CCHHHHHHhhCc------CceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCcc
Confidence 4666555432 368889888764 7899999999999999998 67778888899999999999975
Q ss_pred CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee-EEEeecCHHHHHHHHHccc-c-CCCcHHHHHHHHHH
Q 046900 245 SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV-GTIYSYNDKVVTTARRMSS-F-TLISSQTQYLLASM 321 (442)
Q Consensus 245 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri-G~i~~~~~~~~~~~~~~~~-~-~~~s~~~q~~~~~~ 321 (442)
..+. . ++ .. +..+++.|+||.++.+|.|+ ||++++++.+.+..+.... . ..++++.++++...
T Consensus 188 ~~~~-~---pl-~~---------g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~ 253 (386)
T PRK06767 188 PYLQ-R---PL-EL---------GCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRG 253 (386)
T ss_pred cccC-C---ch-hc---------CCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcC
Confidence 3321 1 11 11 22377889999998789885 8999865555444433222 2 23455555554444
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCee-ec-----------CCceEEEEEecCCcccccChhhHHHHHHH
Q 046900 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIEC-LK-----------GNAGLFCWMNLSPLLEEQTREGELALWDS 388 (442)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (442)
++. +....++..++...+.+.|+++ +++. .- ..+| .+.+++... .++..++.+.
T Consensus 254 L~t-------l~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg-~vsf~l~~~-----~~~~~~f~~~ 320 (386)
T PRK06767 254 LKT-------LAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGG-VISFSIKGG-----KEETQAFIND 320 (386)
T ss_pred CCc-------HHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCc-eEEEEEcCC-----HHHHHHHHHh
Confidence 432 2344566678888899999886 5653 21 2344 444556432 1245677777
Q ss_pred HHHcCcEEEeCCCCCCC---------------------CCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 389 MLHEVKLNISPGSSCHC---------------------SEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 389 l~~~~gi~v~pg~~f~~---------------------~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
| +..++.+.-|..... -.++.+|||++- |+.+.+++-|.+++.
T Consensus 321 l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~ 384 (386)
T PRK06767 321 L-HFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL---ESWEDIVSDLEQALK 384 (386)
T ss_pred C-CccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 7 334666665543211 123689999996 446777777777765
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-23 Score=204.60 Aligned_cols=294 Identities=18% Similarity=0.235 Sum_probs=197.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc----CCCCeEEEcCCCCcChHHhHhh--hcCcEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA----DPGDALLVPTPYYPGFDRDLRW--RTGIKI 169 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~~~--~~G~~v 169 (442)
...++|+.+|++++ +++++|++++|+++++.+++.++. .+||.|+++.++|+.+...+.. ..|+++
T Consensus 50 ~~~~~r~~ia~~~g--------~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~ 121 (404)
T PRK14012 50 AVDIARNQIADLIG--------ADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEV 121 (404)
T ss_pred HHHHHHHHHHHHcC--------cCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEE
Confidence 35677888888765 567899999999999999887763 7899999999999887554432 259999
Q ss_pred EEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC
Q 046900 170 VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS 249 (442)
Q Consensus 170 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~ 249 (442)
+.++.++ ++.+|++.|++.+++ +++++++++++||||.+++ +++|.++|+++++++|+|++++. +
T Consensus 122 ~~v~~~~--~g~~d~~~l~~~i~~------~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~vivD~a~~~----g 186 (404)
T PRK14012 122 TYLDPQS--NGIIDLEKLEAAMRD------DTILVSIMHVNNEIGVIQD---IAAIGEICRERGIIFHVDAAQSV----G 186 (404)
T ss_pred EEEccCC--CCcCCHHHHHHhcCC------CCEEEEEECcCCCccchhh---HHHHHHHHHHcCCEEEEEcchhc----C
Confidence 9998875 356899999999865 7889999999999999988 67888889999999999999973 2
Q ss_pred CCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc--------ccCCCcHHHHHHHHHH
Q 046900 250 SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS--------SFTLISSQTQYLLASM 321 (442)
Q Consensus 250 ~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~--------~~~~~s~~~q~~~~~~ 321 (442)
.....+... +--+++.|++|.+| |+ ++|+++++++.......... ..+..+......+.+.
T Consensus 187 ~~~~~~~~~---------~~D~~~~s~~K~~g-p~-g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~a 255 (404)
T PRK14012 187 KVPIDLSKL---------KVDLMSFSAHKIYG-PK-GIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEA 255 (404)
T ss_pred CcccCcccC---------CCCEEEEehhhccC-CC-ceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHH
Confidence 111122222 12256679999887 54 68998885543221111000 0111222222222233
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC-----CceEEEEEecCCcccccChhhHHHHHHHHHHcCcE
Q 046900 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKG-----NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKL 395 (442)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi 395 (442)
+. ..+.......++.++.++++.+.|++. ++.+..+ ...+++|+.+.+ ..++...| .++
T Consensus 256 l~---~~~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l---~~~ 320 (404)
T PRK14012 256 AR---IAKEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVE---------GESLIMAL---KDL 320 (404)
T ss_pred HH---HHHhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcC---------HHHHHHhC---CCe
Confidence 32 112234455667777788888888765 4544321 234456665532 23454444 277
Q ss_pred EEeCCCCCCCC-----------------CCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 396 NISPGSSCHCS-----------------EPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 396 ~v~pg~~f~~~-----------------~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
.|..|..|.+. ..+.+|+++. ..++++++++++.|+++++.++
T Consensus 321 ~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~ 381 (404)
T PRK14012 321 AVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLR 381 (404)
T ss_pred EEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78777665431 1367999997 3489999999999999988763
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-23 Score=200.64 Aligned_cols=212 Identities=18% Similarity=0.159 Sum_probs=148.0
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCc----ChHHhHhhhcCcEEE
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP----GFDRDLRWRTGIKIV 170 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~----~~~~~~~~~~G~~v~ 170 (442)
....+|++++|++++ . ...+++ +++++++..++.+++++||+|+++.|.|. .+...++ ..|+++.
T Consensus 45 p~~~~L~~~lA~l~g--------~-~~~v~~-~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~-~~G~~v~ 113 (376)
T PRK06460 45 PTVLELTKKIVELEN--------A-EMGVAF-SSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLK-NWGVNVD 113 (376)
T ss_pred ccHHHHHHHHHHHhC--------C-CcEEEe-CCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHH-hhCcEEE
Confidence 367899999999976 2 234555 44568999999999999999999987664 3445566 4899988
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
.++.+. .+.+++.++ .++++|++++|+||||.+++. ++|+++|+++|++||+|++|+... .
T Consensus 114 ~~~~~~-------~~~l~~~~~------~~tklV~l~sp~NPtG~v~d~---~~I~~la~~~g~~vivDea~~~~~-~-- 174 (376)
T PRK06460 114 ASNPGS-------DNIIEKAKS------KRYDVVFVENITNPLLRVVDI---TELSKVCKENGSILIVDATFSTPI-N-- 174 (376)
T ss_pred EECCCC-------HHHHHHhcC------CCceEEEEECCCCCCCcccCH---HHHHHHHHHcCCEEEEECCcCccc-c--
Confidence 887542 233443322 378999999999999999995 567888889999999999997532 1
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHH
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~ 329 (442)
..+ +. .+..++++|+||.++ ..+.|+||+++ ++.+.+.+++....++.+... ..+..++...+
T Consensus 175 -~~~---l~-------~~~divv~S~sK~l~G~~~~~~G~~~~-~~~l~~~l~~~~~~~g~~~~~-~~a~~~l~~~~--- 238 (376)
T PRK06460 175 -QKP---LE-------LGADIVVHSASKFLAGHNDVIAGLAAG-YGKLLNVIDQMRRTLGTSLDP-HAAYLTLRGIK--- 238 (376)
T ss_pred -CCh---hh-------cCCCEEEeecceeccCCCCceEEEEec-CHHHHHHHHHHHHhcCCCCCH-HHHHHHHhchh---
Confidence 111 11 134588999999985 22368999998 566766666544443332211 22333344333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
+++.+.+++.++++.+.+.|+++
T Consensus 239 -~l~~r~~~~~~n~~~l~~~L~~~ 261 (376)
T PRK06460 239 -TLKIRMDVINRNAEQIAEFLEGH 261 (376)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHcC
Confidence 45667778889999999999875
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-23 Score=199.51 Aligned_cols=208 Identities=18% Similarity=0.240 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH----hHhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR----DLRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~~G~~v~~v 172 (442)
..+|++.+|++++ .+++++++|+++++..++.+++++||+|+++.+.|.+... .+. ..|++++.+
T Consensus 63 ~~~le~~la~l~g----------~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~-~~G~~v~~v 131 (390)
T PRK08133 63 VTMFQERLAALEG----------AEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFA-RFGIETTFV 131 (390)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHH-HcCcEEEEE
Confidence 5788888888764 4568999999999999999999999999999999977543 344 389999988
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+++ |++.+++.+++ ++|+|++++|+||||.+.+ +++|+++|+++|++||+|++|+...+..
T Consensus 132 d~~-------d~~~l~~~i~~------~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~--- 192 (390)
T PRK08133 132 DLT-------DLDAWRAAVRP------NTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQQ--- 192 (390)
T ss_pred CCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccCC---
Confidence 753 67889888864 7899999999999999987 7888889999999999999997543211
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee-EEEeecCHHHHHHHHH-cccc-CCCcHHHHHHHHHHhcCchhHH
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV-GTIYSYNDKVVTTARR-MSSF-TLISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri-G~i~~~~~~~~~~~~~-~~~~-~~~s~~~q~~~~~~l~~~~~~~ 329 (442)
++ .. +..+++.|+||.++.+|.++ ||+++ ++.+.+.+.. .... ..+++..+..+ +...+
T Consensus 193 -pl-~~---------g~Divv~S~sK~~~g~g~~~GG~vv~-~~~~~~~~~~~~~~~g~~~~~~~a~~~---l~gl~--- 254 (390)
T PRK08133 193 -PL-KL---------GADVVIHSATKYLDGQGRVLGGAVVG-SKELMEEVFGFLRTAGPTLSPFNAWVF---LKGLE--- 254 (390)
T ss_pred -ch-hh---------CCcEEEeecceeecCCcceEeEEEEc-CHHHHHHHHHHHHHhCCCCCHHHHHHH---Hcccc---
Confidence 11 12 22377899999998889998 55656 4444333332 2222 22344443333 33222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
.+..+.++..+++..+.+.|++.
T Consensus 255 -tl~~R~~~~~~~a~~la~~L~~~ 277 (390)
T PRK08133 255 -TLSLRMEAHSANALALAEWLEAH 277 (390)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhC
Confidence 24444555667788888998876
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-23 Score=199.90 Aligned_cols=290 Identities=12% Similarity=0.130 Sum_probs=201.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCC-cEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChH-HhHhhhcCcEEE--
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLN-RIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFD-RDLRWRTGIKIV-- 170 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~-~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~-~~~~~~~G~~v~-- 170 (442)
..++++.+|+.+.. .++ .+++++++++++..+++... ..++.|++.+.+|.+.. ..+.. .|.+..
T Consensus 68 ~~~~~~~la~~l~~--------~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~-~~~~~~~~ 138 (375)
T PRK04260 68 LNSLQEEVAQKLIG--------DKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSA-TGQDKIKD 138 (375)
T ss_pred CCHHHHHHHHHHhc--------CcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhc-cCCcccCC
Confidence 46788899987752 233 46889999999998877652 34578888888887633 33321 222111
Q ss_pred -------EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCC-HHHHHHHHHHHHhcCcEEEEeccC
Q 046900 171 -------PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQ-RSVLEELLDFATRKNIHLVSDEIY 242 (442)
Q Consensus 171 -------~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~-~~~l~~l~~~~~~~~~~vi~De~y 242 (442)
.++.. . ..|++.+++.+.+ ++.++++.+++|++|.+.+ .+-++++.++|+++|+++|+||+|
T Consensus 139 ~~~~~~~~~~~~---~-~~dl~~l~~~l~~------~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~ 208 (375)
T PRK04260 139 GFGDGVPHFSYA---I-FNDLNSVKALVNK------NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQ 208 (375)
T ss_pred CCCCCCCCeEEe---C-CCCHHHHHHhcCC------CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 01100 0 1378888887743 6778888889999998754 566999999999999999999999
Q ss_pred CcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHH
Q 046900 243 SGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLAS 320 (442)
Q Consensus 243 ~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~ 320 (442)
..+...+.. .+...... .++ +.||||+++ +|+|+||++++ +.+.+.+.. ....+..+++.+.++.+
T Consensus 209 ~g~g~~g~~-~~~~~~~~-----~pd----i~t~sK~l~-~G~~ig~~~~~-~~~~~~~~~~~~~~t~~~~~~~~~aa~a 276 (375)
T PRK04260 209 TGMGRTGKL-YAFEHYGI-----EPD----IFTLAKGLA-NGVPVGAMLAK-SSLGGAFGYGSHGSTFGGNKLSMAAASA 276 (375)
T ss_pred hCCCcccch-hhhHhhCC-----CCC----EEEeccccc-CCcceEEEEEc-HHHHhhcCCCCCCCCCCcCHHHHHHHHH
Confidence 876544431 12111111 122 348999998 89999999995 555555543 22235568889999999
Q ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCC
Q 046900 321 MLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPG 400 (442)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg 400 (442)
+++.... ++++++.++..+..++.+.+.+.+.+.-...+..|+++|++++. +..++.+++.++ ||.+.|+
T Consensus 277 ~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~l~~~-Gi~v~~~ 346 (375)
T PRK04260 277 TLDIMLT-AGFLEQALENGNYLQEQLQKALQDKETVTTVRGLGYMIGIETTA--------DLSQLVEAARDK-GLIVLTA 346 (375)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEeccceEEEEEecC--------cHHHHHHHHHhC-CCEEecC
Confidence 8876443 35567777888888888888887664212223478899999843 256788888776 9999874
Q ss_pred CCCCCCCCCEEEEEe-ecCCHHHHHHHHHHHHHH
Q 046900 401 SSCHCSEPGWFRVCF-ANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 401 ~~f~~~~~~~iRls~-~~~~~e~i~~~l~~l~~~ 433 (442)
+...+|+++ ..++++++++++++|+++
T Consensus 347 ------~~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 347 ------GTNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred ------CCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 236799999 566899999999999875
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-22 Score=198.90 Aligned_cols=311 Identities=11% Similarity=0.096 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHh---hcCCCCeEEEcCCCCcChHHhHhhhcCcEE-------
Q 046900 100 FRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFI---LADPGDALLVPTPYYPGFDRDLRWRTGIKI------- 169 (442)
Q Consensus 100 lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~---l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v------- 169 (442)
...++|+++....+ .+. .+.++++++++++++.+++. +.++ ..|+...++|.+....+.. .+...
T Consensus 85 ~~~~la~~l~~~~~--~~~-~~~~~f~~sGsea~e~Alklar~~~~r-~~iv~~~~~yHG~~~~~~~-~~~~~~~~~~~~ 159 (425)
T PRK08088 85 PYLELCEKMNQKVP--GDF-AKKTLLVTTGSEAVENAVKIARAATKR-SGVIAFTGAYHGRTHYTLA-LTGKVNPYSAGM 159 (425)
T ss_pred HHHHHHHHHHHhCC--CCC-CCEEEEeCCcHHHHHHHHHHHHHHhCC-CeEEEECCccCCccHHHHH-hhCCCCccccCC
Confidence 34478888876543 111 14666666666766655544 3334 4566669999887655442 22211
Q ss_pred ---------EEEecCCCCCCcCC--HHHHHHHHHHHHhcCCceeEEEEeCC--CCCCCcCCCHHHHHHHHHHHHhcCcEE
Q 046900 170 ---------VPIHCDSSNNFQIT--PQALEAAYKEAESKDMRVRGVLITNP--SNPLGATIQRSVLEELLDFATRKNIHL 236 (442)
Q Consensus 170 ---------~~v~~~~~~~~~~d--~~~l~~~l~~~~~~~~~~~~v~l~~P--~NPtG~~~~~~~l~~l~~~~~~~~~~v 236 (442)
+++|.+. .+...+ ++.|++.+.+.. ...++.+++ ..| +|++....+.+.+++|+++|++|++++
T Consensus 160 ~~~~~~~~~~~~p~~~-~~~~~~~~~~~l~~~l~~~~-~~~~~aavi-~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~l 236 (425)
T PRK08088 160 GLMPGHVYRALYPCPL-HGVSEDDAIASIERIFKNDA-APEDIAAII-IEPVQGEGGFYAASPAFMQRLRALCDEHGIML 236 (425)
T ss_pred CCCCCCcEEcCCCccc-cCccHHHHHHHHHHHHHhcc-CCCceEEEE-ECcccCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence 1122211 111111 455777765211 123455544 445 578777889999999999999999999
Q ss_pred EEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc--cccCCCcHHH
Q 046900 237 VSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM--SSFTLISSQT 314 (442)
Q Consensus 237 i~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~--~~~~~~s~~~ 314 (442)
|+||+|.++.+.+. ...+.. .+.+..+.||||.++ +|+|+||+++ ++.+.+.+... ...+..+++.
T Consensus 237 I~Dev~~g~g~~g~----~~~~~~------~~~~pdi~s~sK~l~-~G~rig~v~~-~~~~~~~~~~~~~~~t~~~~~~~ 304 (425)
T PRK08088 237 IADEVQTGAGRTGT----LFAMEQ------MGVAADLTTFAKSIA-GGFPLAGVTG-RAEVMDAIAPGGLGGTYAGNPIA 304 (425)
T ss_pred EEeccccCCCcCcc----hhHHhh------cCCCCCEEEEecccc-CCCcceeeEe-cHHHHhhcCCCCCCCCCCcCHHH
Confidence 99999998655442 212211 133344789999998 9999999999 55666655432 2235568899
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC-eeecCCceEEEEEecCCcccc--cChhhHHHHHHHHHH
Q 046900 315 QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGI-ECLKGNAGLFCWMNLSPLLEE--QTREGELALWDSMLH 391 (442)
Q Consensus 315 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~l~~ 391 (442)
|.++.++|+.... ++++++.++..++.++.+.+.+.+.+. ...... |+++|+.+...... .......+++..+++
T Consensus 305 ~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~-G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~ 382 (425)
T PRK08088 305 CAAALAVLKVFEQ-ENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDHSKPNAKLTAQIVARARD 382 (425)
T ss_pred HHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecc-ceEEEEEEecCCCCCCCCHHHHHHHHHHHHh
Confidence 9999999986543 455666666655555555554444432 122222 78999998432110 111236778888877
Q ss_pred cCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 392 EVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 392 ~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+ ||.+.|+..| ...+||+++ .++++++++++++|.+++++.
T Consensus 383 ~-Gv~~~~~~~~----~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 383 K-GLILLSCGPY----YNVLRILVPLTIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred C-CCEEecCCCC----CCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence 6 9998886544 367999998 558999999999999998753
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=199.71 Aligned_cols=347 Identities=14% Similarity=0.122 Sum_probs=219.3
Q ss_pred CCCCCCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|..+.....+||+..+ .+.++ .+.+.+.+.+....... ....|. .+....+++.+.+..
T Consensus 31 ~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~--------~~~~~~-----~~~~~~la~~l~~~~--- 94 (406)
T PRK12381 31 SRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWH--------TGNGYT-----NEPVLRLAKKLIDAT--- 94 (406)
T ss_pred CEEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhccc--------ccCccC-----CHHHHHHHHHHHhhC---
Confidence 34445556778998663 33443 35555554443321000 001121 223334444444321
Q ss_pred CccCCCcEEEecChHHHHHHHHHhhc--------CCCCeEEEcCCCCcChHHhHhhhcCcEEEE---EecCC--CCCCcC
Q 046900 116 AKFDLNRIVVTAGATAANELLTFILA--------DPGDALLVPTPYYPGFDRDLRWRTGIKIVP---IHCDS--SNNFQI 182 (442)
Q Consensus 116 ~~~~~~~i~~t~G~~~ai~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~---v~~~~--~~~~~~ 182 (442)
..+.+++++++++++..+++... .+...|+..+.+|.+....+....|..... .++.+ ..-...
T Consensus 95 ---~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (406)
T PRK12381 95 ---FADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYN 171 (406)
T ss_pred ---CCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCC
Confidence 24689999999999999988752 234679999999988764332112311000 01100 000113
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC--CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHh
Q 046900 183 TPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI--QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILE 260 (442)
Q Consensus 183 d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~--~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~ 260 (442)
|++.+++.+.+ ++++|++ +|.||+|-++ +.+.+++|.++|++||+++|+||+|..+.+.+..+ ......-
T Consensus 172 d~~~l~~~l~~------~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~-~~~~~~v 243 (406)
T PRK12381 172 DLNSASALIDD------QTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHYGV 243 (406)
T ss_pred CHHHHHHhccC------CeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchh-hhHhhCC
Confidence 78888888753 6666555 7999998765 68899999999999999999999998776655421 1111111
Q ss_pred hhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc--cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 046900 261 ARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM--SSFTLISSQTQYLLASMLSNKKFTENYIKTNRER 338 (442)
Q Consensus 261 ~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 338 (442)
.++ +.||||++| +|+|+||+++ ++.+.+.+... ...+..+++.+.++.+.++.. . -...++.
T Consensus 244 -----~pD----i~t~sK~l~-gG~~ig~~~~-~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l---~--~~~~~~~ 307 (406)
T PRK12381 244 -----TPD----VLTTAKALG-GGFPIGAMLT-TEKCASVMTVGTHGTTYGGNPLASAVAGKVLELI---N--TPEMLNG 307 (406)
T ss_pred -----CCC----EEEehhhhh-CCCceEEEEE-cHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH---h--hccHHHH
Confidence 112 359999998 9999999999 56666665432 222456888888888876431 1 1245677
Q ss_pred HHHHHHHHHHHHHhCC--Ce--eecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEE
Q 046900 339 LQKRYQMIIEGLRSAG--IE--CLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVC 414 (442)
Q Consensus 339 ~~~~~~~l~~~L~~~g--~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls 414 (442)
++++.+++.+.|++.+ .. ......|+++|++++.... ..+..++..++++ ||.+.++ +++++|++
T Consensus 308 ~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~----~~~~~~~~~l~~~-Gv~v~~~------g~~~lRl~ 376 (406)
T PRK12381 308 VKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYA----GKAKQISQEAAKA-GVMVLIA------GPNVVRFA 376 (406)
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchh----hHHHHHHHHHHHC-CcEEeeC------CCCEEEEe
Confidence 7788888888887653 22 2223557888998765210 1245677777665 9999763 23589999
Q ss_pred eec-CCHHHHHHHHHHHHHHHHHHHhh
Q 046900 415 FAN-MSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 415 ~~~-~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
++. ++++++++++++|.+++.+..++
T Consensus 377 p~~~~t~~~i~~~~~~l~~~l~~~~~~ 403 (406)
T PRK12381 377 PALNISEEEITTGLDRFARACERFVSR 403 (406)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 873 59999999999999999887654
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-22 Score=197.64 Aligned_cols=292 Identities=14% Similarity=0.145 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc----CCCC-eEEEcCCCCcCh-H--HhHhhhcCcE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA----DPGD-ALLVPTPYYPGF-D--RDLRWRTGIK 168 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~----~~gd-~Vl~~~p~y~~~-~--~~~~~~~G~~ 168 (442)
..++++.+++++. . +.+++++++++...++..+. .+|+ .|++.+..|.+. . .... ..+.+
T Consensus 93 ~~~l~~~la~~~~--------~---~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~-~~~~~ 160 (402)
T PRK07505 93 LKDLEEALSELFG--------A---SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGIC-ADETE 160 (402)
T ss_pred HHHHHHHHHHHhC--------C---CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhh-hcCCe
Confidence 4566666666542 2 44444455667776665432 2232 355666555432 1 1222 14567
Q ss_pred EEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCC
Q 046900 169 IVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS 248 (442)
Q Consensus 169 v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~ 248 (442)
++.+|. .|++.+++.+.+ +++++++++|+||||.+++ +++|.++|+++++++|+||+|+...++
T Consensus 161 v~~~~~-------~d~~~l~~~~~~------~~~~~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g 224 (402)
T PRK07505 161 VETIDH-------NDLDALEDICKT------NKTVAYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYG 224 (402)
T ss_pred EEEeCC-------CCHHHHHHHHhc------CCCEEEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcC
Confidence 777764 378999988764 5678999999999999999 677788888999999999999754443
Q ss_pred CCC-cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccC----CCcHHHHHHHHHHhc
Q 046900 249 SSE-FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT----LISSQTQYLLASMLS 323 (442)
Q Consensus 249 ~~~-~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~----~~s~~~q~~~~~~l~ 323 (442)
... ......+.. ..++++++++|+||++|.+| ||++++++.+.+.+......+ ..++++..++.+.++
T Consensus 225 ~~g~~~~~~~~~~----~~~d~~i~~~s~sK~~~~~G---g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~ 297 (402)
T PRK07505 225 KNGEGYVRSELDY----RLNERTIIAASLGKAFGASG---GVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAE 297 (402)
T ss_pred CCCCchHHHHcCC----CCCCCeEEEEechhhhhccC---eEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHH
Confidence 211 111111111 02578899999999999776 888765677777776544332 234455555555554
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCC
Q 046900 324 NKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSC 403 (442)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f 403 (442)
-. .++++.+.++.++++.+.+...+... ....+.++.++.++.. ..+.++.+.|+++ ||.+.++..+
T Consensus 298 ~~--~~~~~~~~~~~l~~~~~~~~~~~~~~----~~g~~~~i~~~~~~~~------~~~~~~~~~l~~~-Gi~v~~~~~p 364 (402)
T PRK07505 298 IH--LSEELDQLQQKLQNNIALFDSLIPTE----QSGSFLPIRLIYIGDE------DTAIKAAKQLLDR-GFYTSPVFFP 364 (402)
T ss_pred HH--hccCcHHHHHHHHHHHHHHHHHHHhc----CCCCCCCEEEEEeCCH------HHHHHHHHHHHHC-CCeEeeecCC
Confidence 10 01223344455555555443333211 0112222233333221 1356788888876 9999997433
Q ss_pred CCC-CCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 404 HCS-EPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 404 ~~~-~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
... +..++||+++ ..+++++++++++|.+++.+
T Consensus 365 ~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 365 VVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred CCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 221 2368999997 34899999999999998764
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-22 Score=195.30 Aligned_cols=292 Identities=20% Similarity=0.267 Sum_probs=211.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCccC-CCcEEEecChHHHHHHHHHhh---cCCCCeEEEcCCCCcCh----HHhHhhhcCc
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFD-LNRIVVTAGATAANELLTFIL---ADPGDALLVPTPYYPGF----DRDLRWRTGI 167 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~-~~~i~~t~G~~~ai~~~~~~l---~~~gd~Vl~~~p~y~~~----~~~~~~~~G~ 167 (442)
-+++.|+++|+|++ .+ .++|++|.|+|++++++..++ ..+||.|++..-.|+.. ....+ ..|+
T Consensus 67 ~~e~aRe~va~~~~--------a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~-~~Ga 137 (405)
T COG0520 67 LYEAAREAVARFLN--------ADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAK-RTGA 137 (405)
T ss_pred HHHHHHHHHHHHhC--------CCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHH-hcCc
Confidence 46788889999886 56 489999999999999999999 68999999999888664 33444 3799
Q ss_pred EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCC
Q 046900 168 KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAF 247 (442)
Q Consensus 168 ~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~ 247 (442)
+++.+|++++ ..+|.+.+++.+.+ +||+|.++.-+|.||.+.+ +++|+++|+++|+++++|.+++-
T Consensus 138 ~v~~i~~~~~--g~~~~~~~~~~i~~------~Tklvais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~--- 203 (405)
T COG0520 138 KVRVIPLDDD--GLLDLDALEKLITP------KTKLVALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAAQAA--- 203 (405)
T ss_pred EEEEEecCCC--CCcCHHHHHHhcCC------CceEEEEECccccccccch---HHHHHHHHHHcCCEEEEECcccc---
Confidence 9999999853 46889999997765 8999999999999999999 88999999999999999999874
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcc-cCCCCCceeEEEeecCHHHHHHHHHccc--------------------
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSK-DLGLPGFRVGTIYSYNDKVVTTARRMSS-------------------- 306 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK-~~g~~G~RiG~i~~~~~~~~~~~~~~~~-------------------- 306 (442)
+.....+..++.+ +++.|.+| .+|..| +|.+++.+ .+.+.+.....
T Consensus 204 -~h~~idv~~l~~D---------f~afsgHKwl~gP~G--iGvLy~r~-~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p 270 (405)
T COG0520 204 -GHLPIDVQELGCD---------FLAFSGHKWLLGPTG--IGVLYVRK-ELLEELEPFLGGGGMIEYVSRDEGVTLAELP 270 (405)
T ss_pred -CccCCCchhcCCC---------EEEEcccccccCCCc--eEEEEEch-HHHhhcCCcccCCCceeeecccccccccCcc
Confidence 3234455555443 78899999 566336 79999954 44433311000
Q ss_pred --c--CCCcHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHHHHHHHHHHhC-CCeeecCC---ceEEEEEecCCccccc
Q 046900 307 --F--TLISSQTQYLLASMLSNKKFTENY-IKTNRERLQKRYQMIIEGLRSA-GIECLKGN---AGLFCWMNLSPLLEEQ 377 (442)
Q Consensus 307 --~--~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~---~g~~~~~~~~~~~~~~ 377 (442)
+ +..+......+.+.++ ++++. +..+.+..++..+++.+.|++. ++++..+. .+-.+.+.++..
T Consensus 271 ~rfe~gTpn~~~~i~l~aAl~---~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~---- 343 (405)
T COG0520 271 LRFEAGTPNIAGAIGLAAALD---YLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGI---- 343 (405)
T ss_pred hhhccCCchHHHHHhHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCC----
Confidence 0 1111112222223332 22222 4566777788888899999887 68887653 233555566553
Q ss_pred ChhhHHHHHHHHHHcCcEEEeCCCCCCCC------CCCEEEEEee--cCCHHHHHHHHHHHHHHHH
Q 046900 378 TREGELALWDSMLHEVKLNISPGSSCHCS------EPGWFRVCFA--NMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 378 ~~~~~~~l~~~l~~~~gi~v~pg~~f~~~------~~~~iRls~~--~~~~e~i~~~l~~l~~~l~ 435 (442)
...++...|.++ ||.++.|..+... .+..+|+|++ + ++||++++++.|+++.+
T Consensus 344 ---~~~dv~~~L~~~-gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YN-t~edid~l~~aL~~~~~ 404 (405)
T COG0520 344 ---HPHDVATLLDEK-GIAVRAGHHCAQPLHRLLGVDATIRASLHLYN-TEEDVDRLLEALKKALA 404 (405)
T ss_pred ---CHHHHHHHHHhC-CeEEEeccccccHHHHhcCCCCceEEEEeecC-CHHHHHHHHHHHHHHhh
Confidence 257788888666 8999999877531 1345999997 5 89999999999998764
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=199.97 Aligned_cols=293 Identities=17% Similarity=0.239 Sum_probs=200.6
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc----CCCCeEEEcCCCCcChHHhHhh--hcCcEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA----DPGDALLVPTPYYPGFDRDLRW--RTGIKI 169 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~~~--~~G~~v 169 (442)
.+.++|+.++++++ +++++|++|+|+++++.+++.++. ++||.|+++.+.|+.+...+.. ..|+++
T Consensus 48 ~~~~~r~~la~~~g--------~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v 119 (402)
T TIGR02006 48 AVENARNQVAELIG--------ADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEV 119 (402)
T ss_pred HHHHHHHHHHHHhC--------CCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEE
Confidence 45677888888765 578899999999999999877653 6899999999999886655421 369999
Q ss_pred EEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC
Q 046900 170 VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS 249 (442)
Q Consensus 170 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~ 249 (442)
+.+++++ ++.+|++.+++.+.+ +++++++++|+||||.+.+ +++|.++|+++|+++++|++++...
T Consensus 120 ~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~v~~~~n~tG~~~~---~~~I~~l~~~~g~~livD~a~a~g~--- 185 (402)
T TIGR02006 120 TYLPPKS--NGLIDLEELKAAIRD------DTILVSIMHVNNEIGVIQD---IAAIGEICRERKVFFHVDAAQSVGK--- 185 (402)
T ss_pred EEEccCC--CCcCCHHHHHHhcCC------CCEEEEEECCCcCceeccc---HHHHHHHHHHcCCEEEEEcchhcCC---
Confidence 9999874 356899999998864 6789999999999999988 7788888999999999999997421
Q ss_pred CCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc---------cccCCCcHHHHHHHHH
Q 046900 250 SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM---------SSFTLISSQTQYLLAS 320 (442)
Q Consensus 250 ~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~---------~~~~~~s~~~q~~~~~ 320 (442)
.+..+... +..+++.|.+|.+|.+| +|++++.++.... +... ...++.+.....++..
T Consensus 186 -~~~~~~~~---------~~D~~~~s~~K~~gp~G--~G~l~~~~~~~~~-~~~~~~g~~~~~~~~~gt~~~~~~~al~~ 252 (402)
T TIGR02006 186 -IPINVNEL---------KVDLMSISGHKIYGPKG--IGALYVRRKPRVR-LEALIHGGGHERGMRSGTLPTHQIVGMGE 252 (402)
T ss_pred -cccCcccc---------CCCEEEEehhhhcCCCc--eEEEEEccCCCCC-CCceecCCCccCCccCCCccHHHHHHHHH
Confidence 12222211 23367788999887446 7888875432221 1100 0112334444444444
Q ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC-----ceEEEEEecCCcccccChhhHHHHHHHHHHcCc
Q 046900 321 MLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGN-----AGLFCWMNLSPLLEEQTREGELALWDSMLHEVK 394 (442)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g 394 (442)
.++ ++.+.++...+++++.++++.+.|++. ++.+..+. +.+.+ .++.. +..++...+ .+
T Consensus 253 al~---~~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v--~f~~~-------~~~~~~~~l---~~ 317 (402)
T TIGR02006 253 AFR---IAKEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNV--SFNYV-------EGESLIMAL---KD 317 (402)
T ss_pred HHH---HHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEE--EEeCc-------CHHHHHHhc---CC
Confidence 443 233446667788888899999999875 55554211 11122 22211 123444333 38
Q ss_pred EEEeCCCCCCCC-----------------CCCEEEEEeecC-CHHHHHHHHHHHHHHHHHHH
Q 046900 395 LNISPGSSCHCS-----------------EPGWFRVCFANM-SEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 395 i~v~pg~~f~~~-----------------~~~~iRls~~~~-~~e~i~~~l~~l~~~l~~~~ 438 (442)
|.+..|..+... ..+++|+|++.. +++|++++++.|+++++.++
T Consensus 318 i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~ 379 (402)
T TIGR02006 318 LAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLR 379 (402)
T ss_pred EEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 998888776431 137899999732 89999999999999987753
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-22 Score=193.71 Aligned_cols=210 Identities=21% Similarity=0.291 Sum_probs=157.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----HhhhcCcEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD----LRWRTGIKIVP 171 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~~G~~v~~ 171 (442)
-..+|++++|++.+ .++.++++++++|+..++.+++++||+|+++.+.|...... +. ..|+++..
T Consensus 41 ~~~~le~~la~l~g----------~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~-~~g~~~~~ 109 (369)
T cd00614 41 TVDALEKKLAALEG----------GEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLP-KLGIEVTF 109 (369)
T ss_pred hHHHHHHHHHHHHC----------CCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHh-hcCeEEEE
Confidence 46788888888764 35677888889999999999999999999999999886543 33 37888888
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
++.+ |++.+++.+++ ++++|++.+|+||+|.+.+ +++|+++|+++|+++|+|++|+...+.
T Consensus 110 v~~~-------d~~~l~~~i~~------~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~--- 170 (369)
T cd00614 110 VDPD-------DPEALEAAIKP------ETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQ--- 170 (369)
T ss_pred eCCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcC---
Confidence 8743 57888888764 7899999999999999988 778889999999999999999864331
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhH
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFT 328 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~ 328 (442)
....+ +..+++.|+||.+|.+| ++.||++++++.+.+.++..... +.+++..++++...++.
T Consensus 171 --~~~~~---------g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~t---- 235 (369)
T cd00614 171 --RPLEL---------GADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKT---- 235 (369)
T ss_pred --Chhhh---------CCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCC----
Confidence 11112 33478999999997666 88999999664666665543332 34566666655544442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 329 ENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
+....++..++...+.+.|++.
T Consensus 236 ---l~~r~~~~~~na~~la~~L~~~ 257 (369)
T cd00614 236 ---LPLRMERHSENALKVAEFLEKH 257 (369)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHcC
Confidence 2334556677888888899876
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-22 Score=194.11 Aligned_cols=209 Identities=14% Similarity=0.218 Sum_probs=152.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH----hHhhhcCcEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR----DLRWRTGIKIVP 171 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~~G~~v~~ 171 (442)
-...|++.+|++++ .++.++++++++++..++.+++++||+|+++.|+|..... .+. ..|+++..
T Consensus 65 ~~~~le~~lA~l~g----------~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~-~~Gi~v~~ 133 (398)
T PRK08249 65 TVQAFEEKVRILEG----------AEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLP-RMGVDVTL 133 (398)
T ss_pred HHHHHHHHHHHHhC----------CCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHh-hCCeEEEE
Confidence 45788999999875 3456777777899999999999999999999999987543 344 37888877
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
++. .|++.+++++++ ++++|++++|+||||.+++ +++|+++|+++++++|+|++|+......
T Consensus 134 vd~-------~d~e~l~~~i~~------~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~-- 195 (398)
T PRK08249 134 CET-------GDHEQIEAEIAK------GCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQN-- 195 (398)
T ss_pred cCC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccCC--
Confidence 652 578999998865 7899999999999999998 6678888999999999999998644221
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee-EEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhH
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV-GTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFT 328 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri-G~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~ 328 (442)
++ .. +.-++++|+||.+|.+|.++ ||+++ ++.+.+.++..... ..+++..++.+..-++.
T Consensus 196 --~l-~~---------~~Divv~S~sK~l~g~~~~~gG~vv~-~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~t---- 258 (398)
T PRK08249 196 --PL-AL---------GADLVIHSATKFLSGHADALGGVVCG-SKELMEQVYHYREINGATMDPMSAYLILRGMKT---- 258 (398)
T ss_pred --ch-hh---------CCCEEeccCceecCCCCCceEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcch----
Confidence 11 12 12267899999998677776 56665 56666665544332 34455555555444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 329 ENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
+....++..+++..+.+.|+++
T Consensus 259 ---L~~R~~~~~~na~~la~~L~~~ 280 (398)
T PRK08249 259 ---LKLRVRQQQESAMALAKYLQTH 280 (398)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHcC
Confidence 2334455567778888888765
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=192.48 Aligned_cols=209 Identities=20% Similarity=0.216 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcC----hHHhHhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPG----FDRDLRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~----~~~~~~~~~G~~v~~v 172 (442)
...|++.+|++.+ . .+.+ +++++++++.+++.+++++||+|+++.|.|.. +...+. ..|.+++.+
T Consensus 62 ~~~Le~~lA~l~g--------~-~~~v-~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~-~~g~~v~~v 130 (405)
T PRK08776 62 RDLLGEALAELEG--------G-AGGV-ITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAK-KGHFALITA 130 (405)
T ss_pred HHHHHHHHHHHhC--------C-CceE-EEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHH-hcCcEEEEE
Confidence 4677777777654 1 3455 45555799999999999999999999999987 333344 368888887
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+. .|++.+++.+++ ++|+|++++|+||||.+.+ +++|+++|+++|++||+|++|..... +
T Consensus 131 ~~-------~d~~~l~~~i~~------~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~~----~ 190 (405)
T PRK08776 131 DL-------TDPRSLADALAQ------SPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPAL----Q 190 (405)
T ss_pred CC-------CCHHHHHHhcCc------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCccccc----C
Confidence 64 378889888764 7899999999999999966 78888999999999999999985221 1
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCC-CceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHH
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLP-GFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~-G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~ 329 (442)
.++ .+. .-+++.|++|.++.+ ++..|+++++++.+.+.+...... ..++++.+.++...++
T Consensus 191 ~pl-~~g---------aDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~------ 254 (405)
T PRK08776 191 KPL-EFG---------ADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLR------ 254 (405)
T ss_pred Ccc-ccc---------CCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhC------
Confidence 222 121 127889999999645 578899988677776655433222 2356666666554443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
++..+.++..++...+.+.|+++
T Consensus 255 -tl~~r~~~~~~na~~la~~L~~~ 277 (405)
T PRK08776 255 -TLDARLRVHQENADAIAALLDGH 277 (405)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHcC
Confidence 34556667777888888888765
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-22 Score=195.43 Aligned_cols=217 Identities=16% Similarity=0.220 Sum_probs=151.6
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHh---hhc
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLR---WRT 165 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~---~~~ 165 (442)
.+|+++ -...|++++|++++ .+..+++++++.++..++.+++++||+|+++.|.|+.+...+. ...
T Consensus 60 ~r~~~p-~~~~Le~~lA~l~G----------~~~~~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~ 128 (398)
T PRK07504 60 SRYSNP-TVDMFEKRMCALEG----------AEDARATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRY 128 (398)
T ss_pred ecCCCc-hHHHHHHHHHHHhC----------CCeeeEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhc
Confidence 456554 35899999999875 2233457777888888888888999999999999997644332 136
Q ss_pred CcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcC
Q 046900 166 GIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGS 245 (442)
Q Consensus 166 G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~ 245 (442)
|++++.++ .+|++.+++++++ ++|+|++++|+||||.+++ +++|.++|+++|+++|+|++|+..
T Consensus 129 G~~v~~vd-------~~d~e~l~~ai~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~ 192 (398)
T PRK07504 129 GIESTLVD-------GLDLDNWEKAVRP------NTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATP 192 (398)
T ss_pred CeEEEEEC-------CCCHHHHHHhcCc------CceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCcccc
Confidence 88888875 1688999998864 7899999999999999998 777888888999999999999864
Q ss_pred CCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeE-EEeecCHHHHHHHHHc-ccc-CCCcHHHHHHHHHHh
Q 046900 246 AFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVG-TIYSYNDKVVTTARRM-SSF-TLISSQTQYLLASML 322 (442)
Q Consensus 246 ~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG-~i~~~~~~~~~~~~~~-~~~-~~~s~~~q~~~~~~l 322 (442)
.+. ....+ +..+++.|+||.++.+|+|+| +++++++.+.+.++.. ... ..+++..++.+..-+
T Consensus 193 ~~~-----~~~~~---------gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L 258 (398)
T PRK07504 193 LFQ-----KPLEL---------GAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGL 258 (398)
T ss_pred ccC-----Cchhh---------CCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Confidence 431 11122 334788999999988999996 5556444444333322 212 234454444444444
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 323 SNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
+. +....++..++...+.+.|+++
T Consensus 259 ~t-------l~~R~~~~~~na~~la~~L~~~ 282 (398)
T PRK07504 259 ET-------LPVRVRQQTESAAAIADFLAGH 282 (398)
T ss_pred ch-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 33 2333444456677777888765
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-22 Score=192.10 Aligned_cols=218 Identities=17% Similarity=0.184 Sum_probs=158.7
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHh---hh
Q 046900 88 NALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLR---WR 164 (442)
Q Consensus 88 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~---~~ 164 (442)
..+|+.+ ....|++++|++.+ .+++++|+|+++++.+++.+++++||+|+++.|+|......+. ..
T Consensus 47 Y~R~~np-t~~~Le~~lA~leg----------~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~ 115 (388)
T PRK08861 47 YTRSGNP-NRGLLEQTLSELES----------GKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANK 115 (388)
T ss_pred ccCCCCc-hHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhc
Confidence 3455554 46889999999875 5899999999999999999999999999999999986443221 12
Q ss_pred cCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc
Q 046900 165 TGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG 244 (442)
Q Consensus 165 ~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~ 244 (442)
.|++++.++. .|++.+++++++ ++++|++++|+||||.+++ +++|+++|+++++++|+|++|..
T Consensus 116 ~gi~v~~vd~-------~d~e~l~~~i~~------~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~ 179 (388)
T PRK08861 116 GDFKVQFVDQ-------SDAAALDAALAK------KPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLT 179 (388)
T ss_pred CCeEEEEECC-------CCHHHHHHhcCc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccc
Confidence 5778777752 478899888764 7899999999999999999 56778888899999999999986
Q ss_pred CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCC-CCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHH
Q 046900 245 SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGL-PGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASM 321 (442)
Q Consensus 245 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~-~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~ 321 (442)
..+.. ++ .+ +--+++.|++|.++- .++..|++++.++.+.+.++..... ..+++...+.+..-
T Consensus 180 ~~~~~----pl-~~---------GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rg 245 (388)
T PRK08861 180 PVLQK----PL-EL---------GADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRG 245 (388)
T ss_pred cccCC----Cc-cc---------CCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhc
Confidence 43321 11 12 223788999999863 3478899988666666555543333 33466666666665
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
+++.. -+.++..++...+.+.|+++
T Consensus 246 l~Tl~-------lR~~~~~~~a~~~a~~L~~~ 270 (388)
T PRK08861 246 IRTLG-------ARMRVHEESAQQILAYLQTQ 270 (388)
T ss_pred CCCHH-------HHHHHHHHHHHHHHHHHHhC
Confidence 65432 23344455667777888775
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=191.22 Aligned_cols=291 Identities=13% Similarity=0.121 Sum_probs=193.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh--------------cCCCCeEEEcCCCCcChHHhH
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL--------------ADPGDALLVPTPYYPGFDRDL 161 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l--------------~~~gd~Vl~~~p~y~~~~~~~ 161 (442)
-+.+|.+++|+|++ .+..++.+.+..+...++.+| ..++|.|+.+.-+|......+
T Consensus 148 ~h~~LE~~LA~f~g----------~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~ 217 (476)
T PLN02955 148 YHRLLESSLADLKK----------KEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGV 217 (476)
T ss_pred HHHHHHHHHHHHHC----------CCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHH
Confidence 34678889999875 566777787788888887776 246678888888999988888
Q ss_pred hhhc----CcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCcCCCHHHHHHHHHHHHhcCcEE
Q 046900 162 RWRT----GIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNP-SNPLGATIQRSVLEELLDFATRKNIHL 236 (442)
Q Consensus 162 ~~~~----G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~~~~~~~l~~l~~~~~~~~~~v 236 (442)
+. . +++++.++. -|++.|++.+++.. .+.+ ++++.+ .+++|.+.+ +.+|.++|++||+++
T Consensus 218 ~l-s~~~~~a~~~~f~H-------ND~~~Le~~L~~~~---~~~~-~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~L 282 (476)
T PLN02955 218 RL-AERQGNVEVFVYRH-------CDMYHLNSLLSSCK---MKRK-VVVTDSLFSMDGDFAP---MEELSQLRKKYGFLL 282 (476)
T ss_pred Hh-ccccCCceEEEeCC-------CCHHHHHHHHHhCC---CCce-EEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEE
Confidence 75 4 577777764 37899999997642 1233 455555 789999999 777778888999999
Q ss_pred EEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc---CCCcH-
Q 046900 237 VSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF---TLISS- 312 (442)
Q Consensus 237 i~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~---~~~s~- 312 (442)
|+||+|+.++++.. .........- ..+..|+++||||++|..| ||+++ ++.+++.++..... .+..+
T Consensus 283 iVDEAH~~Gv~G~~-G~G~~e~~g~----~~di~ii~~TLsKA~G~~G---Gfi~g-s~~~~~~l~~~~~~~ifStalpp 353 (476)
T PLN02955 283 VIDDAHGTFVCGEN-GGGVAEEFNC----EADVDLCVGTLSKAAGCHG---GFIAC-SKKWKQLIQSRGRSFIFSTAIPV 353 (476)
T ss_pred EEcccccCceecCC-CCcHHHHhCC----CCCCcEEEEeCccchhccC---ceeec-HHHHHHHHHHhCCCCeecccccH
Confidence 99999998777542 1222222110 1367789999999998776 99998 45677777654333 22222
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHc
Q 046900 313 QTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHE 392 (442)
Q Consensus 313 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 392 (442)
+...++.+.+. .+.. -...+++++++.+++.+. .|+.+ .+. .+.+.+... ..+.+++++|+++
T Consensus 354 ~~aaa~laal~---l~~~-~~~~r~~L~~n~~~fr~~---~G~~~---~sP-I~pI~ig~~------~~a~~~~~~L~~~ 416 (476)
T PLN02955 354 PMAAAAYAAVV---VARK-EKWRRKAIWERVKEFKAL---SGVDI---SSP-IISLVVGNQ------EKALKASRYLLKS 416 (476)
T ss_pred HHHHHHHHHHH---HHhc-CHHHHHHHHHHHHHHHHh---cCCCC---CCC-EEEEEeCCH------HHHHHHHHHHHHC
Confidence 22222222222 1111 123556677777766663 35543 222 333444332 2367788998877
Q ss_pred CcEEEeCCCCCCC-CCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 393 VKLNISPGSSCHC-SEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 393 ~gi~v~pg~~f~~-~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
||.+.+-..... .+...+||++. ..++++++.+++.|.+++....
T Consensus 417 -Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~~~ 463 (476)
T PLN02955 417 -GFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDFDN 463 (476)
T ss_pred -CCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 999987443222 22346999996 3489999999999998876544
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.2e-22 Score=191.17 Aligned_cols=214 Identities=18% Similarity=0.156 Sum_probs=151.3
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---h
Q 046900 88 NALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---R 164 (442)
Q Consensus 88 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~ 164 (442)
..+|+++ ....|++++|++. ..+ .++++++++++..++.+++++||+|+++.|+|..+...+.. .
T Consensus 45 y~ry~~p-~~~~Le~~lA~l~----------~~~-~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~ 112 (366)
T PRK07582 45 YGRASNP-TWRALEAALGELE----------GAE-ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAP 112 (366)
T ss_pred eECCCCc-cHHHHHHHHHHHc----------CCC-EEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhc
Confidence 4557654 6799999999985 134 45555556799999999999999999999999887664421 3
Q ss_pred cCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc
Q 046900 165 TGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG 244 (442)
Q Consensus 165 ~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~ 244 (442)
.|++++.++.++.. + . +. .++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..
T Consensus 113 ~G~~v~~v~~~~~~------~---~-~~------~~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~ 173 (366)
T PRK07582 113 LGVTVREAPTAGMA------E---A-AL------AGADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTAT 173 (366)
T ss_pred CeEEEEEECCCChH------H---H-hc------cCceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCC
Confidence 79999999865311 1 1 11 27889999999999998876 88889999999999999999964
Q ss_pred CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccC-CCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHH
Q 046900 245 SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDL-GLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASM 321 (442)
Q Consensus 245 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~ 321 (442)
.. +. .++ ++ +.-++++|+||.+ |.+|+|+||++++++.+.+.++..... ...++.....+...
T Consensus 174 ~~--~~--~p~-~~---------g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~ 239 (366)
T PRK07582 174 PL--GQ--RPL-EL---------GADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRS 239 (366)
T ss_pred cc--cc--Cch-hc---------CCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence 21 21 121 12 1126789999998 456799999998666777666544333 23456666666666
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
++..+ ...++..++...+.+.|+++
T Consensus 240 l~tl~-------~R~~~~~~na~~la~~L~~~ 264 (366)
T PRK07582 240 LGTLG-------LRFARQCANALAVAELLAGH 264 (366)
T ss_pred cccHH-------HHHHHHHHHHHHHHHHHHhC
Confidence 65422 22344556777888888775
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-22 Score=193.09 Aligned_cols=172 Identities=17% Similarity=0.360 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS 176 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~ 176 (442)
.++++++++++.+..+ .+++++|+|+++++.+++.++ ++|||.|+++.|+|..+...+.. .|++++.+++++
T Consensus 30 g~~~~~~e~~la~~~g------~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~-~G~~~v~vd~d~ 102 (376)
T TIGR02379 30 GPFSRRCETWLENRTG------TKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVL-RGAKIVFVDIRP 102 (376)
T ss_pred cHHHHHHHHHHHHHhC------CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHH-cCCEEEEEecCC
Confidence 4677788887776644 578999999999999998887 89999999999999999888884 899999999986
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC-CCCCCcccH
Q 046900 177 SNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA-FSSSEFVSI 255 (442)
Q Consensus 177 ~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~-~~~~~~~s~ 255 (442)
+ +|.+|++.+++++++ ++|+|+ |+||+|...+ +.+|.++|+++|++||+|++|+.+. +++....
T Consensus 103 ~-~~~~d~~~le~~i~~------~tk~Ii---p~~~~G~~~d---~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g-- 167 (376)
T TIGR02379 103 D-TMNIDETLIESAITH------RTKAIV---PVHYAGVACD---MDTIMALANKHQLFVIEDAAQGVMSTYKGRALG-- 167 (376)
T ss_pred C-cCCCCHHHHHHhcCc------CceEEE---EeCCCCCccC---HHHHHHHHHHCCCEEEEECccccCCccCCcccC--
Confidence 4 588999999998864 788775 6788999887 6688888999999999999998654 4443211
Q ss_pred HHHHhhhcCCCCCcEEEEecCc----ccCCCCCceeEEEeecCHHHHHHHHHcc
Q 046900 256 AEILEARQYKDSERVHIVYSLS----KDLGLPGFRVGTIYSYNDKVVTTARRMS 305 (442)
Q Consensus 256 ~~~~~~~~~~~~~~vi~~~S~S----K~~g~~G~RiG~i~~~~~~~~~~~~~~~ 305 (442)
.+..+++|| |.+. +|.+.|+++++++.+.+.++.+.
T Consensus 168 -------------~~~~~~~fSf~~~K~l~-~g~~gG~v~~~~~~~~~~~~~~~ 207 (376)
T TIGR02379 168 -------------SIGHLGTFSFHETKNYT-SGGEGGALLINDQAFIERAEIIR 207 (376)
T ss_pred -------------CCCCEEEEeCCCCCcCc-ccCCceEEEECCHHHHHHHHHHH
Confidence 111234444 8885 78899999998788877766443
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-22 Score=192.54 Aligned_cols=215 Identities=19% Similarity=0.262 Sum_probs=152.5
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH----HhHhhh
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD----RDLRWR 164 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~ 164 (442)
.+|+.+ -...|++++|++.+ .+..++++++++++.+++.+++++||.|+++.|.|.... ..+. .
T Consensus 54 ~r~~~p-~~~~le~~lA~l~g----------~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~-~ 121 (391)
T TIGR01328 54 SRLGNP-TVSNLEGRIAFLEG----------TEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALT-K 121 (391)
T ss_pred eCCCCc-hHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHh-c
Confidence 445554 35789999999976 234678888889999999999999999999999887533 3334 3
Q ss_pred cCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc
Q 046900 165 TGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG 244 (442)
Q Consensus 165 ~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~ 244 (442)
.|+++..++++ |++.+++.+.+ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.
T Consensus 122 ~G~~~~~vd~~-------d~e~l~~~i~~------~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~ 185 (391)
T TIGR01328 122 FGIQVDFINMA-------IPEEVKAHIKD------NTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFAT 185 (391)
T ss_pred CCeEEEEECCC-------CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCch
Confidence 79998888753 67889888865 7899999999999999998 77788888899999999999986
Q ss_pred CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee-EEEeecCHHHHHHHHHc--ccc--CCCcHHHHHHHH
Q 046900 245 SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV-GTIYSYNDKVVTTARRM--SSF--TLISSQTQYLLA 319 (442)
Q Consensus 245 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri-G~i~~~~~~~~~~~~~~--~~~--~~~s~~~q~~~~ 319 (442)
.... . ++ .. +..+++.|+||.+|.+|.++ |++++ ++.+.+.++.. ... ..+++...+.+.
T Consensus 186 ~~~~-~---~~-~~---------g~Divv~S~sK~lgg~g~~~gG~v~~-~~~li~~l~~~~~~~~~g~~l~~~~a~l~l 250 (391)
T TIGR01328 186 PMLT-N---PV-AL---------GVDVVVHSATKYIGGHGDVVAGLICG-KAELLQQIRMVGIKDMTGSVISPFDAWLIL 250 (391)
T ss_pred hccC-C---ch-hc---------CCCEEEccccccccCCCCceEEEEEc-CHHHHHHHHHHHHHhCCCCCCCcHHHHHHH
Confidence 4331 1 11 11 22377899999999888775 66666 56655555432 112 234444444444
Q ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 320 SMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
..++. +....++..++...+.+.|+++
T Consensus 251 ~~L~t-------l~~r~~~~~~na~~la~~L~~~ 277 (391)
T TIGR01328 251 RGLKT-------LNIRMKRHSENAMKVAEYLKSH 277 (391)
T ss_pred hCcCc-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 43332 2334455566777778888765
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=189.82 Aligned_cols=212 Identities=17% Similarity=0.239 Sum_probs=150.2
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---hcCcEEEE
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---RTGIKIVP 171 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~~G~~v~~ 171 (442)
....+|++++|++.+. +..++++++++++.+++.+++++||+|+++.|+|+.....+.. ..|+++..
T Consensus 61 p~~~~Le~~lA~~~g~----------~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~ 130 (388)
T PRK07811 61 PTRTALEEQLAALEGG----------AYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTP 130 (388)
T ss_pred ccHHHHHHHHHHHhCC----------CceEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEE
Confidence 4678999999999762 2234445668999999999999999999999999864433221 25777777
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
++. .|++.+++.+++ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.....
T Consensus 131 ~d~-------~d~e~l~~~i~~------~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~--- 191 (388)
T PRK07811 131 VDL-------SDLDAVRAAITP------RTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQ--- 191 (388)
T ss_pred eCC-------CCHHHHHHhcCc------CCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCccccC---
Confidence 653 378999988865 7899999999999998866 788888999999999999999864321
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcccc-C-CCcHHHHHHHHHHhcCchhH
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSSF-T-LISSQTQYLLASMLSNKKFT 328 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~-~-~~s~~~q~~~~~~l~~~~~~ 328 (442)
.++ .. +..+++.|+||.++.+| .+.||++++++.+.+.++..... + ..++.....+...++.
T Consensus 192 -~p~-~~---------gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~t---- 256 (388)
T PRK07811 192 -QPL-AL---------GADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKT---- 256 (388)
T ss_pred -Cch-hh---------CCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc----
Confidence 121 12 22378899999997554 57899998767776665544333 2 2344444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 329 ENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
+....++..++...+.+.|+++
T Consensus 257 ---l~~R~~~~~~na~~la~~L~~~ 278 (388)
T PRK07811 257 ---LAVRMDRHSENAEAVAEFLAGH 278 (388)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhC
Confidence 2333444566777788888765
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=190.23 Aligned_cols=214 Identities=22% Similarity=0.282 Sum_probs=151.6
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH----HhHhhhc
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD----RDLRWRT 165 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~~ 165 (442)
+|+.+ -...|++++|++.+ .+..++++++++++.+++.+++++||+|+++.|.|.... ..+. ..
T Consensus 61 r~~~p-~~~~le~~lA~l~g----------~~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~-~~ 128 (403)
T PRK07503 61 RISNP-TLALLEQRMASLEG----------GEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLG-EF 128 (403)
T ss_pred CCCCc-hHHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHh-hC
Confidence 44443 46889999998875 233566677788999999999999999999999997633 2344 37
Q ss_pred CcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcC
Q 046900 166 GIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGS 245 (442)
Q Consensus 166 G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~ 245 (442)
|+++..++.+ |++.+++.+++ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|+..
T Consensus 129 G~~v~~vd~~-------d~~~l~~~i~~------~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~ 192 (403)
T PRK07503 129 GVTVRHVDLT-------DPAALKAAISD------KTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTP 192 (403)
T ss_pred CEEEEEeCCC-------CHHHHHHhcCc------cCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccc
Confidence 9998888753 68899988865 7899999999999999988 778888888999999999999864
Q ss_pred CCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHc--ccc--CCCcHHHHHHHHH
Q 046900 246 AFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRM--SSF--TLISSQTQYLLAS 320 (442)
Q Consensus 246 ~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~--~~~--~~~s~~~q~~~~~ 320 (442)
.. .. ++ .+ +..++++|+||.+|.+| +|.||++. ++.+.+.++.. ... ..++++.++.+..
T Consensus 193 ~~-~~---~l-~~---------g~Di~v~S~tK~l~g~gd~~gG~v~~-~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~ 257 (403)
T PRK07503 193 YL-QR---PL-EL---------GADLVVHSATKYLGGHGDITAGLVVG-GKALADRIRLEGLKDMTGAVMSPFDAFLLMR 257 (403)
T ss_pred cc-CC---ch-hh---------CCCEEEccccccccCCCceeEEEEEc-CHHHHHHHHhhhHHhCcCCCCCHHHHHHHHc
Confidence 32 21 22 12 22378899999998665 78899886 56666555422 221 3456666655555
Q ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 321 MLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
.++. +....++..++...+.+.|+++
T Consensus 258 ~L~t-------l~~r~~~~~~na~~~a~~L~~~ 283 (403)
T PRK07503 258 GLKT-------LALRMDRHCASAQAVAEWLARH 283 (403)
T ss_pred Ccch-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 4442 2222233345666777777765
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=192.76 Aligned_cols=216 Identities=16% Similarity=0.217 Sum_probs=156.6
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcC----hHHhHhhh
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPG----FDRDLRWR 164 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~----~~~~~~~~ 164 (442)
.+|+.+ ...+|++++|++.+ .++.+++++++.++..++.+++++||+|+++...|.+ +...++ .
T Consensus 65 ~r~~~p-~~~~le~~lA~l~g----------~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~-~ 132 (403)
T PRK07810 65 SRYGNP-TVSMFEERLRLIEG----------AEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILP-R 132 (403)
T ss_pred eCCCCc-hHHHHHHHHHHHhC----------CCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHH-H
Confidence 456655 36789999999875 4477888888899999998999999999998866644 344455 3
Q ss_pred cCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc
Q 046900 165 TGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG 244 (442)
Q Consensus 165 ~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~ 244 (442)
.|++++.++. .|++.+++++++ ++++|++++|+||||.+.+ +++|+++|+++++++|+|++|+.
T Consensus 133 ~G~~v~~vd~-------~d~~~l~~ai~~------~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~ 196 (403)
T PRK07810 133 WGVETVFVDG-------EDLSQWEEALSV------PTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFAT 196 (403)
T ss_pred cCcEEEEECC-------CCHHHHHHhcCc------CceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCc
Confidence 7999998863 378999998875 7899999999999999987 78888889999999999999986
Q ss_pred CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee-EEEeecCHHHHHHHHHc-ccc-CCCcHHHHHHHHHH
Q 046900 245 SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV-GTIYSYNDKVVTTARRM-SSF-TLISSQTQYLLASM 321 (442)
Q Consensus 245 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri-G~i~~~~~~~~~~~~~~-~~~-~~~s~~~q~~~~~~ 321 (442)
..+.. ++ .+ +..+++.|++|.++..|.++ |+++++++.+.+.++.. ... ..+++..++++...
T Consensus 197 ~~~~~----~~-~~---------gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~ 262 (403)
T PRK07810 197 PLLQR----GL-PL---------GADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKG 262 (403)
T ss_pred cccCC----hh-hc---------CCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence 44321 11 11 23478899999998788887 88887555444434432 222 34677777766666
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
|+. +....++..++...+.+.|+++
T Consensus 263 L~t-------l~~R~~~~~~~a~~~a~~L~~~ 287 (403)
T PRK07810 263 LET-------LALRVRHSNASALRIAEFLEGH 287 (403)
T ss_pred cCc-------HHHHHHHHHHHHHHHHHHHhcC
Confidence 554 2333444455566677778765
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-22 Score=194.98 Aligned_cols=272 Identities=16% Similarity=0.168 Sum_probs=182.6
Q ss_pred CCcEEEecChHHHHHHHHHhhcC---------CC-CeEEEcCCCCcChHHhHhhhcCc-------------EEEEEecCC
Q 046900 120 LNRIVVTAGATAANELLTFILAD---------PG-DALLVPTPYYPGFDRDLRWRTGI-------------KIVPIHCDS 176 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~---------~g-d~Vl~~~p~y~~~~~~~~~~~G~-------------~v~~v~~~~ 176 (442)
.+.+++++++++|+..+++++.. +| +.|++..-+|.+....+. ..+. .+..++.
T Consensus 98 ~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-- 174 (401)
T PRK00854 98 SHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIV-GFSTDPDARGGFGPFTPGFRVVPF-- 174 (401)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHH-hccCCccccccCCCCCCCeEEeCC--
Confidence 46899999999999999988842 23 577777777766433222 1111 2222221
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHH-HHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccH
Q 046900 177 SNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRS-VLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSI 255 (442)
Q Consensus 177 ~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~-~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~ 255 (442)
.|++.|++.+.+ ++++|++++|+||+|.+++.+ .+++|.++|++||+++|+||+|..+.+.+.. +
T Consensus 175 -----~d~~~le~~i~~------~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~---~ 240 (401)
T PRK00854 175 -----GDAEALEAAITP------NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKL---L 240 (401)
T ss_pred -----CCHHHHHHHhCC------CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchH---h
Confidence 378999988854 789999999999999999755 5999999999999999999999875544421 1
Q ss_pred HHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHHHhcCchhHHHHH
Q 046900 256 AEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLASMLSNKKFTENYI 332 (442)
Q Consensus 256 ~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~ 332 (442)
..... + ..++ ++ .+||.++ .| +|+||+++ ++.+.+.+.... ..+..+++.+.++.+.|+.. ++
T Consensus 241 -~~~~~-g-~~~D-~~---~~~K~l~-gg~~~ig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l---~~-- 306 (401)
T PRK00854 241 -AEEHE-G-IEAD-VT---LIGKALS-GGFYPVSAVLS-NSEVLGVLKPGQHGSTFGGNPLACAVARAALKVL---TE-- 306 (401)
T ss_pred -HHhhc-C-CCCC-EE---Eeccccc-CCccCeEEEEE-cHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHH---HH--
Confidence 11100 0 0123 22 2479997 55 79999999 455555554322 22446788888888877532 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCee---ecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCC
Q 046900 333 KTNRERLQKRYQMIIEGLRSAGIEC---LKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPG 409 (442)
Q Consensus 333 ~~~~~~~~~~~~~l~~~L~~~g~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~ 409 (442)
....+.++++.+++.+.|++.+... ..+.|.++.+...++. ....++++.|+++ ||.+.+. ..+
T Consensus 307 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~~~~i~~~~~~------~~~~~~~~~L~~~-GV~v~~~------~~~ 373 (401)
T PRK00854 307 EGMIENAAEMGAYFLEGLRSIRSNIVREVRGRGLMLAVELEPEA------GGARQYCEALKER-GLLAKDT------HDH 373 (401)
T ss_pred cCHHHHHHHHHHHHHHHHHhhccCceEEEeccceEEEEEEecCc------hhHHHHHHHHHHC-CeEEecC------CCC
Confidence 2245777788888888888764332 2344554444222321 1356888888876 9999752 236
Q ss_pred EEEEEee-cCCHHHHHHHHHHHHHHHH
Q 046900 410 WFRVCFA-NMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 410 ~iRls~~-~~~~e~i~~~l~~l~~~l~ 435 (442)
++|+++. ..+++++++++++|++++.
T Consensus 374 ~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 374 TIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred EEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 8999974 3489999999999998763
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-24 Score=177.36 Aligned_cols=145 Identities=60% Similarity=1.046 Sum_probs=125.5
Q ss_pred cccchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCceeeeecccccccHHHHHHHHHhCCCCcccC-CC-CCCCCccc
Q 046900 12 VGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQPEASTWG-KG-APGFRENA 89 (442)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 89 (442)
..+|+++....||++++++.+|+.|.+++|++.+||.|+|+|+++||.++.+.+..++.+.+....+. ++ ...+.+..
T Consensus 7 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~np~G~I~lg~aEN~l~~dli~~~i~~~p~~d~~~~~~i~~~~~~~a 86 (153)
T PLN02994 7 QLLSKLALADKHGEASPYFAGWKAYDLNPFDLLHNPQGIIQMGLAENQLCSDLIEEWIEENPHADICTAEGTIDSFKDIA 86 (153)
T ss_pred hhhhhhcccccCCCCchHHHHHHHHhcCCCCcccCCCceEeeehhhhHhHHHHHHHHHhCCCccccCCcHHHHHHHHHHh
Confidence 36899999999999999999999999999999999999999999999999999999998865322211 11 11122335
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcC
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPG 156 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~ 156 (442)
.|+++.|.++||+++|+|+.++++..+.+++++|++|+|+++++..++.+|+++||.|++++|+|+.
T Consensus 87 ~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 87 LFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence 6999999999999999999998875566889999999999999999999999999999999999974
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=196.77 Aligned_cols=281 Identities=16% Similarity=0.184 Sum_probs=191.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC----CC-CeEEEcCCCCcChHHh---HhhhcCcE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD----PG-DALLVPTPYYPGFDRD---LRWRTGIK 168 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~----~g-d~Vl~~~p~y~~~~~~---~~~~~G~~ 168 (442)
+.++|+.++++++ +++++|++|+|+++++..++.++.. +| +.|++....|+.+... ++ ..|++
T Consensus 44 ~~~~r~~la~~~g--------~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~-~~G~~ 114 (353)
T TIGR03235 44 VERARKQVAEALG--------ADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALE-RNGFT 114 (353)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHHH-hcCCE
Confidence 4577777777765 6788999999999999999888753 55 7888887777765443 34 37999
Q ss_pred EEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCC
Q 046900 169 IVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS 248 (442)
Q Consensus 169 v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~ 248 (442)
++.++.++ ++.+|++.+++.+++ +++++++++|+||||.+++ +++|.++|+++|+++|+|++++....
T Consensus 115 v~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~~ivD~a~~~g~~- 182 (353)
T TIGR03235 115 VTYLPVDE--SGRIDVDELADAIRP------DTLLVSIMHVNNETGSIQP---IREIAEVLEAHEAFFHVDAAQVVGKI- 182 (353)
T ss_pred EEEEccCC--CCcCCHHHHHHhCCC------CCEEEEEEcccCCceeccC---HHHHHHHHHHcCCEEEEEchhhcCCc-
Confidence 99999875 356899999998854 6789999999999999998 78888889999999999999873221
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHH-HHHc---------cccCCCcHHHHHHH
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT-ARRM---------SSFTLISSQTQYLL 318 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~-~~~~---------~~~~~~s~~~q~~~ 318 (442)
...+.. .+..+++.|.+|.+|.+| +|++++.++.+... ++.. ...+..+.....++
T Consensus 183 ---~~~~~~---------~~~D~~~~s~~K~~gp~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 248 (353)
T TIGR03235 183 ---TVDLSA---------DRIDLISCSGHKIYGPKG--IGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGM 248 (353)
T ss_pred ---cccccc---------cCCCEEEeehhhcCCCCc--eEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHH
Confidence 112111 123366789999887556 79998855422110 1110 01223334444444
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc---eEEEEEecCCcccccChhhHHHHHHHHHHcCcE
Q 046900 319 ASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA---GLFCWMNLSPLLEEQTREGELALWDSMLHEVKL 395 (442)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi 395 (442)
.+.++ +..+..+..++++++.++++.+.|++.|+++..++. .-.+.+.++.. +..++...| ++ +|
T Consensus 249 ~~al~---~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~~-------~~~~v~~~L-~~-~i 316 (353)
T TIGR03235 249 GEAAE---IARRNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFSIDGV-------NSEALIVNL-RA-DA 316 (353)
T ss_pred HHHHH---HHHhhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEEeCCc-------CHHHHHHHH-hC-Ce
Confidence 44444 223345677888999999999999888888764322 11333333421 245666666 66 99
Q ss_pred EEeCCCCCCCCC--CCEEEEEeecCCHHHHHH
Q 046900 396 NISPGSSCHCSE--PGWFRVCFANMSEQTLEV 425 (442)
Q Consensus 396 ~v~pg~~f~~~~--~~~iRls~~~~~~e~i~~ 425 (442)
.+.+|..|.... +.++|.+++. +++++..
T Consensus 317 ~v~~g~~~~~~~~~~~~~l~~~g~-~~~~~~~ 347 (353)
T TIGR03235 317 AVSTGSACSSSKYEPSHVLQAMGL-DTDRARG 347 (353)
T ss_pred EEEchhhcCCCCCCCCHHHHHcCC-CHHHhCc
Confidence 999999986543 3468888876 5554443
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=191.36 Aligned_cols=295 Identities=15% Similarity=0.095 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc---CC------------CCeEEEcCCCCcChHHhHhh
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA---DP------------GDALLVPTPYYPGFDRDLRW 163 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~---~~------------gd~Vl~~~p~y~~~~~~~~~ 163 (442)
+....+|+.+.+. ...+.|+++++++++++.+++... .. ..+|+...-+|.+....+..
T Consensus 57 ~~~~~la~~l~~~------~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s 130 (382)
T PLN00144 57 IPQVELAKRLVAS------SFADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALA 130 (382)
T ss_pred HHHHHHHHHHHhc------CCCCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHh
Confidence 4445666666542 124689999999999999887542 10 24688888888776543321
Q ss_pred hcCcEEE---EEecCCCC---CCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHH--HHHHHHHHHhcCcE
Q 046900 164 RTGIKIV---PIHCDSSN---NFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSV--LEELLDFATRKNIH 235 (442)
Q Consensus 164 ~~G~~v~---~v~~~~~~---~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~--l~~l~~~~~~~~~~ 235 (442)
..+-... ..|..... .| .|++.+++.+.. .+++++++..-+|| |.+++.+. +++|.++|++||++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~-----~~~aavi~eP~q~~-gg~~~~~~~~~~~l~~l~~~~g~l 203 (382)
T PLN00144 131 LTSKEQYRTPFEPLMPGVTFVEY-GNLEAARKLIQK-----GKTAAVFVEPVQGE-GGIYPATKEFLQGLRALCDEAGAL 203 (382)
T ss_pred cCCCccccccCCCCCCCeEEeCC-CCHHHHHHhcCC-----CCeEEEEEccccCC-CCCccCCHHHHHHHHHHHHHcCCE
Confidence 1221100 00100000 01 268888887742 25666665533788 55555444 99999999999999
Q ss_pred EEEeccCCcCCCCCCCccc-HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcH
Q 046900 236 LVSDEIYSGSAFSSSEFVS-IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISS 312 (442)
Q Consensus 236 vi~De~y~~~~~~~~~~~s-~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~ 312 (442)
+|+||+|..+...+..+.. ...+. ++ +.||||.++ +|+|+||+++ ++.+.+.+.. ....+..++
T Consensus 204 lI~DEv~tg~gr~g~~~~~~~~~~~-------PD----i~t~sK~l~-~G~pig~v~~-~~~~~~~~~~~~~~~T~~~~p 270 (382)
T PLN00144 204 LVFDEVQCGLGRTGYLWAHEAYGVE-------PD----IMTLAKPLA-GGLPIGAVLV-TEKVASAINPGDHGSTFAGGP 270 (382)
T ss_pred EEEechhhCCCccchHhhhhhcCCC-------CC----EEEeccccc-CCcceEEEEE-cHHHHhccCCCCCCCCCCCCH
Confidence 9999999987665542211 11221 23 678999998 9999999999 4566665542 223356788
Q ss_pred HHHHHHH---HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHH
Q 046900 313 QTQYLLA---SMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSM 389 (442)
Q Consensus 313 ~~q~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l 389 (442)
+++.++. .+++++++ .++++.+.+.+ ++.+.+.+.+++........|+++|+++.. ....++..+
T Consensus 271 l~~aaa~a~l~~i~~~~~-~~~~~~~g~~l---~~~l~~~~~~~~~~~~vrg~G~~~~l~l~~--------~~~~~~~~~ 338 (382)
T PLN00144 271 LVCNAALAVLDKISKPGF-LASVAKKGEYL---RELLRRKLGGNPHVKEVRGVGLLVGIQLDV--------PAGPLVDAC 338 (382)
T ss_pred HHHHHHHHHHHHHhhchH-HHHHHHHHHHH---HHHHHHHHhhCCCceeeecCceEEEEEecC--------ccHHHHHHH
Confidence 8888888 55555443 45555565555 344445555543211222388999999832 135677887
Q ss_pred HHcCcEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHH
Q 046900 390 LHEVKLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 390 ~~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~ 437 (442)
+++ ||.+.|+.. ...+|++++. ++++++++++++|.+++.+.
T Consensus 339 ~~~-Gv~i~~~~~-----~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 339 RDS-GLLVLTAGK-----GDVVRLVPPLVISEAELEQAVEILADCLPAL 381 (382)
T ss_pred HHC-CeEEeecCC-----CCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence 766 999998621 3689999985 68999999999999998753
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=189.76 Aligned_cols=291 Identities=14% Similarity=0.126 Sum_probs=188.1
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH----hHhhh
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR----DLRWR 164 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~ 164 (442)
.+|+++ ...+|++++|++.+ .+++++++|+++++.+++.+++++||+|+++.|+|..+.. .+. .
T Consensus 60 ~r~~~p-t~~~Le~~lA~l~g----------~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~-~ 127 (394)
T PRK07050 60 GLHATP-TSLALAQRLAEIEG----------GRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLAR-D 127 (394)
T ss_pred CCCCCH-HHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHH-h
Confidence 445443 35778888887754 5689999999999999999999999999999999998664 344 3
Q ss_pred cCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc
Q 046900 165 TGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG 244 (442)
Q Consensus 165 ~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~ 244 (442)
.|++++.++.. +.+.+++.+++ ++|+|++++|+||+|.+ .++++|+++|+++++++|+|++|..
T Consensus 128 ~Gi~v~~vd~~-------~~~~l~~~i~~------~tklV~le~p~Np~~~~---~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 128 FGITVRFYDPL-------IGAGIADLIQP------NTRLIWLEAPGSVTMEV---PDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred cCeEEEEECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCccH---hhHHHHHHHHHHcCCEEEEECCccc
Confidence 79998887632 34678877754 78999999999999754 5699999999999999999999975
Q ss_pred CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHH
Q 046900 245 SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASM 321 (442)
Q Consensus 245 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~ 321 (442)
..+ ..+ +. .+..+++.|+||.++ ..+.+.|++++.++.+.+.++..... ..+++.....+...
T Consensus 192 ~~~----~~~---l~-------~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~ 257 (394)
T PRK07050 192 GLA----FKP---FE-------HGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRG 257 (394)
T ss_pred ccc----cCH---HH-------cCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 221 111 11 133588999999985 34456899888677776666544432 34455554444443
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-eec-----------------CCceEEEEEecCCcccccChhhH
Q 046900 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIE-CLK-----------------GNAGLFCWMNLSPLLEEQTREGE 382 (442)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~-----------------~~~g~~~~~~~~~~~~~~~~~~~ 382 (442)
+++ +..+.++..++...+.+.|+++ ++. +.. ..++ .+.+.+.... ..++.
T Consensus 258 l~t-------l~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~-~~s~~l~~~~---~~~~~ 326 (394)
T PRK07050 258 LPS-------LQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGG-LFSVVFDERY---SPAQV 326 (394)
T ss_pred CCc-------HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCce-EEEEEECCCC---CHHHH
Confidence 433 2223344445555677777765 222 110 1233 3334443311 11245
Q ss_pred HHHHHHHHHcCcEEEeCCCCCCC---------------CCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 383 LALWDSMLHEVKLNISPGSSCHC---------------SEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 383 ~~l~~~l~~~~gi~v~pg~~f~~---------------~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
.++.+.| +..++.+.-|..... ...+.||||++- |+.+.+++.|.+++..
T Consensus 327 ~~~~~~l-~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGl---E~~~dl~~dl~~al~~ 391 (394)
T PRK07050 327 DAFVEAL-ELFAIGWSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYIGL---EDEADLIADLEQALEA 391 (394)
T ss_pred HHHHHcC-CCCeeccccCCccceEeeCcccccchhhcCCCCCEEEEEeCc---CCHHHHHHHHHHHHHH
Confidence 5666665 333544443332210 112679999996 3456666666666654
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-21 Score=189.68 Aligned_cols=286 Identities=14% Similarity=0.121 Sum_probs=179.7
Q ss_pred CCcEEEecChHHHHHHHHHhhc----------CCCCeEEEcCCCCcChHHhHhhhcCcEEEE---EecCCCC--CCcCCH
Q 046900 120 LNRIVVTAGATAANELLTFILA----------DPGDALLVPTPYYPGFDRDLRWRTGIKIVP---IHCDSSN--NFQITP 184 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~----------~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~---v~~~~~~--~~~~d~ 184 (442)
.+.+++++++++++..+++.+. ..++.|++.+-+|.+.........+..... .+....- -...|+
T Consensus 88 ~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 167 (400)
T PTZ00125 88 YDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDV 167 (400)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCH
Confidence 3689999999999999988763 134678888888776543322112211100 0100000 001378
Q ss_pred HHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCH-HHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhc
Q 046900 185 QALEAAYKEAESKDMRVRGVLITNPSNPLGATIQR-SVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQ 263 (442)
Q Consensus 185 ~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~-~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~ 263 (442)
+.|++.++. .++++|++..++||||.+++. +.+++|.++|++||+++|+||+|..+.+.+..+ . .....
T Consensus 168 ~~le~~l~~-----~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~-~-~~~~~--- 237 (400)
T PTZ00125 168 EALEKLLQD-----PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLL-A-HDHEG--- 237 (400)
T ss_pred HHHHHHhCC-----CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhh-H-HHhcC---
Confidence 999998852 268888888889999999975 459999999999999999999998765545321 1 11110
Q ss_pred CCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc--cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 046900 264 YKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM--SSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQK 341 (442)
Q Consensus 264 ~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 341 (442)
.... +.++||.++.+++|+||+++ ++.+.+.+... ...+..+++.|.++.+.++... +. ...+..++
T Consensus 238 --~~pd---~~~~sK~l~~g~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~--~~---~~~~~~~~ 306 (400)
T PTZ00125 238 --VKPD---IVLLGKALSGGLYPISAVLA-NDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLK--EE---KLAENAQR 306 (400)
T ss_pred --CCCC---EEEEcccccCCCcCcEEEEE-cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH--hc---CHHHHHHH
Confidence 0112 23578999843359999999 45566555432 2234567788887766554211 00 11222333
Q ss_pred HHHHHHHHHHh----CCCe-eecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee
Q 046900 342 RYQMIIEGLRS----AGIE-CLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA 416 (442)
Q Consensus 342 ~~~~l~~~L~~----~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~ 416 (442)
+.+++.+.|++ .++. ...+ .|.++|+.++.... ..+.++++.|+++ ||.+.|+ ..+++||++.
T Consensus 307 ~~~~l~~~l~~l~~~~~~~~~~~~-~g~~~~v~~~~~~~----~~~~~~~~~l~~~-Gv~v~~~------~~~~lRi~~~ 374 (400)
T PTZ00125 307 LGEVFRDGLKELLKKSPWVKEIRG-KGLLNAIVFDHSDG----VNAWDLCLKLKEN-GLLAKPT------HDNIIRFAPP 374 (400)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEec-ccEEEEEEEccCcc----hHHHHHHHHHHHC-CeEEeec------CCCEEEEECC
Confidence 33444444433 2322 2333 56788887764110 1356788888766 9999885 2468999974
Q ss_pred -cCCHHHHHHHHHHHHHHHHHHH
Q 046900 417 -NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 417 -~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
..+++++++++++|.+++.++.
T Consensus 375 ~~~~~~~i~~~l~~l~~~l~~~~ 397 (400)
T PTZ00125 375 LVITKEQLDQALEIIKKVLKSFD 397 (400)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHh
Confidence 3489999999999999998764
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=184.23 Aligned_cols=294 Identities=15% Similarity=0.176 Sum_probs=179.9
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEec
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHC 174 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~ 174 (442)
.-+.++|+.+|++++ . ++.+++++|. .++..+...+.++||.|++..-.|......++. .....+.++
T Consensus 56 ~~~~~~e~~la~~~~--------~-~~~l~~~sG~-~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~-~~~~~~~~~- 123 (370)
T PRK05937 56 SLLDDLEHKIAHFHG--------A-PEAFIVPSGY-MANLGLCAHLSSVTDYVLWDEQVHISVVYSLSV-ISGWHQSFR- 123 (370)
T ss_pred HHHHHHHHHHHHHhC--------C-CeEEEECChH-HHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHH-cCCceEEec-
Confidence 346788888888876 2 2346666665 555566666777888888888888877777764 433333443
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s 254 (442)
..|+++|++.+++....+.++++|++++++|+||.+.| +++|.++|+++++++++||+|+...++.. ...
T Consensus 124 ------~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~-g~g 193 (370)
T PRK05937 124 ------HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDD-GKG 193 (370)
T ss_pred ------CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC-CCc
Confidence 25889999999754322224556778899999999999 77888889899999999999986444321 111
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHH-Hcccc---CCCcHHHHHHHHHHhcCchhHHH
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTAR-RMSSF---TLISSQTQYLLASMLSNKKFTEN 330 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~-~~~~~---~~~s~~~q~~~~~~l~~~~~~~~ 330 (442)
...... . .+..+.+.||||.+|..|. .+++. +.+...+. ..... ...+++...++.+.++ ++.+
T Consensus 194 ~~~~~~---~--~~~~~~~~tlsK~~g~~G~---~vl~~-~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~---~l~~ 261 (370)
T PRK05937 194 FCHSLG---Y--ENFYAVLVTYSKALGSMGA---ALLSS-SEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYD---FLSQ 261 (370)
T ss_pred hHHhhC---C--CCCcEEEEechhhhhcCce---EEEcC-HHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHH---HHHh
Confidence 111110 0 1223568999999997673 34443 33333333 21111 2344554444434333 2221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCE
Q 046900 331 YIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGW 410 (442)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~ 410 (442)
.....++++++.++++.+.|...+. + ....+.++.. ...++.+.|.++ ||.+... +. ...++
T Consensus 262 ~~~~~~~~l~~l~~~l~~~l~~~~~------~-~~~~i~~~~~-------~~~~~~~~L~~~-gi~v~~~--~~-~~~~~ 323 (370)
T PRK05937 262 EGELARKQLFRLKEYFAQKFSSAAP------G-CVQPIFLPGI-------SEQELYSKLVET-GIRVGVV--CF-PTGPF 323 (370)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCC------C-CEEEEEeCCh-------hHHHHHHHHHHC-CeeEEee--CC-CCCCE
Confidence 1233456677777777777653211 1 1111233321 245666666555 9988642 11 23468
Q ss_pred EEEEee-cCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 411 FRVCFA-NMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 411 iRls~~-~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
+|+|+. ..++++++++++.|.+++++..++
T Consensus 324 iRis~~~~~t~edid~l~~~L~~~~~~~~~~ 354 (370)
T PRK05937 324 LRVNLHAFNTEDEVDILVSVLATYLEKYQKN 354 (370)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 999997 228999999999999998876554
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-21 Score=187.06 Aligned_cols=215 Identities=20% Similarity=0.294 Sum_probs=153.8
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH----HhHhhh
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD----RDLRWR 164 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~ 164 (442)
.+|+.+ -..+|++.++++++ .+++++++++++++..++.+++++||+|+++.+.|.... ..+. .
T Consensus 49 ~r~~~p-~~~~le~~la~l~g----------~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~-~ 116 (380)
T TIGR01325 49 SRYANP-TVAAFEERIAALEG----------AERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILP-R 116 (380)
T ss_pred ecCCCc-hHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHH-H
Confidence 345543 36888999998864 356888999999999999999999999999999887632 3345 3
Q ss_pred cCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc
Q 046900 165 TGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG 244 (442)
Q Consensus 165 ~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~ 244 (442)
.|+++..++.+ |++.+++.+.+ ++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|+.
T Consensus 117 ~g~~v~~v~~~-------d~~~l~~~i~~------~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~ 180 (380)
T TIGR01325 117 FGIEVSFVDPT-------DLNAWEAAVKP------NTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFAT 180 (380)
T ss_pred hCCEEEEECCC-------CHHHHHHhcCC------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcc
Confidence 89999888753 67888887754 7899999999999999987 77888888999999999999986
Q ss_pred CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee-EEEeecCHHHHHHHHHccc-c-CCCcHHHHHHHHHH
Q 046900 245 SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV-GTIYSYNDKVVTTARRMSS-F-TLISSQTQYLLASM 321 (442)
Q Consensus 245 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri-G~i~~~~~~~~~~~~~~~~-~-~~~s~~~q~~~~~~ 321 (442)
..+.. ++ .+ +..+++.|+||.++.+|.++ |++++ ++.+.+.++.... . ..+++.... .+
T Consensus 181 ~~~~~----pl-~~---------g~Divv~S~sK~l~g~g~~~gG~vv~-~~~~~~~l~~~~~~~g~~~~p~~a~---~~ 242 (380)
T TIGR01325 181 PVLQQ----PL-KL---------GADVVVYSATKHIDGQGRVMGGVIAG-SEELMAEVAVYLRHTGPAMSPFNAW---VL 242 (380)
T ss_pred cccCC----ch-hh---------CCCEEEeeccceecCCCCeEEEEEEe-CHHHHHHHHHHHHhhCCCCCHHHHH---HH
Confidence 43211 11 22 23477889999998788877 67776 4555555543322 2 223444333 33
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
+...+. +....++..+++..+.+.|+++
T Consensus 243 l~~l~t----l~~r~~~~~~~a~~la~~L~~~ 270 (380)
T TIGR01325 243 LKGLET----LSLRMQKQFDSALAIAEWLQAQ 270 (380)
T ss_pred HhccCc----HHHHHHHHHHHHHHHHHHHHcC
Confidence 333222 3344556677788888888876
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=181.08 Aligned_cols=300 Identities=17% Similarity=0.213 Sum_probs=214.8
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHh--hcC----CCCeEEEcCCCCcChHHhHhhh--cCc
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFI--LAD----PGDALLVPTPYYPGFDRDLRWR--TGI 167 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~--l~~----~gd~Vl~~~p~y~~~~~~~~~~--~G~ 167 (442)
..++-|+.||+.++ +++++|++|+|+||+.++++.. ... .|.+|+++.-.|+...+.++.. .|+
T Consensus 45 ~ve~AR~~iA~llg--------a~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~ 116 (386)
T COG1104 45 AVEEAREQIAKLLG--------ADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGF 116 (386)
T ss_pred HHHHHHHHHHHHhC--------CCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCC
Confidence 45677888888876 7889999999999999998876 222 4789999999999998888741 399
Q ss_pred EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCC
Q 046900 168 KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAF 247 (442)
Q Consensus 168 ~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~ 247 (442)
+|.++|++.+| .+|+++|+++|++ ++.+|.+..-||-||.+.| +++|.++|+++++++.+|-+.+-
T Consensus 117 ~Vtyl~V~~~G--~v~~e~L~~al~~------~T~LVSim~aNnE~G~IQp---I~ei~~i~k~~~i~fHvDAvQa~--- 182 (386)
T COG1104 117 EVTYLPVDSNG--LVDLEQLEEALRP------DTILVSIMHANNETGTIQP---IAEIGEICKERGILFHVDAVQAV--- 182 (386)
T ss_pred eEEEeCCCCCC--eEcHHHHHHhcCC------CceEEEEEecccCeeeccc---HHHHHHHHHHcCCeEEEehhhhc---
Confidence 99999999865 5899999999986 7888888899999999999 88888999999999999999883
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHH-HH-----HHccccCCCcHHHHHHHHHH
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVT-TA-----RRMSSFTLISSQTQYLLASM 321 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~-~~-----~~~~~~~~~s~~~q~~~~~~ 321 (442)
|+-+..+..+.- .+..-|-+|..|..| +|.++..+..-.. .+ ++-...++.+.+...++..+
T Consensus 183 -Gkipi~~~~~~v---------D~ls~SaHK~~GpkG--iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A 250 (386)
T COG1104 183 -GKIPIDLEELGV---------DLLSFSAHKFGGPKG--IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKA 250 (386)
T ss_pred -CceeccccccCc---------ceEEeehhhccCCCc--eEEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHH
Confidence 443334333222 245568899999888 6888863321111 11 11122244455555555554
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeecC---CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEE
Q 046900 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSA--GIECLKG---NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLN 396 (442)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~ 396 (442)
++. ..+.+.....++...|+.+.+.|.+. ++.+... .-...+.+.++.. ..+.+... ++.+||.
T Consensus 251 ~~~---a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv-------~gE~ll~~-L~~~gI~ 319 (386)
T COG1104 251 AEI---AVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGV-------EGESLLLA-LDLAGIA 319 (386)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCC-------cHHHHHHh-ccccCeE
Confidence 442 23345667778888899999999875 3333322 1223444455543 13444444 4667999
Q ss_pred EeCCCCCCCC-----------------CCCEEEEEeecC-CHHHHHHHHHHHHHHHHHHHhh
Q 046900 397 ISPGSSCHCS-----------------EPGWFRVCFANM-SEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 397 v~pg~~f~~~-----------------~~~~iRls~~~~-~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
+..|+.|... ..+.+|+|++.. ++++++.+++.|.+++++++..
T Consensus 320 vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~~ 381 (386)
T COG1104 320 VSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLREL 381 (386)
T ss_pred EeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 9999998652 125799999832 8999999999999999988753
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-21 Score=185.37 Aligned_cols=211 Identities=21% Similarity=0.225 Sum_probs=150.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh--hcCcEEEEEe
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW--RTGIKIVPIH 173 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~--~~G~~v~~v~ 173 (442)
...+|++++|++++ .+++++++|+++++..++.+++++||+|+++.|.|..+...+.. ..|+++..++
T Consensus 54 ~~~~lE~~lA~l~g----------~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~ 123 (385)
T PRK08574 54 TLRPLEEALAKLEG----------GVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY 123 (385)
T ss_pred cHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC
Confidence 56899999999975 45788899999999999999999999999999999987765531 2577776653
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
+|++.+++.+++ .++++|++++|+||||.+++ +++|+++|+++|++||+|++|+.... ..
T Consensus 124 --------~d~~~l~~~i~~-----~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~----~~ 183 (385)
T PRK08574 124 --------PSTEDIIEAIKE-----GRTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLL----YR 183 (385)
T ss_pred --------CCHHHHHHhcCc-----cCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcccc----CC
Confidence 467888888753 26889999999999999999 67888999999999999999974221 11
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCce-eEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFR-VGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTEN 330 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R-iG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~ 330 (442)
++ .. +..+++.|+||.++.+|-. .|++++.++.+.+.++..... ..+++...+.+..-++.
T Consensus 184 ~l-~~---------GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~t------ 247 (385)
T PRK08574 184 PL-RH---------GADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKT------ 247 (385)
T ss_pred hh-hh---------CCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc------
Confidence 21 11 3348899999999756655 476777566666665543332 23445444444443432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 046900 331 YIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
+....++..++...+.+.|+++
T Consensus 248 -L~~R~~~~~~na~~la~~L~~~ 269 (385)
T PRK08574 248 -LEVRFERQCRNAMAIAEFLSEH 269 (385)
T ss_pred -HHHHHHHHHHHHHHHHHHHHcC
Confidence 2233344445667777777765
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-21 Score=186.17 Aligned_cols=286 Identities=16% Similarity=0.208 Sum_probs=188.9
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhh--c-
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWR--T- 165 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~--~- 165 (442)
.+|+.+ ...+|++++|++.+ .+++++++|+++|+.+++. ++++||+|+++.+.|..-...+... .
T Consensus 49 ~R~~~p-~~~~le~~lA~leg----------~~~~v~~~sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~~~~~ 116 (364)
T PRK07269 49 TRTKNP-TRAKLEETLAAIES----------ADYALATSSGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQEKEG 116 (364)
T ss_pred eCCCCc-cHHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHHHhcC
Confidence 445544 46899999999974 6789999999999999984 5699999999999998755443321 1
Q ss_pred CcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcC
Q 046900 166 GIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGS 245 (442)
Q Consensus 166 G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~ 245 (442)
+.+ + .|..|++.+++++++ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|...
T Consensus 117 ~~~---~------~~~~d~~~l~~~i~~------~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~ 178 (364)
T PRK07269 117 RFH---F------TYANTEEELIAAIEE------DTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSP 178 (364)
T ss_pred cEE---E------EecCCHHHHHHhcCc------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccc
Confidence 211 1 133688999998865 7899999999999999886 888888999999999999998643
Q ss_pred CCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHh
Q 046900 246 AFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASML 322 (442)
Q Consensus 246 ~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l 322 (442)
.+ . .++ .. +--+++.|++|.++-+| .=.|+++++++.+.+.++..... ..+++...+.+..-|
T Consensus 179 ~~-~---~pl-~~---------gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L 244 (364)
T PRK07269 179 IY-Q---RPI-EL---------GADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGL 244 (364)
T ss_pred cc-C---Cch-hh---------CCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCC
Confidence 22 1 121 22 22378899999996333 23588888666666655543322 245666666666555
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CC-eee-cCCceEEEEEecCCcccccChhhHHHHHHHH---------H
Q 046900 323 SNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GI-ECL-KGNAGLFCWMNLSPLLEEQTREGELALWDSM---------L 390 (442)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l---------~ 390 (442)
+. +..+.++..++...+.+.|+++ ++ ++. ++.||++.+ .+... +....+.+.+ -
T Consensus 245 ~t-------L~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf-~~~~~------~~~~~f~~~l~~~~~~~slG 310 (364)
T PRK07269 245 KT-------LSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISF-KVADE------TRIPHILNSLKVFTFAESLG 310 (364)
T ss_pred Cc-------HHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEE-EECCH------HHHHHHHHhCCcceEccCCC
Confidence 54 3344455567777888888876 33 343 667775554 44321 1122333222 1
Q ss_pred HcCcEEEeCCCCCCC-----------CCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 391 HEVKLNISPGSSCHC-----------SEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 391 ~~~gi~v~pg~~f~~-----------~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
....+.+.|++.+.. -.++.||||++- |+.+.+++-|.++++
T Consensus 311 ~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGl---E~~~dli~dl~~al~ 363 (364)
T PRK07269 311 GVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGI---EDARDLIADLKQALE 363 (364)
T ss_pred CcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHhc
Confidence 222556666554322 124689999996 456667777777653
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-20 Score=182.87 Aligned_cols=333 Identities=13% Similarity=0.124 Sum_probs=205.9
Q ss_pred CCCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCcc
Q 046900 43 ESTNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKF 118 (442)
Q Consensus 43 ~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~ 118 (442)
.+.....+||+..+ .+.++ .+.+.+.+.+....... ....| ..+....+++.+.+..
T Consensus 30 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~--------~~~~~-----~~~~~~~la~~L~~~~------ 90 (397)
T TIGR03246 30 WDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWH--------IGNGY-----TNEPVLRLAKKLVDAT------ 90 (397)
T ss_pred EeCCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccc--------ccCcc-----CCHHHHHHHHHHHhhC------
Confidence 34456778998764 34443 35555555444321000 00111 1233445555555432
Q ss_pred CCCcEEEecChHHHHHHHHHhhc--------CCCCeEEEcCCCCcChHH-hHhhhcCcE------------EEEEecCCC
Q 046900 119 DLNRIVVTAGATAANELLTFILA--------DPGDALLVPTPYYPGFDR-DLRWRTGIK------------IVPIHCDSS 177 (442)
Q Consensus 119 ~~~~i~~t~G~~~ai~~~~~~l~--------~~gd~Vl~~~p~y~~~~~-~~~~~~G~~------------v~~v~~~~~ 177 (442)
..+.+++++++++++..+++... ...+.|+..+-+|.+... .+.. .|.. +..+|.
T Consensus 91 ~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--- 166 (397)
T TIGR03246 91 FADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSV-GGQPKYSQGFAPLPGGIKHAPY--- 166 (397)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHh-cCCcccccCCCCCCCceEEeCC---
Confidence 24689999999999999988762 123567777777766533 2231 2321 112221
Q ss_pred CCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHH
Q 046900 178 NNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIA 256 (442)
Q Consensus 178 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~ 256 (442)
.|++.+++.+.+ ++++|++..++++.|... +.+.+++|.++|++||+++|.||+|..+...+..+ ...
T Consensus 167 ----~d~~~l~~~l~~------~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~-a~~ 235 (397)
T TIGR03246 167 ----NDLAAAKALISD------KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELY-AYM 235 (397)
T ss_pred ----CCHHHHHHHhcc------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccch-hhh
Confidence 278999988853 677777774455566554 78899999999999999999999998765544321 111
Q ss_pred HHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHHHhcCchhHHHHHHH
Q 046900 257 EILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLASMLSNKKFTENYIKT 334 (442)
Q Consensus 257 ~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 334 (442)
... ...-+.++||.+| .|+++||+++ ++.+.+.+.... ..+..+++++.++.+.++... ..+
T Consensus 236 ~~g---------v~pDi~t~~K~lg-gG~pigav~~-~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~-----~~~ 299 (397)
T TIGR03246 236 HYG---------VTPDILTSAKALG-GGFPIGAMLT-TTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVN-----TPE 299 (397)
T ss_pred hcC---------CCCCEEEeehhhh-CCcceeEEEE-cHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHh-----hcc
Confidence 111 1111348999998 8999999999 566766665321 224467788887777776321 134
Q ss_pred HHHHHHHHHHHHHHHHHhCC--Ce--eecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCE
Q 046900 335 NRERLQKRYQMIIEGLRSAG--IE--CLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGW 410 (442)
Q Consensus 335 ~~~~~~~~~~~l~~~L~~~g--~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~ 410 (442)
..+.++++.+++.+.|++.+ .. ......|.++.+.+.... ......++..|+++ ||.+.+. +.++
T Consensus 300 l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~----~~~~~~~~~~l~~~-Gv~~~~~------g~~~ 368 (397)
T TIGR03246 300 LLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAY----QGKAKQFVNAAAEE-GVIALIA------GPNV 368 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEEEEEEcCch----hhHHHHHHHHHHHC-CeEEeec------CCCE
Confidence 56777778888888887653 11 111223445555553211 01356788888777 9998762 2368
Q ss_pred EEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 411 FRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 411 iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
+|++++ .++++++++++++|.+++.+
T Consensus 369 lR~~p~~~~t~~~i~~~~~~l~~~l~~ 395 (397)
T TIGR03246 369 VRFAPSLVISDDDIDEGLARFERAIEQ 395 (397)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999654 34899999999999998875
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=182.83 Aligned_cols=281 Identities=15% Similarity=0.162 Sum_probs=184.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH----HhHhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD----RDLRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~~G~~v~~v 172 (442)
...|++++|++++ .+..+++++++.++..++.+++++||+|+++.+.|.... ..+. ..|++++.+
T Consensus 65 ~~~le~~lA~l~g----------~~~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~-~~G~~v~~v 133 (389)
T PRK05968 65 VRAFEEMLAKLEG----------AEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILK-RMGVEVDYV 133 (389)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHH-HcCceEEEe
Confidence 5789999999875 223445566678999998889999999999999998633 3455 379999888
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+.+ |++.+++.+ + ++|+|++++|+||++. ..++++|+++|+++|+++|+|++|+...+..
T Consensus 134 d~~-------d~~~l~~~i-~------~tklV~ie~pt~~~~~---~~dl~~i~~la~~~gi~vivD~a~a~~~~~~--- 193 (389)
T PRK05968 134 DGR-------DEEAVAKAL-P------GAKLLYLESPTSWVFE---LQDVAALAALAKRHGVVTMIDNSWASPVFQR--- 193 (389)
T ss_pred CCC-------CHHHHHHhc-c------cCCEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCcchhccC---
Confidence 632 678888876 2 6789999977777654 4679999999999999999999998644321
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHccc--c-CCCcHHHHHHHHHHhcCchhH
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSS--F-TLISSQTQYLLASMLSNKKFT 328 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~--~-~~~s~~~q~~~~~~l~~~~~~ 328 (442)
++ .. +..+++.|+||.++.+| ++.|++++ ++.+.+.++.... . ..+++..+..+...|+..
T Consensus 194 -p~-~~---------g~Divv~S~tK~l~g~~~~~gG~i~~-~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl--- 258 (389)
T PRK05968 194 -PI-TL---------GVDLVIHSASKYLGGHSDTVAGVVAG-SKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTL--- 258 (389)
T ss_pred -ch-hc---------CCcEEEeeccccccCCCCeEEEEEEE-CHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCcH---
Confidence 11 11 22377889999997655 68899887 4555554443221 1 345666666655555532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec-C-----------CceEEEEEecCCcccccChhhHHHHHHHHHHcCcE
Q 046900 329 ENYIKTNRERLQKRYQMIIEGLRSA-GIECLK-G-----------NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKL 395 (442)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~-----------~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi 395 (442)
....++-.++.+.+.+.|+++ +++... | ..|-.+.+++... .+..++++.|.. .++
T Consensus 259 ----~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~------~~~~~f~~~L~~-~~~ 327 (389)
T PRK05968 259 ----PLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREG------IDVRAFADALKL-FRL 327 (389)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCH------HHHHHHHHhCCc-cEE
Confidence 223333344566777888775 454332 2 1122444565531 135677777743 376
Q ss_pred EEeCCCCCC------------C---------CCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 396 NISPGSSCH------------C---------SEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 396 ~v~pg~~f~------------~---------~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.+.-|..+. . -.++.+|+|++- |+.+.+++-|.+++.+.
T Consensus 328 ~~s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGl---E~~~dl~~dl~~al~~~ 387 (389)
T PRK05968 328 GVSWGGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGL---EGTEALWADLEQALAAA 387 (389)
T ss_pred ecCCCCCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHHh
Confidence 666665543 0 114689999996 34666677777777643
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-21 Score=185.89 Aligned_cols=280 Identities=16% Similarity=0.192 Sum_probs=187.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh----cCCCCeEEEcCCCCcChHHhHhh--hcCcEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL----ADPGDALLVPTPYYPGFDRDLRW--RTGIKIV 170 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l----~~~gd~Vl~~~p~y~~~~~~~~~--~~G~~v~ 170 (442)
+.++|+.++++++ .++++|++|+|+++++.+++..+ .++||+|++....|+.+...+.. ..|++++
T Consensus 45 ~~~~r~~la~~~g--------~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~ 116 (364)
T PLN02651 45 VEKARAQVAALIG--------ADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVT 116 (364)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEE
Confidence 3456666666654 56889999999999988776554 47899999998888765443321 3699999
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
.++.++ ++.+|++.+++.+++ +++++++++++||||.+.+ +++|.++|+++|+++++|.+++...
T Consensus 117 ~v~~~~--~~~~d~~~l~~~i~~------~t~lv~v~~~~n~tG~~~~---l~~I~~~~~~~g~~~~vD~a~~~g~---- 181 (364)
T PLN02651 117 YLPVKS--DGLVDLDELAAAIRP------DTALVSVMAVNNEIGVIQP---VEEIGELCREKKVLFHTDAAQAVGK---- 181 (364)
T ss_pred EEccCC--CCcCCHHHHHHhcCC------CcEEEEEECCCCCceeccc---HHHHHHHHHHcCCEEEEEcchhhCC----
Confidence 998864 356899999999865 7889999999999999998 7788889999999999999998421
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH---------ccccCCCcHHHHHHHHHH
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR---------MSSFTLISSQTQYLLASM 321 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~---------~~~~~~~s~~~q~~~~~~ 321 (442)
....+..+ +--+++.|.+|.+|. ..+|++++.++... .+.. ....++.+.....++.+.
T Consensus 182 ~~~~~~~~---------~~D~~~~s~hK~~gp--~G~g~l~v~~~~~~-~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~a 249 (364)
T PLN02651 182 IPVDVDDL---------GVDLMSISGHKIYGP--KGVGALYVRRRPRV-RLEPLMSGGGQERGRRSGTENTPLVVGLGAA 249 (364)
T ss_pred cccCcccC---------CCCEEEechhhhCCC--CceEEEEEcCCCCC-CCCccccCCCccCCccCCCccHHHHHHHHHH
Confidence 12222222 233678899996553 34799888543221 1110 011233444444444444
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeecCC-----ceEEEEEecCCcccccChhhHHHHHHHHHHcCc
Q 046900 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRS-A-GIECLKGN-----AGLFCWMNLSPLLEEQTREGELALWDSMLHEVK 394 (442)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g 394 (442)
++ ++.+..+..+++.++.++++.+.|.+ . |+++..+. ....+.+.++.. +..++...|. +
T Consensus 250 l~---~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~L~-~-- 316 (364)
T PLN02651 250 CE---LAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYV-------EGESLLMGLK-E-- 316 (364)
T ss_pred HH---HHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCC-------CHHHHHHHhC-C--
Confidence 44 33333456677788888888888875 3 77777641 122444455432 2557777773 3
Q ss_pred EEEeCCCCCCCC-----------------CCCEEEEEeecC-CHHHHH
Q 046900 395 LNISPGSSCHCS-----------------EPGWFRVCFANM-SEQTLE 424 (442)
Q Consensus 395 i~v~pg~~f~~~-----------------~~~~iRls~~~~-~~e~i~ 424 (442)
|.+..|+.|... ..+.+|+|++.- |++|++
T Consensus 317 i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 317 VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 999998876432 136899999832 667653
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-20 Score=179.03 Aligned_cols=215 Identities=14% Similarity=0.130 Sum_probs=154.9
Q ss_pred ccCCC--cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhH----hh
Q 046900 90 LFQDY--HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDL----RW 163 (442)
Q Consensus 90 ~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~ 163 (442)
.|+.. .....|+++||++.+ .+++++++|+++|+..++.+++++||+|++++|.|.++...+ .
T Consensus 54 ~Y~r~~npt~~~Le~~iA~le~----------~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~- 122 (394)
T PRK09028 54 FYGRRGTPTHFAFQAAIVELEG----------GAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILK- 122 (394)
T ss_pred eecCCCCchHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhh-
Confidence 35543 245799999998853 357899999999999999999999999999999998876533 3
Q ss_pred hcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCC
Q 046900 164 RTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYS 243 (442)
Q Consensus 164 ~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~ 243 (442)
..|+++..++.+ +.+.+++.+++ ++|+|++++|+||||.+. ++++|+++|+++|+++|+|++|+
T Consensus 123 ~~Gi~v~~v~~~-------~~e~l~~~l~~------~TklV~lespsNPtg~v~---dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 123 GFGIETTYYDPM-------IGEGIRELIRP------NTKVLFLESPGSITMEVQ---DVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred hcceEEEEECCC-------CHHHHHHhcCc------CceEEEEECCCCCCCcHH---HHHHHHHHHHHcCCEEEEECCcc
Confidence 378888776532 45778887754 799999999999998874 48999999999999999999998
Q ss_pred cCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccC-CCCCceeEEEeecCHHHHHHHHHccc-c-CCCcHHHHHHHHH
Q 046900 244 GSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDL-GLPGFRVGTIYSYNDKVVTTARRMSS-F-TLISSQTQYLLAS 320 (442)
Q Consensus 244 ~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~G~RiG~i~~~~~~~~~~~~~~~~-~-~~~s~~~q~~~~~ 320 (442)
.... ..++ .+ +--+++.|.+|.+ |..++-.|+++. ++.+.+.+..... . ..+++...+.+..
T Consensus 187 ~p~~----~~Pl-~~---------GaDivv~S~tK~l~Gh~d~~~G~~~~-~~~~~~~l~~~~~~~G~~~~p~~a~l~~r 251 (394)
T PRK09028 187 SPIN----SRPF-EM---------GVDISIQAATKYIVGHSDVMLGTATA-NEKHWDQLREHSYLMGQCTSPDDVYLAMR 251 (394)
T ss_pred cccc----CCcc-cc---------CceEEEEeCCeEecCCCCEEEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 5221 1121 22 3348899999998 555577887766 4544444432221 2 3456666666555
Q ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 321 MLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
-++. +.-+.++..++...+.+.|+++
T Consensus 252 gl~T-------L~lR~~~~~~na~~la~~L~~~ 277 (394)
T PRK09028 252 GLRT-------LGVRLAQHEKNALKVANWLATR 277 (394)
T ss_pred ccCc-------HHHHHHHHHHHHHHHHHHHhcC
Confidence 5554 3334455567777888888876
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-19 Score=182.74 Aligned_cols=315 Identities=14% Similarity=0.134 Sum_probs=201.7
Q ss_pred cccc---CCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHH--HH-hhcCCCC----eEEEcCCCCcCh
Q 046900 88 NALF---QDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELL--TF-ILADPGD----ALLVPTPYYPGF 157 (442)
Q Consensus 88 ~~~Y---~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~--~~-~l~~~gd----~Vl~~~p~y~~~ 157 (442)
.+.| ...+|..+++.++.+++.+.+| ++...+..++|+++.+..+ ++ .+.++|| +|+++.|.|+.+
T Consensus 99 ~tpYq~e~~sqG~lel~~~~~~~la~l~G----~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~ 174 (481)
T PRK04366 99 LHPLQPEETVQGALELMYELQEWLKEITG----MDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTN 174 (481)
T ss_pred CCCCCChhhhhHHHHHHHHHHHHHHHHhC----CCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhH
Confidence 3556 3457899999999999999877 4445666667776666533 33 3456776 999999999999
Q ss_pred HHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEE
Q 046900 158 DRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLV 237 (442)
Q Consensus 158 ~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi 237 (442)
...+.. .|++++.++++. ++.+|++.|++.+.+ ++++|++++|| |||.+ .+++++|+++|++++++++
T Consensus 175 ~~~~~~-~G~~vv~v~~~~--~~~~D~e~L~~~i~~------~t~~V~v~~Pn-~tG~~--~~dl~eI~~~a~~~gal~i 242 (481)
T PRK04366 175 PASAAM-AGFKVVEIPSNE--DGLVDLEALKAAVGE------DTAALMLTNPN-TLGLF--ERNILEIAEIVHEAGGLLY 242 (481)
T ss_pred HHHHHH-cCCEEEEeecCC--CCCcCHHHHHhhccc------CCeEEEEeCCC-Ccccc--chHHHHHHHHHHHcCCEEE
Confidence 998885 999999999864 467999999998865 78899999998 99964 3469999999999999999
Q ss_pred EeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC----CceeEEEeecCHHHHHHHH-Hc-----ccc
Q 046900 238 SDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP----GFRVGTIYSYNDKVVTTAR-RM-----SSF 307 (442)
Q Consensus 238 ~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~----G~RiG~i~~~~~~~~~~~~-~~-----~~~ 307 (442)
+|.++..... +. .+...+ +--++++|.+|.||.| |-.+|++.+.+ .+.+.+. .. ..+
T Consensus 243 VD~a~~~~~~-g~--~~~~~~---------GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~-~~~~~lp~~~v~~~g~~~ 309 (481)
T PRK04366 243 YDGANLNAIL-GK--ARPGDM---------GFDVVHLNLHKTFSTPHGGGGPGSGPVGVKE-ELAPFLPVPVVEKDGDRY 309 (481)
T ss_pred EEecChhhhc-cc--CCcccc---------CCCEEEEechhhcCCCCCCCCCCeeeeeehh-hhHhhCCCCeeeccCCce
Confidence 9999853212 11 111122 3347889999998644 45578888743 3333321 00 000
Q ss_pred ---------------CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceE-EEEEecC
Q 046900 308 ---------------TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGL-FCWMNLS 371 (442)
Q Consensus 308 ---------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~-~~~~~~~ 371 (442)
+..+.....++..++...+ .+-+++..++..++.+++.+.|.+. +++..+...+ -+.++++
T Consensus 310 ~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G--~~Gl~~~a~~~~~~a~~l~~~L~~~-~~~~~~~~~~~~~~~~~~ 386 (481)
T PRK04366 310 RLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLG--AEGLREVSEDAVLNANYLKARLKDI-YDLPYDRPCMHEFVLSGK 386 (481)
T ss_pred eecccccccCCCcccccCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHhh-CcccCCCCeeEEEEEECc
Confidence 0001111122222222111 2334555566677788888888875 2222111111 1223332
Q ss_pred CcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHHH
Q 046900 372 PLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 372 ~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~~ 438 (442)
.. ...+ .+..++.+.|.++ ||.+. +..|.....+.+|+++.. -++++++++++.|+++.++..
T Consensus 387 ~~-~~~g-~~~~~v~~~L~~~-Gi~~~-~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~ 450 (481)
T PRK04366 387 KL-KETG-VRTLDIAKRLLDY-GFHPP-TIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAK 450 (481)
T ss_pred cc-cccC-CCHHHHHHHHHHC-CccCC-ccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11 0000 0367788888776 99865 233322225679999862 289999999999999877654
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-20 Score=179.49 Aligned_cols=210 Identities=15% Similarity=0.146 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH----HhHhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD----RDLRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~~G~~v~~v 172 (442)
...|++++|++.+ .+ +.+++++| +.++.+++. ++++||+|+++.|.|+... ..++ ..|++++.+
T Consensus 56 ~~~le~~lA~l~g--------~~-~~v~~~sG-~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~-~~G~~v~~v 123 (390)
T PRK08064 56 REALEDIIAELEG--------GT-KGFAFASG-MAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLS-RFGIEHTFV 123 (390)
T ss_pred HHHHHHHHHHHhC--------CC-CeEEECCH-HHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHH-HcCCEEEEE
Confidence 5788888888875 23 45666555 668888776 6789999999999998533 3344 389999998
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+.+ |++.+++.+++ ++++|++++|+||||.+.+ +++|.++|+++++++|+|++|+.....
T Consensus 124 ~~~-------d~~~l~~~l~~------~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~---- 183 (390)
T PRK08064 124 DMT-------NLEEVAQNIKP------NTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQ---- 183 (390)
T ss_pred CCC-------CHHHHHHhcCC------CceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCccccc----
Confidence 753 67888888764 7899999999999999987 677788888999999999999864321
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHH
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENY 331 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~ 331 (442)
.++ .+ +..+++.|+||.++ .+|...|++++.++.+.+.++.....++.+...+.+.. .+.... .
T Consensus 184 ~~~-~~---------g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l-~~~gl~----t 248 (390)
T PRK08064 184 KPL-DL---------GADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL-VLRGLK----T 248 (390)
T ss_pred Cch-hh---------CCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHcccC----c
Confidence 111 22 33478899999985 34466788877666777777665554333322222222 223222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC
Q 046900 332 IKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 332 ~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
+....++..++...+.+.|+++
T Consensus 249 l~~R~~~~~~~a~~la~~L~~~ 270 (390)
T PRK08064 249 LHVRLEHSSETANKIALYLQEH 270 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555567777778888765
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-20 Score=179.13 Aligned_cols=292 Identities=17% Similarity=0.240 Sum_probs=185.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD 175 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~ 175 (442)
..++++++++++.+.++ .+++++++|+++++.+++.++ +++||.|+++.|+|+.+...+.. .|++++.++++
T Consensus 29 ~~~~~~~~e~~la~~~g------~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~-~G~~~v~~d~d 101 (375)
T PRK11706 29 DGGFTRRCQQWLEQRFG------SAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVL-RGAKIVFVDIR 101 (375)
T ss_pred CCHHHHHHHHHHHHHhC------CCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHH-cCCEEEEEecC
Confidence 34677888887776644 578999999999999887765 78999999999999999998885 99999999988
Q ss_pred CCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC-CCCCCccc
Q 046900 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA-FSSSEFVS 254 (442)
Q Consensus 176 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~-~~~~~~~s 254 (442)
++ +|.+|++++++.+++ ++++|+++ |++|...+ +++|+++|+++|++||+|++|+.+. +++.+..+
T Consensus 102 ~~-~~~~d~~~le~~i~~------~tk~i~~~---~~~G~~~~---~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~ 168 (375)
T PRK11706 102 PD-TMNIDETLIEAAITP------KTRAIVPV---HYAGVACE---MDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGT 168 (375)
T ss_pred CC-cCCcCHHHHHHhcCC------CCeEEEEe---CCCCCccC---HHHHHHHHHHcCCEEEEECccccccccCCeeeec
Confidence 64 588999999998864 78888876 46898766 6788888989999999999998654 33321111
Q ss_pred HHHHHhhhcCCCCCcEEEEecCc--ccCCCCCceeEEEeecCHHHHHHHHHcccc-------------------CCCcHH
Q 046900 255 IAEILEARQYKDSERVHIVYSLS--KDLGLPGFRVGTIYSYNDKVVTTARRMSSF-------------------TLISSQ 313 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~S--K~~g~~G~RiG~i~~~~~~~~~~~~~~~~~-------------------~~~s~~ 313 (442)
+ . .+.+.||+ |.++ +|.+.++++. ++.+.+.++..... .+.+..
T Consensus 169 ---~---------~-~~~~~Sf~~~K~l~-~g~gG~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 233 (375)
T PRK11706 169 ---I---------G-HIGCFSFHETKNYT-AGEGGALLIN-DPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYL 233 (375)
T ss_pred ---C---------c-CEEEEeCCCCcccc-ccCCeEEEEC-CHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccC
Confidence 1 1 12334444 9997 6888777765 56666554432211 112221
Q ss_pred HHHHHHHH-hcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC---C-Ceee-cCC----ceEEEEEecCCcccccChhhHH
Q 046900 314 TQYLLASM-LSNKKFTENYIKTNRERLQKRYQMIIEGLRSA---G-IECL-KGN----AGLFCWMNLSPLLEEQTREGEL 383 (442)
Q Consensus 314 ~q~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g-~~~~-~~~----~g~~~~~~~~~~~~~~~~~~~~ 383 (442)
.+...+++ +.... .+++..++-+++.+.+.+.|.+. + +.+. .+. ...++|+.++... +..
T Consensus 234 ~~~~~aa~~~~ql~----~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~r~ 303 (375)
T PRK11706 234 PSELQAAYLWAQLE----AADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDLE------DRS 303 (375)
T ss_pred cCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCcC------CHH
Confidence 12121221 11111 13333334444445555666543 1 3221 121 2335566665421 356
Q ss_pred HHHHHHHHcCcEEEeCCC----C---C---C---CCCC-------CEEEEEee-cCCHHHHHHHHHHHHHHH
Q 046900 384 ALWDSMLHEVKLNISPGS----S---C---H---CSEP-------GWFRVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 384 ~l~~~l~~~~gi~v~pg~----~---f---~---~~~~-------~~iRls~~-~~~~e~i~~~l~~l~~~l 434 (442)
++.+.|.++ ||.+.... . | + ...+ ..+-|-+. .+++++++..++.|++++
T Consensus 304 ~l~~~L~~~-gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 304 ALINFLKEA-GIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred HHHHHHHHC-CCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 788888776 99875321 0 0 0 0000 12333332 458899999999988764
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-20 Score=181.59 Aligned_cols=164 Identities=21% Similarity=0.282 Sum_probs=130.1
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH----HhHhhh
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD----RDLRWR 164 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~ 164 (442)
.+|+.+ -..+|++.+|++++ .+..++++++++++..++.+++++||+|+++.+.|+... ..+. .
T Consensus 52 sr~~~p-~~~~le~~lA~l~g----------~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~-~ 119 (418)
T TIGR01326 52 SRLMNP-TTDVLEQRIAALEG----------GVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLK-R 119 (418)
T ss_pred ECCCCh-hHHHHHHHHHHHhC----------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHH-H
Confidence 344443 35788888888865 356788999999999999999999999999999986543 3345 3
Q ss_pred cCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc
Q 046900 165 TGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG 244 (442)
Q Consensus 165 ~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~ 244 (442)
.|++++.++.+ |++.+++.+++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.
T Consensus 120 ~G~~v~~v~~~-------d~~~l~~~l~~------~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~ 183 (418)
T TIGR01326 120 LGIEVRFVDPD-------DPEEFEKAIDE------NTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFAT 183 (418)
T ss_pred cCcEEEEECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCch
Confidence 89999988742 78899988865 7889999999999999987 77888889999999999999974
Q ss_pred CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecC
Q 046900 245 SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYN 294 (442)
Q Consensus 245 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~ 294 (442)
..+ ..+ + . .+..+++.|+||.+|.+|+|+||+++++
T Consensus 184 ~~~----~~~---l-~------~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 184 PYL----CRP---I-D------HGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred hhc----CCc---h-h------cCCeEEEECccccccCCccceEEEEEec
Confidence 211 111 1 1 2456899999999998999999999854
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=176.48 Aligned_cols=267 Identities=16% Similarity=0.208 Sum_probs=176.8
Q ss_pred CcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----HhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHh
Q 046900 121 NRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD----LRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAES 196 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~ 196 (442)
++++++++++.++..++. ++++||+|+++.+.|..+... +. ..|++++.+++. |++.+++++++
T Consensus 63 ~~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~-~~G~~v~~vd~~-------d~~~le~~i~~--- 130 (378)
T TIGR01329 63 DRAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVP-RSGVVVVHVDTT-------DLDKVKAALGP--- 130 (378)
T ss_pred CcEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHH-HcCcEEEEeCCC-------CHHHHHHhcCc---
Confidence 567777777889988776 779999999999999876543 33 379999988752 68899988864
Q ss_pred cCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecC
Q 046900 197 KDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSL 276 (442)
Q Consensus 197 ~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~ 276 (442)
++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|+... ...++ .+ +-.+++.|+
T Consensus 131 ---~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~----~~~~l-~~---------g~Di~v~S~ 190 (378)
T TIGR01329 131 ---KTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSPL----LCNPL-EL---------GADIVYHSA 190 (378)
T ss_pred ---CceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccc----cCChh-hc---------CCcEEEEec
Confidence 8899999999999999987 8888999999999999999986322 11222 22 223788999
Q ss_pred cccCCC-CCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 277 SKDLGL-PGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 277 SK~~g~-~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
+|.++- .+++.|+++++++.+.+.++..... ...++...+.+..-++. +..+.++-.++...+.+.|+++
T Consensus 191 tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~t-------l~~R~e~~~~na~~la~~L~~~ 263 (378)
T TIGR01329 191 TKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKT-------LAIRIEKQQENARAIAMFLSTH 263 (378)
T ss_pred ceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCC-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 998853 3578999988666665555543332 23344443333333332 2333444455556666666654
Q ss_pred -CC-eeec----------------CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC----------
Q 046900 354 -GI-ECLK----------------GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC---------- 405 (442)
Q Consensus 354 -g~-~~~~----------------~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~---------- 405 (442)
.+ ++.- ...|-.+.+++.. .....++++.| +..++.++-|.....
T Consensus 264 ~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~------~~~~~~~~~~L-~~~~i~~s~G~~~sl~~~p~~~~~~ 336 (378)
T TIGR01329 264 PRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGS------VALSKRLVEAT-KLFSITVSFGSVNSLISMPCFMSHA 336 (378)
T ss_pred CCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECC------HHHHHHHHHhC-cCcccccCCCCCCceeeCCCccccc
Confidence 11 1110 1122345555522 12356777777 566777777765321
Q ss_pred -----------CCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 406 -----------SEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 406 -----------~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
-.++.||||++- |+.+.+++.|.+++++
T Consensus 337 ~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~~ 375 (378)
T TIGR01329 337 SIPAEVREERGLPEDLVRLSVGI---EDVDDLISDLDIAFVT 375 (378)
T ss_pred cCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHh
Confidence 124689999996 4567778888877764
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-20 Score=180.42 Aligned_cols=210 Identities=20% Similarity=0.225 Sum_probs=153.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----HhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD----LRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~~G~~v~~v 172 (442)
...|++.+|++.+ ....+++++++.|+.+++.+++++||+|+++.++|.+.... +. ..|+++..+
T Consensus 63 v~~lE~~la~leg----------~~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~-~~Gi~v~~v 131 (432)
T PRK06702 63 LAAFEQKLAELEG----------GVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLR-KLGIDVTFF 131 (432)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHH-HCCCEEEEE
Confidence 5677888888764 34578999999999999999999999999999999865554 45 489999888
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
.. .+|++.+++++++ ++|+|++.+|+||++.+.+ +++|+++|+++|+++|+|++|+. +..
T Consensus 132 d~------~~d~~~l~~~I~~------~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~t-----P~~ 191 (432)
T PRK06702 132 NP------NLTADEIVALAND------KTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLAT-----PYL 191 (432)
T ss_pred CC------CCCHHHHHHhCCc------CCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCc-----hhh
Confidence 53 3688999999876 8999999999999999999 88889999999999999999862 111
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcc-----cCCCCCcee-----EEEeecCHHHHH-----------------------
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSK-----DLGLPGFRV-----GTIYSYNDKVVT----------------------- 299 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK-----~~g~~G~Ri-----G~i~~~~~~~~~----------------------- 299 (442)
.....+ +-.|+++|+|| ..+++|+++ +|...++..+..
T Consensus 192 ~~pl~~---------GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (432)
T PRK06702 192 CQAFEH---------GANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKA 262 (432)
T ss_pred CChhhc---------CCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHH
Confidence 222222 33388999999 777888887 565543222211
Q ss_pred HHHHcccc-CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 300 TARRMSSF-TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 300 ~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
.......+ ..+++...+.+...|+..+ .+.++-.++...+.+.|+++
T Consensus 263 ~~~~~~~~g~~~sp~~a~l~~rgL~Tl~-------lR~~r~~~Na~~la~~L~~~ 310 (432)
T PRK06702 263 RVQLLRDYGNCMSPFNAYISNIGLETLH-------LRMERHSENALAVAKWLADH 310 (432)
T ss_pred HHHHHHHccCCCCHHHHHHHHhccCcHH-------HHHHHHHHHHHHHHHHHHhC
Confidence 11112222 3567777777777776532 22333357778888888875
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=178.77 Aligned_cols=156 Identities=21% Similarity=0.308 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH----HhHhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD----RDLRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~~G~~v~~v 172 (442)
...|.+.+|++.+ .+..++++|+++++..++..++++||+|+++.+.|+... ..++ ..|++++.+
T Consensus 66 ~~~Le~~lA~leg----------~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~-~~Gv~v~~v 134 (431)
T PRK08248 66 TDVFEKRIAALEG----------GIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLP-KLGITVKFV 134 (431)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHH-hCCEEEEEE
Confidence 4678888888764 457789999999999999999999999999999997643 3344 489999998
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+. .|++.+++++++ ++++|++++|+||||.+++ +++|+++|+++++++|+|++|+.. ...
T Consensus 135 d~-------~d~e~l~~ai~~------~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~----~~~ 194 (431)
T PRK08248 135 DP-------SDPENFEAAITD------KTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASP----YLL 194 (431)
T ss_pred CC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCcc----ccC
Confidence 75 278899988864 7899999999999999999 668888899999999999998731 111
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeec
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSY 293 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~ 293 (442)
.++ .+ +..+++.|++|.+|.+|.++|++++.
T Consensus 195 ~pl-~~---------gaDivv~S~tK~lgg~g~~~Gg~v~~ 225 (431)
T PRK08248 195 RPI-EH---------GADIVVHSATKFIGGHGTSIGGVIVD 225 (431)
T ss_pred Chh-Hc---------CCCEEEEcCccccCCCCCceEEEEEe
Confidence 222 22 44588899999999999999998773
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-19 Score=178.10 Aligned_cols=311 Identities=12% Similarity=0.053 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcC--------c-
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTG--------I- 167 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G--------~- 167 (442)
+.+..+|+.+.+... .-..+.+++++++++|++.+++... .....|+...-+|.+....+....| .
T Consensus 76 ~~~~~la~~l~~~~p---~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~ 152 (420)
T TIGR00700 76 EGYVALAEKLNRIAP---GSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFG 152 (420)
T ss_pred hHHHHHHHHHHHhCC---CCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCC
Confidence 334456666554321 0112589999999999998876542 2335688788888775433221111 1
Q ss_pred ----EEEEEecCCCC---------CCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHH-HHHHHHHHHhcC
Q 046900 168 ----KIVPIHCDSSN---------NFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSV-LEELLDFATRKN 233 (442)
Q Consensus 168 ----~v~~v~~~~~~---------~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~-l~~l~~~~~~~~ 233 (442)
.+..+|..... .+.-+++.+++.+... ....++.+|++..-..-+|.+++.++ +++|.++|++|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g 231 (420)
T TIGR00700 153 PFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVID-VGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHG 231 (420)
T ss_pred CCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhh-cCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 11222221000 0000144556555311 11235666665544667888775555 999999999999
Q ss_pred cEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCc
Q 046900 234 IHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLIS 311 (442)
Q Consensus 234 ~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s 311 (442)
+++|+||+|..+.+.+. +.+.... +.+..+.+|||.++ +|+|+||+++ ++.+.+.+.. ....+..+
T Consensus 232 illI~DEV~tg~gr~g~-~~a~~~~---------~~~pDi~~lsK~l~-~G~pig~v~~-~~~i~~~~~~~~~~~T~~~~ 299 (420)
T TIGR00700 232 IVFIADEVQTGFARTGA-MFACEHE---------GPEPDLITTAKSLA-DGLPLSGVTG-RAEIMDAPAPGGLGGTYAGN 299 (420)
T ss_pred CEEEEEecccCCcccch-hHHHhhc---------CCCCCEEEeecccc-CCcceEEEEe-cHHHHhhcCCCCcCCCCCcC
Confidence 99999999998876553 2222211 12222456999998 9999999999 5666665532 22335678
Q ss_pred HHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCceEEEEEecCCccc-ccChhhHHHHH
Q 046900 312 SQTQYLLASMLS---NKKFTENYIKTNRERLQKRYQMIIEGLRSAG-IECLKGNAGLFCWMNLSPLLE-EQTREGELALW 386 (442)
Q Consensus 312 ~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~l~ 386 (442)
+++|.++.+.++ ..++ .+++.+..+.++++.+.+.+ +++ +....+. |+++|+++..... .........+.
T Consensus 300 pl~~aaa~a~l~~l~~~~~-~~~~~~~g~~l~~~L~~l~~---~~~~~~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~ 374 (420)
T TIGR00700 300 PLACAAALAVLAIIESEGL-IERARQIGRLVTDRLTTLKA---VDPRIGDVRGL-GAMIAVELVDPGTTEPDAGLAERIA 374 (420)
T ss_pred HHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHh---hCCCEEEeecc-ceEEEEEEecCCCCCccHHHHHHHH
Confidence 889988866553 3332 33444444444443333333 232 3334444 6788887742100 01111245566
Q ss_pred HHHHHcCcEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHHHH
Q 046900 387 DSMLHEVKLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 387 ~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~ 435 (442)
..++++ ||.+.|++.|+ +++||+++. ++++++++++++|.+++.
T Consensus 375 ~~~~~~-Gv~i~p~~~f~----~~lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 375 TAAHAA-GLLLLTCGMFG----NIIRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred HHHHHC-CeEEeccCCCC----CEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 666565 99999987773 589999863 589999999999999874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-19 Score=175.90 Aligned_cols=361 Identities=12% Similarity=0.108 Sum_probs=208.4
Q ss_pred CCCCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|..+.....+||+..+. ..+ .++.+.+.+.+..... ..........+.+..+|+.+.+...
T Consensus 46 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~------------~~~~~~~~~~~~~~~la~~L~~~~p-- 111 (451)
T PRK06918 46 ALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQY------------IHTGFNVMMYEPYIELAEKLAALAP-- 111 (451)
T ss_pred cEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhc------------cCccccccccHHHHHHHHHHHHhCC--
Confidence 444445567788886553 223 2355555555443211 0000111123555667776665421
Q ss_pred CccC-CCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCc-------------EEEEEecCCC--
Q 046900 116 AKFD-LNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGI-------------KIVPIHCDSS-- 177 (442)
Q Consensus 116 ~~~~-~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~-------------~v~~v~~~~~-- 177 (442)
.. .+.+++++++++|++.+++... .....|+....+|.+....+....|- .+..+|....
T Consensus 112 --~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (451)
T PRK06918 112 --GSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYR 189 (451)
T ss_pred --CCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCcccc
Confidence 11 1589999999999999887542 22356888888887765433211121 1222221100
Q ss_pred CCCcCC--------HHHHHHHHHHHHhcCCceeEEEEeCCCCC-CCcCCCH-HHHHHHHHHHHhcCcEEEEeccCCcCCC
Q 046900 178 NNFQIT--------PQALEAAYKEAESKDMRVRGVLITNPSNP-LGATIQR-SVLEELLDFATRKNIHLVSDEIYSGSAF 247 (442)
Q Consensus 178 ~~~~~d--------~~~l~~~l~~~~~~~~~~~~v~l~~P~NP-tG~~~~~-~~l~~l~~~~~~~~~~vi~De~y~~~~~ 247 (442)
....+. .+.+++.+.... ...++ +.++..|-.. .|.+++. +.+++|.++|++||+++|+||+|..+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i-Aavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr 267 (451)
T PRK06918 190 RPEGLTEEQYDDFMIEEFKNFFISEV-APETI-AAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFAR 267 (451)
T ss_pred ccccCchHHHHHHHHHHHHHHHHhhc-CCCce-EEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCc
Confidence 000111 122333332110 11234 4566667544 4665554 4599999999999999999999999877
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhc--
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLS-- 323 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~-- 323 (442)
.+. +.+...+... ++ +.||||.++ +|+|+||+++ ++.+.+.+.. ....+..++++|.++.+.++
T Consensus 268 ~g~-~~a~~~~~v~-----pD----i~t~sK~l~-~G~pig~v~~-~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i 335 (451)
T PRK06918 268 TGK-YFAIEHFDVV-----PD----LITVSKSLG-AGVPISGVIG-RKEIMDESAPGELGGTYAGSPLGCAAALAVLDII 335 (451)
T ss_pred cCc-eehhHhcCCC-----CC----EEeeehhhc-CCCccEEEEE-cHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHH
Confidence 664 3333333211 22 458999998 9999999999 4566655542 22235678888888666554
Q ss_pred -CchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCceEEEEEecCCcc-cccChhhHHHHHHHHHHcCcEEEeCC
Q 046900 324 -NKKFTENYIKTNRERLQKRYQMIIEGLRSAG-IECLKGNAGLFCWMNLSPLL-EEQTREGELALWDSMLHEVKLNISPG 400 (442)
Q Consensus 324 -~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~gi~v~pg 400 (442)
++. +.++++.+.+.+.++.+.+.+ +++ +....+.|+++.|....+.. ..........+...++++ ||.+.|+
T Consensus 336 ~~~~-~~~~~~~~g~~l~~~l~~l~~---~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-Gvlv~~~ 410 (451)
T PRK06918 336 EKEN-LNDRAIELGKVVMNRFEEMKN---KYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKR-GLLLLSA 410 (451)
T ss_pred HHCC-HHHHHHHHHHHHHHHHHHHHh---hCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHC-CeEEeec
Confidence 333 244455555555544444433 222 23345677777776542210 001112345666676666 9999998
Q ss_pred CCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHHHh
Q 046900 401 SSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 401 ~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
..|+ +++|++++. ++++++++++++|.+++.+...
T Consensus 411 ~~~~----~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~~ 446 (451)
T PRK06918 411 GTYG----NVIRVLMPLVITDEQLEEGLTIIEESLQACYE 446 (451)
T ss_pred CCCC----CEEEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 6663 589999873 6899999999999999987543
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=178.25 Aligned_cols=166 Identities=20% Similarity=0.295 Sum_probs=131.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS 176 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~ 176 (442)
+.++++.+|++++ . .+-+++++|+++++..++.+++++||.|+++.|+|..+...+.. .|++++.++.+.
T Consensus 61 i~~~~~~~A~~~g--------a-~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~-~g~~~~~v~~~~ 130 (294)
T cd00615 61 IKEAQELAARAFG--------A-KHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVL-SGAVPVYLKPER 130 (294)
T ss_pred HHHHHHHHHHHhC--------C-CCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHH-CCCEEEEecCcc
Confidence 6788899999875 1 23455699999999999999999999999999999999888885 899999988764
Q ss_pred CCCC----cCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc-CCCCCCC
Q 046900 177 SNNF----QITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG-SAFSSSE 251 (442)
Q Consensus 177 ~~~~----~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~-~~~~~~~ 251 (442)
+.+| .+|++.+++.+++ ..+++++++++| ||+|.+++ +++|+++|+++++++|+||+|+. +.|.+..
T Consensus 131 ~~~~~~~~~i~~~~l~~~l~~----~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~~~ 202 (294)
T cd00615 131 NPYYGIAGGIPPETFKKALIE----HPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHPIL 202 (294)
T ss_pred CcccCcCCCCCHHHHHHHHHh----CCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCccc
Confidence 4433 6899999999875 236889999999 79999998 78899999999999999999974 3333321
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEe
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIY 291 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~ 291 (442)
..+... .+..+++.|++|++ +|++.|+++
T Consensus 203 ~~~~~~---------~~~div~~S~hK~l--~g~~~~~~l 231 (294)
T cd00615 203 PSSAAM---------AGADIVVQSTHKTL--PALTQGSMI 231 (294)
T ss_pred Ccchhh---------cCCcEEEEchhccc--chHhHHHHH
Confidence 112111 25668899999976 778765544
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-19 Score=175.37 Aligned_cols=214 Identities=18% Similarity=0.236 Sum_probs=147.3
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH----hHhhhc
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR----DLRWRT 165 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~~ 165 (442)
+|+++ -...|++.+|++.+ . ...+++.+| +.++..++ .++++||+|+++.|.|+.... .+. ..
T Consensus 46 r~~~p-~~~~Le~~lA~l~g--------~-~~~~~~~sG-~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~-~~ 112 (377)
T PRK07671 46 RTGNP-TRAALEELIAVLEG--------G-HAGFAFGSG-MAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLN-RF 112 (377)
T ss_pred CCCCh-HHHHHHHHHHHHhC--------C-CceEEeCCH-HHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHh-cC
Confidence 34443 35788888888875 1 234665555 56777765 577899999999999985433 233 37
Q ss_pred CcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcC
Q 046900 166 GIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGS 245 (442)
Q Consensus 166 G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~ 245 (442)
|++++.++. .|++.+++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+..
T Consensus 113 G~~v~~v~~-------~d~~~l~~ai~~------~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~ 176 (377)
T PRK07671 113 GIEHTFVDT-------SNLEEVEEAIRP------NTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTP 176 (377)
T ss_pred CeEEEEECC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCcc
Confidence 999888863 378999998864 7899999999999999877 777888888999999999999753
Q ss_pred CCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHh
Q 046900 246 AFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASML 322 (442)
Q Consensus 246 ~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l 322 (442)
.+. . ++ .+ +..+++.|+||.+|-++ .-.|++++.++.+.+.+...... ...++...+.+..-+
T Consensus 177 ~~~-~---p~-~~---------g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l 242 (377)
T PRK07671 177 YWQ-S---PI-SL---------GADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGL 242 (377)
T ss_pred ccC-C---hh-hh---------CCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCc
Confidence 332 1 11 11 33488999999997443 34677777666676666554444 334454444333322
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 323 SNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
+. +..+.++..++...+.+.|++.
T Consensus 243 ~t-------l~~R~~~~~~na~~la~~L~~~ 266 (377)
T PRK07671 243 KT-------LGIRMEEHETNSRAIAEFLNNH 266 (377)
T ss_pred Ch-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 22 3445556667888888888875
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=176.92 Aligned_cols=157 Identities=25% Similarity=0.262 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---hcCcEEEEEe
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---RTGIKIVPIH 173 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~~G~~v~~v~ 173 (442)
...|++++|++.+ .+..++++++++++..++.+++++||+|+++.+.|......+.. ..|+++..++
T Consensus 60 ~~~Le~~lA~l~g----------~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d 129 (425)
T PRK06084 60 NDVLEQRVAALEG----------GVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAA 129 (425)
T ss_pred HHHHHHHHHHHhC----------CCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEEC
Confidence 4688888888864 34566788888999999999999999999999999865544431 1466666554
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
. .|++.+++++++ ++++|++++|+||||.+++ +++|+++|++++++||+|++|+.... ..
T Consensus 130 ~-------~d~e~le~ai~~------~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~----~~ 189 (425)
T PRK06084 130 H-------DDIAALEALIDE------RTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVL----CR 189 (425)
T ss_pred C-------CCHHHHHHHhcc------CCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc----CC
Confidence 2 378999999875 7899999999999999998 78888899999999999999984321 11
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeec
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSY 293 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~ 293 (442)
+ ..+ +..+++.|++|.++.+|.++|.+++.
T Consensus 190 p-~~~---------gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 190 P-FEH---------GADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred h-hhc---------CCCEEEECchhcccccccceeEEEEe
Confidence 1 122 23388999999998899999987774
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-19 Score=174.85 Aligned_cols=313 Identities=11% Similarity=0.122 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCc--------
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGI-------- 167 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~-------- 167 (442)
.+....+|+.+.+... ....+.+++++++++|++.+++... ....+|+...-+|.+....+....|.
T Consensus 82 ~~~~~~la~~l~~~~p---~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~ 158 (421)
T PRK09792 82 YESYVTLAEKINALAP---VSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGF 158 (421)
T ss_pred CHHHHHHHHHHHHhCC---CCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCC
Confidence 3444566666654321 0112579999999999998877652 22357888888887754322111121
Q ss_pred -----EEEEEecCCCCCCcC----CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEE
Q 046900 168 -----KIVPIHCDSSNNFQI----TPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLV 237 (442)
Q Consensus 168 -----~v~~v~~~~~~~~~~----d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi 237 (442)
.++.+|...... .+ +++.+++.+++.. ...++.+|++...++|+|..+ +.+.+++|.++|++|++++|
T Consensus 159 ~~~~~~~~~v~~p~~~~-~~~~~~~~~~l~~~~~~~~-~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI 236 (421)
T PRK09792 159 GPFPGSVYHVPYPSDLH-GISTQDSLDAIERLFKSDI-EAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMI 236 (421)
T ss_pred CCCCCCcEEcCCCcccc-cccHHHHHHHHHHHHHhcc-CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 122222211100 12 2466777665310 123566666665589999866 88999999999999999999
Q ss_pred EeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHH
Q 046900 238 SDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQ 315 (442)
Q Consensus 238 ~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q 315 (442)
+||++..+.+.+.. .....+.. .++ +.+|||.++ +|+|+||+++ ++.+.+.+.. ....+..+++++
T Consensus 237 ~DEv~tg~gr~G~~-~a~~~~~~-----~pD----i~t~gK~l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~gnpl~~ 304 (421)
T PRK09792 237 ADEVQSGFARTGKL-FAMDHYAD-----KPD----LMTMAKSLA-GGMPLSGVVG-NANIMDAPAPGGLGGTYAGNPLAV 304 (421)
T ss_pred EeccccCCCCCCch-hHHHhcCC-----CCc----EEEeehhhc-CCCceEEEEE-cHHHHhccCCCCcCCCCCCCHHHH
Confidence 99999998776642 23332211 123 578999998 9999999998 5666655432 223355788888
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh-CCCeeecCCc-eEEEEEecCCccc-ccChhhHHHHHHHHHHc
Q 046900 316 YLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS-AGIECLKGNA-GLFCWMNLSPLLE-EQTREGELALWDSMLHE 392 (442)
Q Consensus 316 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~-g~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 392 (442)
.++.+.++-.+. .+++++.+ .+.++.....+.|.+ ++. +..+.| |+++|+++++... .........++..++++
T Consensus 305 aaa~a~l~~l~~-~~~~~~~~-~~g~~l~~~l~~l~~~~p~-v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~ 381 (421)
T PRK09792 305 AAAHAVLNIIDK-ESLCERAN-QLGQRLKNTLIDAKESVPA-IAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQ 381 (421)
T ss_pred HHHHHHHHHHHh-hhHHHHHH-HHHHHHHHHHHHHHHhCCC-cceecccceEEEEEecCCccCCcchHHHHHHHHHHHHC
Confidence 865555542110 12233333 333333333333332 333 233455 8999999974311 01112356788888777
Q ss_pred CcEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHHHH
Q 046900 393 VKLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 393 ~gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~ 435 (442)
||.+.+.. .....+|+.++. ++++++++++++|.+++.
T Consensus 382 -Gv~i~~~g----~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 382 -GLLLLTCG----AYGNVIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred -CcEEeecC----CCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 99986421 124689999874 699999999999999874
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.9e-19 Score=171.91 Aligned_cols=348 Identities=16% Similarity=0.108 Sum_probs=213.1
Q ss_pred CCCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCC
Q 046900 41 YEESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRA 116 (442)
Q Consensus 41 ~~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 116 (442)
|..+.....+||+..+. ..+ .++.+.+.+.++.... ..++.. -..+....+++.+.....
T Consensus 33 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~------------~~~~~~-~~~~~~~~la~~L~~~~~--- 96 (408)
T PRK04612 33 RVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKL------------WHTSNV-FYSAPPLKLAEELVTASR--- 96 (408)
T ss_pred EEEECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhc------------cccccc-cCCHHHHHHHHHHHhhCC---
Confidence 33345566788886552 333 3355555555443211 111111 112344566666654321
Q ss_pred ccCCCcEEEecChHHHHHHHHHhhcC--------C-CCeEEEcCCCCcChHHhHhhhcCcEEEE---EecCCC---CCCc
Q 046900 117 KFDLNRIVVTAGATAANELLTFILAD--------P-GDALLVPTPYYPGFDRDLRWRTGIKIVP---IHCDSS---NNFQ 181 (442)
Q Consensus 117 ~~~~~~i~~t~G~~~ai~~~~~~l~~--------~-gd~Vl~~~p~y~~~~~~~~~~~G~~v~~---v~~~~~---~~~~ 181 (442)
..+.++++++++++++.+++.... + ...|+....+|.+....+....|..... -|.... -.|
T Consensus 97 --~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~- 173 (408)
T PRK04612 97 --FAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF- 173 (408)
T ss_pred --CCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC-
Confidence 126899999999999998876431 1 2468888888877644332112211110 011100 011
Q ss_pred CCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCC--HHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHH
Q 046900 182 ITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQ--RSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEIL 259 (442)
Q Consensus 182 ~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~--~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~ 259 (442)
.|++.+++.+.. +..+.++..|.+++|.+++ .+.+++|.++|++|++++|+||+|..+...+.. ....
T Consensus 174 ~d~~~l~~~~~~------~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~----~a~~ 243 (408)
T PRK04612 174 NDVEALEAAMAG------GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTL----FAHW 243 (408)
T ss_pred CCHHHHHHhhCC------CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCch----hhhh
Confidence 267888887742 3456788889888887766 567999999999999999999999986655532 1111
Q ss_pred hhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc--cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHH
Q 046900 260 EARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM--SSFTLISSQTQYLLASMLSNKKFTENYIKTNRE 337 (442)
Q Consensus 260 ~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~ 337 (442)
. .+.+..+.+|||.+| +|+|+||++++ +.+.+.+... ...+..+++++.++.+.|+... + ....+
T Consensus 244 ~------~~~~pdi~t~~K~l~-~G~piga~~~~-~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~---~--~~l~~ 310 (408)
T PRK04612 244 Q------EQVTPDIVTLAKALG-GGFPIGAMLAG-PKVAETMQFGAHGTTFGGNPLAAAVARVALRKLA---S--PQIAA 310 (408)
T ss_pred h------cCCCCCEEEEcchhc-CCCceEEEEEC-HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHH---h--ccHHH
Confidence 1 244566889999998 99999999985 5556555432 2234567888888888876321 1 13344
Q ss_pred HHHHHHHHHHHHHHhC----CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEE
Q 046900 338 RLQKRYQMIIEGLRSA----GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRV 413 (442)
Q Consensus 338 ~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRl 413 (442)
.+++.-+++.+.|+++ ++-.....-|+++.+.+..... ..+..+++.+.++ ||.+.|. +...+|+
T Consensus 311 ~~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~~----~~a~~i~~~l~~~-Gvlv~~~------g~~~lRl 379 (408)
T PRK04612 311 NVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHA----GQAGAILDLAAEH-GLLLLQA------GPDVLRF 379 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEecCchh----hHHHHHHHHHHHC-CeEEeeC------CCCEEEE
Confidence 4455555555555443 3222223445677777642100 1255677777666 9999763 2367999
Q ss_pred Eee-cCCHHHHHHHHHHHHHHHHHHHhhc
Q 046900 414 CFA-NMSEQTLEVALKRIHNFMQKRERRR 441 (442)
Q Consensus 414 s~~-~~~~e~i~~~l~~l~~~l~~~~~~~ 441 (442)
... .++++++++++++|.+++.+..++|
T Consensus 380 ~Ppl~it~eeid~~l~~l~~~l~~~~~~~ 408 (408)
T PRK04612 380 VPALNLTDAELADGLARLRLALADYVAQR 408 (408)
T ss_pred cCCccCCHHHHHHHHHHHHHHHHHHhhcC
Confidence 875 4589999999999999998876654
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-19 Score=174.12 Aligned_cols=155 Identities=18% Similarity=0.197 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH---hHhhhcCcEEEEEec
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR---DLRWRTGIKIVPIHC 174 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~---~~~~~~G~~v~~v~~ 174 (442)
..|++++|++.+ .+..+++++++.++..++.+++++||+|+++++.|+.... .+. ..|++++.++.
T Consensus 50 ~~lE~~la~leg----------~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~-~~G~~v~~v~~ 118 (397)
T PRK05939 50 AALEAKITKMEG----------GVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLR-GLGVEVTMVDA 118 (397)
T ss_pred HHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHH-hcCCEEEEECC
Confidence 488888888764 2334555556899999999999999999999999986543 445 48999988875
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s 254 (442)
.|++++++.+++ ++++|++++|+||||.+. ++++|+++|+++|+++|+|++|+... .+ .
T Consensus 119 -------~d~e~l~~~l~~------~tklV~vesp~NptG~v~---dl~~I~~la~~~gi~livD~t~a~~~----~~-~ 177 (397)
T PRK05939 119 -------TDVQNVAAAIRP------NTRMVFVETIANPGTQVA---DLAGIGALCRERGLLYVVDNTMTSPW----LF-R 177 (397)
T ss_pred -------CCHHHHHHhCCC------CCeEEEEECCCCCCCCHH---hHHHHHHHHHHcCCEEEEECCccccc----cc-C
Confidence 268999998864 889999999999999984 48899999999999999999986321 11 0
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeec
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSY 293 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~ 293 (442)
... .+..+++.|+||.++..|.++|+++++
T Consensus 178 ~~~---------~gaDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 178 PKD---------VGASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred ccc---------cCCEEEEecCeecccCCCCeEEEEEec
Confidence 001 145588999999999889999998874
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=174.46 Aligned_cols=285 Identities=16% Similarity=0.209 Sum_probs=188.9
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEe
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIH 173 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~ 173 (442)
....+++++++++++ .+++++++|+++++..++.++ ..+||+|+++.++|..+...+.. .|++++.++
T Consensus 18 ~~~~~~~~~la~~~~----------~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~-~g~~~~~~~ 86 (352)
T cd00616 18 PKVREFEKAFAEYLG----------VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILL-LGATPVFVD 86 (352)
T ss_pred HHHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHH-cCCeEEEEe
Confidence 357899999999975 356888889999999999988 68999999999999999888884 899999999
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
+++ .++.+|++.+++.+++ ++++|+++ ||+|.+.+ +++|.++|+++++++|+|++|+....... .
T Consensus 87 ~~~-~~~~~d~~~l~~~i~~------~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~~--~ 151 (352)
T cd00616 87 IDP-DTYNIDPELIEAAITP------RTKAIIPV---HLYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYKG--R 151 (352)
T ss_pred cCC-CcCCcCHHHHHHhcCc------CCeEEEEE---CCCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeECC--E
Confidence 875 3578999999988753 78888876 46898877 67778888899999999999984221110 0
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCc--ccCCCCCceeEEEeecCHHHHHHHHHcccc-----------------CCCcHHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLS--KDLGLPGFRVGTIYSYNDKVVTTARRMSSF-----------------TLISSQT 314 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~S--K~~g~~G~RiG~i~~~~~~~~~~~~~~~~~-----------------~~~s~~~ 314 (442)
.+ .. ...+.+.|++ |.++ +.+.|+++++++.+.+.++..... ..++.+.
T Consensus 152 ~~---~~-------~~d~~~~S~~~~K~~~--~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (352)
T cd00616 152 KV---GT-------FGDAGAFSFHPTKNLT--TGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQ 219 (352)
T ss_pred Ec---cc-------CcceeEEcCCCCCCCc--ccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHH
Confidence 11 10 0124556766 9874 345788888666666554432211 0112222
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC-----ceEEEEEecCCcccccChhhHHHHHHH
Q 046900 315 QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGN-----AGLFCWMNLSPLLEEQTREGELALWDS 388 (442)
Q Consensus 315 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (442)
..+.... .+.+++..++.+++.+++.+.|.+. |+++..+. ....+.+.++... ..+..++.+.
T Consensus 220 aa~~~~~-------l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~ 288 (352)
T cd00616 220 AAIGLAQ-------LEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEA----GESRDELIEA 288 (352)
T ss_pred HHHHHHH-------HHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcC----CCCHHHHHHH
Confidence 2211111 1223455566677788888888875 77765432 2233444454310 0135678888
Q ss_pred HHHcCcEEEeCCCCCCCC----------------C-------CCEEEEEee-cCCHHHHHHHHHHHH
Q 046900 389 MLHEVKLNISPGSSCHCS----------------E-------PGWFRVCFA-NMSEQTLEVALKRIH 431 (442)
Q Consensus 389 l~~~~gi~v~pg~~f~~~----------------~-------~~~iRls~~-~~~~e~i~~~l~~l~ 431 (442)
|.++ ||.+.. .+.+. . .+.+||++. ..++++++..++.|+
T Consensus 289 L~~~-gI~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 289 LKEA-GIETRV--HYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred HHHC-CCCeee--ecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 8666 996642 12110 0 157999886 338999999988763
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-19 Score=174.55 Aligned_cols=170 Identities=19% Similarity=0.305 Sum_probs=133.0
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEec
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHC 174 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~ 174 (442)
...+|++++|+|++ .++++.++|+++++.+++.++ +++||+|+++.|+|..+...+.. .|++++.+++
T Consensus 34 ~~~~le~~la~~~g----------~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~-~G~~~v~vd~ 102 (379)
T PRK11658 34 KNQALEQAFCQLTG----------NQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVL-LGATPVMVDV 102 (379)
T ss_pred hHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHH-cCCEEEEEec
Confidence 46899999999986 246888999999999999999 89999999999999999888884 9999999998
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc-CCCCCCCcc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG-SAFSSSEFV 253 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~-~~~~~~~~~ 253 (442)
+. ++|.+|++.+++.+.+ ++|+|+ |+||+|...+ +++|.++|+++|++||+|++|+. ..+.+..
T Consensus 103 ~~-~~~~~d~~~l~~~i~~------~tkav~---~~~~~G~~~d---~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~-- 167 (379)
T PRK11658 103 DR-DTLMVTPEAIEAAITP------RTKAII---PVHYAGAPAD---LDAIRAIGERYGIPVIEDAAHAVGTYYKGRH-- 167 (379)
T ss_pred CC-CcCCcCHHHHHHhccc------CCeEEE---EeCCCCCcCC---HHHHHHHHHHcCCeEEEECCCccCCeECCee--
Confidence 75 3578999999998865 788776 6677999877 67888899999999999999984 2232211
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR 303 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~ 303 (442)
+ .. .+. .+.||++.-.+++.+.|+++.+++.+.+.++.
T Consensus 168 -~---g~------~g~--~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~ 205 (379)
T PRK11658 168 -I---GA------RGT--AIFSFHAIKNITCAEGGLVVTDDDELADRLRS 205 (379)
T ss_pred -c---CC------CCC--EEEeCCCCCcCcccCceEEEECCHHHHHHHHH
Confidence 1 11 122 34566655455777899999877777666554
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-18 Score=170.39 Aligned_cols=360 Identities=13% Similarity=0.089 Sum_probs=206.5
Q ss_pred CCCCCCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|..+.....+||+..+ .+.++ ++.+.+.+.+.... ...+.......+.+..+|+.+.+..+
T Consensus 33 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~------------~~~~~~~~~~~~~~~~la~~L~~~~p-- 98 (443)
T PRK08360 33 AKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDK------------LIHYTPIYGFPVEPLLLAEKLIEIAP-- 98 (443)
T ss_pred eEEEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHh------------ccCccccccCcHHHHHHHHHHHHhCC--
Confidence 34444556778888665 33333 35555555544321 11111111224555667777665422
Q ss_pred CccCCCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCc------------EEEEEecCCCC--C
Q 046900 116 AKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCDSSN--N 179 (442)
Q Consensus 116 ~~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~~~~--~ 179 (442)
..-+.+++++++++|++.+++... .....|+...-+|.+....+....|. .+..+|..... .
T Consensus 99 --~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (443)
T PRK08360 99 --GDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCP 176 (443)
T ss_pred --CCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCcccccc
Confidence 122589999999999999887542 23356777777776653221111221 12222221100 0
Q ss_pred Cc--------CCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCC-HHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 180 FQ--------ITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQ-RSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 180 ~~--------~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~-~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
+. -+.+.+++.+.+. ..+.++++|++..-+||+|.+++ .+.+++|.++|++||+++|+||+|..+.+.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~ 255 (443)
T PRK08360 177 FGKEPGSCKMECVEYIKEKFEGE-VYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGK 255 (443)
T ss_pred ccCchhhhHHHHHHHHHHHHHhc-cCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc
Confidence 11 1133455555421 01246777666633699999887 44699999999999999999999998766554
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc--cccCCCcHHHHHHHHHHhcCchhH
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM--SSFTLISSQTQYLLASMLSNKKFT 328 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~ 328 (442)
.+ ......- .+.+ .++||++| +|+|+||+++ ++.+.+.+... ...+..+++.+.++.+.++...
T Consensus 256 ~~-a~~~~~~------~pDi---itlsK~l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~-- 321 (443)
T PRK08360 256 WF-AIEHFGV------EPDI---ITLGKPLG-GGLPISATIG-RAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIE-- 321 (443)
T ss_pred ch-hhhhcCC------CCCE---EEeccccc-CCceeEEEEE-cHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHH--
Confidence 22 2111111 1223 27799999 9999999999 56666666432 2234567788888877776421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----CCCeeecCCceEEEEEecCCccc--ccChhhHHHHHHHHHHcCcEEEeCCCC
Q 046900 329 ENYIKTNRERLQKRYQMIIEGLRS----AGIECLKGNAGLFCWMNLSPLLE--EQTREGELALWDSMLHEVKLNISPGSS 402 (442)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~gi~v~pg~~ 402 (442)
+. ...+.+++.-+++.+.|++ .++......-|+++-+++..... ......+..+...++++ ||.+.+.
T Consensus 322 ~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-- 395 (443)
T PRK08360 322 EK---NLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWEL-GLIVTFF-- 395 (443)
T ss_pred Hc---CHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHC-CeEEeec--
Confidence 10 1223333333333343332 33222223345666666632110 01112345777788776 9998652
Q ss_pred CCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 403 CHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 403 f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
....+|++.+ .+++++++++++++.+++....++
T Consensus 396 ----~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~~~ 430 (443)
T PRK08360 396 ----SGNVLRIQPPLTIEKEVLDEGLDILEEAIEDVEEG 430 (443)
T ss_pred ----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 1356999765 349999999999999999876543
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-18 Score=173.31 Aligned_cols=285 Identities=14% Similarity=0.118 Sum_probs=175.9
Q ss_pred CCcEEEecChHHHHHHHHHhhcC---------CCC-eEEEcCCCCcChHHhHhhhcCc------------EEEEEecCCC
Q 046900 120 LNRIVVTAGATAANELLTFILAD---------PGD-ALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCDSS 177 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~---------~gd-~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~~~ 177 (442)
.+.+++++++++++..+++.... ++. .|+...-+|.+....+....+- .+..++.
T Consensus 132 ~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~--- 208 (474)
T PLN02624 132 YDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF--- 208 (474)
T ss_pred CCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC---
Confidence 46899999999999998874432 123 5666666776653222101110 0112221
Q ss_pred CCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHH-HHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHH
Q 046900 178 NNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSV-LEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIA 256 (442)
Q Consensus 178 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~-l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~ 256 (442)
-|++.+++.++. ...++.+|++..++|++|.+++.++ +++|.++|++||+++|+||+|..+...+..+ ..
T Consensus 209 ----~d~~~l~~~l~~---~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~-a~- 279 (474)
T PLN02624 209 ----GDLDALEKIFEE---DGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKML-AC- 279 (474)
T ss_pred ----CCHHHHHHHHHh---CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchh-hH-
Confidence 267889988864 2346888888888999999988775 9999999999999999999998765554311 11
Q ss_pred HHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHHHhcCch--hHHHHH
Q 046900 257 EILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLASMLSNKK--FTENYI 332 (442)
Q Consensus 257 ~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~--~~~~~~ 332 (442)
.... .... +.++||.+|.+++++|++++ ++.+...+.... ..+..+++.+.++.+.|+... .+.++.
T Consensus 280 ~~~~-----i~pD---iv~lsK~lggG~~pigav~~-~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~ 350 (474)
T PLN02624 280 DWEE-----VRPD---VVILGKALGGGVIPVSAVLA-DKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERS 350 (474)
T ss_pred HhcC-----CCCC---EEEecccccCCCCcceeeee-cHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHH
Confidence 1111 1122 33479999966699999998 455555544322 223467788888877775321 011223
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEE
Q 046900 333 KTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFR 412 (442)
Q Consensus 333 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iR 412 (442)
.++.+.++++.+.+.+.+.. .+....+.|. ++.+.+..... ....+.++++.|.++ ||.+.|+. .+++|
T Consensus 351 ~~~~~~l~~~L~~l~~~~~~-~i~~vrg~G~-~~~i~l~~~~~--~~~~a~~~~~~L~e~-GV~v~p~~------~~~lR 419 (474)
T PLN02624 351 AKLGQELRDQLQKIQKQFPK-LIKEVRGRGL-LNAVVLNSPKL--GPVSAYDVCLKLKER-GLLAKPTH------DTIIR 419 (474)
T ss_pred HHHHHHHHHHHHHHHHhCCC-ceEEEEeeEE-EEEEEecCCCc--ChHHHHHHHHHHHhC-CeEEecCC------CCEEE
Confidence 33333333333333222211 1333334444 44455532110 012356788887665 99998852 46899
Q ss_pred EEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 413 VCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 413 ls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
|++. .++++++++++++|.+++++
T Consensus 420 ~~p~l~~t~e~id~~l~~L~~~l~~ 444 (474)
T PLN02624 420 LAPPLSISEDELQECSKALSDVLEH 444 (474)
T ss_pred EECCccCCHHHHHHHHHHHHHHHHH
Confidence 9864 44899999999999998875
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-19 Score=172.06 Aligned_cols=280 Identities=15% Similarity=0.153 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----HhhhcCcEEEEEe
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD----LRWRTGIKIVPIH 173 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~~G~~v~~v~ 173 (442)
..|++++|++.+ .+++++++|+++|+..++.+++++||+|++++|.|+..... +. ..|+++..++
T Consensus 53 ~~lE~~lA~l~g----------~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~-~~gi~v~~~d 121 (377)
T TIGR01324 53 FALQDAMCELEG----------GAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLK-RMGVDITYYD 121 (377)
T ss_pred HHHHHHHHHHhC----------CCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHH-hcCcEEEEEC
Confidence 688999998864 46899999999999999999999999999999999876543 23 3788877765
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
.. +.+.+++.+++ ++|+|++++|+||+|.+.+ +++|+++|+++|+++|+|++|+.... ..
T Consensus 122 ~~-------~~e~l~~~i~~------~tklV~lesp~Np~g~~~d---l~~I~~la~~~g~~livD~t~a~g~~----~~ 181 (377)
T TIGR01324 122 PL-------IGEDIATLIQP------NTKVLFLEAPSSITFEIQD---IPAIAKAARNPGIVIMIDNTWAAGLL----FK 181 (377)
T ss_pred CC-------CHHHHHHhcCC------CceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCCccccc----cC
Confidence 32 22678877754 7899999999999988754 88999999999999999999985332 11
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHH-HccccC-CCcHHHHHHHHHHhcCchhHHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTAR-RMSSFT-LISSQTQYLLASMLSNKKFTEN 330 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~-~~~~~~-~~s~~~q~~~~~~l~~~~~~~~ 330 (442)
++ .+ +..++++|++|.+| .++...|+++++ +...+.+. .....+ ..++.....+...++.
T Consensus 182 pl-~~---------gaDivv~S~tK~l~G~~d~~gG~v~~~-~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~t------ 244 (377)
T TIGR01324 182 PL-EH---------GVDISIQAGTKYLVGHSDIMIGTVVAN-ARTWDQLREHSYLMGQMVDADDAYTTLRGLRT------ 244 (377)
T ss_pred cc-cc---------CceEEEecCceeccCCCCceEEEEEeC-HHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhh------
Confidence 11 11 34488999999985 344778998884 44444333 222222 3455444433333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CC-eeec-----------------CCceEEEEEecCCcccccChhhHHHHHHHHHH
Q 046900 331 YIKTNRERLQKRYQMIIEGLRSA-GI-ECLK-----------------GNAGLFCWMNLSPLLEEQTREGELALWDSMLH 391 (442)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~-----------------~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 391 (442)
+..+.++..++...+.+.|+++ .+ +++- ..+| .+.+++... +.+...++.+.| +
T Consensus 245 -l~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~-~~s~~l~~~----~~~~~~~~~~~l-~ 317 (377)
T TIGR01324 245 -LGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSG-LFSFVLQRL----TQKQVHAFLDHL-Q 317 (377)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCc-eEEEEECCC----CHHHHHHHHHhC-C
Confidence 3333455556666677788764 22 1211 1244 344555421 122345666655 3
Q ss_pred cCcEEEeCCCCCCC-----------------CCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 392 EVKLNISPGSSCHC-----------------SEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 392 ~~gi~v~pg~~f~~-----------------~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
-.++.+.-|..... ..++.||||++- |+.+.+++.|.++++
T Consensus 318 ~~~~~~slG~~~sl~~~~~~~~~~~~~~~~~~~~~liR~svGl---E~~~dl~~dl~~al~ 375 (377)
T TIGR01324 318 LFGLGYSWGGYESLALCNQPELGHRPNIKRNLEGPLIRVHIGL---ENVDDLKADLKAGFE 375 (377)
T ss_pred cceEeccCCCccceeecCCCCCCHHHHHhccCCCCEEEEEeCC---CCHHHHHHHHHHHHh
Confidence 32444333322110 112579999996 346666777777664
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.85 E-value=9e-19 Score=173.21 Aligned_cols=218 Identities=17% Similarity=0.213 Sum_probs=150.4
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----Hhhh
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD----LRWR 164 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~ 164 (442)
..|... |. +.++++++++.+..+ .++.++++++++++.+++ .++++||+|+++.|.|+.+... +. .
T Consensus 125 ~~Y~r~-gn-pt~~aLE~~lA~leg------~e~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~-~ 194 (464)
T PLN02509 125 YDYTRS-GN-PTRDALESLLAKLDK------ADRAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVP-R 194 (464)
T ss_pred CccCCC-CC-HHHHHHHHHHHHHhC------CCEEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHH-H
Confidence 346654 54 468888888877543 567788888889987766 5789999999999999987633 34 3
Q ss_pred cCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc
Q 046900 165 TGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG 244 (442)
Q Consensus 165 ~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~ 244 (442)
.|++++.++. .|++++++++.+ ++|+|++++|+||||.+ .++++|+++|+++|+++|+|++|+.
T Consensus 195 ~G~~v~~vd~-------~d~e~l~~ai~~------~TklV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~ 258 (464)
T PLN02509 195 SGVVVKRVNT-------TNLDEVAAAIGP------QTKLVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLVDNSIMS 258 (464)
T ss_pred CCeEEEEeCC-------CCHHHHHHhCCc------CCeEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECCccc
Confidence 7998888763 367888888754 78999999999999997 4588999999999999999999875
Q ss_pred CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHH
Q 046900 245 SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASM 321 (442)
Q Consensus 245 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~ 321 (442)
... +. ++ .+ +..+++.|++|.++-+| .=.|++++.++.+.+.++..... ...++...+.+..-
T Consensus 259 ~~~-~~---pl-~~---------gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~ 324 (464)
T PLN02509 259 PVL-SR---PL-EL---------GADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRG 324 (464)
T ss_pred ccc-CC---hh-hc---------CCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhh
Confidence 332 11 11 11 23478899999986433 34688877555544443322221 22344443333333
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
|+ .+..+.++..++...+.+.|+++
T Consensus 325 L~-------tL~~R~~r~~~nA~~la~~L~~~ 349 (464)
T PLN02509 325 IK-------TMALRIEKQQENARKIAMYLSSH 349 (464)
T ss_pred hh-------hHHHHHHHHHHHHHHHHHHHhcC
Confidence 32 24455566677788888888775
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-20 Score=161.68 Aligned_cols=340 Identities=17% Similarity=0.154 Sum_probs=217.8
Q ss_pred CceeeeecccccccHHHHHHHHHhCCCCc-ccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVSFDLLEEYLEQQPEAS-TWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.++++|+.| |+++....++.+++..++. .++.|.+...-+.+|.+.+ ..|...||+|.+ .++.++.
T Consensus 67 k~ilnFcaN-nYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iH--k~LE~kiAqfh~----------rED~ily 133 (417)
T KOG1359|consen 67 KKILNFCAN-NYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIH--KLLESKIAQFHG----------REDTILY 133 (417)
T ss_pred cceeeeccc-ccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHH--HHHHHHHHHHhC----------CCceEEe
Confidence 467888865 5554332222222222211 1224555556667776654 678888888865 6778888
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+.+..++..++.++..|.|.|+-+.-.+....+.+++ +. + + -.+|+-.++..+.+..+ .+.|+|+.
T Consensus 134 pscfdANag~feail~pedAvfSDeLNhASIIdGirL-ck-r---y-------~h~dv~~l~~~l~~a~k--~r~klv~T 199 (417)
T KOG1359|consen 134 PSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRL-CK-R---Y-------RHVDVFDLEHCLISACK--MRLKLVVT 199 (417)
T ss_pred ccccccchHHHHHhcChhhhhhccccccchhhhhhHH-Hh-h---h-------ccchhHHHHHHHHHhhh--heEEEEEe
Confidence 8999999999999999999999999999988887774 43 1 0 12567777777665432 35555554
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
..--...|.+.| +++|.+++++||.++++||+|+.+.++... ....+...- +.+..++.++++|++| |.-
T Consensus 200 Dg~FSMDGdiaP---l~ei~~La~kYgaLlfiDecHaTgf~G~tG-rGt~E~~~v----m~~vdiinsTLgKAlG--ga~ 269 (417)
T KOG1359|consen 200 DGVFSMDGDIAP---LEEISQLAKKYGALLFIDECHATGFFGETG-RGTAEEFGV----MGDVDIINSTLGKALG--GAS 269 (417)
T ss_pred cceeccCCCccc---HHHHHHHHHhcCcEEEEeecccceeecCCC-CChHHHhCC----CCcceehhhhhhhhhc--CCC
Confidence 455688999999 777888888999999999999988776432 222222221 2356677899999986 333
Q ss_pred eEEEeecCHHHHHHHHHcc-ccCC---CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc
Q 046900 287 VGTIYSYNDKVVTTARRMS-SFTL---ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA 362 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~~-~~~~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 362 (442)
.||..+| ..++..+++.. ++.. .++.....+.+++. .+.. -.+...+.+.+.+++.+.++..|+.+.....
T Consensus 270 GGyttgp-~~li~llrqr~RpylFSnslppavV~~a~ka~d---llm~-s~~~i~~~~a~~qrfr~~me~aGftIsg~~h 344 (417)
T KOG1359|consen 270 GGYTTGP-KPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYD---LLMV-SSKEIQSRQANTQRFREFMEAAGFTISGASH 344 (417)
T ss_pred CCCccCC-hhHHHHHHhcCCceeecCCCChhhhhhhHHHHH---HHHh-hHHHHHHHHHHHHHHHHHHHhcCceecCCCC
Confidence 4999994 56666776544 3322 22211222222221 1111 1233455667777888888878988765333
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC--CCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC--SEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~--~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~~ 438 (442)
. .+-+-+.+. .-+...+++|++. ||.|.. ..|.. ++...+|+.++. .++|+++++++++.++.+.+.
T Consensus 345 P-I~pv~lGda------~lA~~~ad~lLk~-Gi~Vig-fs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~~ 414 (417)
T KOG1359|consen 345 P-ICPVMLGDA------RLASKMADELLKR-GIYVIG-FSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFLN 414 (417)
T ss_pred C-ccceecccH------HHHHHHHHHHHhc-CceEEe-ecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhhc
Confidence 2 222222221 1367888999998 999984 33332 234568887762 389999999999999877643
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-18 Score=172.65 Aligned_cols=277 Identities=14% Similarity=0.151 Sum_probs=181.6
Q ss_pred CCcEEEecChHHHHHHHHHhhc----------CCCCeEEEcCCCCcCh-HHhHhhhcCc------------EEEEEecCC
Q 046900 120 LNRIVVTAGATAANELLTFILA----------DPGDALLVPTPYYPGF-DRDLRWRTGI------------KIVPIHCDS 176 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~----------~~gd~Vl~~~p~y~~~-~~~~~~~~G~------------~v~~v~~~~ 176 (442)
.+.+++++++++++..+++.+. ...+.|+...-+|.+. ...+.. .|- .+..++.
T Consensus 94 ~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-- 170 (401)
T TIGR01885 94 YDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISM-STDPDSRTNFGPYVPGFKKIPY-- 170 (401)
T ss_pred CCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhC-cCCcccccccCCCCCCceEeCC--
Confidence 3689999999999999988752 2235777778787753 333332 221 1222221
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHH-HHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccH
Q 046900 177 SNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRS-VLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSI 255 (442)
Q Consensus 177 ~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~-~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~ 255 (442)
.|++.|++.+++. +.++.++++..+++++|.+.+.+ .+++|.++|++|++++|+||+|..+.+.+..+ +.
T Consensus 171 -----~d~~~le~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~-~~ 241 (401)
T TIGR01885 171 -----NNLEALEEALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLL-CV 241 (401)
T ss_pred -----CCHHHHHHHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhh-HH
Confidence 2689999988653 23667777777799999988655 59999999999999999999998765545321 11
Q ss_pred HHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc-c-ccCCCcHHHHHHHHHHhcCchhHHHHHH
Q 046900 256 AEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM-S-SFTLISSQTQYLLASMLSNKKFTENYIK 333 (442)
Q Consensus 256 ~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~-~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~ 333 (442)
+... ....++ ++||.++..|+|+|++++ ++.+.+.++.. . ..+..+++.+.++.+.|+... +.
T Consensus 242 -~~~~-----~~~di~---~~gK~l~~g~~~ig~v~~-~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~--~~--- 306 (401)
T TIGR01885 242 -DHEN-----VKPDIV---LLGKALSGGVYPVSAVLA-DDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLE--EE--- 306 (401)
T ss_pred -hhcC-----CCCCEE---EeeccccCCCCCcEEEEE-cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHH--hc---
Confidence 1111 012232 578999865699999999 46666665431 1 123456888888877775321 11
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCee---ecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCE
Q 046900 334 TNRERLQKRYQMIIEGLRSAGIEC---LKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGW 410 (442)
Q Consensus 334 ~~~~~~~~~~~~l~~~L~~~g~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~ 410 (442)
...++.++..+++.+.|++++..+ ..+.|. +..+.++.... .....+++..|.++ ||.+.|+. ++.
T Consensus 307 ~l~~~~~~~~~~~~~~L~~l~~~~~~~~~g~g~-~~~i~~~~~~~---~~~~~~l~~~l~~~-Gv~v~~~~------~~~ 375 (401)
T TIGR01885 307 KLAENAEKLGEIFRDQLKKLPKPIITEVRGRGL-LNAIVIDESKT---GRTAWDLCLKLKEK-GLLAKPTH------GNI 375 (401)
T ss_pred cHHHHHHHHHHHHHHHHHhccCCceeEEeecCe-eEEEEeccCcc---hhHHHHHHHHHHhC-CEEEEecC------CCE
Confidence 233455666788888888764333 234454 44344433110 01357888888766 99998742 468
Q ss_pred EEEEee-cCCHHHHHHHHHHHHHHH
Q 046900 411 FRVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 411 iRls~~-~~~~e~i~~~l~~l~~~l 434 (442)
+|+++. .++++++++++++|.+++
T Consensus 376 lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 376 IRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred EEEeCCccCCHHHHHHHHHHHHHHh
Confidence 999985 448999999999999875
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-18 Score=169.81 Aligned_cols=357 Identities=12% Similarity=0.072 Sum_probs=211.4
Q ss_pred CCCCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|..+...+.+||+..+. ..+ .++.+.+.+.+...... ...+. ....+....+|+.+......
T Consensus 32 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~----------~~~~~--~~~~~~~~~la~~l~~~~p~- 98 (421)
T PRK06777 32 ATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFT----------HTAYQ--IVPYASYVTLAERINALAPI- 98 (421)
T ss_pred CEEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcc----------ccccc--ccCChHHHHHHHHHHHhCCC-
Confidence 444455567788986553 223 23455555554432110 01111 01123445566666543210
Q ss_pred CccCCCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCcE-------------EEEEecCCC-CC
Q 046900 116 AKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGIK-------------IVPIHCDSS-NN 179 (442)
Q Consensus 116 ~~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~~-------------v~~v~~~~~-~~ 179 (442)
-..+.+++++++++|++.+++... .....|+...-+|.+....+....|.. +..++.... .+
T Consensus 99 --~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 176 (421)
T PRK06777 99 --DGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHG 176 (421)
T ss_pred --CCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccC
Confidence 113689999999999998877542 223568888888877654332112210 111111110 00
Q ss_pred --CcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHH
Q 046900 180 --FQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIA 256 (442)
Q Consensus 180 --~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~ 256 (442)
..-+++.+++.+.+.. ...++.++++....++.|. +.+.+.+++|.++|++||+++|.||+|..+.+.+. +.+..
T Consensus 177 ~~~~~~~~~l~~~~~~~~-~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~-~~~~~ 254 (421)
T PRK06777 177 VSVEEALSSVERLFKADI-APDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGK-LFAME 254 (421)
T ss_pred cCHHHHHHHHHHHHHhcc-CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCc-hhhhh
Confidence 0112556777665310 1235555555544678885 57889999999999999999999999998766663 22222
Q ss_pred HHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc--cccCCCcHHHHHHHHHHhcCchhHHHHHHH
Q 046900 257 EILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM--SSFTLISSQTQYLLASMLSNKKFTENYIKT 334 (442)
Q Consensus 257 ~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 334 (442)
.+.. ... +.++||.++ +|+|+||+++ ++.+.+.+... ...+..+++++.++.+.|+.. ++ ..
T Consensus 255 ~~~~------~pD---iv~~sK~l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~---~~--~~ 318 (421)
T PRK06777 255 YYDV------KPD---LITMAKSLG-GGMPISAVVG-RAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVI---AE--EK 318 (421)
T ss_pred hcCC------CCC---EEeeehhhc-CCCceEEEEE-cHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--cc
Confidence 2211 122 237999998 9999999999 56666665432 223556889999988888632 11 24
Q ss_pred HHHHHHHHHHHHHHHHHhC----C-CeeecCCceEEEEEecCCcc-cccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCC
Q 046900 335 NRERLQKRYQMIIEGLRSA----G-IECLKGNAGLFCWMNLSPLL-EEQTREGELALWDSMLHEVKLNISPGSSCHCSEP 408 (442)
Q Consensus 335 ~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~ 408 (442)
..+.++++.+++.+.|++. + +....+.|.+|. +.+.... .....+....+...++++ ||.+.|+..|+
T Consensus 319 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~-i~~~~~~~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~~g---- 392 (421)
T PRK06777 319 LCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVA-VEFNDPQTGKPSPEFTRQYQRQALEE-GLLLLSCGVHG---- 392 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEE-EEEecCccCCccHHHHHHHHHHHHhC-CeEEeecCCCC----
Confidence 5556666667777766653 2 334557777665 3332210 001111244555666665 99999987663
Q ss_pred CEEEEEee-cCCHHHHHHHHHHHHHHHH
Q 046900 409 GWFRVCFA-NMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 409 ~~iRls~~-~~~~e~i~~~l~~l~~~l~ 435 (442)
+++||++. .++++++++++++|.+++.
T Consensus 393 ~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 393 NVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 58999986 4589999999999998874
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=172.69 Aligned_cols=347 Identities=13% Similarity=0.103 Sum_probs=205.6
Q ss_pred CCCCCceeeeeccc--cc--ccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLAE--NQ--VSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~~--n~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+||+..+. .. ++++.+.+.+.+..... ...|....+..+|.+.+++.+ . .
T Consensus 46 d~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~-----------~~~~~~~~~~~~la~~L~~~~----~-----~ 105 (426)
T PRK00062 46 DVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKG-----------LSFGAPTELEVELAELVIELV----P-----S 105 (426)
T ss_pred eCCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhC-----------CcCCCCCHHHHHHHHHHHHhC----C-----C
Confidence 34566788998764 22 23455555444433210 112223334445555555442 1 2
Q ss_pred CCcEEEecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhhcCcEEE----------EEecCCCCCC---cCCH
Q 046900 120 LNRIVVTAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTGIKIV----------PIHCDSSNNF---QITP 184 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~G~~v~----------~v~~~~~~~~---~~d~ 184 (442)
.+.+++++++++|+..+++.... .++.|+..+++|.++...+....|.... ..+.. .+.+ ..|+
T Consensus 106 ~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~ 184 (426)
T PRK00062 106 IEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFA-KHTLTAPYNDL 184 (426)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccc-cceEEcCCCCH
Confidence 56899999999999999887533 3578999999999976433211111000 00000 0000 1368
Q ss_pred HHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCC-HHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhc
Q 046900 185 QALEAAYKEAESKDMRVRGVLITNPSNPLGATIQ-RSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQ 263 (442)
Q Consensus 185 ~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~-~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~ 263 (442)
+.+++.+.+. ..++.+|++..-...+|.+.+ .+.+++|.++|++|++++|+||+|..+.. +..+ ..+...-
T Consensus 185 ~~l~~~i~~~---~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~-g~~~--~~~~~~~-- 256 (426)
T PRK00062 185 EAVEELFEEY---GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRV-ALGG--AQGYYGV-- 256 (426)
T ss_pred HHHHHHHHhC---CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcccc-CCcc--HHHHhCC--
Confidence 8898888642 235666666533444888876 77799999999999999999999997633 3211 1111110
Q ss_pred CCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc---c--ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 046900 264 YKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM---S--SFTLISSQTQYLLASMLSNKKFTENYIKTNRER 338 (442)
Q Consensus 264 ~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~---~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 338 (442)
.++ +.+|||.++ .|+++|++++ ++.+.+.+... . +.+..+++.+.++.+.|+...- ++..++.++.
T Consensus 257 --~pD----i~~~gK~l~-~G~p~ga~~~-~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~-~~~~~~~~~~ 327 (426)
T PRK00062 257 --TPD----LTTLGKIIG-GGLPVGAFGG-RREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKE-PGFYEELEAL 327 (426)
T ss_pred --Ccc----hHhhhhHhh-CCCcceeeeE-HHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhc-chHHHHHHHH
Confidence 112 468999998 8999999988 56677766421 1 1235678888887777763221 1234444444
Q ss_pred HHHHHHHHHHHHHhCCCeeec-CCceEEEEEecCCccc-------ccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCE
Q 046900 339 LQKRYQMIIEGLRSAGIECLK-GNAGLFCWMNLSPLLE-------EQTREGELALWDSMLHEVKLNISPGSSCHCSEPGW 410 (442)
Q Consensus 339 ~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~ 410 (442)
....++.+.+.+.+.++.... +.|. ++-+.+..... ......+..+...|+++ ||.+.|.. + +.
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~vrg~G~-~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-Gv~v~~~~-~-----~~ 399 (426)
T PRK00062 328 TKRLAEGLKEAAKKAGIPLTVNRVGS-MFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDE-GVYLAPSQ-F-----EA 399 (426)
T ss_pred HHHHHHHHHHHHHHcCCceEEEEecc-eEEEEEecCCCcchhhhccccHHHHHHHHHHHHHC-CeEeecCC-c-----Cc
Confidence 555555555555556655433 4444 44444432100 00111245778888776 99998742 1 24
Q ss_pred EEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 411 FRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 411 iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+++++.. +++++++++++|.+++.++
T Consensus 400 ~~~~~~~-t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 400 GFVSAAH-TDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred eeeeccC-CHHHHHHHHHHHHHHHHhh
Confidence 6777654 8999999999999998753
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-18 Score=151.94 Aligned_cols=355 Identities=18% Similarity=0.282 Sum_probs=243.7
Q ss_pred CCCCCCCCCceeeeecccccc----c--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhC
Q 046900 40 PYEESTNPSGVIQMGLAENQV----S--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRG 113 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~~n~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~ 113 (442)
.|..+..|..+ ||+++.-.. | .+.+++.-....... .-++.|-|..|++.++++.++.+-....
T Consensus 23 ~y~~d~~p~Kv-nL~igAYRtd~g~PWvLPvVk~~e~~i~~d~---------s~NHEYLpi~Gl~~F~~~A~el~lg~~s 92 (410)
T KOG1412|consen 23 SYGEDLDPVKV-NLGIGAYRTDDGKPWVLPVVKKAEKKIANDQ---------SLNHEYLPILGLPTFTKAATELLLGADS 92 (410)
T ss_pred HhcccCCccee-ecccceEEcCCCCeeEehhhhhhhhhccCch---------hccchhccccCchhhhhhhHHHhcCCCc
Confidence 34555555554 888775321 2 244443322222111 2246799999999999999987643211
Q ss_pred CCCccCCCcE--EEecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhhcC-cEEEEEecCCCCCCcCCHHHHH
Q 046900 114 GRAKFDLNRI--VVTAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTG-IKIVPIHCDSSNNFQITPQALE 188 (442)
Q Consensus 114 ~~~~~~~~~i--~~t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~G-~~v~~v~~~~~~~~~~d~~~l~ 188 (442)
..+..+.+ +-+-+++.|+.+....|.. +...|.+.+|+|......++. .| ..+..++.-..+.-.+|.+.+.
T Consensus 93 --~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~-aGf~tv~~Y~yWd~~~k~~d~e~~L 169 (410)
T KOG1412|consen 93 --PAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEK-AGFTTVATYPYWDAENKCVDLEGFL 169 (410)
T ss_pred --hhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHH-cCCceeeeeeeecCCCceecHHHHH
Confidence 11233432 3344677888877655521 346799999999999999985 88 4556666655556678999998
Q ss_pred HHHHHHHhcCCceeEEEEeCC-CCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC--cccHHHHHhhhcCC
Q 046900 189 AAYKEAESKDMRVRGVLITNP-SNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE--FVSIAEILEARQYK 265 (442)
Q Consensus 189 ~~l~~~~~~~~~~~~v~l~~P-~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~--~~s~~~~~~~~~~~ 265 (442)
..|+... .-..+++..+ +||||.-.+.|++.+|++..++.+.+.+.|-+|..|.-++.. ...+..+..+
T Consensus 170 sdl~~AP----e~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~---- 241 (410)
T KOG1412|consen 170 SDLESAP----EGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQ---- 241 (410)
T ss_pred HHHhhCC----CCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhc----
Confidence 8887632 2224455555 899999999999999999999999999999999997754322 2223334433
Q ss_pred CCCcEEEEecCcccCCCCCceeEEEe--ecCHHHHHHHHHc------cccCCCcHHHHHHHHHHhcCchhHHHH---HHH
Q 046900 266 DSERVHIVYSLSKDLGLPGFRVGTIY--SYNDKVVTTARRM------SSFTLISSQTQYLLASMLSNKKFTENY---IKT 334 (442)
Q Consensus 266 ~~~~vi~~~S~SK~~g~~G~RiG~i~--~~~~~~~~~~~~~------~~~~~~s~~~q~~~~~~l~~~~~~~~~---~~~ 334 (442)
...++++.||+|.||+.+-|+|-+. ..++.++..+... ......+.....++...|+.++..++| ++.
T Consensus 242 -g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~ 320 (410)
T KOG1412|consen 242 -GFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKT 320 (410)
T ss_pred -CCeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHH
Confidence 2457889999999999999999753 4455555443321 122334456777889999998876666 445
Q ss_pred HHHHHHHHHHHHHHHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCE
Q 046900 335 NRERLQKRYQMIIEGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGW 410 (442)
Q Consensus 335 ~~~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~ 410 (442)
+..++++.|..|.+.|..++ |+.+..+-|||-+-.+.. .-.+.|.+++.|.+.+ +|
T Consensus 321 MssRI~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGLtp-----------~qV~~li~~h~vyLl~--------~G- 380 (410)
T KOG1412|consen 321 MSSRIKKMRTALRDHLVALKTPGTWDHITQQIGMFSYTGLTP-----------AQVDHLIENHKVYLLS--------DG- 380 (410)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhccceeecCCCH-----------HHHHHHHHhceEEEec--------CC-
Confidence 67788899999999988873 555567889888765543 3457788888999876 34
Q ss_pred EEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 411 FRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 411 iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
||+++.++...++...++|.+.++..
T Consensus 381 -RInisGLN~~NveyVAkAIde~Vr~~ 406 (410)
T KOG1412|consen 381 -RINISGLNMKNVEYVAKAIDETVRAI 406 (410)
T ss_pred -cEeeeccccccHHHHHHHHHHHHHhh
Confidence 89998777777888888888877654
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-18 Score=165.86 Aligned_cols=212 Identities=14% Similarity=0.153 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----HhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD----LRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~~G~~v~~v 172 (442)
..+.++++++.+....+ ..+.+ +++++++|+..++.+++++||+|+++.|.|+++... ++ ..|+++..+
T Consensus 62 gnPt~~~Le~~la~le~-----~~~~v-~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~-~~Gi~v~~v 134 (395)
T PRK05967 62 GTPTTDALCKAIDALEG-----SAGTI-LVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLK-RLGVEVEYY 134 (395)
T ss_pred CChHHHHHHHHHHHHhC-----CCCEE-EECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHH-hcCeEEEEe
Confidence 35666666666654322 23444 555578999999999999999999999999987653 35 489998887
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+.+ +.+.+++++++ ++|+|++++|+||++.+ .++++|+++|+++|+++|+|++|+...+
T Consensus 135 d~~-------~~e~l~~al~~------~TklV~lesPsNP~l~v---~dl~~I~~la~~~g~~vvVD~t~a~p~~----- 193 (395)
T PRK05967 135 DPE-------IGAGIAKLMRP------NTKVVHTEAPGSNTFEM---QDIPAIAEAAHRHGAIVMMDNTWATPLY----- 193 (395)
T ss_pred CCC-------CHHHHHHhcCc------CceEEEEECCCCCCCcH---HHHHHHHHHHHHhCCEEEEECCccCcee-----
Confidence 532 34778888765 78999999999997654 5699999999999999999999985321
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHHHcc-cc-CCCcHHHHHHHHHHhcCchhHH
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARRMS-SF-TLISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~~~-~~-~~~s~~~q~~~~~~l~~~~~~~ 329 (442)
.....+ +--+++.|.+|.++ -.++-.|+++. ++.+.+.+.... .. ..+++...+.+..-+++
T Consensus 194 ~~pl~~---------GaDivv~S~tKy~~Gh~d~~~G~v~~-~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~T----- 258 (395)
T PRK05967 194 FRPLDF---------GVDISIHAATKYPSGHSDILLGTVSA-NEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRT----- 258 (395)
T ss_pred cChhHc---------CCCEEEEecccccCCCCCeeEEEEEc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHcCccc-----
Confidence 122223 33388999999864 34577887776 444433333221 22 23455554444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
+.-+.++..++...+.+.|+++
T Consensus 259 --l~lR~~~~~~na~~lA~~L~~h 280 (395)
T PRK05967 259 --MGIRLEHHRKSALEIARWLEGR 280 (395)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhC
Confidence 2233344456666777888775
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=170.52 Aligned_cols=284 Identities=24% Similarity=0.305 Sum_probs=195.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCC-CcEEEecChHHHHHHHHHhh---cCCCCeEEEcCCCCcChH----HhHhhhcCcE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDL-NRIVVTAGATAANELLTFIL---ADPGDALLVPTPYYPGFD----RDLRWRTGIK 168 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~-~~i~~t~G~~~ai~~~~~~l---~~~gd~Vl~~~p~y~~~~----~~~~~~~G~~ 168 (442)
..+.|+.++++++ +++ ++|++++|++.++..++.++ .++||+|++..-.|+... ...+ +.|++
T Consensus 45 ~~~~r~~la~~lg--------~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~~g~~ 115 (371)
T PF00266_consen 45 LEEAREALAKLLG--------APPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAK-RKGAE 115 (371)
T ss_dssp HHHHHHHHHHHHT--------SSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHH-HTTEE
T ss_pred HHHHHHHHHHhcC--------Cccccccccccccchhhhhhhhccccccccccccccccccccccccccccccc-cchhh
Confidence 4577777777775 567 79999999999999999999 789999999998887765 2233 47999
Q ss_pred EEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCC
Q 046900 169 IVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS 248 (442)
Q Consensus 169 v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~ 248 (442)
+..++.+.++ .+|++.+++.+.+ ++++++++..+|-||..++ +++|.++|+++++++++|.+++-..
T Consensus 116 v~~i~~~~~~--~~~~~~~~~~l~~------~~~lv~~~~~~~~tG~~~p---i~~I~~~~~~~~~~~~vD~~~~~g~-- 182 (371)
T PF00266_consen 116 VRVIPADPGG--SLDLEDLEEALNP------DTRLVSISHVENSTGVRNP---IEEIAKLAHEYGALLVVDAAQSAGC-- 182 (371)
T ss_dssp EEEEEEGTTS--SCSHHHHHHHHHT------TESEEEEESBETTTTBBSS---HHHHHHHHHHTTSEEEEE-TTTTTT--
T ss_pred hccccccccc--hhhhhhhhhhhcc------ccceEEeecccccccEEee---eceehhhhhccCCceeEechhcccc--
Confidence 9999987644 4789999999975 8999999999999999999 7788899999999999999998422
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc---------------------c
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS---------------------F 307 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~---------------------~ 307 (442)
....+..+ +--+++.|..|.+|.+| +|+++.+ +...+.++.... +
T Consensus 183 --~~id~~~~---------~~D~~~~s~~Kl~gp~G--~g~l~v~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (371)
T PF00266_consen 183 --VPIDLDEL---------GADFLVFSSHKLGGPPG--LGFLYVR-PEAIERLRPAKPGGGYLDFPSLQEYGLADDARRF 248 (371)
T ss_dssp --SS--TTTT---------TESEEEEESTSTTSSST--EEEEEEE-HHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGS
T ss_pred --cccccccc---------ccceeeecccccCCCCc--hhhheeh-hhhhhccccccccccccccccchhcccccccccc
Confidence 11222222 33367899999555555 7999985 444444432111 1
Q ss_pred --CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec----CCceEEEEEecCCcccccChh
Q 046900 308 --TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK----GNAGLFCWMNLSPLLEEQTRE 380 (442)
Q Consensus 308 --~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~----~~~g~~~~~~~~~~~~~~~~~ 380 (442)
++.+.+...++...++.. .+.-+++.+++..+..+++.+.|.+. ++.+.. ...+-.+.+.++..
T Consensus 249 ~~GT~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~------- 319 (371)
T PF00266_consen 249 EGGTPNVPAIYALNEALKLL--EEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGS------- 319 (371)
T ss_dssp SSSS--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTS-------
T ss_pred cccceeeehhhhHHHHHhhh--hccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCC-------
Confidence 122333333334444321 12335666778888888999999887 445433 22233455555442
Q ss_pred hHHHHHHHHHHcCcEEEeCCCCCCC------CCCCEEEEEeecC-CHHHHHHH
Q 046900 381 GELALWDSMLHEVKLNISPGSSCHC------SEPGWFRVCFANM-SEQTLEVA 426 (442)
Q Consensus 381 ~~~~l~~~l~~~~gi~v~pg~~f~~------~~~~~iRls~~~~-~~e~i~~~ 426 (442)
+..++.+.|.++ ||.+..|..+.. ...+.+|+|+... +++|++++
T Consensus 320 ~~~~~~~~L~~~-~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 320 DADDVVKYLEER-GIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp SHHHHHHHHHHH-TEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred CHHHHHHHHhhc-CEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 357788888777 999999876541 1137899999732 78888864
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-18 Score=167.85 Aligned_cols=295 Identities=13% Similarity=0.140 Sum_probs=187.2
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEe
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIH 173 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~ 173 (442)
....++|+++++|++ .++.++++|+++++.+++.++ +++||.|+++.|+|..+...+.. .|++++.++
T Consensus 29 ~~~~~le~~la~~~g----------~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~~-~G~~~~~~~ 97 (380)
T TIGR03588 29 PTVPAFEEALAEYVG----------AKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANCALY-CGAKVDFVD 97 (380)
T ss_pred hhHHHHHHHHHHHHC----------CCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHH-cCCEEEEEe
Confidence 356899999999986 234566778899999999998 78999999999999999888884 899999999
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC-CCCCCc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA-FSSSEF 252 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~-~~~~~~ 252 (442)
++++ ++.+|++.+++.+++. ...++++|+++ |++|...+ +++|.++|+++|++||+|++++... +++...
T Consensus 98 ~~~~-~~~~d~~~l~~~i~~~--~~~~t~~v~~~---~~~G~~~~---~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~ 168 (380)
T TIGR03588 98 IDPD-TGNIDEDALEKKLAAA--KGKLPKAIVPV---DFAGKSVD---MQAIAALAKKHGLKIIEDASHALGAEYGGKPV 168 (380)
T ss_pred cCCC-cCCcCHHHHHHHhhcc--cCCCceEEEEe---CCCCccCC---HHHHHHHHHHcCCEEEEECCCcccCccCCEeC
Confidence 8753 4779999999998731 01267877754 56898776 7888888999999999999998532 333221
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCc--ccCCCCCceeEEEeecCHHHHHHHHHccccC----------------------
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLS--KDLGLPGFRVGTIYSYNDKVVTTARRMSSFT---------------------- 308 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~S--K~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~---------------------- 308 (442)
.+ ... . .+.+.|++ |.++. | ..|+++..++.+.+.++.....+
T Consensus 169 g~-~~~---------~-d~~~~S~~~~K~~~~-~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 235 (380)
T TIGR03588 169 GN-CRY---------A-DATVFSFHPVKIITT-A-EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQE 235 (380)
T ss_pred CC-ccc---------c-ceEEEecCCCCcccc-c-CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeec
Confidence 11 001 1 24566765 88853 3 57888887777776655322111
Q ss_pred -----CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC-C---ceEEE-EEecCCccccc
Q 046900 309 -----LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKG-N---AGLFC-WMNLSPLLEEQ 377 (442)
Q Consensus 309 -----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~---~g~~~-~~~~~~~~~~~ 377 (442)
.++.+.......-|+ .+.+..++-+++.+++.+.|.+. ++....+ . .++++ .+.++.. ..
T Consensus 236 ~g~n~~m~~l~aa~g~~qL~-------~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~- 306 (380)
T TIGR03588 236 LGFNYRMTDIQAALGLSQLK-------KLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQE-FG- 306 (380)
T ss_pred cccccCccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCc-CC-
Confidence 011111111111121 13444445555666777777765 3443222 1 12222 2233221 00
Q ss_pred ChhhHHHHHHHHHHcCcEEEeCCCCC-------C---CC--CC-------CEEEEEee-cCCHHHHHHHHHHHHHHH
Q 046900 378 TREGELALWDSMLHEVKLNISPGSSC-------H---CS--EP-------GWFRVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 378 ~~~~~~~l~~~l~~~~gi~v~pg~~f-------~---~~--~~-------~~iRls~~-~~~~e~i~~~l~~l~~~l 434 (442)
.+..++.+.|.++ ||.++..-.. . .. -+ ..++|.+. .+++++++..++.|++++
T Consensus 307 --~~r~~l~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 307 --CTRKEVFEALRAA-GIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred --CCHHHHHHHHHHC-CCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 1356778887555 9988643210 0 00 01 34777654 458999999999998764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-18 Score=168.18 Aligned_cols=208 Identities=18% Similarity=0.235 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH----hHhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR----DLRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~~G~~v~~v 172 (442)
...|++++|++.+ ....+++++| +.++.+++ .++++||+|++++|.|+.... .+. ..|+++..+
T Consensus 52 ~~~Le~~la~l~g---------~~~al~~~SG-~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~-~~gi~v~~v 119 (380)
T PRK06176 52 RFALEELIADLEG---------GVKGFAFASG-LAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLV-KNGLSCTII 119 (380)
T ss_pred HHHHHHHHHHHhC---------CCCEEEECCH-HHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHH-hcCeEEEEc
Confidence 5788888888865 1233555555 66888776 467999999999999976533 334 378888877
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+. .|++.+++++++ ++++|++++|+||||.+.+ +++|+++|+++++++|+|++|+...+. .
T Consensus 120 d~-------~d~e~l~~ai~~------~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~-~-- 180 (380)
T PRK06176 120 DT-------SDLSQIKKAIKP------NTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQ-N-- 180 (380)
T ss_pred CC-------CCHHHHHHhcCc------CceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccC-C--
Confidence 64 378899988764 7899999999999999988 778888899999999999999864332 1
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHH
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~ 329 (442)
++ .. +..+++.|++|.++.+| .-.|++++.++.+.+.++..... ...++...+.+..-++.
T Consensus 181 -p~-~~---------gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~t----- 244 (380)
T PRK06176 181 -PL-LL---------GADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKT----- 244 (380)
T ss_pred -cc-cc---------CCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccCc-----
Confidence 11 11 22378899999997555 45677777555665555443333 12344444433333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
+..+.++..++...+.+.|++.
T Consensus 245 --l~~R~~~~~~~a~~la~~L~~~ 266 (380)
T PRK06176 245 --LGLRMEAHQKNALCVAEFLEKH 266 (380)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhC
Confidence 1222233334555666667654
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=8e-18 Score=166.30 Aligned_cols=340 Identities=13% Similarity=0.086 Sum_probs=198.1
Q ss_pred ceeeeecccccccHHHHHHHHHhC-CCCcccCCCCCCCCcccccCCCcchHHHHH----HHHHHHHHHhCCCCccCCCcE
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQ-PEASTWGKGAPGFRENALFQDYHGLKSFRQ----AMASFMEQIRGGRAKFDLNRI 123 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~----~ia~~l~~~~~~~~~~~~~~i 123 (442)
..|+|-..+|.+.+.. .+.+... ... .|... .....|....-..+|.+ .++++++ .+..
T Consensus 29 ~~~~l~~sen~~~p~v-~~a~~~~~~~~----~~~g~-~gsr~~~G~~~~~~lE~~~~~~la~l~g----------~~~a 92 (416)
T PRK13034 29 DHLELIASENFTSPAV-MEAQGSVLTNK----YAEGY-PGKRYYGGCEFVDEVEALAIERAKQLFG----------CDYA 92 (416)
T ss_pred cCeeecccccCCCHHH-HHHhcchhhcC----CCCCC-CCCcccCCChHHHHHHHHHHHHHHHHhC----------CCce
Confidence 4578888888875443 3333322 111 11100 00111211223456666 6666654 3345
Q ss_pred -EEecChHHHHHHHHHhhcCCCCeEEEcCCCCcCh-HHhHhhh-cCcEE--EEEecCCCCCCcCCHHHHHHHHHHHHhcC
Q 046900 124 -VVTAGATAANELLTFILADPGDALLVPTPYYPGF-DRDLRWR-TGIKI--VPIHCDSSNNFQITPQALEAAYKEAESKD 198 (442)
Q Consensus 124 -~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~-~~~~~~~-~G~~v--~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 198 (442)
+.+++++.|+..++.+++++||.|+++..+|.+. ...++.. .+... +.++++.. .+.+|++++++.++..
T Consensus 93 lv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~~~le~~l~~~---- 167 (416)
T PRK13034 93 NVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRL-TGLIDYDEVEELAKEH---- 167 (416)
T ss_pred EEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEcccccc-cCCcCHHHHHHHHhhc----
Confidence 4467889999999999999999999999998762 2222210 12211 24444332 4568999999988642
Q ss_pred CceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcc
Q 046900 199 MRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSK 278 (442)
Q Consensus 199 ~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK 278 (442)
++|+|+++.+.+ |...+ +.+|.++|+++|+++|+|++++...+....... .+ ....++++|++|
T Consensus 168 -~~klVi~~~~~~--g~~~d---l~~l~~la~~~g~~livD~Aha~G~~~~g~~~~--~~--------~~~Di~~~s~~K 231 (416)
T PRK13034 168 -KPKLIIAGFSAY--PRELD---FARFREIADEVGALLMVDMAHIAGLVAAGEHPN--PF--------PHAHVVTTTTHK 231 (416)
T ss_pred -CCeEEEECCCcc--ccccC---HHHHHHHHHHcCCEEEEeCcccccCcccCCCCC--CC--------CCceEEEEeCcc
Confidence 567777766554 55555 777788899999999999998864443211110 00 123477899999
Q ss_pred cCCCCCceeEEEeecCHHHHHHHHHccccC--C-CcHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 046900 279 DLGLPGFRVGTIYSYNDKVVTTARRMSSFT--L-ISSQTQYLLA-SMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAG 354 (442)
Q Consensus 279 ~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~--~-~s~~~q~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 354 (442)
.++.+ ..|++++.++.+...++.....+ . ..++...++. +++. .......+.++++.++.+++.+.|.+.|
T Consensus 232 ~l~g~--~GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~---~~~~~~~~~~~~l~~~a~~l~~~L~~~G 306 (416)
T PRK13034 232 TLRGP--RGGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGE---ALQPEFKTYAKQVIANAQALAEVLKERG 306 (416)
T ss_pred cCCCC--CCeEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHH---HhChhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 98323 24888886666665555432221 1 1122222222 2222 1111123457888899999999998889
Q ss_pred CeeecC-CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCC----CCCCCEEEEEeec-----CCHHHHH
Q 046900 355 IECLKG-NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCH----CSEPGWFRVCFAN-----MSEQTLE 424 (442)
Q Consensus 355 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~----~~~~~~iRls~~~-----~~~e~i~ 424 (442)
+++..+ ..+..+++.+..... +...+.+.| +++||.+.+-...+ +..+..+|+++.. .++++++
T Consensus 307 ~~~~~~~~~t~i~~v~~~~~~~-----~~~~~~~~L-~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~ 380 (416)
T PRK13034 307 YDLVSGGTDNHLLLVDLRPKGL-----SGKDAEQAL-ERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFR 380 (416)
T ss_pred CEeccCCCCCcEEEEEcCCCCC-----CHHHHHHHH-HhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHH
Confidence 887642 223355666543211 133444555 55599987421110 1124569998642 3689999
Q ss_pred HHHHHHHHHHHH
Q 046900 425 VALKRIHNFMQK 436 (442)
Q Consensus 425 ~~l~~l~~~l~~ 436 (442)
++++.|.+++.+
T Consensus 381 ~l~~~l~~~~~~ 392 (416)
T PRK13034 381 EIANWILDVLDD 392 (416)
T ss_pred HHHHHHHHHHhc
Confidence 999999988773
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.2e-18 Score=164.28 Aligned_cols=310 Identities=15% Similarity=0.144 Sum_probs=201.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCC-CcEEEecChH-HHHHHHHHhhcC---CCCeEEEcCCCCcChHHhHhhhcCcEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDL-NRIVVTAGAT-AANELLTFILAD---PGDALLVPTPYYPGFDRDLRWRTGIKIVP 171 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~-~~i~~t~G~~-~ai~~~~~~l~~---~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~ 171 (442)
...+.+.+...+.+..| ++. ...++++|+| .++.+++.++-. +||.|+++.-+|.....++.. .|++++.
T Consensus 103 ~~~l~~~~e~~~~~~~G----~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~-~G~~pv~ 177 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLG----LRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAIST-AGFEPRV 177 (444)
T ss_pred HHHHHHHHHHHHHHHcC----CCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHH-cCCeEEE
Confidence 45556666666665555 222 4688888888 688877777642 589999999999999999885 9999999
Q ss_pred Eec-CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 172 IHC-DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 172 v~~-~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
++. .+++.|.+|++.|+++|++. +.+..++++++|+ |+.....+++++|.++|++||+++|+|++|+...
T Consensus 178 Vd~~~d~~~~~iD~e~Le~aIt~~---~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~---- 248 (444)
T TIGR03531 178 IETVLDGDELTTDVEDIERAIEEI---GPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQS---- 248 (444)
T ss_pred eeeeecCcCCCcCHHHHHHHHHhc---cCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcC----
Confidence 995 23457999999999999852 2244566777665 5555556779999999999999999999998411
Q ss_pred CcccHHHHHhhhcCCCCC-cEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHH
Q 046900 251 EFVSIAEILEARQYKDSE-RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~-~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~ 329 (442)
.....+... +. ..+ -.+++.|++|.+.+||+ .|.++++++.+.+.+.........+++.|.+...++.-+ .
T Consensus 249 --~~~~~~~~~-g~-~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~~G---~ 320 (444)
T TIGR03531 249 --NKYMELINK-AI-KVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLSLG---S 320 (444)
T ss_pred --hhhhhhhhc-cc-cccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHHhC---H
Confidence 111112110 00 011 14567899999987776 344446677777777654333334456777777766532 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC----CCeeecC-CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEE----EeCC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSA----GIECLKG-NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLN----ISPG 400 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~----v~pg 400 (442)
+.++++.++..++++++.+.|.+. |.++... ....-+.+.+..... .+...+-..|..+ +|. |.||
T Consensus 321 ~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~~----~~~~~~g~~l~~~-~v~g~r~v~~~ 395 (444)
T TIGR03531 321 KGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLKG----KDPTMLGSMLYSR-RVTGPRVVTNG 395 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEecccccc----cCHHHHHHHHHhC-CCCCceeecCC
Confidence 557778888888888888888764 6666543 333334444443211 1245555555544 552 4466
Q ss_pred C-------CC---CCCCC----CEEEEEee-cCCHHHHHHHHHHHHHH
Q 046900 401 S-------SC---HCSEP----GWFRVCFA-NMSEQTLEVALKRIHNF 433 (442)
Q Consensus 401 ~-------~f---~~~~~----~~iRls~~-~~~~e~i~~~l~~l~~~ 433 (442)
. .| +...+ .|+-++.+ .++++|++.++++|.++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 396 DSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred CceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 5 22 21111 24444333 34899999999999875
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-18 Score=168.46 Aligned_cols=275 Identities=13% Similarity=0.106 Sum_probs=177.3
Q ss_pred cCCCcEEEecChHHHHHHHHHhhcCCC---CeEEEcCCCCcChHH----hHhhhcCcEE----EEEecCCCCCCcCCHHH
Q 046900 118 FDLNRIVVTAGATAANELLTFILADPG---DALLVPTPYYPGFDR----DLRWRTGIKI----VPIHCDSSNNFQITPQA 186 (442)
Q Consensus 118 ~~~~~i~~t~G~~~ai~~~~~~l~~~g---d~Vl~~~p~y~~~~~----~~~~~~G~~v----~~v~~~~~~~~~~d~~~ 186 (442)
+++++|++|+|+++++..++.++++++ +.|++....|+.... .++ ..|+++ +.++.+. ++.+|++.
T Consensus 84 ~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~-~~g~~~~~~~~~~~~~~--~g~~~~~~ 160 (406)
T TIGR01814 84 AKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQ-LHGLTVEESMVQIEPRE--EETLRLED 160 (406)
T ss_pred CCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHH-hcCCCcccceEEeccCC--CCccCHHH
Confidence 678999999999999999999886664 368888889987333 234 368887 4555443 34578899
Q ss_pred HHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCC
Q 046900 187 LEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKD 266 (442)
Q Consensus 187 l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~ 266 (442)
+++.++.. +.++++|+++.++|.||.+++ +++|.++|+++|+++++|++++. |.....+...
T Consensus 161 l~~~~~~~---~~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~----G~~~id~~~~-------- 222 (406)
T TIGR01814 161 ILDTIEKN---GDDIAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAV----GNVPLDLHDW-------- 222 (406)
T ss_pred HHHHHHhc---CCCeEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEccccc----CCcccccccC--------
Confidence 99888632 247899999999999999998 78888899999999999999984 2212222222
Q ss_pred CCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHHHcc------------------------ccCCCcHHHHHHHHHH
Q 046900 267 SERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARRMS------------------------SFTLISSQTQYLLASM 321 (442)
Q Consensus 267 ~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~~~------------------------~~~~~s~~~q~~~~~~ 321 (442)
+.-+++.|.+|.++ .|| .|..+. ++.......... ..++.+.+.-.++.+.
T Consensus 223 -gvD~~~~s~hK~l~g~pG--~~l~v~-~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~a 298 (406)
T TIGR01814 223 -GVDFACWCTYKYLNAGPG--AGAFVH-EKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGS 298 (406)
T ss_pred -CCCEEEEcCccccCCCCC--eEEEEe-hhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHH
Confidence 33478899999873 345 343333 332221100000 0122233333333333
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeeecCC----ceEEEEEecCCcccccChhhHHHHHHHHHHc
Q 046900 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-----GIECLKGN----AGLFCWMNLSPLLEEQTREGELALWDSMLHE 392 (442)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 392 (442)
++-.. +.-++..+++.++..+++.+.|.+. |+++..+. .+..+.+.++. +..++.+.|.++
T Consensus 299 l~~~~--~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~~--------~~~~~~~~L~~~ 368 (406)
T TIGR01814 299 LDIFD--QAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHPV--------PGKAVFQALIKR 368 (406)
T ss_pred HHHHH--hcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEecC--------CHHHHHHHHHHC
Confidence 33110 1124556677777777888887663 36665542 12244555551 145777888665
Q ss_pred CcEEEeCCCCCCCCCCCEEEEEe-e-cCCHHHHHHHHHHHHHHH
Q 046900 393 VKLNISPGSSCHCSEPGWFRVCF-A-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 393 ~gi~v~pg~~f~~~~~~~iRls~-~-~~~~e~i~~~l~~l~~~l 434 (442)
||.+... .++.+|+|+ . .-++++++++++.|++++
T Consensus 369 -gi~v~~~------~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 369 -GVIGDKR------EPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred -CEEEecc------CCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 9987531 236899998 3 338999999999998764
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.6e-18 Score=161.90 Aligned_cols=322 Identities=17% Similarity=0.199 Sum_probs=214.6
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh-HhhhcCcE
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD-LRWRTGIK 168 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~-~~~~~G~~ 168 (442)
.|.....+.+|.++++++++ .+.++.|++++.|+.+++..+++|||.| +.++|...... +. ..|+.
T Consensus 66 ~yag~~s~~~lE~~va~~~G----------~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe-~~Gav 132 (450)
T TIGR02618 66 AYAGSRNFYHLERTVRELYG----------FKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQE-KNGAT 132 (450)
T ss_pred hhcCCCcHHHHHHHHHHHHC----------CCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHH-hCCeE
Confidence 48777788999999999986 5579999999999998887889999977 66777444443 56 48887
Q ss_pred EEEEecCC--------CCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCC-CCcCCCHHHHHHHHHHHHhcCcEEEEe
Q 046900 169 IVPIHCDS--------SNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP-LGATIQRSVLEELLDFATRKNIHLVSD 239 (442)
Q Consensus 169 v~~v~~~~--------~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NP-tG~~~~~~~l~~l~~~~~~~~~~vi~D 239 (442)
++.++.++ ..++.+|++.|++.+++.. ..+++++.+.+++|- .|.++|.++++++.++|++||+.||+|
T Consensus 133 ~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~--~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~D 210 (450)
T TIGR02618 133 FVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVG--ADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYD 210 (450)
T ss_pred EEeeecccccccccCCCCCCCcCHHHHHHHhcccc--CcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEE
Confidence 77775542 2346789999999997521 124567889999885 589999999999999999999999999
Q ss_pred ccCCc-CC-C-----CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc------
Q 046900 240 EIYSG-SA-F-----SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS------ 306 (442)
Q Consensus 240 e~y~~-~~-~-----~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~------ 306 (442)
.+... .. | .+....++.++..++. .+-. .++.|..|.++.+- .|+++..++.+.+.+++...
T Consensus 211 aAR~~gNA~~I~~re~g~~~~~i~ei~~e~~--~~aD-~~~~S~~Kd~~~~~--GG~l~~~d~~l~~k~r~~~~~~eG~~ 285 (450)
T TIGR02618 211 ATRCVENAYFIKEREQGYEDKSIAEILKEMM--SYAD-GCTMSGKKDCLVNI--GGFLCMNDDEMFQSAKELVVVFEGMP 285 (450)
T ss_pred ccchhhChhhhhcccccccCCCHHHHHHHHh--ccCc-EEEEeeccCCCCCC--ceEEEeCCHHHHHHHHHHhhhcCCcc
Confidence 99764 11 1 1122345544443310 0112 36789999887661 27777678888877765422
Q ss_pred -cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCccccc--ChhhHH
Q 046900 307 -FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQ--TREGEL 383 (442)
Q Consensus 307 -~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~ 383 (442)
++.++.-...+++-.|... ....++++ -....++|.+.|.+.|+.+..|.+|.-++++....+..- ....+.
T Consensus 286 tyGgla~r~~~ala~gL~e~-~~~~y~~~----r~~~a~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lph~~~~~~p~~ 360 (450)
T TIGR02618 286 SYGGLAGRDMEAMAIGIREA-VDYEYIEH----RVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFLPHIPQDQFPAQ 360 (450)
T ss_pred ccCchhhhhHHHHHHHHHHh-hhHHHHHH----HHHHHHHHHHHHHHCCCcccCCCCcceEEEEhHHhCCCCChhhChHH
Confidence 2222322222222222221 00122222 222357888999888999988888889999876532211 112478
Q ss_pred HHHHHHHHcCcEEEe-CCCCCCCCC----------CCEEEEEee--cCCHHHHHHHHHHHHHHHHH
Q 046900 384 ALWDSMLHEVKLNIS-PGSSCHCSE----------PGWFRVCFA--NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 384 ~l~~~l~~~~gi~v~-pg~~f~~~~----------~~~iRls~~--~~~~e~i~~~l~~l~~~l~~ 436 (442)
.++.+|..+.||--. -|+...... -..+||++. .-+.+.++...++|..+.++
T Consensus 361 al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 426 (450)
T TIGR02618 361 SLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKH 426 (450)
T ss_pred HHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 889999888888643 343321111 146999986 22788899999988887665
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-17 Score=161.14 Aligned_cols=359 Identities=12% Similarity=0.065 Sum_probs=207.0
Q ss_pred CCCCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|..+...+.+||+..+. ..+ .++.+.+.+.+..... ..+.......+....+|+.+.+...
T Consensus 32 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l------------~~~~~~~~~~~~~~~la~~l~~~~p-- 97 (425)
T PRK07495 32 AEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRF------------THTCHQVVPYENYVRLAERLNALVP-- 97 (425)
T ss_pred cEEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhc------------cCcccCccCCHHHHHHHHHHHHhCC--
Confidence 444455567788986553 223 3355555555443210 0010101123445556666665321
Q ss_pred CccC-CCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCc-------------EEEEEecCCCCC
Q 046900 116 AKFD-LNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGI-------------KIVPIHCDSSNN 179 (442)
Q Consensus 116 ~~~~-~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~-------------~v~~v~~~~~~~ 179 (442)
-. .+.++++++++++++.+++... .....|+...-+|.+.........|. .++.+|.+...
T Consensus 98 --~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 174 (425)
T PRK07495 98 --GDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL- 174 (425)
T ss_pred --CCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccc-
Confidence 11 2589999999999999877542 22357888888887653221100110 22333322110
Q ss_pred CcCC----HHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 180 FQIT----PQALEAAYKEAESKDMRVRGVLITNP-SNPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 180 ~~~d----~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
...+ .+.+++.+.+.. .+.++.+|++... +| +|. .+|.+.+++|.++|++||+++|+||+|..+...+..+
T Consensus 175 ~g~~~~~~~~~l~~~~~~~~-~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~- 251 (425)
T PRK07495 175 HGVSVEQSLAALDKLFKADV-DPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLF- 251 (425)
T ss_pred ccccHHHHHHHHHHHHHhcc-CCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCce-
Confidence 0122 334455554210 1235665555432 45 784 5788999999999999999999999999876555321
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhc---CchhH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLS---NKKFT 328 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~---~~~~~ 328 (442)
.. .. .+.+..+.+|||.++ +|+|+|++++ ++.+.+.+.. ....+..++++++++.+.++ +.+.
T Consensus 252 a~---~~------~gv~pDi~tlsK~l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l- 319 (425)
T PRK07495 252 AM---EH------HEVAADLTTMAKGLA-GGFPLAAVTG-RAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDL- 319 (425)
T ss_pred ee---cc------cCCCCCEEeehhhhc-CCccceEEEE-cHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchH-
Confidence 11 11 133445789999998 9999999999 5566655543 22335678888885555544 3332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCccc-ccChhhHHHHHHHHHHcCcEEEeCCCCCCCCC
Q 046900 329 ENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLE-EQTREGELALWDSMLHEVKLNISPGSSCHCSE 407 (442)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~ 407 (442)
.++++++.+.++++.+.+.+.+ ........-|+++|+++..... .........+...++++ |+++.+... .
T Consensus 320 ~~~~~~~g~~l~~~L~~l~~~~---~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~g~----~ 391 (425)
T PRK07495 320 CERANQLGNRLKQRLASLRETV---PEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALEK-GLILLTCGV----H 391 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhhC---CCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHHHHC-CeEEeecCC----C
Confidence 3344444555544444433322 2111112337899999854211 01111245677777776 999876321 1
Q ss_pred CCEEEEEee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 408 PGWFRVCFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 408 ~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
.+.+|+... .++++++++++++|.+++++.+
T Consensus 392 ~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 392 GNVIRFLAPITIQDDVFAEALDILEASILEAS 423 (425)
T ss_pred CCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 367999876 5599999999999999998765
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-17 Score=161.29 Aligned_cols=350 Identities=11% Similarity=0.095 Sum_probs=214.0
Q ss_pred CceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEec
Q 046900 48 SGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA 127 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~ 127 (442)
...|+|-..||..++.. ...+....... +.+| +.....|+......++.....+...+.++ .+.-||-.-+
T Consensus 49 ~~~l~LiasEN~~s~~v-~~a~~s~l~nk-yaeg---~pg~ryy~g~~~~d~ie~l~~~ra~~lf~----a~~anvqp~S 119 (493)
T PRK13580 49 RSSLKLIASENYSSLAV-QLAMGNLLTDK-YAEG---TPGHRFYAGCQNVDTVEWEAAEHAKELFG----AEHAYVQPHS 119 (493)
T ss_pred hcCceEecccccCCHHH-HHHhccccccc-CcCC---CCCccccCCCchHHHHHHHHHHHHHHHhC----CCcccccCCC
Confidence 34578888888776433 22222211110 0011 11223355556667777777777777766 4556777777
Q ss_pred ChHHHHHHHHHhhcCC-------------------------------CCeEEEcCCCCcChHH-----hHhhhcCcEEEE
Q 046900 128 GATAANELLTFILADP-------------------------------GDALLVPTPYYPGFDR-----DLRWRTGIKIVP 171 (442)
Q Consensus 128 G~~~ai~~~~~~l~~~-------------------------------gd~Vl~~~p~y~~~~~-----~~~~~~G~~v~~ 171 (442)
| +.|+..++.+|++| ||+|+..++...++.. .+. ....++..
T Consensus 120 g-~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~-~~~~~~~~ 197 (493)
T PRK13580 120 G-ADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNIS-GKMFHQRS 197 (493)
T ss_pred c-HHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchh-hheeeeEe
Confidence 6 45677778888876 8999988776654422 111 12356667
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
++++.+ ...+|.+++++.+++ +++.|+++..+|=++ ..+ +++|.++|+++|+++++|++|+...+++..
T Consensus 198 y~vd~~-~g~iD~d~l~~~~~~------~~plvii~g~S~~~~-~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~ 266 (493)
T PRK13580 198 YGVDPD-TGLLDYDEIAALARE------FKPLILVAGYSAYPR-RVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKV 266 (493)
T ss_pred cccCcc-cCccCHHHHHHHHhh------cCCEEEEeCccccCC-CcC---HHHHHHHHHHcCCEEEEECchhhceecccc
Confidence 777643 346999999999986 667788887766544 666 778888888999999999999976655332
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHH
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~ 329 (442)
... ...+. ...-++++|++|++ .|-+.|++++ ++.+.+.+.+..++ ++..++...+++..+. +...
T Consensus 267 ~~~--~~~~~-----~~~D~vtgT~hKaL--~GP~GG~I~~-~~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~--e~~~ 334 (493)
T PRK13580 267 FTG--DEDPV-----PHADIVTTTTHKTL--RGPRGGLVLA-KKEYADAVDKGCPLVLGGPLPHVMAAKAVALA--EART 334 (493)
T ss_pred chh--hcCCC-----CCCcEEEeCChhhc--cCCCeEEEEe-cHHHHHHHhhCCCcccCCCccHHHHHHHHHHH--HHhC
Confidence 110 00000 12337789999988 3344699998 56666666544333 2222222222222222 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeeecC-CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC-CC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSAGIECLKG-NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC-SE 407 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~-~~ 407 (442)
...+..++++.++.+.|.+.|.+.|+++... ..+-.+++.+.+.. .....+.+.+++.||.+.+-..... .+
T Consensus 335 ~ef~~y~~~l~~Na~~La~~L~~~G~~vv~ggTdshIV~V~lg~~~------~~g~~a~~~L~e~GI~vn~i~~Ptvp~g 408 (493)
T PRK13580 335 PEFQKYAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFG------LTGRQAESALLDAGIVTNRNSIPSDPNG 408 (493)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEEEeCCHH------HHHHHHHHHHHHCCeEEccccCCCCCCC
Confidence 1124567888999999999999999987531 22346777776531 1233344444556999975332221 12
Q ss_pred ---CCEEEEEeec-----CCHHHHHHHHHHHHHHHHHH
Q 046900 408 ---PGWFRVCFAN-----MSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 408 ---~~~iRls~~~-----~~~e~i~~~l~~l~~~l~~~ 437 (442)
+..|||++.. +++++++++++.|.++++..
T Consensus 409 ~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 409 AWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred CCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 4569999753 35799999999999888753
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-17 Score=153.78 Aligned_cols=345 Identities=16% Similarity=0.147 Sum_probs=219.5
Q ss_pred CCCCCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCC
Q 046900 41 YEESTNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRA 116 (442)
Q Consensus 41 ~~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 116 (442)
|.-+.+....|||..+ .|.++ ++.+.+.++++.+.... ....| +.+.+.++|+.+.+..
T Consensus 35 ~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h--------~sn~~-----~~~~~~~la~~L~~~s---- 97 (404)
T COG4992 35 YVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWH--------VSNLF-----YNEPQAELAEKLVELS---- 97 (404)
T ss_pred EEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhh--------ccccc-----CChHHHHHHHHHHhhC----
Confidence 3345677888998654 45553 46666666654321100 01112 2455667777776531
Q ss_pred ccCCCcEEEecChHHHHHHHHHhhcC----C-CCeEEEcCCCCcChHHhHhhhcCcEE--E--EEecCCCC---CCcCCH
Q 046900 117 KFDLNRIVVTAGATAANELLTFILAD----P-GDALLVPTPYYPGFDRDLRWRTGIKI--V--PIHCDSSN---NFQITP 184 (442)
Q Consensus 117 ~~~~~~i~~t~G~~~ai~~~~~~l~~----~-gd~Vl~~~p~y~~~~~~~~~~~G~~v--~--~v~~~~~~---~~~~d~ 184 (442)
+ ..+.|+++|+++||++.+++.-.. + ..+|+...-+|.+-....- +.+.+. . .-|+.+.- .|. |+
T Consensus 98 ~-~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~gal-S~t~~~ky~~~F~Pl~~g~~~vpfn-Di 174 (404)
T COG4992 98 P-FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGAL-SATGQPKYRKGFGPLLPGFRHVPFN-DI 174 (404)
T ss_pred c-cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceee-eccCChhhccCCCCCCCCceecCCC-CH
Confidence 1 378999999999999999876522 1 2367777666654221111 111111 0 00111100 122 78
Q ss_pred HHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHH-HHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhc
Q 046900 185 QALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSV-LEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQ 263 (442)
Q Consensus 185 ~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~-l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~ 263 (442)
+++++++.+ ++.+|++..-+--.|++.+.++ ++++.++|++||+++|.||+...+..+|+- ......
T Consensus 175 ~al~~ai~~------~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~----fA~e~~-- 242 (404)
T COG4992 175 EALEAAIDE------DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKL----FAYEHY-- 242 (404)
T ss_pred HHHHHHhcc------CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchH----HHHHHh--
Confidence 999999986 8888888766888998765555 999999999999999999999987766642 222221
Q ss_pred CCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHH--HccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 046900 264 YKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTAR--RMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQK 341 (442)
Q Consensus 264 ~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~--~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 341 (442)
+..--+-++.|++| .|+.+|.+++. +.+...+. ...+.++.++++.+++.+.++-.. -+...+..++
T Consensus 243 ----gV~PDI~tlaK~Lg-GG~PigA~la~-~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~-----~e~ll~~v~~ 311 (404)
T COG4992 243 ----GVEPDILTLAKALG-GGFPIGAMLAT-EEIASAFTPGDHGSTFGGNPLACAVALAVLEVLL-----EEGLLENVRE 311 (404)
T ss_pred ----CCCCCEEEeecccc-CCccceeeEEc-hhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHc-----chhHHHHHHH
Confidence 11111346889998 99999999994 55555443 234445678888887777665321 1223344455
Q ss_pred HHHHHHHHHHhC----CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-
Q 046900 342 RYQMIIEGLRSA----GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA- 416 (442)
Q Consensus 342 ~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~- 416 (442)
.-++|.+.|+++ ++-...-.-|+++-+++.... .+.++...+.++ |+++.+. ++..+|+...
T Consensus 312 ~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~------~a~~~~~~~~~~-gvL~~~a------~~~ViR~~PpL 378 (404)
T COG4992 312 KGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPY------RARDIVRALREE-GVLVLPA------GPNVIRFLPPL 378 (404)
T ss_pred HHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCcc------cHHHHHHHHHHC-CeEEecC------CCCeEEecCCc
Confidence 556666666654 211122355788888887632 156788888777 9999873 3458999887
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhc
Q 046900 417 NMSEQTLEVALKRIHNFMQKRERRR 441 (442)
Q Consensus 417 ~~~~e~i~~~l~~l~~~l~~~~~~~ 441 (442)
.++++++++++++|.+++.+...+.
T Consensus 379 ~i~~eei~~~~~~l~~~l~~~~~~~ 403 (404)
T COG4992 379 VITEEEIDEALDALERALAAASARV 403 (404)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhhcc
Confidence 5599999999999999999876653
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-17 Score=163.41 Aligned_cols=155 Identities=23% Similarity=0.326 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH----hHhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR----DLRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~~G~~v~~v 172 (442)
...|++.+|++.+ .+..++++++++++.+++.+++++||+|+++.+.|..... .+. ..|++++.+
T Consensus 65 ~~~le~~lA~l~g----------~~~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~-~~G~~v~~v 133 (427)
T PRK05994 65 NAVLEERVAALEG----------GTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFK-SFGWQVRWA 133 (427)
T ss_pred HHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHH-hcCcEEEEE
Confidence 4677888888764 3357888889999999999999999999999999986433 345 389999888
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+.+ |++.+++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+.... .
T Consensus 134 d~~-------d~~~l~~ai~~------~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~----~ 193 (427)
T PRK05994 134 DAD-------DPASFERAITP------RTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYL----I 193 (427)
T ss_pred CCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCcccccc----C
Confidence 742 68889988864 7899999999999999998 77888899999999999999974221 1
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEee
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYS 292 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~ 292 (442)
.++ .+ +--+++.|++|.+|-+|-.+|.+++
T Consensus 194 ~pl-~~---------gaDivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 194 RPI-EH---------GADIVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred Ccc-cc---------CCcEEEEcCccccCCCCCcEEEEEE
Confidence 111 12 2237889999999866756665554
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7e-17 Score=160.90 Aligned_cols=357 Identities=13% Similarity=0.094 Sum_probs=202.3
Q ss_pred CCCCCceeeeecc--cccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLA--ENQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+||+..+ .+.+ .++.+.+.+.+..+..... ....| ..+....+++.+.+... -.
T Consensus 39 d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~-------~~~~~-----~~~~~~~la~~L~~~~~----~~ 102 (433)
T PRK08117 39 GVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHG-------PSGVI-----YYESILKLAEELAEITP----GG 102 (433)
T ss_pred eCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCc-------ccccc-----CCHHHHHHHHHHHHhCC----CC
Confidence 3445678898765 2333 3355555555443211000 00011 12444455555554321 12
Q ss_pred CCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcC--c-----------EEEEEecCCCC--CCc-
Q 046900 120 LNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTG--I-----------KIVPIHCDSSN--NFQ- 181 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G--~-----------~v~~v~~~~~~--~~~- 181 (442)
.+.+++++++++|+..+++... .....|+...-+|.+.........+ . .+..+|..... .+.
T Consensus 103 ~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (433)
T PRK08117 103 LDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGE 182 (433)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccC
Confidence 3579999999999999887531 1235677777777664432210011 0 11222221100 000
Q ss_pred -------CCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 182 -------ITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 182 -------~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
-|++.+++.+++.. .+.++.+|++..-....|.+. +.+.+++|.++|++||+++|+||+|..+...+..+.
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~ 261 (433)
T PRK08117 183 DPEVCFLECLRDLESLFKHQV-TPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFA 261 (433)
T ss_pred chhHHHHHHHHHHHHHHHhcc-CCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchh
Confidence 14556666665311 123455555544356667764 677899999999999999999999998665554221
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc--cccCCCcHHHHHHHHHHhcCchhHHHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM--SSFTLISSQTQYLLASMLSNKKFTENY 331 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~ 331 (442)
. ..+ +...-+.+|||++| +|+++|++++ ++.+.+.+... ...+..+++++.++.+.|+... .
T Consensus 262 ~-~~~---------gv~pDi~t~sK~lg-~G~pigav~~-~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~--~-- 325 (433)
T PRK08117 262 A-QTF---------GVVPDIMTIAKGIA-SGLPLSAVVA-SKELMEQWPLGSHGTTFGGNPVACAAALATLEVIK--E-- 325 (433)
T ss_pred H-hhc---------CCCCCEeehhhhcc-CCCcceeEEE-cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH--h--
Confidence 1 111 11122469999999 9999999998 56666555321 2224567888888887776321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----CCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCC
Q 046900 332 IKTNRERLQKRYQMIIEGLRS----AGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSE 407 (442)
Q Consensus 332 ~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~ 407 (442)
....+.+++..+++.+.|++ +++.......|+++++++..............+...++++ ||.+.+.. ..
T Consensus 326 -~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~g----~~ 399 (433)
T PRK08117 326 -EKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEK-GLLFYLCG----NA 399 (433)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHC-CCEEeecC----CC
Confidence 11223333334444444433 2332334556677788775321111112345667777666 99987632 12
Q ss_pred CCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 408 PGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 408 ~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
..++|++++ .++++++++++++|.+++++..+
T Consensus 400 ~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~ 432 (433)
T PRK08117 400 GNVLRMIPPLTVTKEEIDEGLDILDEALTEYEA 432 (433)
T ss_pred CCEEEEeCCccCCHHHHHHHHHHHHHHHHHHhc
Confidence 468999964 44999999999999999987643
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-17 Score=152.44 Aligned_cols=330 Identities=15% Similarity=0.145 Sum_probs=201.8
Q ss_pred eeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChH
Q 046900 51 IQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGAT 130 (442)
Q Consensus 51 i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~ 130 (442)
++|.+..-.-+.+.+.+.+.+... .....|+ ..+.-+++.+++.+.++ ...++++.++|
T Consensus 2 ~~f~SDn~~g~~~~m~eam~~a~~-----------~~~~~YG----~D~~~~~~e~~~ae~~g------~~a~~Fv~sGT 60 (342)
T COG2008 2 IDFRSDNVAGPTPEMREALAAANA-----------VGDDVYG----EDPTTNALEQRIAELFG------KEAALFVPSGT 60 (342)
T ss_pred CccccCccCCCCHHHHHHHHhccc-----------cCCCCCC----CCHHHHHHHHHHHHHhC------CceEEEecCcc
Confidence 345544433445666666665531 0123454 44555666666665544 37899999999
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCCcChHHh--HhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeC
Q 046900 131 AANELLTFILADPGDALLVPTPYYPGFDRD--LRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITN 208 (442)
Q Consensus 131 ~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~--~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~ 208 (442)
+++.+++.+.++||+.|++..-.|-...+. .....|.. +++..+..+-.+++++++..++...-....+.++++.|
T Consensus 61 ~aN~lal~~~~~~~~~vi~~~~aHi~~~E~Ga~~~~~~~~--~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~ 138 (342)
T COG2008 61 QANQLALAAHCQPGESVICHETAHIYTDECGAPEFFGGGQ--KLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLEN 138 (342)
T ss_pred HHHHHHHHHhcCCCCeEEEeccccceecccCcHHHHcCCc--eeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEee
Confidence 999999999999999999998887554322 22112222 33333333346899999998875211234556677777
Q ss_pred CCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc--CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 209 PSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG--SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 209 P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~--~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
++|-.|.++|.+++++|.++|+++++.+..|.+-.. .+..+ ++...+... -. .+.-++||..+.|
T Consensus 139 ~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg---~~~~~~~~~------~D-~v~~~~tK~g~~~--- 205 (342)
T COG2008 139 TATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALG---VALKTIKSY------VD-SVSFCLTKGGGAP--- 205 (342)
T ss_pred ccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC---CCHHHHHhh------CC-EEEEecccCCcce---
Confidence 777889999999999999999999999999998331 22222 344444332 22 3345789988755
Q ss_pred eEEEeecCHHHHHHHHHcccc-C---CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC
Q 046900 287 VGTIYSYNDKVVTTARRMSSF-T---LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGN 361 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~~~~-~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 361 (442)
+|.|+..+..+.+.++..+.. + .-+.+..+....+|++.-|. ...+.-.+....|.+.|... |+++..|.
T Consensus 206 ~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~-----~~~~Han~mA~~La~~~~~~~G~~~~~~~ 280 (342)
T COG2008 206 VGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWR-----LAADHANAMAARLAEGLEAKPGVKLAFPV 280 (342)
T ss_pred eeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHH-----HHHHHHHHHHHHHHHhhhhcCCceeccCC
Confidence 488887787777665433222 1 12233334444555554331 11112222356777888854 99987754
Q ss_pred ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHH
Q 046900 362 AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 362 ~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l 434 (442)
-.+.++++++.... +.......+.+. |+.+.+++ ..+|+.++ ..+++++++++..+++++
T Consensus 281 ~tN~vf~~l~~~~i-----~~l~~~~~~~~~-~~~~~~~~-------~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 281 ETNMVFVRLPESAI-----EALRLAGALFYR-GVLIGAHG-------EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred cccEEEEECChHHH-----HHHHhhchhhee-eeeccCCC-------ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 44588888886311 122222222222 55544322 35898876 338999999999988764
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.4e-17 Score=160.21 Aligned_cols=355 Identities=13% Similarity=0.076 Sum_probs=204.7
Q ss_pred CCCCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|..+.....+||+..+. ..+ .++.+.+.+.+..... ..........+.+..+|+.+.+....+
T Consensus 27 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~------------~~~~~~~~~~~~~~~lae~l~~~~~~~ 94 (412)
T TIGR02407 27 STLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADD------------GIIHSLDMATEAKREFLETFNEIILKP 94 (412)
T ss_pred CEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhc------------cceeccccCcHHHHHHHHHHHHhccCc
Confidence 344445567788986553 223 3455555555443210 000001112355556666665431000
Q ss_pred CccCCCcEEE-ecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhhcCc------------EEEEEecCCCCCC
Q 046900 116 AKFDLNRIVV-TAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCDSSNNF 180 (442)
Q Consensus 116 ~~~~~~~i~~-t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~~~~~~ 180 (442)
... .+.+++ +++++++++.+++.... ...+|+...-+|.+....+....|. .++.+|.......
T Consensus 95 ~~~-~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 173 (412)
T TIGR02407 95 RGL-DYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGG 173 (412)
T ss_pred cCC-CceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCcccc
Confidence 001 124655 58999999988876532 3367888888887765332211221 2233332110000
Q ss_pred -cCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc-HHH
Q 046900 181 -QITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS-IAE 257 (442)
Q Consensus 181 -~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s-~~~ 257 (442)
.-+++.+++.+.+......++.+|++..-.++.|. +.+.+.+++|.++|++||+++|+||++..+...|..+.. ...
T Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~ 253 (412)
T TIGR02407 174 DVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAG 253 (412)
T ss_pred chhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccC
Confidence 01366677777543211124566665544788898 568888999999999999999999999875444432110 011
Q ss_pred HHhhhcCCCCCcEEEEecCcccCCCC-CceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHH---HH-HhcCchhHHH
Q 046900 258 ILEARQYKDSERVHIVYSLSKDLGLP-GFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLL---AS-MLSNKKFTEN 330 (442)
Q Consensus 258 ~~~~~~~~~~~~vi~~~S~SK~~g~~-G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~---~~-~l~~~~~~~~ 330 (442)
+. ++ +.++||.+| + |+|+|++++++ .+ ..+.. ....+..++++..++ .. ++.++++ .+
T Consensus 254 v~-------PD----i~~~~K~lg-~~G~pigav~~~~-~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l-~~ 318 (412)
T TIGR02407 254 IE-------PD----IVCLSKSIS-GYGLPLALTLIKP-EL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAF-EK 318 (412)
T ss_pred CC-------CC----EEEechhcc-CCccceeEEEEch-hh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHH-HH
Confidence 11 22 336899998 7 99999999954 44 33321 122234455533332 23 3444433 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCE
Q 046900 331 YIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGW 410 (442)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~ 410 (442)
+++++.+.++++.+.+.+.+.. +.......|+++|++++... ....+...++++ ||.+.+... ....
T Consensus 319 ~~~~~g~~l~~~l~~l~~~~~~--~~~~vrg~Gl~~~l~l~~~~------~~~~~~~~~~~~-Gv~v~~~~~----~~~~ 385 (412)
T TIGR02407 319 AVQRKSEIIQERLDRIVAEYPE--LIKQVRGRGLMQGIECGDGD------LAGKIAKAAFEN-GLIIETSGP----NDEV 385 (412)
T ss_pred HHHHHHHHHHHHHHHHHhhCCC--ceEeeecceeEEEEEecChH------HHHHHHHHHHHC-CCEEeccCC----CCCE
Confidence 5666666666655555444421 23444567899999997531 256778888776 999987432 2357
Q ss_pred EEEEee-cCCHHHHHHHHHHHHHHHH
Q 046900 411 FRVCFA-NMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 411 iRls~~-~~~~e~i~~~l~~l~~~l~ 435 (442)
+|++.+ .++++++++++++|.+++.
T Consensus 386 lr~~p~l~~t~~~i~~~~~~l~~~l~ 411 (412)
T TIGR02407 386 IKLLPPLTIDEETLQQGLDILEQAVE 411 (412)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 999886 4599999999999999875
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-17 Score=161.92 Aligned_cols=284 Identities=13% Similarity=0.112 Sum_probs=176.2
Q ss_pred cCCCcEEEe---cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---------hcCcEEEEEecCCCCCCcCCHH
Q 046900 118 FDLNRIVVT---AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---------RTGIKIVPIHCDSSNNFQITPQ 185 (442)
Q Consensus 118 ~~~~~i~~t---~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---------~~G~~v~~v~~~~~~~~~~d~~ 185 (442)
++++++.++ +|+++++..++.+|+++||+|++....|......... ..+.++..++++.+ ..+|++
T Consensus 95 a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~--g~id~~ 172 (452)
T PTZ00094 95 LDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEK--GLIDYD 172 (452)
T ss_pred CCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCC--CCcCHH
Confidence 567777666 7889999999999999999999988777665443210 01234455556543 468999
Q ss_pred HHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc-cHHHHHhhhcC
Q 046900 186 ALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV-SIAEILEARQY 264 (442)
Q Consensus 186 ~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~-s~~~~~~~~~~ 264 (442)
+|++.+++. +++++++. ++.+|...+ +++|.++|+++|+++++|++++.......... ++
T Consensus 173 ~L~~~l~~~-----~~~lvi~~--~s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~--------- 233 (452)
T PTZ00094 173 KLEELAKAF-----RPKLIIAG--ASAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPF--------- 233 (452)
T ss_pred HHHHHHHHh-----CCCEEEEe--CCCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCCCCC---------
Confidence 999999752 55666553 334898888 66777888899999999999985443321111 11
Q ss_pred CCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHH-Hc---ccc---CCCcHHHHHHHHHHhcCchhH-HHHHHHHH
Q 046900 265 KDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTAR-RM---SSF---TLISSQTQYLLASMLSNKKFT-ENYIKTNR 336 (442)
Q Consensus 265 ~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~-~~---~~~---~~~s~~~q~~~~~~l~~~~~~-~~~~~~~~ 336 (442)
.+.-+++.|.+|+++ |.+.|++++.+. +.+.+. .. ..+ ++.+.....++...++ +. ....++.+
T Consensus 234 --~~~D~l~~S~hK~l~--GP~Gg~l~~~~~-~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~---~~~~~~~~~~~ 305 (452)
T PTZ00094 234 --PYADVVTTTTHKSLR--GPRSGLIFYRKK-VKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLK---EVQSPEWKEYA 305 (452)
T ss_pred --CCCcEEEcCCccCCC--CCCceEEEEecc-cchHHHHhhccccCCCCCCCchHHHHHHHHHHHH---HHhChhHHHHH
Confidence 022377899999872 333588887443 322211 11 111 1223333333333333 22 12345667
Q ss_pred HHHHHHHHHHHHHHHhCCCeeecCCc-eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe-CCCCCCC--CCCCEEE
Q 046900 337 ERLQKRYQMIIEGLRSAGIECLKGNA-GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS-PGSSCHC--SEPGWFR 412 (442)
Q Consensus 337 ~~~~~~~~~l~~~L~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~-pg~~f~~--~~~~~iR 412 (442)
+++.++++++.+.|.+.|+++..+.. .-...+.+..... +...+...| +++||.+. +|..+.. ..++++|
T Consensus 306 ~~i~~l~~~l~~~L~~~g~~v~~~~~~~~~~~v~~~~~~~-----~~~~~~~~L-~~~gI~vs~~~~p~~~~~~~~~~vR 379 (452)
T PTZ00094 306 KQVLKNAKALAAALEKRGYDLVTGGTDNHLVLVDLRPFGI-----TGSKMEKLL-DAVNISVNKNTIPGDKSALNPSGVR 379 (452)
T ss_pred HHHHHHHHHHHHHHHhCCcEEecCCCCCceEeecCCcCCC-----CHHHHHHHH-HHCCcEEecccCCCCCcCCCCCeEE
Confidence 88888999999999888888764221 2234444432111 134455554 66699994 4332221 1247899
Q ss_pred EEeecC-----CHHHHHHHHHHHHHHHHH
Q 046900 413 VCFANM-----SEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 413 ls~~~~-----~~e~i~~~l~~l~~~l~~ 436 (442)
+++... ++++++++++.|.+++..
T Consensus 380 is~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 380 LGTPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred ECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 998532 389999999999998875
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-16 Score=152.87 Aligned_cols=321 Identities=15% Similarity=0.177 Sum_probs=212.9
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh-HhhhcCcE
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD-LRWRTGIK 168 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~-~~~~~G~~ 168 (442)
.|.....+.+|.++++++++ .+.++.+++++.++.+++...+++||.| +..+|...... +. ..|+.
T Consensus 73 ~Yagd~s~~~LE~~vAe~lG----------~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~-~~Ga~ 139 (460)
T PRK13237 73 AYAGSRNFYHLEETVQEYYG----------FKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQE-LNGGI 139 (460)
T ss_pred hhcCCCcHHHHHHHHHHHHC----------CCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHH-hCCcE
Confidence 47777788999999999986 4568999999999998877778999965 44434333333 55 37886
Q ss_pred EEEEecC--------CCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC-CcCCCHHHHHHHHHHHHhcCcEEEEe
Q 046900 169 IVPIHCD--------SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPL-GATIQRSVLEELLDFATRKNIHLVSD 239 (442)
Q Consensus 169 v~~v~~~--------~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPt-G~~~~~~~l~~l~~~~~~~~~~vi~D 239 (442)
.+.+..+ ...++.+|++.|++.|++.. ..+++++.+.+++|.. |...|.++++++.++|++||+.||+|
T Consensus 140 fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~--~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~D 217 (460)
T PRK13237 140 FVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFD 217 (460)
T ss_pred EEeeecccccccccCCCCCCCcCHHHHHHHhcccc--CCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEE
Confidence 6555322 12357899999999997521 2355678888899988 79999999999999999999999999
Q ss_pred ccCCcC-CC------CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc------
Q 046900 240 EIYSGS-AF------SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS------ 306 (442)
Q Consensus 240 e~y~~~-~~------~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~------ 306 (442)
.+...- .+ .+-...++.++..++. .... ..+.|++|.++.+ . .|+++++++.+.+.++....
T Consensus 218 aAra~gna~fI~~re~~y~~~~i~ei~~e~~--s~aD-~~t~S~~K~~~~~-~-GG~i~t~D~eL~~~~r~~~~~~eG~~ 292 (460)
T PRK13237 218 ATRCVENAYFIKEREEGYQDKSIKEIVHEMF--SYAD-GCTMSGKKDCLVN-I-GGFLAMNDEELFDEAKELVVVYEGMP 292 (460)
T ss_pred CcchhcChhhhcccccccCCCcHhHHhhhcc--CcCc-EEEEeCCCCCCCC-C-ceEEEECCHHHHHHHHHhccccCCCc
Confidence 997621 00 1111234444333311 1122 4466899998754 2 49999988888888776532
Q ss_pred -cCCCcHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCccccc--ChhhH
Q 046900 307 -FTLISSQTQYLLASMLSN-KKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQ--TREGE 382 (442)
Q Consensus 307 -~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~--~~~~~ 382 (442)
++.++.--..+++..+.. .+ .+|+....+ .-++|.+.|.+.|+.+..|.||.-++++.......- ....+
T Consensus 293 tygg~~grd~~alAvgl~E~~~--~~y~~~ri~----~~~~l~~~L~~~Gvpv~~p~ggH~v~vda~~~lph~~~~~~p~ 366 (460)
T PRK13237 293 SYGGMAGRDMEAMAIGIEESVQ--YEYIEHRVG----QVRYLGEKLLAAGVPIVEPVGGHAVFLDARRFLPHLPQDQFPA 366 (460)
T ss_pred CCCChhhhHHHHHHhHHHhhch--HHHHHHHHH----HHHHHHHHHHHCCCceecCCCceEEEEEhHHhCCCCCcccChH
Confidence 223332222333322322 11 234433333 447888999999999999999988888765432211 11247
Q ss_pred HHHHHHHHHcCcEEEe-CCCCCCCC-----C-----CCEEEEEee--cCCHHHHHHHHHHHHHHHHH
Q 046900 383 LALWDSMLHEVKLNIS-PGSSCHCS-----E-----PGWFRVCFA--NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 383 ~~l~~~l~~~~gi~v~-pg~~f~~~-----~-----~~~iRls~~--~~~~e~i~~~l~~l~~~l~~ 436 (442)
..++.+|..+.||--. -|+..... . -..+||++. .-+.+.++...++|..+.++
T Consensus 367 ~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 433 (460)
T PRK13237 367 QALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH 433 (460)
T ss_pred HHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence 8889999888888643 23321111 0 146999986 22788899998888887665
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-17 Score=161.55 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhH----hhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDL----RWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~~G~~v~~v 172 (442)
..+|++++|++.+ .+..++|+++++|+.+++.+++++||+|+++...|......+ . ..|++++.+
T Consensus 66 ~~~le~~lA~l~g----------~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~-~~Gi~v~~v 134 (433)
T PRK08134 66 VAVLEERVAALEG----------GVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLR-RFGIETTFV 134 (433)
T ss_pred HHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHh-hCCeEEEEE
Confidence 5788888888865 234688999999999999999999999999999998654443 3 379999988
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+.+ |++.+++.+++ ++|+|++.+|+||+|.+.+ +++|+++|+++|+++|+|.+++.... .
T Consensus 135 d~~-------d~~~l~~~i~~------~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~----~ 194 (433)
T PRK08134 135 KPG-------DIDGWRAAIRP------NTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYL----L 194 (433)
T ss_pred CCC-------CHHHHHHhcCC------CCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCccccc----C
Confidence 753 68999999875 8999999999999999999 78888999999999999999874222 1
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEee
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYS 292 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~ 292 (442)
.++ .+ +-.+++.|.+|.+|-+|-.+|.++.
T Consensus 195 ~pl-~~---------GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 195 RPF-EH---------GADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred Cch-hc---------CCCEEEeccccccCCCCCceEEEEE
Confidence 122 22 2337889999999877776777654
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-18 Score=156.17 Aligned_cols=288 Identities=17% Similarity=0.293 Sum_probs=176.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCC------CCeEEEcCCCCcChHHhHhhhcCcEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADP------GDALLVPTPYYPGFDRDLRWRTGIKIV 170 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~------gd~Vl~~~p~y~~~~~~~~~~~G~~v~ 170 (442)
.++|.+.|.+.... -|+ ..++.-.|++++|+++.+.+++.+|... --.|+...|.|+.|...... ..-...
T Consensus 45 s~eL~~~Ir~LH~~-VGN-Avt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~-f~s~~y 121 (363)
T PF04864_consen 45 SPELERQIRRLHRV-VGN-AVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDF-FDSRLY 121 (363)
T ss_dssp -HHHHHHHHHHHHH-H-S-B--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCC-T-BTTE
T ss_pred cHHHHHHHHHHHHH-hcc-ccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHh-ccccCc
Confidence 36777777765543 342 2244457999999999999999998543 13799999999999887653 322222
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE-EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV-LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS 249 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v-~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~ 249 (442)
...-|. ..|. +-+ . ....| ++++||||.|.+ .+.+++ ..+..+|.|-+|..-.|+.
T Consensus 122 ~w~Gda-~~~~-~~~------------~-~~~~IElVTSPNNPDG~l-----r~~V~~---g~~~k~I~D~AYYWPhyTp 178 (363)
T PF04864_consen 122 KWAGDA-SNFK-NSD------------N-PSPYIELVTSPNNPDGQL-----REAVLN---GSSGKVIHDLAYYWPHYTP 178 (363)
T ss_dssp EEEEEC-CCGT-T-S--------------CCGEEEEEESS-TTT-----------SST---TTEEEEEEE-TT-STTTS-
T ss_pred cccccH-Hhhc-cCC------------C-CCCeEEEEeCCCCCcccc-----cchhcC---CCCcceeeeeeeecccccc
Confidence 222121 1221 100 0 12244 899999999987 445553 5566789999998655542
Q ss_pred CCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCch-
Q 046900 250 SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKK- 326 (442)
Q Consensus 250 ~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~- 326 (442)
+..- .+.-|.+.|+||.-|-+|-|+||.+..++.+.+.+..+... .++|.=+|.-++.+|+..-
T Consensus 179 -----I~~~--------aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~ 245 (363)
T PF04864_consen 179 -----ITAP--------ADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLD 245 (363)
T ss_dssp -------S---------B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHH
T ss_pred -----cCCC--------CCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHh
Confidence 2111 12237889999999999999999999888888887665433 5678778887777776310
Q ss_pred -hH-H----HHHHHHHHHHHHHHHHHHHHHHhCC-Ceee-------------cCCceEEEEEecCCcccccChhhHHHHH
Q 046900 327 -FT-E----NYIKTNRERLQKRYQMIIEGLRSAG-IECL-------------KGNAGLFCWMNLSPLLEEQTREGELALW 386 (442)
Q Consensus 327 -~~-~----~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~-------------~~~~g~~~~~~~~~~~~~~~~~~~~~l~ 386 (442)
+. . +...--++.+++|.+.|.+.+..-+ +... .....-|.|+++... +.+-|
T Consensus 246 ~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~e--------ed~DC 317 (363)
T PF04864_consen 246 GYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCERE--------EDEDC 317 (363)
T ss_dssp HCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSC--------GGSSH
T ss_pred cccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCc--------ccccH
Confidence 00 0 2344567888899999999886632 1111 122445999999752 11236
Q ss_pred HHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHH
Q 046900 387 DSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 387 ~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~ 433 (442)
..+++++||..+.|..|+. ++.++|||.-. ++++++.++++|..+
T Consensus 318 ~~~l~~~~I~tr~G~~fga-~~ryVRlSml~-~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 318 YAVLREAKIITRSGVLFGA-DSRYVRLSMLK-RDDDFDQLLERLSKL 362 (363)
T ss_dssp HHHHHCTTEEEEEGGGGTS--TTEEEEESSS--HHHHHHHHHHHHCC
T ss_pred HHHHHhCCcccCCCCccCC-CCCeEEEeccC-CHHHHHHHHHHHHhh
Confidence 6667788999999999985 57899999987 899999999999864
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-17 Score=154.71 Aligned_cols=168 Identities=21% Similarity=0.288 Sum_probs=140.7
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc-CCCC----eEEEcCCCCcChHHhHhh--hc
Q 046900 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA-DPGD----ALLVPTPYYPGFDRDLRW--RT 165 (442)
Q Consensus 93 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~-~~gd----~Vl~~~p~y~~~~~~~~~--~~ 165 (442)
.-.+.++.|+.||++++ .++.+|++|+|+|++++++++.+. ..+| +|++..-.|+.....++. ..
T Consensus 83 ~~~~~E~aR~~VAklIn--------Ad~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~ 154 (428)
T KOG1549|consen 83 AEDAVEAAREQVAKLIN--------ADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEE 154 (428)
T ss_pred hhHHHHHHHHHHHHHhC--------CCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhc
Confidence 33467899999999987 688889999999999999998873 3566 899999889887665542 27
Q ss_pred CcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcC
Q 046900 166 GIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGS 245 (442)
Q Consensus 166 G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~ 245 (442)
|+++..+|.+. ....|.+.+++.|+. +|+++.+..-+|.+|+++| +++|+++|+++++.+++|.+++-
T Consensus 155 g~~Vt~lpv~~--~~~~d~~~~~~~i~~------~T~lv~I~~Vnn~~gv~~P---v~EI~~icr~~~v~v~~DaAQav- 222 (428)
T KOG1549|consen 155 GLEVTYLPVED--SGLVDISKLREAIRS------KTRLVSIMHVNNEIGVLQP---VKEIVKICREEGVQVHVDAAQAV- 222 (428)
T ss_pred CeEEEEeccCc--cccccHHHHHHhcCC------CceEEEEEecccCcccccc---HHHHHHHhCcCCcEEEeehhhhc-
Confidence 89999999984 345789999999986 9999999999999999999 88889999999999999999983
Q ss_pred CCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecC
Q 046900 246 AFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYN 294 (442)
Q Consensus 246 ~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~ 294 (442)
|.....+.++..+ ++..|.+|.||.+| +|++++.+
T Consensus 223 ---G~i~vDV~eln~D---------~~s~s~HK~ygp~~--iGaLYvr~ 257 (428)
T KOG1549|consen 223 ---GKIPVDVQELNAD---------FLSISAHKIYGPPG--IGALYVRR 257 (428)
T ss_pred ---CCccccHHHcCch---------heeeecccccCCCc--ceEEEEcc
Confidence 5556677777554 56789999999999 89999853
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.9e-18 Score=151.32 Aligned_cols=347 Identities=18% Similarity=0.282 Sum_probs=237.4
Q ss_pred CCCCCCCceeeeecccc------cccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 42 EESTNPSGVIQMGLAEN------QVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 42 ~~~~~~~~~i~l~~~~n------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
..+.+|.. |||+++.. ++-++.++++-++.... .....|.+..|++++.+..+++.-....
T Consensus 47 k~D~n~~K-iNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~----------~ldKEYlpI~Gl~eF~k~sakLa~G~~s-- 113 (427)
T KOG1411|consen 47 KKDPNPKK-INLGVGAYRDDNGKPYVLPSVRKAEQQLASL----------SLDKEYLPITGLAEFNKLSAKLALGDNS-- 113 (427)
T ss_pred hcCCCcce-eeecccceecCCCCeeeeHHHHHHHHHHhhh----------cccchhccccchHHHHHHHHHHhhcCCc--
Confidence 34555544 59998752 34456676654443321 1234799999999999999998643211
Q ss_pred CccCCCcEEEec--ChHHHHHHHHHhh--cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHH
Q 046900 116 AKFDLNRIVVTA--GATAANELLTFIL--ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAY 191 (442)
Q Consensus 116 ~~~~~~~i~~t~--G~~~ai~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l 191 (442)
..+....|+.+. ++|.++......| .-++..|.+|+|+|......+.. .|+.+..+.......-++|.+.+.+.+
T Consensus 114 ~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~-ag~~~~~yrYyd~~t~gld~~g~ledl 192 (427)
T KOG1411|consen 114 PVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKD-AGLPVKFYRYYDPKTRGLDFKGMLEDL 192 (427)
T ss_pred hhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccc-cCcceeeeeeccccccccchHHHHHHH
Confidence 113334555544 4777887765554 34788999999999999999885 899886665443334568888877777
Q ss_pred HHHHhcCCceeEEEEe--CCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC--CcccHHHHHhhhcCCCC
Q 046900 192 KEAESKDMRVRGVLIT--NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS--EFVSIAEILEARQYKDS 267 (442)
Q Consensus 192 ~~~~~~~~~~~~v~l~--~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~--~~~s~~~~~~~~~~~~~ 267 (442)
.+... ..+++. ..|||||+--+.+++++|.++.++.+.+-+.|-+|..|.-+.. ...++.-+..+ .
T Consensus 193 ~~~p~-----gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~-----g 262 (427)
T KOG1411|consen 193 GEAPE-----GSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVED-----G 262 (427)
T ss_pred hcCCC-----CcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHc-----C
Confidence 65321 223444 3489999999999999999999999999999999998764321 12233334443 4
Q ss_pred CcEEEEecCcccCCCCCceeEEE--eecCHHHHHHHH----Hcc-ccC-CCcHHHHHHHHHHhcCchhHHHHHH---HHH
Q 046900 268 ERVHIVYSLSKDLGLPGFRVGTI--YSYNDKVVTTAR----RMS-SFT-LISSQTQYLLASMLSNKKFTENYIK---TNR 336 (442)
Q Consensus 268 ~~vi~~~S~SK~~g~~G~RiG~i--~~~~~~~~~~~~----~~~-~~~-~~s~~~q~~~~~~l~~~~~~~~~~~---~~~ 336 (442)
.++++..|+.|.+|+.|-|+|.+ +|.++.....++ ... ..+ ..+.....++..+|++.+...+|+. -+.
T Consensus 263 ~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~Ma 342 (427)
T KOG1411|consen 263 HEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMA 342 (427)
T ss_pred CceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHH
Confidence 67888999999999999999985 565555444432 222 222 2233466677888998876666654 467
Q ss_pred HHHHHHHHHHHHHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEE
Q 046900 337 ERLQKRYQMIIEGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFR 412 (442)
Q Consensus 337 ~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iR 412 (442)
+++...|+.|.+.|+..| |..+..+-|||++-.+.. +..+.|.+++.|.+.- +| |
T Consensus 343 dRi~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~p-----------eQv~~l~ke~~iYmT~--------dG--R 401 (427)
T KOG1411|consen 343 DRIISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGLNP-----------EQVDWLTKEYHIYLTK--------DG--R 401 (427)
T ss_pred HhhhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecCCCH-----------HHHHHHHhhheeeecc--------Cc--e
Confidence 888899999999998764 444667889999765543 4467777887887652 33 8
Q ss_pred EEeecCCHHHHHHHHHHHHHH
Q 046900 413 VCFANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 413 ls~~~~~~e~i~~~l~~l~~~ 433 (442)
||.+.++...+..+.++|.++
T Consensus 402 iS~aG~ss~nV~yLa~aih~v 422 (427)
T KOG1411|consen 402 ISMAGLSSSNVPYLADAIHAV 422 (427)
T ss_pred EeeccccccCCcccchhhHhH
Confidence 999876666666666666554
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-16 Score=146.43 Aligned_cols=303 Identities=17% Similarity=0.237 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHHHHhCCCCccCC-CcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcC--hHHhHhhhcCcEEEEEec
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDL-NRIVVTAGATAANELLTFILADPGDALLVPTPYYPG--FDRDLRWRTGIKIVPIHC 174 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~-~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~--~~~~~~~~~G~~v~~v~~ 174 (442)
..+-+.+.+.+...++ .+. +-++++.+++.+++.++..+++|||+||+...+..+ +.+.++ ++|++++.+..
T Consensus 37 ~~~~~~~~~~L~~v~~----t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~-~~g~~v~~~~~ 111 (383)
T COG0075 37 VGIMKEVLEKLRKVFG----TENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAE-RYGAEVVVLEV 111 (383)
T ss_pred HHHHHHHHHHHHHHhc----CCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHH-HhCCceEEEeC
Confidence 4555555555555544 333 446666779999999999999999999998877654 456677 59999999887
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s 254 (442)
.+ +-.+|+++++++|++ +++.++|.+++.-.+||...+ +++|+++|++|+.++|+|.+-+ +++.++ .
T Consensus 112 ~w--g~~v~p~~v~~~L~~----~~~~~~V~~vH~ETSTGvlnp---l~~I~~~~k~~g~l~iVDaVsS---~Gg~~~-~ 178 (383)
T COG0075 112 EW--GEAVDPEEVEEALDK----DPDIKAVAVVHNETSTGVLNP---LKEIAKAAKEHGALLIVDAVSS---LGGEPL-K 178 (383)
T ss_pred CC--CCCCCHHHHHHHHhc----CCCccEEEEEeccCcccccCc---HHHHHHHHHHcCCEEEEEeccc---CCCccc-c
Confidence 65 346899999999984 347788999888889999987 8889999999999999999987 455432 3
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHHH-------------------ccccCCCcHHH
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARR-------------------MSSFTLISSQT 314 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~-------------------~~~~~~~s~~~ 314 (442)
+.++ +.-+++.+--|.++ .|| +|++..+++.+.....+ ...+++.+...
T Consensus 179 vd~w---------giDv~itgSQK~l~~PPG--la~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~ 247 (383)
T COG0075 179 VDEW---------GIDVAITGSQKALGAPPG--LAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNL 247 (383)
T ss_pred hhhc---------CccEEEecCchhccCCCc--cceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHH
Confidence 3333 44477888899986 444 68888754333322111 11123334445
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC---ceEEEEEecCCcccccChhhHHHHHHHHHH
Q 046900 315 QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN---AGLFCWMNLSPLLEEQTREGELALWDSMLH 391 (442)
Q Consensus 315 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 391 (442)
..++...|+.. .++-++...++.++..+.+.+.++.+|++....+ ......+.+|...+ ..++...+++
T Consensus 248 i~aL~~al~~i--~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~~P~g~~------~~~~~~~~~~ 319 (383)
T COG0075 248 IYALREALDLI--LEEGLEARIARHRRLAEALRAGLEALGLELFADPERRSPTVTAIKVPEGVD------DKKVRRALLK 319 (383)
T ss_pred HHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCceEEEECCCCCC------cHHHHHHHHH
Confidence 55555555532 2445677888899999999999999999877622 33344556676543 2334447888
Q ss_pred cCcEEEeCCCCCCCCCCCEEEEEe-ecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 392 EVKLNISPGSSCHCSEPGWFRVCF-ANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 392 ~~gi~v~pg~~f~~~~~~~iRls~-~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
++|+.+.+|.. ......+||+. +..+.+++..++.+|..++.++..
T Consensus 320 ~~g~~i~gg~~--~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g~ 366 (383)
T COG0075 320 EYGVEIAGGQG--PLKGKIFRIGHMGNVRPEDVLAALAALEAALRELGV 366 (383)
T ss_pred hCCEEeccccc--ccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcCC
Confidence 88999988743 33456899986 455889999999999999988654
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-16 Score=154.01 Aligned_cols=277 Identities=20% Similarity=0.240 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---hcCcEEEEEec
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---RTGIKIVPIHC 174 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~~G~~v~~v~~ 174 (442)
..|.+++|+..+ .+.+++++++..|+..++.+++++||+|+++...|.+....+.. ..|+++..++.
T Consensus 58 ~~le~~la~Le~----------g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~ 127 (386)
T PF01053_consen 58 RALEQRLAALEG----------GEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP 127 (386)
T ss_dssp HHHHHHHHHHHT-----------SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST
T ss_pred HHHHHHHHHhhc----------ccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCc
Confidence 455566655543 47799999999999999999999999999999999886655432 37999888753
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcC-cEEEEeccCCcCCCCCCCcc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKN-IHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~-~~vi~De~y~~~~~~~~~~~ 253 (442)
-|++++++++++ ++++|++.+|+||+..+.+ +++|+++|+++| +++|+|..++...+ .
T Consensus 128 -------~d~~~l~~~l~~------~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~----~- 186 (386)
T PF01053_consen 128 -------TDLEALEAALRP------NTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYN----Q- 186 (386)
T ss_dssp -------TSHHHHHHHHCT------TEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTT----C-
T ss_pred -------hhHHHHHhhccc------cceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccceee----e-
Confidence 378999999976 8999999999999988877 888899999998 99999999985321 1
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecC-HHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYN-DKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~-~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~ 329 (442)
....+ +-.+++.|.+|.++ ....=.|.+++.+ +.+.+.++..... ..+++...+.+..-+++.
T Consensus 187 ~pL~~---------GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl---- 253 (386)
T PF01053_consen 187 NPLEL---------GADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTL---- 253 (386)
T ss_dssp -GGGG---------T-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTH----
T ss_pred ccCcC---------CceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcH----
Confidence 11222 23388999999885 2323367888755 4566555443322 234555555555555542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCe-eec-----------------CCceEEEEEecCCcccccChhhHHHHHHHHH
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSA-GIE-CLK-----------------GNAGLFCWMNLSPLLEEQTREGELALWDSML 390 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~-----------------~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~ 390 (442)
..+.++..++...+.+.|+++ .++ +.- ..+| .+.+++.... +....+++.|
T Consensus 254 ---~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg-l~sf~l~~~~-----~~~~~f~~~l- 323 (386)
T PF01053_consen 254 ---PLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGG-LLSFELKGGE-----EAARRFLDAL- 323 (386)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTS-EEEEEESSHH-----HHHHHHHHH--
T ss_pred ---HHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCc-eeEEEeccch-----hhhHhHHhhh-
Confidence 334455566777888999886 232 221 1244 6667776632 1244555544
Q ss_pred HcCcEEEeCCCCCCC-------------------------CCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 391 HEVKLNISPGSSCHC-------------------------SEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 391 ~~~gi~v~pg~~f~~-------------------------~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
.+. ..|..+|. -.++.||||++- |+.+.+++.|.++++
T Consensus 324 ---~l~-~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl---Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 324 ---KLF-SIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL---EDPDDLIADLEQALE 386 (386)
T ss_dssp ---SSS-EESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S---S-HHHHHHHHHHHHH
T ss_pred ---hhH-hhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEecc---CCHHHHHHHHHHhcC
Confidence 322 11111221 124689999996 557777888887764
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.1e-17 Score=141.68 Aligned_cols=304 Identities=16% Similarity=0.238 Sum_probs=210.7
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD 175 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~ 175 (442)
.+..+.+.+++|++ -|.+-+|+|+.++-+.++.+|+++||.|+++..+|....-++. +.|+++..||-.
T Consensus 62 pI~~F~~dlaeFlg----------~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAE-ragl~v~eVp~t 130 (382)
T COG1103 62 PIKDFLEDLAEFLG----------MDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAE-RAGLNVAEVPNT 130 (382)
T ss_pred cHHHHHHHHHHHhC----------CceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHH-hcCCeEEecCCC
Confidence 35677888999986 6789999999999999999999999999999988766555666 499999999976
Q ss_pred CCCCCcCCHHHHHHHHHHHHhcC-CceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc
Q 046900 176 SSNNFQITPQALEAAYKEAESKD-MRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 176 ~~~~~~~d~~~l~~~l~~~~~~~-~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s 254 (442)
....|.++++...+.|.+..+++ ..+.+.+++.|...-|.+.+ -++++++|++++++++...+|.- |..+.|
T Consensus 131 g~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D---akkva~ic~e~gvPlllN~AYt~----Grmpvs 203 (382)
T COG1103 131 GYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD---AKKVAKICREYGVPLLLNCAYTV----GRMPVS 203 (382)
T ss_pred CCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchh---hHHHHHHHHHcCCceEeecceee----cccccc
Confidence 66679999999999999887765 44677788888776777644 78999999999999999999984 445566
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHH-HHHccc--------cCCCcHHHHHHHHHHhcCc
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT-ARRMSS--------FTLISSQTQYLLASMLSNK 325 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~-~~~~~~--------~~~~s~~~q~~~~~~l~~~ 325 (442)
..++..+ ++++|-+|.|+ +.-.+|.+... +++.+. +++... ..+++.-... +..++.+-
T Consensus 204 ~ke~g~D---------FiVgSGHKsmA-As~PiGvl~~~-eE~ae~V~r~Sg~~~~~KEvellGCT~rGap-ivTlmASf 271 (382)
T COG1103 204 GKEIGAD---------FIVGSGHKSMA-ASAPIGVLAMS-EEWAEIVLRRSGRAFPKKEVELLGCTVRGAP-IVTLMASF 271 (382)
T ss_pred ccccCCC---------EEEecCccchh-ccCCeeEEeeh-hHHHHHHHhhcccccccceeeeecccccCch-HHHHHhcC
Confidence 6666544 78899999997 55689999884 444443 443312 1223321112 22333332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCC-Ceee--cCCceEEEEEecCCccc--ccChhhHHHHHHHHHHcCcEE-EeC
Q 046900 326 KFTENYIKTNRERLQKRYQMIIEGLRSAG-IECL--KGNAGLFCWMNLSPLLE--EQTREGELALWDSMLHEVKLN-ISP 399 (442)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~--~~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~gi~-v~p 399 (442)
-+..+.+++.-+. -++.+++.+.|+++| +... .|..--.+.++.|..-. .+......-++++|.++ ||. +.|
T Consensus 272 P~V~eRVkrWdeE-v~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~R-gI~GI~~ 349 (382)
T COG1103 272 PHVVERVKRWDEE-VEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKR-GIHGIQP 349 (382)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHHHhc-Ccccccc
Confidence 3333333333333 345568888888874 5433 23333344455554210 00000123456777555 765 444
Q ss_pred CCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 400 GSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 400 g~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
| ...+|.+|+-.++.|+++..+++++++++++
T Consensus 350 G------~Tk~~K~svyGl~~Eqve~V~~afkeI~eky 381 (382)
T COG1103 350 G------QTKYFKLSVYGLSWEQVEYVVDAFKEIAEKY 381 (382)
T ss_pred C------ceeEEEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 3 2468999998789999999999999998875
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.9e-17 Score=158.25 Aligned_cols=156 Identities=20% Similarity=0.236 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----HhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD----LRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~~G~~v~~v 172 (442)
...|++.+|++.+ .+..+++++++.|+..++.+++++||+|+++...|...... +. ..|++++.+
T Consensus 71 ~~~Le~~lA~l~g----------~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~-~~Gi~v~~v 139 (436)
T PRK07812 71 QDVVEQRIAALEG----------GVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLP-KLGIEVSFV 139 (436)
T ss_pred HHHHHHHHHHHhC----------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhh-cCeEEEEEE
Confidence 4677777777764 34567888888999999999999999999999888775433 33 378888777
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+ +. .|++.+++++++ ++++|++.+|+||+|.+.+ +++|.++|+++|+++|+|++++.... .
T Consensus 140 d-d~-----~d~e~l~~ai~~------~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~----~ 200 (436)
T PRK07812 140 E-DP-----DDLDAWRAAVRP------NTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYL----I 200 (436)
T ss_pred C-CC-----CCHHHHHHhCCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc----C
Confidence 5 22 278889888764 7899999999999999999 77888888899999999999874221 1
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEee
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYS 292 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~ 292 (442)
.++ .+ +--+++.|++|.+|..|--+|.+++
T Consensus 201 ~pl-~~---------GaDivv~S~tK~lgg~G~~i~G~vv 230 (436)
T PRK07812 201 RPL-EH---------GADIVVHSATKYLGGHGTAIAGVIV 230 (436)
T ss_pred Cch-hc---------CCCEEEEecccccCCCCCeEEEEEE
Confidence 121 22 2236789999999877766777766
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-16 Score=166.17 Aligned_cols=318 Identities=13% Similarity=0.104 Sum_probs=213.8
Q ss_pred cccccCCC---cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChH----HHHHHHHHhhcCC-CC----eEEEcCCCC
Q 046900 87 ENALFQDY---HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGAT----AANELLTFILADP-GD----ALLVPTPYY 154 (442)
Q Consensus 87 ~~~~Y~~~---~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~----~ai~~~~~~l~~~-gd----~Vl~~~p~y 154 (442)
.++-|.|. +|+.++.+.+.+++.+..| .+.|.++.+++ +++.++++++.++ || .|+++...|
T Consensus 553 ~~hp~~p~~~~~g~~~~~~~~r~~la~i~g------~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH 626 (993)
T PLN02414 553 NIHPFAPVDQAQGYQEMFEDLGDLLCEITG------FDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAH 626 (993)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHhC------CCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcC
Confidence 34445443 5777777777777776655 38999999998 8999999999866 88 899999999
Q ss_pred cChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCc
Q 046900 155 PGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNI 234 (442)
Q Consensus 155 ~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~ 234 (442)
......+.. .|++++.+|+++++ .+|+++|++.++++ ..++++|++++|+|-+|...+ +++|+++|+++|+
T Consensus 627 ~sn~a~a~~-~G~~vv~v~~d~~G--~vDle~L~~~i~~~---~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Ga 697 (993)
T PLN02414 627 GTNPASAAM-CGMKIVVVGTDAKG--NINIEELRKAAEAH---KDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGG 697 (993)
T ss_pred ccCHHHHHH-CCCEEEEeccCCCC--CcCHHHHHHHHhcc---CCCeEEEEEECCCccccccch---HHHHHHHHHHcCC
Confidence 998888885 89999999997654 68999999999742 126889999999999999866 8888999999999
Q ss_pred EEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC----CCCceeEEEeecCHHHHHHHHH-------
Q 046900 235 HLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG----LPGFRVGTIYSYNDKVVTTARR------- 303 (442)
Q Consensus 235 ~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g----~~G~RiG~i~~~~~~~~~~~~~------- 303 (442)
++++|.++..... ......++ +--+++.|.+|+|+ ..|-.+|++.+. +.+...+-.
T Consensus 698 lv~vDgAq~~a~~---~l~~p~~~---------GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~-~~L~p~lPg~~v~~~~ 764 (993)
T PLN02414 698 QVYMDGANMNAQV---GLTSPGFI---------GADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVPTG 764 (993)
T ss_pred EEEEEecCHHhcc---CcCCcccc---------CCCEEEecCCccCCcCcccCCCCeeeEEEc-hhhcccCCCCccccCC
Confidence 9999999853211 11222222 33377889999765 234458998873 444333210
Q ss_pred -----ccc--cCCCc--H----HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEE--EE
Q 046900 304 -----MSS--FTLIS--S----QTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLF--CW 367 (442)
Q Consensus 304 -----~~~--~~~~s--~----~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~--~~ 367 (442)
... .+.++ + ....++..++...+ .+.+++..+....+..++.+.|.+. ++.+..+.+.++ +.
T Consensus 765 ~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG--~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv 842 (993)
T PLN02414 765 GIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMG--SEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFI 842 (993)
T ss_pred CcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHC--HhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEE
Confidence 011 12211 1 22222333333322 3456777777888889999999763 454444444322 22
Q ss_pred EecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 368 MNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
++++...+..+ .++.++.++|++ +||...- ..|. ..+++||+.. .-+++++++++++|.++..+...
T Consensus 843 ~~~~~l~~~~g-~~~~di~krL~d-~Gihapt-~~~p--v~~~lmiepTE~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 843 IDLRPFKNTAG-IEPEDVAKRLMD-YGFHAPT-MSWP--VPGTLMIEPTESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred EeccccccccC-CCHHHHHHHHHH-cCcEEee-eccc--cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 34443221111 135789999985 5998544 3342 3678999986 22899999999999988877553
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-16 Score=154.96 Aligned_cols=354 Identities=14% Similarity=0.084 Sum_probs=200.9
Q ss_pred CCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+...+.+||+..+. +.+ ..+.+.+.+.++... ...+.......+.+..+|+.+.+.... ..
T Consensus 52 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~------------~~~~~~~~~~~~~~~~la~~l~~~~p~---~~ 116 (443)
T PRK06058 52 DVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVAR------------FTHTCFMVTPYEGYVAVAEQLNRLTPG---DH 116 (443)
T ss_pred eCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHh------------ccCccccccCCHHHHHHHHHHHHhCCC---CC
Confidence 34456788886543 333 335555555544321 111111122346666777777654320 11
Q ss_pred CCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCc-------------EEEEEecCCC--C--CC
Q 046900 120 LNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGI-------------KIVPIHCDSS--N--NF 180 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~-------------~v~~v~~~~~--~--~~ 180 (442)
.+.+++++++++|++.+++... ...+.|+....+|.+....+....+. .+..+|.... . .+
T Consensus 117 ~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (443)
T PRK06058 117 EKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGL 196 (443)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCccccccccc
Confidence 2478999999999999887431 23478999999998876443211111 1122221100 0 00
Q ss_pred cCCH-HHHHHHHHHHHh--cCCceeEEEEeCCCCCC-CcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccH
Q 046900 181 QITP-QALEAAYKEAES--KDMRVRGVLITNPSNPL-GAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSI 255 (442)
Q Consensus 181 ~~d~-~~l~~~l~~~~~--~~~~~~~v~l~~P~NPt-G~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~ 255 (442)
..+. +.+++.+....+ ...++.+ ++..|-+.. |.+ .+.+-+++|.++|++||+++|.||++..+...+..+. .
T Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~iAa-vi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa-~ 274 (443)
T PRK06058 197 ATDGEEAAARAITVIEKQVGADNLAA-VIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFA-C 274 (443)
T ss_pred ccchHHHHHHHHHHHHHhhCCCceEE-EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhH-H
Confidence 0111 222222221111 1235555 456676555 444 3577799999999999999999999998755553221 1
Q ss_pred HHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc--cccCCCcHHHHHHHHHHhcCchhHHHHHH
Q 046900 256 AEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM--SSFTLISSQTQYLLASMLSNKKFTENYIK 333 (442)
Q Consensus 256 ~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~ 333 (442)
+.. . ....+ -+++|.+| .|+++|++++ ++.+.+.+... ...+..+++++.++.+.|+... + .
T Consensus 275 -~~~-g----v~PDi---v~~gK~l~-~G~Pi~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~--~---~ 338 (443)
T PRK06058 275 -EHE-G----IVPDL---ITTAKGIA-GGLPLSAVTG-RAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIE--E---D 338 (443)
T ss_pred -Hhc-C----CCCCE---EEEccccc-CCCccEEEEE-cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHH--H---c
Confidence 111 0 11222 35689998 8999999999 56666665432 2335678888888888876321 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHhC----CCee-ecCCceEEEEEecCCcc-cccChhhHHHHHHHHHHcCcEEEeCCCCCCCCC
Q 046900 334 TNRERLQKRYQMIIEGLRSA----GIEC-LKGNAGLFCWMNLSPLL-EEQTREGELALWDSMLHEVKLNISPGSSCHCSE 407 (442)
Q Consensus 334 ~~~~~~~~~~~~l~~~L~~~----g~~~-~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~ 407 (442)
...+..+++.+++.+.|+++ ++.. ....|. ++.+.+.... .....+....+...++++ ||.+.|+..|+
T Consensus 339 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~-~~~i~~~~~~~~~~~~~~~~~l~~~~~~~-Gv~~~~~~~~~--- 413 (443)
T PRK06058 339 DLVARARQIEALMTDRLRALAAEDDRIGDVRGRGA-MIAIELVKPGTTEPDAELTKALAAAAHAA-GVIVLTCGTYG--- 413 (443)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccce-EEEEEEecCCCCCCcHHHHHHHHHHHHHC-CeEEeccCCCC---
Confidence 23344445555666666542 3211 334554 5455553210 111112245677777676 99999875543
Q ss_pred CCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 408 PGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 408 ~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
.++|+..+ .++++++++++++|.+++++
T Consensus 414 -~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 414 -NVIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred -CEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 58999755 34999999999999999865
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.6e-16 Score=153.22 Aligned_cols=360 Identities=13% Similarity=0.070 Sum_probs=197.7
Q ss_pred CCCCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|..+.....+||+..+- ..+ .++.+.+.+.++..... . .+ ......+.+..+|+.+.+....+
T Consensus 31 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~----------~-~~-~~~~~~~~~~~lae~l~~~~~~~ 98 (425)
T PRK09264 31 SWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDG----------I-TH-GLDMHTTAKREFLETFEETILKP 98 (425)
T ss_pred CEEEeCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhcc----------c-cc-ccccCcHHHHHHHHHHHHhhcCC
Confidence 333445566788886553 223 33555555554332100 0 00 00111345555666655431100
Q ss_pred CccCCCcEEE-ecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcC------------cEEEEEecCCCCCC
Q 046900 116 AKFDLNRIVV-TAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTG------------IKIVPIHCDSSNNF 180 (442)
Q Consensus 116 ~~~~~~~i~~-t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G------------~~v~~v~~~~~~~~ 180 (442)
.+. .+.+++ ++++++|++.+++... ....+|+...-+|.+....+....| ..+..+|.......
T Consensus 99 ~~~-~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 177 (425)
T PRK09264 99 RGL-DYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGG 177 (425)
T ss_pred cCC-CceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCcccc
Confidence 001 125656 5899999998877652 2235788888888775432211111 02333333210000
Q ss_pred c-CCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHH
Q 046900 181 Q-ITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEI 258 (442)
Q Consensus 181 ~-~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~ 258 (442)
. -|++.+++.+.+......++.+|++..-....|. +.+.+.+++|.++|++||+++|+||++..+...|..+ .....
T Consensus 178 ~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~-~~~~~ 256 (425)
T PRK09264 178 DVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFF-SFERA 256 (425)
T ss_pred chhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHH-HHhhc
Confidence 0 2567888888653211124555555544556776 5678889999999999999999999998765444211 11111
Q ss_pred HhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhc----CchhHHHHH
Q 046900 259 LEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLS----NKKFTENYI 332 (442)
Q Consensus 259 ~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~----~~~~~~~~~ 332 (442)
.- .++ +.++||.+|..|+++|+++++ +.+. .+.. ....+..++++..++.+.+. +.+. .+++
T Consensus 257 ~v-----~PD----i~t~~K~l~~~G~pigav~~~-~~i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l-~~~~ 324 (425)
T PRK09264 257 GI-----TPD----IVTLSKSISGYGLPMALVLIK-PELD-VWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAF-EKEV 324 (425)
T ss_pred CC-----CCC----EEEeccccCCCccceEEEEEc-hhhh-ccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHH-HHHH
Confidence 10 122 347799998449999999995 4443 3221 12223445555555444442 2221 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC-CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEE
Q 046900 333 KTNRERLQKRYQMIIEGLRSAG-IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWF 411 (442)
Q Consensus 333 ~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~i 411 (442)
+++.+.++++.+.+.+ +.+ +.......|+++|+.++... ....++..++++ ||.+.++..+ ...+
T Consensus 325 ~~~g~~l~~~l~~l~~---~~~~~~~~vrg~Gl~~~i~l~~~~------~~~~l~~~~~~~-Gv~~~~~~~~----~~~l 390 (425)
T PRK09264 325 KAKGELVRERLEEIAA---KYPGLGAEVRGRGMMQGIDFGDGE------LAGKIAAEAFEN-GLIIETSGPE----DEVV 390 (425)
T ss_pred HHHHHHHHHHHHHHHH---hCCCceecceecccEEEEEecChH------HHHHHHHHHHHC-CCEEeccCCC----CCEE
Confidence 3333333333322222 222 21223456788899986521 256778888776 9999875432 3568
Q ss_pred EEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 412 RVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 412 Rls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
|++.. .++++++++++++|.+++++..+
T Consensus 391 r~~p~l~~t~~ei~~~~~~l~~~l~~~~~ 419 (425)
T PRK09264 391 KLLPPLTIDEEELEEGLDILEEAVAEVLA 419 (425)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 88865 34899999999999999887543
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=144.50 Aligned_cols=166 Identities=22% Similarity=0.244 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH-HhHhhhcCcEEEEEecCC
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD-RDLRWRTGIKIVPIHCDS 176 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~-~~~~~~~G~~v~~v~~~~ 176 (442)
.++++.++++++ .+.+++++++|+++++.+++.++.+++++|+++.++|++.. ..+. ..|+++..++.+.
T Consensus 3 ~~~~~~l~~~~~--------~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~ 73 (170)
T cd01494 3 EELEEKLARLLQ--------PGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAE-LAGAKPVPVPVDD 73 (170)
T ss_pred HHHHHHHHHHcC--------CCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHH-hcCCEEEEeccCC
Confidence 578888888874 35788999999999999999999888999999999999888 6666 4899999999876
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHH
Q 046900 177 SNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIA 256 (442)
Q Consensus 177 ~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~ 256 (442)
.+....+.+.+++... +.+++++++++|+||+|..++. ++|.++|+++++++|+|++|..+...... .
T Consensus 74 ~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~g~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~~~~~----~ 141 (170)
T cd01494 74 AGYGGLDVAILEELKA-----KPNVALIVITPNTTSGGVLVPL---KEIRKIAKEYGILLLVDAASAGGASPAPG----V 141 (170)
T ss_pred CCccchhhhhhhhccc-----cCceEEEEEecCcCCCCeEcCH---HHHHHHHHHcCCEEEEecccccccccccc----c
Confidence 5433333334443322 3478899999999999999884 77788888999999999999976654321 0
Q ss_pred HHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEee
Q 046900 257 EILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYS 292 (442)
Q Consensus 257 ~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~ 292 (442)
.... .+..+++.|++|.||. .++|++++
T Consensus 142 ~~~~------~~~d~~~~s~~K~~~~--~~~G~l~~ 169 (170)
T cd01494 142 LIPE------GGADVVTFSLHKNLGG--EGGGVVIV 169 (170)
T ss_pred cccc------ccCCEEEEEcccccCC--CceEEEEe
Confidence 1111 2445778999999974 67999986
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-16 Score=155.24 Aligned_cols=169 Identities=17% Similarity=0.307 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh---------cCCCCeEEEcCCCCcChHHhHhhhcCc
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL---------ADPGDALLVPTPYYPGFDRDLRWRTGI 167 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l---------~~~gd~Vl~~~p~y~~~~~~~~~~~G~ 167 (442)
..+|++++|+|++ .+++++++|+++++.+++.++ +++||.|+++.|+|+.+...+.. .|+
T Consensus 65 ~~~fe~~lA~~~g----------~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~-~G~ 133 (438)
T PRK15407 65 NDAFEKKLAEFLG----------VRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQ-NGL 133 (438)
T ss_pred HHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHH-cCC
Confidence 4789999999975 346999999999999988775 47899999999999999988885 899
Q ss_pred EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC-
Q 046900 168 KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA- 246 (442)
Q Consensus 168 ~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~- 246 (442)
+++.++++. ..|.+|++.+++.+.+ ++++|+++++ +|... ++++|.++|++++++||+|++++...
T Consensus 134 ~pv~vdvd~-~~~~id~~~le~~i~~------~tkaVi~~~~---~G~p~---dl~~I~~la~~~gi~vIeDaa~a~G~~ 200 (438)
T PRK15407 134 VPVFVDVEL-PTYNIDASLLEAAVSP------KTKAIMIAHT---LGNPF---DLAAVKAFCDKHNLWLIEDNCDALGST 200 (438)
T ss_pred EEEEEecCC-CcCCcCHHHHHHHcCc------CCeEEEEeCC---CCChh---hHHHHHHHHHHCCCEEEEECccchhhh
Confidence 999999874 3678999999998864 7899998864 44433 47889999999999999999998432
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecC--cccCCCCCceeEEEeecCHHHHHHHHHc
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSL--SKDLGLPGFRVGTIYSYNDKVVTTARRM 304 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~--SK~~g~~G~RiG~i~~~~~~~~~~~~~~ 304 (442)
+.+....+ + + .+.+.|| +|.+. .| ..|+++++++.+.+.++.+
T Consensus 201 ~~g~~~G~---~---------g-d~~~fSf~~~k~~~-~g-eGG~l~t~d~~l~~~~~~~ 245 (438)
T PRK15407 201 YDGRMTGT---F---------G-DIATLSFYPAHHIT-MG-EGGAVFTNDPLLKKIIESF 245 (438)
T ss_pred cCCeeeec---c---------C-ceEEEeCCCCCCcc-cc-CceEEEECCHHHHHHHHHH
Confidence 22211111 1 1 1345566 46664 34 3599999888887766543
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-15 Score=151.99 Aligned_cols=350 Identities=15% Similarity=0.090 Sum_probs=198.8
Q ss_pred CCCCCCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|..+...+.+||+..+ .+.++ ++.+.+.+.+....... .....| ..+.+..+|+.+.+...
T Consensus 34 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-------~~~~~~-----~~~~~~~la~~l~~~~p-- 99 (423)
T PRK05964 34 AYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDH-------VIFAGF-----THEPAERLAQRLVALTP-- 99 (423)
T ss_pred cEEEeCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCC-------cccccc-----CCHHHHHHHHHHHHhCC--
Confidence 34444556778898655 33332 35555555544321000 000011 13455667777765421
Q ss_pred CccCCCcEEEecChHHHHHHHHHhhcC-------C-CCeEEEcCCCCcChHHhHhhhcCc------------EEEEEecC
Q 046900 116 AKFDLNRIVVTAGATAANELLTFILAD-------P-GDALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCD 175 (442)
Q Consensus 116 ~~~~~~~i~~t~G~~~ai~~~~~~l~~-------~-gd~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~ 175 (442)
-..+.+++++++++|++.+++.... + ..+|+...-+|.+....+....+- .+..++..
T Consensus 100 --~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~ 177 (423)
T PRK05964 100 --GGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFP 177 (423)
T ss_pred --CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCC
Confidence 1236899999999999998876521 2 357888888887754332211111 11222221
Q ss_pred CCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeC-CCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITN-PSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 176 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~-P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
..+....+.+.+++.+.+. +.++.+|++.. .++.+|... +.+.+++|.++|++||+++|+||++..+...|..+.
T Consensus 178 ~~d~~~~~~~~l~~~l~~~---~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a 254 (423)
T PRK05964 178 PDGYEQATLDALEALLEKH---AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFA 254 (423)
T ss_pred cchhHHHHHHHHHHHHHhC---CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhH
Confidence 1000011267777777642 23565655543 367778765 888899999999999999999999987655443211
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHc--------cccCCCcHHHHHHHHHHhcC
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRM--------SSFTLISSQTQYLLASMLSN 324 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~--------~~~~~~s~~~q~~~~~~l~~ 324 (442)
. +.. +...-+.++||+++ .| +++|++++ ++.+.+.+... ...+..++++..++.+.++-
T Consensus 255 -~-~~~--------~v~pDi~~~~K~l~-gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~ 322 (423)
T PRK05964 255 -C-EQA--------GVSPDIMCLSKGLT-GGYLPLAATLC-TAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDL 322 (423)
T ss_pred -H-Hhc--------CCCCCeeeeehhhh-cCcccceEEEE-cHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHH
Confidence 1 110 11112347899997 55 89999888 67777665421 11234566776666666552
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee--cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCC
Q 046900 325 KKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECL--KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGS 401 (442)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~ 401 (442)
.+ + ....+...+.-+++.+.|++. ..... ...-|+++.+.+..... ......+...|+++ ||.+.+.
T Consensus 323 l~---~--~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~---~~~~~~l~~~l~~~-Gv~v~~~- 392 (423)
T PRK05964 323 FE---D--EPVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVL---ERDGPALRAFALER-GVLLRPL- 392 (423)
T ss_pred HH---h--cCHHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcc---hhHHHHHHHHHHHC-CeEEEec-
Confidence 11 0 112233333344444444433 22211 12335566666643210 01245777788776 9999873
Q ss_pred CCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 402 SCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 402 ~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
.+.+|++.. .++++++++++++|.+++++
T Consensus 393 ------~~~lR~~p~l~~t~edId~~v~~l~~al~~ 422 (423)
T PRK05964 393 ------GNTIYLMPPYIITAEELDRITDAIVEVADE 422 (423)
T ss_pred ------CCEEEEeCCcccCHHHHHHHHHHHHHHHhh
Confidence 136999976 34999999999999999865
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-15 Score=149.95 Aligned_cols=338 Identities=14% Similarity=0.121 Sum_probs=196.6
Q ss_pred CCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+|||..+ .+.++ .+.+.+.+.+..... ...+ ...+.++...+|+++.+.. .
T Consensus 32 d~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~-----------~~~~--~~~~~~~~~~la~~l~~~~------~ 92 (395)
T PRK03715 32 DHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKL-----------INPS--PAFYNEPMAKLAGLLTQHS------C 92 (395)
T ss_pred ECCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhc-----------cccc--ccccCHHHHHHHHHHhhcc------C
Confidence 3445678898753 23332 355555444432210 0111 1123577788899887531 2
Q ss_pred CCcEEEecChHHHHHHHHHhhcC------CC-CeEEEcCCCCcChHHhHhhhcCcEEEE---EecCCCCCC----cCCHH
Q 046900 120 LNRIVVTAGATAANELLTFILAD------PG-DALLVPTPYYPGFDRDLRWRTGIKIVP---IHCDSSNNF----QITPQ 185 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~------~g-d~Vl~~~p~y~~~~~~~~~~~G~~v~~---v~~~~~~~~----~~d~~ 185 (442)
.+.+++++++++|+..+++.... +| ..|+..+.+|.+.........|..... .|.. .++ ..|++
T Consensus 93 ~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~d~~ 170 (395)
T PRK03715 93 FDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQV--PGFPKAELNDIA 170 (395)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCC--CCceeeCCchHH
Confidence 46899999999999999887741 23 568888888776543322123322111 1111 111 13678
Q ss_pred HHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcC
Q 046900 186 ALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQY 264 (442)
Q Consensus 186 ~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~ 264 (442)
.+++.+.+ ++.+|++...++..|... +.+.+++|.++|++||+++|+||++..+...|..+. ...+.-
T Consensus 171 ~l~~~l~~------~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a-~~~~gv---- 239 (395)
T PRK03715 171 SVEKLITD------KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFA-YELSGI---- 239 (395)
T ss_pred HHHHHcCC------CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhh-HhhcCC----
Confidence 88887753 566666664466677765 677899999999999999999999997544443211 111110
Q ss_pred CCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH-ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 046900 265 KDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR-MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRY 343 (442)
Q Consensus 265 ~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~-~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 343 (442)
.++ +.+++|.+| .|+.+|.+++. +.+...... ..+.+..++++.+++.+.|+.. ++ ....+.+++.-
T Consensus 240 -~PD----i~t~gK~lg-~G~p~~av~~~-~~i~~~~~~~~~~T~~g~pl~~aaala~L~~l---~~--~~l~~~~~~~g 307 (395)
T PRK03715 240 -EPD----IMTLGKGIG-GGVPLAALLAK-AEVAVFEAGDQGGTYNGNPLMTAVGVAVISQL---LA--PGFLEGVRARG 307 (395)
T ss_pred -CCc----eeeehhhhh-CCcceEEEEEc-cccccccCCCcCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHH
Confidence 112 357899998 78999999984 444422111 1222344666666555555421 11 12344455555
Q ss_pred HHHHHHHHh----CCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cC
Q 046900 344 QMIIEGLRS----AGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NM 418 (442)
Q Consensus 344 ~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~ 418 (442)
+++.+.|++ .++.... .-|+++-+++..... ....+.+..+.++ ||.+.+. ....+|++.. .+
T Consensus 308 ~~l~~~L~~l~~~~~i~~vr-G~Glm~~i~l~~~~~----~~~~~~~~~~~~~-Gi~~~~~------~~~~lR~~p~l~~ 375 (395)
T PRK03715 308 EYLKEKLLELSEERGLEGER-GEGLLRALLLGKDIG----PQIVEKARDMQPD-GLLLNAP------RPNLLRFMPALNV 375 (395)
T ss_pred HHHHHHHHHHhhcCCcCeEE-cceeEEEEEecCchH----HHHHHHHHhccCC-CEEEeec------CCCEEEEeCCccc
Confidence 555555543 3443233 345677777754100 0112223333333 9998652 1257999986 45
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 046900 419 SEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 419 ~~e~i~~~l~~l~~~l~~~ 437 (442)
+++++++++++|.+++.++
T Consensus 376 t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 376 TTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998753
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.4e-16 Score=164.34 Aligned_cols=308 Identities=14% Similarity=0.099 Sum_probs=191.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCC--cEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhh--hcCcEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLN--RIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRW--RTGIKIVP 171 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~--~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~--~~G~~v~~ 171 (442)
+.+.|+.||+|++ ++++ +|++|+|+|+++.+++.++ .++||.|++..-.|......... ..|+++..
T Consensus 80 ~e~aR~~ia~~lg--------a~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~ 151 (805)
T PLN02724 80 IESARQQVLEYFN--------APPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIA 151 (805)
T ss_pred HHHHHHHHHHHhC--------CCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEe
Confidence 5788888888876 4554 5899999999999999888 67899999987777765533221 36999999
Q ss_pred EecCC--------CCCCcCCHHHHHHHHHH----HHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhc-----Cc
Q 046900 172 IHCDS--------SNNFQITPQALEAAYKE----AESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK-----NI 234 (442)
Q Consensus 172 v~~~~--------~~~~~~d~~~l~~~l~~----~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~-----~~ 234 (442)
++++. .+...++.+.|++.++. ....+.++++|.++.-+|-||.++|.+.+..+.+.+..+ ++
T Consensus 152 v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~ 231 (805)
T PLN02724 152 VDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRW 231 (805)
T ss_pred ccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcce
Confidence 88762 11111222556655321 001123568899999999999999977554444433222 36
Q ss_pred EEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHHHccc-------
Q 046900 235 HLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARRMSS------- 306 (442)
Q Consensus 235 ~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~~~~------- 306 (442)
++++|.+++- +.....+..+..+ +++.|++|.+| ..| +|++++.++ +.+.+.....
T Consensus 232 ~v~vDaaQ~~----g~~piDv~~~~~D---------fl~~S~HK~~GgP~G--~G~L~vr~~-~~~~l~p~~~GGg~~~~ 295 (805)
T PLN02724 232 MVLLDAAKGC----GTSPPDLSRYPAD---------FVVVSFYKIFGYPTG--LGALLVRRD-AAKLLKKKYFGGGTVAA 295 (805)
T ss_pred EEEeehhhhc----CCCCCChhhcCCC---------EEEEecceeccCCCC--ceEEEEehh-hhhhhcCCccCCCceEE
Confidence 8999999873 3334455544333 67889999997 334 799988543 3333221100
Q ss_pred -------------------cCCCcHHHHHHHHHHhcCchhHHH-HHHHHHHHHHHHHHHHHHHHHhC-------CCeeec
Q 046900 307 -------------------FTLISSQTQYLLASMLSNKKFTEN-YIKTNRERLQKRYQMIIEGLRSA-------GIECLK 359 (442)
Q Consensus 307 -------------------~~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~ 359 (442)
.++.+.+...++.+.++ ++.+ .++...++..+..+++.+.|.++ +++++.
T Consensus 296 ~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~---~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg 372 (805)
T PLN02724 296 SIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFK---LLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYG 372 (805)
T ss_pred EecccceeeccccHHHHhcCCCcchhHHHHHHHHHH---HHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcC
Confidence 01222233333333332 2222 24556677777888888888765 355554
Q ss_pred CC---------ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC------------------------
Q 046900 360 GN---------AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS------------------------ 406 (442)
Q Consensus 360 ~~---------~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~------------------------ 406 (442)
+. ++ .+.+.+..... ... .......|+.++||.++.|..|.+.
T Consensus 373 ~~~~~~~~~~r~~-ivsFnv~~~~~-~~v--~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~ 448 (805)
T PLN02724 373 NHTFKLEFHIQGP-IVTFNLKRADG-SWV--GHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCW 448 (805)
T ss_pred CCCCCCCcccccC-EEEEEEEcCCC-CEe--CHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccC
Confidence 32 23 33334432110 000 1222445666679999998776421
Q ss_pred ---------CCCEEEEEeecC-CHHHHHHHHHHHHHHHH
Q 046900 407 ---------EPGWFRVCFANM-SEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 407 ---------~~~~iRls~~~~-~~e~i~~~l~~l~~~l~ 435 (442)
..|++|+|++.. +.+|++++++.|++.+.
T Consensus 449 ~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~ 487 (805)
T PLN02724 449 DDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFV 487 (805)
T ss_pred chhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence 138899999833 89999999999999664
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-15 Score=145.44 Aligned_cols=208 Identities=12% Similarity=0.107 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhH----hhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDL----RWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~~G~~v~~v 172 (442)
...|.+.+|+..+ .+..+++++++.|+..++.+++++||+|+++...|.+....+ + ..|+++..+
T Consensus 64 ~~~le~~la~LEg----------~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~-~~Gi~v~~v 132 (395)
T PRK08114 64 HFSLQEAMCELEG----------GAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILS-KLGVTTTWF 132 (395)
T ss_pred HHHHHHHHHHHhC----------CCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHH-hcCcEEEEE
Confidence 3566666666532 567888999999999999999999999999999997766554 4 379998887
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhc--CcEEEEeccCCcCCCCCC
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK--NIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~--~~~vi~De~y~~~~~~~~ 250 (442)
+. .|.+.+++++++ ++|+|++.+|+||+|.+.+ +++|+++|+++ ++++|+|.+++...
T Consensus 133 d~-------~d~~~l~~~l~~------~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~---- 192 (395)
T PRK08114 133 DP-------LIGADIAKLIQP------NTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGV---- 192 (395)
T ss_pred CC-------CCHHHHHHhcCC------CceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCcccc----
Confidence 63 367889988865 7899999999999999998 88888899898 49999999997422
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcc-cc-CCCcHHHHHHHHHHhcCchh
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMS-SF-TLISSQTQYLLASMLSNKKF 327 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~-~~-~~~s~~~q~~~~~~l~~~~~ 327 (442)
......+.. -+++.|.+|.++-+| .-.|.++. ++...+.++... .. ..+++...+.+..-++..
T Consensus 193 -~~~pl~~Ga---------Divv~S~tKyl~Ghsdv~~G~v~~-~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL-- 259 (395)
T PRK08114 193 -LFKALDFGI---------DISIQAGTKYLVGHSDAMIGTAVA-NARCWEQLRENSYLMGQMVDADTAYMTSRGLRTL-- 259 (395)
T ss_pred -ccCHHHcCC---------cEEEEcCcccccCCCcceeEEEEc-CHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCcH--
Confidence 223333433 388999999875454 67787766 444444333222 22 234555555555555442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 328 TENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
.-+.++..++...+.+.|+++
T Consensus 260 -----~lR~~~~~~na~~va~~L~~h 280 (395)
T PRK08114 260 -----GVRLRQHEESSLKVAEWLAEH 280 (395)
T ss_pred -----HHHHHHHHHHHHHHHHHHHcC
Confidence 333455566777888888875
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-15 Score=134.41 Aligned_cols=329 Identities=14% Similarity=0.179 Sum_probs=211.8
Q ss_pred eeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecCh
Q 046900 50 VIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGA 129 (442)
Q Consensus 50 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~ 129 (442)
.+||-+..-..|.+.+++.+.++.. .-.-|+.......|.+.+|+.+++. .-+++++|.
T Consensus 23 ~vDLRSDTvT~PTdeMr~am~eA~v------------gDdVyGeD~tt~rLE~~vA~l~GKE---------AgLFv~SGT 81 (384)
T KOG1368|consen 23 SVDLRSDTVTVPTDEMRRAMAEASV------------GDDVYGEDPTTNRLEQRVAELFGKE---------AGLFVPSGT 81 (384)
T ss_pred ccccccccccCChHHHHHHHhhccc------------CcccccCCccHHHHHHHHHHHhCcc---------ceeeecccc
Confidence 3577777666777777777666542 1233555455689999999988742 336777776
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCCcChHHh--HhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHH--hcCCceeEEE
Q 046900 130 TAANELLTFILADPGDALLVPTPYYPGFDRD--LRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAE--SKDMRVRGVL 205 (442)
Q Consensus 130 ~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~--~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~--~~~~~~~~v~ 205 (442)
..-+-.+...+-++|..|++.+-+|--..+. +....|+.+.++...+++ .+|+++++++++... -+.+.+++|+
T Consensus 82 mgNllaIm~Hc~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dg--tm~ledIe~~ir~~~GD~H~p~T~LIc 159 (384)
T KOG1368|consen 82 MGNLLAIMVHCHQRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDG--TMDLEDIEAAIRVPKGDCHMPPTKLIC 159 (384)
T ss_pred cccHHHHHHHhcCCCceEEeccchheeehhccChhhhccceeEeeeeCCCC--eeeHHHHHHhhcCCCCCccCCCceEEE
Confidence 6666556555666999999998877432221 121378888777655443 588999999997321 1245689999
Q ss_pred EeCCCCCCC-cCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC--CCcccHHHHHhhhcCCCCCcEEEEecCcccCCC
Q 046900 206 ITNPSNPLG-ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS--SEFVSIAEILEARQYKDSERVHIVYSLSKDLGL 282 (442)
Q Consensus 206 l~~P~NPtG-~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~--~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~ 282 (442)
+.|.+|-+| .++|.+++.++.++|++|++-+..|.+-. |+. ....++..+... .+.|- -.|||.+|.
T Consensus 160 lENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi---~NAavasgV~vk~i~~~-----fDSVs--iCLSKglgA 229 (384)
T KOG1368|consen 160 LENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI---FNAAVASGVPVKKICSA-----FDSVS--ICLSKGLGA 229 (384)
T ss_pred eeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhh---hhHHHHcCCCHHHHHHh-----hhhhh--hhhhccCCC
Confidence 999987666 99999999999999999999999999854 221 123456666554 23332 368999985
Q ss_pred CCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-Ceeec
Q 046900 283 PGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAG-IECLK 359 (442)
Q Consensus 283 ~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~ 359 (442)
| +|-++..+..+++..+.++.. +++-.....+++++..-.+ ... ..+.-.++...+.+.++..+ +++..
T Consensus 230 P---VGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~----~~~-~L~~dHk~A~~lAe~~~~~~~i~v~v 301 (384)
T KOG1368|consen 230 P---VGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDE----NVP-LLRADHKRAKELAEYINTPEEIRVEV 301 (384)
T ss_pred C---cccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhc----chH-HHHHHHHHHHHHHHHhccccceeeec
Confidence 4 788776677766665543332 2222222222223222111 112 22223345556667776654 77655
Q ss_pred C--CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHH
Q 046900 360 G--NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHN 432 (442)
Q Consensus 360 ~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~ 432 (442)
+ +.+ ++.+.+.... .++.++++.+.+ +||.+.+|..+ .+|+.+- .+++++++..+..+.+
T Consensus 302 ~a~etN-iv~~~l~q~~-----~~~~~l~~~~~k-~gi~lm~~~s~------r~Rivlh~Qvt~~~ve~~~~~~~k 364 (384)
T KOG1368|consen 302 PAVETN-IVNMVLCQAR-----LTAEELCKFLEK-NGILLMGGASR------RIRIVLHHQVTDEDVEYVKSVLSK 364 (384)
T ss_pred chhhcc-eeeeeccccc-----CCHHHHHHHHHH-CCeEEeecccc------ceEEEEEEecCHHHHHHHHHHHHH
Confidence 4 444 5555543221 147888988855 59999987543 4899986 5588999999988843
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-15 Score=141.13 Aligned_cols=340 Identities=15% Similarity=0.186 Sum_probs=211.6
Q ss_pred CCCCCceeeeecccccc----cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLAENQV----SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~~n~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+-.....||+..+-.++ .++.+.+.+.+.... -..|+.+ .++.-.+|+.+.++.. .
T Consensus 49 DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~------------G~~fg~P---te~Ei~~Aell~~~~p-----~ 108 (432)
T COG0001 49 DVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLER------------GLSFGAP---TELEVELAELLIERVP-----S 108 (432)
T ss_pred eCCCCEeeehhccCcccccCCCCHHHHHHHHHHHHh------------cCCCCCC---CHHHHHHHHHHHHhcC-----c
Confidence 34456778887765443 235566666655422 1345544 4667778888876533 3
Q ss_pred CCcEEEecChHHHHHHHHHhh--cCCCCeEEEcCCCCcChHHhHhhhcC--c-----------------EEEEEecCCCC
Q 046900 120 LNRIVVTAGATAANELLTFIL--ADPGDALLVPTPYYPGFDRDLRWRTG--I-----------------KIVPIHCDSSN 178 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~~G--~-----------------~v~~v~~~~~~ 178 (442)
.+.|-++|++|||...+++.. ....|+|+..+=||.+..+.+....| . .++.+|
T Consensus 109 ~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~----- 183 (432)
T COG0001 109 IEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLP----- 183 (432)
T ss_pred ccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEec-----
Confidence 489999999999999887654 12448899999999887766543232 1 111222
Q ss_pred CCcCCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCcCCCHHH-HHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHH
Q 046900 179 NFQITPQALEAAYKEAESKDMRVRGVLITNP-SNPLGATIQRSV-LEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIA 256 (442)
Q Consensus 179 ~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~~~~~~~-l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~ 256 (442)
|. |++.++++++++ +.++.+|++ -| ..-.|.+.|.++ ++.|.++|++|++++|.||+...|...-.......
T Consensus 184 -yN-D~~al~~~~~~~---g~~IAaVIv-EPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~ 257 (432)
T COG0001 184 -YN-DLEALEEAFEEY---GDDIAAVIV-EPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYY 257 (432)
T ss_pred -CC-CHHHHHHHHHHc---CCcEEEEEe-ccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCccccccc
Confidence 22 799999999874 345655544 45 333677665555 99999999999999999999887665422233444
Q ss_pred HHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc-----cCCCcHHHHHHHHHHhcCchhHHHH
Q 046900 257 EILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS-----FTLISSQTQYLLASMLSNKKFTENY 331 (442)
Q Consensus 257 ~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~-----~~~~s~~~q~~~~~~l~~~~~~~~~ 331 (442)
.+.++ +.+|.|..| .|+.+|.+.+ ..++.+.+..... ..+.++++..+..+.++... +
T Consensus 258 gi~PD-----------lttlGKiIG-GGlP~ga~gG-r~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~---~- 320 (432)
T COG0001 258 GVEPD-----------LTTLGKIIG-GGLPIGAFGG-RAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELM---T- 320 (432)
T ss_pred CcCcc-----------hhhhhhhhc-CCcceeeecc-HHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHH---h-
Confidence 44333 568999999 9999999988 5667665443221 13345666666555554211 0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hCCCeeec-CCceEEEEEecCCccc------ccChhhHHHHHHHHHHcCcEEEeCC
Q 046900 332 IKTNRERLQKRYQMIIEGLR----SAGIECLK-GNAGLFCWMNLSPLLE------EQTREGELALWDSMLHEVKLNISPG 400 (442)
Q Consensus 332 ~~~~~~~~~~~~~~l~~~L~----~~g~~~~~-~~~g~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~gi~v~pg 400 (442)
.....+++.+.-+.|.+.|+ ++|+++.. ..+++|-..-.+.... ..+.+.-..+...|+++ ||.+.|+
T Consensus 321 ~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~-GV~l~ps 399 (432)
T COG0001 321 EEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYLAPS 399 (432)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC-CcccCCc
Confidence 00123444444455555554 45777654 3344443322221110 11112245666788888 9999985
Q ss_pred CCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 401 SSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 401 ~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
. | .. .=+|.+. +++++++.++++.+++++...
T Consensus 400 ~-~----ea-~flS~ah-te~di~~~~~a~~~~~~~~~~ 431 (432)
T COG0001 400 Q-F----EA-GFLSTAH-TEEDIDRTLEAADEAFKELAG 431 (432)
T ss_pred c-c----cc-eeeeccc-CHHHHHHHHHHHHHHHHHhhc
Confidence 3 2 22 3378877 899999999999999887654
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.4e-15 Score=147.00 Aligned_cols=346 Identities=15% Similarity=0.096 Sum_probs=192.7
Q ss_pred ceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE---
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV--- 125 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~--- 125 (442)
..|+|-..||..+....+......... +..|. ....-|+...-+.++.+...+...+.++ ...+.+++
T Consensus 35 ~~l~liasen~~s~~v~~a~~s~~~~k--y~~G~---~g~r~~~G~~~~d~lE~~~~~~~~~~f~----~~~~~~~~nv~ 105 (475)
T PLN03226 35 KGLELIASENFTSRAVMEALGSCLTNK--YSEGL---PGARYYGGNEYIDQIETLCQKRALEAFR----LDPEKWGVNVQ 105 (475)
T ss_pred cCeeEecCCccCCHHHHHHHhhHHhcc--ccCCC---CCCcCcCCChhHHHHHHHHHHHHHHHhC----CCcceeEEecC
Confidence 457888889987754433322222111 00111 1112233333344444433333433333 33444433
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCC---CcChH---HhHhhhcCc----EEEEEecCCCCCCcCCHHHHHHHHHHHH
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPY---YPGFD---RDLRWRTGI----KIVPIHCDSSNNFQITPQALEAAYKEAE 195 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~---y~~~~---~~~~~~~G~----~v~~v~~~~~~~~~~d~~~l~~~l~~~~ 195 (442)
..+++.++..++.+|++|||+|+..+.. |.... ...+. .+. +++++.++.+ +..+|+++|++.+.+.
T Consensus 106 ~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~-s~~~~~~~~~~y~~~~~-~g~iD~d~Le~~l~~~- 182 (475)
T PLN03226 106 PLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKI-SATSIYFESMPYRLDES-TGLIDYDKLEKKAMLF- 182 (475)
T ss_pred cCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhccccc-ccceEEEEeeeeeecCC-CCCcCHHHHHHHHhhc-
Confidence 2566889999999999999999985532 22211 11111 122 2224444542 3568999999998753
Q ss_pred hcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEec
Q 046900 196 SKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275 (442)
Q Consensus 196 ~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S 275 (442)
++++|++ ..++ +|...+ +++|.++|+++|+++++|++|...........+... ..-++++|
T Consensus 183 ----~pklIv~-~~S~-~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~----------~~Div~~t 243 (475)
T PLN03226 183 ----RPKLIIA-GASA-YPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAASPFE----------YCDVVTTT 243 (475)
T ss_pred ----CCeEEEE-ecCc-CCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCC----------CCeEEEec
Confidence 5665544 3333 566666 667888899999999999999865543322111111 12377899
Q ss_pred CcccCCCCCceeEEEeecCHH-------------HHHHHHHccc--c-CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 046900 276 LSKDLGLPGFRVGTIYSYNDK-------------VVTTARRMSS--F-TLISSQTQYLLASMLSNKKFTENYIKTNRERL 339 (442)
Q Consensus 276 ~SK~~g~~G~RiG~i~~~~~~-------------~~~~~~~~~~--~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 339 (442)
++|++ .|.+.|++++++.. ..+.++.... + ++.++....++...++.. .....++.++++
T Consensus 244 ~hK~L--~GP~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i--~~~~~~~~~~~~ 319 (475)
T PLN03226 244 THKSL--RGPRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQA--MTPEFKAYQKQV 319 (475)
T ss_pred Ccccc--cCCCceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHH--hCcCHHHHHHHH
Confidence 99988 33344999884431 1112221111 2 222222222222333211 011134567888
Q ss_pred HHHHHHHHHHHHhCCCeeecCC-ceEEEEEecCC-cccccChhhHHHHHHHHHHcCcEEEeCCCCCCC---CCCCEEEEE
Q 046900 340 QKRYQMIIEGLRSAGIECLKGN-AGLFCWMNLSP-LLEEQTREGELALWDSMLHEVKLNISPGSSCHC---SEPGWFRVC 414 (442)
Q Consensus 340 ~~~~~~l~~~L~~~g~~~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~---~~~~~iRls 414 (442)
.++.++|.+.|.+.|+++..+. .+..+++++.. ... ..++... +++.||.+..+...+. -.+..+|++
T Consensus 320 ~~na~~L~~~L~~~G~~l~~~~t~~hi~lv~~~~~gi~------~~~~~~~-L~~~~I~~nk~~~p~~~~~~~~~giRiG 392 (475)
T PLN03226 320 KANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLT------GSRVEKV-LDLAHITLNKNAVPGDSSALVPGGVRIG 392 (475)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCCCCCEEEEEccCCCCC------HHHHHHH-HHHCCCEECCCCCCCCcccCCCCCcccC
Confidence 8889999999998999987632 23466677743 221 3344444 4566999986543221 123458985
Q ss_pred ee-----cCCHHHHHHHHHHHHHHHHH
Q 046900 415 FA-----NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 415 ~~-----~~~~e~i~~~l~~l~~~l~~ 436 (442)
.. .++++++++..+.|.++++.
T Consensus 393 t~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 393 TPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred cHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 43 34789999999999998873
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-15 Score=141.23 Aligned_cols=283 Identities=21% Similarity=0.220 Sum_probs=185.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---hcCcEEEEEe
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---RTGIKIVPIH 173 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~~G~~v~~v~ 173 (442)
...|.++++.+.+ .++.+.++++..||..++.+|+++||+|+++...|.+....+.. ..|+++.+++
T Consensus 65 ~~~lE~~~a~LEg----------~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d 134 (396)
T COG0626 65 RDALEEALAELEG----------GEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVD 134 (396)
T ss_pred HHHHHHHHHHhhC----------CCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEEC
Confidence 4677777777653 67799999999999999999999999999999999875544321 3888888776
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
.. +.+.+++++.+ +++|+|++..|+|||-.+.+ +.+|+++|+++|+++|+|..|+..++ .
T Consensus 135 ~~-------~~~~~~~~~~~-----~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~-----q 194 (396)
T COG0626 135 PG-------DDEALEAAIKE-----PNTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVL-----Q 194 (396)
T ss_pred CC-------ChHHHHHHhcc-----cCceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCcccccc-----c
Confidence 32 44566666542 27999999999999988877 88889999999999999999985332 2
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHH-Hcc-cc-CCCcHHHHHHHHHHhcCchhHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTAR-RMS-SF-TLISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~-~~~-~~-~~~s~~~q~~~~~~l~~~~~~~ 329 (442)
....+. --|+++|.+|.++-.+ .=.|.++++++.+.+.+. ... .. ..+++...+.+..-+++.
T Consensus 195 ~PL~~G---------aDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkTL---- 261 (396)
T COG0626 195 RPLELG---------ADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTL---- 261 (396)
T ss_pred ChhhcC---------CCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccchH----
Confidence 233333 3388999999985232 445767766777776652 222 23 345666666666666543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCe-eecC-----------------CceEEEEEecCCcccccChhhHHHHHHHHH
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSA-GIE-CLKG-----------------NAGLFCWMNLSPLLEEQTREGELALWDSML 390 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~-----------------~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~ 390 (442)
.-+.++..++...+.+.|++. .++ ++-| -|| .+.+++... +...++.+.|
T Consensus 262 ---~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg-~~Sf~l~~~------~~~~~f~~~L- 330 (396)
T COG0626 262 ---ALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGG-LFSFELKNE------EAAKKFLDSL- 330 (396)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCce-EEEEEeCCh------HHHHHHHHhC-
Confidence 233444556677788888775 222 2222 344 444565542 1244444443
Q ss_pred HcCcEEEeCCCCCCC---------------------CCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 391 HEVKLNISPGSSCHC---------------------SEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 391 ~~~gi~v~pg~~f~~---------------------~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
+--.+...-|..... -.++.+|||++. |+.+.+++-|.+++.+
T Consensus 331 ~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl---Ed~eDLi~Dl~~Al~~ 394 (396)
T COG0626 331 KLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGL---EDVEDLIADLEQALAK 394 (396)
T ss_pred CccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHHh
Confidence 221222233322110 124679999996 4566777777777765
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-15 Score=148.25 Aligned_cols=328 Identities=15% Similarity=0.123 Sum_probs=206.5
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCCccC---CCcEEEecChHHHHHHHHHhhcC-----------CCCeEEEcCCCCcC
Q 046900 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFD---LNRIVVTAGATAANELLTFILAD-----------PGDALLVPTPYYPG 156 (442)
Q Consensus 91 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~---~~~i~~t~G~~~ai~~~~~~l~~-----------~gd~Vl~~~p~y~~ 156 (442)
|....+..++.+.+.+|+.+.+|.+-... ...-++|+|+|+++..++.+..+ +.-.|++.+-+|..
T Consensus 114 ~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~S 193 (490)
T PLN02880 114 WITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSA 193 (490)
T ss_pred cccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHH
Confidence 33344678999999999999887321100 12477899999988766544321 11245567888999
Q ss_pred hHHhHhhhcCc---EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcC
Q 046900 157 FDRDLRWRTGI---KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKN 233 (442)
Q Consensus 157 ~~~~~~~~~G~---~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~ 233 (442)
+..++.. +|+ .++.||.+..+++.+|++.|+++|.+....|..+-+|+-+-.+.+||.+.| +++|+++|++||
T Consensus 194 v~Kaa~~-lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp---l~eI~~i~~~~~ 269 (490)
T PLN02880 194 LQKACQI-AGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP---LLELGKIAKSNG 269 (490)
T ss_pred HHHHHHH-cCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc---HHHHHHHHHHcC
Confidence 9999985 888 478899886667899999999999877666666666677777889999988 888889999999
Q ss_pred cEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHH-HHHHHHcccc-----
Q 046900 234 IHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKV-VTTARRMSSF----- 307 (442)
Q Consensus 234 ~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~-~~~~~~~~~~----- 307 (442)
+|+.+|.+|+.+....+. ........ ..---+..+++|.++ ....+|.++..+... ...+.....+
T Consensus 270 iwlHVDaA~gg~~~~~~~---~~~~l~gi----e~aDSit~d~HKwl~-~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~ 341 (490)
T PLN02880 270 MWFHVDAAYAGSACICPE---YRHYIDGV----EEADSFNMNAHKWFL-TNFDCSLLWVKDRNALIQSLSTNPEFLKNKA 341 (490)
T ss_pred CEEEEehhhHHHHHhCHH---HHHHhcCc----hhcCEEEECchhhcC-CCccEEEEEEeCHHHHHHHHccCHHHhcCcc
Confidence 999999999975432211 11111110 011135679999985 778899999865332 2222111100
Q ss_pred -----------CC--C-c---HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC-CceEEEEE
Q 046900 308 -----------TL--I-S---SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKG-NAGLFCWM 368 (442)
Q Consensus 308 -----------~~--~-s---~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~g~~~~~ 368 (442)
+. . . .+..++....+. .+.+.+..+..-+..+++.+.|++. ++++..+ ..+ .+.+
T Consensus 342 ~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G-----~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~-iv~F 415 (490)
T PLN02880 342 SQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYG-----VENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFS-LVCF 415 (490)
T ss_pred ccccCCCChhccCcCCCCcccHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceE-EEEE
Confidence 00 0 0 111111122222 2233444444446777888888765 7887654 444 4455
Q ss_pred ecCCc-ccccC-hhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecC--CHHHHHHHHHHHHHHHHHHHh
Q 046900 369 NLSPL-LEEQT-REGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANM--SEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 369 ~~~~~-~~~~~-~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~--~~e~i~~~l~~l~~~l~~~~~ 439 (442)
+++.. ..... ..-..++.++|.++..+.+.+.. + .+..++|+++.+. ++++++.+++.|.++.+++..
T Consensus 416 r~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~-~--~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~ 487 (490)
T PLN02880 416 RLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTV-L--SGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLG 487 (490)
T ss_pred EEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEE-E--CCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 65431 11000 00124566777776566666532 2 3457899998632 679999999999988776543
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-15 Score=147.42 Aligned_cols=359 Identities=14% Similarity=0.075 Sum_probs=201.0
Q ss_pred CCCCCCCCceeeeeccc--cccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCC
Q 046900 41 YEESTNPSGVIQMGLAE--NQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRA 116 (442)
Q Consensus 41 ~~~~~~~~~~i~l~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 116 (442)
|..+.....+||+..+- ..++ ++.+.+.+.++.... ..+.......+.+..+|+.+.+...
T Consensus 45 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~------------~~~~~~~~~~~~~~~la~~l~~~~p--- 109 (460)
T PRK06541 45 YIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTL------------AFFPLWSYAHPPAIELAERLAALAP--- 109 (460)
T ss_pred EEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhC------------cCccccccCCHHHHHHHHHHHHhCC---
Confidence 33345567788886542 3333 355555555443211 0011111123444556666654321
Q ss_pred ccCCCcEEEecChHHHHHHHHHhhcC--------CCCeEEEcCCCCcChHHhHhhhcCc------------EEEEEecCC
Q 046900 117 KFDLNRIVVTAGATAANELLTFILAD--------PGDALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCDS 176 (442)
Q Consensus 117 ~~~~~~i~~t~G~~~ai~~~~~~l~~--------~gd~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~~ 176 (442)
...+.+++++++++|++.+++.... ....|+...-+|.+....+....|. .+..+|...
T Consensus 110 -~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~ 188 (460)
T PRK06541 110 -GDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTN 188 (460)
T ss_pred -CCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCc
Confidence 1236899999999999988775421 1367888777777654322211111 122222211
Q ss_pred CCC---CcCC--------HHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCcCCC-HHHHHHHHHHHHhcCcEEEEeccCC
Q 046900 177 SNN---FQIT--------PQALEAAYKEAESKDMRVRGVLITNP-SNPLGATIQ-RSVLEELLDFATRKNIHLVSDEIYS 243 (442)
Q Consensus 177 ~~~---~~~d--------~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~~~~-~~~l~~l~~~~~~~~~~vi~De~y~ 243 (442)
... |.-+ ++.+++.+.+. +.+..+.++..| ++++|.+.+ .+-+++|.++|++||+++|.||++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~t 265 (460)
T PRK06541 189 FYRAPELGDDPEAFGRWAADRIEEAIEFE---GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVIC 265 (460)
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHHhc---CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence 000 1112 25566666431 123345566667 889998765 7779999999999999999999997
Q ss_pred cCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc-eeEEEeecCHHHHHHHHHc-c-----ccCCCcHHHHH
Q 046900 244 GSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF-RVGTIYSYNDKVVTTARRM-S-----SFTLISSQTQY 316 (442)
Q Consensus 244 ~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~-RiG~i~~~~~~~~~~~~~~-~-----~~~~~s~~~q~ 316 (442)
.+...+..+ ...... .... + -+|||.++ .|+ ++|++++ .+.+.+.+... . ..+..++++.+
T Consensus 266 GfGR~G~~~-a~~~~g------v~PD-i--vt~gK~l~-~G~~pigav~~-~~~i~~~~~~~~~~~~~~~T~~gnp~~~a 333 (460)
T PRK06541 266 AFGRLGEMF-GCERFG------YVPD-I--ITCAKGIT-SGYSPLGAMIA-SDRLFEPFLDGPTMFLHGYTFGGHPVSAA 333 (460)
T ss_pred CCCcCchhh-hhhhcC------CCCC-E--EEeccccc-CCccceeEEEE-cHHHHHHhhcCCCccccCCCCCCCHHHHH
Confidence 653333221 111111 0122 2 26899998 897 9999999 45555554321 1 12334566666
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCee--ecCCceEEEEEecCCcccc-cCh-----h--hHHHH
Q 046900 317 LLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIEC--LKGNAGLFCWMNLSPLLEE-QTR-----E--GELAL 385 (442)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~~~~~g~~~~~~~~~~~~~-~~~-----~--~~~~l 385 (442)
++.+.++.. .+ ....+.++++.+++.+.|+++ ...+ ....-|.++-+++...... ..+ . ....+
T Consensus 334 aala~l~~l---~~--~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~ 408 (460)
T PRK06541 334 VALANLDIF---ER--EGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFL 408 (460)
T ss_pred HHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHH
Confidence 555555421 11 134456666777777777664 2222 1223345666666321100 000 0 01246
Q ss_pred HHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 386 WDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 386 ~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
...|+++ ||.+.+.. .+...+||+.. .++++++++++++|.+++.+...|
T Consensus 409 ~~~l~~~-Gi~~~~~~----~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~~~ 459 (460)
T PRK06541 409 SPALFEA-GLYCRADD----RGDPVVQLAPPLISGQEEFDEIEQILRSVLTEAWAR 459 (460)
T ss_pred HHHHHhC-CeEEEecC----CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6777776 99998731 12357999987 449999999999999999876554
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-14 Score=141.74 Aligned_cols=290 Identities=13% Similarity=0.123 Sum_probs=194.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcE--EEecChHHHHHHHHHhh--cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRI--VVTAGATAANELLTFIL--ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i--~~t~G~~~ai~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v 172 (442)
..++.+.+.+++.+.+| ++++++ ++|+|+|+++...+... ..+++.|++++-.|+....+++. .|.+...+
T Consensus 63 ~~~~e~~~~~~~a~l~g----~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~-lg~~~~~V 137 (380)
T PRK02769 63 SFDFERDVMNFFAELFK----IPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARL-LRIKSRVI 137 (380)
T ss_pred hHHHHHHHHHHHHHHhC----CCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHH-cCCCCcee
Confidence 45677777777777665 455554 89999999987665433 24678999999999999999885 89988888
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcC---cEEEEeccCCcCCCCC
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKN---IHLVSDEIYSGSAFSS 249 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~---~~vi~De~y~~~~~~~ 249 (442)
+.++ ...+|+++|++.+.+. +.++.+|+++.++|+||.+.+ +++|.++|+++| +++++|.+++.+...-
T Consensus 138 ~~~~--~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~ 209 (380)
T PRK02769 138 TSLP--NGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPF 209 (380)
T ss_pred ccCC--CCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecc
Confidence 8875 4569999999999862 345888899999999999988 777788888998 7999999998644321
Q ss_pred CCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc---------cCCCc---HHHHHH
Q 046900 250 SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS---------FTLIS---SQTQYL 317 (442)
Q Consensus 250 ~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~---------~~~~s---~~~q~~ 317 (442)
.......++. .+-..+..|.+|.++ ....+|.++..++.+. .+..... .++-+ .+...+
T Consensus 210 ~~~~~~~d~~-------~~vDsis~s~HK~~~-~P~g~G~l~~r~~~~~-~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~ 280 (380)
T PRK02769 210 VNNPPPFSFA-------DGIDSIAISGHKFIG-SPMPCGIVLAKKKYVE-RISVDVDYIGSRDQTISGSRNGHTALLLWA 280 (380)
T ss_pred cCccccCCcc-------CCCCEEEECCcccCC-CCCCcEEEEEehhhhh-hcccCccccCCCCCCccCCCCcHHHHHHHH
Confidence 0000000010 022345679999876 4456899988654433 2211011 01111 233333
Q ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEE
Q 046900 318 LASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNI 397 (442)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v 397 (442)
+...+.. .-+++..+...+..+++.+.|++.|++.........+.++.+. . ++. + |..+
T Consensus 281 aL~~lg~-----~G~~~~~~~~~~la~~l~~~L~~~g~~~~~~p~~~~v~f~~~~---------~-~~~-----~-~w~l 339 (380)
T PRK02769 281 AIRSLGS-----KGLRQRVQHCLDMAQYAVDRLQANGIPAWRNPNSITVVFPCPS---------E-RIW-----K-KWHL 339 (380)
T ss_pred HHHHHCH-----HHHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCceEEEEcCCC---------H-HHH-----h-CeeE
Confidence 3333332 2356677778888889999998888887654444455555443 1 221 3 6666
Q ss_pred eCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 398 SPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 398 ~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
.+- ++++|+++. ..+.+.++++++.|...+..
T Consensus 340 ~~~-------~~~~hi~~~~~~~~~~~~~f~~dl~~~~~~ 372 (380)
T PRK02769 340 ATS-------GNQAHIITMPHHNKQQIDSLIDELIFDLKN 372 (380)
T ss_pred ccc-------CCEEEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 542 247999886 44788899999999887663
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-15 Score=143.56 Aligned_cols=170 Identities=22% Similarity=0.408 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD 175 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~ 175 (442)
..++.+++|+|++ ....+.++++|.|+.+++++| ..|||.|+++.-+|....+.+.. .|++++.+++|
T Consensus 36 v~~FE~~~ae~~G----------~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~-~Ga~PVFvDid 104 (374)
T COG0399 36 VRRFEQAFAEYLG----------VKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLL-VGAKPVFVDID 104 (374)
T ss_pred HHHHHHHHHHHhC----------CCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHH-cCCeEEEEecC
Confidence 4789999999976 677889999999999999966 58999999999999999998885 99999999998
Q ss_pred CCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC-CCCCCccc
Q 046900 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA-FSSSEFVS 254 (442)
Q Consensus 176 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~-~~~~~~~s 254 (442)
++ .|.+|++.+|++|++ ++|+|+.++ --|...+ +++|.++|++||++||+|.+++... |.++..-+
T Consensus 105 ~~-T~nid~~~ie~aIt~------~tKAIipVh---l~G~~~d---m~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt 171 (374)
T COG0399 105 PD-TLNIDPDLIEAAITP------RTKAIIPVH---LAGQPCD---MDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGS 171 (374)
T ss_pred Cc-ccCCCHHHHHHHccc------CCeEEEEeh---hccCCCC---HHHHHHHHHHcCCeEEEEcchhccCeecCccccc
Confidence 64 688999999999986 799998664 3454444 7788888889999999999988421 22221111
Q ss_pred HHHHHhhhcCCCCCcEEEEecC--cccCCCCCceeEEEeecCHHHHHHHHHcc
Q 046900 255 IAEILEARQYKDSERVHIVYSL--SKDLGLPGFRVGTIYSYNDKVVTTARRMS 305 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~--SK~~g~~G~RiG~i~~~~~~~~~~~~~~~ 305 (442)
+ + .+.+.|| +|.+. +| -.|.++++++++.+.++.++
T Consensus 172 ---~---------G-d~~~fSF~~~K~it-tg-EGGav~tnd~ela~k~~~lr 209 (374)
T COG0399 172 ---F---------G-DIGAFSFHATKNLT-TG-EGGAVVTNDEELAEKARSLR 209 (374)
T ss_pred ---c---------c-ceEEEEecCCCCcc-cc-CceEEEeCCHHHHHHHHHHH
Confidence 1 1 1344566 79887 66 77999998888888776543
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.7e-15 Score=135.37 Aligned_cols=348 Identities=14% Similarity=0.152 Sum_probs=220.6
Q ss_pred ceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecC
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAG 128 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G 128 (442)
..|+|=..||..+....+..-...... +.+| ++...-|+...-...+.+...+..++.+| ++--||-..+|
T Consensus 27 ~~ieLIASEN~~S~aV~~A~gS~ltnK--YAEG---yPgkRyYgGce~VD~vE~laierak~LFg----a~~anVQPhSG 97 (413)
T COG0112 27 EHIELIASENFTSPAVMEAQGSDLTNK--YAEG---YPGKRYYGGCEYVDEVEELAIERAKKLFG----AEYANVQPHSG 97 (413)
T ss_pred hceeeeeccccCCHHHHHHHhhhhhhc--cccC---CCCccccCCCeeHHHHHHHHHHHHHHHhC----CCccccCCCCc
Confidence 447887788876644333211111100 0011 12233455555556666667777777776 56678888887
Q ss_pred hHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhH-hh-hcC--cEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 129 ATAANELLTFILADPGDALLVPTPYYPGFDRDL-RW-RTG--IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 129 ~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~-~~-~~G--~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
++ |+..++.+|++|||+|+-.+-.+.++...- .. ..| .+++.++++.+ ...+|.|++++...+. ++|+|
T Consensus 98 s~-AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~e-t~~IDyD~~~k~a~e~-----kPK~i 170 (413)
T COG0112 98 SQ-ANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPE-TGLIDYDEVEKLAKEV-----KPKLI 170 (413)
T ss_pred hH-HHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccc-cCccCHHHHHHHHHHh-----CCCEE
Confidence 54 677788999999999998888777654321 10 122 47778888754 4579999999999875 88877
Q ss_pred EEeCCCCCCCcCCCHH-HHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 205 LITNPSNPLGATIQRS-VLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~-~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
+.- ++.|+.. +.+++.++|.+.|.++++|-+|....-.+..+++..... -++.+|.+|+| +
T Consensus 171 i~G------~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~A----------dvVTtTTHKTl--r 232 (413)
T COG0112 171 IAG------GSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHA----------DVVTTTTHKTL--R 232 (413)
T ss_pred EEC------ccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCcc----------ceEeCCcccCC--C
Confidence 763 3344333 377888888899999999999864332333333332221 26789999998 7
Q ss_pred CceeEEEeecCHHHHHHHHHccccCCCcHHHHH-HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC-C
Q 046900 284 GFRVGTIYSYNDKVVTTARRMSSFTLISSQTQY-LLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKG-N 361 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~ 361 (442)
|-|-|.|++.++++.+.+++...++..+.+... +++.+..-.+.++--.++..++..++.+.|.+.|.+.|+++... .
T Consensus 233 GPrGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGgT 312 (413)
T COG0112 233 GPRGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSGGT 312 (413)
T ss_pred CCCceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecCCc
Confidence 889999999767888888776555444333222 22222221122222235667778889999999999999998763 2
Q ss_pred ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe----CCCCCCCCCCCEEEEEeec-----CCHHHHHHHHHHHHH
Q 046900 362 AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS----PGSSCHCSEPGWFRVCFAN-----MSEQTLEVALKRIHN 432 (442)
Q Consensus 362 ~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~----pg~~f~~~~~~~iRls~~~-----~~~e~i~~~l~~l~~ 432 (442)
-+-.+.+++... . -..+.++.++++.||.+. |...-.+..+..|||+... +.++++++..+.|.+
T Consensus 313 dnHl~lVDl~~~-~-----~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~ 386 (413)
T COG0112 313 DNHLVLVDLRSK-G-----LTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIAD 386 (413)
T ss_pred cceEEEEEcccC-C-----CCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHH
Confidence 233456777631 1 023456677788899986 3221111123459998752 367888888888888
Q ss_pred HHHH
Q 046900 433 FMQK 436 (442)
Q Consensus 433 ~l~~ 436 (442)
++..
T Consensus 387 vl~~ 390 (413)
T COG0112 387 VLDG 390 (413)
T ss_pred HHhc
Confidence 8765
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-14 Score=142.88 Aligned_cols=362 Identities=12% Similarity=0.068 Sum_probs=200.9
Q ss_pred CCCCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|..+.....+||+..+. ..+ .++.+.+.+.++.... ...+.. .-..+.+..+|+.+.+....
T Consensus 31 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~-----------~~~~~~-~~~~~~~~~lae~L~~~~p~- 97 (442)
T TIGR00709 31 CWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSG-----------LPLHTL-DLTTPLKDAFIEALLNIIPK- 97 (442)
T ss_pred cEEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhc-----------cCcccc-ccCcHHHHHHHHHHHHhCCC-
Confidence 334445567788986553 323 3355555555443210 000000 01135666677777654220
Q ss_pred CccCCCc-EEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCc------------EEEEEecCCCCC-
Q 046900 116 AKFDLNR-IVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCDSSNN- 179 (442)
Q Consensus 116 ~~~~~~~-i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~~~~~- 179 (442)
...... +++++++++|++.+++... .....|+...-+|.+....+....|. .+..++......
T Consensus 98 -~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (442)
T TIGR00709 98 -RKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRC 176 (442)
T ss_pred -cCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccc
Confidence 001124 4556899999998877542 22357888888887765443311221 122222211100
Q ss_pred -CcC----CHHH----HHHHHHHHHhcCCceeEEEEeCCC-CCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC
Q 046900 180 -FQI----TPQA----LEAAYKEAESKDMRVRGVLITNPS-NPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS 249 (442)
Q Consensus 180 -~~~----d~~~----l~~~l~~~~~~~~~~~~v~l~~P~-NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~ 249 (442)
|.. +.+. +++.+.+......++.++++.... |+.....|.+-+++|.++|++||+++|.||++..|...+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG 256 (442)
T TIGR00709 177 PFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSG 256 (442)
T ss_pred cccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC
Confidence 110 1222 233332111112356666666544 444455788899999999999999999999999876666
Q ss_pred CCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHH-HccccCCCcHHHHHHHHHHhcCchhH
Q 046900 250 SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTAR-RMSSFTLISSQTQYLLASMLSNKKFT 328 (442)
Q Consensus 250 ~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~-~~~~~~~~s~~~q~~~~~~l~~~~~~ 328 (442)
. +.....+.- .+.++ ++||.++ .|+++|+++++++ +..... .....+..+++++.++.+.|+..+
T Consensus 257 ~-~~a~~~~gv------~PDiv---~~gK~l~-~G~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~-- 322 (442)
T TIGR00709 257 T-MFAFEHAGI------EPDFV---VMSKAVG-GGLPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWK-- 322 (442)
T ss_pred c-hhHHHHcCC------CCcEE---EEccccc-CCcccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHH--
Confidence 4 222222211 12222 3899998 5999999999544 422211 122335568888888888875321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----CCCeeecCCceEEEEEecCCcccc--------cChhhHHHHHHHHHHcCcEE
Q 046900 329 ENYIKTNRERLQKRYQMIIEGLRS----AGIECLKGNAGLFCWMNLSPLLEE--------QTREGELALWDSMLHEVKLN 396 (442)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~l~~~l~~~~gi~ 396 (442)
+ ....+.++++.+++.+.|++ +++......-|+++.+++...... ........+...++++ ||+
T Consensus 323 ~---~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl 398 (442)
T TIGR00709 323 D---DNLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFEN-GLL 398 (442)
T ss_pred h---cCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHC-CeE
Confidence 1 12333444455555555543 232222334566777777432100 0011245666777676 999
Q ss_pred EeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 397 ISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 397 v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+.++.. ....+|+..+ .+++++++++++++.+++.+.
T Consensus 399 ~~~~~~----~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~ 436 (442)
T TIGR00709 399 LETGGR----EGEVFRLLCPITIDQEECEEGISRFKQAVEEA 436 (442)
T ss_pred EeecCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 976432 2357898876 459999999999999998765
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.9e-15 Score=144.83 Aligned_cols=156 Identities=21% Similarity=0.315 Sum_probs=113.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH----hHhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR----DLRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~~G~~v~~v 172 (442)
...+++.+|++++ . ...|++++| +.++.+++.+++++||+|+++...|..... .+. ..|+++..+
T Consensus 71 ~~~le~~la~l~g--------~-~~~v~fsSG-~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~-~~Gi~v~~v 139 (437)
T PRK05613 71 VEALENRIASLEG--------G-VHAVAFASG-QAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLN-RLGIEVTFV 139 (437)
T ss_pred HHHHHHHHHHHhC--------C-CeEEEeCCH-HHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHH-hcCeEEEEE
Confidence 4566777777654 1 334555555 588888888888999999999999987642 334 489999988
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+ +. .|++.+++++++ ++++|++..|+||+|.+.+ +++|.++|+++|+++|+|.+++... ..
T Consensus 140 d-~~-----~d~e~l~~~l~~------~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~----~~ 200 (437)
T PRK05613 140 E-NP-----DDPESWQAAVQP------NTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAA----LV 200 (437)
T ss_pred C-CC-----CCHHHHHHhCCc------cCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCcccc----cc
Confidence 7 32 278999998875 7888998899999999888 7788888899999999999986422 11
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEee
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYS 292 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~ 292 (442)
....+ +--+++.|++|.++-.|--+|-+++
T Consensus 201 -~p~~~---------GaDivv~S~~K~l~G~gd~~gG~vv 230 (437)
T PRK05613 201 -RPLEL---------GADVVVASLTKFYTGNGSGLGGVLI 230 (437)
T ss_pred -ChHHh---------CCCEEEeeccceecCCCcceeEEEE
Confidence 22222 2237889999998755554554444
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-14 Score=143.64 Aligned_cols=329 Identities=15% Similarity=0.133 Sum_probs=208.7
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCcc---CCCcEEEecChHHHHHHHHHhhcC-----------CCCeEEEcCCCCc
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKF---DLNRIVVTAGATAANELLTFILAD-----------PGDALLVPTPYYP 155 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~---~~~~i~~t~G~~~ai~~~~~~l~~-----------~gd~Vl~~~p~y~ 155 (442)
.|....+..++.+.+.+|+.+.+|.+-.. ....-++++|+++++..++.+..+ +.-.|++.+.+|.
T Consensus 161 ~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~ 240 (539)
T PLN02590 161 TWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHS 240 (539)
T ss_pred CcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchH
Confidence 34445577899999999999998732110 013467889999988766544321 1125556788899
Q ss_pred ChHHhHhhhcCc---EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhc
Q 046900 156 GFDRDLRWRTGI---KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK 232 (442)
Q Consensus 156 ~~~~~~~~~~G~---~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~ 232 (442)
.+..++.. +|+ +++.||.+..+++.+|++.|+++|.+....+..+-+|+-+-.+.+||.+=+ +.+|.++|++|
T Consensus 241 Sv~KAa~i-lGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp---l~~Ia~i~~~~ 316 (539)
T PLN02590 241 SFRKACLI-GGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP---LVPLGNIAKKY 316 (539)
T ss_pred HHHHHHHH-cCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHh
Confidence 99999885 887 688999987667899999999999876666666666676777889999866 88889999999
Q ss_pred CcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHH-HHHHHHH---cc---
Q 046900 233 NIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDK-VVTTARR---MS--- 305 (442)
Q Consensus 233 ~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~-~~~~~~~---~~--- 305 (442)
++|+.+|.+|+.+..-.+. ...+.... ..--=+..+++|.+. ...-+|.++..++. +...+.. +.
T Consensus 317 g~WlHVDaA~GG~al~~~~---~r~~~~Gi----e~ADSit~D~HK~l~-~p~~cg~llvr~~~~l~~a~~~~~~YL~~~ 388 (539)
T PLN02590 317 GIWLHVDAAYAGNACICPE---YRKFIDGI----ENADSFNMNAHKWLF-ANQTCSPLWVKDRYSLIDALKTNPEYLEFK 388 (539)
T ss_pred CCeEEEecchhhhhhcChh---hHHHhcCC----ccCCEEEECchhhcC-cCcCEEEEEecCHHHHHHHhhcCHHHhCCc
Confidence 9999999999976532222 22222210 011123568999885 67889988886542 3222211 00
Q ss_pred --------cc----CCCc----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEEEE
Q 046900 306 --------SF----TLIS----SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWM 368 (442)
Q Consensus 306 --------~~----~~~s----~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~ 368 (442)
.+ ...+ .+..+.+...+. .+-+++..+..-+..+++.+.+++. ++++..+..-..+.+
T Consensus 389 ~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G-----~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcF 463 (539)
T PLN02590 389 VSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYG-----SENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCF 463 (539)
T ss_pred ccccccCCCccccCCCCCCchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEE
Confidence 00 0111 122222222222 2345666666777788888888776 688765433334444
Q ss_pred ecCC-ccccc-ChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecC--CHHHHHHHHHHHHHHHHHHH
Q 046900 369 NLSP-LLEEQ-TREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANM--SEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 369 ~~~~-~~~~~-~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~--~~e~i~~~l~~l~~~l~~~~ 438 (442)
+... ..... ...--.++.+++.+...+.+.+... .+..++|+++.+. ++++++.+++.|.+...++.
T Consensus 464 r~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~---~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~ 534 (539)
T PLN02590 464 RLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTAL---SGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFT 534 (539)
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEE---CCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4432 11100 0011346667776663444544322 3356899999732 78999999999998876653
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-14 Score=142.81 Aligned_cols=310 Identities=13% Similarity=0.101 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCc---------
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGI--------- 167 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~--------- 167 (442)
+....+|+.+.+.... -..+.+++++++++|++.+++... ...++|+...-+|.+....+....|.
T Consensus 97 ~~~~~lAe~L~~~~p~---~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~ 173 (441)
T PRK05769 97 EPAVELAERLVEIAPG---GFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFF 173 (441)
T ss_pred HHHHHHHHHHHHhCCC---CCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCC
Confidence 4556677777653210 013689999999999999876542 22367888888887765332211111
Q ss_pred ----EEEEEecCCCC--CCc-CC--------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHh
Q 046900 168 ----KIVPIHCDSSN--NFQ-IT--------PQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATR 231 (442)
Q Consensus 168 ----~v~~v~~~~~~--~~~-~d--------~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~ 231 (442)
.+..++..... .|. -+ .+.+++.+.+......++.+|++..-....|... +.+.+++|.++|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~ 253 (441)
T PRK05769 174 PLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADK 253 (441)
T ss_pred CCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHH
Confidence 12233321100 011 01 2234442211100123555555543355667755 56679999999999
Q ss_pred cCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH-ccccCCC
Q 046900 232 KNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR-MSSFTLI 310 (442)
Q Consensus 232 ~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~-~~~~~~~ 310 (442)
||+++|.||++..+...+..+ ....+.- ...++ +|||.+| .|+++|+++++ +.+...... ....+..
T Consensus 254 ~g~lli~DEv~tG~gr~G~~~-a~~~~gv------~pDiv---t~~K~l~-~G~p~gav~~~-~~i~~~~~~~~~~T~~g 321 (441)
T PRK05769 254 YGILLIDDEVQTGMGRTGKMF-AIEHFGV------EPDII---TLAKAIA-GGLPLGAVIGR-AELMFLPPGSHANTFGG 321 (441)
T ss_pred cCCEEEEechhhCCCccccee-hhhccCC------CCCEE---EEccccc-CCcccEEEEEe-hhhhhcCCCCCCCCCCc
Confidence 999999999999765444321 1111111 12222 5899998 89999999984 555443321 2222445
Q ss_pred cHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCceEEEEEecCCcccccChhhHHHHH
Q 046900 311 SSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA----GIECLKGNAGLFCWMNLSPLLEEQTREGELALW 386 (442)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~ 386 (442)
+++++.++.+.|+- +++ ...+.+++.-++|.+.|++. ++......-|+++-+.+..............+.
T Consensus 322 ~p~~~aaa~a~L~~---l~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~ 395 (441)
T PRK05769 322 NPVAAAAALATLEE---LEE---GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVL 395 (441)
T ss_pred CHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHH
Confidence 77787777777653 222 33444555555666655443 322222344567767664321111111245677
Q ss_pred HHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 387 DSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 387 ~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
..++++ ||++.+. +...+|++.. .++++++++++++|.+++.+
T Consensus 396 ~~~~~~-Gil~~~~------~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 396 YEAFKR-GLLLLGA------GKSAIRIIPPLIITEEEADIGLEILEEAIKE 439 (441)
T ss_pred HHHHhC-CcEEecC------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 777776 9998763 2356899876 45999999999999999875
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-14 Score=138.11 Aligned_cols=359 Identities=13% Similarity=0.120 Sum_probs=213.1
Q ss_pred CCCCCCCCCceeeeeccccc--c--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLAENQ--V--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~~n~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|..+...+.+|||..+.+. + .++.+.+.++.+..... .....|..+ +-..++|+.+.....
T Consensus 48 ~~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~--------h~~~~~~~~----e~~v~~ae~L~~~~p-- 113 (447)
T COG0160 48 AYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLN--------HTHTRDLYY----EPYVELAEKLTALAP-- 113 (447)
T ss_pred CEEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhh--------cccCCcccc----hhHHHHHHHHHHhCC--
Confidence 44445566788999875432 2 34555655555432210 011222222 445556666654321
Q ss_pred Ccc-CCCcEEEecChHHHHHHHHHhh--cCCCCeEEEcCCCCcChHH-hHhhhcC-------------cEEEEEecCCC-
Q 046900 116 AKF-DLNRIVVTAGATAANELLTFIL--ADPGDALLVPTPYYPGFDR-DLRWRTG-------------IKIVPIHCDSS- 177 (442)
Q Consensus 116 ~~~-~~~~i~~t~G~~~ai~~~~~~l--~~~gd~Vl~~~p~y~~~~~-~~~~~~G-------------~~v~~v~~~~~- 177 (442)
- ....+++++++++|++.+++.- ......|+...-+|.+-.. .+.+ .| -.++.+|....
T Consensus 114 --~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galsl-T~~~~~~~~~~~~~~~~v~~~Pyp~~y 190 (447)
T COG0160 114 --GSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSL-TGSKPPYKAGFGPLPPGVYHVPYPNPY 190 (447)
T ss_pred --cccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHh-ccCccccccCCCCCCCCeEEecCCccc
Confidence 2 3467999999999999988764 1233567777767655322 2211 11 12444443321
Q ss_pred -CCCcCC--------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCC
Q 046900 178 -NNFQIT--------PQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAF 247 (442)
Q Consensus 178 -~~~~~d--------~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~ 247 (442)
+.|..+ .+.++..+........++.++++..-+.-.|.+. |.+-++++.++|++||+++|+||+...+..
T Consensus 191 r~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GR 270 (447)
T COG0160 191 RCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGR 270 (447)
T ss_pred cCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 122221 3344554443333344566666665578888755 555699999999999999999999999877
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHH-HccccCCCcHHHHHHHHHHhcCch
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTAR-RMSSFTLISSQTQYLLASMLSNKK 326 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~-~~~~~~~~s~~~q~~~~~~l~~~~ 326 (442)
+|. +..+-...-. .. +-++||.+| .|+.+|.++. .+++.+... ....++..++++.+++.+.|+..+
T Consensus 271 TG~-~fa~E~~gv~------PD---ivt~aK~ig-~G~Pl~avv~-r~ei~~~~~g~~~~Tf~GNpva~Aaa~AvL~vie 338 (447)
T COG0160 271 TGK-MFAFEHFGVE------PD---IVTLAKSLG-GGLPLSAVVG-RAEIMDWPPGGHGGTFGGNPVACAAALAVLDVIE 338 (447)
T ss_pred ccc-chhhhhcCCC------CC---EEEeccccc-CCCceeEEec-cHHhcccCCcccCCCCCcCHHHHHHHHHHHHHHH
Confidence 773 3333322211 22 347899999 6999999999 566665322 333446678888887777776322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeec--CCceEEEEEecCCccc--ccChhhHHHHHHHHHHcCcEEEeCC
Q 046900 327 FTENYIKTNRERLQKRYQMIIEGLRSA--GIECLK--GNAGLFCWMNLSPLLE--EQTREGELALWDSMLHEVKLNISPG 400 (442)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~--~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~gi~v~pg 400 (442)
++ .+.++..+.-+++.+.|.++ ...++. -.-|+++-+++-.... ....+....++.+++++ |+.+..+
T Consensus 339 --~e---~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~-Glil~~~ 412 (447)
T COG0160 339 --EE---NLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFER-GLLLLTC 412 (447)
T ss_pred --Hc---cHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHc-CCEEecc
Confidence 11 22223333333444444332 112222 3456788888754321 12233567888898888 9988875
Q ss_pred CCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 401 SSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 401 ~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
..+ .+.+||... .+++++++++++.|.+++...
T Consensus 413 G~~----~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 413 GPH----GNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred CCC----CcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 433 467999886 558999999999999998764
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.9e-15 Score=142.80 Aligned_cols=206 Identities=14% Similarity=0.188 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH----HhHhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD----RDLRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~~G~~v~~v 172 (442)
..+|.+.++++.+ .+..+++++++.||.+++.+++++||+|+++.+.|.... ..+. ..|++++.+
T Consensus 66 ~~~lE~~la~leg----------~~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~-~~Gi~v~fv 134 (384)
T PRK06434 66 VQAFEEKYAVLEN----------AEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLK-TLGIHVDYI 134 (384)
T ss_pred HHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHH-hcCcEEEEE
Confidence 4567777777754 456788888889999999999999999999988776544 4445 489999999
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+.++.+.+.+++ .++++|++..|+|||+.+.+ +++|+++|++++ +++|.+++... .+.
T Consensus 135 d~~~~~~~~l~~--------------~~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~~-~~~-- 192 (384)
T PRK06434 135 DTDRLNSLDFDP--------------SNYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASPY-NQN-- 192 (384)
T ss_pred CCCChhheeecC--------------CCeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCcc-cCC--
Confidence 876433333321 16889999999999999866 888888888988 45699975322 121
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcc-ccC-CCcHHHHHHHHHHhcCchhHH
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMS-SFT-LISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~-~~~-~~s~~~q~~~~~~l~~~~~~~ 329 (442)
++ .. +-.+++.|.+|.++-+| .=.|.+++.++.+.+.++... ..+ ..++...+.+..-|+.
T Consensus 193 -pl-~~---------gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~t----- 256 (384)
T PRK06434 193 -PL-DL---------GADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKT----- 256 (384)
T ss_pred -ch-hc---------CCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCc-----
Confidence 22 12 22377899999996434 446777776666655554332 232 2344443433444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
+..+.++-.++...+.+.|+++
T Consensus 257 --L~~R~~r~~~~a~~~a~~L~~~ 278 (384)
T PRK06434 257 --LGLRMEKHNKNGMELARFLRDS 278 (384)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcC
Confidence 2333444456667777778765
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-14 Score=141.76 Aligned_cols=312 Identities=14% Similarity=0.104 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHHhCCCCccC-CCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCc--------
Q 046900 99 SFRQAMASFMEQIRGGRAKFD-LNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGI-------- 167 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~-~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~-------- 167 (442)
+....+|+.+.+... -. .+.|+++++++++++.+++... .....|+...-+|.+....+....+.
T Consensus 85 ~~~~~lae~L~~~~p----~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~ 160 (445)
T PRK08593 85 EPLVRLAKKLCELAP----GDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKY 160 (445)
T ss_pred HHHHHHHHHHHHhCC----CCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCC
Confidence 445556666654321 11 2579999999999999887532 12346777777777654322101121
Q ss_pred -----EEEEEecCCCCC--Cc-CCH-------HHHHHHHHHHHhcCCceeEEEEeCCCCCCCcC-CCHHHHHHHHHHHHh
Q 046900 168 -----KIVPIHCDSSNN--FQ-ITP-------QALEAAYKEAESKDMRVRGVLITNPSNPLGAT-IQRSVLEELLDFATR 231 (442)
Q Consensus 168 -----~v~~v~~~~~~~--~~-~d~-------~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~-~~~~~l~~l~~~~~~ 231 (442)
.+..+|...... +. .+. +.+++.+.+.. ...++.+|++....+..|.+ .+.+-+++|.++|++
T Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~ 239 (445)
T PRK08593 161 GPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYL-PADEVACIVIETIQGDGGLLEPVPGYFEALYKFCRE 239 (445)
T ss_pred CCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhc-CCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHH
Confidence 122233221100 00 111 33333332210 12356666666556777876 677789999999999
Q ss_pred cCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc--cccCC
Q 046900 232 KNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM--SSFTL 309 (442)
Q Consensus 232 ~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~--~~~~~ 309 (442)
||+++|.||++..+...+..+ ....+.- .++ +.+++|.+| .|+++|++++ ++.+.+.+... ...+.
T Consensus 240 ~g~llI~DEv~tg~GrtG~~~-a~~~~gv-----~pD----i~t~gK~l~-~G~p~gav~~-~~~i~~~~~~~~~~~T~~ 307 (445)
T PRK08593 240 HGILFAVDDIQQGLGRTGKWS-SISHFNI-----TPD----LMSFGKSLA-GGMPMSAIVG-RKEIMESLEAPAHLFTTG 307 (445)
T ss_pred cCCEEEEechhhCCCcCchHH-HHHhcCC-----CCC----Eeeeccccc-CCcccEEEEE-cHHHHhhhccCCCCCCCC
Confidence 999999999998764444211 1111110 122 347899998 8899999999 56666665421 12244
Q ss_pred CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh----CCCeeecCCceEEEEEecCCcc--cccChhhHH
Q 046900 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS----AGIECLKGNAGLFCWMNLSPLL--EEQTREGEL 383 (442)
Q Consensus 310 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~ 383 (442)
.++++.+++.+.|+... + ....++.++.-+++.+.|++ +.+......-|+++.+.+.... .........
T Consensus 308 ~~pl~~aaa~a~l~~l~---~--~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~ 382 (445)
T PRK08593 308 ANPVSCAAALATIDMIE---D--ESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAAL 382 (445)
T ss_pred CCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHH
Confidence 56777776666665321 1 11223333333344444433 3332223345556666653211 111112356
Q ss_pred HHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 384 ALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 384 ~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
.++..++++ ||.+.+. ....+|++.+ .+++++++++++++.+++.+...
T Consensus 383 ~~~~~~~~~-Gv~~~~~------~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~ 432 (445)
T PRK08593 383 KICNYCFEH-GVVIIAV------AGNVLRFQPPLVITYEQLDTALNTIEQAFTALEA 432 (445)
T ss_pred HHHHHHHHC-CeEEecc------CCCEEEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 778888776 9998763 1246898876 45999999999999999987654
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-14 Score=139.97 Aligned_cols=305 Identities=14% Similarity=0.095 Sum_probs=192.0
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCCccCC----CcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhH-----
Q 046900 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFDL----NRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDL----- 161 (442)
Q Consensus 91 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~----~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----- 161 (442)
|+......++.....+...+.++ ++. -||-.- +++.|+..++.+|++|||+|+..+..|.++....
T Consensus 186 y~G~~~iD~iE~la~era~~lF~----~~~~~~gaNVQp~-SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~ 260 (586)
T PLN02271 186 YTGNQYIDQIERLCCERALAAFG----LDSEKWGVNVQPY-SCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPG 260 (586)
T ss_pred CCCChhHHHHHHHHHHHHHHHhC----Ccccccccceeec-cHHHHHHHHHHHhcCCCCEEEEecCCCCCchhccccccc
Confidence 44444455666555666666655 333 466666 5567888888999999999999888777654321
Q ss_pred ----hhhcC--cEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcE
Q 046900 162 ----RWRTG--IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIH 235 (442)
Q Consensus 162 ----~~~~G--~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~ 235 (442)
. ..| +++++++++++ ...+|.+++++.... .++|+|++..-.|| ..++ ++++.++|+++|++
T Consensus 261 g~~vs-~sG~~~~~vpY~~d~~-~g~IDyd~lek~a~~-----~rPKLII~g~Sayp--r~~D---~~~i~eIAdevGA~ 328 (586)
T PLN02271 261 GKKVS-GASIFFESLPYKVNPQ-TGYIDYDKLEEKALD-----FRPKILICGGSSYP--REWD---YARFRQIADKCGAV 328 (586)
T ss_pred ccccc-cccceEEEEEcccccc-cCccCHHHHHHHhhh-----cCCeEEEECchhcc--CcCC---HHHHHHHHHHcCCE
Confidence 2 245 34555556543 345899999995544 28898887655677 4455 66778888899999
Q ss_pred EEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCH-------------------H
Q 046900 236 LVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYND-------------------K 296 (442)
Q Consensus 236 vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~-------------------~ 296 (442)
+++|.++......+..+.+... .--++.+|.+|++ .|-|.|.|+..+. .
T Consensus 329 LmvD~AH~aGLIa~g~~~sP~~----------~aDvvt~TTHKtL--rGPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d 396 (586)
T PLN02271 329 LMCDMAHISGLVAAKECVNPFD----------YCDIVTSTTHKSL--RGPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYD 396 (586)
T ss_pred EEEECcccccccccCcCCCCCc----------CCcEEEeCCcccC--CCCCceEEEecccccccccCCccccccccccHH
Confidence 9999999865544332222111 1226789999987 5667799888432 2
Q ss_pred HHHHHHHccccC-CCcHHH--HHHHHHHhc---CchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC-CceEEEEEe
Q 046900 297 VVTTARRMSSFT-LISSQT--QYLLASMLS---NKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKG-NAGLFCWMN 369 (442)
Q Consensus 297 ~~~~~~~~~~~~-~~s~~~--q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~g~~~~~~ 369 (442)
+.+.+.....++ ..++.. .++.+..+. ..+ .++..++..++.+.|.+.|.+.|+++... ..+..+|++
T Consensus 397 ~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~e-----fk~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTdnHlvLvD 471 (586)
T PLN02271 397 FEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPE-----YKAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWD 471 (586)
T ss_pred HHHHhhcccCCccccChhHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHHHHHHHHCCCeEeeCCCCcceeeec
Confidence 333343322221 122221 222222232 222 25667778889999999999999998652 334567888
Q ss_pred cCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC---CCCCEEEEEeec-----CCHHHHHHHHHHHHHHHH
Q 046900 370 LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC---SEPGWFRVCFAN-----MSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~---~~~~~iRls~~~-----~~~e~i~~~l~~l~~~l~ 435 (442)
+..... ....+++++++.||.+.--..++. ..++.|||+... +.++++++..+.|.++++
T Consensus 472 l~~~g~------~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 472 LTTLGL------TGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CcccCC------CHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 865311 234566777888998853322211 124569998753 356788887777777765
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-14 Score=142.59 Aligned_cols=349 Identities=12% Similarity=0.098 Sum_probs=200.5
Q ss_pred CCCCceeeeecc--cccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC
Q 046900 45 TNPSGVIQMGLA--ENQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120 (442)
Q Consensus 45 ~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 120 (442)
.....+||+..+ ...+ .++.+.+.+.+...... ....| -..+.+..+|+.+.+... -..
T Consensus 79 ~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~---------~~~~~----~~~~~~~~lae~L~~~~p----~~~ 141 (459)
T PRK11522 79 TQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQP---------LHSQE----LLDPLRAMLAKTLAALTP----GKL 141 (459)
T ss_pred CCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCc---------ccccc----cCCHHHHHHHHHHHHhCC----CCC
Confidence 345667887655 3333 23555555554432110 01111 123555566666654321 123
Q ss_pred CcEEEecChHHHHHHHHHhhcC----CC-CeEEEcCCCCcChHHhHhhhcCcEEEE---EecCCC---CCCcCCHHHHHH
Q 046900 121 NRIVVTAGATAANELLTFILAD----PG-DALLVPTPYYPGFDRDLRWRTGIKIVP---IHCDSS---NNFQITPQALEA 189 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~l~~----~g-d~Vl~~~p~y~~~~~~~~~~~G~~v~~---v~~~~~---~~~~~d~~~l~~ 189 (442)
+.+++++++++|++.+++.... +| ..|+...-+|.+....+....|-.... .|..+. -.| .|.+.+++
T Consensus 142 ~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~ 220 (459)
T PRK11522 142 KYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPF-GNIEAMRT 220 (459)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCC-CCHHHHHH
Confidence 5899999999999998875421 22 368888888877654332112211111 111100 001 16788888
Q ss_pred HHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCC
Q 046900 190 AYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSE 268 (442)
Q Consensus 190 ~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~ 268 (442)
.+++....+.++.++++..-....|.+. |.+-++++.++|++||+++|.||++..+...|..+ ......- .++
T Consensus 221 ~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~-a~e~~gv-----~PD 294 (459)
T PRK11522 221 ALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMF-ACEHENV-----QPD 294 (459)
T ss_pred HHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhh-hhhccCC-----CCC
Confidence 8865432234555555554466678765 55669999999999999999999997653333211 1111110 122
Q ss_pred cEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH----ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 046900 269 RVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR----MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRY 343 (442)
Q Consensus 269 ~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~----~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 343 (442)
+-+|+|.+| .| +.+|.+++ .+.+.+.+.. ..+.+..++++.+++.+.|+..+ + ....++.++.-
T Consensus 295 ----ivt~gK~lg-gG~~Pigav~~-~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~---~--~~l~~~~~~~g 363 (459)
T PRK11522 295 ----ILCLAKALG-GGVMPIGATIA-TEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLL---E--QNLPAQAEQKG 363 (459)
T ss_pred ----EEEechhhh-CCCccceeEEE-cHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHh---c--chHHHHHHHHH
Confidence 237899998 78 68999998 4555555421 12224446776666666655321 1 12233444444
Q ss_pred HHHHHHHHhC--CCe---eecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-c
Q 046900 344 QMIIEGLRSA--GIE---CLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-N 417 (442)
Q Consensus 344 ~~l~~~L~~~--g~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~ 417 (442)
+++.+.|+++ ... .....-|+++.+.+... +....++..|+++ ||.+.+.. .....+|+..+ .
T Consensus 364 ~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~------~~~~~i~~~l~~~-Gvl~~~~~----~~~~~lr~~Ppl~ 432 (459)
T PRK11522 364 DYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDN------EIGYNFASEMFRQ-RVLVAGTL----NNAKTIRIEPPLT 432 (459)
T ss_pred HHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCc------hHHHHHHHHHHHC-CeEEEecC----CCCCEEEEECCcc
Confidence 4555555443 111 11123466777777542 1245778888776 99997632 12467999886 4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 046900 418 MSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 418 ~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
++++++++++++|.+++.+..+
T Consensus 433 ~t~~~id~~l~~l~~~l~~~~~ 454 (459)
T PRK11522 433 LTIEQCEQVLKAARKALAAMRV 454 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999987654
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-14 Score=140.61 Aligned_cols=285 Identities=15% Similarity=0.166 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHHhCCCCcc-CCCcEEEecC-hHHHHHHHHHhhcCCCCeEEEcCCCCcC--hHHhHhhhcCcEEEEEec
Q 046900 99 SFRQAMASFMEQIRGGRAKF-DLNRIVVTAG-ATAANELLTFILADPGDALLVPTPYYPG--FDRDLRWRTGIKIVPIHC 174 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~-~~~~i~~t~G-~~~ai~~~~~~l~~~gd~Vl~~~p~y~~--~~~~~~~~~G~~v~~v~~ 174 (442)
++-+.+.+.+.+.++ . +..+|++++| +|.+++.++..++.+||++++..-+..+ +.+.++ +.|+ +..+..
T Consensus 37 ~~~~~~~~~l~~l~~----~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r~~~~a~-~~g~-~~~~~~ 110 (349)
T TIGR01364 37 AVANEAESDLRELLN----IPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKKAAKEAK-KYGV-VNVVAS 110 (349)
T ss_pred HHHHHHHHHHHHHhC----CCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHH-HhCC-cEEEec
Confidence 444444455554443 3 2346888877 9999999999999999999887766544 345566 4888 777665
Q ss_pred CCCCCC--cCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 175 DSSNNF--QITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 175 ~~~~~~--~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
++..+| .+|++.++. ..++++|.++...|.||+..+ ++++.+++++++|.+.+- +. ..
T Consensus 111 ~~~~~~~~~~~~~~~~~--------~~~~~~v~~th~ETstGv~~~--------~l~~~~~~l~iVDavss~---g~-~~ 170 (349)
T TIGR01364 111 GKEGNYTKIPDPSTWEI--------SEDAAYVHYCANETIHGVEFR--------ELPDVKNAPLVADMSSNI---LS-RP 170 (349)
T ss_pred cccCCCCCCCCHHhcCC--------CCCCCEEEEcCCCCcccEecc--------eecccCCCeEEEEccccc---cC-cc
Confidence 432222 244554442 137889999999999999875 455578999999999873 33 23
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--------------ccccCCCcHHHHHHH
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--------------MSSFTLISSQTQYLL 318 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--------------~~~~~~~s~~~q~~~ 318 (442)
..+.++ + +++.|..|.+|.|| +|+++++++.+ +.+.. ...+++.+.....++
T Consensus 171 id~~~~---------d--~~~~ssqK~lgP~G--lg~l~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al 236 (349)
T TIGR01364 171 IDVSKF---------G--LIYAGAQKNIGPAG--LTVVIVRKDLL-GRASRITPSMLNYKIHAENDSMYNTPPTFAIYVS 236 (349)
T ss_pred CCHHHc---------c--EEEEecccccCCCc--eEEEEECHHHH-hhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHH
Confidence 333322 3 67889999999777 68888854433 22211 111233344444444
Q ss_pred HHHhcCchhHHH--HHHHHHHHHHHHHHHHHHHHHhC-CCeeec--C--CceEEEEEecCCcccccChhhHHHHHHHHHH
Q 046900 319 ASMLSNKKFTEN--YIKTNRERLQKRYQMIIEGLRSA-GIECLK--G--NAGLFCWMNLSPLLEEQTREGELALWDSMLH 391 (442)
Q Consensus 319 ~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 391 (442)
.++|+ ++.+ -++.+.++.++..+++.+.|++. |+.... + ..+..+.+.++.. ....++...+.+
T Consensus 237 ~~al~---~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~------~~~~~~~~~~~~ 307 (349)
T TIGR01364 237 GLVFK---WLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE------ELEKRFLKEAEE 307 (349)
T ss_pred HHHHH---HHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCCh------hHhHHHHHHHHH
Confidence 44444 3333 26778888889999999999988 553331 1 2323455555542 012455455545
Q ss_pred cCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 392 EVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 392 ~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+ |+.+.+|.. ..+.+|+|+. ..+.|+++.+++.|+++++++
T Consensus 308 ~-Gi~~~~~~~----~~g~vRvS~~~~nt~edid~l~~al~~~~~~~ 349 (349)
T TIGR01364 308 R-GLVSLKGHR----SVGGMRASIYNAMPLEGVQALVDFMKEFQKKH 349 (349)
T ss_pred C-CCcccCCcc----ccCeeEEECcCCCCHHHHHHHHHHHHHHHHhC
Confidence 5 998777754 2368999986 237999999999999987653
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.2e-15 Score=141.08 Aligned_cols=338 Identities=16% Similarity=0.164 Sum_probs=183.9
Q ss_pred ceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC----cEE
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN----RIV 124 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~----~i~ 124 (442)
.-|+|-..||..++ .+.+.+....... +.+| +.....|+...-..++.+...+...+.++ ++++ +|-
T Consensus 21 ~~l~LiaSEN~~Sp-~v~~al~S~l~nk-yaeg---~pg~ryy~G~~~id~iE~la~~ra~~lF~----~~~~~w~anvq 91 (399)
T PF00464_consen 21 STLNLIASENYMSP-AVREALGSDLTNK-YAEG---YPGKRYYGGCEYIDEIEELAIERAKELFG----AEPKEWYANVQ 91 (399)
T ss_dssp HSEE-CTT-----H-HHHHHHTSGGGGS--TTE---ETTEESSSSTHHHHHHHHHHHHHHHHHHT-----STTTEEEE--
T ss_pred cCccccCcccccCH-HHHHHhCCcceee-cccc---CCCcccccCcchhhHHHHHHHHHHHHHhC----CCcccceEEee
Confidence 34788888887754 3333333221100 0011 11112344444455666666677777766 4533 344
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh-----H-----hhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHH
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRD-----L-----RWRTGIKIVPIHCDSSNNFQITPQALEAAYKEA 194 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~-----~-----~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~ 194 (442)
.- +++.|+..++.+|++|||+|+..++...++... . . ....++++++++++ ...+|.|++++.++++
T Consensus 92 p~-SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~-~~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~ 168 (399)
T PF00464_consen 92 PH-SGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISAS-GLYFESVPYPVDPD-TGLIDYDELEKLAKEH 168 (399)
T ss_dssp -S-SHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHH-HHHSEEEEEEB-TT-TSSB-HHHHHHHHHHH
T ss_pred cC-CchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccc-cceEEEEeeeeecC-CCeECHHHHHHHHhhc
Confidence 44 456788999999999999999988877654321 1 1 13468889998854 4689999999999886
Q ss_pred HhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEe
Q 046900 195 ESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVY 274 (442)
Q Consensus 195 ~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~ 274 (442)
++|+|++..-++|- .-+.+++.++|.+.|.+++.|-+|......+..+.+.... . -++.+
T Consensus 169 -----kPklIi~G~S~y~~-----~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~-A---------Dvvt~ 228 (399)
T PF00464_consen 169 -----KPKLIICGASSYPR-----PIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY-A---------DVVTG 228 (399)
T ss_dssp -------SEEEEE-SSTSS--------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT-S---------SEEEE
T ss_pred -----CCCEEEECchhccC-----ccCHHHHHHHHHhcCcEEEecccccccceehheecCcccc-c---------eEEEe
Confidence 88887775333332 1237888888989999999999986422223233332222 1 27789
Q ss_pred cCcccCCCCCceeEEEeec-------------CHHHHHHHHHccccCCCc-HHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 046900 275 SLSKDLGLPGFRVGTIYSY-------------NDKVVTTARRMSSFTLIS-SQTQYLLASMLSNKKFTENYIKTNRERLQ 340 (442)
Q Consensus 275 S~SK~~g~~G~RiG~i~~~-------------~~~~~~~~~~~~~~~~~s-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 340 (442)
|.+|+| +|-|.|.|++. ++.+.+.+.+...++..+ +....+++.++.-.+......++..++..
T Consensus 229 sThKtl--~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv 306 (399)
T PF00464_consen 229 STHKTL--RGPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVV 306 (399)
T ss_dssp ESSGGG---SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred eccccc--cccCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 999998 88999999995 377888877655443222 22211111111111111222356777888
Q ss_pred HHHHHHHHHHHhCCCeeec-CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe----CCCCCCCCCCCEEEEEe
Q 046900 341 KRYQMIIEGLRSAGIECLK-GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS----PGSSCHCSEPGWFRVCF 415 (442)
Q Consensus 341 ~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~----pg~~f~~~~~~~iRls~ 415 (442)
++.+.|.+.|.+.|+++.. ...+..+|+++..... ....+...+++.||.+. |+.. .+..+..+||+.
T Consensus 307 ~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~------~g~~a~~~Le~~gI~vnkn~iP~d~-~~~~~sGlRlGT 379 (399)
T PF00464_consen 307 KNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGI------DGKEAEKALEEAGIIVNKNTIPGDR-SPFVPSGLRLGT 379 (399)
T ss_dssp HHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-------HHHHHHHHHHTTEE-EEE--TTTS-TTTT-SEEEEES
T ss_pred HHHHHHHHHHhhCCcEEEECCCCCCeEEEEeccccc------chHHHHHHHHhcCeeecccccCCCC-CCCCCCEEEECC
Confidence 8999999999999999874 3334577888865211 22335566678899986 4331 111235699997
Q ss_pred ec-----CCHHHHHHHH
Q 046900 416 AN-----MSEQTLEVAL 427 (442)
Q Consensus 416 ~~-----~~~e~i~~~l 427 (442)
.. +.++++++.-
T Consensus 380 ~~lT~rG~~e~dm~~iA 396 (399)
T PF00464_consen 380 PALTRRGMKEEDMKEIA 396 (399)
T ss_dssp HHHHHTT--HHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHH
Confidence 53 3455555543
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-14 Score=140.47 Aligned_cols=346 Identities=11% Similarity=0.070 Sum_probs=195.2
Q ss_pred CCCCCceeeeecc--cccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLA--ENQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+||+..+ ...+ +++.+.+.+.++.... .....|. ..+.+..+|+.+.+... -.
T Consensus 71 D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l---------~~~~~~~----~~~~~~~lAe~L~~~~p----~~ 133 (442)
T TIGR03372 71 DTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQ---------PLHSQEL----LDPLRALLAKTLAALTP----GK 133 (442)
T ss_pred ECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhC---------CCccccc----CCHHHHHHHHHHHHhCC----CC
Confidence 3445677888655 3333 3355555555443211 0011121 13445556666654321 12
Q ss_pred CCcEEEecChHHHHHHHHHhhcC-----CCCeEEEcCCCCcChHHhHhhhcCcEEE---EEecCCCCC--CcCCHHHHHH
Q 046900 120 LNRIVVTAGATAANELLTFILAD-----PGDALLVPTPYYPGFDRDLRWRTGIKIV---PIHCDSSNN--FQITPQALEA 189 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~-----~gd~Vl~~~p~y~~~~~~~~~~~G~~v~---~v~~~~~~~--~~~d~~~l~~ 189 (442)
.+.+++++++++|++.+++.... ....|+...-+|.+....+....|-... ..|+.+.-. --.|.+.+++
T Consensus 134 ~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~ 213 (442)
T TIGR03372 134 LKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLK 213 (442)
T ss_pred cCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHH
Confidence 25799999999999998875422 2357888888887765433211221100 111110000 0025677877
Q ss_pred HHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCC
Q 046900 190 AYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSE 268 (442)
Q Consensus 190 ~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~ 268 (442)
.+++....+.++.++++..-....|... +.+-++++.++|++||+++|.||++..+...|. ........- .++
T Consensus 214 ~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~a~e~~gv-----~PD 287 (442)
T TIGR03372 214 ALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGK-MFACEHEGV-----QPD 287 (442)
T ss_pred HHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcccc-chhhhhcCC-----CCC
Confidence 7764322334565656554456667765 566699999999999999999999976543343 111111111 122
Q ss_pred cEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH----ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 046900 269 RVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR----MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRY 343 (442)
Q Consensus 269 ~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~----~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 343 (442)
+-+|+|.+| .| +.+|.+++ .+.+.+.+.. +.+.+..++++.+++.+.|+-.+ ++ ...+..++.-
T Consensus 288 ----ivt~gK~lg-~G~~Pigavv~-~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~--~~---~l~~~~~~~G 356 (442)
T TIGR03372 288 ----ILCLAKALG-GGVMPIGATIA-TEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELL--EK---NLPAQAAIKG 356 (442)
T ss_pred ----eeeehhhhc-CCcccceEEEe-cHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHH--hc---cHHHHHHHHH
Confidence 235899998 78 68999998 4666665531 12234456777776666665211 11 1122233333
Q ss_pred HHHHHHHHh----CC-CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-c
Q 046900 344 QMIIEGLRS----AG-IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-N 417 (442)
Q Consensus 344 ~~l~~~L~~----~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~ 417 (442)
+++.+.|++ +. .-.....-|+++.+++... .....++..|+++ ||++.+... ....+|+... .
T Consensus 357 ~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel~~~------~~~~~i~~~l~~~-Gvl~~~~~~----~~~~lr~~Ppl~ 425 (442)
T TIGR03372 357 DFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDN------EIGYAFAKELFQQ-NILVAGTLN----NAKSIRIEPPLT 425 (442)
T ss_pred HHHHHHHHHHHHhCCCceEEEecceEEEEEEeCCh------HHHHHHHHHHHHC-CcEEeecCC----CCCEEEEECCcc
Confidence 344444433 22 1111124567888887542 1246788888776 999975311 2357999886 4
Q ss_pred CCHHHHHHHHHHHHHHH
Q 046900 418 MSEQTLEVALKRIHNFM 434 (442)
Q Consensus 418 ~~~e~i~~~l~~l~~~l 434 (442)
++++++++++++|.+.+
T Consensus 426 ~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 426 ITIEQCALVIKAAKDAL 442 (442)
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 59999999999998763
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-14 Score=137.68 Aligned_cols=287 Identities=13% Similarity=0.092 Sum_probs=188.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcE--EEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCcEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRI--VVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGIKIVP 171 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i--~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~ 171 (442)
...++.+.+.+++.+.+| ++++++ ++|+|+|+++..++.+.. .++..|+++.-.|..+..+++. +|.++..
T Consensus 63 ~a~~~e~~v~~~ia~llg----~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~-lg~~~~~ 137 (374)
T PLN03032 63 HSRQFEVGVLDWFARLWE----LEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARM-YRMEAVK 137 (374)
T ss_pred cHHHHHHHHHHHHHHHhC----CCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHH-cCCCCeE
Confidence 447788888888887766 567776 999999999988776543 2456888999999999999885 8998889
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcC-----cEEEEeccCCcCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKN-----IHLVSDEIYSGSA 246 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~-----~~vi~De~y~~~~ 246 (442)
||.+.+ ..+|+++|++.+++. ..++.+++++..+|+||.+-+ +++|+++|++++ +++.+|.+|+.+.
T Consensus 138 V~~d~~--g~id~~~L~~~i~~~---~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~ 209 (374)
T PLN03032 138 VPTLPS--GEIDYDDLERALAKN---RDKPAILNVNIGTTVKGAVDD---LDRILRILKELGYTEDRFYIHCDGALFGLM 209 (374)
T ss_pred eeeCCC--CcCcHHHHHHHHHHc---CCCCEEEEEEecCcCCccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhhh
Confidence 998764 469999999999752 124667777788999999977 777788888886 5899999997532
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc-------CCCc-----HHH
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF-------TLIS-----SQT 314 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~-------~~~s-----~~~ 314 (442)
..-....+...+. .+-.-+.-|.+|.+| ....+|.++..++.+ ..+.....+ ...| .+.
T Consensus 210 ~p~~~~~~~~~~~-------~~vDSis~s~HK~~g-~P~g~G~ll~r~~~~-~~~~~~~~Yl~~~d~ti~gSR~g~~~l~ 280 (374)
T PLN03032 210 MPFVSRAPEVTFR-------KPIGSVSVSGHKFLG-CPMPCGVALTRKKHV-KALSQNVEYLNSRDATIMGSRNGHAPLY 280 (374)
T ss_pred hhccCCCcccCCC-------cCCcEEEECcccccC-CCcCeEEEEEEchhh-HhhccCCcccCCCCCcccCCCchHHHHH
Confidence 2100000000010 012234569999887 446689999865443 333221111 1112 223
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeee-cCCceEEEEEecCCcccccChhhHHHHHHHHHHcC
Q 046900 315 QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECL-KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEV 393 (442)
Q Consensus 315 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 393 (442)
.++....+. .+-++++.+...+..+++.+.|++.++++. .|... .+.+..+. ... + .+
T Consensus 281 ~w~~l~~~G-----~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p~~~-~V~f~~~~---------~~~----~-~~- 339 (374)
T PLN03032 281 LWYTLRRKG-----YRGIKRDVQHCMRNAHYLKDRLTEAGLTCRLNELSS-TVVFERPM---------DEA----F-IK- 339 (374)
T ss_pred HHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEECCCce-EEEEcCCC---------cHh----H-hh-
Confidence 333333232 233566777778888899999988888764 45544 45444442 111 2 23
Q ss_pred cEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHH
Q 046900 394 KLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHN 432 (442)
Q Consensus 394 gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~ 432 (442)
|..+.+- +.++|+++. ..+.+.++++++.|++
T Consensus 340 ~w~l~~~-------~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 340 KWQLACE-------GDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred eeeeccc-------CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 6666541 247999886 3477888888888765
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-14 Score=140.77 Aligned_cols=311 Identities=12% Similarity=0.082 Sum_probs=198.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCccC-C-CcEEE--ecChHHHHHHHHHhhc--------CCC-----CeEEEcCCCCcChHH
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFD-L-NRIVV--TAGATAANELLTFILA--------DPG-----DALLVPTPYYPGFDR 159 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~-~-~~i~~--t~G~~~ai~~~~~~l~--------~~g-----d~Vl~~~p~y~~~~~ 159 (442)
..++.+.+.+++.+.+| ++ + +++.. |+|+|+++..++.+.. ..| ..|+++.-.|..+..
T Consensus 78 ~~~le~~~~~~la~llg----~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~k 153 (431)
T TIGR01788 78 TAEIENRCVNMLADLWH----APAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEK 153 (431)
T ss_pred HHHHHHHHHHHHHHHhC----CCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHH
Confidence 35788888888888766 44 2 45544 8999999998875542 111 368889999999999
Q ss_pred hHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhc------C
Q 046900 160 DLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK------N 233 (442)
Q Consensus 160 ~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~------~ 233 (442)
+++. .|+++..+|.++ +++.+|++.|++++.+ ++.+|+++..+|.||.+.| +++|+++|+++ +
T Consensus 154 a~~~-lg~~v~~i~~d~-~~~~vd~~~L~~~i~~------~t~lV~~t~g~t~tG~idp---i~~I~~i~~~~~~~~~~~ 222 (431)
T TIGR01788 154 FARY-FDVELREVPMDP-GRYVIDPEQVVEAVDE------NTIGVVCILGTTYTGEYED---VKALNDALDEYNAKTGWD 222 (431)
T ss_pred HHHH-cCceeEEEecCC-CceeeCHHHHHHHHhh------CCeEEEEEeCCCCCcccCC---HHHHHHHHHHHHhhhCCC
Confidence 9885 899999999986 4467999999999976 7788888999999999998 77778888899 9
Q ss_pred cEEEEeccCCcCCC---CCCCcccHHHHHhhhcCCCCCcEEEEecCcccC-CCCCceeEEEeecCHH-HHHHHHHcccc-
Q 046900 234 IHLVSDEIYSGSAF---SSSEFVSIAEILEARQYKDSERVHIVYSLSKDL-GLPGFRVGTIYSYNDK-VVTTARRMSSF- 307 (442)
Q Consensus 234 ~~vi~De~y~~~~~---~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~G~RiG~i~~~~~~-~~~~~~~~~~~- 307 (442)
+++.+|.+|+.+.. .+..... +. ...---+.-|.+|.+ +..| +|.++..++. +...+.....+
T Consensus 223 ~~~HvDaaq~g~~~p~~~~~~~~~---~~------~~~~DSis~s~HK~~~~P~g--~G~l~~r~~~~l~~~~~~~~~yl 291 (431)
T TIGR01788 223 IPIHVDAASGGFIAPFVYPDLEWD---FR------LPRVKSINVSGHKYGLVYPG--VGWVIWRDEEALPEELIFHVNYL 291 (431)
T ss_pred ceEEEecccHHHHHHHhCCCchhh---cC------CCCceEEEECchhccCCCCC--cEEEEEeChHHcchhheeccccc
Confidence 99999999995331 1111111 10 012223567999975 5444 7988885543 22222111001
Q ss_pred --------CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC--CceEEEEEecCCcccc
Q 046900 308 --------TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKG--NAGLFCWMNLSPLLEE 376 (442)
Q Consensus 308 --------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~--~~g~~~~~~~~~~~~~ 376 (442)
...+...-.++..++.-..+...-+.+..++..+..+++.+.|++. ++++..+ ..+ .+.+++.....
T Consensus 292 ~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~-iV~Fr~~~~~~- 369 (431)
T TIGR01788 292 GGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIP-LVAFKLKDDAD- 369 (431)
T ss_pred CCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCce-EEEEEeCCCCC-
Confidence 0112111112222221000112335666777788888999999887 5887754 455 44445543110
Q ss_pred cChhhHHHHHHHHHHcCcEEEeCCCCCC-CCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 377 QTREGELALWDSMLHEVKLNISPGSSCH-CSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 377 ~~~~~~~~l~~~l~~~~gi~v~pg~~f~-~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.. .+..++.+.|.++ |+.+.....-. ..+..++|+++. ..+++.++.+++.|++++..+
T Consensus 370 ~~-~~~~~l~~~L~~~-G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 370 PG-YTLYDLSHRLRER-GWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred CC-cCHHHHHHHHHHC-CCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 00 1246777877665 98754322100 122346899885 347889999999999988754
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.68 E-value=7e-15 Score=142.76 Aligned_cols=280 Identities=14% Similarity=0.202 Sum_probs=175.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCcc-CCCcEEEecC-hHHHHHHHHHhhcC---CCCeEEEcCCCCcChHHhHhhhcCcEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKF-DLNRIVVTAG-ATAANELLTFILAD---PGDALLVPTPYYPGFDRDLRWRTGIKIVP 171 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~-~~~~i~~t~G-~~~ai~~~~~~l~~---~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~ 171 (442)
+.+.|+.++++++ + ++++|++|+| +|++++.++..|+. +||.|++ .|....+...++ ..|+++..
T Consensus 46 ~~~~r~~l~~l~~--------~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~-g~~~~~~~~~a~-~~g~~~~~ 115 (355)
T cd00611 46 VNEAESDLRELLN--------IPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVT-GAWSAKAAKEAK-RYGGVVVI 115 (355)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEEC-CHHHHHHHHHHH-hcCCCcEE
Confidence 4677777777775 3 4678999988 99999999999987 4555544 222222223556 48999998
Q ss_pred EecCCCCCCcCC-HHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 172 IHCDSSNNFQIT-PQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 172 v~~~~~~~~~~d-~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
++.++++++. + ++..+..+. +++++|.++..+|.||..++ ++++.+|+++++|.+.+- +.
T Consensus 116 ~~~~~~g~~~-~~~~~~~~~~~------~~~~lV~~~h~~t~tG~~~~--------~i~~~~g~~~~VDa~qs~---g~- 176 (355)
T cd00611 116 VAAKEEGKYT-KIPDVETWDLA------PDAAYVHYCSNETIHGVEFD--------EVPDTGGVPLVADMSSNI---LS- 176 (355)
T ss_pred EecccccCCC-CCCCHhhcCCC------CCCCEEEEeCCcccccEEcc--------eecccCCCeEEEEccccc---cC-
Confidence 8876543331 2 222222222 37899999999999999743 344468999999999884 22
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc--------------cccCCCcHHHHH
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM--------------SSFTLISSQTQY 316 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~--------------~~~~~~s~~~q~ 316 (442)
....+.++ + +.+.|..|.+|.+| +|+++++++.+ +.+... ..+++.+.....
T Consensus 177 ~~idv~~~---------~--~~~ss~~K~lGP~G--~g~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~ 242 (355)
T cd00611 177 RPIDVSKF---------G--VIYAGAQKNLGPAG--VTVVIVRKDLL-GKARKITPSMLNYKTHADNNSLYNTPPTFAIY 242 (355)
T ss_pred CCCCHHHh---------C--EEEeecccccCCCc--eEEEEECHHHH-hhcccCCCCcccHHHHHhcCCCCCCChHHHHH
Confidence 23344332 2 35567899999777 68888844333 222110 012333333444
Q ss_pred HHHHHhcCchhHHHH--HHHHHHHHHHHHHHHHHHHHhC-CCe-ee-c--CCceEEEEEecCCcccccChhhHHHHHHHH
Q 046900 317 LLASMLSNKKFTENY--IKTNRERLQKRYQMIIEGLRSA-GIE-CL-K--GNAGLFCWMNLSPLLEEQTREGELALWDSM 389 (442)
Q Consensus 317 ~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~-~~-~--~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l 389 (442)
++.+.++ ++.+. ++...++.++..+++.+.|++. |+. .. . ...+..+.+.++.. ....++...+
T Consensus 243 ~L~aal~---~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~------~l~~~~~~~~ 313 (355)
T cd00611 243 MMGLVLK---WLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKE------ELEKEFLKEA 313 (355)
T ss_pred HHHHHHH---HHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCCh------hhhHHHHHHH
Confidence 4444444 33332 6777888889999999999988 752 21 1 12333455555542 0123333455
Q ss_pred HHcCcEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHH
Q 046900 390 LHEVKLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNF 433 (442)
Q Consensus 390 ~~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~ 433 (442)
.+. |+.+.+|.. ..+.+|+|+.. .+++|++++++.|+++
T Consensus 314 ~r~-G~~~~~~~~----~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 314 EAA-GMIGLKGHR----SVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred HHC-CCcccCCCc----ccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 455 998666653 23689999862 3899999999999885
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-13 Score=137.67 Aligned_cols=360 Identities=11% Similarity=0.048 Sum_probs=194.7
Q ss_pred CCCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCC
Q 046900 41 YEESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRA 116 (442)
Q Consensus 41 ~~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 116 (442)
|..+.....+||+..+. ..+ .++.+.+.+.+....... ....|.. .+....+|+.+.+...
T Consensus 46 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~--------~~~~~~~----~~~~~~lae~L~~~~p--- 110 (457)
T PRK05639 46 LIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQH--------SMIGYTH----SERAIRVAEKLAEISP--- 110 (457)
T ss_pred EEEeCCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccc--------cccCccC----CHHHHHHHHHHHhhCC---
Confidence 33345567788886653 223 335555555544321000 0011211 2444456666654321
Q ss_pred ccCCCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCc-------------EEEEEecCCCC--C
Q 046900 117 KFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGI-------------KIVPIHCDSSN--N 179 (442)
Q Consensus 117 ~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~-------------~v~~v~~~~~~--~ 179 (442)
...+.+++++++++|++.+++... .....|+...-+|.+....+....|. .++.+|..... .
T Consensus 111 -~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 189 (457)
T PRK05639 111 -IENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNP 189 (457)
T ss_pred -CCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCcccccc
Confidence 223689999999999999887652 23457888888887754322111111 12233322100 0
Q ss_pred Cc----CCHH--------HHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 180 FQ----ITPQ--------ALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 180 ~~----~d~~--------~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
|. -|.+ .+++.+........++.++++..-....|.+. +.+-+++|.++|++|++++|.||++..+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~G 269 (457)
T PRK05639 190 WGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIG 269 (457)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccC
Confidence 00 0222 23333321111134566666654355567755 56669999999999999999999998754
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH-ccccCCCcHHHHHHHHHHhcCc
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR-MSSFTLISSQTQYLLASMLSNK 325 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~-~~~~~~~s~~~q~~~~~~l~~~ 325 (442)
..|..+. ...+.- ...++ +|+|.+| .|+.+|.+++ ++.+.+.... ....+..++++..++.+.|+..
T Consensus 270 rtG~~~a-~~~~gv------~PDiv---~~gK~l~-gG~pi~av~~-~~~i~~~~~~~~~~T~~g~p~~~aaa~a~l~~l 337 (457)
T PRK05639 270 RTGKWFA-SEWFEV------KPDLI---IFGKGVA-SGMGLSGVIG-RKELMDLTSGSALLTPAANPVISAAAEATLEII 337 (457)
T ss_pred cCchHHH-HHhcCC------CCCEE---Eechhhc-CCCcceeEEe-hHHHHhhcCCCcccCCCcCHHHHHHHHHHHHHH
Confidence 3442111 111111 12222 3899998 7899999999 5566553221 1122345666655555555421
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh----CCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCC
Q 046900 326 KFTENYIKTNRERLQKRYQMIIEGLRS----AGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGS 401 (442)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~ 401 (442)
. + ....+..++.-++|.+.|++ .++......-|+++.+++..............+...++++ |+++.+..
T Consensus 338 ~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~-Gv~~~~~g 411 (457)
T PRK05639 338 E--E---ENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFEL-GLILPSYG 411 (457)
T ss_pred H--H---ccHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhC-CeEEeecC
Confidence 1 1 11222233333444444443 3333333455667777663211111112345677778776 99997642
Q ss_pred CCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 402 SCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 402 ~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
.....+|+... .++++++++++++|.+++....
T Consensus 412 ----~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~ 445 (457)
T PRK05639 412 ----MFGNVIRITPPLVITKEIAEKGLEIMERAIKDAL 445 (457)
T ss_pred ----CCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 12467999886 4599999999999999998754
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-14 Score=139.91 Aligned_cols=287 Identities=11% Similarity=0.093 Sum_probs=177.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCcc-CCCcEEEec-ChHHHHHHHHHhhcCC-CCeEEEcCCCCcC-hHHhH-hhhcCc-EEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKF-DLNRIVVTA-GATAANELLTFILADP-GDALLVPTPYYPG-FDRDL-RWRTGI-KIV 170 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~-~~~~i~~t~-G~~~ai~~~~~~l~~~-gd~Vl~~~p~y~~-~~~~~-~~~~G~-~v~ 170 (442)
+.+.|+.++++++ + ++++|+++. ++|.+++.++..|+++ ++.|+. +-.|+. +...+ + +.|+ ++.
T Consensus 50 ~~~~r~~l~~l~~--------~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g~f~~~~~~~~~~-~~g~~~v~ 119 (378)
T PRK03080 50 LKRVIEGTRELLS--------LPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WESFGSKWATDVVK-QLKLEDPR 119 (378)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eCHHHHHHHHHHHh-hcCCCCce
Confidence 4566666666664 3 345788886 7999999999999874 444444 334443 22222 4 4788 888
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
.++.+. +..+|+++++ .++.|.+++.+|.||..++ +++|++ +++|+++|+|.+.+- +.
T Consensus 120 ~~~~~~--g~~~d~~~i~-----------~~~~V~~~h~~t~tG~~~p---i~~I~~--~~~g~~~vVDa~qs~---G~- 177 (378)
T PRK03080 120 VLEADY--GSLPDLSAVD-----------FDRDVVFTWNGTTTGVRVP---VARWIG--ADREGLTICDATSAA---FA- 177 (378)
T ss_pred EeccCC--CCCCCHhhcC-----------CCCCEEEEecCCccceecc---chhhcc--ccCCCeEEEeccccc---cc-
Confidence 887654 2346666533 2456888899999999999 556666 678999999999884 22
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCC-CCceeEEEeecCHHHHHHHHHcc------------------------
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGL-PGFRVGTIYSYNDKVVTTARRMS------------------------ 305 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~-~G~RiG~i~~~~~~~~~~~~~~~------------------------ 305 (442)
....+..+ + +++.|..|.++. +| +|+++..+ ...+.+....
T Consensus 178 ~pidv~~i--D---------~~~~s~~K~l~~P~G--~g~l~v~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (378)
T PRK03080 178 LPLDWSKL--D---------VYTFSWQKVLGGEGG--HGMAILSP-RAVERLESYTPARPIPKFFRLTKGGKAIENSFKG 243 (378)
T ss_pred CCCCHHHC--c---------EEEEehhhhCCCCCc--eEEEEECH-HHHHhhhcccCCCCCchhheeccchHHhhhhhcC
Confidence 23344432 2 678899999853 55 79998854 3433332110
Q ss_pred -ccCCCcHHHHHHHHHHhcCchhHHH--HHHHHHHHHHHHHHHHHHHHHhCC-Ceeec--C--CceEEEEEecCCccccc
Q 046900 306 -SFTLISSQTQYLLASMLSNKKFTEN--YIKTNRERLQKRYQMIIEGLRSAG-IECLK--G--NAGLFCWMNLSPLLEEQ 377 (442)
Q Consensus 306 -~~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~--~--~~g~~~~~~~~~~~~~~ 377 (442)
.++..+.....++.+.++ ++.+ -++...++.++..+++.+.|++.+ +++.. + .++..+.+.+++.. .
T Consensus 244 ~t~~tp~i~~i~~l~~al~---~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~--~ 318 (378)
T PRK03080 244 QTINTPSMLTVEDYLDQLD---WANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQ--A 318 (378)
T ss_pred CcccCchHHHHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCch--H
Confidence 001111122222222332 2222 245667777788888888888875 45442 1 23234555555410 0
Q ss_pred ChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 378 TREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 378 ~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
. ...++...++++ |+.+..|... ...+.+|+|+. ..++++++.+++.|++++++.+.
T Consensus 319 ~--~~~~~~~~l~~~-~i~v~~g~~~--~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~~ 376 (378)
T PRK03080 319 A--VDAAAVAKLLRE-NGAVDIEPYR--DAPNGLRIWCGPTVEPADVEALTPWLDWAFERLKA 376 (378)
T ss_pred H--HHHHHHHHHHHc-CCeecccccc--CCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 0 123466677776 8888876532 13468999986 23899999999999999887653
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-14 Score=142.06 Aligned_cols=284 Identities=18% Similarity=0.285 Sum_probs=178.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD 175 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~ 175 (442)
..++++++++|++ ...++.+++++.|+.+++.++ +++||.|+++.-+|+....++.. .|++++.++++
T Consensus 27 ~~~fE~~~a~~~g----------~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~-~G~~pv~~Di~ 95 (363)
T PF01041_consen 27 VEEFEKEFAEYFG----------VKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILW-AGAEPVFVDID 95 (363)
T ss_dssp HHHHHHHHHHHHT----------SSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHH-TT-EEEEE-BE
T ss_pred HHHHHHHHHHHhC----------CCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHH-hccEEEEEecc
Confidence 5788888988875 678999999999999999998 57999999999999999999985 99999999998
Q ss_pred CCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCC-CCCCccc
Q 046900 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAF-SSSEFVS 254 (442)
Q Consensus 176 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~-~~~~~~s 254 (442)
+ ..+.+|++.+++.+++ ++|+|++++. -|... ++.+|.++|+++|++||+|.+++.... .+..
T Consensus 96 ~-~~~~id~~~~~~~i~~------~t~ai~~~h~---~G~~~---d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~--- 159 (363)
T PF01041_consen 96 P-ETLNIDPEALEKAITP------KTKAILVVHL---FGNPA---DMDAIRAIARKHGIPLIEDAAQAFGARYKGRP--- 159 (363)
T ss_dssp T-TTSSB-HHHHHHHHHT------TEEEEEEE-G---GGB------HHHHHHHHHHTT-EEEEE-TTTTT-EETTEE---
T ss_pred C-CcCCcCHHHHHHHhcc------CccEEEEecC---CCCcc---cHHHHHHHHHHcCCcEEEccccccCceeCCEe---
Confidence 5 4689999999999986 8899988754 44443 488889999999999999999985221 1211
Q ss_pred HHHHHhhhcCCCCCcEEEEecC--cccCCCCCceeEEEeecCHHHHHHHHHccccC-------------------CCcHH
Q 046900 255 IAEILEARQYKDSERVHIVYSL--SKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT-------------------LISSQ 313 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~--SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~-------------------~~s~~ 313 (442)
+.. .+ .+.+.|| +|.+. .| ..|.++++++.+.+.++.+...+ .++.+
T Consensus 160 ~G~---------~g-d~~~fSf~~~K~i~-~g-eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~ 227 (363)
T PF01041_consen 160 VGS---------FG-DIAIFSFHPTKIIT-TG-EGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSEL 227 (363)
T ss_dssp TTS---------SS-SEEEEESSTTSSS--SS-S-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHH
T ss_pred ccC---------CC-CceEecCCCCCCCc-CC-CCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHH
Confidence 100 12 2456676 68874 33 46999998888887776544321 13333
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec--CCc---eE-EEEEecCCcccccChhhHHHHH
Q 046900 314 TQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK--GNA---GL-FCWMNLSPLLEEQTREGELALW 386 (442)
Q Consensus 314 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~---g~-~~~~~~~~~~~~~~~~~~~~l~ 386 (442)
..+.+..-|+. +++..+.-+++.+.+.+.|.+. ++.... +.. .+ .+.+.++.... .+..++.
T Consensus 228 ~AAigl~QL~~-------L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~----~~rd~l~ 296 (363)
T PF01041_consen 228 QAAIGLAQLKR-------LDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEAL----ADRDELV 296 (363)
T ss_dssp HHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGC----STHHHHH
T ss_pred HHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccc----chHHHHH
Confidence 33333333332 2333334445566677777765 443322 221 22 22333433110 1256788
Q ss_pred HHHHHcCcEEEeCCCC-C-C------C-----C--CC-------CEEEEEee-cCCHHHHHHHHHHHH
Q 046900 387 DSMLHEVKLNISPGSS-C-H------C-----S--EP-------GWFRVCFA-NMSEQTLEVALKRIH 431 (442)
Q Consensus 387 ~~l~~~~gi~v~pg~~-f-~------~-----~--~~-------~~iRls~~-~~~~e~i~~~l~~l~ 431 (442)
+.|.++ ||.+.+... . . . . -+ ..+.|-+. .+++++++..++.|+
T Consensus 297 ~~L~~~-GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 297 EALRAR-GIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp HHHHHT-TBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred HHHHHC-CCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 888776 999987541 0 0 0 0 00 12444443 458888888887764
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-14 Score=129.19 Aligned_cols=300 Identities=15% Similarity=0.110 Sum_probs=201.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhhcCcEEEEEec
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTGIKIVPIHC 174 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~ 174 (442)
...|.+.+|++.+ .+..++.+++.-|++..+..|.+ ||=.|.-+.-.+......++. .++.-.-+..
T Consensus 218 hv~LE~eLA~LHq----------K~aALlFsSCfVANDstLftLak~lpgcei~SD~gNHASMI~GIrn-s~v~K~IFrH 286 (570)
T KOG1360|consen 218 HVRLEAELADLHQ----------KEAALLFSSCFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQGIRN-SRVPKHIFRH 286 (570)
T ss_pred hhhHHHHHHHHhc----------CcceeeeeeeeeccchHHHHHHHHCCCcEEeccccchHHHHHHhhh-cCCcceeecc
Confidence 4688888988865 34455555555555555544422 776677777778888888885 6665433332
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s 254 (442)
-|++.|++.|+...+. .+|+|-+...+..+|.+.| +++|++++.+||.+-++||+++-..|+... ..
T Consensus 287 -------ND~~hL~~lL~~~~~s--vPKivAFEtVhSM~Gavcp---leelcDvah~yGAiTFlDEVHAVGlYG~rG-aG 353 (570)
T KOG1360|consen 287 -------NDLDHLEQLLQSSPKS--VPKIVAFETVHSMDGAVCP---LEELCDVAHKYGAITFLDEVHAVGLYGPRG-AG 353 (570)
T ss_pred -------CCHHHHHHHHHhCCCC--CCceEEEeeeeccCCCcCC---HHHHHHHHHHhCceeeeehhhhhccccCCC-CC
Confidence 3789999999875432 5678888899999999999 788899999999999999999876665321 11
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc----CCCcHHHHHHHHHHhcCchhHHH
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF----TLISSQTQYLLASMLSNKKFTEN 330 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~ 330 (442)
+.+.+ ..+...-|+.+++.|+||+-| |||.+ ...+.+.++.+..- ...++.....+....+-..- +
T Consensus 354 vgerd----Gvm~kvDiIsGTLgKafGcVG---GYIAa-t~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~-~- 423 (570)
T KOG1360|consen 354 VGERD----GVMHKVDIISGTLGKAFGCVG---GYIAA-TRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKS-E- 423 (570)
T ss_pred ccccC----Ccchhhhhcccchhhhccccc---ceehh-hhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhh-h-
Confidence 11110 112344577899999999888 99998 67788888875432 22333333333322221110 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC--CC
Q 046900 331 YIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS--EP 408 (442)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~--~~ 408 (442)
.-...|+.-+++-.++.+.|.+.|+.+.+.+.- .+-+.+.+.. -..++++.|+.++||.|-.-. |... +.
T Consensus 424 eg~~lR~~hqrnv~~~kq~l~~~GiPVi~~pSH-IiPv~vgda~------l~~~~sd~Li~~h~iYvQaIN-yPTV~rG~ 495 (570)
T KOG1360|consen 424 EGRVLRRQHQRNVKYVKQLLMELGIPVIPNPSH-IIPVRVGDAA------LAKQASDILISKHNIYVQAIN-YPTVARGT 495 (570)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCcccCCCcc-eeeeeccCHH------HHHHHHHHHHHhcCeEEEecc-CCcccccc
Confidence 113456666777888999999999999876654 5555554432 256788999999999998643 3322 23
Q ss_pred CEEEEEee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 409 GWFRVCFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 409 ~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
..+||... ..+.+.++.+++.|..++.+..
T Consensus 496 E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~ 526 (570)
T KOG1360|consen 496 ERLRIAPTPHHTPQMMNILVNALLDVWNEVG 526 (570)
T ss_pred eeeecCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 45888765 2378888999999998887643
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-13 Score=136.95 Aligned_cols=314 Identities=11% Similarity=0.092 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC-------CC-CeEEEcCCCCcChHHhHhhhcCc---
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD-------PG-DALLVPTPYYPGFDRDLRWRTGI--- 167 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~-------~g-d~Vl~~~p~y~~~~~~~~~~~G~--- 167 (442)
+....+|+.+.+..+ ..+.+++++++++|++.+++.... +| ..|+...-+|.+....+....|.
T Consensus 89 ~~~~~lae~l~~~~~-----~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~ 163 (451)
T PRK07678 89 EPAIKLAEKLNEWLG-----GEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQR 163 (451)
T ss_pred HHHHHHHHHHHHhCC-----CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCccc
Confidence 334456666654322 135799999999999988776421 23 57888888887754332211111
Q ss_pred ---------EEEEEecCCCCC--Cc-----CC---HHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHH
Q 046900 168 ---------KIVPIHCDSSNN--FQ-----IT---PQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLD 227 (442)
Q Consensus 168 ---------~v~~v~~~~~~~--~~-----~d---~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~ 227 (442)
.+..+|...... |. .| .+.+++.+... ...++.+|++.....-.|.+. +.+-++++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~ 241 (451)
T PRK07678 164 KYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWE--LSETIAAVIMEPIITGGGVLMPPQDYMKAVKE 241 (451)
T ss_pred ccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHHHHH
Confidence 112222111000 10 01 12345555421 123565655554344467664 5666999999
Q ss_pred HHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH---
Q 046900 228 FATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR--- 303 (442)
Q Consensus 228 ~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~--- 303 (442)
+|++||+++|.||++..|...|..+ ....+.- .+| +-+++|.+| .| +.+|.+++ .+++.+.+..
T Consensus 242 lc~~~g~llI~DEV~tGfGRtG~~~-~~~~~gv-----~PD----ivt~gK~lg-gG~~Pi~av~~-~~~i~~~~~~~~~ 309 (451)
T PRK07678 242 ICQKHGALLISDEVICGFGRTGKAF-GFMNYGV-----KPD----IITMAKGIT-SAYLPLSATAV-KKEIYEAFKGKGE 309 (451)
T ss_pred HHHHcCCEEEEeehhhcCCcCchhH-HHHhcCC-----CCC----EEEeecccc-cCCcceeEEEE-cHHHHHHHhccCc
Confidence 9999999999999998765444321 1111111 122 236899998 77 69999999 5666666542
Q ss_pred -----ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHH----HhCCCeeecCCceEEEEEecCCcc
Q 046900 304 -----MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGL----RSAGIECLKGNAGLFCWMNLSPLL 374 (442)
Q Consensus 304 -----~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~g~~~~~~~~g~~~~~~~~~~~ 374 (442)
....+..++++.+++.+.|+... + ....++.++.-+++.+.| .++++......-|+++-+.+....
T Consensus 310 ~~~~~h~~T~~gnp~~~aaa~a~l~~l~---~--~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~ 384 (451)
T PRK07678 310 YEHFRHVNTFGGNPAACALALKNLEIME---N--ENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDK 384 (451)
T ss_pred ccccccCCCCCcCHHHHHHHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCC
Confidence 12234556777777666665211 1 012222333333333333 334433323344556666663211
Q ss_pred ccc---ChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 375 EEQ---TREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 375 ~~~---~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
... .......++..++++ ||++.+...........+|++.. .++++++++++++|.+++.++
T Consensus 385 ~~~~~~~~~~a~~i~~~l~~~-Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 385 ETKEPADNDKVASVVAACKEK-GLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred cccCcCchHHHHHHHHHHHHC-CcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 100 112246777788776 99997632111122357999876 458999999999999998764
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-13 Score=130.93 Aligned_cols=170 Identities=19% Similarity=0.209 Sum_probs=125.0
Q ss_pred CCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---hcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHh
Q 046900 120 LNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---RTGIKIVPIHCDSSNNFQITPQALEAAYKEAES 196 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~ 196 (442)
....++++++..|+..++..|+..|++|+.....|.+....++. ..|++...++++ |++.+++++.+
T Consensus 92 a~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~-------~~~~~~~~i~~--- 161 (409)
T KOG0053|consen 92 AAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD-------DLKKILKAIKE--- 161 (409)
T ss_pred CceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh-------hHHHHHHhhcc---
Confidence 55689999999999999999999999999999999887665432 378887777654 46777777765
Q ss_pred cCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecC
Q 046900 197 KDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSL 276 (442)
Q Consensus 197 ~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~ 276 (442)
++++|++.+|+||+..+.+ +++|.++|++++++||+|+.++... +.....+..+ |+++|.
T Consensus 162 ---~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~-----~~~pL~lGAD---------IV~hSa 221 (409)
T KOG0053|consen 162 ---NTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPY-----NQDPLPLGAD---------IVVHSA 221 (409)
T ss_pred ---CceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCccc-----ccChhhcCCC---------EEEEee
Confidence 7999999999999999987 7777888889999999999998542 3334444333 889999
Q ss_pred cccCCC-CCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHH
Q 046900 277 SKDLGL-PGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLA 319 (442)
Q Consensus 277 SK~~g~-~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~ 319 (442)
+|.+|- .-+=.|.++...+.+...++..... +..++.......
T Consensus 222 TKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~ 267 (409)
T KOG0053|consen 222 TKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLS 267 (409)
T ss_pred eeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHh
Confidence 999852 3344566666446665555543332 444554444333
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-13 Score=133.09 Aligned_cols=309 Identities=13% Similarity=0.103 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc-------CCCCe-EEEcCCCCcChHH-hHhhhcCcE
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA-------DPGDA-LLVPTPYYPGFDR-DLRWRTGIK 168 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~-------~~gd~-Vl~~~p~y~~~~~-~~~~~~G~~ 168 (442)
.+....+++.+.+..+ -..+.+++++++++|+..+++... ++++. |+...-+|.+... .+.. .|.+
T Consensus 97 ~~~~~~lae~L~~~~p----~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~-s~~~ 171 (460)
T PRK12403 97 HPAVIELSELLFSLLP----GHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATAL-GGMK 171 (460)
T ss_pred CHHHHHHHHHHHHhCC----CCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhc-CCCc
Confidence 4455556666654322 123689999999999999988763 23333 4444556766432 2221 2221
Q ss_pred -----------EEEEecCCC--CCCcCC--------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHH
Q 046900 169 -----------IVPIHCDSS--NNFQIT--------PQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELL 226 (442)
Q Consensus 169 -----------v~~v~~~~~--~~~~~d--------~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~ 226 (442)
+..+|.... ..+... .+.+++.+.+. ...++.+|++..-....|.+. +.+-+++|.
T Consensus 172 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr 249 (460)
T PRK12403 172 FMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILEL--GAENVAGFVAEPFQGAGGMIFPPESYWPEIQ 249 (460)
T ss_pred cccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHh--CCCceEEEEEccccCCCCCccCCHHHHHHHH
Confidence 222221100 001111 24455554321 113455555543355567755 566699999
Q ss_pred HHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc-eeEEEeecCHHHHHHHHH--
Q 046900 227 DFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF-RVGTIYSYNDKVVTTARR-- 303 (442)
Q Consensus 227 ~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~-RiG~i~~~~~~~~~~~~~-- 303 (442)
++|++||+++|.||++..+...|..+. ...+.- .+.++ +++|.+| .|. .+|.+++ .+.+.+.+..
T Consensus 250 ~lc~~~g~lLI~DEV~tGfGRtG~~~a-~e~~gv------~PDiv---~~gK~lg-gG~~Piga~v~-~~~i~~~~~~~~ 317 (460)
T PRK12403 250 RICRQYDVLLCADEVIGGFGRTGEWFA-HEHFGF------EPDTL---SIAKGLT-SGYVPMGGLVL-SKRIAEALVEQG 317 (460)
T ss_pred HHHHHcCCEEEEeccccCCCcCchhhh-hhhcCC------CCCeE---EEccccc-ccccceEEEEE-CHHHHHHHhcCC
Confidence 999999999999999987644443221 111111 12222 4899998 784 8999888 5667666542
Q ss_pred ----ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHHHHHHHHH----HhCCCeeecCCceEEEEEecCCcc
Q 046900 304 ----MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQ-KRYQMIIEGL----RSAGIECLKGNAGLFCWMNLSPLL 374 (442)
Q Consensus 304 ----~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~~L----~~~g~~~~~~~~g~~~~~~~~~~~ 374 (442)
....+..++++.+++.+.|+-.+ ++ ...+..+ +.-+++.+.| .++++......-|+++.+++....
T Consensus 318 ~~~~~~~T~~gnPl~~Aaala~L~~i~--~~---~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~ 392 (460)
T PRK12403 318 GVFAHGLTYSGHPVAAAVAIANLKALR--DE---GVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDK 392 (460)
T ss_pred CccccCCCCCCCHHHHHHHHHHHHHHH--hc---cHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCc
Confidence 11223456777666666664211 10 1122222 2233333333 333433333455667777774311
Q ss_pred cc-cCh----hhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 375 EE-QTR----EGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 375 ~~-~~~----~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
.. ... .....+...++++ ||.+.+. .+.+|++.. .+++++++++++++.+++.+..
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~-------~~~~~l~Ppl~it~~eid~~~~~l~~al~~~~ 454 (460)
T PRK12403 393 ATRKRFANENDLAWRCRTIGFEE-GVIIRST-------LGRMIMAPALVAGRAEIDELVDKTRIAVDRTA 454 (460)
T ss_pred cccccccchhHHHHHHHHHHHhC-CEEEEec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 10 000 0123345556666 9999752 134888876 4599999999999999998865
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-13 Score=134.12 Aligned_cols=352 Identities=10% Similarity=0.098 Sum_probs=194.8
Q ss_pred CCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCC-CcchHHHHHHHHHHHHHHhCCCCcc
Q 046900 44 STNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQD-YHGLKSFRQAMASFMEQIRGGRAKF 118 (442)
Q Consensus 44 ~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~ 118 (442)
+.....+|||..+ .+.++ ++.+.+.+.+..... ..+.. ..+..+....+|+.+.+... +.
T Consensus 85 D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~------------~~~~~~~~~~~~~~~~lae~L~~~~~---~~ 149 (504)
T PLN02760 85 DINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKL------------PFYHSFWNRTTKPSLDLAKELLEMFT---AR 149 (504)
T ss_pred ECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhc------------cceecccccCcHHHHHHHHHHHhhcC---CC
Confidence 3456678898764 23333 355555555443210 00111 11234556667776654321 11
Q ss_pred CCCcEEEecChHHHHHHHHHhhc-------CCC-CeEEEcCCCCcChHH-hHhhhcCcE------------EEEEecCCC
Q 046900 119 DLNRIVVTAGATAANELLTFILA-------DPG-DALLVPTPYYPGFDR-DLRWRTGIK------------IVPIHCDSS 177 (442)
Q Consensus 119 ~~~~i~~t~G~~~ai~~~~~~l~-------~~g-d~Vl~~~p~y~~~~~-~~~~~~G~~------------v~~v~~~~~ 177 (442)
+-+.+++++++++|+..+++... .++ ..|+..+-+|.+... .+.. .|.. +..++.+.
T Consensus 150 ~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~sl-sg~~~~~~~~~~~~~~~~~~~~p~- 227 (504)
T PLN02760 150 KMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASL-SGLPALHQKFDLPAPFVLHTDCPH- 227 (504)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhc-cCChhhccCCCCCCCCcEEeCCCc-
Confidence 23579999999999999988763 122 578877777776533 2221 2321 11122110
Q ss_pred CCCc-------------CCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCC
Q 046900 178 NNFQ-------------ITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYS 243 (442)
Q Consensus 178 ~~~~-------------~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~ 243 (442)
.|. ...+.|++.+... ...++.+|++..-....|.+. +.+-+++|.++|++||+++|.||++.
T Consensus 228 -~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~T 304 (504)
T PLN02760 228 -YWRFHLPGETEEEFSTRLADNLENLILKE--GPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVIC 304 (504)
T ss_pred -ccccCCCCCcHHHHHHHHHHHHHHHHHhc--CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhh
Confidence 011 0123466655421 112454554443355667665 56669999999999999999999997
Q ss_pred cCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH---------ccccCCCcHH
Q 046900 244 GSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR---------MSSFTLISSQ 313 (442)
Q Consensus 244 ~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~---------~~~~~~~s~~ 313 (442)
.|...|..+. ...+.- .+| +.+|+|.+| .| +.+|.+++ ++.+.+.+.. ....+..+++
T Consensus 305 GfGRtG~~~a-~e~~gv-----~PD----ivtlgK~lg-gG~~PigAv~~-~~~i~d~~~~~~~~~~~~~h~~T~~gnPl 372 (504)
T PLN02760 305 AFGRLGTMFG-CDKYNI-----KPD----LVSLAKALS-SAYMPIGAVLV-SPEISDVIHSQSNKLGSFAHGFTYSGHPV 372 (504)
T ss_pred CCcccchhhH-HHhcCC-----CCc----EEEeccccc-CCccccceEee-cHHHHhhhhcccccccCcccCCCCCCCHH
Confidence 6544443211 111110 122 467899997 67 48999988 5667666542 1122445677
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh---CCCeeecCCceEEEEEecCCccccc-C----hhhHHHH
Q 046900 314 TQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS---AGIECLKGNAGLFCWMNLSPLLEEQ-T----REGELAL 385 (442)
Q Consensus 314 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~g~~~~~~~~g~~~~~~~~~~~~~~-~----~~~~~~l 385 (442)
+.+++.+.|+-.. + ....+..++.-+++.+.|++ .++......-|+++-+++....... . ..-...+
T Consensus 373 ~~Aaala~Le~i~---~--~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i 447 (504)
T PLN02760 373 SCAVALEALKIYK---E--RNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYF 447 (504)
T ss_pred HHHHHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHH
Confidence 7777666665211 1 11233333333444444433 3332222344567777664321100 0 0114556
Q ss_pred HHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 386 WDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 386 ~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
...++++ ||.+.++. ..+|++.. .+++++++++++++.+++.+...+
T Consensus 448 ~~~~~~~-Gvl~~~~g-------~~lrl~Ppl~it~eeid~~~~~l~~al~~~~~~ 495 (504)
T PLN02760 448 GAECKKR-GMLVRVAG-------DNIMMSPPLIITPEEVDELISIYGKALKATEER 495 (504)
T ss_pred HHHHHhC-CcEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776 99997631 35899876 349999999999999999876543
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-13 Score=133.93 Aligned_cols=311 Identities=15% Similarity=0.095 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC-------C-CCeEEEcCCCCcChHHhHhhhcCc---
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD-------P-GDALLVPTPYYPGFDRDLRWRTGI--- 167 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~-------~-gd~Vl~~~p~y~~~~~~~~~~~G~--- 167 (442)
+.+..+|+.+.+... -..+.+++++++++|++.+++.... + ..+|+...-+|.+.........|.
T Consensus 90 ~~~~~lae~L~~~~p----~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~ 165 (459)
T PRK05965 90 EPAIRLAAKLAERAP----GSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAF 165 (459)
T ss_pred HHHHHHHHHHHhhCC----CCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchh
Confidence 444556666654321 1246899999999999998876421 2 357888888887764321101111
Q ss_pred ---------EEEEEecCC--CCCCcCCH--------HHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHH
Q 046900 168 ---------KIVPIHCDS--SNNFQITP--------QALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLD 227 (442)
Q Consensus 168 ---------~v~~v~~~~--~~~~~~d~--------~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~ 227 (442)
.+..++... ...+.-|. +.+++.+.+. ...++.+|++...+...|.+. |.+-+++|.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~ 243 (459)
T PRK05965 166 HRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAEL--GADNVAAFFCEPIQGSGGVIVPPKGWLKAMRE 243 (459)
T ss_pred hcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEeccccCCCCccCCHHHHHHHHH
Confidence 012222111 00011122 4566666532 113566666664466667754 6666999999
Q ss_pred HHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH---
Q 046900 228 FATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR--- 303 (442)
Q Consensus 228 ~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~--- 303 (442)
+|++||+++|.||+...|...|..+ ....+.- .+. +-+++|.++ .| +.+|.+++ ++.+.+.+..
T Consensus 244 lc~~~gillI~DEV~tGfGRtG~~~-a~~~~gv------~PD---iv~~gKgl~-gG~~Pi~av~~-~~~i~~~~~~~~~ 311 (459)
T PRK05965 244 ACRELGILFVADEVITGFGRTGPLF-ACEAEGV------VPD---LMTVAKGLT-SGYVPMGAVLM-SDHVYQGIADGAG 311 (459)
T ss_pred HHHHcCCEEEEechhccCccCchhh-hHhhcCC------CCC---eEEechhhc-cCCcceeEEEE-cHHHHHHHhcccc
Confidence 9999999999999999865555322 1111111 122 235799998 89 49999999 5666655531
Q ss_pred ------ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh---CCCeeecCCceEEEEEecCCcc
Q 046900 304 ------MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS---AGIECLKGNAGLFCWMNLSPLL 374 (442)
Q Consensus 304 ------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~g~~~~~~~~g~~~~~~~~~~~ 374 (442)
....+..++++.+++.+.|+-. ++ ....+..++.-+++.+.|++ ..+-.....-|+++-+++....
T Consensus 312 ~~~~~~h~~T~~gnpl~~Aaa~a~L~~l---~~--~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~ 386 (459)
T PRK05965 312 AAAPVGHGYTYSAHPVSAAVGLEVLRLY---HE--GGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADK 386 (459)
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEeccc
Confidence 1123456777766666665421 11 11222333333444444443 2221122345566667664211
Q ss_pred ccc-----ChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 375 EEQ-----TREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 375 ~~~-----~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
... .......+...++++ ||++.+. +...+|+... .++++++++++++|.+++.+...
T Consensus 387 ~~~~~~~~~~~~~~~i~~~~~~~-Gll~~~~------g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~~ 450 (459)
T PRK05965 387 ATKTPFDAALDPADRIFDRAYAN-GLVFRAF------GDGVLGFAPALCCTEGEFDLIFERTRKTLDDVLA 450 (459)
T ss_pred cccCCCCchhHHHHHHHHHHHhC-CeEEEec------CCcEEEEECCCcCCHHHHHHHHHHHHHHHHHHhc
Confidence 000 001245677777776 9999762 2356888865 44899999999999999987643
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-14 Score=136.61 Aligned_cols=286 Identities=13% Similarity=0.131 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHhCCCCcc-CCCcEEEe-cChHHHHHHHHHhhcCCCCeEEEcCCCCcC--hHHhHhhhcCcEEEEEec
Q 046900 99 SFRQAMASFMEQIRGGRAKF-DLNRIVVT-AGATAANELLTFILADPGDALLVPTPYYPG--FDRDLRWRTGIKIVPIHC 174 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~-~~~~i~~t-~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~--~~~~~~~~~G~~v~~v~~ 174 (442)
++-+.+.+.+.+.++ . +..+|+++ ++++.+++.++..++.+||++++..-+..+ +.+.++ +.|.. ..+..
T Consensus 48 ~~~~~~~~~l~~l~~----~~~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r~~~~a~-~~g~~-~~~~~ 121 (360)
T PRK05355 48 AVAEEAEADLRELLN----IPDNYKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKKAIKEAK-KYGEV-NVAAS 121 (360)
T ss_pred HHHHHHHHHHHHHhC----CCCCcEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHH-HhCCc-eEEec
Confidence 444444444444433 3 23456666 558889999999999999998887765543 344556 47865 55554
Q ss_pred CCCCCCcCCHHHHHH-HHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 175 DSSNNFQITPQALEA-AYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~-~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
++..++ .+..++++ .+++ ++++|.++...+.||...+ .+.+| +++++|+|.+.+- +.. ..
T Consensus 122 ~~~~g~-~~~~~~~~~~l~~------~~~~V~~th~eTstGv~~~--~i~~i------~g~l~vVDavss~---g~~-~i 182 (360)
T PRK05355 122 SEDDGF-TYIPPLDEWQLSD------DAAYVHYTSNETIDGTEFH--ELPDT------GDVPLVADMSSDI---LSR-PI 182 (360)
T ss_pred ccccCC-CCCCChhhccCCC------CCCEEEEccCCCcceEecC--ccccc------CCCcEEEEcCccc---cCc-cC
Confidence 431233 23333333 5533 6789999999999999984 24444 7999999999883 332 23
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--------------ccccCCCcHHHHHHHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--------------MSSFTLISSQTQYLLA 319 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--------------~~~~~~~s~~~q~~~~ 319 (442)
.+.++ + +++.|..|.+|.+| +|+++++++.+ +.+.. ...+++.+.....++.
T Consensus 183 dv~~~---------d--~~~~ssqK~lgP~G--lg~l~~s~~~l-~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~ 248 (360)
T PRK05355 183 DVSKF---------G--LIYAGAQKNIGPAG--LTIVIVREDLL-GRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAG 248 (360)
T ss_pred CHHHc---------c--EEEEeccccccCCc--eEEEEECHHHH-hhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHH
Confidence 33322 3 67788999999777 68888854433 22221 1112334444445555
Q ss_pred HHhcCchhHHH--HHHHHHHHHHHHHHHHHHHHHhCCCe-e-ec--CCceEEEEEecCCcccccChhhHHHHHHHHHHcC
Q 046900 320 SMLSNKKFTEN--YIKTNRERLQKRYQMIIEGLRSAGIE-C-LK--GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEV 393 (442)
Q Consensus 320 ~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~-~-~~--~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 393 (442)
+.|+ ++.+ -++...++.++..+++.+.|++.++. . .. ...+..+.+.++... ...++...+.++
T Consensus 249 ~aL~---~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~~------~~~~~~~~~~~~- 318 (360)
T PRK05355 249 LVFK---WLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADEE------LDKKFLAEAKAA- 318 (360)
T ss_pred HHHH---HHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCChH------HHHHHHHHHHHC-
Confidence 5554 2222 26777888888999999999988642 2 11 123334555666531 234555666555
Q ss_pred cEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHH
Q 046900 394 KLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 394 gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~ 437 (442)
|+.+.+|.. ..+.+|+|+.. .+.++++++++.|+++++++
T Consensus 319 Gi~~~~~~~----~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~~ 359 (360)
T PRK05355 319 GLVGLKGHR----SVGGMRASIYNAMPLEGVQALVDFMKEFERRH 359 (360)
T ss_pred CCcccCCCC----ccCcEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999877653 24689999862 27999999999999988764
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.5e-13 Score=131.70 Aligned_cols=298 Identities=16% Similarity=0.182 Sum_probs=178.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcC------hHHhHhhhcCcEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPG------FDRDLRWRTGIKIV 170 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~------~~~~~~~~~G~~v~ 170 (442)
+..+++.+|++++ .+..+++++++.++.+++.++ .+||.|+++...+.. +...+. ..|++++
T Consensus 129 ~~~~e~~lA~l~G----------ae~a~vv~sgtaAl~l~l~~l-~~GdeVIvs~~e~~~~ggs~~i~~~~~-~~G~~l~ 196 (464)
T PRK04311 129 DRALAALLCALTG----------AEDALVVNNNAAAVLLALNAL-AAGKEVIVSRGELVEIGGAFRIPDVMR-QAGARLV 196 (464)
T ss_pred HHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHh-CCCCEEEEcchhhhhcCcchhhHHHHH-HCCcEEE
Confidence 3577777777764 446788888889999988665 799999998764431 223455 4899999
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCC--CC--cCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP--LG--ATIQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NP--tG--~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
.++.+. ..+++++++++++ ++++|++++++|| +| ...+ +++|+++|++||+++++|...+.+.
T Consensus 197 ~v~~~~----~t~~~dle~aI~~------~TklV~~vh~sN~~i~G~~~~~d---l~eI~~lak~~gi~vivD~gsG~l~ 263 (464)
T PRK04311 197 EVGTTN----RTHLRDYEQAINE------NTALLLKVHTSNYRIEGFTKEVS---LAELAALGKEHGLPVVYDLGSGSLV 263 (464)
T ss_pred EECCCC----CCCHHHHHHhcCc------cCeEEEEEcCCCccccccCCcCC---HHHHHHHHHHcCCeEEEECCCcccc
Confidence 987643 2468999999875 7899999999998 35 4445 8889999999999999999654321
Q ss_pred ----CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHH
Q 046900 247 ----FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLAS 320 (442)
Q Consensus 247 ----~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~ 320 (442)
|+-...+.+..... .+--+++.|.+|.+|-| ..|++++ ++.+.+.+++ ......+......+..+
T Consensus 264 ~~~~~gl~~~p~~~~~l~------~GaDiv~fSg~K~LgGp--~~G~i~g-~~~li~~l~~~~~~r~lr~dk~~l~~l~~ 334 (464)
T PRK04311 264 DLSQYGLPDEPTVQELLA------AGVDLVTFSGDKLLGGP--QAGIIVG-KKELIARLKKHPLKRALRVDKLTLAALEA 334 (464)
T ss_pred cchhccCCCCCchhhHHh------cCCcEEEecCcccccCC--ceEEEEE-cHHHHHHHhhchhHHHHhcchHHHHHHHH
Confidence 11001112222222 13448889999998634 5899998 4555554442 11112222222222222
Q ss_pred ----HhcCch-hH----HHHHHHHHHHHHHHHHHHHHHHHhC---CC--eeecC----CceEEEEEecCCcccc--cChh
Q 046900 321 ----MLSNKK-FT----ENYIKTNRERLQKRYQMIIEGLRSA---GI--ECLKG----NAGLFCWMNLSPLLEE--QTRE 380 (442)
Q Consensus 321 ----~l~~~~-~~----~~~~~~~~~~~~~~~~~l~~~L~~~---g~--~~~~~----~~g~~~~~~~~~~~~~--~~~~ 380 (442)
++...+ +. .+.+....+...++.+.+.+.|++. ++ ++... .||-.--..+|...-. ....
T Consensus 335 ~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~ 414 (464)
T PRK04311 335 TLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDR 414 (464)
T ss_pred HHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCCC
Confidence 222211 10 1112233466677888888888764 22 23321 1221111111111000 0001
Q ss_pred hHHHHHHHHHHc-CcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 381 GELALWDSMLHE-VKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 381 ~~~~l~~~l~~~-~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
...++.+.|.+- ..|..+ -.++.+.+-+.++.+++++..+++|++++.
T Consensus 415 ~~~~l~~~lr~~~~~i~~r-------~~~~~~~ld~r~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 415 SLEALAARLRLLPPPVIGR-------IEDGRLLLDLRTLEEEDEERLAAALLEALN 463 (464)
T ss_pred CHHHHHHHHhcCCCCEEEE-------EECCEEEEEeCcCCHHHHHHHHHHHHHHhh
Confidence 256777666432 124443 235678898888888999999999998753
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.6e-13 Score=132.46 Aligned_cols=342 Identities=14% Similarity=0.179 Sum_probs=189.9
Q ss_pred CCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+...+.+||+..+- +.+ .++.+.+.+.+.... ...+.. ..++...+|+.+.+... .
T Consensus 95 D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~------------~~~~~~---~~~~~~~lAe~l~~~~p-----~ 154 (474)
T PLN02482 95 DVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKK------------GTSFGA---PCLLENVLAEMVIDAVP-----S 154 (474)
T ss_pred ECCCCEEEEecccccccccCCCCHHHHHHHHHHHhh------------CCCCCC---CCHHHHHHHHHHHHhCC-----C
Confidence 34456778886543 223 235555555544321 111211 23556677777765422 1
Q ss_pred CCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhh--cCcEEE------EEecCC-C----CCCcCCH
Q 046900 120 LNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWR--TGIKIV------PIHCDS-S----NNFQITP 184 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~--~G~~v~------~v~~~~-~----~~~~~d~ 184 (442)
.+.+.+++++++++..+++... ...++|+...-+|.+....+... .|.... .+|... . -.| -|+
T Consensus 155 ~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~ 233 (474)
T PLN02482 155 VEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-NDL 233 (474)
T ss_pred CCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-CCh
Confidence 4789999999999998877542 23367888888888754321100 011000 000000 0 011 168
Q ss_pred HHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCC-HHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhc
Q 046900 185 QALEAAYKEAESKDMRVRGVLITNPSNPLGATIQ-RSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQ 263 (442)
Q Consensus 185 ~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~-~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~ 263 (442)
+.+++.+.++ +.++.+|++.......|.+.+ .+-+++|.++|++||+++|.||++..+ ..+.. ...+...
T Consensus 234 ~~l~~~l~~~---~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~--ga~~~~g--- 304 (474)
T PLN02482 234 EAVKKLFEAN---KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYG--GAQEYFG--- 304 (474)
T ss_pred HHHHHHHHhC---CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcc--hHhHHhC---
Confidence 8899888642 234555554433566787665 566999999999999999999999765 33321 1111111
Q ss_pred CCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc-----ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 046900 264 YKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS-----SFTLISSQTQYLLASMLSNKKFTENYIKTNRER 338 (442)
Q Consensus 264 ~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~-----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 338 (442)
..++ +.+|+|.+| .|+.+|.+++ ++++.+.+.... ..+..++++..++.+.|+... + ....++
T Consensus 305 -v~PD----i~t~gK~lg-gG~Pigav~g-~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~---~--~~~~~~ 372 (474)
T PLN02482 305 -ITPD----LTTLGKVIG-GGLPVGAYGG-RREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQ---Q--PGTYEY 372 (474)
T ss_pred -CCCC----EEEecchhh-CCCceEEEEE-cHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHh---c--cCHHHH
Confidence 0112 347899998 8999999988 667777664211 122345666555555544211 0 112333
Q ss_pred HHHHHHHHHHHHHh----CCCeee-cCCceEEEEEecCC-cc----c--ccChhhHHHHHHHHHHcCcEEEeCCCCCCCC
Q 046900 339 LQKRYQMIIEGLRS----AGIECL-KGNAGLFCWMNLSP-LL----E--EQTREGELALWDSMLHEVKLNISPGSSCHCS 406 (442)
Q Consensus 339 ~~~~~~~l~~~L~~----~g~~~~-~~~~g~~~~~~~~~-~~----~--~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~ 406 (442)
+.++-+++.+.|++ .|+.+. ...++++- +.+.. .. + ..+......++..|+++ ||++.|.. +.
T Consensus 373 ~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~g-i~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-Gv~~~~~~-~~-- 447 (474)
T PLN02482 373 LDKITKKLIQGILEAGKKAGHEMCGGYISGMFG-FFFTEGPVYNFADAKKSDTAKFARFHRGMLEE-GVYLAPSQ-FE-- 447 (474)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEcccceEEE-EEEecCCccChhhhccCCHHHHHHHHHHHHHC-CeEEeccC-CC--
Confidence 33444444444433 345544 23345432 22211 10 0 01111245677888776 99998732 11
Q ss_pred CCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 407 EPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 407 ~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
.++ +++.. ++++++++++++.+++.+
T Consensus 448 -~~~--psl~h-t~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 448 -AGF--TSLAH-TEEDIDFTIAAAERVLAR 473 (474)
T ss_pred -CCc--CCCCC-CHHHHHHHHHHHHHHHHh
Confidence 121 45555 899999999999998864
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.3e-13 Score=129.80 Aligned_cols=291 Identities=11% Similarity=0.051 Sum_probs=192.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCC--cEEEecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhhcCcEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLN--RIVVTAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTGIKIVP 171 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~--~i~~t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~ 171 (442)
+..++.+.+-+|+.+.++ .+++ .-++|+|+|+++..++.+-.+ +...|+++.-+|..+..++.. +|++++.
T Consensus 130 ~s~~~E~~Vi~wla~L~g----~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~l-lgi~~~~ 204 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWE----IEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARM-YRMECVK 204 (470)
T ss_pred hHHHHHHHHHHHHHHHhC----CCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHh-cCCcceE
Confidence 568999999999999877 3333 368899999999987766533 234788899999999999996 9999999
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCc-----EEEEeccCCcCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNI-----HLVSDEIYSGSA 246 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~-----~vi~De~y~~~~ 246 (442)
||.++ ++.+|++.|+++|.+. ..++-+|+.+-++.++|.+=+ +++|.++|+++|+ |+.+|.+|+.+.
T Consensus 205 Vp~d~--~g~mD~~aL~~aI~~d---~~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~ 276 (470)
T PLN02263 205 VDTLV--SGEIDCADFKAKLLAN---KDKPAIINVNIGTTVKGAVDD---LDLVIKTLEECGFSQDRFYIHCDGALFGLM 276 (470)
T ss_pred eccCC--CCcCcHHHHHHHHHhC---CCCcEEEEEEecCCCCcCCCC---HHHHHHHHHHcCCccCCeeEEEeccchhhH
Confidence 99875 4689999999999752 123445566778899999977 7788888888886 999999998755
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc-------cCCCc-----HHH
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS-------FTLIS-----SQT 314 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~-------~~~~s-----~~~ 314 (442)
..-....+...+ .. .-.=+..+++|.++ ....+|.++..++.+ ..+..... ....+ .+.
T Consensus 277 lPf~~~~~~~df------~~-~vDSIsvD~HK~l~-~P~~cgvll~R~~~~-~~~~~~~~Yl~~~d~ti~gSR~g~~al~ 347 (470)
T PLN02263 277 MPFVKRAPKVTF------KK-PIGSVSVSGHKFVG-CPMPCGVQITRMEHI-NVLSSNVEYLASRDATIMGSRNGHAPIF 347 (470)
T ss_pred hhhcccccccCC------Cc-CccEEEECCccccC-CCcCEEEEEEehhhH-hhhccChHhhCCCCCCcCCCCCcHHHHH
Confidence 411000000011 00 11123468999886 678999999864433 22221111 11112 222
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec-CCceEEEEEecCCcccccChhhHHHHHHHHHHcC
Q 046900 315 QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK-GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEV 393 (442)
Q Consensus 315 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 393 (442)
.++....+. .+-+++..+...+..+++.+.|++.|+.... |... .+.+..|. ... ..+
T Consensus 348 lW~~L~~~G-----~~G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s~-~V~f~~p~---------~~~-----~~~- 406 (470)
T PLN02263 348 LWYTLNRKG-----YRGFQKEVQKCLRNAHYLKDRLREAGISAMLNELSS-TVVFERPK---------DEE-----FVR- 406 (470)
T ss_pred HHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCce-EEEEecCc---------hHH-----hhc-
Confidence 233333222 2335666677777888999999988877544 5544 44444332 111 133
Q ss_pred cEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHHHHH
Q 046900 394 KLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 394 gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~ 436 (442)
|..+.+- +..++|++.. .+.+.++++++.|++....
T Consensus 407 gW~L~~~-------~~~~Hivvmphv~~~~id~fi~DL~~~~~~ 443 (470)
T PLN02263 407 RWQLACQ-------GNIAHVVVMPSVTIEKLDYFLKELVEKRST 443 (470)
T ss_pred ceEEccC-------CCcEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence 7766641 2458888863 4789999999999887664
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.4e-13 Score=132.39 Aligned_cols=356 Identities=10% Similarity=0.018 Sum_probs=198.9
Q ss_pred CCCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCC-cchHHHHHHHHHHHHHHhCCC
Q 046900 41 YEESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDY-HGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 41 ~~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~l~~~~~~~ 115 (442)
|..+...+.+||+..+- ..+ .++.+.+.+.++.+.. ..+... .-..+.+..+|+.+.+...
T Consensus 43 ~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~------------~~~~~~~~~~~~~~~~lAe~L~~~~p-- 108 (461)
T PRK07482 43 RITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKEL------------AYYHTYVGHGTEASITLSKRIIDRAP-- 108 (461)
T ss_pred EEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhc------------CccccccccCCHHHHHHHHHHHHhCC--
Confidence 33345567788887653 222 3355555555443211 001111 1124556667777765321
Q ss_pred CccCCCcEEEecChHHHHHHHHHhhc------C-C-CCeEEEcCCCCcChHHhHhhhcCc------------EEEEEecC
Q 046900 116 AKFDLNRIVVTAGATAANELLTFILA------D-P-GDALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCD 175 (442)
Q Consensus 116 ~~~~~~~i~~t~G~~~ai~~~~~~l~------~-~-gd~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~ 175 (442)
-.-+.+++++++++|++.+++... . + ..+|+...-+|.+....+....|. .+..++..
T Consensus 109 --~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p 186 (461)
T PRK07482 109 --AGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAP 186 (461)
T ss_pred --CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCC
Confidence 124689999999999999887653 1 1 357888888887753221100110 11112111
Q ss_pred CCCC---Cc--------CCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCC
Q 046900 176 SSNN---FQ--------ITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYS 243 (442)
Q Consensus 176 ~~~~---~~--------~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~ 243 (442)
.... +. -+++.+++.+.+. ...++.+|++.......|.+. +.+-+++|.++|++||+++|.||+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~t 264 (461)
T PRK07482 187 HYYRRADAGMSEEQFSAYCADELEELILAE--GPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVT 264 (461)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHHhc--CCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEecccc
Confidence 0000 00 0346667666421 123565655554355567764 56679999999999999999999999
Q ss_pred cCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc-eeEEEeecCHHHHHHHHH---------ccccCCCcHH
Q 046900 244 GSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF-RVGTIYSYNDKVVTTARR---------MSSFTLISSQ 313 (442)
Q Consensus 244 ~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~-RiG~i~~~~~~~~~~~~~---------~~~~~~~s~~ 313 (442)
.|...+..+.. ..+.- .+.++ +++|.++ .|+ .+|.+++ .+.+.+.+.. ....+..+++
T Consensus 265 GfGRtG~~~a~-~~~gv------~PDiv---~~gKgl~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~~~~h~~T~~gnpl 332 (461)
T PRK07482 265 GFGRLGSMFGS-DHYGI------EPDLI---TVAKGLT-SAYAPLSGSIV-GEKVWDVLEQGSDEHGAIGHGWTYSGHPI 332 (461)
T ss_pred CCCcCcchhhH-HhcCC------CCCEE---EEccccc-cCccccceeee-cHHHHHHHhcccccCCccccCCCCCcCHH
Confidence 87555543221 11111 12232 4799997 785 8999888 5666665542 1123446777
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHH----hCCCeeecCCceEEEEEecCCcccc-cCh----hhHHH
Q 046900 314 TQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLR----SAGIECLKGNAGLFCWMNLSPLLEE-QTR----EGELA 384 (442)
Q Consensus 314 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~g~~~~~~~~g~~~~~~~~~~~~~-~~~----~~~~~ 384 (442)
+.+++.+.|+-.. + ....+..++.-+++.+.|+ ++++......-|+++.+++...... ..+ .....
T Consensus 333 ~~Aaa~a~L~~~~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~ 407 (461)
T PRK07482 333 CAAAALANLDILE--R---ENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQ 407 (461)
T ss_pred HHHHHHHHHHHHH--h---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHH
Confidence 7777766665211 1 0122223333344444443 3343333345566777777532110 000 11356
Q ss_pred HHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 385 LWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 385 l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
++..++++ ||++.++. ....+|+..+ .++++++++++++|.+++++.
T Consensus 408 i~~~~~~~-Gvl~~~~~-----~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 408 VSAAALER-GVIARAMP-----HGDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred HHHHHHHC-CcEEecCC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 77778776 99986532 1246888755 459999999999999999875
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.4e-13 Score=131.49 Aligned_cols=295 Identities=16% Similarity=0.137 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhh--cC-------
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWR--TG------- 166 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~--~G------- 166 (442)
.+....+|+.+.+.. ..+.+.+++++++|...+++... ...++|+...-+|.+........ .+
T Consensus 114 ~~~~~~lAe~l~~~~------~~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~ 187 (453)
T PRK07046 114 SEDAAWVGEELARRF------GLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPG 187 (453)
T ss_pred CHHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCC
Confidence 355556677666542 25789999999999998877642 23467888888888764322100 01
Q ss_pred ---c------EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEE
Q 046900 167 ---I------KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHL 236 (442)
Q Consensus 167 ---~------~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~v 236 (442)
. .+..+ .|. |++.+++.+.. .++.+|++..-....|.+. +.+-++++.++|++||+++
T Consensus 188 ~~g~~~~~~~~~~~~------~~n-d~~~l~~~l~~-----~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~ll 255 (453)
T PRK07046 188 LLGQVHDLTATTRVV------EFN-DLAALEAALAD-----GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLL 255 (453)
T ss_pred CCCCCccccCceEee------CCC-CHHHHHHHhCC-----CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEE
Confidence 0 01111 121 78888888742 2555555543244446554 4566999999999999999
Q ss_pred EEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH-----------cc
Q 046900 237 VSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR-----------MS 305 (442)
Q Consensus 237 i~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~-----------~~ 305 (442)
|.||+.. +..+-........+. +| +-+++|.+| .|+.+|.+++ ++++.+.+.. ..
T Consensus 256 I~DEV~t-fr~g~Gg~~~~~gv~-------PD----i~t~gK~lg-gG~Pi~av~g-~~~i~~~~~~~~~~~~~~~~~~~ 321 (453)
T PRK07046 256 VIDETHT-ISSGPGGYTRAHGLE-------PD----FLVVGKPIA-GGVPCAVYGF-SAELAERAQAAKASAPPGHSGIG 321 (453)
T ss_pred EEEcccc-CccCCcchhHHhCCC-------cc----ceeehhhhc-CCCcceeeee-hHHHHHHHhhccccCCCCCceeC
Confidence 9999986 322111111111111 12 236899998 8999999988 5666666542 11
Q ss_pred ccCCCcHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCC-cccc-----
Q 046900 306 SFTLISSQTQYLLASMLS---NKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSP-LLEE----- 376 (442)
Q Consensus 306 ~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~-~~~~----- 376 (442)
..+..++++..++.+.|+ ..+. .+++.++-+.+ ++.|.+.+.+.++.+....-|..+.+.+.. ....
T Consensus 322 ~T~~gnpl~~aa~~a~L~~l~~~~~-~~~~~~~g~~l---~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~ 397 (453)
T PRK07046 322 TTLSANALAMAAMRATLAEVMTEAA-YAHMLALAARL---AAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAA 397 (453)
T ss_pred CCCcccHHHHHHHHHHHHHHhcccH-HHHHHHHHHHH---HHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHh
Confidence 223456776666666554 2222 12222222333 233333334455443322222233343321 1100
Q ss_pred --cChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 377 --QTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 377 --~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
....-...++..++++ ||.+.|. ...++++... ++++++++++++.+++++.
T Consensus 398 ~~~~~~~~~~~~~~~~~~-Gv~~~~~-------~~~~~~~p~~-t~~did~~~~~~~~~l~~~ 451 (453)
T PRK07046 398 AALDPELEAALHLYLLNR-GVLITPF-------HNMMLVCPAT-TAADVDRLVAAFDACLGEL 451 (453)
T ss_pred cccCHHHHHHHHHHHHHC-CCEEecc-------cCcEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 0111234566777776 9998862 1347888864 9999999999999998765
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-12 Score=130.13 Aligned_cols=349 Identities=12% Similarity=0.076 Sum_probs=195.8
Q ss_pred CCCCCCceeeeecc--cccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCcc
Q 046900 43 ESTNPSGVIQMGLA--ENQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKF 118 (442)
Q Consensus 43 ~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~ 118 (442)
.+.....+||+..+ ...+ .++.+.+.+.++...... .....+ ..+....+|+.+.+..+ .
T Consensus 49 ~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~-------~~~~~~-----~~~~~~~lAe~L~~~~p----~ 112 (453)
T PRK06943 49 YDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEH-------AMLAGC-----THEPAIELAERLAALTG----G 112 (453)
T ss_pred EeCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCC-------cccccc-----CCHHHHHHHHHHHHhCC----C
Confidence 34556778888655 2333 335555555544321000 000011 13445566666665322 1
Q ss_pred CCCcEEEecChHHHHHHHHHhhc-------CC-CCeEEEcCCCCcChHHhHhhhcCc------------EEEEEecCCCC
Q 046900 119 DLNRIVVTAGATAANELLTFILA-------DP-GDALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCDSSN 178 (442)
Q Consensus 119 ~~~~i~~t~G~~~ai~~~~~~l~-------~~-gd~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~~~~ 178 (442)
.-+.++++++++++++.+++... .+ ..+|+...-+|.+....+....|- .+..++.....
T Consensus 113 ~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~ 192 (453)
T PRK06943 113 TLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDAR 192 (453)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCcc
Confidence 22589999999999999887652 12 357888888887754221101111 11222221110
Q ss_pred C--Cc--------CCHHHHHHHHHHHHhcCCceeEEEEeC-CCCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 179 N--FQ--------ITPQALEAAYKEAESKDMRVRGVLITN-PSNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 179 ~--~~--------~d~~~l~~~l~~~~~~~~~~~~v~l~~-P~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
+ +. -+++.+++.+.+ .+.++.+|++.. ...-.|.+ .+.+-+++|.++|++||+++|.||+...+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~G 269 (453)
T PRK06943 193 GARPGETAADVAARALADVRRLFAE---RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCG 269 (453)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCC
Confidence 0 00 124666666653 234666666654 25666764 566779999999999999999999998865
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH--------ccccCCCcHHHHHH
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR--------MSSFTLISSQTQYL 317 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~--------~~~~~~~s~~~q~~ 317 (442)
..|..+ ....+.- .+.+ -+++|.++ .| +.+|.+++ ++++.+.+.. ....+..++++.++
T Consensus 270 RtG~~f-a~~~~gv------~PDi---vt~gKgl~-gG~~Pi~av~~-~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aa 337 (453)
T PRK06943 270 RTGTFF-ACEQAGV------WPDF---LCLSKGIS-GGYLPLSLVLS-RDAIFAAFYDDDVTRGFLHSHSYTGNPLACRA 337 (453)
T ss_pred CCcchh-HHHhCCC------CCCe---Eeeehhhc-cCcccceEEEE-cHHHHHhhcccCccCCccCCCCCCCCHHHHHH
Confidence 444322 1111111 1223 35699998 88 59999999 5666666542 12234457777666
Q ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcC
Q 046900 318 LASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA----GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEV 393 (442)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 393 (442)
+.+.|+-.+ + ....++.++.-+++.+.|+++ ++. ....-|+++-+++.... .........+...++++
T Consensus 338 a~a~L~~i~---~--~~l~~~~~~~G~~l~~~L~~l~~~~~v~-~vrG~Gl~~gvel~~~~-~~~~~~~~~i~~~~~~~- 409 (453)
T PRK06943 338 ALATLDLFA---E--DDVLARNARKSARLRAALAPLAAHPQVR-HLRQRGTIFAFDVALDG-DAARTFSRRFFEAALER- 409 (453)
T ss_pred HHHHHHHHH---h--cCHHHHHHHHHHHHHHHHHHHhcCCCEE-eEeccccEEEEEEccCC-CcchHHHHHHHHHHHHC-
Confidence 666655211 1 112223333333444444332 232 22345567777764211 11111245677777776
Q ss_pred cEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 394 KLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 394 gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
||++.+.. ..+|++.. .++++++++++++|.+++++.
T Consensus 410 Gll~~~~g-------~~l~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 410 ELLLRPIG-------TTVYLMPPYVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred CcEEEecC-------CEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 99997631 35899854 349999999999999999875
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-12 Score=130.36 Aligned_cols=309 Identities=16% Similarity=0.129 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHH-hHhhhcCcE-------
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDR-DLRWRTGIK------- 168 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~-~~~~~~G~~------- 168 (442)
+.+..+++.+.+..+ -..+.+++++++++++..+++... .....|+...-+|.+... .+.. .|..
T Consensus 113 ~~~~~lae~L~~~~p----~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~-~~~~~~~~~~~ 187 (459)
T PRK06082 113 ETAIECAEKLTEIAG----GELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISV-GGEACFRQGMG 187 (459)
T ss_pred HHHHHHHHHHHHhCC----CCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhh-cCCcccccCCC
Confidence 455566666665422 123689999999999999877542 223678877777776543 2221 2211
Q ss_pred -----EEEEecCCC--CCCc-CC------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCc
Q 046900 169 -----IVPIHCDSS--NNFQ-IT------PQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNI 234 (442)
Q Consensus 169 -----v~~v~~~~~--~~~~-~d------~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~ 234 (442)
+..+|.... ..|. .| ++.+++.+.+ ..++.+|++....+..+.+.+.+-+++|.++|++||+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~----~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~ 263 (459)
T PRK06082 188 PLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK----EGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNV 263 (459)
T ss_pred CCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhc----CCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 122221110 0011 11 2446666642 1245555554335544456677789999999999999
Q ss_pred EEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH--ccccCCCc
Q 046900 235 HLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR--MSSFTLIS 311 (442)
Q Consensus 235 ~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~--~~~~~~~s 311 (442)
++|.||++..+...|..+. ...+.- .+| ++ +++|.+| .| +.+|.+++ .+.+...... ....+..+
T Consensus 264 llI~DEV~tG~GRtG~~fa-~e~~gv-----~PD-iv---~~gKgl~-gG~~P~~av~~-~~~i~~~~~~~~~~~T~~gn 331 (459)
T PRK06082 264 LLIIDEIPNGMGRTGEWFT-HQAYGI-----EPD-IL---CIGKGLG-GGLVPIAAMIT-KDKYNTAAQISLGHYTHEKS 331 (459)
T ss_pred EEEEechhhCCCccchhhH-hHhhCC-----CCC-EE---Eeccccc-CCCCcceEEEE-cHHHHhhccCCCCCCCCCcC
Confidence 9999999987544443211 111111 122 22 4899998 77 59999998 4555543321 11234456
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh----CCCeeecCCceEEEEEecCCcccc--cChhhHHHH
Q 046900 312 SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS----AGIECLKGNAGLFCWMNLSPLLEE--QTREGELAL 385 (442)
Q Consensus 312 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~l 385 (442)
+++.+++.+.|+-. ++ ....+..+++-+++.+.|++ +++......-|+++.+++...... ........+
T Consensus 332 pl~~aaa~a~L~~l---~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~ 406 (459)
T PRK06082 332 PLGCAAALATIEVI---EQ--EGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAV 406 (459)
T ss_pred HHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHH
Confidence 77666666655421 11 11233334444444444433 333222234456777777431110 111124567
Q ss_pred HHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 386 WDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 386 ~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
...++++ ||++.+. ....+|++.. .+++++++++++++.+++.+..+.
T Consensus 407 ~~~~~~~-Gvl~~~~------~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~~~ 455 (459)
T PRK06082 407 LYRCLNN-GLSFKVS------QGNVIQLSPPLIITREELTQALAILEEAIAKICQD 455 (459)
T ss_pred HHHHHhC-CCEEEec------CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhhh
Confidence 7777776 9998763 1357999876 458999999999999999887554
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.7e-13 Score=131.81 Aligned_cols=346 Identities=13% Similarity=0.098 Sum_probs=191.6
Q ss_pred CCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCc
Q 046900 42 EESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAK 117 (442)
Q Consensus 42 ~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~ 117 (442)
..+.....+||+..+. ..+ .++.+.+.+.+.... ...+. -..+.+..+|+.+.+..+
T Consensus 47 l~D~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~------------~~~~~---~~~~~~~~la~~L~~~~~---- 107 (433)
T PRK00615 47 FIDSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAER------------GTSYG---LTSEQEILFAEELFSYLG---- 107 (433)
T ss_pred EEECCCCEEEEcccchhccccCCCCHHHHHHHHHHHHh------------CCCCC---CCCHHHHHHHHHHHHhCC----
Confidence 3344566788886553 223 335555555544321 01111 112345556666654322
Q ss_pred cCCCcEEEecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHh----HhhhcCcEEEE----EecCC--CC----CCc
Q 046900 118 FDLNRIVVTAGATAANELLTFILAD--PGDALLVPTPYYPGFDRD----LRWRTGIKIVP----IHCDS--SN----NFQ 181 (442)
Q Consensus 118 ~~~~~i~~t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~----~~~~~G~~v~~----v~~~~--~~----~~~ 181 (442)
...+.+.+++++++|++.+++.... ....|+...-+|.+.... ... .+-.... ..... .. .|
T Consensus 108 ~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~- 185 (433)
T PRK00615 108 LEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISF-SETSLDTLTHLVDTDLAHPLTLSLPY- 185 (433)
T ss_pred CCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCccccc-CCCCcCcCCCCCCCCCCCCCeEeCCC-
Confidence 1235899999999999998876522 235788778888775421 110 1100000 00000 00 01
Q ss_pred CCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCC-HHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHh
Q 046900 182 ITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQ-RSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILE 260 (442)
Q Consensus 182 ~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~-~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~ 260 (442)
-|.+.+++.+.+. +.++.+|++.......|...+ .+-+++|.++|++||+++|.||++..+ ..+..+ ..+...
T Consensus 186 ~d~~~l~~~l~~~---~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~g--a~~~~g 259 (433)
T PRK00615 186 NDFQIFQTVMNSL---GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGG--AAAIYH 259 (433)
T ss_pred CCHHHHHHHHHhc---CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhH--HHHhcC
Confidence 2678888888643 234555444433555677664 566999999999999999999999765 333211 111100
Q ss_pred hhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc-----ccCCCcHHHHHHHHHHhcCchhHHHHHHHH
Q 046900 261 ARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS-----SFTLISSQTQYLLASMLSNKKFTENYIKTN 335 (442)
Q Consensus 261 ~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~-----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 335 (442)
..++ + .+|+|++| .|+.+|++++ ++.+.+.+.... ..+..+++..+++.+.|+-.. + ...
T Consensus 260 ----v~PD-i---~~~gK~lg-gG~p~~av~~-~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~---~--~~~ 324 (433)
T PRK00615 260 ----VKPD-I---TVYGKILG-GGLPAAAVVA-HKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCR---E--QGF 324 (433)
T ss_pred ----CCCC-e---EEEccccc-CCcceeeeee-cHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHh---c--ccH
Confidence 0122 2 25899998 7888999999 566776664211 123346666666555554211 1 112
Q ss_pred HHHHHHHHHHH----HHHHHhCCCeeecCCceEEEEEecCCcccc-------cChhhHHHHHHHHHHcCcEEEeCCCCCC
Q 046900 336 RERLQKRYQMI----IEGLRSAGIECLKGNAGLFCWMNLSPLLEE-------QTREGELALWDSMLHEVKLNISPGSSCH 404 (442)
Q Consensus 336 ~~~~~~~~~~l----~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~l~~~l~~~~gi~v~pg~~f~ 404 (442)
.+.++++-+++ .+.+.+.|+.+.....|.++.+.+...... ........++..|+++ ||.+.|... .
T Consensus 325 ~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~-~ 402 (433)
T PRK00615 325 YTQLSTLEQNFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSK-GVYLSPSPF-E 402 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHC-CeeecCccc-c
Confidence 23333333333 344444455433222566777777532110 0112245778888777 999987532 1
Q ss_pred CCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 405 CSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 405 ~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.+ =++... ++++++++++++.+++++.
T Consensus 403 ----~~-~ls~~h-t~~did~~~~a~~~~~~~~ 429 (433)
T PRK00615 403 ----AS-FLSSAH-SMENLDYAQNVLIDSLEKV 429 (433)
T ss_pred ----cc-ceecCC-CHHHHHHHHHHHHHHHHHH
Confidence 11 256666 8999999999999998874
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-12 Score=127.96 Aligned_cols=364 Identities=13% Similarity=0.143 Sum_probs=199.5
Q ss_pred CCCCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|..+...+.+||+..+. ..+ .++.+.+.+.++..... ..+.. .-..+.+..+|+.+.+...
T Consensus 23 ~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~-----------~~~~~-~~~~~~~~~lae~L~~~~p-- 88 (447)
T PRK06917 23 VYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVS-----------FVYRS-QFTSEPAEKLAKKLSDLSP-- 88 (447)
T ss_pred eEEEeCCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCc-----------Ccccc-ccCCHHHHHHHHHHHHhCC--
Confidence 344445567788986552 223 33555555554432110 00100 0113555567777665321
Q ss_pred CccCCCcEEEecChHHHHHHHHHhhcC-------C-CCeEEEcCCCCcChHHhHhhhcCc------------EEEEEecC
Q 046900 116 AKFDLNRIVVTAGATAANELLTFILAD-------P-GDALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCD 175 (442)
Q Consensus 116 ~~~~~~~i~~t~G~~~ai~~~~~~l~~-------~-gd~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~ 175 (442)
-..+.+++++++++|++.+++.... + ..+|+...-+|.+....+....|. .+..++..
T Consensus 89 --~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p 166 (447)
T PRK06917 89 --GDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAP 166 (447)
T ss_pred --CCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCC
Confidence 1235799999999999998876521 2 367888888887765432211221 11112211
Q ss_pred CCCC--CcC--------CHHHHHHHHHHHHhcCCceeEEEEeCCC-CCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCC
Q 046900 176 SSNN--FQI--------TPQALEAAYKEAESKDMRVRGVLITNPS-NPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYS 243 (442)
Q Consensus 176 ~~~~--~~~--------d~~~l~~~l~~~~~~~~~~~~v~l~~P~-NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~ 243 (442)
.... +.- +.+.+++.+.+.. ..++.+|++..-. +-.|.+ .+.+-+++|.++|++||+++|.||++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~t 244 (447)
T PRK06917 167 YCYRCPVQKVYPTCQLACATELETAIERIG--AEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMT 244 (447)
T ss_pred cccccccCCChHHHHHHHHHHHHHHHHhcC--CCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence 1000 001 2355666665321 1256566655323 344554 467779999999999999999999998
Q ss_pred cCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc-eeEEEeecCHHHHHHHHHc------cccCCCcHHHHH
Q 046900 244 GSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF-RVGTIYSYNDKVVTTARRM------SSFTLISSQTQY 316 (442)
Q Consensus 244 ~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~-RiG~i~~~~~~~~~~~~~~------~~~~~~s~~~q~ 316 (442)
.+...+..+. ...+.- .++ +-+++|.+| .|+ .+|.+++ .+.+.+.+... ...+..++++.+
T Consensus 245 GfGRtG~~~a-~~~~gv-----~PD----i~~~gK~l~-~G~~Pi~a~~~-~~~i~~~~~~~~~~~~~~~T~~gnpl~~a 312 (447)
T PRK06917 245 GLGRTGAMFA-MEHWGV-----EPD----IMTLGKGLG-AGYTPIAATVV-SDRVMEPILRGSRSIMSGHTLSANPLSAA 312 (447)
T ss_pred CcCcccchhh-HHhcCC-----CCC----EEEeeehhc-cCCcceEEEEE-cHHHHHHHhccCcccccccCCCCCHHHHH
Confidence 7543343211 111111 122 247799998 785 8999999 56666665421 122345677777
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh----CCCeeecCCceEEEEEecCCcccc-----cChhhHHHHHH
Q 046900 317 LLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS----AGIECLKGNAGLFCWMNLSPLLEE-----QTREGELALWD 387 (442)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~l~~ 387 (442)
++.+.|+... + ....+.+++.-++|.+.|++ .++......-|+++.+++...... ........++.
T Consensus 313 aa~a~l~~l~---~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~ 387 (447)
T PRK06917 313 TALAVLEYME---K--HNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELIS 387 (447)
T ss_pred HHHHHHHHHH---H--CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHH
Confidence 6666665211 1 11223333333444444433 333222334556666666321100 00112456777
Q ss_pred HHHHcCcEEEeCCCC-CCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 388 SMLHEVKLNISPGSS-CHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 388 ~l~~~~gi~v~pg~~-f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
.++++ ||++.|+.. ......+.+|++.. .++++++++++++|.+++++..+
T Consensus 388 ~~~~~-Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 440 (447)
T PRK06917 388 VAAKN-GLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEMMQ 440 (447)
T ss_pred HHHhC-CcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 77776 999987421 11112357999876 34999999999999999987643
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-13 Score=131.42 Aligned_cols=265 Identities=15% Similarity=0.122 Sum_probs=165.3
Q ss_pred CCcEEEecChHHHHHHHHHhhc-CCC-CeEEEcCCCCcChHHhHhhhcC-------cE-----EEEEecCCCCCCcCCHH
Q 046900 120 LNRIVVTAGATAANELLTFILA-DPG-DALLVPTPYYPGFDRDLRWRTG-------IK-----IVPIHCDSSNNFQITPQ 185 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~-~~g-d~Vl~~~p~y~~~~~~~~~~~G-------~~-----v~~v~~~~~~~~~~d~~ 185 (442)
.+.+++++++++|++.+++... .+| +.|+...-+|.+....+....+ .. +..+| | .|++
T Consensus 81 ~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~------~-~d~~ 153 (364)
T PRK04013 81 YEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIP------F-NDVE 153 (364)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEec------C-CCHH
Confidence 4689999999999999987663 234 7899998888775433221111 11 11121 1 1577
Q ss_pred HHHHHHHHHHhcCCceeEEEEeCCCCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcC
Q 046900 186 ALEAAYKEAESKDMRVRGVLITNPSNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQY 264 (442)
Q Consensus 186 ~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~ 264 (442)
.+++.+.+ ++.+|++.......|.. .+.+-++++.++|++||+++|+||++..+ ..|..+ ....+.
T Consensus 154 ~l~~~i~~------~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~-a~~~~g----- 220 (364)
T PRK04013 154 AAKEAITK------ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFL-AIEHYK----- 220 (364)
T ss_pred HHHHHhcC------CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchh-HHHhcC-----
Confidence 88877753 67777766555555654 45667999999999999999999999876 444321 211111
Q ss_pred CCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 046900 265 KDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQ 344 (442)
Q Consensus 265 ~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 344 (442)
..+. +-+++|.+| .|+.+|.++...+ +.. ....+.+..++++.+++.+.|+-.+- +..+++.++.
T Consensus 221 -v~PD---iv~~gK~lg-gG~P~~a~~~~~~-~~~--~~~~~T~~gnp~~~aaa~a~l~~i~~-~~l~~~~~~~------ 285 (364)
T PRK04013 221 -VEPD---IVTMGKGIG-NGVPVSLTLTNFD-VER--GKHGSTFGGNPLACKAVAVTLRILRR-ERLVEKAGEK------ 285 (364)
T ss_pred -CCCC---EEEeccccc-CCceeEEEEeccc-ccC--CCcCCCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHH------
Confidence 1122 335799998 7899999998433 321 11223345677777776666653210 1112222221
Q ss_pred HHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHH
Q 046900 345 MIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTL 423 (442)
Q Consensus 345 ~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i 423 (442)
+ +.+.. .+-.....-|+++-+++... ...+...++++ |+++.+. +...+|+... .++++++
T Consensus 286 -l-~~l~~-~~v~~vRG~Gl~~gve~~~~--------~~~i~~~~~~~-Gll~~~~------g~~vlr~~Ppl~it~~~i 347 (364)
T PRK04013 286 -F-IEIKG-ERVVTTRGRGLMIGIVLKKP--------VGKYVEELQNR-GYLVHTA------GQRVIRLLPPLIISKDTM 347 (364)
T ss_pred -H-HHhcc-CcceeeeeCcEEEEEEeCCc--------HHHHHHHHHhC-CcEEeeC------CCCEEEEeCCcccCHHHH
Confidence 2 22221 11111234567888888531 44677777776 9998763 2357999886 4589999
Q ss_pred HHHHHHHHHHHHHH
Q 046900 424 EVALKRIHNFMQKR 437 (442)
Q Consensus 424 ~~~l~~l~~~l~~~ 437 (442)
++++++|.+++.+.
T Consensus 348 ~~~~~~l~~~l~~~ 361 (364)
T PRK04013 348 EEAKSAIEGVINDI 361 (364)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999764
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-12 Score=130.71 Aligned_cols=307 Identities=14% Similarity=0.130 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC-------C-CCeEEEcCCCCcChHHhHhhhcC----
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD-------P-GDALLVPTPYYPGFDRDLRWRTG---- 166 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~-------~-gd~Vl~~~p~y~~~~~~~~~~~G---- 166 (442)
+....+|+.+.+... -..+.++++++++++++.+++.... + ..+|+...-+|.+....+....|
T Consensus 89 ~~~~~la~~l~~~~p----~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~ 164 (442)
T PRK13360 89 PKAFELANRIAEIAP----GGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPN 164 (442)
T ss_pred HHHHHHHHHHHHhCC----CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhh
Confidence 445566666654321 1235899999999999998775421 1 35788888888775432110011
Q ss_pred --------cEEEEEecCC---CCCCcC--------CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHH
Q 046900 167 --------IKIVPIHCDS---SNNFQI--------TPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELL 226 (442)
Q Consensus 167 --------~~v~~v~~~~---~~~~~~--------d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~ 226 (442)
..+..+|... ...|.. ..+.|++.+... ...++.+|++.......|.+. +.+-+++|.
T Consensus 165 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~aavivEpi~g~~G~~~~~~~fl~~lr 242 (442)
T PRK13360 165 RKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLH--DASTIAAVIVEPVAGSTGVLIPPKGYLQRLR 242 (442)
T ss_pred hhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCCCCCccCCHHHHHHHH
Confidence 1122233211 001111 135677776532 113454444443356677764 566699999
Q ss_pred HHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH--
Q 046900 227 DFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR-- 303 (442)
Q Consensus 227 ~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~-- 303 (442)
++|++|++++|+||++..+...|..+. .+.. . ..++ +.+|+|.++ .| +.+|.+++ ++.+.+.+..
T Consensus 243 ~lc~~~g~llI~DEv~tG~GrtG~~~a--~~~~-g---v~PD----ivt~gK~l~-gG~~P~gav~~-~~~i~~~~~~~~ 310 (442)
T PRK13360 243 EICDKHGILLIFDEVITGFGRLGAPFA--AQYF-G---VTPD----LLTCAKGLT-NGAIPMGAVFV-SSEIHDAFMQGP 310 (442)
T ss_pred HHHHHcCCEEEEechhhCCCCCccchh--hhhc-C---CCCc----eeeeeeccc-cCccceEEEEE-cHHHHHHhhcCC
Confidence 999999999999999976543343211 1110 0 0122 237899997 67 78999988 5666665532
Q ss_pred -------ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-Ceee--cCCceEEEEEecCCc
Q 046900 304 -------MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAG-IECL--KGNAGLFCWMNLSPL 373 (442)
Q Consensus 304 -------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~--~~~~g~~~~~~~~~~ 373 (442)
....+..++++..++.+.|+- +++ ....+..++.-+++.+.|+++. .... ....|++.-+.+...
T Consensus 311 ~~~~~~~~~~T~~g~pl~~aaa~a~L~~---l~~--~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~ 385 (442)
T PRK13360 311 EAGIEFFHGYTYSGHPLACAAALATLDL---YER--EGLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPR 385 (442)
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHH---HHh--CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecC
Confidence 111234566666666665542 111 1233444444455555555431 1111 122344544555321
Q ss_pred ccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 374 LEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 374 ~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.... ...+.+++..++++ ||++.++ ...+|++.. .++++++++++++|.+++++.
T Consensus 386 ~~~~-~~~~~~~~~~l~~~-Gvl~~~~-------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 386 DGKP-GKRAYEVFLKCFEK-GLMIRYT-------GDILALSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred CCCc-chhHHHHHHHHHHC-CcEEEec-------CCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 1111 11346777888776 9999763 246999965 348999999999999998653
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-12 Score=128.95 Aligned_cols=347 Identities=14% Similarity=0.140 Sum_probs=192.1
Q ss_pred CCCCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|..+.....+||+..+. ..+ ..+.+.+.+.++.... ..+.- ..+....+|+.+.+...
T Consensus 45 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~------------~~~~~---~~~~~~~la~~l~~~~p-- 107 (428)
T PRK12389 45 AYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENG------------VLYGT---PTELEIEFAKMLKEAIP-- 107 (428)
T ss_pred CEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhC------------CccCC---CCHHHHHHHHHHHHhCC--
Confidence 333445567788886553 223 3355555555443210 01111 12445566666654321
Q ss_pred CccCCCcEEEecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhhcCcEEEE--------EecCC-CCCC---c
Q 046900 116 AKFDLNRIVVTAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTGIKIVP--------IHCDS-SNNF---Q 181 (442)
Q Consensus 116 ~~~~~~~i~~t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~--------v~~~~-~~~~---~ 181 (442)
..+.+++++++++|++.+++.... ....|+...-+|.+....+....|..... ++... .+-. .
T Consensus 108 ---~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (428)
T PRK12389 108 ---SLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPF 184 (428)
T ss_pred ---CCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCC
Confidence 246899999999999998875422 23678888888877654332112211110 00000 0000 1
Q ss_pred CCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHh
Q 046900 182 ITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILE 260 (442)
Q Consensus 182 ~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~ 260 (442)
.|++.+++.+.++ +.++.+|++..-....|.+. +.+-+++|.++|++||+++|.||++..+ ..+.. ...+...
T Consensus 185 ~d~~~l~~~l~~~---~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~--~a~~~~g 258 (428)
T PRK12389 185 NDIEALKEALDKW---GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYG--GAQDLLG 258 (428)
T ss_pred CCHHHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcc--hhhHHhC
Confidence 2688898888643 23555555554466678765 5666999999999999999999999876 22211 1111110
Q ss_pred hhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH-----ccccCCCcHHHHHHHHHHhcCchhHHHHHHHH
Q 046900 261 ARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR-----MSSFTLISSQTQYLLASMLSNKKFTENYIKTN 335 (442)
Q Consensus 261 ~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~-----~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 335 (442)
..++ +-+++|.+| .|+.+|.+++ ++.+.+.+.. ....+..++++.+++.+.|+... + ...
T Consensus 259 ----v~PD----ivt~gK~lg-gG~Pi~av~~-~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~---~--~~l 323 (428)
T PRK12389 259 ----VEPD----LTALGKIIG-GGLPIGAYGG-RKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQ---Q--EGV 323 (428)
T ss_pred ----CCCC----eeeechhhc-CCCceeEEeE-HHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHh---c--ccH
Confidence 0122 247899998 8899999988 5667766642 11224557777666666655211 0 012
Q ss_pred HHHHHHHHHHHHHHHHh----CCCeeec-CCceEEEEEecCCcccc-------cChhhHHHHHHHHHHcCcEEEeCCCCC
Q 046900 336 RERLQKRYQMIIEGLRS----AGIECLK-GNAGLFCWMNLSPLLEE-------QTREGELALWDSMLHEVKLNISPGSSC 403 (442)
Q Consensus 336 ~~~~~~~~~~l~~~L~~----~g~~~~~-~~~g~~~~~~~~~~~~~-------~~~~~~~~l~~~l~~~~gi~v~pg~~f 403 (442)
.+++++.-+++.+.|++ +++.... ..+|++ -+.+...... ........+...++++ ||.+.+..
T Consensus 324 ~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~-- 399 (428)
T PRK12389 324 YEKLDRLGAMLEEGILEAAEKHGITITINRLKGAL-TVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQ-GINLAPSK-- 399 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcEE-EEEEeCCCCCChhhhcccCHHHHHHHHHHHHHC-CcEeecCC--
Confidence 22333333444444432 3432221 233433 2443221000 0111245677777776 99998742
Q ss_pred CCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 404 HCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 404 ~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
.+.+.+++.. ++++++++++++.+++++
T Consensus 400 ----~~~~~~~l~~-t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 400 ----YEAWFLTTAH-TEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred ----CCCeeecCCC-CHHHHHHHHHHHHHHHHh
Confidence 1224566555 899999999999998864
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-12 Score=129.45 Aligned_cols=307 Identities=13% Similarity=0.135 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC-------C-CCeEEEcCCCCcChHHhHhhhcCc---
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD-------P-GDALLVPTPYYPGFDRDLRWRTGI--- 167 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~-------~-gd~Vl~~~p~y~~~~~~~~~~~G~--- 167 (442)
+....+|+.+.+... ...+.|+++++++++++.+++.... + ..+|+...-+|.+....+....|.
T Consensus 92 ~~~~~la~~L~~~~p----~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~ 167 (445)
T PRK09221 92 PLAFELAERLAELAP----GGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNN 167 (445)
T ss_pred HHHHHHHHHHHHhCC----CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhh
Confidence 344456666654321 1236899999999999998875431 1 257888888887653221100110
Q ss_pred ---------EEEEEecCC---CCCCcC--------CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHH
Q 046900 168 ---------KIVPIHCDS---SNNFQI--------TPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELL 226 (442)
Q Consensus 168 ---------~v~~v~~~~---~~~~~~--------d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~ 226 (442)
.+..+|... ...+.. ..+.+++.++... ..++.+|++..-....|... +.+-+++|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~iAavi~Epv~g~~G~~~~~~~yl~~l~ 245 (445)
T PRK09221 168 RKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHD--ASTIAAVIVEPMAGSAGVLVPPKGYLQRLR 245 (445)
T ss_pred hhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcC--CCcEEEEEEecccCCCCcccCCHHHHHHHH
Confidence 112222110 000111 1346666665321 13555556554466678765 455699999
Q ss_pred HHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH--
Q 046900 227 DFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR-- 303 (442)
Q Consensus 227 ~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~-- 303 (442)
++|++||+++|.||++..+...|..+ ....+.- .++ +.+++|.++ .| +.+|.+++ ++.+.+.+..
T Consensus 246 ~lc~~~g~llI~DEV~tG~GRtG~~~-~~~~~gv-----~PD----i~~~gK~l~-gG~~Pi~av~~-~~~i~~~~~~~~ 313 (445)
T PRK09221 246 EICDKHGILLIFDEVITGFGRLGAAF-AAERFGV-----TPD----IITFAKGLT-NGAIPMGAVIA-SDEIYDAFMQGP 313 (445)
T ss_pred HHHHHcCCEEEEeehhhCCCcCchhh-HHHhcCC-----CCC----EEEeccccc-cCcccceeeEE-cHHHHHhhccCc
Confidence 99999999999999997654334321 1111110 122 347899997 66 67999988 5666665432
Q ss_pred -------ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCee--ecCCceEEEEEecCCc
Q 046900 304 -------MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIEC--LKGNAGLFCWMNLSPL 373 (442)
Q Consensus 304 -------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~~~~~g~~~~~~~~~~ 373 (442)
....+..++++..++.+.|+.. ++ ....++.++.-+++.+.|+++ +... ....-|++.-+++...
T Consensus 314 ~~~~~~~~~~T~~~~pl~~aaa~a~L~~i---~~--~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~ 388 (445)
T PRK09221 314 EYAIEFFHGYTYSAHPVACAAGLATLDIY---RE--EDLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPR 388 (445)
T ss_pred ccccccccccCCCcCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEecc
Confidence 1112345666665555555421 11 123344555555666666543 2111 1123345555665431
Q ss_pred ccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 374 LEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 374 ~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.... ......+.+.++++ ||.+.++ ...+|++.. .++++++++++++|.+++.+.
T Consensus 389 ~~~~-~~~~~~~~~~~~~~-Gv~~~~~-------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 389 PGAP-GARGYEAFMKCFEK-GLLVRYT-------GDTIALSPPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred cccc-cchHHHHHHHHHHC-CeEEeec-------CCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 1100 01245677888776 9999763 246999865 448999999999999998753
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-12 Score=123.80 Aligned_cols=348 Identities=14% Similarity=0.190 Sum_probs=216.5
Q ss_pred ceeeeeccccc-ccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEec
Q 046900 49 GVIQMGLAENQ-VSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA 127 (442)
Q Consensus 49 ~~i~l~~~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~ 127 (442)
=+|||-+..-. .|.+.....+... -..|.....+..|.+++++.++ .+.++.|.
T Consensus 42 V~IDLrSDTgT~apS~~m~aAM~~G---------------DD~Y~gdpSv~~Lee~vael~G----------~E~alpth 96 (467)
T TIGR02617 42 VFIDLLTDSGTGAVTQSMQAAMMRG---------------DEAYSGSRSYYALAESVKNIFG----------YQYTIPTH 96 (467)
T ss_pred eEEECccCCCCCCCCHHHHHHHHcC---------------CcccccCchHHHHHHHHHHHhC----------CceEEECC
Confidence 34888766544 2444444444431 1347766778899999999886 44578887
Q ss_pred ChHHHHHHHHHhhcC-CCCeEEEcCC-------C-CcChHHhHhhhcCcEEEEEecCC------CC--CCcCCHHHHHHH
Q 046900 128 GATAANELLTFILAD-PGDALLVPTP-------Y-YPGFDRDLRWRTGIKIVPIHCDS------SN--NFQITPQALEAA 190 (442)
Q Consensus 128 G~~~ai~~~~~~l~~-~gd~Vl~~~p-------~-y~~~~~~~~~~~G~~v~~v~~~~------~~--~~~~d~~~l~~~ 190 (442)
.+..+-.+++..+++ +||.+++..+ . |......+. ..|+.++.++.++ .+ +-.+|++.|++.
T Consensus 97 qGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~-l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~ 175 (467)
T TIGR02617 97 QGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQ-INGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERG 175 (467)
T ss_pred CCchHHHHHHHhhcccccccccccccccccceEEEEecchHHHH-HcCceeecccchhhcccccCCCCCCCcCHHHHHHH
Confidence 778999999999988 7887776553 1 221223344 3788887764331 11 235899999999
Q ss_pred HHHHHhcCCceeEEEEeCCCCC-CCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc-CCC------CCCCcccHHHHHhhh
Q 046900 191 YKEAESKDMRVRGVLITNPSNP-LGATIQRSVLEELLDFATRKNIHLVSDEIYSG-SAF------SSSEFVSIAEILEAR 262 (442)
Q Consensus 191 l~~~~~~~~~~~~v~l~~P~NP-tG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~-~~~------~~~~~~s~~~~~~~~ 262 (442)
|++... .++..+...--+|- -|+++|.+.++++.++|++||+.++.|.+-.. ..+ .+..-.|+.++..++
T Consensus 176 I~~~g~--~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~ 253 (467)
T TIGR02617 176 IEEVGP--NNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRET 253 (467)
T ss_pred HhhcCC--CCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHh
Confidence 986311 12222222212343 58899999999999999999999999987321 011 011234666654321
Q ss_pred cCCCCCcEEEEecCcccCCCC-CceeEEEeecCH---HHHHHHHH-------ccccCCCcHHHHHHHHHHhcCchhHHHH
Q 046900 263 QYKDSERVHIVYSLSKDLGLP-GFRVGTIYSYND---KVVTTARR-------MSSFTLISSQTQYLLASMLSNKKFTENY 331 (442)
Q Consensus 263 ~~~~~~~vi~~~S~SK~~g~~-G~RiG~i~~~~~---~~~~~~~~-------~~~~~~~s~~~q~~~~~~l~~~~~~~~~ 331 (442)
. .+-. .+.-|+||.+|.| | |+++++++ .+.+.++. +.++++++.-...+++.-|... ...++
T Consensus 254 ~--~~aD-svt~slsKglgApvG---g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~-~~~~y 326 (467)
T TIGR02617 254 Y--KYAD-MLAMSAKKDAMVPMG---GLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDG-MNLDW 326 (467)
T ss_pred h--ccCC-EEEEEcCCCCCCccc---ceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhc-ccHHH
Confidence 0 0112 3456999999866 4 67777776 33344333 3344566665566665555543 22445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCccccc--ChhhHHHHHHHHHHcCcEEEe-CCCCCCCC--
Q 046900 332 IKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQ--TREGELALWDSMLHEVKLNIS-PGSSCHCS-- 406 (442)
Q Consensus 332 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~gi~v~-pg~~f~~~-- 406 (442)
+.....+ -++|.+.|.+.|+.+.. .||.-++++....+..- ....+..++.+|..+.||--. -|+.....
T Consensus 327 l~~ri~q----v~yl~~~L~~~Gvpi~~-~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~ 401 (467)
T TIGR02617 327 LAYRINQ----VQYLVNGLEEIGVVCQQ-AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDP 401 (467)
T ss_pred HHHHHHH----HHHHHHHHHhCCCcEEe-cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCC
Confidence 5544443 36888999999999988 88878888754432211 112478889999888898733 33331110
Q ss_pred ------C--CCEEEEEee--cCCHHHHHHHHHHHHHHHHH
Q 046900 407 ------E--PGWFRVCFA--NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 407 ------~--~~~iRls~~--~~~~e~i~~~l~~l~~~l~~ 436 (442)
. -..+||++. .-+.+.++-..++|..+.++
T Consensus 402 ~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 402 KTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred CCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 0 146999986 22788899999988887664
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-12 Score=130.26 Aligned_cols=311 Identities=12% Similarity=0.076 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHHhCCCC-ccCCCcEEEecChHHHHHHHHHhhcC-------C-CCeEEEcCCCCcChHHhHhhhcCc--
Q 046900 99 SFRQAMASFMEQIRGGRA-KFDLNRIVVTAGATAANELLTFILAD-------P-GDALLVPTPYYPGFDRDLRWRTGI-- 167 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~-~~~~~~i~~t~G~~~ai~~~~~~l~~-------~-gd~Vl~~~p~y~~~~~~~~~~~G~-- 167 (442)
+.+..+|+.+.+...... .-..+.+++++++++|++.+++.... + ..+|+...-+|.+....+....|.
T Consensus 107 ~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~ 186 (472)
T PRK08742 107 EPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPL 186 (472)
T ss_pred HHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcc
Confidence 445567776665421000 00235899999999999998876521 2 357888888887765332211121
Q ss_pred ----------EEEEEecCCCC--CCcC--------CHHHHHHHHHHHHhcCCceeEEEEeC-CCCCCCcC-CCHHHHHHH
Q 046900 168 ----------KIVPIHCDSSN--NFQI--------TPQALEAAYKEAESKDMRVRGVLITN-PSNPLGAT-IQRSVLEEL 225 (442)
Q Consensus 168 ----------~v~~v~~~~~~--~~~~--------d~~~l~~~l~~~~~~~~~~~~v~l~~-P~NPtG~~-~~~~~l~~l 225 (442)
.+..+|..... .+.. +++.+++.+.+ ...++.+|++.. ..+-.|.+ .+.+-++++
T Consensus 187 ~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~iAAvI~EPviqg~gG~~~~p~~fl~~l 263 (472)
T PRK08742 187 YRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQ---SPGEICALILEPRLQCAGGMRMHHPAYLRRA 263 (472)
T ss_pred cccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEccccccCCCcccCCHHHHHHH
Confidence 11222221100 0111 24556666642 223565555543 25666764 566779999
Q ss_pred HHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc-eeEEEeecCHHHHHHHHH-
Q 046900 226 LDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF-RVGTIYSYNDKVVTTARR- 303 (442)
Q Consensus 226 ~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~-RiG~i~~~~~~~~~~~~~- 303 (442)
.++|++||+++|.||+...|...|..+. ...+.- .+.+ -+++|.+| .|+ .+|.+++ ++++.+.+..
T Consensus 264 r~lc~~~gillI~DEV~TGfGRtG~~~a-~e~~gv------~PDi---v~~gKgl~-gG~~Plaav~~-~~ei~~~~~~~ 331 (472)
T PRK08742 264 RELCDAHGAFLIADEIATGFGRTGTLFA-CEQAGV------MPDL---LCLSKGLT-GGFLPLSAVLA-TQQLYDAFLDD 331 (472)
T ss_pred HHHHHHcCCEEEEechhhCCCCCccchH-HHhcCC------CCCE---EEEccccc-CCCCCcceeec-cHHHHHHhhcc
Confidence 9999999999999999988755554221 111111 1222 35699998 884 8999998 5666665532
Q ss_pred -------ccccCCCcHHHHHHHHHHhcC---chhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCc
Q 046900 304 -------MSSFTLISSQTQYLLASMLSN---KKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPL 373 (442)
Q Consensus 304 -------~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~ 373 (442)
....+..++++-+++.+.|+- .+. .+...++-+.+ ..+.+.+.++.+-.....-|+++-+++...
T Consensus 332 ~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l-~~~~~~~g~~l----~~~~~~~~~~~~i~dvRG~Gl~~giel~~~ 406 (472)
T PRK08742 332 SRERAFLHSHSYTGNPLACAAALATLDIFADDDV-IARNQPTAARM----TQLAAQIGEHPHVADVRQAGMVVAFELTRG 406 (472)
T ss_pred CccCccCcCCCCCccHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHH----HHHHHHHhcCCCeeeEeccceEEEEEeccC
Confidence 122344567776666666552 221 12222222222 223333444432222234566777777432
Q ss_pred cccc-C--h--hhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 374 LEEQ-T--R--EGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 374 ~~~~-~--~--~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.... . . .-...+.+.++++ ||++.+. .+.||+... .++++++++++++|.+++++.
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~-------g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 407 GNKRTPFPPAARVGLHAYRAALAR-GVVLRPL-------GDVLYWMPPYCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred ccccccCCchhHHHHHHHHHHHHC-CeEEEec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1111 0 0 1124567777776 9999862 146999886 558999999999999999864
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-12 Score=129.43 Aligned_cols=347 Identities=11% Similarity=0.045 Sum_probs=195.1
Q ss_pred CCCCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|..+...+..||+..+- ..+ ..+.+.+.+.++.... ..+....-..+.+..+|+.+.....
T Consensus 36 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~------------~~~~~~~~~~~~~~~lae~L~~~~p-- 101 (429)
T PRK06173 36 VMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKM------------SHIMFGGFTHEPAVELAQKLLEILP-- 101 (429)
T ss_pred eEEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhc------------CCccccccCCHHHHHHHHHHHhhCC--
Confidence 334455567788886542 222 3355555554443210 0000000012344455555554321
Q ss_pred CccCCCcEEEecChHHHHHHHHHhhcC-------C-CCeEEEcCCCCcChHHhHhhhcCc-------------EEEEEec
Q 046900 116 AKFDLNRIVVTAGATAANELLTFILAD-------P-GDALLVPTPYYPGFDRDLRWRTGI-------------KIVPIHC 174 (442)
Q Consensus 116 ~~~~~~~i~~t~G~~~ai~~~~~~l~~-------~-gd~Vl~~~p~y~~~~~~~~~~~G~-------------~v~~v~~ 174 (442)
-..+.+++++++++|++.+++.... + ..+|+...-+|.+.........|- .+..+|.
T Consensus 102 --~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~ 179 (429)
T PRK06173 102 --PSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQ 179 (429)
T ss_pred --CCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCC
Confidence 1246899999999999998776431 2 357888888887742111100110 0112221
Q ss_pred CCCCCCc-----CCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCCC
Q 046900 175 DSSNNFQ-----ITPQALEAAYKEAESKDMRVRGVLITNP-SNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSAF 247 (442)
Q Consensus 175 ~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~ 247 (442)
... .+. -+++.|++.+.+ .+.++.++++..- +.-.|.. .+.+-+++|.++|++||+++|+||++..+..
T Consensus 180 p~~-~~~~~~~~~~l~~l~~~i~~---~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~Gr 255 (429)
T PRK06173 180 PSI-KFGEEWNDEAIEPLQDLLEQ---KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGR 255 (429)
T ss_pred CCc-ccchhHHHHHHHHHHHHHHh---CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCc
Confidence 100 010 135556666653 2345666666542 5666766 5777799999999999999999999976433
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH-------ccccCCCcHHHHHHHH
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR-------MSSFTLISSQTQYLLA 319 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~-------~~~~~~~s~~~q~~~~ 319 (442)
.|..+ ......- .++ |+ +|+|+++ .| +.+|.+++ ++++.+.+.. ..+.+..++++.+++.
T Consensus 256 tG~~~-a~~~~gv-----~PD--iv--~~gK~l~-gG~~p~~a~~~-~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~ 323 (429)
T PRK06173 256 TGKLF-ALEHAGV-----VPD--IM--CIGKALT-GGYLTLSATIT-TEAIAQTICSGEAKCFMHGPTFMANPLACAIAA 323 (429)
T ss_pred CCcch-HHHhcCC-----CCC--EE--Eeehhhh-CCccccceEEe-cHHHHHHHhcCCCCccccCCCCCcCHHHHHHHH
Confidence 33321 1111110 122 32 4899997 78 47888888 5666666532 1122345666666666
Q ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec--CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEE
Q 046900 320 SMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK--GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLN 396 (442)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~ 396 (442)
+.|+- +++ ...++.++++-+++.+.|++. +..... -..|+++-+.+.... ....+.+.|+++ ||.
T Consensus 324 a~l~~---i~~--~~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~------~~~~i~~~l~e~-Gi~ 391 (429)
T PRK06173 324 ESIRL---LLE--SPWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPV------NMATLQPRFVEH-GIW 391 (429)
T ss_pred HHHHH---HHh--CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCcc------cHHHHHHHHHHC-CeE
Confidence 55542 111 123444555555666666543 333221 134567767775421 245677788776 999
Q ss_pred EeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 397 ISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 397 v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+.+. + ..+|+... .++++++++++++|.+++.+.
T Consensus 392 v~~~------g-~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~ 426 (429)
T PRK06173 392 VRPF------G-KLVYIMPPFIISPDELSQLTSGLLRVLKQE 426 (429)
T ss_pred EEec------C-CEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 9773 1 37999887 558999999999999998763
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-12 Score=138.02 Aligned_cols=346 Identities=14% Similarity=0.143 Sum_probs=204.2
Q ss_pred CceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCC---CcchHHHHHHHHHHHHHHhCCCCccCCCcEE
Q 046900 48 SGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQD---YHGLKSFRQAMASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 124 (442)
..+|.|+.....+.+......+.. + ++...+-|.+ .+|+.++...+.+++.+..| .+++-
T Consensus 499 ~~~i~lGsct~~~~p~~~~~~~~~-~----------~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG------~d~~s 561 (954)
T PRK05367 499 RSMIPLGSCTMKLNAAAEMIPITW-P----------EFANLHPFAPAEQAAGYRELIDQLEAWLAEITG------YDAVS 561 (954)
T ss_pred cceeeCCcCCCcCCHHHHHHHHhC-c----------cccccCCCChHHHHHHHHHHHHHHHHHHHHHHC------CCCEE
Confidence 456778876666554333332222 1 1222344544 25788999999999998877 23455
Q ss_pred Eec-ChHHHHHH---HHHhh-cCCCC----eEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHH
Q 046900 125 VTA-GATAANEL---LTFIL-ADPGD----ALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAE 195 (442)
Q Consensus 125 ~t~-G~~~ai~~---~~~~l-~~~gd----~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~ 195 (442)
+.. |++++... +++.+ .++|+ +|+++.-.|......+.. .|++++.++++.++ .+|+++|++.+.+.
T Consensus 562 l~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~-~G~~vv~v~~d~~G--~iD~~~L~~~i~~~- 637 (954)
T PRK05367 562 LQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVM-AGMKVVVVACDENG--NIDLDDLRAKAEEH- 637 (954)
T ss_pred ECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHH-CCCEEEEECCCCCC--CcCHHHHHHHHhcc-
Confidence 555 45554433 23332 34565 699999999888777874 89999999987644 68999999998652
Q ss_pred hcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEec
Q 046900 196 SKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275 (442)
Q Consensus 196 ~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S 275 (442)
+.++.+|++++|++-.+...+ +++|+++|+++|+++++|.++...... +.+...+ +--++..|
T Consensus 638 --~~~la~V~it~pst~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~al~~---l~~pg~~---------GADi~~~s 700 (954)
T PRK05367 638 --ADNLAAIMITYPSTHGVFEET---IREICEIVHEHGGQVYLDGANMNAQVG---LARPGDI---------GADVSHLN 700 (954)
T ss_pred --CCCeEEEEEEcCCCCeeecCC---HHHHHHHHHHcCCEEEEECcChhhccC---CCChhhc---------CCCEEEec
Confidence 225778888998876443445 889999999999999999999632221 1122222 22367789
Q ss_pred CcccCC----CCCceeEEEeecCHHHHHHHHHcc--------ccCCCc--HHHHHHH----HHHhcCchhHHHHHHHHHH
Q 046900 276 LSKDLG----LPGFRVGTIYSYNDKVVTTARRMS--------SFTLIS--SQTQYLL----ASMLSNKKFTENYIKTNRE 337 (442)
Q Consensus 276 ~SK~~g----~~G~RiG~i~~~~~~~~~~~~~~~--------~~~~~s--~~~q~~~----~~~l~~~~~~~~~~~~~~~ 337 (442)
++|+|+ ..|-.+|++.+. +.+...+.... ..+.++ ...|..+ ..++...+ .+.+++..+
T Consensus 701 ~HK~f~~P~G~GGPg~G~l~vr-~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G--~~Glr~~a~ 777 (954)
T PRK05367 701 LHKTFCIPHGGGGPGVGPIGVK-AHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMG--AEGLRQATE 777 (954)
T ss_pred CcccCCCCcCCCCCceEEEeec-ccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHC--HHHHHHHHH
Confidence 999974 234447888873 33332221100 011122 2222211 11121111 233455555
Q ss_pred HHHHHHHHHHHHHHhC-CCeeecCCceEE--EEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEE
Q 046900 338 RLQKRYQMIIEGLRSA-GIECLKGNAGLF--CWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVC 414 (442)
Q Consensus 338 ~~~~~~~~l~~~L~~~-g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls 414 (442)
..-.+.+++.+.|.+. .+.+..+.+..+ +.++++......+ ....++.++|.+. |+.... ..|. ..+.+||+
T Consensus 778 ~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g-~~~~di~krL~d~-G~~~~t-~~~p--v~~~l~i~ 852 (954)
T PRK05367 778 VAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKESTG-ITVDDIAKRLIDY-GFHAPT-MSFP--VAGTLMVE 852 (954)
T ss_pred HHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccccCC-CCHHHHHHHHHHC-CCeEee-cCCc--cCCEEEEE
Confidence 5556778888888663 333332221111 2223322111101 1357888998555 998654 3343 36778888
Q ss_pred ee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 415 FA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 415 ~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
+. .-++++++++++.|+++..+...
T Consensus 853 ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 853 PTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred eeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 76 22899999999999988776543
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=140.00 Aligned_cols=182 Identities=23% Similarity=0.325 Sum_probs=123.1
Q ss_pred CCcc-hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEE
Q 046900 93 DYHG-LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVP 171 (442)
Q Consensus 93 ~~~g-~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~ 171 (442)
.+.| ..+..+..|+.++ .....+++||+|.++..++.+++++||.|+++..+|.+...++.+ .|+++++
T Consensus 63 ~p~G~I~eAe~~aA~~fG---------Ad~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil-~ga~Pvy 132 (417)
T PF01276_consen 63 DPEGIIKEAEELAARAFG---------ADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALIL-SGAIPVY 132 (417)
T ss_dssp TTBTHHHHHHHHHHHHHT---------ESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHH-HTEEEEE
T ss_pred CCccHHHHHHHHHHHhcC---------CCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHH-cCCeEEE
Confidence 4445 4566666666665 244689999999999999999999999999999999999998885 8999999
Q ss_pred EecCCCCCC----cCCH-----HHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccC
Q 046900 172 IHCDSSNNF----QITP-----QALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIY 242 (442)
Q Consensus 172 v~~~~~~~~----~~d~-----~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y 242 (442)
++.. .+.+ .+++ +.+++++++..... .++++++++|+. -|.+++ +++|+++|.++++.|++||+|
T Consensus 133 i~p~-~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k-~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAh 206 (417)
T PF01276_consen 133 IPPE-DNEYGIIGGISPDEFNEEDIEEALKEHPDAK-APRLVVLTSPTY-YGVCYD---IKEIAEICHKHGIPLLVDEAH 206 (417)
T ss_dssp EEEE-E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCH-CESEEEEESS-T-TSEEE----HHHHHHHHCCTECEEEEE-TT
T ss_pred ecCC-ccccCCccCCChhhhhHHHHHHHHHhCcccc-CceEEEEeCCCC-CeEEEC---HHHHHHHhcccCCEEEEEccc
Confidence 9765 3333 2455 89999998753211 145599999987 688888 888999999999999999998
Q ss_pred CcC-CCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce-eEEEeecCH
Q 046900 243 SGS-AFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR-VGTIYSYND 295 (442)
Q Consensus 243 ~~~-~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R-iG~i~~~~~ 295 (442)
+.. .|. +-+.+...+..+ ......++++.|.+|.+ +++. .+++.....
T Consensus 207 Gah~~F~-~lp~~a~~~gad--~~~~~~~~vvqS~HKtL--~altQts~lh~~~~ 256 (417)
T PF01276_consen 207 GAHFGFH-PLPRSALALGAD--RPNDPGIIVVQSTHKTL--PALTQTSMLHVKGD 256 (417)
T ss_dssp -TTGGCS-GGGTTCSSTTSS---CTSBEEEEEEEHHHHS--SS-TT-EEEEEETC
T ss_pred cccccCC-CCccchhhccCc--cccccceeeeechhhcc--cccccceEEEecCC
Confidence 852 232 111111111111 01235678899999998 4443 456665433
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-12 Score=130.75 Aligned_cols=356 Identities=14% Similarity=0.122 Sum_probs=194.6
Q ss_pred CCCCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|..+...+.+||+..+. ..+ .++.+.+.+.+..... ..+... -..+.+..+|+.+.+...
T Consensus 45 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~------------~~~~~~-~~~~~~~~lae~L~~~~p-- 109 (451)
T PRK06062 45 SYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARL------------CTVAPA-HANDARSEAARLIAERAP-- 109 (451)
T ss_pred eEEEECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhc------------CCcCCc-cCCHHHHHHHHHHHHhCC--
Confidence 334455667888986543 323 2344444444433210 111111 123455566666665321
Q ss_pred CccCCCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCc-----------EEEEEecCCC--CCC
Q 046900 116 AKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGI-----------KIVPIHCDSS--NNF 180 (442)
Q Consensus 116 ~~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~-----------~v~~v~~~~~--~~~ 180 (442)
-..+.|++++++++|++.+++... ....+|+...-+|.+....+....|. .+..++.... ..|
T Consensus 110 --~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 187 (451)
T PRK06062 110 --GDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEF 187 (451)
T ss_pred --CCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCcccccc
Confidence 123689999999999999887642 23357888888887765332211221 1122221110 011
Q ss_pred c--CC-------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 181 Q--IT-------PQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 181 ~--~d-------~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
. -| ++.+++.++.. ...++.+|++..-....|.+. +.+-+++|.++|++||+++|.||++..|...|.
T Consensus 188 ~~~~~~~~~~~~~~~le~~l~~~--~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~ 265 (451)
T PRK06062 188 HATTEEEECERALAHLERVIELE--GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGK 265 (451)
T ss_pred CCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcH
Confidence 0 12 56677776531 113455555543355567765 566699999999999999999999987533332
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc-eeEEEeecCHHHHHHHHHc----cccCCCcHHHHHHHHHHhcCc
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF-RVGTIYSYNDKVVTTARRM----SSFTLISSQTQYLLASMLSNK 325 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~-RiG~i~~~~~~~~~~~~~~----~~~~~~s~~~q~~~~~~l~~~ 325 (442)
.+ ....+.- .++ +.+|+|.+| .|+ .+|.+++ .+.+.+.+... ...+..++++.+++.+.|+..
T Consensus 266 ~~-a~~~~gv-----~PD----i~t~gK~lg-gG~~Pigav~~-~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l 333 (451)
T PRK06062 266 WF-AIEHFGV-----VPD----LITFAKGVN-SGYVPLGGVAI-SEAIAATFADRPYPGGLTYSGHPLACAAAVATINAM 333 (451)
T ss_pred HH-HHHhcCC-----CCC----eeeechhhh-cCCcCcEEEEE-cHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 11 1111110 122 347899998 784 8999998 45677666421 112445677666666666421
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHh----CCCeeecCCceEEEEEecCCccccc----C----hhhHHHHHHHHHHc
Q 046900 326 KFTENYIKTNRERLQKRY-QMIIEGLRS----AGIECLKGNAGLFCWMNLSPLLEEQ----T----REGELALWDSMLHE 392 (442)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~-~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~~~~~~----~----~~~~~~l~~~l~~~ 392 (442)
. ++ ...+..++.- +++.+.|++ .+.......-|+++-+++....... . ......+...++++
T Consensus 334 ~--~~---~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 408 (451)
T PRK06062 334 E--EE---GIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKER 408 (451)
T ss_pred H--hc---CHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHC
Confidence 1 10 1222222222 233333333 2321122234556666653211000 0 01245677777776
Q ss_pred CcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 393 VKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 393 ~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
||++.+. .+.+|++.. .+++++++++++++.++++....
T Consensus 409 -Gvl~~~~-------~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~~ 448 (451)
T PRK06062 409 -GLLPFVN-------GNRIHVVPPCTVTEDEVREGLAILDAALAVADA 448 (451)
T ss_pred -CcEEeec-------CCEEEEECCccCCHHHHHHHHHHHHHHHHHhhh
Confidence 9998652 246899875 34999999999999999987643
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-12 Score=128.22 Aligned_cols=341 Identities=12% Similarity=0.069 Sum_probs=193.7
Q ss_pred CCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCC-cchHHHHHHHHHHHHHHhCCCCcc
Q 046900 44 STNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDY-HGLKSFRQAMASFMEQIRGGRAKF 118 (442)
Q Consensus 44 ~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~l~~~~~~~~~~ 118 (442)
+...+.+||+..+- +.+ .++.+.+.+.++.... .|... .-..+.+..+|+.+.+... .
T Consensus 39 D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~-------------~~~~~~~~~~~~~~~la~~L~~~~p----~ 101 (428)
T PRK07986 39 LADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAM-------------SHVMFGGITHPPAIELCRKLVAMTP----Q 101 (428)
T ss_pred eCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhc-------------CCccccccCCHHHHHHHHHHHhhCC----C
Confidence 44566788886542 333 3355555555443211 01000 0123455666776665321 1
Q ss_pred CCCcEEEecChHHHHHHHHHhhcC-------CCCeEEEcCCCCcChHHhHhhhcCc-------------EEEEEecCCCC
Q 046900 119 DLNRIVVTAGATAANELLTFILAD-------PGDALLVPTPYYPGFDRDLRWRTGI-------------KIVPIHCDSSN 178 (442)
Q Consensus 119 ~~~~i~~t~G~~~ai~~~~~~l~~-------~gd~Vl~~~p~y~~~~~~~~~~~G~-------------~v~~v~~~~~~ 178 (442)
..+.+++++++++|++.+++.... ...+|+...-+|.+....+....+- .++.+|.....
T Consensus 102 ~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 181 (428)
T PRK07986 102 PLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSR 181 (428)
T ss_pred CcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcc
Confidence 236899999999999998875431 2367888888887643221101121 11122211000
Q ss_pred ---CC-cCCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 179 ---NF-QITPQALEAAYKEAESKDMRVRGVLITNP-SNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 179 ---~~-~~d~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
.| .-|.+.+++.+++. +.++.+|++... +.-.|.. .+.+-+++|.++|++|++++|+||++..+...|..+
T Consensus 182 ~~~~~~~~d~~~l~~~l~~~---~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~f 258 (428)
T PRK07986 182 FDGEWDERDIAPFARLMAAH---RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLF 258 (428)
T ss_pred cchhhHHHHHHHHHHHHHhC---CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCee
Confidence 01 12456777777532 234555555432 4445654 466789999999999999999999997653344322
Q ss_pred cc-HHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHc-------cccCCCcHHHHHHHHHHhc
Q 046900 253 VS-IAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRM-------SSFTLISSQTQYLLASMLS 323 (442)
Q Consensus 253 ~s-~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~-------~~~~~~s~~~q~~~~~~l~ 323 (442)
.. ...+. ++ ++ +++|+++ .| +.+|.+++ .+.+.+.+... ...+..++++.+++.+.|+
T Consensus 259 a~~~~gv~-------PD--i~--t~gK~l~-gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~ 325 (428)
T PRK07986 259 ACEHAGIA-------PD--IL--CLGKALT-GGTMTLSATLT-TREVAETISNGEAGCFMHGPTFMGNPLACAVANASLS 325 (428)
T ss_pred eecccCCC-------CC--EE--Eechhhh-CCcccCcchhc-hHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHH
Confidence 11 11111 12 22 5899997 78 58888888 56677666431 1223456666666666555
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee--cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCC
Q 046900 324 NKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECL--KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPG 400 (442)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg 400 (442)
.. ++ ....+..+++-+++.+.|+++ ..... .-..|+++-+.+.... ....+...++++ ||.+.+.
T Consensus 326 ~i---~~--~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~------~~~~~~~~l~~~-Gl~~~~~ 393 (428)
T PRK07986 326 LL---ES--GDWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTRPV------NMAALQRFFVEQ-GVWIRPF 393 (428)
T ss_pred HH---Hh--CCHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCCcc------cHHHHHHHHHHC-CcEEEec
Confidence 21 11 012334444444555555443 11111 1234566667765421 245677787776 9999873
Q ss_pred CCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 401 SSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 401 ~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
...+|+... .++++++++++++|.+++.+
T Consensus 394 -------g~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 394 -------GKLIYLMPPYIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred -------CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 146999766 45999999999999999865
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-12 Score=130.38 Aligned_cols=318 Identities=14% Similarity=0.179 Sum_probs=190.6
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCC--------cc-CCCcEEEecChHHHHHHHHHhhcC-------------------
Q 046900 91 FQDYHGLKSFRQAMASFMEQIRGGRA--------KF-DLNRIVVTAGATAANELLTFILAD------------------- 142 (442)
Q Consensus 91 Y~~~~g~~~lr~~ia~~l~~~~~~~~--------~~-~~~~i~~t~G~~~ai~~~~~~l~~------------------- 142 (442)
|.......++.+.+.+|+.+..+... .. +...-++|+|+|+++..++.+-.+
T Consensus 121 ~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~ 200 (522)
T TIGR03799 121 IETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFA 200 (522)
T ss_pred eecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchh
Confidence 33445668999999999998753100 00 112367899999988876544211
Q ss_pred -------CCCeEEEcCCCCcChHHhHhhhcCc---EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCC
Q 046900 143 -------PGDALLVPTPYYPGFDRDLRWRTGI---KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP 212 (442)
Q Consensus 143 -------~gd~Vl~~~p~y~~~~~~~~~~~G~---~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NP 212 (442)
++..|++..-.|..+..++.. .|+ +++.+|.++ ++.+|++.|++.+++...++.++-+|+-+..++.
T Consensus 201 ~~~~~~~~~~~v~~S~~~H~S~~kaa~~-lglg~~~v~~vp~d~--~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~ 277 (522)
T TIGR03799 201 ALKHYGYDGLAILVSERGHYSLGKAADV-LGIGRDNLIAIKTDA--NNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTE 277 (522)
T ss_pred hhhhccCCceEEEECCCchHHHHHHHHH-cCCCcccEEEEEeCC--CCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcC
Confidence 234688888889999888885 787 789999876 4579999999999865444433333344456779
Q ss_pred CCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEee
Q 046900 213 LGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYS 292 (442)
Q Consensus 213 tG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~ 292 (442)
||.+-| +++|+++|+++|+++++|.+|+....-.. ....+... ...--.+..|.+|.++ ....+|.++.
T Consensus 278 tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~~---~~r~~l~g----le~aDSit~d~HK~l~-~P~g~G~llv 346 (522)
T TIGR03799 278 TGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLSN---TYRHLLKG----IERADSVTIDAHKQLY-VPMGAGMVLF 346 (522)
T ss_pred CCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhCH---HHHHHhcC----chhCCEEEEChhhcCC-cCcccEEEEE
Confidence 999988 78888999999999999999985332111 11111111 0011245679999764 4466899988
Q ss_pred cCHHHHHHHHHcccc-------------CCCcH----HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Q 046900 293 YNDKVVTTARRMSSF-------------TLISS----QTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-G 354 (442)
Q Consensus 293 ~~~~~~~~~~~~~~~-------------~~~s~----~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 354 (442)
.++...+.+.....+ ...+. +...++...+.. .-++++.++..+..+++.+.|++. +
T Consensus 347 r~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~-----~G~~~ii~~~~~la~~l~~~L~~~~~ 421 (522)
T TIGR03799 347 KDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGR-----KGYELLIDQSIEKAKYFADLIQQQPD 421 (522)
T ss_pred eCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 665554443321111 01111 122233333332 335667777788888999999876 8
Q ss_pred CeeecC-CceEEEEEec-CCccccc----C-------hh--h--HHHHHHHHHHcCcEEEeC-C----CCCCCCCCCEEE
Q 046900 355 IECLKG-NAGLFCWMNL-SPLLEEQ----T-------RE--G--ELALWDSMLHEVKLNISP-G----SSCHCSEPGWFR 412 (442)
Q Consensus 355 ~~~~~~-~~g~~~~~~~-~~~~~~~----~-------~~--~--~~~l~~~l~~~~gi~v~p-g----~~f~~~~~~~iR 412 (442)
+++..+ .-+..+ +++ |...... . .. + ...+.+++.+. |..... . ..+...+...+|
T Consensus 422 ~el~~~p~l~iv~-Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~-G~~~vs~t~l~~~~~~g~~~~~lR 499 (522)
T TIGR03799 422 FELVTEPELCLLT-YRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREA-GKSFVSRTRLTPAQYDHQPTVVFR 499 (522)
T ss_pred eEEecCCCccEEE-EEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEecccccCCCCcEEEE
Confidence 887664 444333 343 3221100 0 00 0 13555566555 544332 2 112112234699
Q ss_pred EEeecC--CHHHHHHHHHH
Q 046900 413 VCFANM--SEQTLEVALKR 429 (442)
Q Consensus 413 ls~~~~--~~e~i~~~l~~ 429 (442)
+++.+. ++++++..++.
T Consensus 500 ~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 500 VVLANPLTTHEILQDILDE 518 (522)
T ss_pred EEecCCCCCHHHHHHHHHH
Confidence 999743 67777776553
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-12 Score=129.35 Aligned_cols=355 Identities=13% Similarity=0.087 Sum_probs=194.7
Q ss_pred CCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCcc
Q 046900 43 ESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKF 118 (442)
Q Consensus 43 ~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~ 118 (442)
-+.....+||+..+. ..+ .++.+.+.+.+...... -.... .....+.+..+|+.+.+... -
T Consensus 43 ~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~---------~~~~~--~~~~~~~~~~lae~L~~~~p----~ 107 (460)
T PRK06105 43 YDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLP---------FYHTF--SHKSHGPVIDLAEKLVAMAP----V 107 (460)
T ss_pred EECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCC---------Ceecc--cccCCHHHHHHHHHHHHhCC----C
Confidence 345567789987653 333 33555555444432100 00011 01123445556666665421 1
Q ss_pred CCCcEEEecChHHHHHHHHHhhc------C-C-CCeEEEcCCCCcChHHhHhhhcCc------------EEEEEecCCCC
Q 046900 119 DLNRIVVTAGATAANELLTFILA------D-P-GDALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCDSSN 178 (442)
Q Consensus 119 ~~~~i~~t~G~~~ai~~~~~~l~------~-~-gd~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~~~~ 178 (442)
.-+.+++++++++|++.+++... . + ...|+...-+|.+.........|. .+..+|.....
T Consensus 108 ~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~ 187 (460)
T PRK06105 108 PMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYY 187 (460)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCccc
Confidence 23689999999999999988742 1 2 357887777776654322101111 11112211100
Q ss_pred CCc-----------CCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 179 NFQ-----------ITPQALEAAYKEAESKDMRVRGVLITNPSNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 179 ~~~-----------~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
.+. ...+++++.+... ...++.+|++..-....|.. .+.+-+++|.++|++||+++|.||++..+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~G 265 (460)
T PRK06105 188 RFGLPGESEEAFATRLANELEALILAE--GPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFG 265 (460)
T ss_pred ccccCCCChHHHHHHHHHHHHHHHHHc--CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCC
Confidence 000 0135566666421 11345555554335566765 467779999999999999999999997764
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHc---------cccCCCcHHHHH
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRM---------SSFTLISSQTQY 316 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~---------~~~~~~s~~~q~ 316 (442)
..|..+ ....+.- .+| +.+++|.++ .| +.+|.+++ ++.+.+.+... ...+..++++..
T Consensus 266 RtG~~f-~~~~~~v-----~PD----i~~~gK~lg-gG~~P~~av~~-~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~a 333 (460)
T PRK06105 266 RTGNMF-GCETFGI-----KPD----ILVMSKQLS-SSYQPLSAVLM-NEKVYDPIADESGKIGTFGHGFTASGHPVAAA 333 (460)
T ss_pred cCchhh-hHHhcCC-----CCC----eeeeecccc-cCcccceEEEE-cHHHHHHHhcccccCcccccCCCCCCCHHHHH
Confidence 444322 1111111 122 347899998 66 58999999 56666665431 123455677766
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh---CCCeeecCCceEEEEEecCCcccc-cC----hhhHHHHHHH
Q 046900 317 LLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS---AGIECLKGNAGLFCWMNLSPLLEE-QT----REGELALWDS 388 (442)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~g~~~~~~~~g~~~~~~~~~~~~~-~~----~~~~~~l~~~ 388 (442)
++.+.|+-. ++ ....+..++.-++|.+.|++ +.+-.....-|+++-+++...... .. ...+..+...
T Consensus 334 aa~a~L~~i---~~--~~l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~ 408 (460)
T PRK06105 334 VALENLAII---EE--RDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAA 408 (460)
T ss_pred HHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHH
Confidence 665555421 11 11223333334444444433 332222234456666666321110 00 0113567777
Q ss_pred HHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 389 MLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 389 l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
++++ ||++.+. ...+|++.. .+++++++++++++.+++++...
T Consensus 409 ~~~~-Gvl~~~~-------g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 452 (460)
T PRK06105 409 AHEH-GVISRAM-------GDTLAFCPPLIITAAQVDEMVDRFGRALDDVAA 452 (460)
T ss_pred HHHC-CeEEEec-------CCEEEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 7766 9999873 136999876 35899999999999999987643
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-12 Score=126.86 Aligned_cols=312 Identities=12% Similarity=0.092 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC-------CC-CeEEEcCCCCcChHHhHhhhcCc--
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD-------PG-DALLVPTPYYPGFDRDLRWRTGI-- 167 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~-------~g-d~Vl~~~p~y~~~~~~~~~~~G~-- 167 (442)
.+.+..+|+.+.+..+ +-..+.+++++++++|++.+++.... +| .+|+...-+|.+....+....|-
T Consensus 85 ~~~~~~lae~L~~~~~---~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~ 161 (449)
T PRK07481 85 HPRAIELSYELIDMFA---PEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTV 161 (449)
T ss_pred CHHHHHHHHHHHHhcC---CCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcc
Confidence 3555566666665421 01235899999999999998876431 23 57888888887754322111111
Q ss_pred ----------EEEEEecCCC--CCCc-CCHHHHHHHHH----HHH--hcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHH
Q 046900 168 ----------KIVPIHCDSS--NNFQ-ITPQALEAAYK----EAE--SKDMRVRGVLITNPSNPLGATI-QRSVLEELLD 227 (442)
Q Consensus 168 ----------~v~~v~~~~~--~~~~-~d~~~l~~~l~----~~~--~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~ 227 (442)
.+..++.+.. ..|. -|++.+++.+. +.- ....++.+|++.....-.|.+. +.+-+++|.+
T Consensus 162 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~ 241 (449)
T PRK07481 162 FRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVRE 241 (449)
T ss_pred cccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHH
Confidence 1222221110 0111 14444433322 110 1123566666554455567654 6666999999
Q ss_pred HHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH---
Q 046900 228 FATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR--- 303 (442)
Q Consensus 228 ~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~--- 303 (442)
+|++||+++|.||+...+...+..+. ...+. ..+. +-+++|.++ .| +.+|.+++ .+.+.+.+..
T Consensus 242 lc~~~g~llI~DEV~tGfGRtG~~~a-~~~~g------v~PD---iv~~gKgl~-gG~~Pi~av~~-~~~i~~~~~~~~~ 309 (449)
T PRK07481 242 VCDRHGILLIADEVVTGFGRTGSWFG-SRGWG------VKPD---IMCLAKGIT-SGYVPLGATMV-NARIADAFEANAD 309 (449)
T ss_pred HHHHcCCEEEEeehhhCcCcCchhhH-hhhcC------CCCC---EEEEeeccc-CCCcCceEEEE-cHHHHHHHhccCc
Confidence 99999999999999987644443211 11111 1122 235799997 78 59999999 5666666542
Q ss_pred ------ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh----CCCeeecCCceEEEEEecCCc
Q 046900 304 ------MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS----AGIECLKGNAGLFCWMNLSPL 373 (442)
Q Consensus 304 ------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~~ 373 (442)
....+..++++.+++.+.|+... + ....+..++.-+++.+.|++ +++......-|+++.+++...
T Consensus 310 ~~~~~~h~~T~~gnpl~~aaa~a~L~~l~---~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~ 384 (449)
T PRK07481 310 FGGAIMHGYTYSGHPVACAAALATLDIVV---R--EDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVAD 384 (449)
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHH---h--hhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEeccc
Confidence 11224456777666666665211 1 11223333333444444433 233222334456777776421
Q ss_pred cccc-----ChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 374 LEEQ-----TREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 374 ~~~~-----~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.... .......+...++++ ||++.+.. ..+||+.. .++++++++++++|.+++++.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~g-------~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 385 KATREPIDPSKGYANAVADVAREN-GVLVRPSG-------TKIILSPPLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred ccccCCCCchhHHHHHHHHHHHhC-CeEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 1000 011245677777776 99998731 24888866 358999999999999998764
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-12 Score=128.09 Aligned_cols=356 Identities=10% Similarity=0.059 Sum_probs=194.8
Q ss_pred CCCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCC
Q 046900 41 YEESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRA 116 (442)
Q Consensus 41 ~~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 116 (442)
|..+...+.+||+..+. ..+ .++.+.+.+.+...... ....+.. ...+.+..+|+.+.....
T Consensus 44 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~---------~~~~~~~--~~~~~~~~lae~L~~~~p--- 109 (466)
T PRK07036 44 YVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLP---------YYTPFGD--MTNAPAAELAAKLAELAP--- 109 (466)
T ss_pred EEEECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCc---------ccccccc--cCCHHHHHHHHHHHHhCC---
Confidence 33445567788886553 223 23555555554432100 0011110 123555667776665321
Q ss_pred ccCCCcEEEecChHHHHHHHHHhhc------C-C-CCeEEEcCCCCcChHHhHhhhcCc------------EEEEEecCC
Q 046900 117 KFDLNRIVVTAGATAANELLTFILA------D-P-GDALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCDS 176 (442)
Q Consensus 117 ~~~~~~i~~t~G~~~ai~~~~~~l~------~-~-gd~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~~ 176 (442)
-.-+.+++++++++|++.+++... . + ..+|+...-+|.+....+....|- .+..++...
T Consensus 110 -~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (466)
T PRK07036 110 -GDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPN 188 (466)
T ss_pred -CCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCc
Confidence 123589999999999999887642 1 1 257888888887754322111111 122222211
Q ss_pred C--CCCcCC--------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcC
Q 046900 177 S--NNFQIT--------PQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGS 245 (442)
Q Consensus 177 ~--~~~~~d--------~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~ 245 (442)
. ..+..+ .+.+++.+.. ....++.+|++.......|... +.+-+++|.++|++||+++|.||+...+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGf 266 (466)
T PRK07036 189 PYRRPAGMSEAAFCDFLVDEFEDKILS--LGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGF 266 (466)
T ss_pred ccccccCCChHHHHHHHHHHHHHHHHH--cCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCC
Confidence 0 011111 2334444432 1123565666654456667755 5666999999999999999999999876
Q ss_pred CCCCCCcccHH-HHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHc---------cccCCCcHHH
Q 046900 246 AFSSSEFVSIA-EILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRM---------SSFTLISSQT 314 (442)
Q Consensus 246 ~~~~~~~~s~~-~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~---------~~~~~~s~~~ 314 (442)
...|..+ ... .+.- .++ +-+++|.++ .| +.+|.+++ .+.+.+.+... ...+..++++
T Consensus 267 GRtG~~~-~~~~~~gv-----~PD----ivt~gK~l~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~ 334 (466)
T PRK07036 267 GRLGHFF-ASEAVFGI-----QPD----IITFAKGLT-SGYQPLGAVII-SERLLDVISGPNAKGNVFTHGFTYSGHPVA 334 (466)
T ss_pred CcCchhh-hhhhhcCC-----CCC----EEEEccccc-cCccccEEEEE-cHHHHHHHhcccCcCcccccCCCCCCCHHH
Confidence 4444211 111 1111 122 336799998 78 48999998 56666665421 1123456777
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHH---hCCCeeecCCceEEEEEecCCccccc-----ChhhHHHHH
Q 046900 315 QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLR---SAGIECLKGNAGLFCWMNLSPLLEEQ-----TREGELALW 386 (442)
Q Consensus 315 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~---~~g~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~l~ 386 (442)
.+++.+.|+.. ++ ....+..++.-++|.+.|+ ++++......-|+++.+++....... .......+.
T Consensus 335 ~aaa~a~Le~i---~~--~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
T PRK07036 335 CAAALKNIEIM---ER--EGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRID 409 (466)
T ss_pred HHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHH
Confidence 66666665421 10 1122233333333334433 33332223345667777774321100 011245677
Q ss_pred HHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 387 DSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 387 ~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
..++++ ||++.+.. +.+|++.. .++++++++++++|.+++++..
T Consensus 410 ~~~~~~-Gvl~~~~~-------~~~~l~Ppl~it~~~id~~~~~l~~al~~~~ 454 (466)
T PRK07036 410 RHCQER-GLLVRPLE-------HLCVLSPPLIITRAQIDEIVAILRAAIEETA 454 (466)
T ss_pred HHHHHC-CcEEeecC-------CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 777776 99998631 35788865 4589999999999999988763
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.5e-12 Score=136.36 Aligned_cols=353 Identities=12% Similarity=0.137 Sum_probs=194.7
Q ss_pred CCCCCceeeeeccccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 44 STNPSGVIQMGLAENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 44 ~~~~~~~i~l~~~~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
+.....+||+..+...++ ++.+.+.+.+..... .....| ..+....+++.+.+... -..+
T Consensus 581 D~dG~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l---------~~~~~~-----~~~~~~elae~L~~~~p----~~~~ 642 (972)
T PRK06149 581 DMAGRSYLDMVNNVTVLGHGHPRLAAAAARQWSLL---------NTNSRF-----HYAAVAEFSERLAALAP----DGLD 642 (972)
T ss_pred eCCCCEEEECCCCccccCCCCHHHHHHHHHHHHhc---------cccccc-----cCHHHHHHHHHHHHhCC----CCcC
Confidence 345667888876543343 355555544432210 001112 12344455555554321 1236
Q ss_pred cEEEecChHHHHHHHHH---hhcCCCCeEEEcCCCCcChHHhH-hhhc----Cc--------EEEEEecCCC--CCCc-C
Q 046900 122 RIVVTAGATAANELLTF---ILADPGDALLVPTPYYPGFDRDL-RWRT----GI--------KIVPIHCDSS--NNFQ-I 182 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~---~l~~~gd~Vl~~~p~y~~~~~~~-~~~~----G~--------~v~~v~~~~~--~~~~-~ 182 (442)
.+++++++++|+..+++ .... ...|+...-+|.+....+ .... +. .+..++.... ..|. .
T Consensus 643 ~v~f~~SGsEA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~ 721 (972)
T PRK06149 643 TVFLVNSGSEANDLAIRLAWAASG-RRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGA 721 (972)
T ss_pred EEEEeCCchHHHHHHHHHHHHhcC-CCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCc
Confidence 89999999999999887 3433 356777777776543221 1000 00 1122222111 1121 1
Q ss_pred C-----HHHHHHHHHHHHhcCCceeEEEEeCCCCCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHH
Q 046900 183 T-----PQALEAAYKEAESKDMRVRGVLITNPSNPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIA 256 (442)
Q Consensus 183 d-----~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~ 256 (442)
+ .+.+++.++.....+.++.+|++..-....|. ..+.+-+++|.++|++||+++|.||++..|...|..+..+.
T Consensus 722 ~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e 801 (972)
T PRK06149 722 DSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFE 801 (972)
T ss_pred ccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhh
Confidence 1 24555555443323345555555433444454 55667799999999999999999999976544443222222
Q ss_pred HHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH---ccccCCCcHHHHHHHHHHhcCchhHHHHHH
Q 046900 257 EILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR---MSSFTLISSQTQYLLASMLSNKKFTENYIK 333 (442)
Q Consensus 257 ~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~---~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~ 333 (442)
...- ...+ -+++|.+| .|+.+|.+++ .+.+.+.+.. ..+.++.++++.+++.+.|+-.+ ++
T Consensus 802 ~~gv------~PDi---vt~gK~lg-~G~Pl~av~~-~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~--~e--- 865 (972)
T PRK06149 802 QQGV------VPDI---ITMAKGMG-NGHPLGAVIT-RREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLR--EE--- 865 (972)
T ss_pred hcCC------CCCE---EEeccccc-CCeeeEEEEE-cHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHH--hc---
Confidence 1111 1222 37899998 8999999999 5677766643 11223457777777666665211 11
Q ss_pred HHHHHHHHHHHHHHHHHHh----CCCeeecCCceEEEEEecCCcccc--cChhhHHHHHHHHHHcCcEEEeCCCCCCCCC
Q 046900 334 TNRERLQKRYQMIIEGLRS----AGIECLKGNAGLFCWMNLSPLLEE--QTREGELALWDSMLHEVKLNISPGSSCHCSE 407 (442)
Q Consensus 334 ~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~ 407 (442)
...+..++.-+++.+.|++ +++......-|+++-+++...... ........++..++++ ||++.+.. ..
T Consensus 866 ~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~-Gvl~~~~g----~~ 940 (972)
T PRK06149 866 KLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLEL-GVIMQPTG----DH 940 (972)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhC-CeEEeecC----CC
Confidence 1222233333333344433 333222334566777776321110 1112356778888777 99998742 12
Q ss_pred CCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 408 PGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 408 ~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
...+|+... .++++++++++++|.+++.+
T Consensus 941 ~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 941 LNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred CCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 357898776 45999999999999999864
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.5e-13 Score=137.82 Aligned_cols=181 Identities=18% Similarity=0.174 Sum_probs=125.8
Q ss_pred Ccc-hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEE
Q 046900 94 YHG-LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPI 172 (442)
Q Consensus 94 ~~g-~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v 172 (442)
+.| ..+..+..|+.++ .....+++||+|.++.+++.+++++||.|+++..||-+...++.+ .|++++++
T Consensus 203 p~G~I~eAq~~aA~~fg---------A~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L-~ga~Pvyl 272 (755)
T PRK15029 203 HTGAFGESEKYAARVFG---------ADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLIL-TGAKPVYM 272 (755)
T ss_pred CCcHHHHHHHHHHHHhC---------CCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHH-cCCeEEEe
Confidence 344 3455555555554 245699999999999999999999999999999999999998885 99999998
Q ss_pred ecCCCCCCc----CC-----HHHHHHHHHHHHh----cCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEe
Q 046900 173 HCDSSNNFQ----IT-----PQALEAAYKEAES----KDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSD 239 (442)
Q Consensus 173 ~~~~~~~~~----~d-----~~~l~~~l~~~~~----~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~D 239 (442)
+... +.|+ ++ ++.++++++++.. .+.+++++++++|+. -|.+++ +++|++.|.++++.|++|
T Consensus 273 ~P~~-~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvD 347 (755)
T PRK15029 273 VPSR-NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKTSDRLHFD 347 (755)
T ss_pred cccc-cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhcCCeEEEE
Confidence 6443 2222 33 8899999976531 123556999999987 688888 788899999999999999
Q ss_pred ccCCc-CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee-EEEee
Q 046900 240 EIYSG-SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV-GTIYS 292 (442)
Q Consensus 240 e~y~~-~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri-G~i~~ 292 (442)
|+|+. +.|.. .++....+..+........++++.|.+|.+ |++.- +++..
T Consensus 348 EAhGah~~F~~-~~p~~sa~~~~~~~~~Gad~~vvqStHKtL--~alTQaS~LHv 399 (755)
T PRK15029 348 EAWYGYARFNP-IYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHV 399 (755)
T ss_pred CccccccccCc-cccccccccccccccCCCceEEEEchhhcc--cchhhhhhhee
Confidence 99975 33332 222111110000000012348889999998 44444 45555
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-12 Score=128.75 Aligned_cols=280 Identities=13% Similarity=0.110 Sum_probs=166.8
Q ss_pred CcEEEecChHHHHHHHHHhhcC-------C-CCeEEEcCCCCcChHHhHhhhcCcE-------------EEEEecCCCCC
Q 046900 121 NRIVVTAGATAANELLTFILAD-------P-GDALLVPTPYYPGFDRDLRWRTGIK-------------IVPIHCDSSNN 179 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~l~~-------~-gd~Vl~~~p~y~~~~~~~~~~~G~~-------------v~~v~~~~~~~ 179 (442)
+.+++++++++++..+++.... + ..+|+...-+|.+....+....|-. +..++... ..
T Consensus 106 ~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~-~~ 184 (427)
T TIGR00508 106 DCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQ-NR 184 (427)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCC-cc
Confidence 6899999999999988775431 2 2578888888877543322112211 11111110 01
Q ss_pred Cc-----CCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 180 FQ-----ITPQALEAAYKEAESKDMRVRGVLITNP-SNPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 180 ~~-----~d~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+. -|.+++++.+.++ +.++.+|++..- ++-.|. ..+.+.+++|.++|++|++++|+||++..+...+..+
T Consensus 185 ~~~~~~~~~~~~l~~~l~~~---~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~ 261 (427)
T TIGR00508 185 FDEEWNEEAITPLAKLMELH---SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLF 261 (427)
T ss_pred ccchhHHHHHHHHHHHHHhc---CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccc
Confidence 11 1356677777542 234545444432 555565 4478889999999999999999999997654444322
Q ss_pred cc-HHHHHhhhcCCCCCcEEEEecCcccCCCCCc-eeEEEeecCHHHHHHHHHc-------cccCCCcHHHHHHHHHHhc
Q 046900 253 VS-IAEILEARQYKDSERVHIVYSLSKDLGLPGF-RVGTIYSYNDKVVTTARRM-------SSFTLISSQTQYLLASMLS 323 (442)
Q Consensus 253 ~s-~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~-RiG~i~~~~~~~~~~~~~~-------~~~~~~s~~~q~~~~~~l~ 323 (442)
.. ...+. ++ |+ +++|+++ .|+ .++.+++ ++.+.+.++.. ...+..++++..++.+.|+
T Consensus 262 ~~~~~~v~-------pD--i~--~~gK~l~-gG~~p~~a~~~-~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~ 328 (427)
T TIGR00508 262 ACEHAGVV-------PD--IL--CVGKALT-GGYMTLSATVT-TDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLA 328 (427)
T ss_pred hhhhcCCC-------CC--EE--Eechhhh-cCcccceEEEE-cHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHH
Confidence 11 11111 22 22 4799996 785 6787777 56777766531 1223456777666666665
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCe-eec--CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCC
Q 046900 324 NKKFTENYIKTNRERLQKRYQMIIEGLRSAGIE-CLK--GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPG 400 (442)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~--~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg 400 (442)
-. ++ ....+.++++-++|.+.|++++.. ... ..-|.++-+.+.... ....+...|+++ ||.+.+.
T Consensus 329 ~l---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~------~~~~~~~~l~~~-Gv~~~~~ 396 (427)
T TIGR00508 329 IL---LE--GEWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPV------NVEELQKKFVEQ-GVWIRPF 396 (427)
T ss_pred HH---Hh--CCHHHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCcc------CHHHHHHHHHHC-CeEEEec
Confidence 21 11 122344555556666666554211 111 122556666664311 246778888777 9999763
Q ss_pred CCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 401 SSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 401 ~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
. ..+|++.. .+++++++++++++.+++++
T Consensus 397 ~-------~~l~~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 397 G-------KLIYVMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred C-------CEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 1 35899876 34899999999999998864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-12 Score=120.51 Aligned_cols=155 Identities=22% Similarity=0.300 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----HhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD----LRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~~G~~v~~v 172 (442)
...|.+.||..-+- ---+.+++++.|+..++..++++||.|+-..--|.+.... ++ ..|.++..+
T Consensus 64 ~~vlE~RiAaLEGG----------~aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~-~~Gi~v~fv 132 (426)
T COG2873 64 TDVLEERIAALEGG----------VAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLK-RLGIEVRFV 132 (426)
T ss_pred HHHHHHHHHHhhcc----------hhhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHH-hcCcEEEEe
Confidence 46788888887651 1245677789999999999999999999988888775444 45 489999998
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
.. .|++.+++++++ ++|+|++..-.||.+.+.+ +++|+++|+++++++|+|...+.-. .
T Consensus 133 d~-------~d~~~~~~aI~~------nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpy-----l 191 (426)
T COG2873 133 DP-------DDPENFEAAIDE------NTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPY-----L 191 (426)
T ss_pred CC-------CCHHHHHHHhCc------ccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCcce-----e
Confidence 63 368999999987 9999999999999999988 8899999999999999999987421 1
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEee
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYS 292 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~ 292 (442)
....+. +--|+++|+||..|-.|--+|-++.
T Consensus 192 ~rP~~h---------GADIVvHS~TK~igGhGt~iGG~iV 222 (426)
T COG2873 192 CRPIEH---------GADIVVHSATKYIGGHGTAIGGVIV 222 (426)
T ss_pred cchhhc---------CCCEEEEeecccccCCccccceEEE
Confidence 112222 3348899999999888888887776
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-12 Score=127.05 Aligned_cols=342 Identities=12% Similarity=0.100 Sum_probs=188.3
Q ss_pred CCCCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|..+.....+||+..+. ..+ ..+.+.+.+.+...... ...+.. -..+....+|+.+.+...
T Consensus 32 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~----------~~~~~~--~~~~~~~~lae~L~~~~p-- 97 (422)
T PRK05630 32 VFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMS----------HVMFGG--LTHEPAIKLTRKLLNLTD-- 97 (422)
T ss_pred eEEEECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCC----------CcccCC--cCCHHHHHHHHHHHhhCC--
Confidence 344455667888986542 223 33555555554432100 000100 012344556666654321
Q ss_pred CccCCCcEEEecChHHHHHHHHHhhcC-------CC-CeEEEcCCCCcChHHhHhhhcCc-------------EEEEEec
Q 046900 116 AKFDLNRIVVTAGATAANELLTFILAD-------PG-DALLVPTPYYPGFDRDLRWRTGI-------------KIVPIHC 174 (442)
Q Consensus 116 ~~~~~~~i~~t~G~~~ai~~~~~~l~~-------~g-d~Vl~~~p~y~~~~~~~~~~~G~-------------~v~~v~~ 174 (442)
-.-+.+++++++++|++.+++.... ++ .+|+...-+|.+....+....+- .+..+|.
T Consensus 98 --~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~ 175 (422)
T PRK05630 98 --NGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPA 175 (422)
T ss_pred --CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCC
Confidence 1236899999999999988875421 22 57888888887743322111110 1122222
Q ss_pred CCCCCCcCCH-------HHHHHHHHHHHhcCCceeEEEEeC-CCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcC
Q 046900 175 DSSNNFQITP-------QALEAAYKEAESKDMRVRGVLITN-PSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGS 245 (442)
Q Consensus 175 ~~~~~~~~d~-------~~l~~~l~~~~~~~~~~~~v~l~~-P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~ 245 (442)
... ...+. +.+++.+.+ ++.+|++.. ...-.|... +.+-+++|.++|++|++++|.||++..+
T Consensus 176 ~~~--~~~~~~~~~~~~~~~~~~~~~------~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~ 247 (422)
T PRK05630 176 PPV--RGSSPQEISEYLRSLELLIDE------TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGF 247 (422)
T ss_pred Ccc--cCCChHHHHHHHHHHHHHHhh------ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCC
Confidence 210 01111 233333322 566666654 266677754 5667999999999999999999999765
Q ss_pred CCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH--------ccccCCCcHHHHH
Q 046900 246 AFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR--------MSSFTLISSQTQY 316 (442)
Q Consensus 246 ~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~--------~~~~~~~s~~~q~ 316 (442)
...|..+ ......- .+| | -+|+|.++ .| ..+|++++ ++.+.+.+.. ....+..+++...
T Consensus 248 GrtG~~~-a~~~~gv-----~PD--i--~t~gK~l~-gG~~p~~av~~-~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~a 315 (422)
T PRK05630 248 GRTGELF-ATLAAGV-----TPD--I--MCVGKALT-GGFMSFAATLC-TDKVAQLISTPNGGGALMHGPTFMANPLACA 315 (422)
T ss_pred CcCchhh-HHHhcCC-----CCC--e--eeeechhh-cCccccceeec-cHHHHHHHhccCCCCccccCCCCcCCHHHHH
Confidence 4333211 1111100 112 2 27899986 67 48899998 5666666542 1223445666666
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee--cCCceEEEEEecCCcccccChhhHHHHHHHHHHcC
Q 046900 317 LLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECL--KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEV 393 (442)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 393 (442)
++.+.|+... + ...++.+++.-+++.+.|+++ ..... ...-|+++-+++.... ....+...++++
T Consensus 316 aa~aaL~~l~---~--~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~~------~~~~~~~~~~~~- 383 (422)
T PRK05630 316 VAHASLEIIE---T--GMWRKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEMEQPV------DMEEATQAAVDH- 383 (422)
T ss_pred HHHHHHHHHH---h--CcHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccccEEEEEECCcc------cHHHHHHHHHHC-
Confidence 6665554211 1 011223333333444444322 11111 1233667777775421 145677777776
Q ss_pred cEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 394 KLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 394 gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
||.+.+. + ..+|+..+ .++++++++++++|.+++..
T Consensus 384 Gl~~~~~------g-~~l~~~PpL~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 384 GVWLRPF------G-RLVYVMPPYITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred CeEEEec------C-CEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence 9999763 1 47898876 45899999999999999864
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4e-12 Score=126.53 Aligned_cols=360 Identities=13% Similarity=0.095 Sum_probs=193.7
Q ss_pred CCCCCCCCceeeeecc--cccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCC
Q 046900 41 YEESTNPSGVIQMGLA--ENQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRA 116 (442)
Q Consensus 41 ~~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 116 (442)
|..+.....+||+..+ ...+ .++.+.+.+.+..... ..+....-..+....+|+.+.+...
T Consensus 23 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~------------~~~~~~~~~~~~~~~lae~L~~~~p--- 87 (443)
T PRK07483 23 YLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRL------------AYAHTSFFTTEPAEALADRLVAAAP--- 87 (443)
T ss_pred EEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhc------------cCccccccCCHHHHHHHHHHHHhCC---
Confidence 3334556778898654 3333 2355555555443211 0000000113445566666664321
Q ss_pred ccCCCcEEEecChHHHHHHHHHhhcC-------CC-CeEEEcCCCCcChHHhHhhhcCc------------EEEEEecCC
Q 046900 117 KFDLNRIVVTAGATAANELLTFILAD-------PG-DALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCDS 176 (442)
Q Consensus 117 ~~~~~~i~~t~G~~~ai~~~~~~l~~-------~g-d~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~~ 176 (442)
-..+.++++++++++++.+++.... +| .+|+...-+|.+....+....|- .+..++...
T Consensus 88 -~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~ 166 (443)
T PRK07483 88 -AGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCY 166 (443)
T ss_pred -CCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCc
Confidence 1236899999999999998875431 23 46888787887654322111111 111222110
Q ss_pred CCCCcC-----C--------HHHHHHHHHHHHhcCCceeEEEEeCCCC-CCCc-CCCHHHHHHHHHHHHhcCcEEEEecc
Q 046900 177 SNNFQI-----T--------PQALEAAYKEAESKDMRVRGVLITNPSN-PLGA-TIQRSVLEELLDFATRKNIHLVSDEI 241 (442)
Q Consensus 177 ~~~~~~-----d--------~~~l~~~l~~~~~~~~~~~~v~l~~P~N-PtG~-~~~~~~l~~l~~~~~~~~~~vi~De~ 241 (442)
.|.. + ++.+++.+... ...++.+|++..-.. -.|. ..+.+-+++|.++|++||+++|.||+
T Consensus 167 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV 242 (443)
T PRK07483 167 --AYREQRAGESDEAYGQRLADELEAKILEL--GPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEV 242 (443)
T ss_pred --cccccccCCCHHHHHHHHHHHHHHHHHhc--CCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecc
Confidence 0110 0 24555545321 123555555553332 3465 45667799999999999999999999
Q ss_pred CCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc-eeEEEeecCHHHHHHHHH------ccccCCCcHHH
Q 046900 242 YSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF-RVGTIYSYNDKVVTTARR------MSSFTLISSQT 314 (442)
Q Consensus 242 y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~-RiG~i~~~~~~~~~~~~~------~~~~~~~s~~~ 314 (442)
...+...|..+ ....+.- .+. +-+++|.++ .|+ .+|.+++ .+.+.+.+.. ....+..++++
T Consensus 243 ~tGfGRtG~~~-a~~~~gv------~PD---iv~~gK~l~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~h~~T~~gnpl~ 310 (443)
T PRK07483 243 MCGMGRTGTLF-ACEEDGV------APD---LVTIAKGLG-AGYQPIGAVLA-SDRIYDAIADGSGFFQHGHTYLGHATA 310 (443)
T ss_pred eeCcccCcHHH-HHhhcCC------CCC---eeeehhhhc-cCccccEEEEE-cHHHHHHHhcCCCccccCCCCCCCHHH
Confidence 98764444311 1111111 122 235799998 886 9999999 5666666542 11234457777
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHH----hCCCeeecCCceEEEEEecCCcccc-----cChhhHHHH
Q 046900 315 QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLR----SAGIECLKGNAGLFCWMNLSPLLEE-----QTREGELAL 385 (442)
Q Consensus 315 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~g~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~l 385 (442)
..++.+.|+-.+ + ....+..++.-++|.+.|+ +++.......-|+++-+++...... ........+
T Consensus 311 ~aaa~a~l~~i~---~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~ 385 (443)
T PRK07483 311 CAAALAVQRVIA---E--DGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARI 385 (443)
T ss_pred HHHHHHHHHHHH---h--cCHHHHHHHHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHH
Confidence 666666664211 1 1122223333333334433 2332222234556666666321100 001123567
Q ss_pred HHHHHHcCcEEEeCCCC-CCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 386 WDSMLHEVKLNISPGSS-CHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 386 ~~~l~~~~gi~v~pg~~-f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
...++++ ||++.+... ........+|+... .++++++++++++|.+++.+..
T Consensus 386 ~~~~~~~-Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~ 439 (443)
T PRK07483 386 KREAMAR-GLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAAL 439 (443)
T ss_pred HHHHHHC-CcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7788777 999987421 11111357999876 4589999999999999998654
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-12 Score=127.08 Aligned_cols=253 Identities=17% Similarity=0.136 Sum_probs=176.7
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCC--------C------CeEEEcCCCCcChHHhH
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADP--------G------DALLVPTPYYPGFDRDL 161 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~--------g------d~Vl~~~p~y~~~~~~~ 161 (442)
+...+.+.+.+++.+.++.+ ..-.-.+|+|+|+++.+.+.+.... + ..|+++.-.|..+..++
T Consensus 98 ~a~~~E~~~v~~l~~l~~~~---~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa 174 (460)
T COG0076 98 AAAELEERVVNMLSDLLGAP---EEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAA 174 (460)
T ss_pred hHHHHHHHHHHHHHHHhCCC---CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHH
Confidence 67899999999999987732 3446889999999999776554211 1 16899999999999999
Q ss_pred hhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEecc
Q 046900 162 RWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEI 241 (442)
Q Consensus 162 ~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~ 241 (442)
.. +|+++..++++.. .+.+|++++++.+.+....+ +|+.+-++.+||.+=+ +++|.++|+++++++.+|.+
T Consensus 175 ~~-lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~iDd---i~~ia~ia~~~~i~lHVDAA 245 (460)
T COG0076 175 RY-LGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGSIDD---IEELADIAEEYGIWLHVDAA 245 (460)
T ss_pred HH-hCCCceeEEeccC-ccccCHHHHHHHHHhhccCc----eEEEEecCCCCCccCC---HHHHHHHHHHcCCcEEEEcc
Confidence 95 9999999999875 78999999999999742111 3777788999999866 88889999999999999999
Q ss_pred CCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCH-HHHHHHHHccccCC----------C
Q 046900 242 YSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYND-KVVTTARRMSSFTL----------I 310 (442)
Q Consensus 242 y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~-~~~~~~~~~~~~~~----------~ 310 (442)
|+.+...-...... ++-. .....-+.-+++|.. ++-..+||++..++ .+.+.+.....++. .
T Consensus 246 ~GG~~~pf~~~~~~--~~f~----l~~vdSIt~d~HK~g-~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~ 318 (460)
T COG0076 246 FGGFLLPFLEPDGR--WDFG----LEGVDSITVDGHKYG-LAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILG 318 (460)
T ss_pred ccceeecccCccch--hhcC----CCCceEEEECccccc-CCCCCceEEEEECHHHhhhhhhcccccCCCCCcCceeEee
Confidence 99866421111111 1111 112223356999965 57788999999877 45554432221111 1
Q ss_pred cH-----HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCceEEEEEecCC
Q 046900 311 SS-----QTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAG-IECLKGNAGLFCWMNLSP 372 (442)
Q Consensus 311 s~-----~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~ 372 (442)
+. +.+++....+. .+-++++.++..+..+++.+.|++.| +++..+.....+.++.++
T Consensus 319 sr~~~~~~~~~~~l~~lG-----~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~ 381 (460)
T COG0076 319 SRPGRQALALYANLRRLG-----REGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKD 381 (460)
T ss_pred ccchHHHHHHHHHHHHhC-----HhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCC
Confidence 11 22333333332 23356777788889999999999986 888764455567777755
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.4e-12 Score=124.45 Aligned_cols=307 Identities=12% Similarity=0.072 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC-------C-CCeEEEcCCCCcChHHhHhhhcCc---
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD-------P-GDALLVPTPYYPGFDRDLRWRTGI--- 167 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~-------~-gd~Vl~~~p~y~~~~~~~~~~~G~--- 167 (442)
+.+..+|+.+.+... ...+.+++++++++|++.+++.... + ..+|+...-+|.+....+....|.
T Consensus 90 ~~~~~lae~L~~~~p----~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~ 165 (466)
T PRK07030 90 EPVIELSERLVKITP----PGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALF 165 (466)
T ss_pred HHHHHHHHHHHHhCC----CCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccc
Confidence 445556666654321 1236899999999999998876521 2 357888888887754332211121
Q ss_pred ---------EEEEEecCCCC--CCcC--------CHHHHHHHHHHHHhcCCceeEEEEeC-CCCCCCcC-CCHHHHHHHH
Q 046900 168 ---------KIVPIHCDSSN--NFQI--------TPQALEAAYKEAESKDMRVRGVLITN-PSNPLGAT-IQRSVLEELL 226 (442)
Q Consensus 168 ---------~v~~v~~~~~~--~~~~--------d~~~l~~~l~~~~~~~~~~~~v~l~~-P~NPtG~~-~~~~~l~~l~ 226 (442)
.+..+|..... .+.. +++.+++.+.+ .+.++.+|++.. ...-.|.+ .+.+-+++|.
T Consensus 166 ~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~---~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr 242 (466)
T PRK07030 166 TETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAE---HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLR 242 (466)
T ss_pred cccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEecccccCCCcccCCHHHHHHHH
Confidence 12222211100 0011 24556666653 234566666553 25556764 4566799999
Q ss_pred HHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH--
Q 046900 227 DFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR-- 303 (442)
Q Consensus 227 ~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~-- 303 (442)
++|++||+++|.||+...+...+..+ ....+.- .+.+ -+++|.++ .| +.+|.+++ ++++.+.+..
T Consensus 243 ~lc~~~g~llI~DEV~TGfGRtG~~~-a~~~~gv------~PDi---v~~gKgl~-gG~~Pi~av~~-~~ei~~~~~~~~ 310 (466)
T PRK07030 243 EACDRYGVHLIHDEIAVGFGRTGTMF-ACEQAGI------RPDF---LCLSKALT-GGYLPLAAVLT-TDTVYQAFYDDY 310 (466)
T ss_pred HHHHHcCCEEEEeehhhCcCccccch-HHHhcCC------CCCE---Eeeehhcc-CCcccceEEEe-cHHHHHHHhccc
Confidence 99999999999999998765445322 1111111 1222 35699998 89 49999999 5666665531
Q ss_pred -------ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh---CCCeeecCCceEEEEEecCCc
Q 046900 304 -------MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS---AGIECLKGNAGLFCWMNLSPL 373 (442)
Q Consensus 304 -------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~g~~~~~~~~g~~~~~~~~~~ 373 (442)
....+..++++.+++.+.|+-.. + ....++.++.-+++.+.|++ +..-.....-|+++-+++...
T Consensus 311 ~~~~~~~h~~T~~gnpla~aaa~a~L~~i~---~--~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~ 385 (466)
T PRK07030 311 PTLRAFLHSHSYTGNPLACAAALATLDIFE---Q--DNVIENNRALARRMAEATAHLADHPHVAEVRQTGMILAIEMVQD 385 (466)
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHH---h--cCHHHHHHHHHHHHHHHHHHHhcCCCEEEeEeceeEEEEEeccC
Confidence 12224457777777666665211 1 11222333333344444433 222111234566777776431
Q ss_pred ccc-----cChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 374 LEE-----QTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 374 ~~~-----~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
... ........+...++++ ||++.+. ...+|+..+ .++++++++++++|.+++++.
T Consensus 386 ~~~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~-------g~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 386 KASKTPYPWQERRGLKVYQHALER-GALLRPL-------GSVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred ccccccCcchhHHHHHHHHHHHHC-CeEEEec-------CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 110 0001124677777776 9999762 136888755 459999999999999999875
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9e-12 Score=135.35 Aligned_cols=355 Identities=10% Similarity=0.047 Sum_probs=198.5
Q ss_pred CCCCCceeeeeccccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 44 STNPSGVIQMGLAENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 44 ~~~~~~~i~l~~~~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
+.....+||+..+...++ ++.+.+.+.++.... .....|. .+....+|+.+..... -.-+
T Consensus 620 D~dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l---------~~~~~~~-----~~~~~~lAe~L~~~~p----~~~~ 681 (1013)
T PRK06148 620 DNRGRAYLDCFNNVCHVGHAHPRVVAAAARQAARL---------NTNTRYL-----HDAIVAYAERLTATLP----DGLT 681 (1013)
T ss_pred ECCCCEEEEcccChhhcCCCCHHHHHHHHHHHhhc---------CCcCCcC-----CHHHHHHHHHHHHhCC----CCcC
Confidence 445667888876654443 355665555543210 0111221 3445556666654321 1236
Q ss_pred cEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcC------------cEEEEEecC--CCCCCcC-C-
Q 046900 122 RIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTG------------IKIVPIHCD--SSNNFQI-T- 183 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G------------~~v~~v~~~--~~~~~~~-d- 183 (442)
.+++++++++|++.+++... .....|+...-+|.+....+....| -.+..++.. ....|.. +
T Consensus 682 ~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 761 (1013)
T PRK06148 682 VAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDA 761 (1013)
T ss_pred EEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChh
Confidence 79999999999999887652 2235788888888765432110011 011111111 0011211 1
Q ss_pred ------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHH
Q 046900 184 ------PQALEAAYKEAESKDMRVRGVLITNPSNPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIA 256 (442)
Q Consensus 184 ------~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~ 256 (442)
.+.+++.+......+.++.++++..-..-.|. ..+.+-++++.++|++||+++|.||+...|...|..+....
T Consensus 762 ~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e 841 (1013)
T PRK06148 762 EHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFE 841 (1013)
T ss_pred hhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhh
Confidence 13455555432222345655555433444455 45667799999999999999999999987654443221211
Q ss_pred HHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH---ccccCCCcHHHHHHHHHHhcCchhHHHHHH
Q 046900 257 EILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR---MSSFTLISSQTQYLLASMLSNKKFTENYIK 333 (442)
Q Consensus 257 ~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~---~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~ 333 (442)
...- .++ +-+++|.+| .|+.+|.+++ .+++.+.+.. ..+.+..++++.+++.+.|+-.. + +
T Consensus 842 ~~gv-----~PD----ivt~gK~lg-gG~Plgav~~-~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~--~---e 905 (1013)
T PRK06148 842 TQGV-----VPD----IVTMGKPIG-NGHPMGAVVT-TREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIE--D---E 905 (1013)
T ss_pred hcCC-----Ccc----eeeeccccc-CCcceEEEEE-cHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHh--h---c
Confidence 1111 112 346799998 8999999999 5677666542 22334557777776666655211 1 0
Q ss_pred HHHHHHHHHHHHHHHHHHh----CCCeeecCCceEEEEEecCCcccc--cChhhHHHHHHHHHHcCcEEEeCCCCCCCCC
Q 046900 334 TNRERLQKRYQMIIEGLRS----AGIECLKGNAGLFCWMNLSPLLEE--QTREGELALWDSMLHEVKLNISPGSSCHCSE 407 (442)
Q Consensus 334 ~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~ 407 (442)
...+..++.-++|.+.|++ +++......-|+++-+++...... ........++..++++ ||++.+... .
T Consensus 906 ~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~g~----~ 980 (1013)
T PRK06148 906 DLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARER-GILIGTEGP----H 980 (1013)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhC-CeEEeccCC----C
Confidence 1222233333344444433 333222234566777776432111 1112245677788776 999987421 2
Q ss_pred CCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 408 PGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 408 ~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
...+||... .++++++++++++|.+++.+.
T Consensus 981 ~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 981 DNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred CCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 367888876 459999999999999999764
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.7e-12 Score=125.11 Aligned_cols=353 Identities=12% Similarity=0.081 Sum_probs=194.5
Q ss_pred CCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCcc
Q 046900 43 ESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKF 118 (442)
Q Consensus 43 ~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~ 118 (442)
.+...+.+||+..+- ..+ .++.+.+.+.++...... .....+ ..+.+..+|+.+.+... .
T Consensus 51 ~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~-------~~~~~~-----~~~~~~~lae~L~~~~p----~ 114 (460)
T PRK06916 51 YDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAH-------STLLGL-----ANVPSILLAEKLIEVVP----E 114 (460)
T ss_pred EeCCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCC-------cccccc-----CCHHHHHHHHHHHHhCC----C
Confidence 345567788886542 222 345555555544321100 000011 12444556666654321 1
Q ss_pred CCCcEEEecChHHHHHHHHHhhcC-------C-CCeEEEcCCCCcChHHhHhhhcCc------------EEEEEecCCCC
Q 046900 119 DLNRIVVTAGATAANELLTFILAD-------P-GDALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCDSSN 178 (442)
Q Consensus 119 ~~~~i~~t~G~~~ai~~~~~~l~~-------~-gd~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~~~~ 178 (442)
..+.+++++++++|++.+++.... + ..+|+...-+|.+....+....|. .+..+|.....
T Consensus 115 ~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~ 194 (460)
T PRK06916 115 GLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTY 194 (460)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCccc
Confidence 236899999999999998876532 3 357888888887754322211121 12222221000
Q ss_pred --CCc--------CCHHHHHHHHHHHHhcCCceeEEEEeC-CCCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 179 --NFQ--------ITPQALEAAYKEAESKDMRVRGVLITN-PSNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 179 --~~~--------~d~~~l~~~l~~~~~~~~~~~~v~l~~-P~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
.+. -+++.+++.+++ .+.++.+|++.. ...-.|.+ .+.+-+++|.++|++||+++|.||++..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~G 271 (460)
T PRK06916 195 RSPYGNDKAEIVKKHLEELEELLKE---KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFG 271 (460)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCC
Confidence 011 124556666653 234666666654 35666765 477779999999999999999999998754
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH---------ccccCCCcHHHHH
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR---------MSSFTLISSQTQY 316 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~---------~~~~~~~s~~~q~ 316 (442)
..|..+ ....+. ....+ -+++|.++ .| +.+|.+++ .+++.+.+.. ....+..++++..
T Consensus 272 RtG~~~-a~~~~g------v~PDi---v~~gK~l~-gG~~Pi~av~~-~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~a 339 (460)
T PRK06916 272 RTGKMF-ACEHEN------VTPDI---MTAGKGLT-GGYLPIAITVT-TDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCA 339 (460)
T ss_pred cCchhh-HHHhcC------CCCCe---eeeehhhh-cCccccceeee-cHHHHHHhhccccccCccccCCCCCCCHHHHH
Confidence 444321 111111 11222 36799998 88 59999999 5566655431 1112345677766
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC---CCeeecCCceEEEEEecCCccccc-----ChhhHHHHHHH
Q 046900 317 LLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA---GIECLKGNAGLFCWMNLSPLLEEQ-----TREGELALWDS 388 (442)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~l~~~ 388 (442)
++.+.|+.. ++ ....+.+++.-+++.+.|+++ ........-|+++-+++....... .......+...
T Consensus 340 aa~a~l~~l---~~--~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~ 414 (460)
T PRK06916 340 VALANLELY---EK--TNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKR 414 (460)
T ss_pred HHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHH
Confidence 666665421 11 112233344444444444432 211122234456666664211100 00113467777
Q ss_pred HHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 389 MLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 389 l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
++++ ||++.|. ...+|+..+ .++++++++++++|.+++++...
T Consensus 415 ~~~~-Gvl~~~~-------g~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~~ 458 (460)
T PRK06916 415 SREL-GMLTRPL-------GNTIVFMPPLASTIDELDEMLRILYKAISDVTE 458 (460)
T ss_pred HHHC-CeEEEec-------CCEEEEeCCcccCHHHHHHHHHHHHHHHHhhcc
Confidence 7776 9999873 136888754 45999999999999999987644
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-11 Score=121.97 Aligned_cols=314 Identities=15% Similarity=0.058 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHhCCCCccC-CCcEEEe-cChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCc-------
Q 046900 99 SFRQAMASFMEQIRGGRAKFD-LNRIVVT-AGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGI------- 167 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~-~~~i~~t-~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~------- 167 (442)
+.+..+|+.+...... ... .+.++++ +++++|++.+++... ....+|+...-+|.+....+....|.
T Consensus 106 ~~~~~la~~L~~~~p~--~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~ 183 (464)
T PRK06938 106 PVKDQFVQDLFASLPE--AFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPL 183 (464)
T ss_pred HHHHHHHHHHHHhCcc--cccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccC
Confidence 4445566655543210 011 1356665 789999998887642 22367888888887754332211110
Q ss_pred -----EEEEEecCCCC--CCc--------CCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHh
Q 046900 168 -----KIVPIHCDSSN--NFQ--------ITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATR 231 (442)
Q Consensus 168 -----~v~~v~~~~~~--~~~--------~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~ 231 (442)
.+..+|..... .+. .+.+.+++.+.+......++.+|++..-..-.|.+. +.+-++++.++|++
T Consensus 184 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~ 263 (464)
T PRK06938 184 GALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEE 263 (464)
T ss_pred CCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHH
Confidence 12233322110 011 125667777754211112455555543344457654 57779999999999
Q ss_pred cCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCC
Q 046900 232 KNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTL 309 (442)
Q Consensus 232 ~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~ 309 (442)
||+++|.||+...|...|. +...... +..+.+ -+++|.+| .|+.+|.+++. +.+ +.+.. ..+.+.
T Consensus 264 ~giLlI~DEV~tGfGRtG~----~~a~e~~---gv~PDi---v~~gKglg-gG~PlsAv~~~-~~~-~~~~~~~~~~T~~ 330 (464)
T PRK06938 264 AGIPLIVDEIQSGFGRTGK----MFAFEHA---GIIPDV---VVLSKAIG-GSLPLAVVVYR-EWL-DTWQPGAHAGTFR 330 (464)
T ss_pred cCCEEEEeccccCCCcCcH----HHHHHhc---CCCCCE---EEeecccc-CCCceEEEeeh-hHh-hccCCCCCCCCCC
Confidence 9999999999988644443 1111110 011222 35699998 89999999984 444 33321 223345
Q ss_pred CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh----CCCeeecCCceEEEEEecCCcccc------c--
Q 046900 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS----AGIECLKGNAGLFCWMNLSPLLEE------Q-- 377 (442)
Q Consensus 310 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~~~~~------~-- 377 (442)
.++++.+++.+.|+... ++ ...+..++.-+++.+.|++ +++......-|+++.+++...... .
T Consensus 331 gnpla~Aaa~a~L~~l~--~~---~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~ 405 (464)
T PRK06938 331 GNQMAMAAGSATLRYIK--EH---RLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPA 405 (464)
T ss_pred cCHHHHHHHHHHHHHHH--Hh---HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCc
Confidence 67777777666665211 11 1122222333333333332 333233345567777777432110 0
Q ss_pred ChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 378 TREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 378 ~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.......++..++++ ||.+.++..+ ...+|+..+ .+++++++++++++.+++.+.
T Consensus 406 ~~~~~~~~~~~~~~~-Gll~~~~g~~----~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~ 461 (464)
T PRK06938 406 NGELASLIQRECLRR-GLILELGGRH----GSVVRFLPPLIITAEQIDEVAEIFAEAVAAA 461 (464)
T ss_pred cHHHHHHHHHHHHHC-CeEEeecCCC----CCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 011245667777776 9999875322 256898755 459999999999999998764
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-12 Score=132.80 Aligned_cols=318 Identities=15% Similarity=0.166 Sum_probs=194.1
Q ss_pred CCcccccCC---CcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh----cCC----CCeEEEcCCC
Q 046900 85 FRENALFQD---YHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL----ADP----GDALLVPTPY 153 (442)
Q Consensus 85 ~~~~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l----~~~----gd~Vl~~~p~ 153 (442)
|...+-|.| .+|+.++...+.+++.+..| .+.-.+.-.+| .++....+.++ ..+ .+.|+++.-.
T Consensus 526 F~t~hPyqp~e~sQG~lq~i~elq~~l~eLtG----md~~Sl~p~sG-A~gE~A~Lmair~yh~~~Ge~~r~~vLIp~sa 600 (954)
T PRK12566 526 FAQLHPFAPREQAEGYRAMIDELEAWLCAITG----FDAICMQPNSG-AQGEYAGLLAIRRYHRSRGQSQRDICLIPSSA 600 (954)
T ss_pred hhcCCCCCchhhhcCHHHHHHHHHHHHHHHHC----CCeEeecCCch-HHHHHHHHHHHHHHHHhcCCCCCCEEEecccc
Confidence 344566777 68999999999999998876 23333433344 33332333332 222 3578888877
Q ss_pred CcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcC
Q 046900 154 YPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKN 233 (442)
Q Consensus 154 y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~ 233 (442)
|......+.. .|++++.++.++++ .+|+++|++.+.+. ..++.+|++++|++-++. .+.+++|+++|+++|
T Consensus 601 HgtNpasa~~-~GieVv~Vp~D~~G--~iDle~L~a~I~~~---~~~laaVmiT~Pnt~Gv~---e~~V~eI~~iah~~G 671 (954)
T PRK12566 601 HGTNPASAQM-AGMRVVIVECDPDG--NVDLDDLKAKAAAA---GDRLSCLMITYPSTHGVY---EEGIREICEVVHQHG 671 (954)
T ss_pred cccCHHHHHH-CCCEEEEeccCCCC--CcCHHHHHHHhhcc---CCCEEEEEEEecCcCcee---cchHHHHHHHHHHcC
Confidence 7555555664 89999999998654 69999999998732 237777888888775543 355999999999999
Q ss_pred cEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCC----CCceeEEEeecCHHHHHHHHHcc----
Q 046900 234 IHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGL----PGFRVGTIYSYNDKVVTTARRMS---- 305 (442)
Q Consensus 234 ~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~----~G~RiG~i~~~~~~~~~~~~~~~---- 305 (442)
+++++|.++.... .......++. --++.++++|+|+. .|.-+|.+.+ .+.+...+....
T Consensus 672 alv~vDgA~~~a~---~~l~~Pg~~G---------ADi~~~s~HKtf~~P~G~GGP~vG~iav-~~~L~pfLp~~P~~d~ 738 (954)
T PRK12566 672 GQVYMDGANLNAQ---VGLARPADIG---------ADVSHMNLHKTFCIPHGGGGPGMGPIGV-RAHLAPFVANHPVVPV 738 (954)
T ss_pred CEEEEEeeChhhc---cCCCChhhcC---------CCEEEecCCcccCcCccCCCCccchhhh-hhhhhhhccCCCCcCC
Confidence 9999999986311 1222233343 33788999998852 2344566555 343444433221
Q ss_pred -----ccCCC------cHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEE--EEEecC
Q 046900 306 -----SFTLI------SSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLF--CWMNLS 371 (442)
Q Consensus 306 -----~~~~~------s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~--~~~~~~ 371 (442)
..... +.....++..++...+. + +++....-..+..++.+.|.+. ++.+.++.+.+| +.++++
T Consensus 739 ~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~--e-Lk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEfii~~~ 815 (954)
T PRK12566 739 EGPDPNNGAVSAAPWGSASILPISWMYIAMMGP--Q-LADASEVAILSANYLANQLGGAFPVLYRGRNERVAHECILDLR 815 (954)
T ss_pred CCCCCCCCceeecccchHHHHHHHHHHHHHHCH--H-HHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEEEEEcc
Confidence 01111 11222333344443222 2 4555555566778888888663 444432222222 223333
Q ss_pred CcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee--cCCHHHHHHHHHHHHHHHHHHH
Q 046900 372 PLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA--NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 372 ~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
...+..+ .+..++.++|++ +||...- ..|. ..+++|++.. . +++++++++++|+++.++..
T Consensus 816 ~l~~~~g-~~~~dvakRL~d-~Gihapt-~~fP--v~~~LmIepTE~e-skeEIDrf~eAL~~I~~e~~ 878 (954)
T PRK12566 816 PLKAQTG-ISEEDVAKRLMD-YGFHAPT-MSFP--VPGTLMVEPTESE-SKAELDRFVEAMLSIRAEIG 878 (954)
T ss_pred ccccccC-CCHHHHHHHHHH-CCcEEeE-Eeec--cCCEEEEEeeeeC-CHHHHHHHHHHHHHHHHHHH
Confidence 2221111 135779999984 5987543 3343 3678999986 4 89999999999999887743
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-12 Score=133.37 Aligned_cols=311 Identities=13% Similarity=0.128 Sum_probs=189.7
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHH---HHHhhc-----CCCCeEEEcCCCCcChHHhHhhhcC
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANEL---LTFILA-----DPGDALLVPTPYYPGFDRDLRWRTG 166 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~---~~~~l~-----~~gd~Vl~~~p~y~~~~~~~~~~~G 166 (442)
+|+.++...+.+|+.+..| ++.-.+...+| .++-.. +++... ...+.|+++.-.|......+.. .|
T Consensus 526 qG~lq~i~elq~~l~eltG----md~~Sl~p~aG-A~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~-~G 599 (939)
T TIGR00461 526 EGYQELIAQLEKWLCSITG----FDAISLQPNSG-AQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAM-AG 599 (939)
T ss_pred HHHHHHHHHHHHHHHHHHC----CCCcccCCchH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHH-CC
Confidence 6788899999999998877 44333433444 433332 223211 1235789999999777777774 89
Q ss_pred cEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 167 IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 167 ~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
++++.++.++++ .+|+++|++.+.+ .+.++++|++++|+| +|.+-+ .+++|+++|+++|.++++|.++....
T Consensus 600 ~~Vv~V~~d~~G--~iDle~L~~~i~~---~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDgAq~~al 671 (939)
T TIGR00461 600 MQVVPVNCDQDG--NIDLVDLKNKAEQ---HGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDGANMNAQ 671 (939)
T ss_pred CEEEEeccCCCC--CcCHHHHHHHHhh---cCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEecChhhC
Confidence 999999987544 6999999999975 234889999999999 787743 38899999999999999999985311
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC----CCCceeEEEeecCHHHHHHHH-H-c----------cccCCC
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG----LPGFRVGTIYSYNDKVVTTAR-R-M----------SSFTLI 310 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g----~~G~RiG~i~~~~~~~~~~~~-~-~----------~~~~~~ 310 (442)
. . ..+...+ +--+++.|.+|+|+ ..|-.+|++.+. +.+...+- . . .....+
T Consensus 672 ~-~--l~~Pg~~---------GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr-~~L~~~lPg~~v~~t~d~~greq~Iga~ 738 (939)
T TIGR00461 672 V-G--LTSPGDL---------GADVCHLNLHKTFCIPHGGGGPGMGPIGVK-SHLIPFLPKHDVVSMITGIGGSKSIGSV 738 (939)
T ss_pred C-C--CCCcccc---------CCCEEEecCCccCCCCCCCCCCCeEEEEEh-hhchhhcCCCcccccccCCCCccccccc
Confidence 1 1 1121222 33377889999764 345557999884 33333321 0 0 000111
Q ss_pred c------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC-CceE-E--EEEecCCcccccChh
Q 046900 311 S------SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKG-NAGL-F--CWMNLSPLLEEQTRE 380 (442)
Q Consensus 311 s------~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~g~-~--~~~~~~~~~~~~~~~ 380 (442)
+ ......+..++...+ .+-+++..+.--.+..++.+.|.+ ++++.-+ ..+. + +.++++......+ .
T Consensus 739 s~~~~g~a~~~l~a~~yi~~lG--~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~~~~g-~ 814 (939)
T TIGR00461 739 SAAPYGSASILPISWMYIKMMG--NEGLPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLKAKTG-I 814 (939)
T ss_pred cccccCcHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchhhhcC-C
Confidence 1 111111122222111 233566666666678888888876 4443322 1222 2 3345553211111 1
Q ss_pred hHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 381 GELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 381 ~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
...++.++|++. |+.-.. ..|...+.-.|+.+-.. ++++||++++.|.++-++..+
T Consensus 815 ~~~dIakrL~d~-G~hapt-~~~pv~g~lmiepTE~e-skeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 815 EAIDVAKRLQDY-GFHAPT-LSFPVPGTLMVEPTESE-SLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred CHHHHHHHHHhC-Ceeccc-cCCccCCeEEEEeeccC-CHHHHHHHHHHHHHHHHHHHH
Confidence 367899999887 997433 33433222235566666 899999999999888766543
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.2e-12 Score=126.71 Aligned_cols=356 Identities=13% Similarity=0.105 Sum_probs=191.3
Q ss_pred CCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCc
Q 046900 42 EESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAK 117 (442)
Q Consensus 42 ~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~ 117 (442)
..+...+.+||+..+. ..+ ..+.+.+.+.++..... ....+ .....+.+..+|+.+.+...
T Consensus 44 l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~---------~~~~~--~~~~~~~~~~lae~L~~~~p---- 108 (456)
T PRK07480 44 LWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELP---------YYNTF--FKTTHPPAIELAAKLAEVAP---- 108 (456)
T ss_pred EEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcC---------Ccccc--cccCCHHHHHHHHHHHHhCC----
Confidence 3345567788886542 223 23555555554432100 00000 01224555666666665422
Q ss_pred cCCCcEEEecChHHHHHHHHHhhcC-------CC-CeEEEcCCCCcChHHhHhhhcCcE------------EEEEecCC-
Q 046900 118 FDLNRIVVTAGATAANELLTFILAD-------PG-DALLVPTPYYPGFDRDLRWRTGIK------------IVPIHCDS- 176 (442)
Q Consensus 118 ~~~~~i~~t~G~~~ai~~~~~~l~~-------~g-d~Vl~~~p~y~~~~~~~~~~~G~~------------v~~v~~~~- 176 (442)
...+.++++++++++++.+++.... +| .+|+...-+|.+.........|.. +..++...
T Consensus 109 ~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~ 188 (456)
T PRK07480 109 PGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYW 188 (456)
T ss_pred CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcc
Confidence 1246899999999999998875421 22 467777777776432211011211 11111100
Q ss_pred -CCCCcCC--------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 177 -SNNFQIT--------PQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 177 -~~~~~~d--------~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
...+..+ .+.+++.+.+. ...++.+|++.....-.|.+. +.+-+++|.++|++||+++|.||++..|.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfG 266 (456)
T PRK07480 189 FGEGGDMTPEEFGLAAARQLEAKILEL--GADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFG 266 (456)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 0000011 24454444321 123566666654455567755 55569999999999999999999998764
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc-eeEEEeecCHHHHHHHHH------ccccCCCcHHHHHHHH
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF-RVGTIYSYNDKVVTTARR------MSSFTLISSQTQYLLA 319 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~-RiG~i~~~~~~~~~~~~~------~~~~~~~s~~~q~~~~ 319 (442)
..|..+ ....+.- .++ +-+|+|.++ .|+ .+|.+++ ++.+.+.+.. ....+..++++.+++.
T Consensus 267 RtG~~~-a~~~~gv-----~PD----iv~~gK~l~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~ 334 (456)
T PRK07480 267 RTGEWF-GSQHFGI-----KPD----LMTIAKGLT-SGYIPMGAVGV-GDRVAEVLIEEGGEFNHGFTYSGHPVAAAVAL 334 (456)
T ss_pred cCcchh-hhhhcCC-----CCC----eeeeehhhc-cCCccceEEEE-cHHHHHHHhcCCCCcccCCCCCcCHHHHHHHH
Confidence 444322 1111111 122 346899997 784 8999999 5666666521 1223456777777777
Q ss_pred HHhcCchhHHHHHHHHHHHH-HHHHHHHHHHH---HhCCCeeecCCceEEEEEecCCcccc-cCh----hhHHHHHHHHH
Q 046900 320 SMLSNKKFTENYIKTNRERL-QKRYQMIIEGL---RSAGIECLKGNAGLFCWMNLSPLLEE-QTR----EGELALWDSML 390 (442)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~L---~~~g~~~~~~~~g~~~~~~~~~~~~~-~~~----~~~~~l~~~l~ 390 (442)
+.|+-.. + ....+.. ++.-+++.+.| .++++......-|+++-+++...... ..+ .....+...++
T Consensus 335 a~L~~l~---~--~~l~~~~~~~~g~~l~~~l~~l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (456)
T PRK07480 335 ANLRILR---D--EGIVERVRDDTGPYLQKRLRELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCF 409 (456)
T ss_pred HHHHHHH---h--CCHHHHHHHHHHHHHHHHHHHhhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHH
Confidence 6665211 1 0111222 12223333333 33332222234456777776321110 000 01245566676
Q ss_pred HcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 391 HEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 391 ~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
++ ||++.+. ...+|++.. .++++++++++++|.+++.+..+
T Consensus 410 ~~-Gll~~~~-------~~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~ 451 (456)
T PRK07480 410 AN-GLIMRAV-------GDRMIISPPLVITHAEIDELVEKARKALDATAA 451 (456)
T ss_pred HC-CcEEeec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66 9999752 146899876 45899999999999999987643
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.3e-14 Score=129.60 Aligned_cols=186 Identities=21% Similarity=0.308 Sum_probs=131.0
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH--hHhhhcCc
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR--DLRWRTGI 167 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~--~~~~~~G~ 167 (442)
.|+......+|++.+++.++ .+..+++.+++.+..++++++++|++.|++..++|..... ......|+
T Consensus 24 ~Yg~D~~~~~l~~~i~~l~g----------~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~ga~~~~~G~ 93 (290)
T PF01212_consen 24 AYGEDPTTARLEERIAELFG----------KEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDETGAIEELSGA 93 (290)
T ss_dssp CTTSSHHHHHHHHHHHHHHT----------SSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSSTTHHHHHTTC
T ss_pred ccCCChhHHHHHHHHHHHcC----------CCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeeccchhhHhcCc
Confidence 47766667788888888775 4566789999999999999999999999999997653322 22224899
Q ss_pred EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCC-CCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 168 KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP-LGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 168 ~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NP-tG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
++++++.++.+ .+|+++|++.+.....+..++++|++++|+|- -|.++|.+++++|.++|++||+.++.|.+-....
T Consensus 94 ~~~~l~~~~~G--~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a 171 (290)
T PF01212_consen 94 KLIPLPSDDDG--KLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANA 171 (290)
T ss_dssp EEEEEBECTGT--BB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHH
T ss_pred EEEECCCcccC--CCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHh
Confidence 99999976523 58999999999875434457899999999996 4899999999999999999999999999943111
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHH
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVV 298 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~ 298 (442)
. .....++.++... -. ++.-|++|.+|+++ |-+++-++.++
T Consensus 172 ~-~~~~~~~~e~~~~------~D-~v~~~~tK~~g~~~---Gavl~~~~~~i 212 (290)
T PF01212_consen 172 A-AALGVSLAEIAAG------AD-SVSFGGTKNGGAPG---GAVLAGNKEFI 212 (290)
T ss_dssp H-CHHHHHHHHHHTT------SS-EEEEETTSTT-SSS---EEEEEESHHHH
T ss_pred h-hcccccHHHHhhh------CC-EEEEEEEccccccc---ceEEEechHHH
Confidence 0 0112244455432 22 34468999988766 55544455533
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-11 Score=122.54 Aligned_cols=292 Identities=16% Similarity=0.189 Sum_probs=169.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcC------hHHhHhhhcCcEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPG------FDRDLRWRTGIKIV 170 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~------~~~~~~~~~G~~v~ 170 (442)
+..+++.+|++++ .+..+++++++.++.+++.+ +.+||+|++....|.. +...++ ..|++++
T Consensus 124 ~~~le~~lA~l~g----------ae~alvv~sg~aAi~l~l~~-l~~GdeVIvs~~e~v~~ggs~~i~~~~~-~~G~~~~ 191 (454)
T TIGR00474 124 YSHVEGLLCELTG----------AEDALVVNNNAAAVLLALNT-LAKGKEVIVSRGELVEIGGSFRIPDVME-QSGAKLV 191 (454)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHH-hCCcCEEEECCChhhhhcchhhHHHHHH-HcCCEEE
Confidence 4677888888765 33456777888889888855 5799999999866432 223455 3899999
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC--C--cCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPL--G--ATIQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPt--G--~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
.++.+. ..|++++++++.+ ++++|++.+++|++ | .+.+ +++|+++|+++|+++++|...+.+.
T Consensus 192 ~v~~~~----~~~l~dle~aI~~------~T~lv~~~h~sN~~~~G~~~~~d---l~~I~~la~~~g~~vivD~~sG~l~ 258 (454)
T TIGR00474 192 EVGTTN----RTHLKDYEDAITE------NTALLLKVHTSNYRIVGFTEEVS---IAELVALGREHGLPVMEDLGSGSLV 258 (454)
T ss_pred EeCCCC----CCCHHHHHHhcCc------CCEEEEEEccCcccccCCCCCCC---HHHHHHHHHHcCCeEEEECCCcccc
Confidence 987643 1478999998865 88999999999995 6 3556 8889999999999999998644321
Q ss_pred ----CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc--cCCCcHHH----HH
Q 046900 247 ----FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS--FTLISSQT----QY 316 (442)
Q Consensus 247 ----~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~----q~ 316 (442)
|+-...+.+..... .+--+++.|.+|.+|-| ..|++++. +.+.+.+++..- ...+.... +.
T Consensus 259 ~~~~~gl~~~p~~~~~~~------~GaDiv~fSg~K~LgGp--~~G~i~g~-~~~i~~l~~~~l~r~lr~~k~~la~l~~ 329 (454)
T TIGR00474 259 DLSRYGLPDEPTVQEVIA------AGVDLVTFSGDKLLGGP--QAGIIVGK-KELIERLKKNPLTRALRVDKLTLAALEA 329 (454)
T ss_pred cchhccCCCCcccccHhH------cCCCEEEecCccccCCC--eEEEEEEC-HHHHHhhhhchhHHHHhhChHHHHHHHH
Confidence 10000111112211 13347889999998534 48999985 444444332110 01122222 22
Q ss_pred HHHHHhcCch-hH----HHHHHHHHHHHHHHHHHHHHHHHhC---CC--eeecCC----ceEEEEEecCCcccc--cChh
Q 046900 317 LLASMLSNKK-FT----ENYIKTNRERLQKRYQMIIEGLRSA---GI--ECLKGN----AGLFCWMNLSPLLEE--QTRE 380 (442)
Q Consensus 317 ~~~~~l~~~~-~~----~~~~~~~~~~~~~~~~~l~~~L~~~---g~--~~~~~~----~g~~~~~~~~~~~~~--~~~~ 380 (442)
.+..++...+ |. .+.+....+...++...+.+.|++. ++ ++.+.. ||-+--..+|...-. ....
T Consensus 330 ~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~~ 409 (454)
T TIGR00474 330 TLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPDGL 409 (454)
T ss_pred HHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecCCC
Confidence 2223333211 11 1222333456666777888888662 22 222221 221111112211000 0001
Q ss_pred hHHHHHHHHHHcCc--EEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHH
Q 046900 381 GELALWDSMLHEVK--LNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRI 430 (442)
Q Consensus 381 ~~~~l~~~l~~~~g--i~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l 430 (442)
.+.++.+.|. +.. |..+ -.++.+.|-+.++.+++++..+++|
T Consensus 410 ~~~~l~~~lr-~~~~~ii~r-------~~~~~~~ld~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 410 SAEKLEARLR-ELPPPIIGR-------IEDDRFLLDLRTLLEDEEELLIEAL 453 (454)
T ss_pred CHHHHHHHHh-cCCCCEEEE-------EECCEEEEEeCcCCHHHHHHHHHHh
Confidence 2567776664 424 3333 2356788888888888888887765
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-12 Score=123.70 Aligned_cols=283 Identities=12% Similarity=0.099 Sum_probs=168.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCC-CcEEEe-cChHHHHHHHHHhhcCCCCeEEEcCCCCcC-hHHhHhhh-cCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDL-NRIVVT-AGATAANELLTFILADPGDALLVPTPYYPG-FDRDLRWR-TGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~-~~i~~t-~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~-~~~~~~~~-~G~~v~~v 172 (442)
+.+.|+.++++++ ++. .+|+++ +++|.+++.++..++.+ +.+++..-.|.. +...+..+ .+.++..+
T Consensus 43 ~~~~r~~l~~l~~--------~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~ 113 (361)
T TIGR01366 43 VGRVREGLAELFS--------LPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLGEPIIV 113 (361)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhccCCceEE
Confidence 4667777777765 433 478886 55999999999998743 333333333432 22333311 12355566
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+.+.. ..++.+ + ..++++|.++..+|.||.+.|.++ | ++++|+++|+|.+.+- +. ..
T Consensus 114 ~~~~~--~~~~~~-----~------~~~~~lV~~~h~et~tG~~~pi~~---I---~~~~g~~~iVDavqs~---g~-~~ 170 (361)
T TIGR01366 114 TADPG--SAPEPQ-----A------DPGVDVIAWAHNETSTGVAVPVRR---P---EGSDDALVVIDATSGA---GG-LP 170 (361)
T ss_pred ecCCC--CCCCCc-----c------CCCCCEEEEcccCCccceeccccc---c---cccCCCeEEEEcCccc---cC-CC
Confidence 55432 123321 1 237899999999999999999544 3 4789999999999883 32 23
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc-----------------------cccCC
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM-----------------------SSFTL 309 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~-----------------------~~~~~ 309 (442)
..+.. -+ +++.|..|.+|.+|- ++.++++++.+ +.++.. .+++.
T Consensus 171 idv~~--~D---------~~~~s~~K~lg~~~G-l~~~~~s~~~~-~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~t 237 (361)
T TIGR01366 171 VDIAE--TD---------VYYFAPQKNFASDGG-LWLAIMSPAAL-ERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNT 237 (361)
T ss_pred CCHHH--CC---------EEEEEchhhcCCCCc-eEEEEECHHHH-hhhhcccCCCCCCchhhhHHHHHhccccCCCCCC
Confidence 34433 12 577899999987752 56656644333 222210 11122
Q ss_pred CcHHHHHHHHHHhcCchhHHHH--HHHHHHHHHHHHHHHHHHHHhCC-Ceeec-CC---ceEEEEEecCCcccccChhhH
Q 046900 310 ISSQTQYLLASMLSNKKFTENY--IKTNRERLQKRYQMIIEGLRSAG-IECLK-GN---AGLFCWMNLSPLLEEQTREGE 382 (442)
Q Consensus 310 ~s~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-~~---~g~~~~~~~~~~~~~~~~~~~ 382 (442)
.+.....++.++++ ++.+. ++...++.++..+++.+.+.+.+ ++... .. ......+.+++.. +.
T Consensus 238 p~i~~i~~l~~al~---~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g~------~~ 308 (361)
T TIGR01366 238 PAIATLALLAEQID---WMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDDI------DA 308 (361)
T ss_pred chHHHHHHHHHHHH---HHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCcc------CH
Confidence 22222223333333 22221 45556777888888999998875 44432 11 1111223333322 25
Q ss_pred HHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 383 LALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 383 ~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
.++.+.|.++ ||.+.+|... ...+.+|+|+. ..+.++++++++.|++++++
T Consensus 309 ~~v~~~L~~~-gI~i~~~~~~--l~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 309 ATVAKILRAN-GIVDTEPYRK--LGRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred HHHHHHHHHC-CCeeccCccc--cCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 6677777555 9999876422 23468999986 33899999999999998765
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-11 Score=121.43 Aligned_cols=316 Identities=12% Similarity=0.072 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHHhCCCCccCC--CcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcC-------
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDL--NRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTG------- 166 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~--~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G------- 166 (442)
.+.+..+|+.+.+.... ... ..+++++++++|++.+++... ...+.|+...-+|.+....+....|
T Consensus 100 ~~~~~~lAe~L~~~~p~---~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~ 176 (459)
T PRK06931 100 TPLKDAFSEYLLSLLPG---QGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNA 176 (459)
T ss_pred CHHHHHHHHHHHHhCCC---ccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccC
Confidence 46666777777654210 011 124666899999998877542 2346788888888776543321111
Q ss_pred -----cEEEEEecCCCC--CCc----CCHHHHHHHHHHHHh----cCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHH
Q 046900 167 -----IKIVPIHCDSSN--NFQ----ITPQALEAAYKEAES----KDMRVRGVLITNPSNPLGATI-QRSVLEELLDFAT 230 (442)
Q Consensus 167 -----~~v~~v~~~~~~--~~~----~d~~~l~~~l~~~~~----~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~ 230 (442)
..+..+|..... .|. -+.+.+++.+.+... ...++.++++..-..-.|.+. +.+-++++.++|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~ 256 (459)
T PRK06931 177 VNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQ 256 (459)
T ss_pred CCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHH
Confidence 112223221110 011 123444333332221 123455555543344456654 6677999999999
Q ss_pred hcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccC
Q 046900 231 RKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFT 308 (442)
Q Consensus 231 ~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~ 308 (442)
+||+++|.||+...+...|..+ ....+. ..+. +-+++|.+| .|+.+|.+++. +.+ +.+.. ....+
T Consensus 257 ~~g~LlI~DEV~tGfGRtG~~~-a~~~~g------v~PD---ivt~gK~l~-gG~Pi~av~~~-~~~-~~~~~~~~~~T~ 323 (459)
T PRK06931 257 KHGILLIVDEVQAGFARTGKMF-AFEHAG------IEPD---IIVMSKAVG-GGLPLAVLGIK-KEF-DAWQPGGHTGTF 323 (459)
T ss_pred HcCCEEEEecchhcCCcCchHH-HhhhcC------CCCC---EEEeccccc-CCcceeeeeeH-HHH-hhccCCCCCCCC
Confidence 9999999999998765444311 111111 1122 346799998 88999988874 444 33321 22234
Q ss_pred CCcHHHHHHHHHHhcC---chhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccc--------c
Q 046900 309 LISSQTQYLLASMLSN---KKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEE--------Q 377 (442)
Q Consensus 309 ~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~--------~ 377 (442)
..++++.+++.+.|+. .+. .++.+++-+.+++.. .+...++++......-|+++.+++...... .
T Consensus 324 ~gnpla~aaala~L~~l~~~~l-~~~~~~~G~~l~~~L---~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~ 399 (459)
T PRK06931 324 RGNQLAMATGLTTLKILKEENL-AQNAAERGEWLKAQL---AELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPA 399 (459)
T ss_pred CCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHH---HHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCc
Confidence 5677777766666652 221 222333333332222 222223343223334566777776421100 0
Q ss_pred ChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 378 TREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 378 ~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
...-...+...++++ ||++.++..+ ...+|+..+ .++++++++++++|.+++.+.-
T Consensus 400 ~~~~~~~~~~~~~~~-Gvl~~~~~~~----~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~ 456 (459)
T PRK06931 400 DGELAAAIQKACFEN-GLLLERGGRN----GNVVRLLPPLLITQAECEEFIDRFEQALLAAV 456 (459)
T ss_pred cHHHHHHHHHHHHHC-CcEEeecCCC----CCEEEEECCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 111245677777766 9999874321 356888776 4499999999999999998754
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7e-11 Score=106.08 Aligned_cols=281 Identities=16% Similarity=0.188 Sum_probs=189.4
Q ss_pred EEEecChHHHHHHHHHhhcCCCCeEEEcCCC-CcC-hHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCc
Q 046900 123 IVVTAGATAANELLTFILADPGDALLVPTPY-YPG-FDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMR 200 (442)
Q Consensus 123 i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~-y~~-~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 200 (442)
.++...++.+++.++..++.|||.|++-.-+ |.. +.+..+ +.|++|..++.+. +-...++.+.+.+.++ +
T Consensus 71 f~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~-r~ga~V~~v~~~~--G~~~~le~i~~~lsqh-----~ 142 (385)
T KOG2862|consen 71 FVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCAR-RYGAEVDVVEADI--GQAVPLEEITEKLSQH-----K 142 (385)
T ss_pred EEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHH-hhCceeeEEecCc--ccCccHHHHHHHHHhc-----C
Confidence 4555558889999999999999999976654 443 345555 6999999998775 4458899999999874 8
Q ss_pred eeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccC
Q 046900 201 VRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDL 280 (442)
Q Consensus 201 ~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~ 280 (442)
+++++++.-...||+.-+ -+..+-++|++|++++++|.+-+ .++.+|. ++. .+.-+....--|++
T Consensus 143 p~~vfv~hgdsSTgV~q~--~~~~~g~lc~k~~~lllVD~VaS---lggt~F~----mDe------wgVDvaytgSQKaL 207 (385)
T KOG2862|consen 143 PKAVFVTHGDSSTGVLQD--LLAISGELCHKHEALLLVDTVAS---LGGTEFE----MDE------WGVDVAYTGSQKAL 207 (385)
T ss_pred CceEEEEecCccccccch--HHHHHHHHhhcCCeEEEEechhh---cCCccce----ehh------hcccEEEecchhhc
Confidence 899999998899999865 24455677889999999999977 3444331 222 23334445556888
Q ss_pred CCCCceeEEEeecCHHHHHHHHHc--------------cccCC-----------CcHHHHHHHHHHhcCchhHHHHHHHH
Q 046900 281 GLPGFRVGTIYSYNDKVVTTARRM--------------SSFTL-----------ISSQTQYLLASMLSNKKFTENYIKTN 335 (442)
Q Consensus 281 g~~G~RiG~i~~~~~~~~~~~~~~--------------~~~~~-----------~s~~~q~~~~~~l~~~~~~~~~~~~~ 335 (442)
|.|. .++-+.. .+...+.++.. ..+|. .+....+.+.++|+. ..++-+++.
T Consensus 208 ~aP~-GLsiisf-S~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~--I~eeGL~~~ 283 (385)
T KOG2862|consen 208 GAPA-GLSIISF-SDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALAL--IAEEGLENS 283 (385)
T ss_pred CCCC-Ccceeec-CHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHH--HHHHHHHHH
Confidence 7442 3455655 44444444431 12222 233444555555553 335567778
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeecC----CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEE
Q 046900 336 RERLQKRYQMIIEGLRSAGIECLKG----NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWF 411 (442)
Q Consensus 336 ~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~i 411 (442)
.++-++..+++...|+++|++.... .-...-.+.+|... |..+++.++..++++.+.-|- +...+..+
T Consensus 284 ~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gv------Dw~dVv~~~~~~~~vei~ggl--g~~~gKv~ 355 (385)
T KOG2862|consen 284 WRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGV------DWKDVVAYAMSHYVVEIGGGL--GPTVGKVF 355 (385)
T ss_pred HHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCC------CHHHHHHHHHHhcCEEecccc--CCCcccEE
Confidence 8888888999999999988775431 11112234556544 367888888899788776543 33345789
Q ss_pred EEEee--cCCHHHHHHHHHHHHHHHHHHH
Q 046900 412 RVCFA--NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 412 Rls~~--~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
||++- +.+.|.++..++.|+..+.+.+
T Consensus 356 RIGl~gcna~~e~i~~v~~ll~~alq~~~ 384 (385)
T KOG2862|consen 356 RIGLLGCNANVEYIDNVVELLKLALQRKK 384 (385)
T ss_pred EEEEeeccCCcHHHHHHHHHHHHHHhhcc
Confidence 99873 3477889999999998887643
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-12 Score=130.00 Aligned_cols=160 Identities=20% Similarity=0.249 Sum_probs=112.4
Q ss_pred CCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh-HhhhcCcEEEEEecCCCCCCc----CCH-----HHHHH
Q 046900 120 LNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD-LRWRTGIKIVPIHCDSSNNFQ----ITP-----QALEA 189 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~-~~~~~G~~v~~v~~~~~~~~~----~d~-----~~l~~ 189 (442)
...-+++||+|.++..++.+++.+||.||++..||-+.... +.+ .|+.+++++... +.|+ +++ +.+++
T Consensus 190 d~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiL-sGa~PVYl~P~~-n~~Gi~g~I~~~~~~~~~i~~ 267 (720)
T PRK13578 190 DKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQ-AGATPVYLETAR-NPFGFIGGIDAHCFDEEYLRE 267 (720)
T ss_pred CceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHH-cCCeEEEeeccc-cccCCcCCCChHHccHHHHHH
Confidence 35689999999999999999999999999999999998875 664 899999987554 2343 344 45888
Q ss_pred HHHHHH-h--cC-CceeEEEEeCCCCCCCcCCCHHHHHHHHHH-HHhcCcEEEEeccCCcCC-CCCC--Ccc-cHHHHHh
Q 046900 190 AYKEAE-S--KD-MRVRGVLITNPSNPLGATIQRSVLEELLDF-ATRKNIHLVSDEIYSGSA-FSSS--EFV-SIAEILE 260 (442)
Q Consensus 190 ~l~~~~-~--~~-~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~-~~~~~~~vi~De~y~~~~-~~~~--~~~-s~~~~~~ 260 (442)
+++++. + .. ...+++++++|+. .|.+++ +++|++. ++.++ .|++||+|+... |... .++ +..+...
T Consensus 268 ~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~Ga 342 (720)
T PRK13578 268 QIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNE 342 (720)
T ss_pred HHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCC
Confidence 887651 1 01 1258899999887 699988 6777777 56667 899999998532 3221 011 1122222
Q ss_pred hhcCCCCCcEEEEecCcccCCCCCce-eEEEeec
Q 046900 261 ARQYKDSERVHIVYSLSKDLGLPGFR-VGTIYSY 293 (442)
Q Consensus 261 ~~~~~~~~~vi~~~S~SK~~g~~G~R-iG~i~~~ 293 (442)
+ ...++++.|.+|.+ +++- .+++...
T Consensus 343 D-----~p~i~v~QStHKtL--~alTQaS~LHvk 369 (720)
T PRK13578 343 N-----DPGIFVTQSVHKQQ--AGFSQTSQIHKK 369 (720)
T ss_pred C-----CCCeEEEEChhhcc--hhhhhHhhhhcC
Confidence 1 24578899999987 4443 3456553
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.2e-13 Score=125.26 Aligned_cols=298 Identities=18% Similarity=0.187 Sum_probs=192.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS 176 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~ 176 (442)
+.++.+.+|+|++ .++-+++..| -......+.+|+.||.-|+-..-.+..+...+++ .|+.+..+..+
T Consensus 184 hkelE~l~A~f~g---------~e~a~vF~mG-f~TNs~~~p~l~~~gsLIiSDelNHaSi~~GaRL-SgAtiRVfkHN- 251 (519)
T KOG1357|consen 184 HKELEELVARFLG---------VEDAIVFSMG-FATNSMNIPSLLGKGSLIISDELNHASLITGARL-SGATTRVFRHN- 251 (519)
T ss_pred HHHHHHHHHHhcC---------CcceEEEecc-ccccccCcceeecCCcceeeccccchheeccccc-cCceEEEEecC-
Confidence 4566777777765 3566777777 5556677788999999999999999999988886 89988877654
Q ss_pred CCCCcCCHHHHHHHHHHHHhcC----C-ceeEEEEe--CCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC
Q 046900 177 SNNFQITPQALEAAYKEAESKD----M-RVRGVLIT--NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS 249 (442)
Q Consensus 177 ~~~~~~d~~~l~~~l~~~~~~~----~-~~~~v~l~--~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~ 249 (442)
|+..||+.|++.-..+ + ..|.++++ .-...-|.+.. +.+++.+++++..+++.||+++-...+.
T Consensus 252 ------dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~---Lp~vvalkkkykayl~lDEAHSiGA~g~ 322 (519)
T KOG1357|consen 252 ------DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD---LPEVVALKKKYKAYLYLDEAHSIGAMGA 322 (519)
T ss_pred ------CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc---cHHHHHhhccccEEEEeeccccccccCC
Confidence 6788999888764322 1 22333333 22346666655 7888999999999999999999655431
Q ss_pred CCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc-----CCCcHHHHHHHHHH--h
Q 046900 250 SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF-----TLISSQTQYLLASM--L 322 (442)
Q Consensus 250 ~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~-----~~~s~~~q~~~~~~--l 322 (442)
. -..+..+. +.+..+..|.+++|.|.||.+| ||+.+ ++.+.+.++..... ...++++|.....+ +
T Consensus 323 t-Grgvce~~---g~d~~dvDImMGtftKSfga~G---Gyiag-sk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i 394 (519)
T KOG1357|consen 323 T-GRGVCEYF---GVDPEDVDIMMGTFTKSFGAAG---GYIAG-SKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHI 394 (519)
T ss_pred C-Ccceeecc---CCCchhheeecceehhhccccc---ceecC-cHHHHhhhccCCCceeecccCChHHHHHHHHHHHhh
Confidence 1 11111111 1122356678899999999777 89888 66777776653322 22234555554333 2
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEe--cCCcccccChhhHHHHHHHHHHcCcEEEeCC
Q 046900 323 SNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMN--LSPLLEEQTREGELALWDSMLHEVKLNISPG 400 (442)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg 400 (442)
...+. .+..++..+++++++.++...|++.|+-+...+....+-+- .+.- -..+-++|+++ +|.+.-+
T Consensus 395 ~G~dg-t~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~~dSpVvplll~~~~k--------~~~f~r~~l~~-nigvVvv 464 (519)
T KOG1357|consen 395 MGEDG-TNRGRQKIERLAENSRYFRWELQKMGFIVYGNNDSPVVPLLLYGPAK--------IVAFSREMLER-NIGVVVV 464 (519)
T ss_pred cCCCc-ccHHHHHHHHHHhhhHHHHHhhhcCcEEEecCCCCCcceeeecCccc--------ccHHHHHHHhc-CceEEEE
Confidence 21111 23356677889999999999999988887765544222221 1211 23455677776 6665533
Q ss_pred CCCCC--CCCCEEEEEee-cCCHHHHHHHHHHHHHHH
Q 046900 401 SSCHC--SEPGWFRVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 401 ~~f~~--~~~~~iRls~~-~~~~e~i~~~l~~l~~~l 434 (442)
. |.. -..+.+|++.+ ..+.|+++++++.+.++-
T Consensus 465 g-fPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g 500 (519)
T KOG1357|consen 465 G-FPATPLLESRARFCLSASHTKEDLDRALEVIDRVG 500 (519)
T ss_pred e-CCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhc
Confidence 2 332 12356788776 337899999998887654
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-11 Score=126.72 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCC
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSS 177 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~ 177 (442)
.+..+..|+.++ ....-+++||+|.++..++.+++.+||.|+++..||-+...++.+ .|+.+++++...
T Consensus 198 ~eAe~~AA~~fg---------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLil-sga~PVYl~P~r- 266 (714)
T PRK15400 198 KEAEEYIARVFN---------ADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMM-SDVTPIYFRPTR- 266 (714)
T ss_pred HHHHHHHHHHhC---------CCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHH-cCCeEEEecccc-
Confidence 444455555543 234689999999999999999999999999999999998888885 999999987543
Q ss_pred CCCc----CC-----HHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC-C
Q 046900 178 NNFQ----IT-----PQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA-F 247 (442)
Q Consensus 178 ~~~~----~d-----~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~-~ 247 (442)
+.|+ ++ .+.+++.+++.... .+++++++++|+. .|.+++ +++|++.|..++ |++||+|+... |
T Consensus 267 n~~Gi~g~I~~~~~~~e~i~~~i~~~p~a-k~p~~~vit~pTY-dG~~yd---~~~I~~~~~~~~--ilvDEAwgah~~F 339 (714)
T PRK15400 267 NAYGILGGIPQSEFQHATIAKRVKETPNA-TWPVHAVITNSTY-DGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTNF 339 (714)
T ss_pred cccCCccCCCccccCHHHHHHHHHhCccc-cCccEEEEECCCC-ccEecC---HHHHHHHhCCCC--EEEEccchhhhcc
Confidence 2332 34 78999999865321 2334789998865 799998 566777776776 68999998632 3
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV 287 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri 287 (442)
.. .+.....+... .+..+.++++.|.+|.+ +|+.-
T Consensus 340 ~p-~~~~~sam~~g--a~~~~~i~vtQStHKtL--~alTQ 374 (714)
T PRK15400 340 SP-IYEGKCGMSGG--RVEGKVIYETQSTHKLL--AAFSQ 374 (714)
T ss_pred Cc-ccCCcChhhcC--CCCCCceEEEEchhhcc--cchhH
Confidence 22 12111112110 01125568899999987 44433
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-11 Score=119.43 Aligned_cols=335 Identities=12% Similarity=0.164 Sum_probs=172.7
Q ss_pred CCCCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|..+.....+||+..+. ..+ ..+.+.+.+.+..+. ...|.. ....+-.+|+.+.+...
T Consensus 40 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~------------~~~~~~---~~~~~~~la~~l~~~~p-- 102 (431)
T PRK06209 40 AHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQD------------GCNFTR---PSAIELDAAESFLELID-- 102 (431)
T ss_pred CEEEeCCCCEEEEccccccchhcCCCCHHHHHHHHHHHHh------------CcCCCC---CCHHHHHHHHHHHHhCC--
Confidence 344445567788887543 233 235555555544321 111221 12333345555554321
Q ss_pred CccCCCcEEEecChHHHHHHHHHhhcC-CC-CeEEEc-CCCCcChHHhH----hhhcCc------EEEEEecCCCCCCcC
Q 046900 116 AKFDLNRIVVTAGATAANELLTFILAD-PG-DALLVP-TPYYPGFDRDL----RWRTGI------KIVPIHCDSSNNFQI 182 (442)
Q Consensus 116 ~~~~~~~i~~t~G~~~ai~~~~~~l~~-~g-d~Vl~~-~p~y~~~~~~~----~~~~G~------~v~~v~~~~~~~~~~ 182 (442)
..+.+++++++++|++.+++.... .| ..|+.. .-+|..+.... ....|. .+..++ + -
T Consensus 103 ---~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~-~ 172 (431)
T PRK06209 103 ---GADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFR------Y-N 172 (431)
T ss_pred ---ccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccC------C-C
Confidence 136899999999999998875421 23 345443 22222211100 000111 011111 1 2
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhh
Q 046900 183 TPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEAR 262 (442)
Q Consensus 183 d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~ 262 (442)
|++.+++.+++. ..++.+ ++.-|- .|...+.+.+++|.++|++||+++|+||++..+.+.+ ........
T Consensus 173 d~~~l~~~l~~~---~~~~aa-vi~Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~---~g~~~~~g-- 241 (431)
T PRK06209 173 DIASLEALFEDH---PGRIAC-VILEPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHM---RGAQKLYG-- 241 (431)
T ss_pred CHHHHHHHHHhC---CCCEEE-EEEccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc---chhhHHhC--
Confidence 789999988642 224444 444553 2346678889999999999999999999987654321 11111110
Q ss_pred cCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHH--HHH--------ccccCCCcHHHHHHHHHHhcCchhHHHHH
Q 046900 263 QYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT--ARR--------MSSFTLISSQTQYLLASMLSNKKFTENYI 332 (442)
Q Consensus 263 ~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~--~~~--------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~ 332 (442)
. .++ +.+++|++| .|+.+|++++ ++.+.+. +.. ..+.+..++++..++.+.|+.. ++
T Consensus 242 -v-~PD----i~t~gK~lg-gG~p~~av~~-~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i---~~-- 308 (431)
T PRK06209 242 -I-VPD----LSCFGKALG-NGFAVSALAG-KREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIY---RD-- 308 (431)
T ss_pred -C-Ccc----eeeehhhhc-CCcccEEEEE-HHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHH---hc--
Confidence 0 112 367899998 7899999999 5566654 211 1112333445544444444321 11
Q ss_pred HHHHHHHHHHHHHHHHHH----HhCCCeeec-CCceEEEEEecCCcc-cccChhhHHHHHHHHHHcCcEEEeCCCCCCCC
Q 046900 333 KTNRERLQKRYQMIIEGL----RSAGIECLK-GNAGLFCWMNLSPLL-EEQTREGELALWDSMLHEVKLNISPGSSCHCS 406 (442)
Q Consensus 333 ~~~~~~~~~~~~~l~~~L----~~~g~~~~~-~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~ 406 (442)
....+.++++-+++.+.| .++++.... ..|.+....-+.... ......-...+...++++ ||.+.|
T Consensus 309 ~~~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~p~------- 380 (431)
T PRK06209 309 EDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRR-GVLMPS------- 380 (431)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHC-Cccccc-------
Confidence 012223333333333433 334544221 122222222111110 001111123667777776 997622
Q ss_pred CCCEEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 407 EPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 407 ~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
++|+... +++++++++++|.+++...+
T Consensus 381 ----l~is~~h-t~~dId~~l~~l~~~l~~~~ 407 (431)
T PRK06209 381 ----LVVSYAH-GDADIERTIDAVHGALGVYR 407 (431)
T ss_pred ----ccccccC-CHHHHHHHHHHHHHHHHHHH
Confidence 5677555 89999999999999998764
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.4e-11 Score=121.34 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=108.9
Q ss_pred CCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCc----CCH-----HHHHHH
Q 046900 120 LNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQ----ITP-----QALEAA 190 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~----~d~-----~~l~~~ 190 (442)
...-+++||+|.++..++.+++.+||.|+++..||-+...++.+ .|+.+++++... +.|+ +++ +.+++.
T Consensus 211 d~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLil-sga~PVYl~P~~-n~~Gi~g~I~~~~~~~e~I~~~ 288 (713)
T PRK15399 211 EQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMM-SDVVPIWLKPTR-NALGILGGIPRREFTRDSIEEK 288 (713)
T ss_pred CcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHH-cCCeeEEecccc-cccCCcCCCChhhccHHHHHHH
Confidence 34689999999999999999999999999999999998888885 999999987543 2333 344 889999
Q ss_pred HHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEE-EEeccCCcCC-CCCCCcccHHHHHhhhcCCCCC
Q 046900 191 YKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHL-VSDEIYSGSA-FSSSEFVSIAEILEARQYKDSE 268 (442)
Q Consensus 191 l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~v-i~De~y~~~~-~~~~~~~s~~~~~~~~~~~~~~ 268 (442)
+++... ..+++++++++|+. .|.+++ +++|++.| ++.+ ++||+|+... |.. .+.+...+... .....
T Consensus 289 i~~~p~-~~~p~~vvit~pTY-dGi~yd---~~~I~~~~---g~~~ilvDEAhgah~~F~p-~~~~~sam~~~--~~aD~ 357 (713)
T PRK15399 289 VAATTQ-AQWPVHAVITNSTY-DGLLYN---TDWIKQTL---DVPSIHFDSAWVPYTHFHP-IYQGKSGMSGE--RVPGK 357 (713)
T ss_pred HHhCCC-cCCceEEEEECCCC-CceeeC---HHHHHHHh---CCCEEEEeccchhhhhcCc-ccCCcChhhCC--CCCCe
Confidence 987532 12457899999965 799998 55566666 4555 6999998632 322 12211122110 00123
Q ss_pred cEEEEecCcccCCCCCce-eEEEee
Q 046900 269 RVHIVYSLSKDLGLPGFR-VGTIYS 292 (442)
Q Consensus 269 ~vi~~~S~SK~~g~~G~R-iG~i~~ 292 (442)
.++++.|.+|.+ +|+. .+++..
T Consensus 358 ~i~~tQStHKtL--~alTQaS~iHv 380 (713)
T PRK15399 358 VIFETQSTHKML--AAFSQASLIHI 380 (713)
T ss_pred eeeeeeehhccc--cccchheeeee
Confidence 345588999987 4443 456655
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-10 Score=110.20 Aligned_cols=295 Identities=13% Similarity=0.108 Sum_probs=179.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc-CCCCeEEEcCCCCcCh-H-HhHhhhcCc-EEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA-DPGDALLVPTPYYPGF-D-RDLRWRTGI-KIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~-~~gd~Vl~~~p~y~~~-~-~~~~~~~G~-~v~~v 172 (442)
..++-+.+.+.+.+.++ .+.+.+-++++.|+|.+++.++..|+ ++|+.|++.. .|..- . +.++ +.|+ ++..+
T Consensus 37 F~~i~~e~~~~L~~l~~--~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~r~~~eia~-~~g~~~v~~l 112 (374)
T TIGR01365 37 GKEKLAEAIKKTREMLG--VPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGKGWVTDVTK-QLKLPDVRVL 112 (374)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHHHHHHHHHH-hcCCCCcEEE
Confidence 35666666666666654 11112235668889999999999998 5898898865 45443 4 5666 4888 46666
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
..+. +-.+|+++++. + +.|+++..-..||+..+. ++++..+ ++.++|+|.+-+ +++.++
T Consensus 113 ~~~~--g~~~~~~~ve~----------~-~~v~~vhnETSTGv~npv---~~i~~~~--~~~lliVDavSs---~g~~~l 171 (374)
T TIGR01365 113 EAEY--GKLPDLKKVDF----------K-NDVVFTWNGTTSGVRVPN---GDFIPAD--REGLTICDATSA---AFAQDL 171 (374)
T ss_pred cCCC--CCCCCHHHcCC----------C-CCEEEecCCCchheeccc---ccccccc--CCCcEEEEccch---hcCCCC
Confidence 5433 33578888872 1 125677777789999985 3433211 488999999987 444332
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc----------------------cccCCC
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM----------------------SSFTLI 310 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~----------------------~~~~~~ 310 (442)
.+..+ -+++.|.-|.+++|+ .+|+++++++.+.+ .+.. ......
T Consensus 172 -~~d~i-----------Dv~~tgsQK~L~~pp-Gls~v~vs~~Al~~-~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~ 237 (374)
T TIGR01365 172 -DYHKL-----------DVVTFSWQKVLGGEG-AHGMLILSPRAVAR-LESYTPAWPLPKIFRLTKGGKLNKKIFEGSTI 237 (374)
T ss_pred -ChhHC-----------cEEEEechhccCCCC-ceEEEEECHHHHHH-HhhcCCCCCChhhhccccccchhhhhhcCCCC
Confidence 33221 266788899998665 36788885444432 2210 001112
Q ss_pred cHHHHHHHHHHhcCchhHHH--HHHHHHHHHHHHHHHHHHHHHhCC-CeeecC----CceEEEEEecCCc-cc----ccC
Q 046900 311 SSQTQYLLASMLSNKKFTEN--YIKTNRERLQKRYQMIIEGLRSAG-IECLKG----NAGLFCWMNLSPL-LE----EQT 378 (442)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~----~~g~~~~~~~~~~-~~----~~~ 378 (442)
+++...++.+++....++.+ -++...++.+++.+.+.+.+++.| +..... .+.....+.++.. .+ ...
T Consensus 238 ~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~ 317 (374)
T TIGR01365 238 NTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQ 317 (374)
T ss_pred CChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchh
Confidence 23333333333332223222 267788888999999999999998 665542 2333344555332 10 001
Q ss_pred hhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEe-ecCCHHHHHHHHHHHHHH
Q 046900 379 REGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCF-ANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 379 ~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~-~~~~~e~i~~~l~~l~~~ 433 (442)
.+-..++.+.|.++ ||.+.+|..- .....|||+. +.++.++++.+++.|.=+
T Consensus 318 ~~~~~~~~~~l~~~-gi~i~~G~~~--~~~~~fRIg~~G~i~~~di~~l~~~l~~~ 370 (374)
T TIGR01365 318 ADFAKELISTLEKE-GVAYDIGSYR--DAPSGLRIWCGATVEKSDLECLCPWLDWA 370 (374)
T ss_pred hHHHHHHHHHHHHC-CEEEeccccc--cCCCceEEecCCcCCHHHHHHHHHHHHHH
Confidence 11145677777666 9999987642 2346799975 567899999999888644
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.2e-12 Score=117.15 Aligned_cols=320 Identities=15% Similarity=0.150 Sum_probs=193.6
Q ss_pred CCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH
Q 046900 80 KGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR 159 (442)
Q Consensus 80 ~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~ 159 (442)
+|+..+....-|+...=+.+|.+.||+|++ ..+.|+...| -.++..++.+++++||.|.+..-.......
T Consensus 124 yGvGsCGPrGFYGt~DvHldlE~~iakF~G---------~E~aivYs~g-F~ti~S~ipafsKrGDIi~~de~~nfaIq~ 193 (467)
T KOG1358|consen 124 YGVGSCGPRGFYGTIDVHLDLEKRIAKFMG---------TEDAIVYSYG-FSTIESAIPAFSKRGDIIFVDEAVNFAIQK 193 (467)
T ss_pred hCCCCcCCCcccccceeecccHHHHHHhhC---------Ccceeeeccc-cchhhhcchhhhccCcEEEEehhhhHHHHH
Confidence 566677777778887777899999999987 3455666555 556777889999999999998887777777
Q ss_pred hHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHH---hcCC---ceeEEEEe-CCCCCCCcCCCHHHHHHHHHHHHhc
Q 046900 160 DLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAE---SKDM---RVRGVLIT-NPSNPLGATIQRSVLEELLDFATRK 232 (442)
Q Consensus 160 ~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~---~~~~v~l~-~P~NPtG~~~~~~~l~~l~~~~~~~ 232 (442)
.++. ..-.++++.. .|++.++..+.+-. .+.+ .++..++. --.-+||.+.+ +.+|+++..+|
T Consensus 194 Glql-SRS~i~~Fkh-------ndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p---l~~iv~lk~Ky 262 (467)
T KOG1358|consen 194 GLQL-SRSTISYFKH-------NDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP---LPEIVKLKNKY 262 (467)
T ss_pred HHhh-hhheeEEecC-------CCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc---cHHHHHHHhhh
Confidence 7664 5556666653 36677776664311 1111 22333333 33567999999 77778888899
Q ss_pred CcEEEEeccCCcCCCCC--CCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc---
Q 046900 233 NIHLVSDEIYSGSAFSS--SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--- 307 (442)
Q Consensus 233 ~~~vi~De~y~~~~~~~--~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--- 307 (442)
...||.||.|+..+.+. .......... ..+.-++++|++-+++..| ||+++ +..+... +++...
T Consensus 263 k~RvildEs~SfG~lg~~GrGvteH~~v~------~~~iDiv~~sm~~alas~G---gFc~G-~~~i~~h-QrLSg~~Y~ 331 (467)
T KOG1358|consen 263 KFRVILDESLSFGVLGKTGRGVTEHFGVP------ITDIDIVTASMETALASGG---GFCAG-KSFIADH-QRLSGSGYC 331 (467)
T ss_pred eEEEEEecccccccccccCccccccCCCC------ccceeeeeecccccccccC---ceeec-ceeeEee-eecccccee
Confidence 99999999998554432 2111111111 1244577899999887666 88877 4443332 232222
Q ss_pred CC--CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEEEEecCCccccc--ChhhH
Q 046900 308 TL--ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSPLLEEQ--TREGE 382 (442)
Q Consensus 308 ~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~--~~~~~ 382 (442)
+. .++....++...+.-.++ -..+.+.++..-..+...|... ++.+....-+..+.+.+....... ...--
T Consensus 332 fSAslPp~la~aa~~ai~i~~~----~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL 407 (467)
T KOG1358|consen 332 FSASLPPYLAGAAIKAILIEEW----NPEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHLQLERSYGSREKEEKLL 407 (467)
T ss_pred eeccCchhhhhhHHHHHHHHhh----CcchhhhhhccccccchhhhcCCceEEecCcCCceeeeeecccccchHHHHHHH
Confidence 11 122233333333332222 2334445555556666777654 566655444445555554422111 11123
Q ss_pred HHHHHHHHHcCcEEEeCCCCCCC----CCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 383 LALWDSMLHEVKLNISPGSSCHC----SEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 383 ~~l~~~l~~~~gi~v~pg~~f~~----~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
.++++..+.+ |+++.-...--. .-+..+||++. .+++|+++++.+.|+++...
T Consensus 408 ~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 408 EEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVASA 465 (467)
T ss_pred HHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 5566666677 887764332211 11235999996 45999999999999987654
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8e-10 Score=110.10 Aligned_cols=281 Identities=13% Similarity=0.146 Sum_probs=155.2
Q ss_pred CCcEEEecChHHHHHHHHHhhcC--------C------CCeEEEcCCCCcChHHhHhhhcCcEEE-----------EEec
Q 046900 120 LNRIVVTAGATAANELLTFILAD--------P------GDALLVPTPYYPGFDRDLRWRTGIKIV-----------PIHC 174 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~--------~------gd~Vl~~~p~y~~~~~~~~~~~G~~v~-----------~v~~ 174 (442)
.+.|+++++++++++.+++.... . ..+|+...-+|.+....+....|.... .++.
T Consensus 110 ~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~ 189 (443)
T PRK08297 110 LPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDN 189 (443)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCC
Confidence 36899999999999999876520 1 257888888887765433211221100 0110
Q ss_pred CCCC-CC---c---C------CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcC-CCHHHHHHHHHHHHhcCcEEEEec
Q 046900 175 DSSN-NF---Q---I------TPQALEAAYKEAESKDMRVRGVLITNPSNPLGAT-IQRSVLEELLDFATRKNIHLVSDE 240 (442)
Q Consensus 175 ~~~~-~~---~---~------d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De 240 (442)
.... .+ . . +++.+++.+.+ ...++.++++..-....|.+ .+.+-+++|.++|++||+++|.||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DE 266 (443)
T PRK08297 190 PKLRFPLPGEDLEEVEALEAEALAQARAAFER---HPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDE 266 (443)
T ss_pred CCCCCCCcccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 0000 00 0 0 23444555543 23456665555334445654 677779999999999999999999
Q ss_pred cCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHH-------HccccCCCcHH
Q 046900 241 IYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTAR-------RMSSFTLISSQ 313 (442)
Q Consensus 241 ~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~-------~~~~~~~~s~~ 313 (442)
++..+...|..+ ....+. ....++ +|+|.++ .| |.+.. + .+...+. ...+.+..+++
T Consensus 267 V~tGfGRtG~~~-a~~~~g------v~PDiv---~~gK~l~-~~---a~l~~-~-~i~~~~~~~~~~~~~~~~T~~gnpl 330 (443)
T PRK08297 267 VQTGVGLTGTAW-AYQQLG------VRPDIV---AFGKKTQ-VC---GIMAG-R-RVDEVEDNVFAVSSRINSTWGGNLV 330 (443)
T ss_pred hhhccCccchHH-HHHhcC------CCCCEE---Eeccccc-cc---ceecc-h-HHHHhhhhhccCccccCCCCCccHH
Confidence 998765444321 111111 012222 5799874 22 44443 3 2222211 12223445777
Q ss_pred HHHHHHHHhcC---chhHHHHHHHHHHHHHHHHHHHHHHHHhCC-Ce-eecCCceEEEEEecCCcccccChhhHHHHHHH
Q 046900 314 TQYLLASMLSN---KKFTENYIKTNRERLQKRYQMIIEGLRSAG-IE-CLKGNAGLFCWMNLSPLLEEQTREGELALWDS 388 (442)
Q Consensus 314 ~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (442)
+..++.+.|+- .+. .+...++-+.+++. +.+...+.. +. .... -|+++.++++.. .....++..
T Consensus 331 ~~aaa~a~L~~l~~~~l-~~~~~~~g~~l~~~---L~~l~~~~~~~~~~vrg-~G~~~~i~~~~~------~~~~~~~~~ 399 (443)
T PRK08297 331 DMVRARRILEVIEEDGL-VENAARQGEYLLAR---LEELAAEFPAVVSNVRG-RGLMCAFDLPTT------ADRDEVIRR 399 (443)
T ss_pred HHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHH---HHHHHHHCCCcceeeec-cceEEEEEecCH------HHHHHHHHH
Confidence 77766666652 221 12222222333222 222222232 21 2223 366777887542 124578888
Q ss_pred HHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 389 MLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 389 l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
++++ ||++.|+. ...+|++.+ .++++++++++++|.+++.++
T Consensus 400 l~~~-Gvl~~~~~------~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 400 LWEE-GVLVLPCG------ERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred HHHC-CEEEecCC------CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 8766 99998742 245888654 348999999999999998754
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-10 Score=112.38 Aligned_cols=258 Identities=19% Similarity=0.202 Sum_probs=161.9
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCCcc---CCCcEEEecChHHHHHHHHHhhcC--------CC-----C-eEEEcCCC
Q 046900 91 FQDYHGLKSFRQAMASFMEQIRGGRAKF---DLNRIVVTAGATAANELLTFILAD--------PG-----D-ALLVPTPY 153 (442)
Q Consensus 91 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~---~~~~i~~t~G~~~ai~~~~~~l~~--------~g-----d-~Vl~~~p~ 153 (442)
|.......++.+.+.+|+.+.+|.+... ....-++|+|+++++..++.+..+ .| . .|++.+-+
T Consensus 71 ~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a 150 (373)
T PF00282_consen 71 WEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA 150 (373)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS
T ss_pred cccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc
Confidence 4344567899999999999988743111 124688999999999877644321 12 2 46666768
Q ss_pred CcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcC
Q 046900 154 YPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKN 233 (442)
Q Consensus 154 y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~ 233 (442)
|..+..++.. +|+.++.||+++ ++.+|+++|++.+.+...+|..+-+|+.+-.+..||.+=+ +++|+++|++++
T Consensus 151 H~S~~Kaa~~-lGlg~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~---l~~i~~i~~~~~ 224 (373)
T PF00282_consen 151 HYSIEKAARI-LGLGVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP---LEEIADICEKYN 224 (373)
T ss_dssp -THHHHHHHH-TTSEEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S---HHHHHHHHHHCT
T ss_pred ccHHHHhcce-eeeEEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCcccccccC---HHHHhhhccccc
Confidence 9989999995 999999999987 5679999999999887665554545666777889999855 888899999999
Q ss_pred cEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHH-HHHHcccc-----
Q 046900 234 IHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVT-TARRMSSF----- 307 (442)
Q Consensus 234 ~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~-~~~~~~~~----- 307 (442)
+|+.+|.+|+...+-.+.......-.+ .-.=+..+++|.++ ....+|+++..++.... .+.....+
T Consensus 225 ~wlHVDaA~gg~~~~~~~~~~~~~gi~-------~adSit~d~HK~l~-~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~ 296 (373)
T PF00282_consen 225 IWLHVDAAYGGSALLSPEYRHLLFGIE-------RADSITIDPHKWLG-VPYGCGVLLVRDKSDLRDAFSINADYLGNDD 296 (373)
T ss_dssp -EEEEEETTGGGGGGHCTTGGGGTTGG-------GESEEEEETTTTTS--SSS-EEEEESSGGGHHGGGEEEETCTT-S-
T ss_pred eeeeecccccccccccccccccccccc-------cccccccchhhhhc-CCccceeEEeecccchHHHhccChhhhcccc
Confidence 999999999973332222222111111 11123458999987 66789999987765432 22110111
Q ss_pred -------------CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec-CCce
Q 046900 308 -------------TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK-GNAG 363 (442)
Q Consensus 308 -------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~g 363 (442)
...|. ...++..++.-..+-.+.+++..+...+..+++.+.|++. ++++.. +.-+
T Consensus 297 ~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~ 366 (373)
T PF00282_consen 297 RESDESYDYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLN 366 (373)
T ss_dssp SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSS
T ss_pred cccccccccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCce
Confidence 11232 2222222222111223445666777778888999999887 577654 4444
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-09 Score=102.77 Aligned_cols=330 Identities=14% Similarity=0.117 Sum_probs=192.8
Q ss_pred eeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecCh
Q 046900 50 VIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGA 129 (442)
Q Consensus 50 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~ 129 (442)
+++|+-+--.+|.+.++...+...+-.. .|.+-. .+.+. ..-..++-+.+.+.+.+.++ ++-+.+-+++..|+
T Consensus 8 ~~~f~pGP~~lp~~Vl~~~~~~~~~~~~--~g~s~~-~~sHR--s~~f~~i~~~~~~~L~~l~~--~p~~y~v~~l~Gsg 80 (365)
T PLN02452 8 VFNFSAGPATLPANVLAKAQAELYNWEG--SGMSVM-EMSHR--GKEFLSIIQKAEADLRELLD--IPDNYEVLFLQGGA 80 (365)
T ss_pred eEeeeCCCCCCCHHHHHHHHHHHhcccc--cCcccc-ccCCC--chHHHHHHHHHHHHHHHHhC--CCCCceEEEEeCcc
Confidence 5678777666666665555444321110 011000 11112 12234555566666666554 21112235566779
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCCcC--hHHhHhhhcCcEEEEEecCCCCCC--cCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 130 TAANELLTFILADPGDALLVPTPYYPG--FDRDLRWRTGIKIVPIHCDSSNNF--QITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 130 ~~ai~~~~~~l~~~gd~Vl~~~p~y~~--~~~~~~~~~G~~v~~v~~~~~~~~--~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
+.+++.+...|+.+|+++++..-++.+ +...++ ++|...+.... +.++| .+++++++. ..+.+.|.
T Consensus 81 t~~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~-~~g~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~v~ 150 (365)
T PLN02452 81 STQFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAK-KYCKTNVIASG-KDEKYTKIPSVSEWEL--------TPDAKFVH 150 (365)
T ss_pred HHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHH-HhCCCcEEEec-CCCCCCCCCChHHcCC--------CCCCcEEE
Confidence 999999999999999999988766544 334455 36753333321 12222 345555421 23567777
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+|.....||+.+.. +.++. ++++|+|.+.+- .+. ...+..+ + ++ +.|..|.+|.+|
T Consensus 151 ~~hnETstGv~~~~--~~~i~------~~~lvVDa~Ss~---g~~-pidv~~~---------~-v~-~~saqK~lGP~G- 206 (365)
T PLN02452 151 ICANETIHGVEFKD--YPDVG------NVPLVADMSSNF---LSK-PVDVSKY---------G-VI-YAGAQKNVGPSG- 206 (365)
T ss_pred ECCCCCCCcEecCc--ccccC------CCeEEEECCccc---cCc-ccCHHHc---------C-EE-EEecccccCCCC-
Confidence 77777789996431 33332 379999999873 332 2333322 2 33 469999999888
Q ss_pred eeEEEeecCHHHHHHHHH--------------ccccCCCcHHHHHHHHHHhcCchhHHH--HHHHHHHHHHHHHHHHHHH
Q 046900 286 RVGTIYSYNDKVVTTARR--------------MSSFTLISSQTQYLLASMLSNKKFTEN--YIKTNRERLQKRYQMIIEG 349 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~--------------~~~~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 349 (442)
+|.+++.++.+ +.+.. ...+++.+.....++...++ |+.+ -++.+.++.+++.+++.+.
T Consensus 207 -l~~v~vr~~~l-~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~---~l~~~gGl~~~~~r~~~~a~~l~~~ 281 (365)
T PLN02452 207 -VTIVIIRKDLI-GNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFE---DLLAQGGLKAMEKRNIRKADLLYDA 281 (365)
T ss_pred -eEEEEEcHHHH-hhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHH---HHHHccCHHHHHHHHHHHHHHHHHH
Confidence 68888854433 22211 01112233334444444443 4333 3677888899999999999
Q ss_pred HHhC-CC-ee-ecC--CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHH
Q 046900 350 LRSA-GI-EC-LKG--NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTL 423 (442)
Q Consensus 350 L~~~-g~-~~-~~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i 423 (442)
|++. |+ .. ..+ ...+.+.+.++... ...+|.+.+.++ |+...+|..-- .+ +|+|+- .++.+++
T Consensus 282 l~~~~G~y~~~~~~~~rs~~~vsF~~~~~~------~~~~f~~~~~~~-g~~~~~G~r~~---gg-~R~s~yna~~~~~v 350 (365)
T PLN02452 282 IDESNGFYVCPVEKSVRSLMNVPFTLGGSE------LEAEFVKEAAKA-GMVQLKGHRSV---GG-MRASIYNAMPLAGV 350 (365)
T ss_pred HHhCCCcccCCCChHHhCCeEEEEEcCCch------hHHHHHHHHHHC-CCcccCCcccc---Cc-eEEECcCCCCHHHH
Confidence 9875 66 11 111 24456666666531 356777777555 99999987632 23 999975 5688989
Q ss_pred HHHHHHHHHHHHH
Q 046900 424 EVALKRIHNFMQK 436 (442)
Q Consensus 424 ~~~l~~l~~~l~~ 436 (442)
+.+++.++++-++
T Consensus 351 ~~L~~~m~~f~~~ 363 (365)
T PLN02452 351 EKLVAFMKDFQAK 363 (365)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887655
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-10 Score=112.26 Aligned_cols=279 Identities=15% Similarity=0.140 Sum_probs=154.7
Q ss_pred CcEEEecChHHHHHHHHHhhcC--------------------------CC---CeEEEcCCCCcChHHhHhhhcCcE---
Q 046900 121 NRIVVTAGATAANELLTFILAD--------------------------PG---DALLVPTPYYPGFDRDLRWRTGIK--- 168 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~l~~--------------------------~g---d~Vl~~~p~y~~~~~~~~~~~G~~--- 168 (442)
+.+++++++++|++.+++.... +| ..|+...-+|.+....+....|-.
T Consensus 123 ~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~ 202 (464)
T TIGR00699 123 DQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIH 202 (464)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCcccc
Confidence 6899999999999998876521 11 268888888877543322112211
Q ss_pred --------EEEEecCC-CCCCc-----------CCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHH
Q 046900 169 --------IVPIHCDS-SNNFQ-----------ITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLD 227 (442)
Q Consensus 169 --------v~~v~~~~-~~~~~-----------~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~ 227 (442)
+..+|... ...+. -+++.+++.+.++ +.++.+|++..-....|.+. +.+-+++|.+
T Consensus 203 ~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~ 279 (464)
T TIGR00699 203 KLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKW---HKPVAAIIVEPIQSEGGDNHASPDFFRKLRD 279 (464)
T ss_pred ccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHH
Confidence 11112110 00000 1245566666532 23566666654466668776 5677999999
Q ss_pred HHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHH--Hcc
Q 046900 228 FATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTAR--RMS 305 (442)
Q Consensus 228 ~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~--~~~ 305 (442)
+|++||+++|.||++..+...|..+ ....+.- ..... +.+++|.+| .| |+++. .+.+.. .. ...
T Consensus 280 lc~~~g~lLI~DEV~tGfGrtG~~f-a~e~~gv----~~~PD---i~t~gK~lg-~g---G~~~~-~~~~~~-~~~~~~~ 345 (464)
T TIGR00699 280 ITKKHNVAFIVDEVQTGVGATGKFW-AHEHWNL----DDPPD---MVTFSKKFQ-TA---GYFFH-DPAFRP-NKPYRQF 345 (464)
T ss_pred HHHHcCCEEEEeeeeeCCCCCcchh-HHHhcCC----CCCCC---EEEehhhhc-cC---Ccccc-chhccC-CCCcccc
Confidence 9999999999999998765444311 1111100 00011 356899985 32 44444 222110 01 112
Q ss_pred ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh----CC--Ceee-cCCceEEEEEecCCcccccC
Q 046900 306 SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS----AG--IECL-KGNAGLFCWMNLSPLLEEQT 378 (442)
Q Consensus 306 ~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g--~~~~-~~~~g~~~~~~~~~~~~~~~ 378 (442)
+.+..++++..++.+.|+... + ....+..++.-+++.+.|++ +. +.-. ...-|+++-++++..
T Consensus 346 ~T~~gnp~~~aaa~a~L~~l~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~----- 415 (464)
T TIGR00699 346 NTWMGDPSRALILREIIQEIK--R---KDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDE----- 415 (464)
T ss_pred cCCCCCHHHHHHHHHHHHHHH--h---cCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCH-----
Confidence 223445666555554443211 0 11222222223333333333 22 1111 124677887887532
Q ss_pred hhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHH
Q 046900 379 REGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 379 ~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l 434 (442)
.....+.+.++++ ||++.+. +...+||... .++++++++++++|.+++
T Consensus 416 -~~~~~i~~~~~~~-Gvl~~~~------g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 416 -AKRDKLLKKARNN-GVNIGGC------GVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred -HHHHHHHHHHHHC-CcEEecC------CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 1256788888777 9999763 2367999886 459999999999998763
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.1e-10 Score=118.21 Aligned_cols=286 Identities=15% Similarity=0.180 Sum_probs=176.9
Q ss_pred ccccCCCc-----chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCC--CCeEEEcCCCCcChHH
Q 046900 88 NALFQDYH-----GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADP--GDALLVPTPYYPGFDR 159 (442)
Q Consensus 88 ~~~Y~~~~-----g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~--gd~Vl~~~p~y~~~~~ 159 (442)
...|.|++ |..+..-.+...+.+..| +++.|+-+..+++++.+.++.++ ..+ +|+|++++-.|+....
T Consensus 105 ~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG----~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~ 180 (954)
T PRK05367 105 YTAYTPYQPEISQGRLEALLNFQTMVADLTG----LEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLD 180 (954)
T ss_pred hhccCCCChHHHHHHHHHHHHHHHHHHHHHC----CChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHH
Confidence 34566654 433333333333333333 78999999999999999888776 344 4899999999998776
Q ss_pred hHhh---hcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEE
Q 046900 160 DLRW---RTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHL 236 (442)
Q Consensus 160 ~~~~---~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~v 236 (442)
.++. ..|++++.++.+.+ ++ . .++.++++.+| |-+|.+.+ +++|+++|+++|+++
T Consensus 181 v~~t~a~~~G~ev~~~~~~~d----~~--------~------~~~~~vlvq~p-~~~G~i~d---~~~i~~~ah~~Gal~ 238 (954)
T PRK05367 181 VLRTRAEPLGIEVVVGDAAKA----LD--------H------DDVFGVLLQYP-GTSGEVRD---YTALIAAAHARGALV 238 (954)
T ss_pred HHHHHHHhCCCEEEEecCccC----CC--------c------ccEEEEEEecC-CCCeeecc---HHHHHHHHHHcCCEE
Confidence 5432 37999999986531 11 0 14555666676 56999986 889999999999999
Q ss_pred EEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCccc-----CCCCCceeEEEeecCHHHHHHHH-Hccc----
Q 046900 237 VSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKD-----LGLPGFRVGTIYSYNDKVVTTAR-RMSS---- 306 (442)
Q Consensus 237 i~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~-----~g~~G~RiG~i~~~~~~~~~~~~-~~~~---- 306 (442)
++|-....+.. ..+..++.. -++++|..|. ||-|| .|++.+. +.+.+.+. +...
T Consensus 239 ~vda~~~Al~~----l~~pge~Ga---------Di~vgs~qkfg~P~g~GGP~--aGflavr-~~~~r~lpgrivG~s~d 302 (954)
T PRK05367 239 AVAADLLALTL----LTPPGEMGA---------DIAVGSAQRFGVPMGFGGPH--AAYFAVR-DAYKRSMPGRIVGVSVD 302 (954)
T ss_pred EEEehhhhccC----CCChhhcCC---------CEEEeeCcccCCCCCCCCCC--EEEEEEC-HHHHhhCCCCeeeeecc
Confidence 99875432221 123333433 3788888987 54454 8999984 44443321 1000
Q ss_pred -------------------c--CC---CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC-
Q 046900 307 -------------------F--TL---ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN- 361 (442)
Q Consensus 307 -------------------~--~~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~- 361 (442)
. .+ ++.....++.+.+--..+...-+++..++......++.+.|++.|+++..+.
T Consensus 303 ~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~~~ 382 (954)
T PRK05367 303 AAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHDSF 382 (954)
T ss_pred cCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCCCC
Confidence 0 01 1111111222111000011234667778888888899999987787764332
Q ss_pred ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHH
Q 046900 362 AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIH 431 (442)
Q Consensus 362 ~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~ 431 (442)
.+ -+.++++. +..++.++|+++ ||.+.. . ..+.+|+|+.. -++++++.+++.|.
T Consensus 383 f~-~~~~~~~~--------~~~~i~~~l~~~-gi~~~~---~---~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 383 FD-TLTVEVGG--------DAAAVLARALAA-GINLRR---V---DDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred CC-eEEEeCCC--------CHHHHHHHHHHC-Cceecc---c---cCCEEEEEecccCCHHHHHHHHHHHc
Confidence 12 12233321 367888898777 998833 1 14579999872 28899999999997
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-10 Score=119.30 Aligned_cols=275 Identities=14% Similarity=0.104 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCC--CeEEEcCCCCcChHHhHhh---hcCcEEEE
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPG--DALLVPTPYYPGFDRDLRW---RTGIKIVP 171 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~g--d~Vl~~~p~y~~~~~~~~~---~~G~~v~~ 171 (442)
.++++.||++++ ++++|+-++.++|.+.+.++.++ .++| |+|++++-.|+.+...++. ..|++++.
T Consensus 151 ~~~Qt~ia~LtG--------~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~ 222 (993)
T PLN02414 151 LNYQTMITDLTG--------LPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVV 222 (993)
T ss_pred HHHHHHHHHHhC--------CChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEE
Confidence 455566666654 78999999999999999887666 3444 7899999999998766543 26999999
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
++.+.. + .. +..+-.+++.+|+ .+|.+.+ +++|+++|+++|+++++ .+... +-..
T Consensus 223 v~~~~~-----~------~~------~~~v~~vlvq~P~-~~G~v~d---v~~I~~~ah~~GaL~iV-aad~l---al~~ 277 (993)
T PLN02414 223 ADEKDF-----D------YS------SGDVCGVLVQYPA-TDGEVLD---YAEFVKNAHANGVKVVM-ATDLL---ALTM 277 (993)
T ss_pred ecchhh-----c------cc------cCceEEEEEecCC-CCeEEcC---HHHHHHHHHHcCCEEEE-EECHH---HhcC
Confidence 886431 1 00 0133344554554 4999977 88899999999999999 44332 1112
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccC---CCCCceeEEEeecCHHHHHHHH-Hccc---------------------
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDL---GLPGFRVGTIYSYNDKVVTTAR-RMSS--------------------- 306 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~---g~~G~RiG~i~~~~~~~~~~~~-~~~~--------------------- 306 (442)
..+..++.. -|++++..|.. |..|-+.||+.+.+ .+.+.+- +...
T Consensus 278 l~~pge~GA---------Di~vgsgqKwg~P~G~GGP~aGflavr~-~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqh 347 (993)
T PLN02414 278 LKPPGEWGA---------DIVVGSAQRFGVPMGYGGPHAAFLATSQ-EYKRLMPGRIIGVSVDSSGKPALRMAMQTREQH 347 (993)
T ss_pred CCCHhhccC---------cEEEECCCccccCCCCCCCCeeEEEECH-HHHhhCCCcccCcccCCCCCcccccccccccch
Confidence 223444433 37788888875 33455689999854 3333221 1000
Q ss_pred ----cCCCcHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC-ceEEEEEecCCcccccC
Q 046900 307 ----FTLISSQTQYLLASMLSNK---KFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN-AGLFCWMNLSPLLEEQT 378 (442)
Q Consensus 307 ----~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~g~~~~~~~~~~~~~~~ 378 (442)
.++.+.-+..++.+.+... .+...-+++.+++..+...++.+.|.+.|+++..+. .+ -+.++++.
T Consensus 348 iRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~~~f~-~vt~~~~~------ 420 (993)
T PLN02414 348 IRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQSLPFFD-TVKVKCSD------ 420 (993)
T ss_pred hhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCCccCCCCCcC-eEEEecCC------
Confidence 0111111111222222110 000123566778888888899999988887765432 22 22334432
Q ss_pred hhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecC-CHHHHHHHHHHHHH
Q 046900 379 REGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANM-SEQTLEVALKRIHN 432 (442)
Q Consensus 379 ~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~-~~e~i~~~l~~l~~ 432 (442)
..++.++|.++ ||.++.- ..+.+|+|+... ++++|+.+++.|..
T Consensus 421 ---~~~v~~~L~~~-gI~l~~~------~~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 421 ---ADAIADAAAKV-GINLRVV------DANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred ---HHHHHHHHHHC-CCeeEEe------cCCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 46788888776 9977642 135699998722 88999999999963
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-09 Score=104.38 Aligned_cols=292 Identities=14% Similarity=0.136 Sum_probs=167.1
Q ss_pred CCcEEEecChHHHHHHHHHhhc-------CCC-CeEEEcCCCCcChHH-hHhhhcC-------------cEEEEEecCCC
Q 046900 120 LNRIVVTAGATAANELLTFILA-------DPG-DALLVPTPYYPGFDR-DLRWRTG-------------IKIVPIHCDSS 177 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~-------~~g-d~Vl~~~p~y~~~~~-~~~~~~G-------------~~v~~v~~~~~ 177 (442)
-+.|++++|++++++.+++... +|. .+++.-..+|.+-.- .+.. .| ..+..+|....
T Consensus 105 l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv-~g~~~~~~~~~~~ll~~~~~~~~P~~ 183 (449)
T COG0161 105 LDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSV-GGPVALRHAFYDPLLPEVLHLPAPYA 183 (449)
T ss_pred ccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheec-cCchhhhhhhccccccCceecCCCcc
Confidence 4689999999999999887642 232 347777888855321 1111 12 11222222210
Q ss_pred ------CCCc----CCHHHHHHHHHHHHhcCCceeEEEEeCC-C-CCCCcCCCHHH-HHHHHHHHHhcCcEEEEeccCCc
Q 046900 178 ------NNFQ----ITPQALEAAYKEAESKDMRVRGVLITNP-S-NPLGATIQRSV-LEELLDFATRKNIHLVSDEIYSG 244 (442)
Q Consensus 178 ------~~~~----~d~~~l~~~l~~~~~~~~~~~~v~l~~P-~-NPtG~~~~~~~-l~~l~~~~~~~~~~vi~De~y~~ 244 (442)
+.+. -..++|++.+.+ +++..-+-++.-| . .-+|+.++.+. ++++.++|++||+++|.||+-..
T Consensus 184 y~~~~~~~~~~~~~~~a~~le~~i~~---~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tG 260 (449)
T COG0161 184 YRRGFFGEGDEEFAEAADELEALILE---HGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATG 260 (449)
T ss_pred cccCCCCCChHHHHHHHHHHHHHHHh---cCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeC
Confidence 1111 124566666665 3423334455556 3 44887765555 99999999999999999999988
Q ss_pred CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc--ccc-----CCCcHHHHHH
Q 046900 245 SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM--SSF-----TLISSQTQYL 317 (442)
Q Consensus 245 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~--~~~-----~~~s~~~q~~ 317 (442)
|..+|..|.. ... +..+. +-+++|.+.-.=+.+|.+++ .+.+.+.+..- ..+ ++.++++.++
T Consensus 261 FGRTG~~FA~----e~~---gi~PD---i~~~aKGLT~GY~Pl~a~l~-~~~I~~~~~~~~~~~f~HG~TYsghPlacAa 329 (449)
T COG0161 261 FGRTGKMFAC----EHA---GIVPD---ILCLAKGLTGGYLPLSAVLT-SDRIYEAFSDGDAGAFMHGHTYSGNPLACAA 329 (449)
T ss_pred CCcCchhhhh----hhc---CCCCC---eeeecccccccchhhHhHhh-hHHHHHHHhcccCCeeccCCccccCHHHHHH
Confidence 7766654321 111 00122 34678987522366777777 45566555432 211 3456666666
Q ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCee--ecCCceEEEEEecCCcccccC---hhhHHHHHHHHH
Q 046900 318 LASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS-A-GIEC--LKGNAGLFCWMNLSPLLEEQT---REGELALWDSML 390 (442)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~--~~~~~g~~~~~~~~~~~~~~~---~~~~~~l~~~l~ 390 (442)
+.+-|+- +++ +...++.++.-.++.+.|++ + +... ..-.-|++.-+++........ ..-...+...++
T Consensus 330 Ala~L~i---~e~--e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~ 404 (449)
T COG0161 330 ALANLDI---LEE--EDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAAL 404 (449)
T ss_pred HHHHHHH---HHh--cCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHH
Confidence 5555442 111 12233334445555666654 1 1112 224567777777755433221 112445666665
Q ss_pred HcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 391 HEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 391 ~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
++ |+.++|.. ..+-++.. .++++++++.++++.+.++....
T Consensus 405 e~-Gl~iRp~g-------~~i~~~PPliit~~eid~l~~~l~~al~~~~~ 446 (449)
T COG0161 405 ER-GLLIRPLG-------DVIYLMPPLIITREEIDELVDALREALDETLA 446 (449)
T ss_pred HC-CeEEeecC-------CEEEEcCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence 66 99999951 23445543 34899999999999999987544
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-09 Score=107.52 Aligned_cols=280 Identities=13% Similarity=0.107 Sum_probs=151.4
Q ss_pred CCcEEEecChHHHHHHHHHhhcC--------C------CCeEEEcCCCCcChHHhHhhhcCcE-EE--EEec--------
Q 046900 120 LNRIVVTAGATAANELLTFILAD--------P------GDALLVPTPYYPGFDRDLRWRTGIK-IV--PIHC-------- 174 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~--------~------gd~Vl~~~p~y~~~~~~~~~~~G~~-v~--~v~~-------- 174 (442)
.+.+++++++++|++.+++.... . +.+|+...-+|.+....+....|.. .. ..|.
T Consensus 103 ~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~ 182 (431)
T TIGR03251 103 LPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDN 182 (431)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCC
Confidence 36899999999999998876521 1 3678888888877543322112211 00 0010
Q ss_pred CC-CCCC-----c-------CCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcC-CCHHHHHHHHHHHHhcCcEEEEec
Q 046900 175 DS-SNNF-----Q-------ITPQALEAAYKEAESKDMRVRGVLITNPSNPLGAT-IQRSVLEELLDFATRKNIHLVSDE 240 (442)
Q Consensus 175 ~~-~~~~-----~-------~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De 240 (442)
.. ..++ . -+++.+++.+.+ ...++.++++..-....|.+ .+.+-+++|.++|++||+++|+||
T Consensus 183 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DE 259 (431)
T TIGR03251 183 PKLTFPLDAPNLDQVIALEEEALRQARAAFAE---RPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDE 259 (431)
T ss_pred CcccCCccccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 00 0000 0 013344444442 23466666666446666765 567779999999999999999999
Q ss_pred cCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHH-------HccccCCCcHH
Q 046900 241 IYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTAR-------RMSSFTLISSQ 313 (442)
Q Consensus 241 ~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~-------~~~~~~~~s~~ 313 (442)
++..+...|..+ ....+.- ...++ +++|.+ +. .|++.. .+ +.+... .....++.+++
T Consensus 260 V~tG~GrtG~~~-a~~~~gv------~PDi~---~~gK~~--~~--~g~~~~-~~-i~~~~~~~~~~~~~~~~T~~gnpl 323 (431)
T TIGR03251 260 VQTGVGLTGTAW-AYQQLGV------QPDIV---AFGKKT--QV--CGIMAG-RR-VDEVADNVFAVPSRLNSTWGGNLV 323 (431)
T ss_pred chhccCccchHH-HHHhcCC------CCCEE---EecccC--cc--ceEEec-ch-HHHhhhhcccCccccCCCCCCCHH
Confidence 999765544211 1111110 12222 578986 22 266654 32 222111 11222445666
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHc
Q 046900 314 TQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAG-IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHE 392 (442)
Q Consensus 314 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 392 (442)
+..++.+.|+-..- ...+++.++.-+..++.|.+...+.. +......-|+++.++++.. .....++..|+++
T Consensus 324 ~~aaa~a~L~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~------~~~~~~~~~l~~~ 396 (431)
T TIGR03251 324 DMVRATRILEIIEE-ERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPST------ADRDEVIRQLYRE 396 (431)
T ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCCH------HHHHHHHHHHHhC
Confidence 66666665552110 01112222222222333333222232 3222223466777777542 1245678888766
Q ss_pred CcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHH
Q 046900 393 VKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHN 432 (442)
Q Consensus 393 ~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~ 432 (442)
||++.|.. ...+|++.+ .++++++++++++|.+
T Consensus 397 -Gvl~~~~g------~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 397 -GVLLLGCG------ERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred -CeEEecCC------CCeEEEECCccCCHHHHHHHHHHHHh
Confidence 99998742 245888775 3489999999999875
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-09 Score=98.32 Aligned_cols=324 Identities=16% Similarity=0.231 Sum_probs=207.3
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCC-----CeEEEcCCCCcChH-HhHh
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPG-----DALLVPTPYYPGFD-RDLR 162 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~g-----d~Vl~~~p~y~~~~-~~~~ 162 (442)
..|....++..|.+++.+.++ -+-++.|.-+..|=.+++..+++++ .+..+++..|.... ...+
T Consensus 73 EAYagsrs~~~L~~avkdifG----------fq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~ 142 (471)
T COG3033 73 EAYAGSRSYYALADAVKDIFG----------FQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQ 142 (471)
T ss_pred hhhcccccHHHHHHHHHHhcC----------ceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHH
Confidence 358788889999999999876 2446667767777677777676644 44444555554433 3344
Q ss_pred hhcCcEEEEEecCCCCC--------CcCCHHHHHHHHHHHHhcCCceeEEEEeCCCC-CCCcCCCHHHHHHHHHHHHhcC
Q 046900 163 WRTGIKIVPIHCDSSNN--------FQITPQALEAAYKEAESKDMRVRGVLITNPSN-PLGATIQRSVLEELLDFATRKN 233 (442)
Q Consensus 163 ~~~G~~v~~v~~~~~~~--------~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~N-PtG~~~~~~~l~~l~~~~~~~~ 233 (442)
..|+.++.++.++..+ -.+|++.|++.|.+... .++..|+++..+| ..|+..|.+.++++.++|++|+
T Consensus 143 -~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~--~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ 219 (471)
T COG3033 143 -INGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGA--DNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYD 219 (471)
T ss_pred -hcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCc--ccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcC
Confidence 4888888888776432 23789999999987532 2455677665555 6789999999999999999999
Q ss_pred cEEEEecc-CCcCCC------CCCCcccHHHHHhhh-cCCCCCcEEEEecCcccCCCCCceeEEEeecCHH---HHHHHH
Q 046900 234 IHLVSDEI-YSGSAF------SSSEFVSIAEILEAR-QYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDK---VVTTAR 302 (442)
Q Consensus 234 ~~vi~De~-y~~~~~------~~~~~~s~~~~~~~~-~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~---~~~~~~ 302 (442)
+.++.|-+ |.+..| .+-...|+.++..++ ++ .+ - ..-|.-|. |+..+ .|+++..++. +...++
T Consensus 220 ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sY--aD-~-~~mS~KKD-~lvnm-GGfl~~~D~~~fDvy~~~~ 293 (471)
T COG3033 220 IPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSY--AD-G-CTMSAKKD-GLVNM-GGFLCFKDDSFFDVYEECR 293 (471)
T ss_pred CcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhh--hh-h-heeecccc-ceecc-ccEEEecCccHHHHHHHHH
Confidence 99999988 333222 122456777776652 11 11 1 23455564 23322 2677775553 333343
Q ss_pred H-------ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCccc
Q 046900 303 R-------MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLE 375 (442)
Q Consensus 303 ~-------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~ 375 (442)
. +.++++++.-...+++.-|.+.- -..|+.+...++ ++|.+.|.+.|+++..|.||--++++..+.+.
T Consensus 294 ~~~V~~eG~~tYGgl~GrdmealAvGL~e~~-~~~yl~~Rv~Qv----~YL~~~l~~~GVpi~~paGGHavfvda~~~lp 368 (471)
T COG3033 294 TLVVVQEGFPTYGGLAGRDMEALAVGLREGV-NFDYLAHRVAQV----QYLADGLEEAGVPIVQPAGGHAVFVDAGKFLP 368 (471)
T ss_pred hheEeeccccccCcccchhHHHHHHHHHHhc-CcHHHHHHHHHH----HHHHHHHHhcCCeeEecCCCceEEeehhhhcC
Confidence 2 22344455444444444444321 134555554443 68889999999999999999889988765443
Q ss_pred ccCh--hhHHHHHHHHHHcCcEEEeCCCCCCCC-C----------CCEEEEEee--cCCHHHHHHHHHHHHHHHHH
Q 046900 376 EQTR--EGELALWDSMLHEVKLNISPGSSCHCS-E----------PGWFRVCFA--NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 376 ~~~~--~~~~~l~~~l~~~~gi~v~pg~~f~~~-~----------~~~iRls~~--~~~~e~i~~~l~~l~~~l~~ 436 (442)
.-.. ..++.|+.+|..+.||-..--..|... . -..+|+++. .-+.+.++-.++.++++.+.
T Consensus 369 hip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 369 HIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred CCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhc
Confidence 2111 137888899999999987643333221 1 135999986 23678888888888877654
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-09 Score=97.99 Aligned_cols=345 Identities=13% Similarity=0.123 Sum_probs=194.4
Q ss_pred CCCCCCCceeeeecccc----cccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCc
Q 046900 42 EESTNPSGVIQMGLAEN----QVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAK 117 (442)
Q Consensus 42 ~~~~~~~~~i~l~~~~n----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~ 117 (442)
..+.+.+.++|+-.+.- -.+++.+...+.++.... + .....|..+ -..++-+++++.+-
T Consensus 44 lyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l-~-------H~t~~~~~~-pi~~~Ae~L~s~~P-------- 106 (442)
T KOG1404|consen 44 LYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKL-Y-------HTTSGYLNP-PIHDLAEALVSKLP-------- 106 (442)
T ss_pred EEcCCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhh-E-------EeeccccCC-cHHHHHHHHHHhCC--------
Confidence 34455566677654321 124455555554443211 1 122345433 23566666666532
Q ss_pred cCCCcEEEecChHHHHHHHHHhh---cCCCCeEEEcCCCCcCh-HHhHhhhcCcEEEEEecCCC--------------CC
Q 046900 118 FDLNRIVVTAGATAANELLTFIL---ADPGDALLVPTPYYPGF-DRDLRWRTGIKIVPIHCDSS--------------NN 179 (442)
Q Consensus 118 ~~~~~i~~t~G~~~ai~~~~~~l---~~~gd~Vl~~~p~y~~~-~~~~~~~~G~~v~~v~~~~~--------------~~ 179 (442)
-+-..++++|+++||+++++... .+.-| ++--.-+|.+. ...+.+ .|......+.+.. +-
T Consensus 107 ~~l~~vfF~nsGsEANelal~mar~Yt~~~d-iIa~r~~YHG~t~~t~gl-t~~~~~k~~~~~~~~~~~~~~~Pdp~r~~ 184 (442)
T KOG1404|consen 107 GDLKVVFFVNSGSEANELALKMARLYTGNLD-IIARRNSYHGNTLYTLGL-TGLSPWKQNFPGVASGVHHTMNPDPYRGI 184 (442)
T ss_pred CCceEEEEecCCchHHHHHHHHHHHhcCCce-EEEeeccccCCchhhccc-ccCCcccccCCCCCCcccccCCCCccccc
Confidence 23446999999999999987654 33334 44444455443 333321 3333322221111 11
Q ss_pred CcCC-----H----HHHHHHHHHHHhcCCceeEEEEeCC-CCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCCCC
Q 046900 180 FQIT-----P----QALEAAYKEAESKDMRVRGVLITNP-SNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSAFS 248 (442)
Q Consensus 180 ~~~d-----~----~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~ 248 (442)
|.-+ - +++++.+.. .+..+-+-++.-| +.-.|.+ ++.--+++..++|+++|.++|.||+...|...
T Consensus 185 ~~~~~~~e~~d~~a~~l~d~i~~---~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRt 261 (442)
T KOG1404|consen 185 FGGSNEEEASDRYAKELEDLILY---DGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRT 261 (442)
T ss_pred CCCCchhhhHHHHHHHHHHHHHh---cCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccc
Confidence 1111 2 334444432 1223334455544 5555654 45666999999999999999999999987766
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc-cc--CCCcHHHHHHHHHHhcCc
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS-SF--TLISSQTQYLLASMLSNK 325 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~-~~--~~~s~~~q~~~~~~l~~~ 325 (442)
| .+.. +.. .+.+--+-|++|.+| .|+.+|.++. .+++.+.+.+.. .+ +..++++.++..+.|+-.
T Consensus 262 G-~~wg---fe~------h~v~PDIvTmAKgiG-nG~Pl~AVvt-t~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vi 329 (442)
T KOG1404|consen 262 G-HMWG---FES------HGVVPDIVTMAKGIG-NGFPLGAVVT-TPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVI 329 (442)
T ss_pred c-cccc---ccc------cCCCccHHHHHhhcc-CCCcceeeec-CHHHHHHHHhccccccccCCCchhHHHHHHHHHHH
Confidence 6 3333 322 233344679999999 9999999998 678888887654 22 455777777777776642
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeee--cCCceEEEEEecCCcc-cccC--hhhHHHHHHHHHHcCcEEEe
Q 046900 326 KFTENYIKTNRERLQKRYQMIIEGLRSA--GIECL--KGNAGLFCWMNLSPLL-EEQT--REGELALWDSMLHEVKLNIS 398 (442)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~g~~~~~~~~~~~-~~~~--~~~~~~l~~~l~~~~gi~v~ 398 (442)
+ ++ ++.+.-++.-.+|.+.|.+. +.+.+ .-..|+++-+++-... +... ......+.+++.+. |++|-
T Consensus 330 k--ee---~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~-Gvlvg 403 (442)
T KOG1404|consen 330 K--EE---NLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKEL-GVLVG 403 (442)
T ss_pred H--HH---hHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHh-Ceeee
Confidence 2 22 23333344445555555443 22322 2456778777764322 1111 11234556666555 99997
Q ss_pred CCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHH
Q 046900 399 PGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRI 430 (442)
Q Consensus 399 pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l 430 (442)
-|..++ ..+||+.. .+++++++.+++..
T Consensus 404 ~g~i~G----~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 404 KGGIHG----NVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred cccccc----eEEEecCCeeccHHHHHHHHHHH
Confidence 776654 38999876 55899996666644
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.7e-09 Score=103.65 Aligned_cols=170 Identities=17% Similarity=0.173 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS 176 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~ 176 (442)
..+..+-.|+.++ ....-+++||++.++..++.+++.+||.|+++.++|-+....+-+ .|+..+++....
T Consensus 72 i~eAqe~aA~~fg---------Ad~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glil-aGa~Pvyl~p~~ 141 (557)
T COG1982 72 IKEAQELAARVFG---------ADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLIL-AGATPVYLEPSR 141 (557)
T ss_pred HHHHHHHHHHHhC---------CCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHH-cCCceEEecCCC
Confidence 3555566666654 234689999999999999999999999999999999998888775 899888876543
Q ss_pred CCCC----cCCHHHHHHHHHHHHhcCCce-eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 177 SNNF----QITPQALEAAYKEAESKDMRV-RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 177 ~~~~----~~d~~~l~~~l~~~~~~~~~~-~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
+..| +++.+.+++++.+.. .. |+++++||+. .|.++. +++|++++..+++++.+|+++....-....
T Consensus 142 np~~gi~ggI~~~~~~~~l~~~~----~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~~a~v~~deah~~~~~~~~~ 213 (557)
T COG1982 142 NPLYGIIGGIPLETFKEALLAHP----DAEKLAVITNPTY-DGVCYN---LRKIVELLHHYGAWVLYDEAHPAHFDFSPM 213 (557)
T ss_pred CccccccCCCCHHHHHHHHHhCh----hhheeEEEecCcc-ceEeec---HHHHHHHHhhcCceEEhhhcCccccccccc
Confidence 3222 468999999887643 33 7889998876 699998 677778888999999999998752211111
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeec
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSY 293 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~ 293 (442)
... ... + .+.++++.|.+|.++ +.-..++|...
T Consensus 214 l~~-~~~--~-----~~~~~~tqS~HK~l~-alSQaS~iHv~ 246 (557)
T COG1982 214 LPE-SAL--N-----GGADFVTQSTHKLLA-ALSQASMIHVK 246 (557)
T ss_pred Ccc-hhh--h-----cCceEEEechhhhhh-hhhhhHHHhhC
Confidence 111 111 1 366788999999985 44455566664
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.6e-09 Score=110.01 Aligned_cols=230 Identities=13% Similarity=0.076 Sum_probs=133.0
Q ss_pred HHHHHHHHHHH--hcCCceeEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHh
Q 046900 185 QALEAAYKEAE--SKDMRVRGVLITNP-SNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILE 260 (442)
Q Consensus 185 ~~l~~~l~~~~--~~~~~~~~v~l~~P-~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~ 260 (442)
+.+++.|.+.. ..+.++.++|+... +.-.|.++ +.+-+++|.++|++||+++|.||++..|...|..+. ...+.-
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa-~e~~gv 645 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESA-WELLGC 645 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhh-HHhcCC
Confidence 44555554311 11235555555532 57678876 566699999999999999999999998766664321 111111
Q ss_pred hhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH--------ccccCCCcHHHHHHHHHHhc---CchhH
Q 046900 261 ARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR--------MSSFTLISSQTQYLLASMLS---NKKFT 328 (442)
Q Consensus 261 ~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~--------~~~~~~~s~~~q~~~~~~l~---~~~~~ 328 (442)
.+. +-+++|.++ .| +.+|.+++ .+.+.+.+.. ....++.++++.+++.+.|+ +.+..
T Consensus 646 ------~PD---Ii~~gKgLt-gG~~Plaa~l~-~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~ 714 (817)
T PLN02974 646 ------KPD---IACYAKLLT-GGLVPLAATLA-TEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTN 714 (817)
T ss_pred ------CCC---EEeeccccc-CCCCccEEEEE-cHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHH
Confidence 112 346899998 89 69999999 5677766631 12234566777666655554 33221
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhCCCeeecCCceEEEEEecCCcccccC--hhhHHHHHHHHHHcCcEEEeCCCCCCC
Q 046900 329 ENYIKTNRERLQKR-YQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQT--REGELALWDSMLHEVKLNISPGSSCHC 405 (442)
Q Consensus 329 ~~~~~~~~~~~~~~-~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~gi~v~pg~~f~~ 405 (442)
. .+.+..+.+.+. ++.+.+.|.++..-...-.-|+++.+++........ ...+..+.+.++.+.||+++|.
T Consensus 715 ~-~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~----- 788 (817)
T PLN02974 715 P-NLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL----- 788 (817)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec-----
Confidence 1 222222222211 223333444432211223445677777753211111 1124567777772449999983
Q ss_pred CCCCEEEEEee-cCCHHHHHHHHHHHHHHH
Q 046900 406 SEPGWFRVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 406 ~~~~~iRls~~-~~~~e~i~~~l~~l~~~l 434 (442)
.+.+|+... .++++++++++++|.+.+
T Consensus 789 --Gnvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 789 --GNVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred --CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 146887554 448999999999998765
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-09 Score=97.47 Aligned_cols=293 Identities=16% Similarity=0.215 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC--------C-CC-eEEEcCCCCcCh-HHhHhh---
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD--------P-GD-ALLVPTPYYPGF-DRDLRW--- 163 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~--------~-gd-~Vl~~~p~y~~~-~~~~~~--- 163 (442)
..+--+.++|+.+.++ -+.|+.++-+.|+.+.++....+ | .. .|+...-+|.+- ..++..
T Consensus 100 nd~~~~f~~~vt~lf~------~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d 173 (427)
T KOG1402|consen 100 NDVLGEFAEYVTKLFG------YDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTD 173 (427)
T ss_pred hhhHHHHHHHHHHhcC------cceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCC
Confidence 3444466777776654 56788888888888888765531 2 22 344344444331 111110
Q ss_pred -----hcCc----EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHH-HHHHHHHHHhcC
Q 046900 164 -----RTGI----KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSV-LEELLDFATRKN 233 (442)
Q Consensus 164 -----~~G~----~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~-l~~l~~~~~~~~ 233 (442)
..|- .+..+| | -|.++|+.+++. +++.++++..-+...|++.|.+. ++++.++|.+||
T Consensus 174 ~ds~~~fgp~~P~~~~~v~------Y-~d~eale~~l~~-----~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkyn 241 (427)
T KOG1402|consen 174 PDSWDGFGPFLPGVVDKVP------Y-GDAEALEVALKS-----PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYN 241 (427)
T ss_pred cchhhccCCCCCCcceeec------c-CCHHHHHHHhcC-----CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhc
Confidence 0110 011121 1 168999999874 46665555544889998887665 999999999999
Q ss_pred cEEEEeccCCcCCCCCCCcc-cHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH--ccccCC
Q 046900 234 IHLVSDEIYSGSAFSSSEFV-SIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR--MSSFTL 309 (442)
Q Consensus 234 ~~vi~De~y~~~~~~~~~~~-s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~--~~~~~~ 309 (442)
+++|.||+...+..+|+-.. .....- ++ +++ |.|+++ .| +.++.+++ ++++.-.++. ..+.++
T Consensus 242 vl~I~DEvQTGl~RTGk~la~d~env~-------PD-ivi---lgKalS-GG~~Pvsavl~-~~~im~~~~pgeHgsTyg 308 (427)
T KOG1402|consen 242 VLLIADEVQTGLARTGKLLACDYENVR-------PD-IVI---LGKALS-GGVYPVSAVLA-DDDIMLNIKPGEHGSTYG 308 (427)
T ss_pred EEEEehhhhhcccccCcEEEeehhhcC-------CC-eEE---Eecccc-CCeeeeEEEEe-cHHHHhccCCCccccccC
Confidence 99999999998877775321 111111 23 332 468886 44 67888888 5555555543 333456
Q ss_pred CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCee-----ecCCceEEEEEecCCcccccChhhHHH
Q 046900 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIEC-----LKGNAGLFCWMNLSPLLEEQTREGELA 384 (442)
Q Consensus 310 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~ 384 (442)
.+++..+++.+.|+-.. + +++.++.+..-+.|...|.++.-++ ....-|++..+.+..... ...++++
T Consensus 309 gNpLg~~vaiAalevi~--e---ekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~~~~~--~~~~aw~ 381 (427)
T KOG1402|consen 309 GNPLGCAVAIAALEVIV--E---EKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKT--SGQDAWD 381 (427)
T ss_pred CChHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHHHhccccccchhheeeccceEEEEEeccccc--cchhHHH
Confidence 68888887777776321 2 2344444555566777776652111 123456777776653211 1235888
Q ss_pred HHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHH
Q 046900 385 LWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 385 l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~ 435 (442)
+|-.+.+. |++--|-. ..-||+... .+++++++++++.|.+.+.
T Consensus 382 ~cl~lk~~-g~LAkptH------~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 382 VCLALKEN-GLLAKPTH------GNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred HHHccccc-ccccCCCC------CCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 88888555 99877732 347999876 5699999999999998764
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-08 Score=100.30 Aligned_cols=330 Identities=15% Similarity=0.123 Sum_probs=196.8
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC----------------------------
Q 046900 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD---------------------------- 142 (442)
Q Consensus 91 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~---------------------------- 142 (442)
|....+...+.+.+.+++.+..|. +...-.+|+|+|+++...+.+..+
T Consensus 115 ~e~SP~~t~lE~~vi~~la~l~G~----~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~ 190 (608)
T TIGR03811 115 YESSPATSQMEEEVGKEFATLMGY----KNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMP 190 (608)
T ss_pred cccCchHHHHHHHHHHHHHHHhCC----CCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccc
Confidence 434456789999999999999873 344566899999888764433211
Q ss_pred ------------------------CC------CeEEEcCCCCcChHHhHhhhcCc---EEEEEecCCCCCCcCCHHHHHH
Q 046900 143 ------------------------PG------DALLVPTPYYPGFDRDLRWRTGI---KIVPIHCDSSNNFQITPQALEA 189 (442)
Q Consensus 143 ------------------------~g------d~Vl~~~p~y~~~~~~~~~~~G~---~v~~v~~~~~~~~~~d~~~l~~ 189 (442)
+| -+|+++.-.|..+..++.. .|+ +++.||+++ ++.+|++.|++
T Consensus 191 ~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~i-lGlG~~~vv~VpvD~--~~rmd~~~L~~ 267 (608)
T TIGR03811 191 TKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADI-IGIGLDQVIPVPVDS--NYRMDINELEK 267 (608)
T ss_pred cccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHH-cCCCcccEEEeecCC--CCcCCHHHHHH
Confidence 00 0578888889999999885 888 589999875 56899999999
Q ss_pred HHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCc--EEEEeccCCcCC---CCCC--Cccc--------
Q 046900 190 AYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNI--HLVSDEIYSGSA---FSSS--EFVS-------- 254 (442)
Q Consensus 190 ~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~--~vi~De~y~~~~---~~~~--~~~s-------- 254 (442)
.|++...++..+-+|+-+-.+..+|.+=+.+++.+|++.++++|+ ++.+|.+|+.+. +... .+.+
T Consensus 268 ~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~ 347 (608)
T TIGR03811 268 IIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVH 347 (608)
T ss_pred HHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhccc
Confidence 998776666556567777788899999887666666666678887 699999999853 1110 0011
Q ss_pred ----------------HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc-----------
Q 046900 255 ----------------IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF----------- 307 (442)
Q Consensus 255 ----------------~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~----------- 307 (442)
....... ...--=+.-.++|.+. ....+|.++..+..+.+.+.....+
T Consensus 348 ~~~~~f~~~~~~l~~~~~~~l~g----le~ADSItvDpHK~g~-~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~ 422 (608)
T TIGR03811 348 AEYGVFTEKKEYISREVYNAYKA----ISEAESVTIDPHKMGY-IPYSAGGIVIQDIRMRDVISYFATYVFEKGADIPAL 422 (608)
T ss_pred ccccccccccccccHhHHHHHhc----CcCceEEEeCcccccc-cCCCeEEEEEeCHHHHHHHhcCcchhccccccCccc
Confidence 1111111 0111122458999875 6688999888777665544321111
Q ss_pred -----CCCcHH-----HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCee---ecCCceEEEE
Q 046900 308 -----TLISSQ-----TQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-------GIEC---LKGNAGLFCW 367 (442)
Q Consensus 308 -----~~~s~~-----~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~---~~~~~g~~~~ 367 (442)
...+.+ ..+++...+.- ..+-+.++.+..-+..+++.+.|.+. .+++ .+|+-++.++
T Consensus 423 ~g~~~legSR~ga~AlklW~~lr~l~~---G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~F 499 (608)
T TIGR03811 423 LGAYILEGSKAGATAASVWAAHKVLPL---NVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDY 499 (608)
T ss_pred ccccceecCCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEE
Confidence 011212 22222222210 12234566666677778888888763 2443 4566665554
Q ss_pred EecCCcccccChhhHHHHHHHHHHcCc----------EEEeCCCCCCC----------------CCC--------CEEEE
Q 046900 368 MNLSPLLEEQTREGELALWDSMLHEVK----------LNISPGSSCHC----------------SEP--------GWFRV 413 (442)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~l~~~~g----------i~v~pg~~f~~----------------~~~--------~~iRl 413 (442)
.-.+.... ..+...++-+++.++.. +.+.. ..|.. ... ..+|-
T Consensus 500 r~~~~g~~--~l~~~n~ln~~i~~~~~~~~g~~~~~~~~~s~-t~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 576 (608)
T TIGR03811 500 VFNEKGND--DLVKMNKLNHAFYDYASYVKGSIYNNEFITSH-TDFAIPDYGDSPFAFVNSLGFSDEEWQRAGKVTILRA 576 (608)
T ss_pred EEecCCCc--cHHHHHHHHHHHHHhhccccCCCCCcceEeee-cccccchhhhhHHHHHHHcCCChhhhccCCceEEEEE
Confidence 43333211 11223444444444322 11111 11210 101 24777
Q ss_pred EeecC---CHHHHHHHHHHHHHHHHHHH
Q 046900 414 CFANM---SEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 414 s~~~~---~~e~i~~~l~~l~~~l~~~~ 438 (442)
++-++ +.+.+++.+.+|++++.+.-
T Consensus 577 ~~m~p~~~~~~~~~~~~~~~~~~~~~~~ 604 (608)
T TIGR03811 577 SVMTPYMNDKENFDEYAPKIKAAMQEKL 604 (608)
T ss_pred EecCcccCChhhHHHHHHHHHHHHHHHH
Confidence 76432 55778899999998877643
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.3e-09 Score=95.36 Aligned_cols=190 Identities=21% Similarity=0.252 Sum_probs=113.8
Q ss_pred CcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEec---ChHHHHHHHHHhhcCCCCeEEEc-CCCCcChHHhH
Q 046900 86 RENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA---GATAANELLTFILADPGDALLVP-TPYYPGFDRDL 161 (442)
Q Consensus 86 ~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~---G~~~ai~~~~~~l~~~gd~Vl~~-~p~y~~~~~~~ 161 (442)
....+|+.. ..=|+.+-+-+.+.++ .++-++=. ++|+||..++..+++|||+.+.. -.-|......+
T Consensus 44 ~~tTGYGY~---D~GRd~le~iyA~vfg------aE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VI 114 (403)
T PF06838_consen 44 AGTTGYGYD---DIGRDKLERIYADVFG------AEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVI 114 (403)
T ss_dssp S---TT-TT----HHHHHHHHHHHHHCT-------SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHH
T ss_pred CCCCcCCCC---CccHHHHHHHHHHHhC------chhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHh
Confidence 344555432 2334455554544433 55555533 68999999999999999999853 33455444443
Q ss_pred ----------hhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEe-CCCCCCCcCCCHHHHHHHHHHHH
Q 046900 162 ----------RWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLIT-NPSNPLGATIQRSVLEELLDFAT 230 (442)
Q Consensus 162 ----------~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~-~P~NPtG~~~~~~~l~~l~~~~~ 230 (442)
+ ..|++...+++.+++ .+|.+.++++++. ++|++++. +...-+=..++.+++++++++++
T Consensus 115 G~~g~~~GSL~-e~Gi~Y~~v~L~~dg--~~D~~~i~~~~~~------~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk 185 (403)
T PF06838_consen 115 GIRGNGPGSLK-EFGIKYREVPLTEDG--TIDWEAIKKALKP------NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVK 185 (403)
T ss_dssp TSSSSSSSSTG-GGT-EEEE--B-TTS--SB-HHHHHHHHHT------TEEEEEEE-S-TTSSS----HHHHHHHHHHHH
T ss_pred CCCCCCCCChH-HhCceeEEEeecCCC--CcCHHHHHHhhcc------CceEEEEecCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4 278999999998765 4899999999985 89998887 44566667799999999999997
Q ss_pred hc--CcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc--eeEEEeecCHHHHHHHHHccc
Q 046900 231 RK--NIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF--RVGTIYSYNDKVVTTARRMSS 306 (442)
Q Consensus 231 ~~--~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~--RiG~i~~~~~~~~~~~~~~~~ 306 (442)
+. ++++++|.+|++|+-...+ + +. +--++.+|+-|..| .|+ --|||++..+.+.....++..
T Consensus 186 ~~~p~~iifVDNCYGEFvE~~EP--~--~v---------GADl~aGSLIKNpG-GgiAptGGYIaGr~~lVe~~a~RLTa 251 (403)
T PF06838_consen 186 EINPDVIIFVDNCYGEFVETQEP--T--EV---------GADLMAGSLIKNPG-GGIAPTGGYIAGRKDLVERAAYRLTA 251 (403)
T ss_dssp HH-TTSEEEEE-TTTTTTSSS-G--G--GG---------T-SEEEEETTSGGG-TTT-SS-EEEEESHHHHHHHHHHHS-
T ss_pred hhCCCeEEEEeCCcceeccccCc--c--cc---------chhheeccceeCCC-CCccCcCCEEechHHHHHHHHhhhcC
Confidence 66 7899999999997743222 1 12 22378999999876 442 238999954444444455554
Q ss_pred c
Q 046900 307 F 307 (442)
Q Consensus 307 ~ 307 (442)
+
T Consensus 252 P 252 (403)
T PF06838_consen 252 P 252 (403)
T ss_dssp T
T ss_pred C
Confidence 4
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-08 Score=94.41 Aligned_cols=328 Identities=13% Similarity=0.101 Sum_probs=185.2
Q ss_pred eeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC-CcEEE-ec
Q 046900 50 VIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL-NRIVV-TA 127 (442)
Q Consensus 50 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-~~i~~-t~ 127 (442)
.++|+.+-..+|.+.+++..++..+.... |.+-. +..+.. .-..++-+.+.+.+++.++ ++. .+|++ ..
T Consensus 5 ~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~--g~si~-eisHRs--~~F~~i~~~~~~~Lr~Ll~----~P~~y~Vlfl~G 75 (364)
T PRK12462 5 QLNFSGGPGALPDTVLEQVRQAVVELPET--GLSVL-GMSHRS--SWFSSLLAQAEADLRDLLG----IPDEYGVVFLQG 75 (364)
T ss_pred cceecCCCcCCCHHHHHHHHHHHhccccc--Ccccc-cccccc--HHHHHHHHHHHHHHHHHhC----CCCCCeEEEEec
Confidence 46888887778877777666544332111 11111 122222 2235555666666666655 322 24555 45
Q ss_pred ChHHHHHHHHHhhcCCCCeEE-EcCCCCcC--hHHhHhhhcCcEEEEEecCCCCCC--cCCHHHHHHHHHHHHhcCCcee
Q 046900 128 GATAANELLTFILADPGDALL-VPTPYYPG--FDRDLRWRTGIKIVPIHCDSSNNF--QITPQALEAAYKEAESKDMRVR 202 (442)
Q Consensus 128 G~~~ai~~~~~~l~~~gd~Vl-~~~p~y~~--~~~~~~~~~G~~v~~v~~~~~~~~--~~d~~~l~~~l~~~~~~~~~~~ 202 (442)
|++.++.++...|+.+||.++ +..-++.+ +...++ .+| ++..+......+| .++++.+.. +.+.+
T Consensus 76 ggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~-~~g-~v~~~~~~~~~~~~~~p~~~~~~~--------~~d~~ 145 (364)
T PRK12462 76 GSSLQFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEAS-RVA-AMRVVWDGAASGYRTLPSLAELDW--------DARAP 145 (364)
T ss_pred cHHHHHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHH-hcC-CceEecCcCCCCCCcCCCHHHhcc--------CCCCc
Confidence 599999999999999999665 44444433 334444 356 4444432222222 334555421 12456
Q ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCC
Q 046900 203 GVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGL 282 (442)
Q Consensus 203 ~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~ 282 (442)
.|.+|.-...||+.++ ++.+.++.++|+|-+-+- .+. +..+..+ -++..+.-|.+|.
T Consensus 146 ~v~~t~NETstGv~~~--------~~~~~~~~llvvD~sS~~---~s~-pid~~~~-----------dvi~agsQKnlgP 202 (364)
T PRK12462 146 FRHYVSNETVEGLQFP--------DAAGLPDSPLIADMSSDF---MSR-PFDVEAY-----------GMVYAHAQKNLGP 202 (364)
T ss_pred EEEEccCCCCceEecC--------cccccCCCeEEEEcCchh---hCC-CCChHHc-----------cEEEeeccccCCC
Confidence 7777766678999886 222236899999999773 232 2344333 1556788999998
Q ss_pred CCceeEEEeecCHHHHHHHHH--------------ccccCCCcHHHHHHHHHHhcCchhH-HH--HHHHHHHHHHHHHHH
Q 046900 283 PGFRVGTIYSYNDKVVTTARR--------------MSSFTLISSQTQYLLASMLSNKKFT-EN--YIKTNRERLQKRYQM 345 (442)
Q Consensus 283 ~G~RiG~i~~~~~~~~~~~~~--------------~~~~~~~s~~~q~~~~~~l~~~~~~-~~--~~~~~~~~~~~~~~~ 345 (442)
|| ++.++.+++.+. .... ...+.+.+...-.++...++ |+ ++ -++.+.++-+++.+.
T Consensus 203 ~G--ltvvivs~~al~-~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~---~i~~e~GGl~~~~~r~~~ka~~ 276 (364)
T PRK12462 203 AG--VTVAIIRRALLE-RVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLR---WIRDEIGGVHAMRDINARKAAM 276 (364)
T ss_pred Cc--eEEEEECHHHHh-hccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHH---HHHHhccCHHHHHHHHHHHHHH
Confidence 87 577777444332 2111 11122333444444444443 22 22 356667777788888
Q ss_pred HHHHHHhCC-Ceeec----CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCC
Q 046900 346 IIEGLRSAG-IECLK----GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMS 419 (442)
Q Consensus 346 l~~~L~~~g-~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~ 419 (442)
+.+.+.+.. +-... ..+-+.+.+++++. +...+|.+.+. +.|+.-.-|..- .|.+|+|+- .++
T Consensus 277 ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~------~l~~~f~~~a~-~~gl~~lkGhr~----vgg~Ras~yna~~ 345 (364)
T PRK12462 277 LYATLDALNEVIDCHAHRAARSTMNVAFRFRQP------RLDTLFKEQST-EAGFCGLSGHRS----IGGIRASLYNAVS 345 (364)
T ss_pred HHHHHHhCCCcccCCCChhhcCcceEEEEcCCH------HHHHHHHHHHH-HCCCccccCCcc----cCceEEEcCCCCC
Confidence 888888763 33221 23445566665542 12456666664 449988776542 355999986 447
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046900 420 EQTLEVALKRIHNFMQK 436 (442)
Q Consensus 420 ~e~i~~~l~~l~~~l~~ 436 (442)
.|.++.+++-++++-++
T Consensus 346 ~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 346 EQAVSRLCAFLKDFAIR 362 (364)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777666666665443
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-08 Score=93.12 Aligned_cols=318 Identities=16% Similarity=0.193 Sum_probs=185.5
Q ss_pred cccccCC---CcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHH---HHHHHHHhhcCCC----CeEEEcCCCCcC
Q 046900 87 ENALFQD---YHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATA---ANELLTFILADPG----DALLVPTPYYPG 156 (442)
Q Consensus 87 ~~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~---ai~~~~~~l~~~g----d~Vl~~~p~y~~ 156 (442)
.++-|.| .+|+.++...+.+||.+..| .+.-.+-.-+|++. ++.++-...-..| +.||+|+-.|..
T Consensus 94 ~iHP~~pe~~vqG~l~li~~Lq~~L~~ITG----~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGT 169 (496)
T COG1003 94 NIHPFQPEEQVQGYLELIYELQEWLKEITG----MDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGT 169 (496)
T ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHhcC----CceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCC
Confidence 3444544 37999999999999998765 33333444445443 3333322233333 689999999988
Q ss_pred hHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEE
Q 046900 157 FDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHL 236 (442)
Q Consensus 157 ~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~v 236 (442)
-...+.. .|++|+.|+.+++|. +|+++|++.+.+ ++.++.++|||. .|.- .+.+++|+++..++|..|
T Consensus 170 NPASAam-~G~~VV~V~~~~~G~--VDlddLk~k~~~------~~AalMiTnPsT-~GvF--E~~I~ei~~ivH~~Gg~v 237 (496)
T COG1003 170 NPASAAM-AGFKVVVVKCDENGN--VDLDDLRAKAED------NLAALMITNPST-LGVF--EEDIREICEIVHEAGGQV 237 (496)
T ss_pred ChhhHhh-cCceEEEEecCCCCC--ccHHHHHHHhcc------ceeEEEeccCcc-cccc--hhhHHHHHHHHHHcCCEE
Confidence 8888885 999999999998774 999999999875 888999999875 3443 567999999999999999
Q ss_pred EEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC----CceeEEEeecCHHHHHHHH----------
Q 046900 237 VSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP----GFRVGTIYSYNDKVVTTAR---------- 302 (442)
Q Consensus 237 i~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~----G~RiG~i~~~~~~~~~~~~---------- 302 (442)
..|.+-..-..+-..+ ..+ +--++=-.++|+|+.| |-..|=|.. ...+..++-
T Consensus 238 Y~DGANlNA~vG~~rP---Gd~---------G~DV~HlNLHKTF~iPHGGGGPG~GPvgV-k~~L~pfLP~p~~~~~~~~ 304 (496)
T COG1003 238 YYDGANLNAIVGLARP---GDM---------GFDVVHLNLHKTFCIPHGGGGPGAGPVGV-KAHLAPFLPGPVVYHDVGE 304 (496)
T ss_pred EecCcchhhhhccccc---ccc---------ccceEEeecccccccCCCCCCCCCCceeh-HhhccccCCCCcccCCCcc
Confidence 9999976433322111 111 1112233677877433 223343333 122221110
Q ss_pred ------------HccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC-ceEEEEE
Q 046900 303 ------------RMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGN-AGLFCWM 368 (442)
Q Consensus 303 ------------~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~g~~~~~ 368 (442)
+...+++ |......+-.++.. .-.+-+++..+.---+..++...|+.. .+.+.+.. -.-=+.+
T Consensus 305 y~~~~~~~~s~g~~~a~~G-s~~il~~a~~YI~~--mG~~GL~~ase~AvLNANYia~rL~~~y~~~y~~~~~~~HE~il 381 (496)
T COG1003 305 YRLDYDGKKSIGVSAAPYG-SASILPIAWAYIRM--MGADGLKQASEVAVLNANYIARRLKGYYPVPYTGENRVAHECIL 381 (496)
T ss_pred ccccCCCCccceeeccccC-cchHHHHHHHHHHH--HhHHHHHHHHHHHHHhHHHHHHHhhhcCccccCCCCcceeEEEe
Confidence 0111111 11111111122221 112224444444455677888888763 22222211 0111223
Q ss_pred ecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 369 NLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
+........+. .+.+++++|++. |+.- |--.|..--.+.+-|=.. +.+++++++++++|.++.++.++
T Consensus 382 d~r~l~~~~Gv-~~~DvAKrLlD~-GfHa-PT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~ 450 (496)
T COG1003 382 DARPLKKETGV-RALDVAKRLLDY-GFHA-PTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADA 450 (496)
T ss_pred echHhHhhcCC-cHHHHHHHHHhc-CCCC-CcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 44322221221 478899999887 9874 444554222455666554 23789999999999998776543
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-08 Score=95.81 Aligned_cols=291 Identities=15% Similarity=0.124 Sum_probs=166.0
Q ss_pred CCCcEEEecChHHHHHHHHHhhcCC---C-----CeEEEcCCCCcChHHhHhhhcCcEEEEEecCCC------CCCcCCH
Q 046900 119 DLNRIVVTAGATAANELLTFILADP---G-----DALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSS------NNFQITP 184 (442)
Q Consensus 119 ~~~~i~~t~G~~~ai~~~~~~l~~~---g-----d~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~------~~~~~d~ 184 (442)
+++.|++++++|+|+..++..-.+. + ..|+...-+|.+-...+....+......|.++. ..| -|+
T Consensus 115 ~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~y-nd~ 193 (433)
T KOG1401|consen 115 SAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEY-NDS 193 (433)
T ss_pred CccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeeccc-CCH
Confidence 6889999999999999987654321 1 137777777766433222113333333332210 011 268
Q ss_pred HHHHHHHHHHHhcCCceeEEEEeCCCCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhc
Q 046900 185 QALEAAYKEAESKDMRVRGVLITNPSNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQ 263 (442)
Q Consensus 185 ~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~ 263 (442)
..+++.++.+ ...+.+||+..-..-.|.. .+++-+..|.+.|+++++++|.||+...|...+.. ...++..-
T Consensus 194 t~l~k~~~~h---~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~--~a~e~~~~-- 266 (433)
T KOG1401|consen 194 TALEKLFESH---KGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYG--WAQEYFGV-- 266 (433)
T ss_pred HHHHHHHHhC---CCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchH--HHHHHhCc--
Confidence 8999988863 2235666666446667765 46667999999999999999999999876554432 22222221
Q ss_pred CCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc-----ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 046900 264 YKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS-----SFTLISSQTQYLLASMLSNKKFTENYIKTNRER 338 (442)
Q Consensus 264 ~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~-----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 338 (442)
.+| +.++.|.++ .|+.+|..++ ++.+...+..-. ..++.++++-.++...++...- .++++.....
T Consensus 267 --~PD----I~t~aK~L~-gGlPigA~~v-~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~-~e~~k~vs~~ 337 (433)
T KOG1401|consen 267 --TPD----ITTVAKPLG-GGLPIGATGV-RDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKD-PETLKNVSKI 337 (433)
T ss_pred --CCc----ceeehhhcc-CCceeEEEee-hHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcC-HHHHHHHHHH
Confidence 112 457899998 9999999998 677777765322 2244566666665555442211 2234445555
Q ss_pred HHHHHHHHHHHHHhCCCeeec-CCceEEEEEecCCcccc--cChhhHHH----HHHHHHHcCcEEEeCCCCCCCCCCCEE
Q 046900 339 LQKRYQMIIEGLRSAGIECLK-GNAGLFCWMNLSPLLEE--QTREGELA----LWDSMLHEVKLNISPGSSCHCSEPGWF 411 (442)
Q Consensus 339 ~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~~--~~~~~~~~----l~~~l~~~~gi~v~pg~~f~~~~~~~i 411 (442)
=+..|+.+.+.+.+..-.... -..++++.+.+...... +....... +...++++ |+.++| -+
T Consensus 338 ~k~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p~~~~~d~~~~~~ll~~~~~~~~~~~-gv~i~P---------~~- 406 (433)
T KOG1401|consen 338 GKELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGPVYKFADAAREQGLLILTLGKGLLEE-GVRIAP---------IY- 406 (433)
T ss_pred HHHHHHHHHHHhccCCCceeeeeeeEEEEEEEEeechhhhhhhhhhhhHHHHHHhcccccc-eEEEec---------cc-
Confidence 555566666777654222221 34455655544332110 00000111 11122222 444444 00
Q ss_pred EEEeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 412 RVCFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 412 Rls~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
-+++.. ++|.++++++.+.+.+.+..
T Consensus 407 ~l~~~~-~~E~i~~~l~i~~~~l~~~~ 432 (433)
T KOG1401|consen 407 LLTVEH-TPEVIQRLLTILEKVLSALN 432 (433)
T ss_pred cccccC-cHHHHHHHHHHHHHHHHHhc
Confidence 123333 57889999999998887653
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.1e-09 Score=102.36 Aligned_cols=250 Identities=13% Similarity=0.079 Sum_probs=141.0
Q ss_pred CCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+||+..+. ..+ ..+.+.+.+.+.... ...........+...++++.+.+..+ -.
T Consensus 12 d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~------------~~~~~~~~~~~~~~~~la~~L~~~~p----~~ 75 (339)
T PF00202_consen 12 DVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANK------------LNYVSFSGFTHPEAAELAEKLAELFP----GG 75 (339)
T ss_dssp ETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHH------------CSSCSTTTSEEHHHHHHHHHHHHHSS----TT
T ss_pred ECCCCEEEECCCCccceecCCCccccchhHHHHhhh------------cccccccceeccchhhhhhhhhhccc----cc
Confidence 34456788987543 333 235555555443211 01111122335667778888777542 13
Q ss_pred CCcEEEecChHHHHHHHHHhhc--------CCCCeEEEcCCCCcChHHhHhhh------------cCcEEEEEecCCCCC
Q 046900 120 LNRIVVTAGATAANELLTFILA--------DPGDALLVPTPYYPGFDRDLRWR------------TGIKIVPIHCDSSNN 179 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~------------~G~~v~~v~~~~~~~ 179 (442)
.+.+++++++++|++.+++... .....|+...-+|.+........ ....+..+|.+....
T Consensus 76 ~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 155 (339)
T PF00202_consen 76 LDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAA 155 (339)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHH
T ss_pred cceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccch
Confidence 5689999999999999987765 13368888888887643221110 111334555432100
Q ss_pred ---CcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccH
Q 046900 180 ---FQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSI 255 (442)
Q Consensus 180 ---~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~ 255 (442)
..-..+.+++.+.+.. ..++.++++..-....|.. .+.+-+++|.++|++||+++|.||++..+...|..+ ..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~--~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~-a~ 232 (339)
T PF00202_consen 156 DEEEQACLNALEELIAALN--ADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFF-AS 232 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHH--GGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSS-GH
T ss_pred hhhHHHHHHHHHHHHHhhc--CCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCcc-ce
Confidence 0000122333333322 2356555555334445654 466679999999999999999999999876666533 22
Q ss_pred HHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhc
Q 046900 256 AEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLS 323 (442)
Q Consensus 256 ~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~ 323 (442)
....- .+.++ +++|.++ .|+.+|.+++ .+.+.+.+.. ..+.+..++++..++.+.|+
T Consensus 233 ~~~gv------~PDiv---~~gK~l~-gG~p~sav~~-~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~ 291 (339)
T PF00202_consen 233 EHYGV------DPDIV---TFGKGLG-GGLPISAVLG-SEEIMEAFQPGSHGSTFGGNPLSCAAALATLE 291 (339)
T ss_dssp HHHTS------SSSEE---EEEGGGG-TTSSEEEEEE-EHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHH
T ss_pred ecccc------cCccc---ccccchh-hhhhcccccc-cchhhccccccccccccccchHhhhhhhhHHH
Confidence 22221 12232 4579998 8899999999 5666655432 22334556777766666665
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-07 Score=86.53 Aligned_cols=272 Identities=17% Similarity=0.133 Sum_probs=167.4
Q ss_pred cCCCcEEEecChHHHHHHHHHhhcC--CCCeEEEcCCC-CcC----hHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHH
Q 046900 118 FDLNRIVVTAGATAANELLTFILAD--PGDALLVPTPY-YPG----FDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAA 190 (442)
Q Consensus 118 ~~~~~i~~t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~-y~~----~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~ 190 (442)
..+.+++++++++-.++.++.+.++ +|+.|++++-. |+. ....+.. .|.. + +- .-.+.+++++++
T Consensus 91 A~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~-~~~~---~--~~--~~~~~P~~~~~~ 162 (407)
T COG3844 91 ARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADL-LGIG---Y--DL--EGVIAPRALEEA 162 (407)
T ss_pred CCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhh-hccc---c--cc--eeeeChHHHHHh
Confidence 6789999999999888887766644 58888887543 332 2223332 3322 1 11 112457789988
Q ss_pred HHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcE
Q 046900 191 YKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERV 270 (442)
Q Consensus 191 l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~v 270 (442)
+.+ ++.+++++..+.-||+.+. +.+|-.++.+++++++-|-+|+-..+ +..+... +.-
T Consensus 163 ~~d------d~AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGav----p~~Lh~~---------gaD 220 (407)
T COG3844 163 ITD------DVAVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAV----PVDLHAA---------GAD 220 (407)
T ss_pred hcc------ceEEEEeccccccccceee---HHHHHHHHHhcCceEEeehhcccCCc----ceeeccc---------CCC
Confidence 876 7888888888999999998 77778888899999999999985332 2222111 333
Q ss_pred EEEecCcccCC-CCCceeEEEeecCHHHHHHHHHcc----------------------cc--CCCcHHHHHHHHHHhcCc
Q 046900 271 HIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARRMS----------------------SF--TLISSQTQYLLASMLSNK 325 (442)
Q Consensus 271 i~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~~~----------------------~~--~~~s~~~q~~~~~~l~~~ 325 (442)
+-+++--|.++ -||-..|..+. +........... .+ +..+..+..++...|+-.
T Consensus 221 faigcsyKYLNgGPGapa~l~v~-~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDif 299 (407)
T COG3844 221 FAIGCSYKYLNGGPGAPAGLFVA-PRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIF 299 (407)
T ss_pred eeeeeeceeccCCCCCceeEEec-cccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhh
Confidence 56788888763 35544343333 221111111100 00 111222333333333321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCC----ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEE
Q 046900 326 KFTENYIKTNRERLQKRYQMIIEGLRSA----GIECLKGN----AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNI 397 (442)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v 397 (442)
. +-.+.+.|++--...+++.+.++.. ++++..|. .|-.+.+..|. ..++.+.|.++ ||..
T Consensus 300 a--~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~---------~~~V~qaLi~r-GVig 367 (407)
T COG3844 300 A--DVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPH---------GYQVMQALIDR-GVIG 367 (407)
T ss_pred h--hcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCc---------HHHHHHHHHHc-Cccc
Confidence 1 1125666666666778888877653 55655442 33355555554 67888888777 9873
Q ss_pred eCCCCCCCCCCCEEEEEeecC--CHHHHHHHHHHHHHHHHHHH
Q 046900 398 SPGSSCHCSEPGWFRVCFANM--SEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 398 ~pg~~f~~~~~~~iRls~~~~--~~e~i~~~l~~l~~~l~~~~ 438 (442)
. | ..++-+|+.++.+ +-+++=.+++.|.+++.+..
T Consensus 368 ---D-~--R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~a 404 (407)
T COG3844 368 ---D-F--REPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTLA 404 (407)
T ss_pred ---c-c--cCCCeeeecCccceechhHHHHHHHHHHHHHHhhc
Confidence 2 2 3568899998732 78889999999999998754
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-07 Score=84.96 Aligned_cols=299 Identities=11% Similarity=0.178 Sum_probs=173.7
Q ss_pred CcEEEecChHHHHHHHHHhh---cCCCCeEEEcCCCCcChHHh-Hhhh-----cCc-----EEEEE-ecCC--CCCCcC-
Q 046900 121 NRIVVTAGATAANELLTFIL---ADPGDALLVPTPYYPGFDRD-LRWR-----TGI-----KIVPI-HCDS--SNNFQI- 182 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~l---~~~gd~Vl~~~p~y~~~~~~-~~~~-----~G~-----~v~~v-~~~~--~~~~~~- 182 (442)
+-++++|+++++.+++++.. .+..|.|.++ -.|.+.... +..+ .|. +.+.+ |..+ .+.|..
T Consensus 103 svc~F~NSGSEANDLALRLAR~ftkhqDvItld-HAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~ 181 (452)
T KOG1403|consen 103 SVCFFVNSGSEANDLALRLARNFTKHQDVITLD-HAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDK 181 (452)
T ss_pred eEEEEecCCchhhHHHHHHHHhhcccCceEEEe-chhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccc
Confidence 46889999999999987654 5566755554 444433221 1110 111 22222 1111 011111
Q ss_pred ----------CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHH-HHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 183 ----------TPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSV-LEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 183 ----------d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~-l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
=.+.+++.+.+...++.++.+.+-.+-+.=.|+++|+.. .+++++..+.+|-+.|.||+.-.|..-|..
T Consensus 182 ~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~h 261 (452)
T KOG1403|consen 182 MYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSH 261 (452)
T ss_pred cCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchh
Confidence 135667777665555555544444444556788877665 889999999999999999999886655655
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH-----ccccCCCcHHHHHHHHHHhcCch
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR-----MSSFTLISSQTQYLLASMLSNKK 326 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~-----~~~~~~~s~~~q~~~~~~l~~~~ 326 (442)
++++.-. +-+--+-++.|.+| .|..++.+++ .+++.+++.. +.+ ++.++.+-++..+.++..+
T Consensus 262 yWafq~y---------~fiPDIVtmgKpmG-NGhPVa~Vat-tkeIA~Af~atgv~YFNT-yGGnPVsCAv~laVm~v~e 329 (452)
T KOG1403|consen 262 YWAFQTY---------NFIPDIVTMGKPMG-NGHPVAAVAT-TKEIAQAFHATGVEYFNT-YGGNPVSCAVGLAVMRVCE 329 (452)
T ss_pred hhhhhhh---------ccccchheecccCC-CCCeeeEEec-cHHHHHHhccccceehhc-cCCCchhHHHHHHHHHHHh
Confidence 5443322 22222457899999 9999999998 6777777754 222 4457777776666665322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec--CCceEEEEEecCCccc--ccChhhHHHHHHHHHHcCcEEEeCCCC
Q 046900 327 FTENYIKTNRERLQKRYQMIIEGLRSAGIECLK--GNAGLFCWMNLSPLLE--EQTREGELALWDSMLHEVKLNISPGSS 402 (442)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~gi~v~pg~~ 402 (442)
++.+....++.-+....+...++. ..+++. -..|+|+-+++-..-. ...-..+.-+..+|.+.++|++..-
T Consensus 330 --~E~Lq~ha~~vG~~L~~lL~~~k~-kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaD-- 404 (452)
T KOG1403|consen 330 --DENLQEHAQQVGEKLEVLLRRLKQ-KHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSAD-- 404 (452)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHhh-hccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecC--
Confidence 222333333333333333333332 233333 3567888888743211 1222345667778888889998741
Q ss_pred CCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 403 CHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 403 f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
++..+-+.|-.. +.+++..++++..|.+++.-...
T Consensus 405 --GPh~NilKiKPPmCFneena~e~v~~ld~iLT~mee 440 (452)
T KOG1403|consen 405 --GPHRNILKIKPPMCFNEENADEFVLGLDEILTVMEE 440 (452)
T ss_pred --CCCCceeecCCCcccChhhHHHHHHHHHHHHHHHHH
Confidence 122334444321 22678888888888887775443
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-07 Score=88.63 Aligned_cols=305 Identities=13% Similarity=0.158 Sum_probs=186.2
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh---cC--CC---CeEEEcCCCCcChHHhHhhhcC
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL---AD--PG---DALLVPTPYYPGFDRDLRWRTG 166 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l---~~--~g---d~Vl~~~p~y~~~~~~~~~~~G 166 (442)
.+...+.+++-+++...++.+ +..-=..|.|+++++.+..... .. .| ..++++.-.+..+...++. .+
T Consensus 116 p~~~~~e~~~Vnm~~~L~~~~---~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~y-f~ 191 (491)
T KOG1383|consen 116 PVVRKLEAECVNMIANLFNAP---SDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARY-FE 191 (491)
T ss_pred chhHHHHHHHHHHHHHHhcCC---ccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhh-EE
Confidence 466788888888888776522 2233567888999855544332 11 12 3566666677777777774 89
Q ss_pred cEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHh-cCcEEEEeccCCcC
Q 046900 167 IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATR-KNIHLVSDEIYSGS 245 (442)
Q Consensus 167 ~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~-~~~~vi~De~y~~~ 245 (442)
+++..||+++ +.|.+|+..+.+.+.+ ++..++..-|+.|+|.. +..++|.++..+ +++.+.+|.+-+.|
T Consensus 192 v~l~~V~~~~-~~~~~D~~k~~~~i~e------Nti~lv~~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgF 261 (491)
T KOG1383|consen 192 VELREVPLDE-GDYRVDPGKVVRMIDE------NTIMLVGSLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGF 261 (491)
T ss_pred EEEEeeeccc-cceEecHHHHHHHhcc------ceEEEEEEcCCCCccch---hhHHHHHHHHHHHhCCceeecccCccc
Confidence 9999999986 6799999999999887 89999999999999987 558888888878 99999999999887
Q ss_pred CCC-CCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH---------cccc-CCCc---
Q 046900 246 AFS-SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR---------MSSF-TLIS--- 311 (442)
Q Consensus 246 ~~~-~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~---------~~~~-~~~s--- 311 (442)
+-. +.. ....++ +..+...-.-.+-+| +|+.--..||++-.++.+...--. +.++ ...|
T Consensus 262 i~p~~~~--~~~~fd----Fr~p~V~Sisa~~HK-YGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g 334 (491)
T KOG1383|consen 262 INPAGYL--NEEEFD----FRVPGVTSISADGHK-YGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPG 334 (491)
T ss_pred ccccccc--Cccccc----cCCCCceeEeeccce-eeeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCcc
Confidence 742 110 000111 111122222235566 444444479998765544321100 1111 1112
Q ss_pred --HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC-CceEEEEEecCCcccccChhhHHHHHH
Q 046900 312 --SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKG-NAGLFCWMNLSPLLEEQTREGELALWD 387 (442)
Q Consensus 312 --~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~ 387 (442)
...|++..--+...+ ..+..+.+.+....+.+.+++. ++.+... .-. |+...-.. .+..++.+
T Consensus 335 ~~va~~wa~~~~lG~eG-----Y~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs-~~~~~s~~-------~~i~elsd 401 (491)
T KOG1383|consen 335 SQVAAQWAALMSLGEEG-----YRENTQNIVETARKLREGIENIKGIKIVGKPLVS-FILFGSND-------VNIFELSD 401 (491)
T ss_pred cHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHhhhccccceecCCCcEE-EEEccCCc-------cchhhhhH
Confidence 233443333333333 3455666778888888999886 6766553 333 33222221 13566777
Q ss_pred HHHHcCcEEEeCCCCCCCCCCCEEEEEee--cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 388 SMLHEVKLNISPGSSCHCSEPGWFRVCFA--NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 388 ~l~~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
.|.+. |..+.. -.|. ..+-+++. ...++--++++.-|+++++++..
T Consensus 402 ~l~~~-GW~lna-lq~P----~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~ 449 (491)
T KOG1383|consen 402 LLRKK-GWILNA-LQFP----AAIHICVTRVHAREDVADRFVADIRKVVEELKS 449 (491)
T ss_pred HHHhc-CcCccc-cCCC----CceEEEEEeeeccHHHHHHHHHHHHHHHHHHHh
Confidence 76555 887653 3332 23444443 22455568888888888887654
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-06 Score=91.11 Aligned_cols=285 Identities=13% Similarity=0.148 Sum_probs=168.8
Q ss_pred ccccCCCc-----chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc-C--CCCeEEEcCCCCcChHH
Q 046900 88 NALFQDYH-----GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA-D--PGDALLVPTPYYPGFDR 159 (442)
Q Consensus 88 ~~~Y~~~~-----g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~-~--~gd~Vl~~~p~y~~~~~ 159 (442)
...|.|++ |..+..=.+...+.+..| ++..|.-+..+++.+.++++.+.. . ++++|++++-.||.+..
T Consensus 93 ~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtG----m~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~ 168 (939)
T TIGR00461 93 YTAYTPYQPEISQGRLEALLNFQTVVSDLTG----LPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKS 168 (939)
T ss_pred hhcCCCCChhhhhHHHHHHHHHHHHHHHHHC----CChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHH
Confidence 34566654 433333233333444434 677788888888888887766542 2 34799999999999876
Q ss_pred hHhh---hcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEE
Q 046900 160 DLRW---RTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHL 236 (442)
Q Consensus 160 ~~~~---~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~v 236 (442)
.++. ..|++++.++ +++|++.+ ++.++++.+|+. .|.+. ++++|++++++++.++
T Consensus 169 v~~t~a~~~g~~v~~~~----------~~~l~~~~--------~~~~v~~q~Pn~-~G~ie---d~~~i~~~~h~~gal~ 226 (939)
T TIGR00461 169 VLHTRAKPFGIEVIVVD----------CSDIKKAV--------DVFGCLLQYPAT-DGSIL---DYKQLIDALHSHKSLV 226 (939)
T ss_pred HHHHHHHhcCcEEEEEc----------HHHHhhcC--------CEEEEEEECCCC-CeEEe---cHHHHHHHHHHcCCEE
Confidence 6552 3788888764 34444332 456778888875 78875 4889999999999999
Q ss_pred EEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCC----CCceeEEEeecCHHHHHHHH-H--------
Q 046900 237 VSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGL----PGFRVGTIYSYNDKVVTTAR-R-------- 303 (442)
Q Consensus 237 i~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~----~G~RiG~i~~~~~~~~~~~~-~-------- 303 (442)
+++---..+. -..+..++..+ |+++ .+|.||+ .|--.|++.+. +.+...+- +
T Consensus 227 ~~~ad~~al~----ll~~Pge~GaD---------i~vg-~~q~fg~p~g~GGP~aG~~a~~-~~l~r~lPgrivG~s~D~ 291 (939)
T TIGR00461 227 SVAADLMALT----LLTPPGHYGAD---------IVLG-SSQRFGVPMGYGGPHAAFFAVK-DEYNRKMPGRIVGVSKDA 291 (939)
T ss_pred EEEechHHhC----CcCCHHHcCCc---------EEee-CCCccCCCCCCCCCceeeeeec-HhhHhhCCCCceeEEecC
Confidence 9843322211 12333334332 4444 3444443 25457887773 33332210 0
Q ss_pred -------------------ccccC-CCcHHHHHHHHHH--hcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC
Q 046900 304 -------------------MSSFT-LISSQTQYLLASM--LSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN 361 (442)
Q Consensus 304 -------------------~~~~~-~~s~~~q~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 361 (442)
..... .++.....++.+. +.- +..+-+++..++...+..++.+.|.+.|+++..+
T Consensus 292 ~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~--~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~- 368 (939)
T TIGR00461 292 LGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVY--HGPKGLKNIARRIHSLTSILANGLENDPHELINK- 368 (939)
T ss_pred CCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-
Confidence 00011 1111122221111 111 1134477778888888899999999989887654
Q ss_pred ceEE--EEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHH
Q 046900 362 AGLF--CWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIH 431 (442)
Q Consensus 362 ~g~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~ 431 (442)
.+| +.++++. . ++.++.+.++++ ||.++.. ..+.+++|+.. -++++++.+++.+.
T Consensus 369 -~fF~~~~v~~~~-~------~~~~i~~~~~~~-gi~l~~~------~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 369 -TWFDTLTVKVGN-G------ISSELLKAAEEF-NINLRAV------DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred -CccceEEEEeCC-C------CHHHHHHHHHHC-CCeeeec------CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 334 2334431 0 266788888777 9997752 23579999972 28899999999885
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-06 Score=83.28 Aligned_cols=178 Identities=18% Similarity=0.174 Sum_probs=124.5
Q ss_pred CCCcEEEecChHHHHHHHHHhhcCCCCeEE-----EcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHH
Q 046900 119 DLNRIVVTAGATAANELLTFILADPGDALL-----VPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKE 193 (442)
Q Consensus 119 ~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl-----~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~ 193 (442)
..+.++++|..+.++.++..++..++..|+ ++ ++.+.+.+.++. .|++++.+-.... -...+++.+|.+
T Consensus 82 ~aea~~ivnnn~aAVll~~~al~~~~EvVis~g~lV~-gg~~~v~d~~~~-aG~~l~EvG~tn~----t~~~d~~~AIne 155 (395)
T COG1921 82 GAEAAAIVNNNAAAVLLTLNALAEGKEVVVSRGELVE-GGAFRVPDIIRL-AGAKLVEVGTTNR----THLKDYELAINE 155 (395)
T ss_pred chhheeeECCcHHHHHHHHhhhccCCeEEEEcccccc-CCCCChhHHHHH-cCCEEEEecccCc----CCHHHHHHHhcc
Confidence 368899999999999999999987555443 23 577889999995 9999999875432 467899999987
Q ss_pred HHhcCCceeEEEEeCC-CCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEE
Q 046900 194 AESKDMRVRGVLITNP-SNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHI 272 (442)
Q Consensus 194 ~~~~~~~~~~v~l~~P-~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~ 272 (442)
++++++-+.- |.+--..++ +++++++|+++|+++++|.+-+..+-... .+...... +--++
T Consensus 156 ------~ta~llkV~s~~~~f~~~l~---~~~l~~ia~~~~lpvivD~aSg~~v~~e~---~l~~~la~------GaDLV 217 (395)
T COG1921 156 ------NTALLLKVHSSNYGFTGMLS---EEELVEIAHEKGLPVIVDLASGALVDKEP---DLREALAL------GADLV 217 (395)
T ss_pred ------CCeeEEEEeecccccccccc---HHHHHHHHHHcCCCEEEecCCcccccccc---chhHHHhc------CCCEE
Confidence 7777766544 433222344 66788888899999999999887653222 23333332 34477
Q ss_pred EecCcccCCCCCceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhc
Q 046900 273 VYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLS 323 (442)
Q Consensus 273 ~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~ 323 (442)
+.|-.|.|| |.+.|.+++ .++++..+++... .+-+..+...++.+.|+
T Consensus 218 ~~SgdKllg--GPqaGii~G-kKelI~~lq~~~l~Ralrv~K~tla~l~~aLe 267 (395)
T COG1921 218 SFSGDKLLG--GPQAGIIVG-KKELIEKLQSHPLKRALRVDKETLAALEAALE 267 (395)
T ss_pred EEecchhcC--CCccceEec-hHHHHHHHHhhhhhhhhhcCcHhHHHHHHHHH
Confidence 899999885 778999998 5666666554322 24556666666555554
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.1e-06 Score=78.24 Aligned_cols=282 Identities=17% Similarity=0.161 Sum_probs=160.3
Q ss_pred cCCC----cEEEecChHHHHHHHHHhhcCCCCeEEE-cCCC--CcC--hHHhHhhhcC----cEEEEEecCCCCCCcCCH
Q 046900 118 FDLN----RIVVTAGATAANELLTFILADPGDALLV-PTPY--YPG--FDRDLRWRTG----IKIVPIHCDSSNNFQITP 184 (442)
Q Consensus 118 ~~~~----~i~~t~G~~~ai~~~~~~l~~~gd~Vl~-~~p~--y~~--~~~~~~~~~G----~~v~~v~~~~~~~~~~d~ 184 (442)
++|+ ||-.-+| +.|+..+..+++.|+|+|.- .-|. |-. |...-+.-.. ++-.++.++++.+ -+|.
T Consensus 101 ldp~kWGVNVQp~SG-SPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG-~IDY 178 (477)
T KOG2467|consen 101 LDPEKWGVNVQPYSG-SPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTG-YIDY 178 (477)
T ss_pred CCHHHCceeeccCCC-CchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCC-ceeh
Confidence 5554 4544455 66788899999999999884 3332 211 1111110011 1222444554433 4689
Q ss_pred HHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHH-HHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhc
Q 046900 185 QALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRS-VLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQ 263 (442)
Q Consensus 185 ~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~-~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~ 263 (442)
|.||+....+ ++|+|+- .+..|++. +..++.++|.+.+.+++.|-+|..........++..++..
T Consensus 179 D~Le~~A~~f-----rPk~iia------G~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~D--- 244 (477)
T KOG2467|consen 179 DKLEKTATLF-----RPKLIIA------GTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCD--- 244 (477)
T ss_pred HHHHHHHHhc-----CCcEEEe------ccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccc---
Confidence 9999988775 7776553 34455544 2556666777889999999998753333223344444432
Q ss_pred CCCCCcEEEEecCcccCCCCCceeEEEeecC-----------H---HHHHHHHHcccc---CCCcHHHHHHHHHHhc---
Q 046900 264 YKDSERVHIVYSLSKDLGLPGFRVGTIYSYN-----------D---KVVTTARRMSSF---TLISSQTQYLLASMLS--- 323 (442)
Q Consensus 264 ~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~-----------~---~~~~~~~~~~~~---~~~s~~~q~~~~~~l~--- 323 (442)
|+..+.+|.+ -|-|.|.|.-.. + .+.+.++..--+ ++.......+++-+|.
T Consensus 245 -------iVTTTTHKsL--RGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~ 315 (477)
T KOG2467|consen 245 -------IVTTTTHKSL--RGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAM 315 (477)
T ss_pred -------eeeccccccc--cCCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhC
Confidence 6788999976 788989887521 1 122222221111 2222223333333333
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC-CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCC
Q 046900 324 NKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKG-NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSS 402 (442)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~ 402 (442)
.+++ ++..++..++.+.|.+.|.+.|.+.... .-+-.+.+++....- +..-+++.++.-+|.+.--..
T Consensus 316 tpef-----k~Yq~qV~~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~------dGarvE~vle~~~I~~NKNtv 384 (477)
T KOG2467|consen 316 TPEF-----KEYQKQVLKNAKALASALISRGYKLVTGGTDNHLVLVDLRPKGV------DGARVEKVLELCHIALNKNTV 384 (477)
T ss_pred CHHH-----HHHHHHHHHHHHHHHHHHHHcCceEecCCccceEEEEeccccCC------chHHHHHHHHHhhhhhcCCcC
Confidence 3343 5566777888899999999999888653 333455667765321 123344555554666543333
Q ss_pred CCC---CCCCEEEEEeecC-----CHHHHHHHHHHHHHHHH
Q 046900 403 CHC---SEPGWFRVCFANM-----SEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 403 f~~---~~~~~iRls~~~~-----~~e~i~~~l~~l~~~l~ 435 (442)
++. -.++.+||+...+ -++++++..+-|.+.++
T Consensus 385 pGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 385 PGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred CCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 321 2356799986533 46777777776666544
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.2e-06 Score=79.51 Aligned_cols=299 Identities=14% Similarity=0.144 Sum_probs=158.3
Q ss_pred CCcEEEecChHH-HHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCC-CCCcCCHHHHHHHHHHHH
Q 046900 120 LNRIVVTAGATA-ANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSS-NNFQITPQALEAAYKEAE 195 (442)
Q Consensus 120 ~~~i~~t~G~~~-ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~-~~~~~d~~~l~~~l~~~~ 195 (442)
....++.+.+|. .+.+.+.++. ..++.|+.+.-.+..-..++. ..|++++.||...+ +....|.+.+++.+++.
T Consensus 74 ~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~-~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~- 151 (389)
T PF05889_consen 74 VKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIE-RAGLEPVVVENVLEGDELITDLEAIEAKIEEL- 151 (389)
T ss_dssp HCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHH-HTT-EEEEE-EEEETTEEEEHHHHHHHHHHHH-
T ss_pred ccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHH-hcCCeEEEeeccCCCCeeeccHHHHHHHHHHh-
Confidence 356777776554 3444455553 456888887665544445555 38999999985433 23455788999988653
Q ss_pred hcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEec
Q 046900 196 SKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275 (442)
Q Consensus 196 ~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S 275 (442)
|....+.+++.++--.|.. .+++++|+++|++||++.|+..+|+- -. ..-+..+...... ...-+++.|
T Consensus 152 --G~~~iLcvltttscfapr~--~D~i~~IakiC~~~~IPhlvNnAYgv---Q~--~~~~~~i~~a~~~--GRvda~vqS 220 (389)
T PF05889_consen 152 --GADNILCVLTTTSCFAPRL--PDDIEEIAKICKEYDIPHLVNNAYGV---QS--SKCMHLIQQAWRV--GRVDAFVQS 220 (389)
T ss_dssp --CGGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTT---T---HHHHHHHHHHHHH--STCSEEEEE
T ss_pred --CCCCeEEEEEecCccCCCC--CccHHHHHHHHHHcCCceEEccchhh---hH--HHHHHHHHHHHhc--CCcceeeee
Confidence 4455667777665444443 34699999999999999999999983 11 1111111111000 122256789
Q ss_pred CcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 276 LSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASML--SNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 276 ~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
.-|.| +-+..-+-+.++++.....+.....--...++.......++ ....| ..-+.++.+.+...++.+.+.-++.
T Consensus 221 ~dkNF-~VPvGgai~As~~~~~i~~vs~~YpGRas~sp~ld~~itLl~LG~~g~-~~ll~~r~~~f~~l~erl~~~aee~ 298 (389)
T PF05889_consen 221 TDKNF-MVPVGGAIMASFDPSGILAVSKEYPGRASASPSLDLFITLLSLGCTGY-GALLKERKASFPYLKERLKKWAEEV 298 (389)
T ss_dssp HHHHH-CEESSHEEEEESSHHHHHHHHHTSHSHBTSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCE-EecCCCcEEEecCHHHHHHHHHHhhhhhhcccchHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998 56665667777777666665543332122233333333333 22222 2333344444443344443333444
Q ss_pred CCeeec-CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEE----EeCCCCCCC-----CCCCEEEEEee-cCCHHH
Q 046900 354 GIECLK-GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLN----ISPGSSCHC-----SEPGWFRVCFA-NMSEQT 422 (442)
Q Consensus 354 g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~----v~pg~~f~~-----~~~~~iRls~~-~~~~e~ 422 (442)
+-.+.. |.-..-+.+.++....... .+...|...|..+ ||. |.|+..+.. ..-.|+-++.+ .+++||
T Consensus 299 ~e~ll~~p~N~is~a~tl~~l~~~~~-k~~~~lgs~Lf~R-~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~ee 376 (389)
T PF05889_consen 299 GERLLETPRNHISMAFTLDTLYEISQ-KDGTFLGSMLFKR-GVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTREE 376 (389)
T ss_dssp TEEBSSSTT-SSEEEEE-TTCCTCCS-SHHHHHHHHHHHT-TEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HHH
T ss_pred hhhhcCCCCCCeeEEEECccchhhcc-chhhhHHHHHHhC-CcccceeeccCCCcccccCCCCchHHHHHHHHhCCCHHH
Confidence 533322 3333345556654322111 2456777777666 664 333322211 01257777433 559999
Q ss_pred HHHHHHHHHHHHH
Q 046900 423 LEVALKRIHNFMQ 435 (442)
Q Consensus 423 i~~~l~~l~~~l~ 435 (442)
++.++++|.++++
T Consensus 377 vd~~v~rL~k~i~ 389 (389)
T PF05889_consen 377 VDYFVKRLDKIIK 389 (389)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999875
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-06 Score=81.25 Aligned_cols=320 Identities=16% Similarity=0.212 Sum_probs=175.5
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC--C-----C-----CeEE-EcCCCCcChHHhH
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD--P-----G-----DALL-VPTPYYPGFDRDL 161 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~--~-----g-----d~Vl-~~~p~y~~~~~~~ 161 (442)
.+..-..+.+-..+.+..|+. ...|.|+--.|+...+..+.-+--+ | | +-|+ +.+-+|.++..++
T Consensus 137 PvF~lmE~~vl~km~~ivGw~--~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaA 214 (510)
T KOG0629|consen 137 PVFVLMEEEVLAKMREIVGWE--EGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAA 214 (510)
T ss_pred ceEEeehHHHHHHHHHHhCCC--CCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHH
Confidence 343344445555555555532 2245555444455444443322100 1 1 3444 3456777777777
Q ss_pred hhhcC---cEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEE
Q 046900 162 RWRTG---IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVS 238 (442)
Q Consensus 162 ~~~~G---~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~ 238 (442)
.. +| -+++.|+.++.| ++++++||+.|.+...+|..+-.|-.+.-+.-.|.. +.+..|+++|++|++|+.+
T Consensus 215 a~-lg~gtd~c~~v~t~e~G--km~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAF---DdL~~iadiC~k~~lWmHv 288 (510)
T KOG0629|consen 215 AF-LGLGTDHCIKVKTDERG--KMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAF---DDLNGIADICEKHKLWMHV 288 (510)
T ss_pred HH-hccCCceeEEecccccC--ccchHHHHHHHHHHHhcCCCCeEEEecCCceeeecc---CcHHHHHHHHHhcCEEEEe
Confidence 74 77 688899988765 589999999998876655444222222223444555 4588999999999999999
Q ss_pred eccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc--------CCC
Q 046900 239 DEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--------TLI 310 (442)
Q Consensus 239 De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--------~~~ 310 (442)
|.+|+...+-+..+........ +-+ -+.++.+|.+| +.+.++..+...+-+.+.+++.... +-+
T Consensus 289 DAAwGGglLmS~k~R~kl~Gie------ra~-SvtwnpHK~~g-aplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~Ydv 360 (510)
T KOG0629|consen 289 DAAWGGGLLMSRKHRHKLTGIE------RAN-SVTWNPHKLMG-APLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDV 360 (510)
T ss_pred ecccccccccChhhHhhccCcc------ccC-ceeecHHHhhc-CcchhhHHHHHHHHHHHhhcccchhhhhccCceeec
Confidence 9999863322222211111111 112 24579999998 7799998887555555444332111 111
Q ss_pred c-----HHHHHH-----H--HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCee-ec--CCceEEEEEecCCcc
Q 046900 311 S-----SQTQYL-----L--ASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIEC-LK--GNAGLFCWMNLSPLL 374 (442)
Q Consensus 311 s-----~~~q~~-----~--~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~--~~~g~~~~~~~~~~~ 374 (442)
| -..|-. . =-+++..++ +-.++..+.+-+..+++.+.|++. |+.. .. |+...+.+--+|..+
T Consensus 361 S~DTgdK~iQCGRh~D~FKlWlmwkaKG~--~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~l 438 (510)
T KOG0629|consen 361 SYDTGDKAIQCGRHVDVFKLWLMWKAKGT--QGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSL 438 (510)
T ss_pred ccccccchhhcCccccHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHh
Confidence 1 111211 1 111222111 123455677778889999999887 3332 22 553333333344332
Q ss_pred cccC--hh-------hHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecC--CHHHHHHHHHHHHHHH
Q 046900 375 EEQT--RE-------GELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANM--SEQTLEVALKRIHNFM 434 (442)
Q Consensus 375 ~~~~--~~-------~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~--~~e~i~~~l~~l~~~l 434 (442)
.... .+ -+..+...++++ |....- ...-...+.++|+.+++. +.++++-+++.|..+-
T Consensus 439 R~~~~~~e~~~rL~kVaPkIK~~Mm~~-Gt~Mi~-YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlg 507 (510)
T KOG0629|consen 439 RGWQENPERDSRLVKVAPKIKERMMKK-GTTMIG-YQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLG 507 (510)
T ss_pred ccCcccchhhhHHHhhCcHHHHHHHhc-cceeeE-ecccccccchhheecccchhhhhhHHHHHHHHHHhc
Confidence 2111 01 123445666676 655442 111113357899988743 7788888888777653
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-06 Score=76.86 Aligned_cols=185 Identities=22% Similarity=0.243 Sum_probs=120.6
Q ss_pred CCcccccCC-CcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCC-CCcChHHh--
Q 046900 85 FRENALFQD-YHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTP-YYPGFDRD-- 160 (442)
Q Consensus 85 ~~~~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p-~y~~~~~~-- 160 (442)
+....+|+. .-|-..|....|+-++.. ...-..-+.+| +.||..++..+++|||..+...- -|....+.
T Consensus 54 f~~stGYGydD~GRdtLe~vyA~vf~aE------~a~VRpq~isG-THAI~~aLfg~LRpgDell~i~G~PYDTLeevIG 126 (416)
T COG4100 54 FTGSTGYGYDDLGRDTLERVYAQVFGAE------AALVRPQIISG-THAIACALFGILRPGDELLYITGSPYDTLEEVIG 126 (416)
T ss_pred cCCCCCCCccccchhHHHHHHHHHhccc------cceeeeeeecc-hhHHHHHHHhccCCCCeEEEecCCcchhHHHHhc
Confidence 444455542 246666777777766521 11223444554 78899999999999999885432 24333332
Q ss_pred --------HhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeC-CCCCCCcCCCHHHHHHHHHHHHh
Q 046900 161 --------LRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITN-PSNPLGATIQRSVLEELLDFATR 231 (442)
Q Consensus 161 --------~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~-P~NPtG~~~~~~~l~~l~~~~~~ 231 (442)
++. .|++...+|+..++ .+|.+.+...+++ ++|+|.+.- ...----.++.+++++++++.++
T Consensus 127 ~rg~~~gSL~d-fgi~Y~~v~Lt~~g--kiD~~~v~~~i~~------~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~ 197 (416)
T COG4100 127 LRGEGQGSLKD-FGIKYKAVPLTADG--KIDIQAVKTAISD------RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKE 197 (416)
T ss_pred cCCCCcccHHH-hCcceeecccccCC--cccHHHHHHhcCc------cceEEEEEeccCcCCCCcccHHHHHHHHHHHHh
Confidence 342 68888899988766 5999999999986 889887763 33322234788899999999876
Q ss_pred c--CcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce--eEEEeecCHHHHHH
Q 046900 232 K--NIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR--VGTIYSYNDKVVTT 300 (442)
Q Consensus 232 ~--~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R--iG~i~~~~~~~~~~ 300 (442)
- |+++++|.+|++|+-.-.+.. .. --++.+|+-|.-| .|+- .||+.+. +.+.+.
T Consensus 198 inpn~ivFVDNCYGEFvE~~EPt~----vG---------aDliAGSLIKNpG-GgiaktGGYiaGk-~~~ve~ 255 (416)
T COG4100 198 INPNVIVFVDNCYGEFVEEKEPTH----VG---------ADLIAGSLIKNPG-GGIAKTGGYIAGK-AELVEA 255 (416)
T ss_pred cCCCEEEEEeccchhhhhccCccc----cc---------hhhhccceeeCCC-Cceeeccceeech-HHHHHh
Confidence 5 799999999999874332211 11 1256788988765 4431 2788884 444444
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-05 Score=75.67 Aligned_cols=282 Identities=19% Similarity=0.237 Sum_probs=142.8
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh---cCCCCeEEEcCCCCcChHHhHhh---hcCcE
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL---ADPGDALLVPTPYYPGFDRDLRW---RTGIK 168 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l---~~~gd~Vl~~~p~y~~~~~~~~~---~~G~~ 168 (442)
+|..+..-.+...+.+..| ++..|.=+-.|++.+-+.+..+. -+.+++|+++.-.|+.+...++. ..|++
T Consensus 106 QG~Lq~lfe~Qs~i~eLTG----mdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~ 181 (429)
T PF02347_consen 106 QGRLQALFEYQSMICELTG----MDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIE 181 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHT----SSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEE
T ss_pred HHHHHHHHHHHHHHHHhhC----CCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeE
Confidence 4554444445555655555 44444556667666665554333 23346999999999998875543 27899
Q ss_pred EEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCC
Q 046900 169 IVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS 248 (442)
Q Consensus 169 v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~ 248 (442)
++.++.++.+. .| +.++.+|++.+||. .|.+-+ +++|.++++++|.++++ .+.- +...
T Consensus 182 iv~~~~~~~~~--~d--------------~~~~a~v~vq~Pn~-~G~~ed---~~~i~~~~h~~gal~~~-~ad~-~aL~ 239 (429)
T PF02347_consen 182 IVEVPLDEDGT--TD--------------DDDTAAVMVQNPNT-FGVFED---IKEIADIAHAAGALVIV-GADP-NALG 239 (429)
T ss_dssp EEEE-BBTTCS--B---------------STTEEEEEEESS-T-TSB--T---HHHHHHHHHHTT-EEEE-CGGC-CGCC
T ss_pred EEEecccccCC--cc--------------ccCeEEEEeecCCC-CceEee---HHHHHHHHHHcCCEEEE-ecCH-HHHh
Confidence 99999876542 22 13888999999986 677744 88999999999988876 4432 1222
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEecCcccCC----CCCceeEEEeecCHHHHHH------------------------
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVYSLSKDLG----LPGFRVGTIYSYNDKVVTT------------------------ 300 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g----~~G~RiG~i~~~~~~~~~~------------------------ 300 (442)
. ..+..++.. -|++++ +|.|| ..|--.|++.+..+.++..
T Consensus 240 ~--l~~Pge~GA---------DI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtR 307 (429)
T PF02347_consen 240 G--LKSPGEYGA---------DIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTR 307 (429)
T ss_dssp T--C--GGGGT----------SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGG
T ss_pred C--cCChhhcCc---------cEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccc
Confidence 2 222223322 255664 66664 3355578888743322211
Q ss_pred ---HHHcccc-CCCcHHHHHH--HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEEEEecCCc
Q 046900 301 ---ARRMSSF-TLISSQTQYL--LASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSPL 373 (442)
Q Consensus 301 ---~~~~~~~-~~~s~~~q~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~ 373 (442)
+++.... +.++..+..+ +..++.. +-.+-+++..+....+..++.+.|.+. +..+..+.---++....+.
T Consensus 308 EQHIrReKAtSNIctnqaL~A~~a~~Yl~~--~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~f~e~v~~~~~~- 384 (429)
T PF02347_consen 308 EQHIRREKATSNICTNQALLALAAAIYLAY--LGPEGLREIAERIHLNAHYLAERLKKIYGLPFDNPFFFEFVVVFSKD- 384 (429)
T ss_dssp TCHHHGCCSTT---SS-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSSSBSSEEEEESS--
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCceeeeeecCCc-
Confidence 1111111 1122222222 2222221 224568888999999999999999985 3333322211122222221
Q ss_pred ccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHH
Q 046900 374 LEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRI 430 (442)
Q Consensus 374 ~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l 430 (442)
....++.++.... |+.... ...+.+-+|+.. -++++|+++++.+
T Consensus 385 ------~~~~~l~~~~~~~-gl~~~~------~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 385 ------KEVEELLKRGIEG-GLNLRY------PDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp ------HHHHHHHHTT-----EEEGG------G-SSEEEEE--TT--HHHHHHHHH--
T ss_pred ------HHHHHHHHHHHhc-CCCccc------cCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 1233455555444 543321 234578888862 2788888887754
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00012 Score=70.04 Aligned_cols=312 Identities=15% Similarity=0.185 Sum_probs=169.2
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCcc-----CC-CcEEEecChHHHHHHHHHhh-------cCCC-----------C-eE
Q 046900 93 DYHGLKSFRQAMASFMEQIRGGRAKF-----DL-NRIVVTAGATAANELLTFIL-------ADPG-----------D-AL 147 (442)
Q Consensus 93 ~~~g~~~lr~~ia~~l~~~~~~~~~~-----~~-~~i~~t~G~~~ai~~~~~~l-------~~~g-----------d-~V 147 (442)
.....++|.-.+.+|+.+..+.+... .. --|+-++ ++++...++.+- .+.+ + .+
T Consensus 107 ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~t-ases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~ 185 (511)
T KOG0628|consen 107 SSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGT-ASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVA 185 (511)
T ss_pred cCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecC-cchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheE
Confidence 33456899999999999987643111 11 1233333 334433332221 1111 2 34
Q ss_pred EEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHH
Q 046900 148 LVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLD 227 (442)
Q Consensus 148 l~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~ 227 (442)
...+.++.++..++.. .|+++..++.++ +|.++.+.|.+++++...+|--+ .+++.+- .-|| +..-+++.+|..
T Consensus 186 Y~SDqahssveka~~i-~~VklR~l~td~--n~~mr~~~L~~AIe~D~arGlIP-f~v~at~-GTT~-~ca~D~l~elg~ 259 (511)
T KOG0628|consen 186 YCSDQAHSSVEKACLI-AGVKLRALPTDE--NFGMRGDTLRKAIEEDIARGLIP-FFVCATL-GTTS-SCAFDELEELGP 259 (511)
T ss_pred EecCcccchHHHhHhh-cceeEEEeeccc--CcCCCHHHHHHHHHHHHhCCCcc-EEEEEee-cCcc-ccccccHHHhcc
Confidence 5677888999988884 899999999876 89999999999999876655433 3333222 2233 334578999999
Q ss_pred HHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEe------------ecCH
Q 046900 228 FATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIY------------SYND 295 (442)
Q Consensus 228 ~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~------------~~~~ 295 (442)
+|+++++|+.+|.+|+...+.-+.+..+..-... -+. +-...||.+ +.-+-+.-+- +++-
T Consensus 260 Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~-----aDS--fn~n~hK~~-~vnfDCs~lWvkd~~~~~~~~~vdp~ 331 (511)
T KOG0628|consen 260 VCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEY-----ADS--FNFNPHKWL-LVNFDCSPLWVKDGTKLSRAFNVDPL 331 (511)
T ss_pred hhhhcCEEEEeehhhccccccCHHHHHHhhcchh-----hcc--ccCChhhee-EEeeeeecceeecCceeeeeeecChH
Confidence 9999999999999999765543333332221110 000 112335543 2222222111 1111
Q ss_pred HHHHHH-HHcccc--CCCc------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeeec-C
Q 046900 296 KVVTTA-RRMSSF--TLIS------SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-----GIECLK-G 360 (442)
Q Consensus 296 ~~~~~~-~~~~~~--~~~s------~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~-~ 360 (442)
.+.... .....+ |.++ ++-.+.....+.... +++++ ++.-.|.+.++++ -+++.. .
T Consensus 332 yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~-lq~~i--------R~h~~La~~fe~lv~~d~~FE~~~~~ 402 (511)
T KOG0628|consen 332 YLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVEN-LQNYI--------REHVRLAKEFETLVRADPRFEIVNKR 402 (511)
T ss_pred hhcchhhccCCCccccccccccchhhHHHHHHHHHHhHHH-HHHHH--------HHHHHHHHHHHHHhhcCCcceeeccc
Confidence 111111 111111 2211 222222222222211 12222 2222333333332 355543 3
Q ss_pred CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecC--CHHHHHHHHHHHHHHHHHH
Q 046900 361 NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANM--SEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 361 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~--~~e~i~~~l~~l~~~l~~~ 437 (442)
.-| .+.+++... ...-.++..++-....|.+.|.+. .+.-.+|++++.. ++++++++.+.|.+....+
T Consensus 403 ~lg-LvcFRlk~~-----N~~ne~Ll~~in~~g~i~l~~~~l---~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l 472 (511)
T KOG0628|consen 403 ILG-LVCFRLKGD-----NEINEALLNRLNSSGRIHLVPASL---HGKFVLRFAVCSPLTNESDIDEAWKIIFEAADEL 472 (511)
T ss_pred ccc-eeEEeecCC-----cHHHHHHHHHHHhcCcEEEEEeee---cceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Confidence 444 333455442 123567777877777799998664 3345689988732 7889999999998877663
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00047 Score=65.73 Aligned_cols=270 Identities=19% Similarity=0.244 Sum_probs=154.8
Q ss_pred cCCCcEEEecChHHHHHHHHHhh---cCCCCeEEEcCCCCcChHHhHhhh---cCcEEEEEecCCCCCCcCCHHHHHHHH
Q 046900 118 FDLNRIVVTAGATAANELLTFIL---ADPGDALLVPTPYYPGFDRDLRWR---TGIKIVPIHCDSSNNFQITPQALEAAY 191 (442)
Q Consensus 118 ~~~~~i~~t~G~~~ai~~~~~~l---~~~gd~Vl~~~p~y~~~~~~~~~~---~G~~v~~v~~~~~~~~~~d~~~l~~~l 191 (442)
++-.|-=+-.++|.+-+.+..+. -.+..+++++.-+|+.+...++.+ .|.+++.++.+ |.+.|++.
T Consensus 135 m~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~- 206 (450)
T COG0403 135 LDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLESA- 206 (450)
T ss_pred CCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-------hhhhhhhc-
Confidence 44455556667776666665444 223589999999999998887653 56777777654 56777766
Q ss_pred HHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEE-eccCCcCCCCCCCcccHHHHHhhhcCCCCCcE
Q 046900 192 KEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVS-DEIYSGSAFSSSEFVSIAEILEARQYKDSERV 270 (442)
Q Consensus 192 ~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~-De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~v 270 (442)
.+ ..+-++++.+|+. .|.. .+++.+|.+.+++++.++++ =|.-+... ..+..++ +--
T Consensus 207 ~~-----~~~~gv~vQyP~~-~G~~--~~d~~~l~~~~h~~~al~~v~aDplaL~L-----L~pPGe~---------GAD 264 (450)
T COG0403 207 DD-----GDVFGVLVQYPNT-FGIV--EEDLRALIEAAHSAGALVIVAADPLALGL-----LKPPGEF---------GAD 264 (450)
T ss_pred cc-----cCeEEEEEecCCC-CCcc--chhHHHHHHHHhhcCCEEEEEechhHhhc-----cCCcccc---------CCc
Confidence 32 2677889998873 5632 34689999999999876654 22211111 1122222 333
Q ss_pred EEEecCcc---cCCCCCceeEEEeecCHHHHHH---------------------------HHHcccc-CCCcHHHHHHHH
Q 046900 271 HIVYSLSK---DLGLPGFRVGTIYSYNDKVVTT---------------------------ARRMSSF-TLISSQTQYLLA 319 (442)
Q Consensus 271 i~~~S~SK---~~g~~G~RiG~i~~~~~~~~~~---------------------------~~~~~~~-~~~s~~~q~~~~ 319 (442)
|++++... -+|..|-.+||..+.++..++. +++-... ..|+.....+.+
T Consensus 265 IvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~ 344 (450)
T COG0403 265 IVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALA 344 (450)
T ss_pred eEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHH
Confidence 77776544 3556677888888743332211 1111111 222322222222
Q ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeecCCceEE--EEEecCCcccccChhhHHHHHHHHHHcCcE
Q 046900 320 SMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA--GIECLKGNAGLF--CWMNLSPLLEEQTREGELALWDSMLHEVKL 395 (442)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi 395 (442)
+.+--.-+-.+-++++.++..+...++.+.|++. |+++... .|| +.++++. +....+.++.... |+
T Consensus 345 As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~--~fFdt~~v~~~~-------~~~~~l~~~~~~~-G~ 414 (450)
T COG0403 345 ASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD--HFFDTFTVRVPE-------EVAEALLAAAIAG-GI 414 (450)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc--cceeeEEEecch-------hHHHHHHHHHHhc-CC
Confidence 1111101113457888888899999999999965 5666543 444 3334442 1244555555444 77
Q ss_pred EEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHH
Q 046900 396 NISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNF 433 (442)
Q Consensus 396 ~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~ 433 (442)
-++.- ....+-+++. ..++++++.+++.+...
T Consensus 415 ~L~~~------~~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 415 NLRRV------DADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred ceeee------cCCceEEEeecccCHHHHHHHHHHHhhh
Confidence 66541 2335666665 22678888888877654
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.8e-07 Score=85.14 Aligned_cols=213 Identities=21% Similarity=0.219 Sum_probs=48.1
Q ss_pred CCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCC---Cc---ChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHH
Q 046900 119 DLNRIVVTAGATAANELLTFILADPGDALLVPTPY---YP---GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192 (442)
Q Consensus 119 ~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~---y~---~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~ 192 (442)
..+..+++|+...|+.+++.+|. +|..|++..-. +. .+.+.++. .|++++.|-... .-.+++++++|.
T Consensus 61 gAeaA~VvNnnaAAv~L~l~~la-~~~EvIvsRGelVeiGgsFRip~vm~~-sGa~lvEVGttN----~t~~~Dye~AI~ 134 (367)
T PF03841_consen 61 GAEAALVVNNNAAAVLLALNTLA-KGKEVIVSRGELVEIGGSFRIPDVMRQ-SGARLVEVGTTN----RTHLSDYEKAIT 134 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccccccccccccc-cccccccccccc----cccccccccccc
Confidence 36788999999999999998886 45566664321 22 24456664 899999887542 235788999998
Q ss_pred HHHhcCCceeEEEEeCCCCCC--CcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC----CCCCCcccHHHHHhhhcCCC
Q 046900 193 EAESKDMRVRGVLITNPSNPL--GATIQRSVLEELLDFATRKNIHLVSDEIYSGSA----FSSSEFVSIAEILEARQYKD 266 (442)
Q Consensus 193 ~~~~~~~~~~~v~l~~P~NPt--G~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~----~~~~~~~s~~~~~~~~~~~~ 266 (442)
+ +|.+++..+++|-. |..-. -.++++++++++|++++++|-.-+.+. |+-+.-+++.....
T Consensus 135 e------~Ta~ll~Vh~Sn~~i~GFt~~-~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~------ 201 (367)
T PF03841_consen 135 E------NTAALLKVHTSNFRIQGFTGE-VSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLA------ 201 (367)
T ss_dssp ---------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCC------
T ss_pred c------ccccccccccccccccccccc-ccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhh------
Confidence 7 88899899988863 32222 138899999999999999998764221 11111123333322
Q ss_pred CCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc--cccCCCcHHHHHHHHHHhcC----chh-----HHHHHHHH
Q 046900 267 SERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM--SSFTLISSQTQYLLASMLSN----KKF-----TENYIKTN 335 (442)
Q Consensus 267 ~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~----~~~-----~~~~~~~~ 335 (442)
.+--+++.|-.|.+| |-+.|.|++ ...+++.+++. ....-+......++.+.|.. ... ..+.+...
T Consensus 202 ~GaDlV~fSGdKlLG--GPQaGiI~G-kk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~ 278 (367)
T PF03841_consen 202 AGADLVTFSGDKLLG--GPQAGIIVG-KKELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQS 278 (367)
T ss_dssp CT-SEEEEETTSSSS--S-S-EEEEE-EHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH--------------------
T ss_pred cCCCEEEEECCCcCC--CCCeEEEEe-CHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 345578889999986 556899999 56666666642 22344555555555444431 110 01223444
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 046900 336 RERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 336 ~~~~~~~~~~l~~~L~~~ 353 (442)
.+.++++.+.+...|...
T Consensus 279 ~~~L~~rA~~l~~~l~~~ 296 (367)
T PF03841_consen 279 LEELRARAERLAAQLKAA 296 (367)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 566666666676666543
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00031 Score=69.89 Aligned_cols=312 Identities=14% Similarity=0.183 Sum_probs=178.7
Q ss_pred cccccCC---CcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe--cC---hHHHHHHHHHhhcCCC----CeEEEcCCCC
Q 046900 87 ENALFQD---YHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT--AG---ATAANELLTFILADPG----DALLVPTPYY 154 (442)
Q Consensus 87 ~~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t--~G---~~~ai~~~~~~l~~~g----d~Vl~~~p~y 154 (442)
.++-|.| .+|+.++-..+..++....| -|++.+- +| -..++..+-..+...| ...++|.-.+
T Consensus 567 nIHPF~P~eQaqGY~~lf~~Le~~Lc~iTG------~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAH 640 (1001)
T KOG2040|consen 567 NIHPFAPVEQAQGYQQLFTELEKDLCEITG------FDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAH 640 (1001)
T ss_pred cCCCCCchHHHhhHHHHHHHHHHHhheeec------ccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeeccc
Confidence 3444444 36888888888888886544 3444443 33 2345555544444444 3567788888
Q ss_pred cChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCc
Q 046900 155 PGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNI 234 (442)
Q Consensus 155 ~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~ 234 (442)
..-...+.. +|++|++|.++..++ +|..+|.+..+++. .+..++.++.|+. .|+. .+.+++++++..+||-
T Consensus 641 GTNPASA~M-agmkvvpV~~~~~G~--id~~dLk~kaekh~---~~Laa~MvTYPST-~Gvf--E~~i~d~cd~iHehGG 711 (1001)
T KOG2040|consen 641 GTNPASAAM-AGMKVVPVGCDANGN--IDMVDLKAKAEKHK---DNLAALMVTYPST-HGVF--EEGIDDICDIIHEHGG 711 (1001)
T ss_pred CCChhhHHh-cCCEEEEeeccCCCC--ccHHHHHHHHHHhh---hhhheeEEecccc-cccc--cccHHHHHHHHHhcCC
Confidence 877777775 999999999987664 89999998877653 3566788888864 2332 3458999999999999
Q ss_pred EEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC----CceeEEEeecCHHHHHHHHH-------
Q 046900 235 HLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP----GFRVGTIYSYNDKVVTTARR------- 303 (442)
Q Consensus 235 ~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~----G~RiG~i~~~~~~~~~~~~~------- 303 (442)
-|..|.+...-..+ ..+.-.+..+ +.=-.++|+|+.| |-.+|=|.. .+.+...+-.
T Consensus 712 QVYlDGANMNAqVG---lc~pGd~GaD---------V~HLNLHKTFcIPHGGGGPg~gPIgV-K~HLapfLP~HpVvs~~ 778 (1001)
T KOG2040|consen 712 QVYLDGANMNAQVG---LCRPGDIGAD---------VCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSPG 778 (1001)
T ss_pred EEEecCCCccceec---ccCCcccccc---------ceeecccceeeecCCCCCCCCCccch-hhhccccCCCCCccCCC
Confidence 99999997642221 1111111111 2223677877544 222333332 2222222111
Q ss_pred ----cc-------ccCCCcH--HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCc--eEEEE
Q 046900 304 ----MS-------SFTLISS--QTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNA--GLFCW 367 (442)
Q Consensus 304 ----~~-------~~~~~s~--~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~--g~~~~ 367 (442)
.. .+|+.+. +..++-..+....+. +...+.---+..+|...|+.+ .+-+....+ +-=+.
T Consensus 779 ~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL-----~~as~~AiLNaNYMakRLe~hYkil~~~~~~~vaHEFI 853 (1001)
T KOG2040|consen 779 RPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGL-----KDASKIAILNANYMAKRLESHYKILFRGENGLVAHEFI 853 (1001)
T ss_pred CCCCCCCccceeccCCCcceeehhHHHHHHHhccccc-----chhhHHHhhhhHHHHHHHhhccceeEecCCcceeeeee
Confidence 00 1111111 234455555555442 222222333567888888875 333333222 11133
Q ss_pred EecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 368 MNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
+++.++....+. ++.+++++|. .||+.-..-++ +-.+.+-|-.. ..+.+++++++++|..+-++
T Consensus 854 lD~r~fK~~agi-eavDvAKRL~-DYgFHaPTmsw---PV~gtLMIEPTESE~k~ElDRfcdAliSIreE 918 (1001)
T KOG2040|consen 854 LDLRPFKKTAGI-EAVDVAKRLM-DYGFHAPTMSW---PVAGTLMIEPTESEDKAELDRFCDALISIREE 918 (1001)
T ss_pred eechhhccccCC-cHHHHHHHHH-hccCCCCcccc---ccCCceEeccCccccHHHHHHHHHHHHHHHHH
Confidence 566655443333 4778888884 55987544333 23466666554 22678899999988766444
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.2e-05 Score=69.14 Aligned_cols=217 Identities=13% Similarity=0.157 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEeCCCCCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhh
Q 046900 184 PQALEAAYKEAESKDMRVRGVLITNPSNPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEAR 262 (442)
Q Consensus 184 ~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~ 262 (442)
++++|+.|.++.+++..+.++++..-+...|. -.|++-.++|.++|++|++.+|+||+.-...-+|. ++..-...-
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk-~WaHehw~l-- 331 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGK-FWAHEHWNL-- 331 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCc-eeeehhcCC--
Confidence 68889999988766555555555433666664 56888899999999999999999999875333332 211111111
Q ss_pred cCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHH-HHHHccccCCCcHHHHHH---HHHHhcCchhHHHHHHHHHHH
Q 046900 263 QYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVT-TARRMSSFTLISSQTQYL---LASMLSNKKFTENYIKTNRER 338 (442)
Q Consensus 263 ~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~-~~~~~~~~~~~s~~~q~~---~~~~l~~~~~~~~~~~~~~~~ 338 (442)
+.+.. +-+|||-| ..| ||..- .+..-. ..+.+.+ |...+.-... +...+++.+ +.+.
T Consensus 332 --~~PpD---~vTFSKK~-q~g---Gffh~-~~frpn~pYrifNT-WmGdP~k~lll~~vv~~I~~~~--------Ll~n 392 (484)
T KOG1405|consen 332 --DSPPD---VVTFSKKF-QTG---GFFHD-EEFRPNEPYRIFNT-WMGDPSKNLLLEEVVQEIKRED--------LLNN 392 (484)
T ss_pred --CCCcc---ceehhhhh-hcC---ccccC-cccCCCchHHHhhh-hcCChHHHHHHHHHHHHHhHHH--------HHHH
Confidence 11222 34899999 466 67654 221111 2222222 3333322222 223333332 2223
Q ss_pred HHHHHHHHHHHHHhC-----C-CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEE
Q 046900 339 LQKRYQMIIEGLRSA-----G-IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFR 412 (442)
Q Consensus 339 ~~~~~~~l~~~L~~~-----g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iR 412 (442)
.+..-+.|...|.++ | +.-... .|.|+.+++|.... ...++..+ +.+||.+--| +...||
T Consensus 393 ~~~vG~~l~~gL~~Lq~~~p~~~~~~RG-rGTF~a~d~ps~~~------Rdk~i~~~-~~nGv~~GGC------g~~siR 458 (484)
T KOG1405|consen 393 VAHVGKALLKGLLELQAKYPGKINNLRG-RGTFIAWDCPSGSI------RDKLILIA-RLNGVNLGGC------GDKSIR 458 (484)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhhcccc-cceEEEEeCCChHH------HHHHHHHH-HHcCceeccc------ccceee
Confidence 333344444444332 1 222233 45577779887422 34555555 4448876432 234566
Q ss_pred EEeecC-CHHHHHHHHHHHHHHHHH
Q 046900 413 VCFANM-SEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 413 ls~~~~-~~e~i~~~l~~l~~~l~~ 436 (442)
+..+-. .+...+-+++++.+++..
T Consensus 459 fRPsLvf~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 459 FRPSLVFRKHHADIFLDIFDKILAG 483 (484)
T ss_pred eccceeehhhhHHHHHHHHHHHhcc
Confidence 654411 567788888888887753
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0018 Score=68.93 Aligned_cols=262 Identities=18% Similarity=0.167 Sum_probs=143.6
Q ss_pred cCCCcEEEecChHHHHH---HHHHhhcCCCCeEEEcCCCCcChHHhHhhh---cCcEEEEEecCCCCCCcCCHHHHHHHH
Q 046900 118 FDLNRIVVTAGATAANE---LLTFILADPGDALLVPTPYYPGFDRDLRWR---TGIKIVPIHCDSSNNFQITPQALEAAY 191 (442)
Q Consensus 118 ~~~~~i~~t~G~~~ai~---~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~---~G~~v~~v~~~~~~~~~~d~~~l~~~l 191 (442)
++..|-=+-.|++.+-+ ++.+.--.+..+|+++.-.+|.+...++.+ .|++++. +++++.+
T Consensus 139 m~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~~ 205 (954)
T PRK12566 139 LDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-------------DAVDNLA 205 (954)
T ss_pred chhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-------------cchhhcC
Confidence 34334334446555444 333222122468999999999988776543 5666553 2233322
Q ss_pred HHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEE
Q 046900 192 KEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVH 271 (442)
Q Consensus 192 ~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi 271 (442)
. .++.++++.+|+. .|.+ +++++|.+++++++.++| +.+.- +..+ -..+..++ +--|
T Consensus 206 ~------~~~~~v~vq~P~~-~G~i---~d~~~i~~~~h~~gal~~-~~~d~-laL~--ll~~Pge~---------GADI 262 (954)
T PRK12566 206 A------HAVFGALLQYPDT-HGEI---RDLRPLIDQLHGQQALAC-VAADL-LSLL--VLTPPGEL---------GADV 262 (954)
T ss_pred C------CCEEEEEEECCCC-ceEE---ccHHHHHHHHHHcCCEEE-EEeCH-HHHh--CCCChhhc---------CCcE
Confidence 2 2577888999975 6877 348899999999887755 33311 1111 12222333 2235
Q ss_pred EEe---cCcccCCCCCceeEEEeecCHHHHHHH----------------------------HHcccc-CCCcHHHHHHHH
Q 046900 272 IVY---SLSKDLGLPGFRVGTIYSYNDKVVTTA----------------------------RRMSSF-TLISSQTQYLLA 319 (442)
Q Consensus 272 ~~~---S~SK~~g~~G~RiG~i~~~~~~~~~~~----------------------------~~~~~~-~~~s~~~q~~~~ 319 (442)
+++ +|.=-+|..|--.||+.+.+ .+...+ ++-... +.++..+..+..
T Consensus 263 ~vG~~Q~fGvp~~~GGP~ag~~a~~~-~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~ 341 (954)
T PRK12566 263 VLGSTQRFGVPMGYGGPHAAYFACRD-DYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANI 341 (954)
T ss_pred EeeCCCcCCCCCCCCCCCeeeeeehH-HHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHH
Confidence 565 34444555566678888843 332211 111111 112222222222
Q ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeC
Q 046900 320 SMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISP 399 (442)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~p 399 (442)
+.+----+-.+-+++..++...+..++.+.|.+.|++.... .||=-+.+.-.. .+.++.+..++. ||-++-
T Consensus 342 a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~~~~--~fF~~~~v~~~~------~~~~~~~~a~~~-~~n~r~ 412 (954)
T PRK12566 342 AGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAKGIKRLNR--HFFDTLTLEVGG------AQAAIIESAEAA-RINLRI 412 (954)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCccccC--CccceEEEEccC------CHHHHHHHHHHC-CCeeEE
Confidence 21110001134477778888888889999999888876433 445332222110 145666666665 887764
Q ss_pred CCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHH
Q 046900 400 GSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIH 431 (442)
Q Consensus 400 g~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~ 431 (442)
- +++.+.||+. +.+.++++.++..+.
T Consensus 413 ~------~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 413 L------GRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred e------CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 2 2456888886 337888888888774
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0082 Score=56.48 Aligned_cols=332 Identities=13% Similarity=0.136 Sum_probs=165.8
Q ss_pred ceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEec-
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA- 127 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~- 127 (442)
.+.||+.+-..+|++.+.++-+....... .|.+-. +..+ ...-...+.+...+.+.+.++ ++-+. .|++..
T Consensus 5 ~~~nFsaGPa~lp~~vL~~a~~e~~~~~g--~g~svm-e~SH--Rsk~~~~v~~~a~~~lreLl~--iPd~Y-~VlflqG 76 (365)
T COG1932 5 RVYNFSAGPAALPPEVLQQAQKELLDWNG--LGMSVM-EISH--RSKEFKNVLEEAEKDLRELLN--IPDDY-KVLFLQG 76 (365)
T ss_pred CCCCCCCCcccCCHHHHHHHHHHHhhhcc--CCccee-eecc--ccHHHHHHHHHHHHHHHHHhC--CCCCc-eEEEEcC
Confidence 34588988777887766665544332111 011000 0111 111123444444445555544 32222 465555
Q ss_pred ChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH-hHhhhcCc--EEEEEecCCCCCCc--CCHHHHHHHHHHHHhcCCcee
Q 046900 128 GATAANELLTFILADPGDALLVPTPYYPGFDR-DLRWRTGI--KIVPIHCDSSNNFQ--ITPQALEAAYKEAESKDMRVR 202 (442)
Q Consensus 128 G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~-~~~~~~G~--~v~~v~~~~~~~~~--~d~~~l~~~l~~~~~~~~~~~ 202 (442)
|++....++...|+.++..-.+..-.|..+.. -++ ..+. ++.... ..+.+|. ++++... +. .+..
T Consensus 77 Gat~qf~~~p~nLl~~~~~~yv~~g~Ws~~a~~eA~-~~~~~~~~~~~~-~~~~~~~~iP~~~~~~--~~------~~~a 146 (365)
T COG1932 77 GATGQFAMAPMNLLGKRGTDYVDTGAWSEFAIKEAK-KVGKQPKLIDAR-IEEAGYGSIPDLSKWD--FS------DNDA 146 (365)
T ss_pred ccHHHHHHHHHhhhcccCceeEeeeehhHhHHHHHH-Hhcccccccccc-eeccCccCCCChhhcc--cC------CCcc
Confidence 58888888888887655321233333443322 223 2343 222222 1222222 3333322 11 1222
Q ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCC
Q 046900 203 GVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGL 282 (442)
Q Consensus 203 ~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~ 282 (442)
-|.+|.-..-+|+-++. ...+ .. +.++|.|-.-.-+. ....+..++ ++..|.-|.+|.
T Consensus 147 yv~~~~NeTi~Gv~v~~--~p~~---~~--~~~~v~D~SS~ils----r~iDvsk~d-----------viyagaQKnlGp 204 (365)
T COG1932 147 YVHFCWNETISGVEVPE--LPDI---GS--DGLLVADASSAILS----RPIDVSKYD-----------VIYAGAQKNLGP 204 (365)
T ss_pred EEEEecCCcccceEccC--CCCC---CC--CceEEEecccHHhc----CCCChhHcc-----------eEEEehhhccCc
Confidence 35666444456776651 1111 11 26788887755322 223443332 445789999998
Q ss_pred CCceeEEEeecCHHHHHHHHHc---------------cccCCCcHHHHHHHHHHhcCchhHHHH--HHHHHHHHHHHHHH
Q 046900 283 PGFRVGTIYSYNDKVVTTARRM---------------SSFTLISSQTQYLLASMLSNKKFTENY--IKTNRERLQKRYQM 345 (442)
Q Consensus 283 ~G~RiG~i~~~~~~~~~~~~~~---------------~~~~~~s~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~ 345 (442)
.| ++.++.++ .+.+..+.. ..+.+.++.+-+.+...+ +|+... ++.+.++-.++.+.
T Consensus 205 aG--ltvvIvr~-~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~---~Wlk~~GGl~~~~~rn~~ka~~ 278 (365)
T COG1932 205 AG--LTVVIVRP-DLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVF---KWLKSQGGLEALEARNQAKAQL 278 (365)
T ss_pred cc--eEEEEEcH-HHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHH
Confidence 88 78888854 444333322 111222233333222222 232211 45556666777888
Q ss_pred HHHHHHhCCCee---e-cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCH
Q 046900 346 IIEGLRSAGIEC---L-KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSE 420 (442)
Q Consensus 346 l~~~L~~~g~~~---~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~ 420 (442)
|.+.+.+.++-- . ...+-+.+.+++... +-+..+..++.++ |+...-|.. ..+.+|+++. +++.
T Consensus 279 LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~------~ld~~fv~eae~~-gl~~lkGhr----~vgGmRasiynA~~~ 347 (365)
T COG1932 279 LYDWIDKSDFYRNLVAKANRSRMNVTFTLVDA------ELDKGFVAEAEAA-GLIYLKGHR----SVGGLRASIYNAVPL 347 (365)
T ss_pred HHHHHHhCCccccccchhhccceeEEEEcCcH------HHHHHHHHHHHHc-CCceecccc----CCCceeeeeecCCCH
Confidence 899988764321 1 234556666666532 1245566666555 888777732 2344999987 4577
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046900 421 QTLEVALKRIHNFMQKR 437 (442)
Q Consensus 421 e~i~~~l~~l~~~l~~~ 437 (442)
|+++.+++-+..+.+++
T Consensus 348 e~veaL~~fm~~f~~~~ 364 (365)
T COG1932 348 EDVEALTDFMDWFEETY 364 (365)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 87777777666665543
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0055 Score=54.73 Aligned_cols=292 Identities=17% Similarity=0.204 Sum_probs=135.2
Q ss_pred hHHHHHHHHHhhcC--CCC-eEEEcCC-CCcChHHhHhhhcCcEEEEEe-cCCCCCCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 129 ATAANELLTFILAD--PGD-ALLVPTP-YYPGFDRDLRWRTGIKIVPIH-CDSSNNFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 129 ~~~ai~~~~~~l~~--~gd-~Vl~~~p-~y~~~~~~~~~~~G~~v~~v~-~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
....+.+.+..+.. |.. .|+-+.- .-..+...+. .|++.+-+. +.+.+...-|++.+++.+++. |+.. .
T Consensus 85 tgmslslc~~s~r~krpkakyiiw~ridqks~~ksi~~--agfepiiie~i~d~d~l~tdleav~~~iee~---g~dc-i 158 (432)
T KOG3843|consen 85 TGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIH--AGFEPIIIENILDGDELITDLEAVEAIIEEL---GEDC-I 158 (432)
T ss_pred ccccHHHHHHHHhhcCCcccEEEEEecchHHHHHHHHh--cCCCceeeeccccchHHHHhHHHHHHHHHHh---CCce-E
Confidence 33445566666633 433 3332222 2233333332 788877764 333334555788888888764 3332 2
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC-cccHHHHHhhhcCCCCCcEEEEecCcccCCC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE-FVSIAEILEARQYKDSERVHIVYSLSKDLGL 282 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~-~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~ 282 (442)
+++-+. ...=..-+++.+++|..+|..|+++-|+..+|+. .... ..-+... .+. ...-.++.|+-|.|-+
T Consensus 159 lci~st-tscfapr~pd~leaiaaica~~diphivnnaygl---qsee~i~~iaa~-~~~----grida~vqsldknf~v 229 (432)
T KOG3843|consen 159 LCIHST-TSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGL---QSEECIHKIAAA-AEC----GRIDAFVQSLDKNFMV 229 (432)
T ss_pred EEEeec-ccccCCCCCchHHHHHHHHHccCchhhhcccccc---chHHHHHHHHHH-hhh----ccHHHHHHHhhhccee
Confidence 222111 1111123567899999999999999999999983 2211 1111111 110 0112346799999864
Q ss_pred CCceeEEEe-ecCHHHHHHHHHccccCCCcHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCee-e
Q 046900 283 PGFRVGTIY-SYNDKVVTTARRMSSFTLISSQTQYLLASMLS--NKKFTENYIKTNRERLQKRYQMIIEGLRSAGIEC-L 358 (442)
Q Consensus 283 ~G~RiG~i~-~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~ 358 (442)
| . .|.++ +-++..++.+.++..--..++++.-.+..+|. .-.+ .+-+.+..+.+...|..+...-+.+|-.+ .
T Consensus 230 p-v-ggaiia~fk~n~iq~iak~ypgrasa~ps~dllitll~~gqn~f-~e~~~eqkemf~~l~~ki~~~ae~~~e~l~~ 306 (432)
T KOG3843|consen 230 P-V-GGAIIAAFKDNFIQEIAKMYPGRASASPSLDLLITLLSLGQNAF-KELFGEQKEMFLKLRNKIIKFAEAIGECLLE 306 (432)
T ss_pred e-c-chhHhhHhHHHHHHHHHHhCCCccccCccHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 4 1 13333 22333343333332222223333333333333 2223 23334444444444444444444433222 2
Q ss_pred cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcE---EEeCCCCC------------CC----CCCCEEEEEee-cC
Q 046900 359 KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKL---NISPGSSC------------HC----SEPGWFRVCFA-NM 418 (442)
Q Consensus 359 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi---~v~pg~~f------------~~----~~~~~iRls~~-~~ 418 (442)
.|+...-....+....... +.+..++-.++-..|| .|.|.+.. +. ..-+|+-+..+ .+
T Consensus 307 ~p~n~is~amtl~ti~~~k--~kavt~~gsilfak~isgarvv~~~q~kttieg~ef~~f~sht~e~~~~yln~a~aigm 384 (432)
T KOG3843|consen 307 TPENEISLAMTLKTIDEAK--DKAVTLFGSILFAKGISGARVVPLGQMKTTIEGCEFIGFGSHTNEQHCAYLNAACAIGM 384 (432)
T ss_pred CCCchhhhhhhhccCChHH--hhHHHHHHHHHHhccccCceEeeccccceeeeceEEeccccccCcCchhHhhHHHhcCC
Confidence 2333222222222211111 0122222222222243 34443321 11 11134444333 34
Q ss_pred CHHHHHHHHHHHHHHHHHHHhh
Q 046900 419 SEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 419 ~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
+..++++++.||.+.+.+.++.
T Consensus 385 ~~hdld~~~~rl~~~~a~~~ke 406 (432)
T KOG3843|consen 385 KDHDLDEFFNRLDRCLAAFRKE 406 (432)
T ss_pred cHhHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999988876654
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0084 Score=65.38 Aligned_cols=191 Identities=16% Similarity=0.136 Sum_probs=123.3
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh------cCCCCeEEEcCCCCcChHHhH
Q 046900 88 NALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL------ADPGDALLVPTPYYPGFDRDL 161 (442)
Q Consensus 88 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l------~~~gd~Vl~~~p~y~~~~~~~ 161 (442)
..-|.++.|...+|.-||.|++.+++ +++++++|++.++-..+|..+++.+ ++.+.+-.++ ..+...+
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 492 (1082)
T PLN02672 419 YFPCEPPAGSKRFRNLIAGFMRIYHH--IPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTRWLP----KKWLTSL 492 (1082)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcC--CcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhhccCC----HHHHhHh
Confidence 34577889999999999999999887 7899999999999999998887765 3333222222 1222222
Q ss_pred hhh-------c--CcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhc
Q 046900 162 RWR-------T--GIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK 232 (442)
Q Consensus 162 ~~~-------~--G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~ 232 (442)
... . .+.|+.-|.. .+.+.+.+++. ++++|+..--. +-..+....+.|++.+++.
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 556 (1082)
T PLN02672 493 AIENATSDSKSDDVITVIEAPRQ--------SDLVIELIKKL-----KPQVVVTGMAD---FEMRTSTAFEHLLNVTAEI 556 (1082)
T ss_pred hhhcccccCccCCeEEEEeCCCc--------chHHHHHHHhC-----CCeEEEEeccc---hhhhhHHHHHHHHHHHHhh
Confidence 210 1 1233333322 23555555543 66766654322 3344566799999999999
Q ss_pred CcEEEEeccCC-cCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH
Q 046900 233 NIHLVSDEIYS-GSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR 303 (442)
Q Consensus 233 ~~~vi~De~y~-~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~ 303 (442)
|.+++.|..-. ++. ..+....+.++... ...+.+..++.++-|.-=.+.+-+.+++..++.+.+.+.+
T Consensus 557 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1082)
T PLN02672 557 GARLFLDISDHLELS-SLPGSNGVLKYLAG--HPLPSHAAIICGLVKNQVYSDLEVAFVISENEAVLKALSK 625 (1082)
T ss_pred CcEEEEehhhheeec-cCCCcccHHHHhcC--CCCCcchhHhhhhhhccccccceEEEEecCcHHHHHHHHH
Confidence 99999999833 221 12233345555442 2234566667788887445899999999877778777654
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.046 Score=50.16 Aligned_cols=118 Identities=12% Similarity=0.103 Sum_probs=84.0
Q ss_pred cCCCcEEEecChHHHHHHHHHhhcCCC---CeEEEcCCCCcC----hHHhHhhhcCcEE----EEEecCCCCCCcCCHHH
Q 046900 118 FDLNRIVVTAGATAANELLTFILADPG---DALLVPTPYYPG----FDRDLRWRTGIKI----VPIHCDSSNNFQITPQA 186 (442)
Q Consensus 118 ~~~~~i~~t~G~~~ai~~~~~~l~~~g---d~Vl~~~p~y~~----~~~~~~~~~G~~v----~~v~~~~~~~~~~d~~~ 186 (442)
...++|.+.|+-+.-+..++.+|.+|. -+|+++.-.|+. +...++. .|..+ +.+... ++.-.+..++
T Consensus 126 A~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~l-hG~~~e~sm~~iePR-EGEetlRteD 203 (465)
T KOG3846|consen 126 AQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKL-HGISPENSMIQIEPR-EGEETLRTED 203 (465)
T ss_pred CCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhh-cCCChHHheEEeccc-ccccchhHHH
Confidence 567889999999999999999997765 378888877765 3445664 67643 233222 2334466777
Q ss_pred HHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCC
Q 046900 187 LEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYS 243 (442)
Q Consensus 187 l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~ 243 (442)
+.+.|+. .+....+|+++-.+.=||+.++ +.+|-..-...|++|=.|-+++
T Consensus 204 ILd~IEk---ngDeiA~v~fSGvqyYTGQ~Fd---i~aIT~Agq~kgc~VGfDLAHA 254 (465)
T KOG3846|consen 204 ILDTIEK---NGDEIALVCFSGVQYYTGQYFD---IGAITFAGQFKGCLVGFDLAHA 254 (465)
T ss_pred HHHHHHh---cCCeEEEEEeecceeecccccc---hhhhhhcccCCCcEechhhhhh
Confidence 7777765 3456666777777899999998 6666655556689888888887
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.5 Score=44.71 Aligned_cols=87 Identities=18% Similarity=0.237 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPG 409 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~ 409 (442)
+-++++.+++....-.|...|++.|-++.... ||=.+++.-.. ...++..+.+++ +|-++- -+++
T Consensus 391 ~gL~~IArrvh~~T~~l~~~l~~aghel~~k~--fFDTLkI~~~~------s~~~~l~rA~~~-~iNlr~------~ed~ 455 (1001)
T KOG2040|consen 391 HGLKEIARRVHNLTLILAEGLKNAGHELQHKP--FFDTLKIRCGC------SAEEVLDRAAKR-QINLRL------VEDG 455 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhcccc--ccceEEEEecC------cHHHHHHHHHhh-cCceEE------eecC
Confidence 34677777788888888899988775554322 55433332211 256777777776 665543 2456
Q ss_pred EEEEEee-cCCHHHHHHHHHHHH
Q 046900 410 WFRVCFA-NMSEQTLEVALKRIH 431 (442)
Q Consensus 410 ~iRls~~-~~~~e~i~~~l~~l~ 431 (442)
.+-+++- +.++++++.++..+.
T Consensus 456 tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 456 TIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred ceEEeecccccHHHHHHHHHHHc
Confidence 7888885 336788888877665
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.65 E-value=3.5 Score=37.84 Aligned_cols=335 Identities=13% Similarity=0.119 Sum_probs=167.4
Q ss_pred CCceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 47 PSGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
|..++||+.+.-.+|.+.+.+..++...--.. |.+-. ++.+ .......+.+.-...+.+.++ ++-+-+-+++-
T Consensus 5 ~~~vvnFaaGPAklp~~VL~e~qkdl~n~~g~--GisV~-EmSH--Rsk~f~kii~~tes~lreLln--iPdn~~vlf~Q 77 (370)
T KOG2790|consen 5 PERVVNFAAGPAKLPESVLLEAQKDLLNFNGS--GISVM-EMSH--RSKDFAKIINDTESLLRELLN--IPDNYKVLFLQ 77 (370)
T ss_pred ccceeecCCCcccCCHHHHHHHHHHhhccCCC--cceEE-Eecc--cchhHHHHHHHHHHHHHHHHc--CCCceeEEEEe
Confidence 56778999887778887777766654432111 11100 1111 111223444444444444433 32222234555
Q ss_pred cChHHHHHHHHHhhc--CCC---CeEEEcCCCCcChHHhHhhhcC-cEEEEEecCCCC-CCcCCHHHHHHHHHHHHhcCC
Q 046900 127 AGATAANELLTFILA--DPG---DALLVPTPYYPGFDRDLRWRTG-IKIVPIHCDSSN-NFQITPQALEAAYKEAESKDM 199 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~--~~g---d~Vl~~~p~y~~~~~~~~~~~G-~~v~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~ 199 (442)
.|++.-...+...|+ +.| |.|++-.-+--.+.++-+ +| ...+..++.+.. +--+|.+.++. .+
T Consensus 78 GGGt~qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk--~~~~~~V~~~~k~y~ygkvPd~~~w~~--------~~ 147 (370)
T KOG2790|consen 78 GGGTGQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKK--YGTPNIVIPKLKSYTYGKVPDPSTWEL--------NP 147 (370)
T ss_pred CCCcccccccchhhhccccCCccceEEeccccHHHHHHHHh--hCCceEEeccccccccCcCCChhhccc--------CC
Confidence 567777777766665 445 566665544444555444 34 334444443221 12244555443 22
Q ss_pred ceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCccc
Q 046900 200 RVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKD 279 (442)
Q Consensus 200 ~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~ 279 (442)
+.+.+++|.--.-.|+-++.-- +-.-++.++|.|-.-- |-.. +..+..+ -+++.+.-|.
T Consensus 148 da~yvyyCaNETVHGVEf~~~P------~~~~~~~vlVaDmSSn---flSr-pvDvsk~-----------gvi~aGAQKN 206 (370)
T KOG2790|consen 148 DASYVYYCANETVHGVEFDFIP------VNDPKGAVLVADMSSN---FLSR-PVDVSKF-----------GVIFAGAQKN 206 (370)
T ss_pred CccEEEEecCceeeceecCCCC------CCCCCCceEEEecccc---hhcC-Cccchhc-----------ceEEeccccc
Confidence 4457788755444566554211 1124577778886643 2222 2222222 2567889999
Q ss_pred CCCCCceeEEEeecCHHHHHHHHH-------------ccccCCCcHH----HHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 046900 280 LGLPGFRVGTIYSYNDKVVTTARR-------------MSSFTLISSQ----TQYLLASMLSNKKFTENYIKTNRERLQKR 342 (442)
Q Consensus 280 ~g~~G~RiG~i~~~~~~~~~~~~~-------------~~~~~~~s~~----~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 342 (442)
+|.+|+ -.++..++.+-..... ...+.+.+.. .-.++..+++.++ +..+.+.-.++
T Consensus 207 ~G~aG~--Tvvivr~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GG-----l~a~e~~n~~K 279 (370)
T KOG2790|consen 207 VGPAGV--TVVIVRKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGG-----LAAMEKLNQEK 279 (370)
T ss_pred cCcccc--EEEEEehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhccc-----HHHHHHHHHHH
Confidence 998885 3344433332221110 0111111111 2223344444444 34444555667
Q ss_pred HHHHHHHHHhC-CCeeec----CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-
Q 046900 343 YQMIIEGLRSA-GIECLK----GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA- 416 (442)
Q Consensus 343 ~~~l~~~L~~~-g~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~- 416 (442)
.+.+.+.+.+. |+-..+ ..+-|.+.+++... +-+.++.++..++ ++.-.-|.. .-|.||-|+.
T Consensus 280 skllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~~d------~Le~eFLkeA~~~-~mv~LKGhR----SVGGiRASlYN 348 (370)
T KOG2790|consen 280 SKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIEKD------ELEAEFLKEAAKE-HMVQLKGHR----SVGGIRASLYN 348 (370)
T ss_pred HHHHHHHHHhcCCeEEcccchhhhhhcccceeecch------HHHHHHHHHHHHh-hhhcccccc----ccccchhhhhc
Confidence 78888998765 543222 12233444444321 1245666666666 554444432 2356999986
Q ss_pred cCCHHHHHHHHHHHHHHHHHH
Q 046900 417 NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 417 ~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.++-++.++++.-++++.+.+
T Consensus 349 Aisv~~~q~L~~~m~~F~k~h 369 (370)
T KOG2790|consen 349 AISVEEVQKLAAFMKEFQKKH 369 (370)
T ss_pred cccHHHHHHHHHHHHHHHHhc
Confidence 457888888887777776654
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=87.66 E-value=15 Score=34.27 Aligned_cols=142 Identities=15% Similarity=0.216 Sum_probs=81.1
Q ss_pred cCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhh--cCcEEEEEecCCCCCCcCCHHHHHHHHHHHH
Q 046900 118 FDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWR--TGIKIVPIHCDSSNNFQITPQALEAAYKEAE 195 (442)
Q Consensus 118 ~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~--~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~ 195 (442)
++.+-|++|.|++..=..+..-+.+.|-++++.+-.=.+..+..+.. .| ++..+-+|-. +.|++.+..++..
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis-----~~eei~~~a~~Vk 109 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDIS-----DREEIYRLAKKVK 109 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-ceeEEEecCC-----CHHHHHHHHHHHH
Confidence 56667888888877777777888888987766655544444333321 35 4555554432 4566666555544
Q ss_pred hcCCceeEEEEeCCC---CCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEE
Q 046900 196 SKDMRVRGVLITNPS---NPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHI 272 (442)
Q Consensus 196 ~~~~~~~~v~l~~P~---NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~ 272 (442)
++-..+ -|+++|.. .-...-.+.+++++..++=-- + .+.....+.+.+-....+.++.
T Consensus 110 ~e~G~V-~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~-----------~-------~f~t~kaFLP~M~~~~~GHIV~ 170 (300)
T KOG1201|consen 110 KEVGDV-DILVNNAGIVTGKKLLDCSDEEIQKTFDVNTI-----------A-------HFWTTKAFLPKMLENNNGHIVT 170 (300)
T ss_pred HhcCCc-eEEEeccccccCCCccCCCHHHHHHHHHHhhH-----------H-------HHHHHHHHhHHHHhcCCceEEE
Confidence 443344 36777764 223344688888887764321 1 1333444444432234567777
Q ss_pred EecCcccCCCCC
Q 046900 273 VYSLSKDLGLPG 284 (442)
Q Consensus 273 ~~S~SK~~g~~G 284 (442)
+.|.--.+|.+|
T Consensus 171 IaS~aG~~g~~g 182 (300)
T KOG1201|consen 171 IASVAGLFGPAG 182 (300)
T ss_pred ehhhhcccCCcc
Confidence 777666566665
|
|
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.44 E-value=9.3 Score=33.92 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=64.3
Q ss_pred EEEecChHHHHHHHHHhhcCCCCeE---EEc---CC-CC-------cChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHH
Q 046900 123 IVVTAGATAANELLTFILADPGDAL---LVP---TP-YY-------PGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALE 188 (442)
Q Consensus 123 i~~t~G~~~ai~~~~~~l~~~gd~V---l~~---~p-~y-------~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~ 188 (442)
+.+-+|+..+..++..++- .|..| +.. ++ +| ......+. ..|..++....+.+ ..-..++|.
T Consensus 4 ~aL~SGGKDS~~Al~~a~~-~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae-~~gi~l~~~~~~g~--~e~eve~L~ 79 (223)
T COG2102 4 IALYSGGKDSFYALYLALE-EGHEVVYLLTVKPENGDSYMFHTPNLELAELQAE-AMGIPLVTFDTSGE--EEREVEELK 79 (223)
T ss_pred EEEEecCcHHHHHHHHHHH-cCCeeEEEEEEecCCCCeeeeeccchHHHHHHHH-hcCCceEEEecCcc--chhhHHHHH
Confidence 6778898888888777763 44222 111 11 12 11122334 47888888876542 223578888
Q ss_pred HHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEE
Q 046900 189 AAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHL 236 (442)
Q Consensus 189 ~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~v 236 (442)
++++.. +..+|+ +|.+++..++.++=.+|++.|+-+
T Consensus 80 ~~l~~l-----~~d~iv-------~GaI~s~yqk~rve~lc~~lGl~~ 115 (223)
T COG2102 80 EALRRL-----KVDGIV-------AGAIASEYQKERVERLCEELGLKV 115 (223)
T ss_pred HHHHhC-----cccEEE-------EchhhhHHHHHHHHHHHHHhCCEE
Confidence 888753 444555 799999999999999999998754
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=81.12 E-value=10 Score=34.09 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=54.3
Q ss_pred EEEecC-hHHHHHHHHHhhcCCCCeEE-EcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCc
Q 046900 123 IVVTAG-ATAANELLTFILADPGDALL-VPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMR 200 (442)
Q Consensus 123 i~~t~G-~~~ai~~~~~~l~~~gd~Vl-~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 200 (442)
|+|+.+ +..+-. ++.+|..++-.|. +..+.-......++ ..|++++..+.+ |.+.|.++++ .
T Consensus 1 I~V~GatG~~G~~-v~~~L~~~~~~V~~l~R~~~~~~~~~l~-~~g~~vv~~d~~-------~~~~l~~al~-------g 64 (233)
T PF05368_consen 1 ILVTGATGNQGRS-VVRALLSAGFSVRALVRDPSSDRAQQLQ-ALGAEVVEADYD-------DPESLVAALK-------G 64 (233)
T ss_dssp EEEETTTSHHHHH-HHHHHHHTTGCEEEEESSSHHHHHHHHH-HTTTEEEES-TT--------HHHHHHHHT-------T
T ss_pred CEEECCccHHHHH-HHHHHHhCCCCcEEEEeccchhhhhhhh-cccceEeecccC-------CHHHHHHHHc-------C
Confidence 345554 444433 4455555664443 34433122233345 389998866543 6799999887 4
Q ss_pred eeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEE
Q 046900 201 VRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVS 238 (442)
Q Consensus 201 ~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~ 238 (442)
...++++.|.+. .-..+.-..+++.|++.|+-.++
T Consensus 65 ~d~v~~~~~~~~---~~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 65 VDAVFSVTPPSH---PSELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp CSEEEEESSCSC---CCHHHHHHHHHHHHHHHT-SEEE
T ss_pred CceEEeecCcch---hhhhhhhhhHHHhhhccccceEE
Confidence 556776655433 22345677889999888765443
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 442 | ||||
| 1b8g_A | 429 | 1-aminocyclopropane-1-carboxylate Synthase Length = | 1e-151 | ||
| 1m7y_A | 435 | Crystal Structure Of Apple Acc Synthase In Complex | 1e-151 | ||
| 1ynu_A | 473 | Crystal Structure Of Apple Acc Synthase In Complex | 1e-151 | ||
| 1iax_A | 428 | Crystal Structure Of Acc Synthase Complexed With Pl | 1e-149 | ||
| 3piu_A | 410 | High-Resolution Structure Of Native Malus Domestica | 1e-145 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 2e-21 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 2e-21 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 3e-21 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 4e-21 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 4e-21 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 1e-20 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 2e-20 | ||
| 2gb3_A | 409 | Crystal Structure Of Aspartate Aminotransferase (Tm | 2e-17 | ||
| 2z61_A | 370 | Crystal Structure Of Mj0684 From Methanococcus Jann | 2e-17 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 9e-16 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 1e-15 | ||
| 1xi9_A | 406 | Alanine Aminotransferase From Pyrococcus Furiosus P | 5e-15 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 8e-15 | ||
| 3ele_A | 398 | Crystal Structure Of Amino Transferase (rer07020700 | 2e-13 | ||
| 2zc0_A | 407 | Crystal Structure Of An Archaeal Alanine:glyoxylate | 3e-12 | ||
| 3tcm_A | 500 | Crystal Structure Of Alanine Aminotransferase From | 1e-11 | ||
| 3h14_A | 391 | Crystal Structure Of A Putative Aminotransferase Fr | 4e-11 | ||
| 3pdx_A | 402 | Crystal Structural Of Mouse Tyrosine Aminotransfera | 5e-10 | ||
| 1u08_A | 386 | Crystal Structure And Reactivity Of Ybdl From Esche | 6e-10 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 7e-10 | ||
| 2o1b_A | 404 | Structure Of Aminotransferase From Staphylococcus A | 9e-10 | ||
| 3dyd_A | 427 | Human Tyrosine Aminotransferase Length = 427 | 1e-09 | ||
| 3op7_A | 375 | Crystal Structure Of A Plp-Dependent Aminotransfera | 2e-09 | ||
| 3ihj_A | 498 | Human Alanine Aminotransferase 2 In Complex With Pl | 1e-08 | ||
| 3b1c_A | 392 | Crystal Structure Of Betac-S Lyase From Streptococc | 2e-08 | ||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 8e-08 | ||
| 3aov_A | 448 | Crystal Structure Of Pyrococcus Horikoshii Kynureni | 2e-07 | ||
| 1bw0_A | 416 | Crystal Structure Of Tyrosine Aminotransferase From | 2e-07 | ||
| 3e2z_B | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 2e-07 | ||
| 3e2f_A | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 2e-07 | ||
| 1x0m_A | 403 | A Human Kynurenine Aminotransferase Ii Homologue Fr | 2e-07 | ||
| 1w7n_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 5e-07 | ||
| 1yiz_A | 429 | Aedes Aegypti Kynurenine Aminotrasferase Length = 4 | 7e-07 | ||
| 1yiy_A | 429 | Aedes Aegypti Kynurenine Aminotransferase Length = | 7e-07 | ||
| 2dou_A | 376 | Probable N-Succinyldiaminopimelate Aminotransferase | 1e-06 | ||
| 4dgt_A | 391 | Crystal Structure Of Plp-Bound Putative Aminotransf | 2e-06 | ||
| 1w7l_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 2e-06 | ||
| 3fvs_A | 422 | Human Kynurenine Aminotransferase I In Complex With | 2e-06 | ||
| 3asa_A | 400 | Crystal Structure Of Apo-Ll-Diaminopimelate Aminotr | 1e-05 | ||
| 1vp4_A | 425 | Crystal Structure Of A Putative Aminotransferase (T | 1e-05 | ||
| 1wst_A | 417 | Crystal Structure Of Multiple Substrate Aminotransf | 1e-05 | ||
| 1lkc_A | 364 | Crystal Structure Of L-Threonine-O-3-Phosphate Deca | 2e-05 | ||
| 1c7n_A | 399 | Crystal Structure Of Cystalysin From Treponema Dent | 5e-05 | ||
| 2o0r_A | 411 | The Three-Dimensional Structure Of N-Succinyldiamin | 1e-04 | ||
| 2zy2_A | 544 | Dodecameric L-Aspartate Beta-Decarboxylase Length = | 1e-04 | ||
| 3l8a_A | 421 | Crystal Structure Of Metc From Streptococcus Mutans | 3e-04 | ||
| 3p1t_A | 337 | Crystal Structure Of A Putative Aminotransferase (B | 3e-04 | ||
| 3fdb_A | 377 | Crystal Structure Of A Putative Plp-Dependent Beta- | 4e-04 | ||
| 3fkd_A | 350 | The Crystal Structure Of L-Threonine-O-3-Phosphate | 5e-04 | ||
| 3b46_A | 447 | Crystal Structure Of Bna3p, A Putative Kynurenine A | 6e-04 |
| >pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435 | Back alignment and structure |
|
| >pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473 | Back alignment and structure |
|
| >pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398 | Back alignment and structure |
|
| >pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate Aminotransferase Length = 407 | Back alignment and structure |
|
| >pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500 | Back alignment and structure |
|
| >pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391 | Back alignment and structure |
|
| >pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402 | Back alignment and structure |
|
| >pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404 | Back alignment and structure |
|
| >pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427 | Back alignment and structure |
|
| >pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375 | Back alignment and structure |
|
| >pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498 | Back alignment and structure |
|
| >pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392 | Back alignment and structure |
|
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448 | Back alignment and structure |
|
| >pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416 | Back alignment and structure |
|
| >pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410 | Back alignment and structure |
|
| >pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410 | Back alignment and structure |
|
| >pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403 | Back alignment and structure |
|
| >pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422 | Back alignment and structure |
|
| >pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429 | Back alignment and structure |
|
| >pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429 | Back alignment and structure |
|
| >pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase (Ttha0342) From Thermus Thermophilus Hb8 Length = 376 | Back alignment and structure |
|
| >pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391 | Back alignment and structure |
|
| >pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422 | Back alignment and structure |
|
| >pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422 | Back alignment and structure |
|
| >pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate Aminotransferase From Chlamydia Trachomatis Length = 400 | Back alignment and structure |
|
| >pdb|1VP4|A Chain A, Crystal Structure Of A Putative Aminotransferase (Tm1131) From Thermotoga Maritima Msb8 At 1.82 A Resolution Length = 425 | Back alignment and structure |
|
| >pdb|1WST|A Chain A, Crystal Structure Of Multiple Substrate Aminotransferase (Msat) From Thermococcus Profundus Length = 417 | Back alignment and structure |
|
| >pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364 | Back alignment and structure |
|
| >pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola Contains A Pyridoxal 5'-Phosphate Cofactor Length = 399 | Back alignment and structure |
|
| >pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411 | Back alignment and structure |
|
| >pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase Length = 544 | Back alignment and structure |
|
| >pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans Length = 421 | Back alignment and structure |
|
| >pdb|3P1T|A Chain A, Crystal Structure Of A Putative Aminotransferase (Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60 A Resolution Length = 337 | Back alignment and structure |
|
| >pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium Diphtheriae At 1.99 A Resolution Length = 377 | Back alignment and structure |
|
| >pdb|3FKD|A Chain A, The Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Porphyromonas Gingivalis Length = 350 | Back alignment and structure |
|
| >pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 442 | |||
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 0.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 0.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 3e-52 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 2e-50 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 4e-50 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 6e-46 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 2e-45 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 2e-44 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 6e-44 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 2e-43 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 5e-43 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 1e-41 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 6e-41 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 8e-41 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 8e-41 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 8e-41 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 5e-40 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 6e-40 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 4e-39 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 8e-39 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 1e-38 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 1e-38 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 2e-38 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 2e-38 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 4e-38 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 3e-37 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 4e-37 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 8e-36 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 2e-35 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 1e-34 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 2e-33 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 3e-33 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 2e-32 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 3e-32 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 4e-32 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 1e-31 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 3e-31 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 4e-31 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 3e-30 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 1e-29 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 2e-27 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 1e-25 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 2e-25 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 9e-25 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 1e-24 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 1e-24 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 4e-21 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 4e-19 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 6e-19 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 1e-18 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 1e-18 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 2e-18 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 5e-18 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 5e-18 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 1e-17 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 2e-17 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 2e-17 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 5e-17 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 3e-14 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 5e-13 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 6e-13 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 5e-12 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 4e-11 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 2e-10 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 3e-10 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 3e-10 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 1e-09 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 7e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 1e-06 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 5e-05 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 8e-04 |
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 650 bits (1680), Expect = 0.0
Identities = 241/426 (56%), Positives = 328/426 (76%), Gaps = 2/426 (0%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LSK+A +E HGE+SPYF GWKAYD +P+ NP+GVIQMGLAENQ+ DL+E+++++ P
Sbjct: 2 LSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRNP 61
Query: 74 EASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAAN 133
+ S +G F+ A FQDYHGL FR+A+A FME+ RGGR +FD R+V+ GAT AN
Sbjct: 62 KGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGAN 121
Query: 134 ELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKE 193
E + F LADPGDA LVP+PYYP F+RDLRWRTG++++PIHC+SSNNF+IT +A++ AY+
Sbjct: 122 ETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYEN 181
Query: 194 AESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253
A+ +++V+G+++TNPSNPLG T+ + L+ +L F + NIHLV DEIY+ + F + +FV
Sbjct: 182 AQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFV 241
Query: 254 SIAEILEARQ--YKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLIS 311
SIAEIL+ ++ Y + + VHIVYSLSKD+GLPGFRVG IYS+ND VV AR+MSSF L+S
Sbjct: 242 SIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVS 301
Query: 312 SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLS 371
+QTQY LA+MLS++KF +N+++ + RL KR++ GL GI+CLK NAGLFCWM+L
Sbjct: 302 TQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLR 361
Query: 372 PLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIH 431
PLL E T + E++LW ++++VKLN+SPGSS C EPGWFRVCFANM + T+++AL RI
Sbjct: 362 PLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIR 421
Query: 432 NFMQKR 437
F+
Sbjct: 422 RFVGVE 427
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 644 bits (1663), Expect = 0.0
Identities = 255/428 (59%), Positives = 333/428 (77%), Gaps = 5/428 (1%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LS+ A +HG+DS YF GW+ Y++NPY E N +G+IQMGLAENQ+ FDLLE +L + P
Sbjct: 4 LSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKNP 63
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
EA+ + K G F E ALFQDYHGL +F++AM FM +IRG + FD N +V+TAGAT+A
Sbjct: 64 EAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSA 123
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE F LADPG+A+L+PTPYYPGFDRDL+WRTG++IVPIHC SSN FQIT ALE AY+
Sbjct: 124 NETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQ 183
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252
EAE +++RV+GVL+TNPSNPLG T+ R+ L LL F K IHL+SDEIYSG+AFSS F
Sbjct: 184 EAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSF 243
Query: 253 VSIAEILEARQYKDS----ERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT 308
+S+ E+L+ R ++ +RVH+VYSLSKDLGLPGFRVG IYS +D VV A +MSSF
Sbjct: 244 ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG 303
Query: 309 LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWM 368
L+SSQTQ+LL++MLS+KK T+NYI N +RL++R + ++ GL+ +GI CL GNAGLFCW+
Sbjct: 304 LVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWV 363
Query: 369 NLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALK 428
++ LL T E E+ LW +++EV LNISPGSSCHC+EPGWFRVCFAN+ E+TL++A++
Sbjct: 364 DMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQ 423
Query: 429 RIHNFMQK 436
R+ F+ +
Sbjct: 424 RLKAFVGE 431
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 3e-52
Identities = 69/350 (19%), Positives = 147/350 (42%), Gaps = 32/350 (9%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
G S R+ +AS+ + +++T+G + A +L +LA+PG +LVP P +
Sbjct: 97 GFLSSREEIASYYHC-PEA--PLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFS 153
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA 215
+ + L GI++ + +++I + LE E + +++ NPSNP G+
Sbjct: 154 LY-KTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDE------KTACLIVNNPSNPCGS 206
Query: 216 TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275
+ L+++L A R+ + +++DEIY FS ++ +A + +
Sbjct: 207 VFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATL------STDVPILSCGG 260
Query: 276 LSKDLGLPGFRVGTIYSYN------DKVVTTARRMSSFTL-ISSQTQYLLASMLSNKKFT 328
L+K +PG+R+G I ++ +++ ++S L + Q L S+L
Sbjct: 261 LAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTP-- 318
Query: 329 ENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSP-LLEEQTREGELALW 386
+ L+ + L + G+ ++ + ++ + + E + E
Sbjct: 319 GEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTER 378
Query: 387 DSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436
++ E ++ P + P + RV + E + A RI F ++
Sbjct: 379 --LVAEQSVHCLPATCFEY--PNFIRVVIT-VPEVMMLEACSRIQEFCEQ 423
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 2e-50
Identities = 66/363 (18%), Positives = 142/363 (39%), Gaps = 46/363 (12%)
Query: 96 GLKSFRQAMASFMEQIRGGR----AKFDLNRIVVTAGATAANELLTFILADPGDALLVPT 151
G R+A+A++ + + + +V+ +G + + + D GD LVP
Sbjct: 76 GSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQ 135
Query: 152 PYYPGFDRDLRWRT-----GIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206
P +P + T GI + +C N+++ + D + + +++
Sbjct: 136 PGFP------HYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLK------DDKTKLLIV 183
Query: 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYS----GSAFSSSEFVSIAEILEAR 262
TNPSNP G+ R +E+++ A + L SDEIY+ ++ F S+A+
Sbjct: 184 TNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADF---- 239
Query: 263 QYKDSERVHIVYSLSKDLGLPGFRVGTI-----YSYNDKVVTTARRMSSFTL-ISSQTQY 316
+ + I+ +K+L +PG+R+G + + + +R+ + Q
Sbjct: 240 --ETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQA 297
Query: 317 LLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSP-LL 374
L L N + ++ ++++ + + G+ ++ +
Sbjct: 298 ALGEALLNT--PQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKY 355
Query: 375 EEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434
+ + E +L E + + PG+ H PG+ R+ + A++RI F
Sbjct: 356 RDIKTDVEFFEK--LLEEENVQVLPGTIFHA--PGFTRLTTT-RPVEVYREAVERIKAFC 410
Query: 435 QKR 437
Q+
Sbjct: 411 QRH 413
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 4e-50
Identities = 70/349 (20%), Positives = 151/349 (43%), Gaps = 42/349 (12%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
G +F+++++ +I+ T GAT AN L+ + L +PGD ++ P Y
Sbjct: 64 GSPAFKKSVSQLYT-------GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQ 116
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA 215
D+ G ++ + N + + L + + + I N +NP GA
Sbjct: 117 QLY-DIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP------TTKMICINNANNPTGA 169
Query: 216 TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275
+ R+ LEEL++ A+ +++SDE+Y + + I+E ++ V S
Sbjct: 170 VMDRTYLEELVEIASEVGAYILSDEVYRS-----FSELDVPSIIEVY-----DKGIAVNS 219
Query: 276 LSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLI--SSQTQYLLASMLSNKKFTENYIK 333
LSK LPG R+G + + N +V R +T+I + L++ + ++
Sbjct: 220 LSKTYSLPGIRIGWVAA-NHQVTDILRDYRDYTMICAGVFDDLVAQLALAHY---QEILE 275
Query: 334 TNRERLQKRYQMIIEGLRS-AGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHE 392
NR L++ ++ + + + ++ ++ ++ + + + L +L E
Sbjct: 276 RNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPME----DFCLQ--LLQE 329
Query: 393 VKLNISPGSSCHC-SEPGWFRVCFANMSEQTLEVALKRIHNFMQKRERR 440
+ + PG+ G+ R+ FA ++TL L+++ F+++ ++
Sbjct: 330 HGVLLVPGN---RFERDGYVRLGFAC-EQETLIKGLEKLSQFLRRFDKE 374
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 6e-46
Identities = 67/364 (18%), Positives = 134/364 (36%), Gaps = 57/364 (15%)
Query: 92 QDYHGLKSFRQAMASFMEQIRGGRAKFDL-----NRIVVTAGATAANELLTFILADPGDA 146
G+ R+A++ + ++D+ + +VT G+ L D GD
Sbjct: 72 STSRGIPRLRRAISHWYRD------RYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDT 125
Query: 147 LLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206
+LVP P YP G ++ + +F + + R +++
Sbjct: 126 ILVPNPSYPIHIYGAVI-AGAQVRSVPLVPGIDFFNELERAIRESIP------KPRMMIL 178
Query: 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKD 266
PSNP ++ E ++ A + ++ +V D Y+ + + SI ++ A+
Sbjct: 179 GFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAK---- 234
Query: 267 SERVHIVYSLSKDLGLPGFRVG-------------TIYSYNDKVVTTARRMSSFTLISSQ 313
+ ++LSK + G+R+G I SY+D +FT +
Sbjct: 235 -DIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYHD--------YGTFTPL--- 282
Query: 314 TQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPL 373
Q + L + ++ + Q+R ++++GLR AG A ++ W +
Sbjct: 283 -QVAAIAALEG---DQQCVRDIARQYQQRRDVLVKGLREAGWMVENPKASMYVWA---KI 335
Query: 374 LEEQTREGELALWDSMLHEVKLNISPGSSC-HCSEPGWFRVCFANMSEQTLEVALKRIHN 432
E G L +L + K+++SPG + R + L A++ I
Sbjct: 336 PEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGD-DHVRFALI-ENRDRLRQAVRGIKA 393
Query: 433 FMQK 436
+
Sbjct: 394 MFRA 397
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 163 bits (415), Expect = 2e-45
Identities = 71/370 (19%), Positives = 148/370 (40%), Gaps = 27/370 (7%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA-NELLTFILADPGDALLVPTPYY 154
G+ R A+AS + R G + + I +T GA+ + ++ ++ + D +LVP P Y
Sbjct: 135 GIHGLRDAIASGIAS-RDG-FPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQY 192
Query: 155 PGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLG 214
P + + G +VP + + S + + ++ ++A S+ + VR +++ NP NP G
Sbjct: 193 PLYSASIA-LHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTG 251
Query: 215 ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS-SSEFVSIAEILEARQYKDSERVHIV 273
+ +++ F + + L++DE+Y + + + +F S +I+ + Y + + +
Sbjct: 252 QVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVS 311
Query: 274 Y-SLSK-DLGLPGFRVG--TIYSYNDKVVTTARRMSSFTLISS-QTQYLLASMLSNKKFT 328
Y S+SK G G R G I ++ V +++S L S+ Q L + +++ K +
Sbjct: 312 YQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKAS 371
Query: 329 E-------NYIKTNRERLQKRYQMIIEGLRS-AGIECLKGNAGLFCWMNLSPLLEEQTRE 380
+ L +R + + GI C + ++ + + +
Sbjct: 372 DESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAA 431
Query: 381 GELALWDSM------LHEVKLNISPGSSCHCSE-PGWFRVCFANMSEQTLEVALKRIHNF 433
L + + PGS FR E + + R F
Sbjct: 432 KAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILP-QEDKIPAVISRFTVF 490
Query: 434 MQK-RERRRN 442
+ R+
Sbjct: 491 HEAFMSEYRD 500
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 2e-44
Identities = 84/356 (23%), Positives = 143/356 (40%), Gaps = 41/356 (11%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
GL R+A+ + R + + VTA T A +L+ L DPGD +LVP P YP
Sbjct: 79 GLPELRKAIVEREK--RKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYP 136
Query: 156 GFDRDLRWR-----TGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPS 210
+ G K V ++Q + + R + + + NP+
Sbjct: 137 P------YTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD------RTKAIAVINPN 184
Query: 211 NPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERV 270
NP GA + LEE+L+ A I ++SDEIY + E +S + V
Sbjct: 185 NPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTY-EGEHISPGSL------TKDVPV 237
Query: 271 HIVYSLSKDLGLPGFRVGTIYSYNDKVVTTA-----RRMSSFTL-ISSQTQYLLASMLSN 324
++ LSK G+R+G +Y + + + R++ L ++ Q+ + L+
Sbjct: 238 IVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTG 297
Query: 325 KKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSPLLEEQTREGEL 383
+Y+K ++L++R I + L GI K + + + + + E
Sbjct: 298 ---PMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDK--EF 352
Query: 384 ALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439
L +LH + GS G FR F + LE A+ R FM++R +
Sbjct: 353 VLD--VLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMDRFEKFMKERLK 405
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 6e-44
Identities = 74/353 (20%), Positives = 141/353 (39%), Gaps = 50/353 (14%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
GL + RQ +A + G D R+V+T G++ L L D GD + + P YP
Sbjct: 69 GLPALRQRIARLYGEWYG--VDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYP 126
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA 215
+ + LR G+ V + N Q P + G+++ +P+NP G
Sbjct: 127 SYRQILRA-LGLVPVDLPTAPENRLQPVPADFAGL---------DLAGLMVASPANPTGT 176
Query: 216 TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275
+ + + L++ A + +SDEIY G + ++ V+ E+ ++ +++ S
Sbjct: 177 MLDHAAMGALIEAAQAQGASFISDEIYHGIEY-EAKAVTALEL--------TDECYVINS 227
Query: 276 LSKDLGLPGFRVGTIYSY---NDKVVTTARRMSSFTLIS--SQTQY--LLASMLSNKKFT 328
SK + G+RVG + + V R++ I +Q L A
Sbjct: 228 FSKYFSMTGWRVG----WMVVPEDQVRVVERIAQNMFICAPHASQVAALAA-------LD 276
Query: 329 -ENYIKTNRERLQKRYQMIIEGLRSAG-IECLKGNAGLFCWMNLSPLLEEQTREGELALW 386
+ ++ N + + ++++E L AG + + + ++S + A
Sbjct: 277 CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVS-----DLTDDSRAFA 331
Query: 387 DSMLHEVKLNISPGSS--CHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437
+L + + ++PG G R +A + +E L R+ FMQ R
Sbjct: 332 AEILEKAGVAVTPGLDFDPERGA-GTLRFSYAR-ATADIEEGLDRLEAFMQAR 382
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 2e-43
Identities = 48/377 (12%), Positives = 101/377 (26%), Gaps = 59/377 (15%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA--NELLTFILA--DPGDALLVPT 151
GL +Q + F + V T G+ L + L
Sbjct: 83 GLPELKQEASRFAKLFVN--IDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFID 140
Query: 152 PYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSN 211
P + R G K ++ + + ++ +NP+N
Sbjct: 141 PGFNLNKLQCRI-LGQKFESFDLFEYRGEKLREKLESYLQTG------QFCSIIYSNPNN 193
Query: 212 PLGATIQRSVLEELLDFATRKNIHLVSDEIYS-----GSAFSSSEFVSIAEILEARQYKD 266
P + L + + AT+ ++ ++ D Y E + +
Sbjct: 194 PTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYT---- 249
Query: 267 SERVHIVYSLSKDLGLPGFRVG-------TIYSYNDKVVTTARRMSSFTLISSQTQYLLA 319
+ + S SK G R+G + + R+ +SS Y L+
Sbjct: 250 -DNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALS 308
Query: 320 S------------MLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG---- 363
S ML E + + ++ +++ + G + G
Sbjct: 309 SGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPL 368
Query: 364 ----LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMS 419
F + + +L + I+ ++ R+C + +
Sbjct: 369 ADGFYF------TVGYKGMDSSKLIEK--FVRYGMCAITLKTTGSKRNEA-MRICTSLLP 419
Query: 420 EQTLEVALKRIHNFMQK 436
E KR+ +
Sbjct: 420 ESQFPDLEKRLQMLNAE 436
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 5e-43
Identities = 71/356 (19%), Positives = 130/356 (36%), Gaps = 52/356 (14%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA-NELLTFILADPGDALLVPTPYY 154
G R A+A F+ G F+ + + +T GA A+ + + +D D + PY+
Sbjct: 77 GDVETRAAIAEFLNNTHG--THFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYF 134
Query: 155 PGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLG 214
P + + G ++V + D+ +FQI ALE RGV+I +P+NP G
Sbjct: 135 PEY-KVFVNAAGARLVEVPADT-EHFQIDFDALEERINA------HTRGVIINSPNNPSG 186
Query: 215 ATIQRSVLEELLDFATRKN------IHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSE 268
+++L D +K+ I +++DE Y + + + + +
Sbjct: 187 TVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKY--------YD 238
Query: 269 RVHIVYSLSKDLGLPGFRVG------TIYSYNDKV--VTTARRMSSFTLISSQTQYLLAS 320
+ YS SK L LPG R+G +Y + V A R + S Q ++
Sbjct: 239 NTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVK 298
Query: 321 MLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTRE 380
Y ++ ++ EGL G C K + + ++
Sbjct: 299 CQGATGDINAY--------KENRDLLYEGLTRIGYHCFKPDGAFYMFVKALEDDSN---- 346
Query: 381 GELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436
E + I C PGW R+ + + ++ ++ +K
Sbjct: 347 -AFCEK---AKEEDVLIVAADGFGC--PGWVRISYCV-DREMIKHSMPAFEKIYKK 395
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 1e-41
Identities = 72/352 (20%), Positives = 150/352 (42%), Gaps = 39/352 (11%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDL-----NRIVVTAGATAA--NELLTFILADPGDALL 148
GL R+A+A +++ + + I+V GA A L F+ G+ +L
Sbjct: 64 GLLELREAIAEKLKK------QNGIEADPKTEIMVLLGANQAFLMGLSAFL--KDGEEVL 115
Query: 149 VPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITN 208
+PTP + + + G K V + + F++ L+ + + R ++I +
Sbjct: 116 IPTPAFVSYAPAVIL-AGGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALIINS 168
Query: 209 PSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSE 268
P NP GA + + LEE+ DF ++ ++SDE+Y + + SIA + E
Sbjct: 169 PCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMF-----E 223
Query: 269 RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTA-RRMSSFTL--ISSQTQYLLASMLSNK 325
R V SK + G+R+G + + + + + QY A L ++
Sbjct: 224 RTITVNGFSKTFAMTGWRLG--FVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDE 281
Query: 326 KFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELAL 385
+ + ++ R+ +R +++ + L G+ +K + + + + +
Sbjct: 282 R-SWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRDTGLTSK---KFSE 337
Query: 386 WDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437
ML E ++ + PGS+ + G+ R+ +A + + LE A+ R+ +++R
Sbjct: 338 L--MLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLKER 386
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 148 bits (377), Expect = 6e-41
Identities = 85/378 (22%), Positives = 146/378 (38%), Gaps = 50/378 (13%)
Query: 79 GKGAPGF------RE---NALFQDYH------GLKSFRQAMASFMEQIRGGRAKFD-LNR 122
+G P F +E + + Q + G+++ R+A+A E++ G + D +
Sbjct: 36 SQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYG--YQPDADSD 93
Query: 123 IVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNF 180
I VTAGAT A L I A GD ++ P Y + + +G + + +F
Sbjct: 94 ITVTAGATEA--LYAAITALVRNGDEVICFDPSYDSYAPAIA-LSGGIVKRMALQP-PHF 149
Query: 181 QITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDE 240
++ Q A E R R V++ P NP Q++ L I ++SDE
Sbjct: 150 RVDWQEFAALLSE------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDE 203
Query: 241 IYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT 300
+Y FS S+ + R ER V S K + G++VG Y ++
Sbjct: 204 VYEHINFSQQGHASVLAHPQLR-----ERAVAVSSFGKTYHMTGWKVG--YCVAPAPISA 256
Query: 301 A-RRMSSFTLISSQT--QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIEC 357
R++ + S T Q LA ML + + + +++ +++ L + +E
Sbjct: 257 EIRKVHQYLTFSVNTPAQLALADML---RAEPEHYLALPDFYRQKRDILVNALNESRLEI 313
Query: 358 LKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPG--WFRVCF 415
L F ++ S + + E W + E + P S R+CF
Sbjct: 314 LPCEGTYFLLVDYSAVSTL--DDVEFCQW--LTQEHGVAAIPLSVFCADPFPHKLIRLCF 369
Query: 416 ANMSEQTLEVALKRIHNF 433
A E TL A +R+
Sbjct: 370 AK-KESTLLAAAERLRQL 386
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 8e-41
Identities = 74/363 (20%), Positives = 145/363 (39%), Gaps = 53/363 (14%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPY-- 153
G+ R+A AS+ ++ + ++VT G + A ++A+PGD +LV P+
Sbjct: 80 GIWELREAFASYYKRRQR--VDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYA 137
Query: 154 -YPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP 212
Y F + G+K++P+ F PQ LE+ E R +G++++NP NP
Sbjct: 138 NYNAFAK----IAGVKLIPVTRRMEEGFA-IPQNLESFINE------RTKGIVLSNPCNP 186
Query: 213 LGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHI 272
G + + L++ A R + L+ DE+YS F EF S I ++V +
Sbjct: 187 TGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVF-RGEFASALSIES-------DKVVV 238
Query: 273 VYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL-ISSQTQYLLASMLSNKKFTENY 331
+ S+SK G RVG + + N+++++ A +++ L Q +L+ +++
Sbjct: 239 IDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNL---DDSF 295
Query: 332 IKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSP---------LLEEQTREG 381
RE ++R + +++ L K + + L +L + +G
Sbjct: 296 FDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDG 355
Query: 382 ELALWDSMLHEVKLNISPGS---SCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438
E ++P R+ + L A+ + ++
Sbjct: 356 E-----------TTMVAPLRGFYLTPGLGKKEIRIACVL-EKDLLSRAIDVLMEGLKMFC 403
Query: 439 RRR 441
R
Sbjct: 404 SSR 406
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 8e-41
Identities = 60/366 (16%), Positives = 136/366 (37%), Gaps = 62/366 (16%)
Query: 92 QDYHGLKSFRQAMASFMEQIRGGRAKFDL-----NRIVVTAGATAANELLTFILADPGDA 146
+HG ++F+QA+ F ++ ++++ + + + G + + +PGD
Sbjct: 82 GAFHGKEAFKQAIVDFYQR------QYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDY 135
Query: 147 LLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206
+L+P P Y + + K VP++ + ++ +++ + + + + +
Sbjct: 136 VLLPDPGYTDYLAGVLL-ADGKPVPLNLEP-PHYLPDWSKVDSQIID------KTKLIYL 187
Query: 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKD 266
T P+NP G+T + V +E + + +V D Y F ++ SI +
Sbjct: 188 TYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGF-DAKNPSILASENGK---- 242
Query: 267 SERVHIVYSLSKDLGLPGFRVG-------------TIYSYNDKVVTTARRMSSFTLISSQ 313
+ +YSLSK + GFRVG ++ + F +
Sbjct: 243 -DVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKYQTHTN--------AGMFGAL--- 290
Query: 314 TQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPL 373
Q L++ +++++ + R L A + + G++ W+
Sbjct: 291 -QDAAIYALNH---YDDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAKGGIYVWLETP-- 344
Query: 374 LEEQTREGELALWDSMLHEVKLNISPGSSC-HCSEPGWFRVCFANMSEQTLEVALKRIHN 432
E + ++ E + ++PG + R+ A + +Q L+ A R+
Sbjct: 345 -PGYDSE-QFE--QFLVQEKSILVAPGKPFGENGN-RYVRISLA-LDDQKLDEAAIRLTE 398
Query: 433 FMQKRE 438
E
Sbjct: 399 LAYLYE 404
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 8e-41
Identities = 74/392 (18%), Positives = 140/392 (35%), Gaps = 59/392 (15%)
Query: 79 GKGAPGF------RE---NALFQDYH------GLKSFRQAMASFMEQIRGGRAKFD-LNR 122
G+G P + +A+ + G R+A+A+ + G +D
Sbjct: 31 GQGFPDEDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFG--VDYDPETE 88
Query: 123 IVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD-SSNN 179
++VT GAT A + +L +PG +L+ P+Y + + G V +
Sbjct: 89 VLVTVGATEA--IAAAVLGLVEPGSEVLLIEPFYDSYSPVVA-MAGAHRVTVPLVPDGRG 145
Query: 180 FQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSD 239
F + AL A R R ++I +P NP GA + + L + + A N+ +++D
Sbjct: 146 FALDADALRRAVTP------RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITD 199
Query: 240 EIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVT 299
E+Y F + + +A ER + S +K G+++G ++ +
Sbjct: 200 EVYEHLVFDHARHLPLAGFDGMA-----ERTITISSAAKMFNCTGWKIG--WACGPAELI 252
Query: 300 TA-RRMSSFTLISSQT--QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIE 356
R + Q +A L + + ++ R L+ R + GL G
Sbjct: 253 AGVRAAKQYLSYVGGAPFQPAVALALDTE---DAWVAALRNSLRARRDRLAAGLTEIGFA 309
Query: 357 CLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSS-CHCSEPG------ 409
F + PL E + +V + P S+ C +
Sbjct: 310 VHDSYGTYFLCADPRPL--GYDDSTEFCAA--LPEKVGVAAIPMSAFCDPAAGQASQQAD 365
Query: 410 ----WFRVCFANMSEQTLEVALKRIHNFMQKR 437
R F + TL+ A++R+ ++
Sbjct: 366 VWNHLVRFTFCK-RDDTLDEAIRRLSVLAERP 396
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 5e-40
Identities = 71/367 (19%), Positives = 144/367 (39%), Gaps = 30/367 (8%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGD----ALLVPT 151
G+ R+ +A+++ + R G D + I +T GA+ + IL G +++P
Sbjct: 130 GVNCIREDVAAYITR-RDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPI 188
Query: 152 PYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSN 211
P YP + + V + D N + + L A +EA + + I NP N
Sbjct: 189 PQYPLYSAVIS-ELDAIQVNYYLDEENCWALNVNELRRAVQEA-KDHCDPKVLCIINPGN 246
Query: 212 PLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS-SSEFVSIAEILEARQYKDSERV 270
P G R +E+++ FA + + L++DE+Y + +S F S ++L + S V
Sbjct: 247 PTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNV 306
Query: 271 HIV--YSLSKD-LGLPGFRVG--TIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSN- 324
+ +S SK +G G+R G + + + ++ ++ S L + ++ N
Sbjct: 307 ELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNP 366
Query: 325 -------KKFTENYIKTNRERLQKRYQMIIEGLRS-AGIECLKGNAGLFCWMNLSPLLEE 376
+ ++ L K+ ++ + GI C ++ + + +
Sbjct: 367 PVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKA 426
Query: 377 QTREGELALWDSM------LHEVKLNISPGSSCHCSEPGW-FRVCFANMSEQTLEVALKR 429
+ M L E + + PGS E + FR+ + L+ L++
Sbjct: 427 VEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILP-PVEKLKTVLQK 485
Query: 430 IHNFMQK 436
+ +F
Sbjct: 486 VKDFHIN 492
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 6e-40
Identities = 54/360 (15%), Positives = 127/360 (35%), Gaps = 39/360 (10%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
G++ R M + + +++R +VT T L+ + + D +L+P +
Sbjct: 89 GIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWG 148
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITN-PSNPLG 214
+ R G + + + T +L A + + ++I N P+NP G
Sbjct: 149 NYKLVFNTRNGAN-LQTYPIFDKDGHYTTDSLVEALQSYNKDKV----IMILNYPNNPTG 203
Query: 215 ATIQRSVLEELLDFA-----TRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSER 269
T + +++ + V D+ Y G + S+ L + ++
Sbjct: 204 YTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTAL-TNLHSNAIL 262
Query: 270 VHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQT---------QYLLAS 320
+ +K+ GFRVG + ++ TT + + ++ Q +
Sbjct: 263 PIRLDGATKEFFAWGFRVGFM-TFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKH 321
Query: 321 MLSN----KKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEE 376
+L N K E I+T +ER + +++ + + N+G F + + + E
Sbjct: 322 VLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVHDVDPE 381
Query: 377 QTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436
R+ ++ + + + ++ R+ F+ + + + I +
Sbjct: 382 ALRK-------HLIDKYSIGVIALNATD------IRIAFSCVEKDDIPHVFDSIAKAIDD 428
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 4e-39
Identities = 72/368 (19%), Positives = 141/368 (38%), Gaps = 50/368 (13%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFD-LNRIVVTAGATAANELLTFILA--DPGDALLVPTP 152
G + +A++ +I + D I+V GA + L I DPGD +++ P
Sbjct: 62 GHPALVKALSCLYGKIYQ--RQIDPNEEILVAVGAYGS--LFNSIQGLVDPGDEVIIMVP 117
Query: 153 YYPGFDRDLRWRTGIKIVPI---------HCDSSNNFQITPQALEAAYKEAESKDMRVRG 203
+Y ++ +R G V I +S+++ P+ LE+ + + +
Sbjct: 118 FYDCYEPMVR-MAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS------KTKA 170
Query: 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQ 263
+++ P NPLG R L+ + D + + +SDE+Y ++ V IA +
Sbjct: 171 IILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMW- 229
Query: 264 YKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQT--QYLLASM 321
ER + S K + G+++G ++ + + + + T Q LA
Sbjct: 230 ----ERTITIGSAGKTFSVTGWKLGWSIG-PAHLIKHLQTVQQNSFYTCATPLQAALAEA 284
Query: 322 LSN----KKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPL---- 373
E Y + + L+ + ++ L S G++ + + G F ++S L
Sbjct: 285 FWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADL 344
Query: 374 ---LEEQTREGELALWDSMLHEVKLNISPGSSCHCSEP-----GWFRVCFANMSEQTLEV 425
++ + + W M KL P S+ S+ R CF + TL+
Sbjct: 345 SDMNSDEPYDYKFVKW--MTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK-KDSTLDA 401
Query: 426 ALKRIHNF 433
A + +
Sbjct: 402 AEEIFRAW 409
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 8e-39
Identities = 83/354 (23%), Positives = 136/354 (38%), Gaps = 48/354 (13%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPY 153
GL + R+A+A + +VVT+GAT A L + + PGD ++V P+
Sbjct: 62 GLPALREALAEEFA--------VEPESVVVTSGATEA--LYVLLQSLVGPGDEVVVLEPF 111
Query: 154 YPGFDRDLRWRTGIKIVPIHCD-SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP 212
+ + D G K + D + F++ ALE A R R +L+ P NP
Sbjct: 112 FDVYLPDAF-LAGAKARLVRLDLTPEGFRLDLSALEKALTP------RTRALLLNTPMNP 164
Query: 213 LGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHI 272
G LE + A ++ L+SDE+Y + ER
Sbjct: 165 TGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFA--------PERTFT 216
Query: 273 VYSLSKDLGLPGFRVGTIYSYNDKVVTTA-RRMSSFTLISSQT--QYLLASMLSNKKFTE 329
V S K L G+RVG + K M +T S+ T Q +A L + E
Sbjct: 217 VGSAGKRLEATGYRVG--WIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR-RE 273
Query: 330 NYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSM 389
+ + RE ++R ++ GLR+ G+ F L A +
Sbjct: 274 GFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGW---------DAFR--L 322
Query: 390 LHEVKLNISPGSSCHCSEPG--WFRVCFANMSEQTLEVALKRIHNFMQKRERRR 441
+ E ++ + P S+ + +P FR F +E+ L +AL+R+ +
Sbjct: 323 VEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVNSPREAE 375
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 1e-38
Identities = 73/368 (19%), Positives = 136/368 (36%), Gaps = 50/368 (13%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFD-LNRIVVTAGATAANELLTFILA--DPGDALLVPTP 152
G QA++ Q+ + + ++VT GA A L I D GD +++ P
Sbjct: 78 GHPRLVQALSKLYSQLVD--RTINPMTEVLVTVGAYEA--LYATIQGHVDEGDEVIIIEP 133
Query: 153 YYPGFDRDLRWRTGIKIVPI--------HCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204
++ ++ ++ G I SS ++ + LEA + E + + +
Sbjct: 134 FFDCYEPMVK-AAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE------KTKMI 186
Query: 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQY 264
+I P NPLG + R+ LE + + + N+ VSDE+Y F E + I +
Sbjct: 187 IINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMW-- 244
Query: 265 KDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQT--QYLLASML 322
ER + S K L G+++G Y + ++ + + + + T Q +A
Sbjct: 245 ---ERTITIGSAGKTFSLTGWKIGWAYG-PEALLKNLQMVHQNCVYTCATPIQEAIAVGF 300
Query: 323 SNK----KFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPL----- 373
+ K E Y + L + + L G+ G F + S L
Sbjct: 301 ETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVD 360
Query: 374 ---LEEQTREGELALWDSMLHEVKLNISPGSSCHCSEP-----GWFRVCFANMSEQTLEV 425
+ ++ W M V L P S+ + + R CF ++ L+
Sbjct: 361 LTQETDARKDYRFTKW--MTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK-KDENLQK 417
Query: 426 ALKRIHNF 433
A + + +
Sbjct: 418 AAEILRKW 425
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 1e-38
Identities = 62/371 (16%), Positives = 134/371 (36%), Gaps = 50/371 (13%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPY 153
G S ++ I + + VT GA +L+ ++ + GD ++V P+
Sbjct: 96 GRPSLINSLIKLYSPIYN--TELKAENVTVTTGANEG--ILSCLMGLLNAGDEVIVFEPF 151
Query: 154 YPGFDRDLRWRTGIKIVPI----------HCDSSNNFQITPQALEAAYKEAESKDMRVRG 203
+ + ++ G K+V + + I + E A + +
Sbjct: 152 FDQYIPNIE-LCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS------KTKA 204
Query: 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQ 263
V+I P NP+G R L L + + N+ ++SDE+Y F+ S E
Sbjct: 205 VIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIG- 263
Query: 264 YKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQT--QYLLASM 321
+ V S K G+R+G + S N ++++ A + + +S + Q A+
Sbjct: 264 ----QLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANS 319
Query: 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPL-------- 373
+ N Y + R+ ++++ G+ F ++ S +
Sbjct: 320 I-NDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPY 378
Query: 374 ---LEEQTREGELALWDSMLHEVKLNISPGSSCHCSE-----PGWFRVCFANMSEQTLEV 425
+ + ++ ++ W +++E+ + P + + E R + LE
Sbjct: 379 PEEILNKGKDFRISHW--LINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK-DDAYLEN 435
Query: 426 ALKRIHNFMQK 436
A++R+
Sbjct: 436 AVERLKLLKDY 446
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 2e-38
Identities = 72/374 (19%), Positives = 142/374 (37%), Gaps = 53/374 (14%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFD-LNRIVVTAGATAANELLTFILA--DPGDALLVPTP 152
G + +ASF ++ G + D L ++VT G A L T A D GD +++ P
Sbjct: 68 GYPPLTKILASFFGELLG--QEIDPLRNVLVTVGGYGA--LFTAFQALVDEGDEVIIIEP 123
Query: 153 YYPGFDRDLRWRTGIKIVPI----------HCDSSNNFQITPQALEAAYKEAESKDMRVR 202
++ ++ G + V + SS+N+Q+ P L + R +
Sbjct: 124 FFDCYEPMTM-MAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS------RTK 176
Query: 203 GVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEAR 262
+++ P+NPLG R LE + + ++ ++DE+Y + + +SIA +
Sbjct: 177 ALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMW 236
Query: 263 QYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQT--QYLLAS 320
ER + S K G++VG + D ++ R + ++ T Q +A
Sbjct: 237 -----ERTLTIGSAGKTFSATGWKVGWVLG-PDHIMKHLRTVHQNSVFHCPTQSQAAVAE 290
Query: 321 MLSN----KKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPL--- 373
+ +Y + +Q+ +I L+S G++ + F ++S
Sbjct: 291 SFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRK 350
Query: 374 ------LEEQTREGELALWDSMLHEVKLNISPGSSCHCSEP-----GWFRVCFANMSEQT 422
++ + W M+ L P S + + R CF E T
Sbjct: 351 MPDLPGAVDEPYDRRFVKW--MIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DEAT 407
Query: 423 LEVALKRIHNFMQK 436
L+ +++ + +
Sbjct: 408 LQAMDEKLRKWKVE 421
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 2e-38
Identities = 65/370 (17%), Positives = 117/370 (31%), Gaps = 81/370 (21%)
Query: 92 QDYHGLKSFRQAMASFMEQIRGGRAKFDL-----NRIVVTAGATAANELLTFILADPGDA 146
F + A + E ++ + + G+ L L +P D
Sbjct: 60 CLKSCTLPFLEEAARWYEG------RYGVGLDPRREALALIGSQEGLAHLLLALTEPEDL 113
Query: 147 LLVPTPYYPGFDRDLRWRTGIKI---VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRG 203
LL+P YP + ++ + +A+ +
Sbjct: 114 LLLPEVAYPSY------FGAARVASLRTFLIPLREDGLADLKAVPEGVWR------EAKV 161
Query: 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQ 263
+L+ P+NP GA EE L A + + L+ D Y + E S + A+
Sbjct: 162 LLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVY-EGEAPSPLALPGAK- 219
Query: 264 YKDSERVHIVYSLSKDLGLPGFRVG-------------TIYSYNDKVVTTARRMSSFTLI 310
ERV ++SLSK L GFR+G + D + + +
Sbjct: 220 ----ERVVELFSLSKSYNLAGFRLGFALGSEEALARLERVKGVID--------FNQYAGV 267
Query: 311 SSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNL 370
+ L + ++ ++R + E L+ + L A ++ W L
Sbjct: 268 ----LRMGVEALKT---PKEVVRGYARVYRERALGMAEALK-GVLSLLPPRATMYLWGRL 319
Query: 371 SPLLEEQTREGELALWDSM-----LHEVKLNISPGSS-CHCSEPGWFRVCFANMSEQTLE 424
EG D + L E + ++PG + G+ R+ + L
Sbjct: 320 --------PEG----VDDLEFGLRLVERGVALAPGRGFGPGGK-GFVRIALV-RPLEELL 365
Query: 425 VALKRIHNFM 434
A KRI +
Sbjct: 366 EAAKRIREAL 375
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 4e-38
Identities = 72/359 (20%), Positives = 121/359 (33%), Gaps = 46/359 (12%)
Query: 92 QDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGA-TAANELLTFILADPGDALLVP 150
GL + RQ ++ R D I ++ GA LL+F P + +
Sbjct: 72 GPDFGLPALRQKLSEDFY-----RGFVDAKEIFISDGAKVDLFRLLSFF--GPNQTVAIQ 124
Query: 151 TPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPS 210
P YP + R +I+ + C N F + + + +P+
Sbjct: 125 DPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPEDT-----------HIDILCLCSPN 173
Query: 211 NPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERV 270
NP G + + L ++ +A I ++ D YS S SI EI +AR
Sbjct: 174 NPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDAR-----FCA 228
Query: 271 HIVYSLSKDLGLPGFRVG-------TIYSYNDKVVTTARRMSS--FTLISSQTQYLLASM 321
+ S SK LG G R+G Y+ V+ R S F S Q +
Sbjct: 229 IEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAG 288
Query: 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREG 381
LS E ++ ++ + L + G E G + W+ +
Sbjct: 289 LSILPQLE-----AIHYYRENSDLLRKALLATGFEVFGGEHAPYLWVKPTQ-----ANIS 338
Query: 382 ELALWDSMLHEVKLNISPGSS-CHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439
+ L+D L E + I+PG G+ R + + A +R+ +
Sbjct: 339 DRDLFDFFLREYHIAITPGIGFGRSGS-GFVRFSSLG-KREDILAACERLQMAPALQSH 395
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 3e-37
Identities = 63/350 (18%), Positives = 126/350 (36%), Gaps = 33/350 (9%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFD-LNRIVVTAGATAANELLTFILADPGDALLVPTPYY 154
G R +A + G A D + +++T G A L GD + + P Y
Sbjct: 79 GDLGIRDLLAPRLAAFTG--APVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDY 136
Query: 155 PGFDRDLRWRTGIKIVPIHCDSS----NNFQITPQALEAAYKEAESKDMRVRGVLITNPS 210
R L ++VP+ D + LE A+K R L +NP+
Sbjct: 137 FAN-RKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA------GARVFLFSNPN 189
Query: 211 NPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERV 270
NP G + ++ A R +++D++YS ++ + + + D+E V
Sbjct: 190 NPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAV----DAENV 245
Query: 271 HIVYSLSKDLGLPGFRVGTIYSYNDKVVTTA-RRMSSFTL--ISSQTQYLLASMLSNKKF 327
+ SK L G+R+G ++ + + ++ + + +Q +L
Sbjct: 246 VTIMGPSKTESLSGYRLG--VAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE--- 300
Query: 328 TENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSPLLEEQTREGELALW 386
+++ R Q ++ LR G+ AG + + L L E
Sbjct: 301 APGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPA---EFVKI 357
Query: 387 DSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436
+ + + ++PG+ R+ F+ + A +RI +++
Sbjct: 358 --LRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLVER 404
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 4e-37
Identities = 71/369 (19%), Positives = 122/369 (33%), Gaps = 55/369 (14%)
Query: 92 QDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATA--ANELLTFILADPGDALLV 149
G + R+A+AS G + I ++ G+ A + F + V
Sbjct: 108 GAEQGQGALREAVASTFYGHAG----RAADEIFISDGSKCDIARIQMMF---GSKPTVAV 160
Query: 150 PTPYYP---------GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMR 200
P YP G D I + C+ N+F + R
Sbjct: 161 QDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAK-----------R 209
Query: 201 VRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILE 260
+ +P+NP GA R+ L EL++FA + LV D Y+ + +I EI
Sbjct: 210 TDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPG 269
Query: 261 ARQYKDSERVHIVYSLSKDLGLPGFRVG-------TIYSYNDKVVTTARRMSS--FTLIS 311
A E S SK G G R+G Y+ + V R+ + F S
Sbjct: 270 AD-----EVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGAS 324
Query: 312 SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLS 371
+ Q + L + + + ++ Q++ G G+ + W+
Sbjct: 325 NIVQAGGLACLQPE--GLKEMNAMIKFYKENAQILKTTFTEMGFSVYGGDDAPYIWVGF- 381
Query: 372 PLLEEQTREGELALWDSMLHEVKLNISPGSSC-HCSEPGWFRVCFANMSEQTLEVALKRI 430
+ ++ +L + +PGS E G+ R S + + A++R
Sbjct: 382 ------PGKPSWDVFAEILERCNIVTTPGSGYGPAGE-GFVRASAFG-SRENILEAVRRF 433
Query: 431 HNFMQKRER 439
KR
Sbjct: 434 KEAYGKRNA 442
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 8e-36
Identities = 77/344 (22%), Positives = 151/344 (43%), Gaps = 43/344 (12%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
G+ R+ ++ + A + I++T G++ + D GD +L+ P YP
Sbjct: 67 GILELREKISELYKDKYK--ADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYP 124
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA 215
+ +R+ G K V T ++LE A + + + ++I +PSNPLG
Sbjct: 125 CYKNFIRF-LGAKPVFC--------DFTVESLEEALSD------KTKAIIINSPSNPLGE 169
Query: 216 TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275
I R E+ +FA +++SDEIY+G + + S E E E+ ++
Sbjct: 170 VIDR----EIYEFAYENIPYIISDEIYNGLVY-EGKCYSAIEFDENL-----EKTILING 219
Query: 276 LSKDLGLPGFRVGTIYSY-NDKVVTTARRMSSFTLI--SSQTQYLLASMLSNKKFTENYI 332
SK + G+R+G Y ND+++ ++ I + +QY A++ + +K TE I
Sbjct: 220 FSKLYAMTGWRIG--YVISNDEIIEAILKLQQNLFISAPTISQY--AALKAFEKETEREI 275
Query: 333 KTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHE 392
+ + +R +++++ ++ G E + + N+ E +L E
Sbjct: 276 NSMIKEFDRRRRLVLKYVKDFGWEVNNPIGAYYVFPNIG--------EDGREFAYKLLKE 327
Query: 393 VKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436
+ ++PG + R+ +AN S + ++ L+RI F+ K
Sbjct: 328 KFVALTPGIGFGSKGKNYIRISYAN-SYENIKEGLERIKEFLNK 370
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 2e-35
Identities = 80/333 (24%), Positives = 142/333 (42%), Gaps = 49/333 (14%)
Query: 117 KFDLNRIVVTAGA--TAANELLTFILADPGDALLVPTPY---YPGFDRDLRWRTGIKIVP 171
+VT G N + DPGD ++V +PY YP ++ G +V
Sbjct: 88 SVTPEETIVTVGGSQALFNLFQAIL--DPGDEVIVLSPYWVSYP----EMVRFAGGVVVE 141
Query: 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATR 231
+ F P+ + A R + +++ +P+NP GA + VLE L A
Sbjct: 142 VETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARLAVE 195
Query: 232 KNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIY 291
+ +LVSDEIY + E S + E V +K + G+R+G Y
Sbjct: 196 HDFYLVSDEIYEHLLY-EGEHFSPGRVAP-------EHTLTVNGAAKAFAMTGWRIG--Y 245
Query: 292 SYNDKVVTTARRMSSFTLISSQT--------QYLLASMLSNKKFTENYIKTNRERLQKRY 343
+ K V A M+S +S Q+ Q+ L+N++ + +++ RE ++R
Sbjct: 246 ACGPKEVIKA--MAS---VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRR 300
Query: 344 QMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSC 403
+++EGL + G++ ++ + + M+ SP+ E A L E + + PG+
Sbjct: 301 DLLLEGLTALGLKAVRPSGAFYVLMDTSPIA---PDEVRAAER---LLEAGVAVVPGTD- 353
Query: 404 HCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436
+ G R+ +A SE+ L AL+R + +
Sbjct: 354 -FAAFGHVRLSYAT-SEENLRKALERFARVLGR 384
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 1e-34
Identities = 71/364 (19%), Positives = 117/364 (32%), Gaps = 54/364 (14%)
Query: 94 YHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPY 153
G K R A+A G + + V+ GA L + + V P
Sbjct: 97 EQGAKPLRAAIAKTFYGGLG----IGDDDVFVSDGAKCDISRLQVMF-GSNVTIAVQDPS 151
Query: 154 YP-----------GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVR 202
YP + + I + C N F + R
Sbjct: 152 YPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVG-----------RTD 200
Query: 203 GVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEAR 262
+ +P+NP GA R L +L++FA + +V D Y+ SI EI A
Sbjct: 201 IIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDD-NPRSIFEIPGAE 259
Query: 263 QYKDSERVHIVYSLSKDLGLPGFRVG-------TIYSYNDKVVTTARRMSS--FTLISSQ 313
E S S G G R+G +YS V R+ F S+
Sbjct: 260 -----EVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNI 314
Query: 314 TQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPL 373
+Q + L+ + + ++ +II+ S G + G + W++
Sbjct: 315 SQAGALACLTPE--GLEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGKNAPYVWVHF--- 369
Query: 374 LEEQTREGELALWDSMLHEVKLNISPGSS-CHCSEPGWFRVCFANMSEQTLEVALKRIHN 432
+ ++ +L + + +PGS E G+ RV E LE A +R
Sbjct: 370 ----PNQSSWDVFAEILEKTHVVTTPGSGFGPGGE-GFVRVSAFGHRENILE-ACRRFKQ 423
Query: 433 FMQK 436
+
Sbjct: 424 LYKH 427
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 2e-33
Identities = 62/355 (17%), Positives = 140/355 (39%), Gaps = 50/355 (14%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGA--TAANELLTFILADPGDALLVPTPY 153
G R+A+A +++ G + + I+VT G + N +L I +PGD +++P P+
Sbjct: 68 GEPRLREAIAQKLQRDNG--LCYGADNILVTNGGKQSIFNLMLAMI--EPGDEVIIPAPF 123
Query: 154 ---YPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPS 210
YP ++ V + F+++P+ + A + + ++ PS
Sbjct: 124 WVSYP----EMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLVFNTPS 173
Query: 211 NPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERV 270
NP G + + A + ++SDEIY + ++ +SI ER
Sbjct: 174 NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAY----ERS 229
Query: 271 HIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQT--------QYLLASML 322
+ +K + G+RVG + + A + I + QY +
Sbjct: 230 VVCSGFAKTYAMTGWRVG--FLAGPVPLVKA--ATK---IQGHSTSNVCTFAQYGAIAAY 282
Query: 323 SNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSPLLEEQTREG 381
N +++ ++ +R + +++ L + G+EC K + + + +++
Sbjct: 283 EN---SQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSL--- 336
Query: 382 ELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436
+ +L + ++ PG++ R+ +A T++ ++R+ F+
Sbjct: 337 DFCSE--LLDQHQVATVPGAA--FGADDCIRLSYAT-DLDTIKRGMERLEKFLHG 386
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 3e-33
Identities = 45/364 (12%), Positives = 103/364 (28%), Gaps = 67/364 (18%)
Query: 101 RQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA--------DPGDALLVPTP 152
+ + E + G A IV G T L L+ P ++ P
Sbjct: 106 EKTIKELHEVV--GNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAP 163
Query: 153 YYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP 212
+YP F R+ + ++T+P+NP
Sbjct: 164 FYPVF-RE--------QTKYFDKKGYVWAGNAANYVNVSNP------EQYIEMVTSPNNP 208
Query: 213 LGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHI 272
G + ++ K + D +Y + I ++ +
Sbjct: 209 EGL-----LRHAVI-----KGCKSIYDMVYYWP-----HYTPIKYK--------ADEDIL 245
Query: 273 VYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLI--SSQTQY--------LLASML 322
++++SK G G R G ++ V + +TQ ++A +
Sbjct: 246 LFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVK 305
Query: 323 SNKKFTENYIKTNRERLQKRYQMIIEGL-RSAGIECLKGNAGLFCWMNLSPL------LE 375
+ K + ++L++R+ I L +S + +C
Sbjct: 306 TQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAW 365
Query: 376 EQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435
+ E ++N G + R+ ++ + + + + ++
Sbjct: 366 VKCEWEEDKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIK-TQDDFDQLMYYLKDMVK 423
Query: 436 KRER 439
+ +
Sbjct: 424 AKRK 427
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 87/350 (24%), Positives = 158/350 (45%), Gaps = 47/350 (13%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA--NELLTFILADPGDALLVPTPY 153
G+ R+ +A + + +++VVT GA A N + + DPGD ++V +P
Sbjct: 79 GIYELREGIAKRIG--ERYKKDISPDQVVVTNGAKQALFNAFMALL--DPGDEVIVFSPV 134
Query: 154 ---YPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPS 210
Y G + + S NFQ + + +E + + VLI +P+
Sbjct: 135 WVSYI----PQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAVLINSPN 184
Query: 211 NPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERV 270
NP G +R LE L+ A ++N +++SDE+Y + + EF SI ++ E +R+
Sbjct: 185 NPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVY-TDEFTSILDVSEGF-----DRI 238
Query: 271 HIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL--ISSQTQYLLASMLSNKKFT 328
+ SK + G+RVG + S ++KV T ++ S T I++ QY L
Sbjct: 239 VYINGFSKSHSMTGWRVGYLIS-SEKVATAVSKIQSHTTSCINTVAQYAALKALEVD--- 294
Query: 329 ENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLF-CWMNLSPLLEEQTREGELALWD 387
+ ++R ++E L+ G++ ++ G F + + ++ +
Sbjct: 295 ---NSYMVQTFKERKNFVVERLKKMGVKFVEPE-GAFYLFFKVR--------GDDVKFCE 342
Query: 388 SMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437
+L E K+ + PGS+ +PG+ R+ FA S + L AL RI +F+ R
Sbjct: 343 RLLEEKKVALVPGSA--FLKPGFVRLSFAT-SIERLTEALDRIEDFLNSR 389
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-32
Identities = 68/378 (17%), Positives = 126/378 (33%), Gaps = 59/378 (15%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA-------------- 141
G +F A+ F + I +T G+ A L +
Sbjct: 84 GDSAFIDALVGFFNRHYD--WNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESK 141
Query: 142 -DPGDALLVPTPYYPGFDRDLRWRTGI-----KIVPIHCDSSNN---FQITPQALEAAYK 192
LL TP Y G+ I + D +++ +ALE
Sbjct: 142 SVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPA 201
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252
E + + + + P+NP G + + L + A R +I L+ D Y G F + +
Sbjct: 202 LKEGR---IGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAY-GMPFPNIIY 257
Query: 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLI-- 310
+ + +SLSK +GLPG R G I + + KV+ M++ +
Sbjct: 258 SDAHLNWD-------NNTILCFSLSK-IGLPGMRTGIIVA-DAKVIEAVSAMNAVVNLAP 308
Query: 311 SSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLR----SAGIECLKGNAGLFC 366
+ + +++N + + + QK+ + ++ L+ + K +F
Sbjct: 309 TRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFL 368
Query: 367 WMNLSPLLEEQTREGELALWDSMLHEVKLNISPGS--------SCHCSEPGWFRVCFANM 418
W+ + +L L I P S + R+ A
Sbjct: 369 WLWFK---DLPISTLDLYER---LKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIA-A 421
Query: 419 SEQTLEVALKRIHNFMQK 436
EQTL +K I +++
Sbjct: 422 DEQTLIDGIKVIGEVVRE 439
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-32
Identities = 74/345 (21%), Positives = 149/345 (43%), Gaps = 33/345 (9%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
G+ R+ +A+F+++ + IV+T G T A +LL +L DPGD ++ P Y
Sbjct: 76 GIPELREELAAFLKKYDHLEVSPE--NIVITIGGTGALDLLGRVLIDPGDVVITENPSYI 133
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV-LITNPSNPLG 214
G KI + D N + LE KE ++K +V+ + I NP+G
Sbjct: 134 NTLLAFEQL-GAKIEGVPVD---NDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMG 189
Query: 215 ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVY 274
T+ + LL+ A++ ++ ++ D Y+ + + V + + + RV +
Sbjct: 190 VTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALD------NEGRV--IV 241
Query: 275 --SLSKDLGLPGFRVGTIY---SYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTE 329
+LSK LG GFR+G I KV+ + + + +QY+ L F +
Sbjct: 242 AGTLSKVLG-TGFRIGWIIAEGEILKKVLMQKQPIDFCA--PAISQYIALEYLKRGYFEK 298
Query: 330 NYIKTNRERLQKRYQMIIEGLRS--AGIECLKGNAGLFCWMNLSPLLEEQTREGELALWD 387
+++ +++ ++++ L + E K AG+F L + + +
Sbjct: 299 YHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGADGI------SFAN 352
Query: 388 SMLHEVKLNISPGSSCHCSEPG--WFRVCFANMSEQTLEVALKRI 430
++ + + PG + E G R+ F+ S++ + + +K++
Sbjct: 353 ELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKL 397
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 1e-31
Identities = 69/366 (18%), Positives = 115/366 (31%), Gaps = 46/366 (12%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGD---ALLVPTP 152
G + A+A + + G + I +T G+ +A L + A V P
Sbjct: 76 GKTALLNALAVLLRETLG--WDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFP 133
Query: 153 YYPGFDRDLRWRTGIKI-----VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLIT 207
P + + I F+ E + ++
Sbjct: 134 LAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLHIGE------ETGMICVS 187
Query: 208 NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDS 267
P+NP G I L +L A + NI LV D Y G F F + +
Sbjct: 188 RPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAY-GVPFPGIIFSEARPL-------WN 239
Query: 268 ERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLI--SSQTQYLLASMLSNK 325
+ + SLSK LGLPG R G I + NDK +T M+ + ++ M+
Sbjct: 240 PNIILCMSLSK-LGLPGSRCGIIIA-NDKTITAIANMNGIISLAPGGMGPAMMCEMIKRN 297
Query: 326 KFTENYIKTNRERLQKRYQMIIEGLRSA----GIECLKGNAGLFCWMNLSPLLEEQTREG 381
+ +R Q I +R K +F W+ L T E
Sbjct: 298 DLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLP--ITTE- 354
Query: 382 ELALWDSMLHEVKLNISPGSSCHCSEPGW-------FRVCFANMSEQTLEVALKRIHNFM 434
L L + + PG R+ + ++ +E +K + +
Sbjct: 355 LLYQR---LKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDK-IEAGVKILAEEI 410
Query: 435 QKRERR 440
++ R
Sbjct: 411 ERAWRE 416
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 3e-31
Identities = 68/404 (16%), Positives = 145/404 (35%), Gaps = 81/404 (20%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFD-LNRIVVTAGATAA-----NELLTFILADPGDALLV 149
L + + + F++++ A + T G TAA + L L GD + +
Sbjct: 139 CLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAI 198
Query: 150 PTPYYPGFDRDLRWRTG-IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITN 208
P + + R + + V +H N+++I P +E KD ++ +++ N
Sbjct: 199 NEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKL------KDPSIKALIVVN 252
Query: 209 PSNPLGATIQRSVLEELLDFATR-KNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDS 267
P+NP + L + + + ++SDE+Y F SI ++
Sbjct: 253 PTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVP---NFKSIYSVV-------P 302
Query: 268 ERVHIVYSLSKDLGLPGFRVGTI-------------YSYNDKVVTTARRMSSFTLISSQT 314
+VYS SK G G+R+G I + ++ +R SS L +
Sbjct: 303 YNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKM 362
Query: 315 ------------------------QYLLASMLS--------NKKFTENYIKTNRERLQKR 342
Q ++ ++ S N + YI R+ + +R
Sbjct: 363 KFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSER 422
Query: 343 YQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLE----EQTREGELALWDSM------LHE 392
Y + + +++ E N + +++ L E ++ R+ ++ + +
Sbjct: 423 YDQLHDAMQAPKDET-DTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEK 481
Query: 393 VKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436
+ + G G RV AN+ + + K++ +++
Sbjct: 482 NGVVLVDGVGFGAKP-GELRVSQANLPTEDYALIGKQVLELLKE 524
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 4e-31
Identities = 73/414 (17%), Positives = 140/414 (33%), Gaps = 91/414 (21%)
Query: 96 GLKSFRQAMAS-FMEQIRGGRAKFD-LNRIVVTAGATAA-----NELLTFILADPGDALL 148
+ + + + ++ + G A + G TAA L L GD +
Sbjct: 139 RMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVA 198
Query: 149 VPTPYYPGFDRDLRWRTG-IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLIT 207
+ P + + ++ V I+ D S N+Q L+ KD ++
Sbjct: 199 IGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKL------KDPAIKIFFCV 252
Query: 208 NPSNPLGATIQRSVLEELLDFATRKNIHL--VSDEIYSGSAFSSSEFVSIAEILEARQYK 265
NPSNP + + LE + + L ++D++Y A +F S+ I
Sbjct: 253 NPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFAD---DFQSLFAICP----- 304
Query: 266 DSERVHIVYSLSKDLGLPGFRVGTI----------------------------------- 290
E +VYS SK G G+R+G +
Sbjct: 305 --ENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVR 362
Query: 291 -YSYNDKVVTTARRMS----SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQM 345
+ D++V +R ++ + Q Q L S+ + + Y T ++ +++R
Sbjct: 363 SLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETT 422
Query: 346 IIEGLRSAGIECLK-GNAGLF-CWMNLSPLLE----EQTREGELALWDSM------LHEV 393
+ L G+ L+ NA + ++L + E E + + E
Sbjct: 423 LYREL---GMPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADET 479
Query: 394 KLNISPGS---SCHCSEPGWFRVCFANMSEQTLEV---ALKRIHNFMQKRERRR 441
+ + PG S S R AN++E AL+++ + + +
Sbjct: 480 GIVLLPGRGFGSNRPS----GRASLANLNEYEYAAIGRALRKMADELYAEYSGQ 529
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 3e-30
Identities = 65/368 (17%), Positives = 127/368 (34%), Gaps = 55/368 (14%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
G +Q + +E+ G D + ++ T G+ A +L+ + D ++ P Y
Sbjct: 86 GDPVLKQQILKLLER-MYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYL 144
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI-TNPS--NP 212
G R V + + + + LE E + + I + NP
Sbjct: 145 GAINAFRQY-LANFVVVPLE---DDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNP 200
Query: 213 LGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHI 272
G T + L++ A + ++ +V D+ Y + I + ERV
Sbjct: 201 AGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPI------FKIGGPERV-- 252
Query: 273 VY--SLSKDLGLPGFRVGTIY---SYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKF 327
V + SK L PG R+G + + K+V + + + T L A L
Sbjct: 253 VLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQSADLCS--PAITHRLAARYLERYDL 309
Query: 328 TENYIKTNRERLQKRYQMIIEGLR-----SAGIECLKGNAGLFCWMNL------SPLLEE 376
+K E +++ +++ L G++ +K GLF W+ L + E
Sbjct: 310 -LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEY 368
Query: 377 QTREGELALWDSMLHEVKLNISPGSSCHCSEPG--WFRVCFANMSEQTLEVALKR----I 430
A K+ PG + R+ F ++ + +KR +
Sbjct: 369 -------AK------RKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVV 415
Query: 431 HNFMQKRE 438
+ +++
Sbjct: 416 LEYGKEKH 423
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 1e-29
Identities = 72/352 (20%), Positives = 142/352 (40%), Gaps = 49/352 (13%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
G R+ + ++ + R G ++ + I++T+G+ A +L+ + +PGD ++V P Y
Sbjct: 119 GFTPLRETLMKWLGK-RYGISQDN--DIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYL 175
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV-LITNPSNPLG 214
+ + + + I D + + + LE KE +S+ +V+ V + NP G
Sbjct: 176 AALQAFNFY-EPQYIQIPLD---DEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAG 231
Query: 215 ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVY 274
T+ + LL+ A+ + +V D+ Y +S + I + + RV +Y
Sbjct: 232 VTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALD------NEGRV--IY 283
Query: 275 --SLSKDLGLPGFRVGTIY---SYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTE 329
+ SK L PGFR+G + K+ + T + Q + + E
Sbjct: 284 LGTFSKILA-PGFRIGWMVGDPGIIRKMEIAKQSTDLCT--NVFGQVVAWRYVDGGYL-E 339
Query: 330 NYIKTNRERLQKRYQMIIEGLR---SAGIECLKGNAGLFCWMNL------SPLLEEQTRE 380
+I R+ + R ++E L G++ K G+F W+ L +LE
Sbjct: 340 KHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGIDSKKMLER---- 395
Query: 381 GELALWDSMLHEVKLNISPGSSCHCSEPG--WFRVCFANMSEQTLEVALKRI 430
A+ + + PG + + R+ F + E + +KR+
Sbjct: 396 ---AI------KKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRL 438
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 2e-27
Identities = 57/362 (15%), Positives = 118/362 (32%), Gaps = 64/362 (17%)
Query: 94 YHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELL-----TFILADPGDALL 148
+S R A F ++ + N ++ T G+ E+L + +
Sbjct: 58 SAFEESLRAAQRGFFKRRFK--IELKENELISTLGS---REVLFNFPSFVLFDYQNPTIA 112
Query: 149 VPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITN 208
P P+Y ++ ++ K + + N+F + E V V++ +
Sbjct: 113 YPNPFYQIYEGAAKF-IKAKSLLMPLTKENDFTPSLNEKELQ---------EVDLVILNS 162
Query: 209 PSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSE 268
P+NP G T+ L + A + + L++DE YS + ++ S+ E + +
Sbjct: 163 PNNPTGRTLSLEELISWVKLALKHDFILINDECYSE-IYENTPPPSLLEACMLAGNEAFK 221
Query: 269 RVHIVYSLSKDLGLPGFRVG-------------TIYSYNDKVVTTARRMSSFTLISSQTQ 315
V +++SLSK PG R G +Y +S I Q
Sbjct: 222 NVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRAYLG--------YTSANAI----Q 269
Query: 316 YLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLE 375
+ + + + + R ++ + ++ I + ++ +
Sbjct: 270 KASEAAWLD----DRHAEFFRNIYANNLKLARKIFKNTLIY----PYSFYVYLPVQ---- 317
Query: 376 EQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFM 434
GE ++ + P + G V A LE L+ I +
Sbjct: 318 ----NGE-NFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYR 372
Query: 435 QK 436
+
Sbjct: 373 EN 374
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 67/423 (15%), Positives = 130/423 (30%), Gaps = 59/423 (13%)
Query: 38 ENPYEESTNPSGVIQM--GL-AENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDY 94
YE + M G A+ FDL L G L Y
Sbjct: 15 RQAYEAFKARGLNLNMQRGQPADAD--FDLSNGLLTVLGAEDVRMDGL------DLRN-Y 65
Query: 95 H----GLKSFRQAMASFMEQ-----IRGGRAKFDLNRIVVTAGATAANELLTFILADPGD 145
GL S R A +++ + + +L +V+T T
Sbjct: 66 PGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTP 125
Query: 146 ALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV- 204
++V P Y L+ G +++ + S A+E D V+G+
Sbjct: 126 KMIVTVPGYDRHFLLLQTL-GFELLTVDMQSDG---PDVDAVERLAGT----DPSVKGIL 177
Query: 205 LITNPSNPLGATIQRSVLEELLD-FATRKNIHLVSDEIYSGSAFSSSEFVSIAEILE-AR 262
+ SNP G TI L A + + +D+ Y + + AR
Sbjct: 178 FVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLAR 237
Query: 263 QYKDSERVHIVY--SLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQT--QYLL 318
+R S SK G +G + S ++ + + I Q
Sbjct: 238 DAGYPDRA--FVFASTSKIT-FAGAGLGFVAS-SEDNIRWLSKYLGAQSIGPNKVEQARH 293
Query: 319 ASMLSNKK-FTENYIKTNRERLQKRYQMIIEGLRSAGIECLKG------NAGLFCWMNLS 371
L+ E ++ + + +++ + E LR+ E + G F ++ +
Sbjct: 294 VKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTA 353
Query: 372 PLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGW----FRVCFANMSEQTLEVAL 427
+ R +LA ++++P + + + R+ + + A+
Sbjct: 354 EPVA--DRVVKLAE------AAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAM 405
Query: 428 KRI 430
+ +
Sbjct: 406 QVV 408
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 2e-25
Identities = 68/414 (16%), Positives = 130/414 (31%), Gaps = 70/414 (16%)
Query: 47 PSGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSF-----R 101
V+ + + EEY + + T G + F D L F
Sbjct: 21 SDFVVNLDHGDP----TAYEEYWRKMGDRCT--VTIRGCDLMSYFSDMTNLCWFLEPELE 74
Query: 102 QAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGD----ALLVPTPYYPGF 157
A+ G A + IVV G+T + L+ +++ P+Y +
Sbjct: 75 DAIKDLHG--VVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTY 132
Query: 158 DRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI 217
V S ++ A L+T+P+NP G
Sbjct: 133 ------VEETTYVR-----SGMYKWEGDAWGF-------DKKGPYIELVTSPNNPDGT-- 172
Query: 218 QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLS 277
+ E +++ ++ D Y ++ + + ++++ S
Sbjct: 173 ---IRETVVNRPDDDEAKVIHDFAYYWPHYTPIT-------------RRQDHDIMLFTFS 216
Query: 278 KDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLI--SSQTQYLLASMLS-------NKKFT 328
K G G R+G + +V I S ++Q A +L+ ++ +
Sbjct: 217 KITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESES 276
Query: 329 ENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNL-----SPLLEEQTREGEL 383
EN+ K RE ++ R++ + E ++ + L FC P + E
Sbjct: 277 ENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEET 336
Query: 384 ALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437
L + K+ G C + RV + E V L+R+ N +
Sbjct: 337 DLVSELR-RHKVMSRAGERCGS-DKKHVRVSMLS-REDVFNVFLERLANMKLIK 387
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-25
Identities = 67/365 (18%), Positives = 138/365 (37%), Gaps = 56/365 (15%)
Query: 94 YHGLKSFRQAMASFMEQIRGGRAKFDLNR-IVVTAG-----ATAANELLTFILADPGDAL 147
GL RQA A+++++ R D + I+ G + +L + A+
Sbjct: 65 TAGLPELRQACANWLKR-RYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAI 123
Query: 148 LVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLIT 207
+ P P+Y ++ G +I +C + +F +++ + R + V +
Sbjct: 124 VSPNPFYQIYEGATLL-GGGEIHFANCPA-PSFNPDWRSISEEVWK------RTKLVFVC 175
Query: 208 NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDS 267
+P+NP G+ + +E+ D + + SDE YS F ++ + + A+ +
Sbjct: 176 SPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQA-AAQLGRSR 234
Query: 268 ERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKF 327
+++ + SLSK +PG R G V A + +F L + Y ++M
Sbjct: 235 QKLLMFTSLSKRSNVPGLRSGF-------VAGDAELLKNFLLYRT---YHGSAM-----S 279
Query: 328 T------------ENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLE 375
E ++ NR Q++++ +I L+ + +A + W+ +
Sbjct: 280 IPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQV-FDVKLPDASFYIWLKV----- 333
Query: 376 EQTREGELALWDSMLHEVKLNISPGS----SCHCSEPGWFRVCFA-NMSEQTLEVALKRI 430
+LA ++ + + + PG PG V A T A + I
Sbjct: 334 --PDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDI 391
Query: 431 HNFMQ 435
+ +
Sbjct: 392 VSLYR 396
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 67/352 (19%), Positives = 122/352 (34%), Gaps = 57/352 (16%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
G R +A ++ +++T G+ A +L+ + D G +L+ P Y
Sbjct: 75 GYAPLRAFVAEWIGV--------RPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYM 126
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV-LITNPSNPLG 214
G + R G + + + ALE K R R + LI + NP G
Sbjct: 127 GAIQAFR-LQGPRFLTVPAG---EEGPDLDALEEVLKRE-----RPRFLYLIPSFQNPTG 177
Query: 215 ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVY 274
+ LL + + +V D+ Y F + S+ E+ +++ ++Y
Sbjct: 178 GLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELA-----REAGYPGVIY 232
Query: 275 --SLSKDLGLPGFRVGTIY---SYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTE 329
S SK L PG RV K+V + T Q L+ +L
Sbjct: 233 LGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQGADLHT--PMLNQMLVHELLKEG--FS 287
Query: 330 NYIKTNRERLQKRYQMIIEGLR---SAGIECLKGNAGLFCWMNL------SPLLEEQTRE 380
++ R +++ Q ++ L + + G+F WM L L
Sbjct: 288 ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKGLSAEGLFRR---- 343
Query: 381 GELALWDSMLHEVKLNISPGSSCHCSEPG--WFRVCFANMSEQTLEVALKRI 430
AL E + PG + G R+ +A + + + ++R+
Sbjct: 344 ---AL------EENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRL 386
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 57/362 (15%), Positives = 132/362 (36%), Gaps = 50/362 (13%)
Query: 96 GLKSFRQAMASFMEQIRG-----GRAKFDLNRIVVTAGATAANELLTFILADPGDALLVP 150
G+ + ++ + VT+G+ + ++ +PGD +L+
Sbjct: 79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLD 138
Query: 151 TPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRG-----VL 205
P Y G + L G I+ + D I P +L + +D + L
Sbjct: 139 EPAYSGTLQSLHPL-GCNIINVASDE---SGIVPDSLRDILSRWKPEDAKNPQKNTPKFL 194
Query: 206 ITNPS--NPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQ 263
T P+ NP G ++ +E+ + A + + ++ D+ Y F+ + +
Sbjct: 195 YTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMD---- 250
Query: 264 YKDSERVHIVY--SLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQ-----TQY 316
RV + S SK + G R+G + ++ R+ +S+ Q
Sbjct: 251 --VDGRV--IRADSFSKIIS-SGLRIGFLTG-PKPLI---ERVILHIQVSTLHPSTFNQL 301
Query: 317 LLASMLSNKKFT--ENYIKTNRERLQKRYQMIIEGLR---SAGIECLKGNAGLFCWMNLS 371
+++ +L ++ + + I+ + E AG+F W+ +
Sbjct: 302 MISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVK 361
Query: 372 PLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPG---WFRVCFANMSEQTLEVALK 428
+ + + E A+ ++ + + PG++ + + R F++ S + ++VA +
Sbjct: 362 GINDVKELIEEKAV------KMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQ 415
Query: 429 RI 430
+
Sbjct: 416 VL 417
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 4e-21
Identities = 56/390 (14%), Positives = 117/390 (30%), Gaps = 45/390 (11%)
Query: 62 FDLLEEYLEQQPEASTWGKGAPGFRENALFQDY---HGLKSFRQAMASFMEQ------IR 112
D +E L + + Y G+ RQ A +
Sbjct: 48 LDFADELLALPGKGDFKAADGT-----DVRN-YGGLDGIVDIRQIWADLLGVPVEQVLAG 101
Query: 113 GGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPI 172
+ + ++ + N+ + + + P P Y G +++ +
Sbjct: 102 DASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERF-GFEMISV 160
Query: 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGV-LITNPSNPLGATIQRSVLEELLDFAT- 230
+ A+E K +V+G+ ++ SNP G T+ V + L T
Sbjct: 161 PMNED---GPDMDAVEELVKNP-----QVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETA 212
Query: 231 RKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTI 290
+ +V D Y+ + I + + R S SK L G V
Sbjct: 213 APDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKIT-LAGAGVSFF 271
Query: 291 YSYNDKVVTTARRMSSFTLISSQ-TQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEG 349
+ + + ++ Q A + + ++ + L ++ ++E
Sbjct: 272 LTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEI 331
Query: 350 LR-----SAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCH 404
L + G F +++ P +R ELA E + ++ S +
Sbjct: 332 LDSRLAEYGVAQWTVPAGGYFISLDVVPGTA--SRVAELAK------EAGIALTGAGSSY 383
Query: 405 CSEPG----WFRVCFANMSEQTLEVALKRI 430
R+ + + LEVA+ +
Sbjct: 384 PLRQDPENKNLRLAPSLPPVEELEVAMDGV 413
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 4e-19
Identities = 56/363 (15%), Positives = 112/363 (30%), Gaps = 56/363 (15%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA--NELLTFIL------------A 141
G+ R+ A + + +V G++ +L+++ A
Sbjct: 77 GIADIRELWAEALG--------LPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSA 128
Query: 142 DPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201
+ L P P Y G +++ + + + K+ + K
Sbjct: 129 EEKVKWLCPVPGYDRHFTITEHF-GFEMINVPMT---DEGPDMGVVRELVKDPQVK---- 180
Query: 202 RGVLITNP--SNPLGATIQRSVLEELLDFATR-KNIHLVSDEIYSGSAFSSSEFVSIAEI 258
+ T P NP G T EL + +T + +V D Y+ S + I
Sbjct: 181 --GMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVI 238
Query: 259 LEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQT--QY 316
A+ + R + S SK G V S + + + ++ I Q
Sbjct: 239 EFAQAAGNPNRFWFMSSTSKIT-HAGSGVSFFAS-SKENIEWYASHANVRGIGPNKLNQL 296
Query: 317 LLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLR-----SAGIECLKGNAGLFCWMNLS 371
A + + ++ + L +++ ++E L + G F +++
Sbjct: 297 AHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVV 356
Query: 372 PLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPG----WFRVCFANMSEQTLEVAL 427
P +R ELA E + ++ S R+ + LEVA+
Sbjct: 357 PGTA--SRVVELAK------EAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAM 408
Query: 428 KRI 430
Sbjct: 409 DGF 411
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 6e-19
Identities = 61/348 (17%), Positives = 132/348 (37%), Gaps = 61/348 (17%)
Query: 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPT 151
DY L QA+A + + I+ G E + + ++ T
Sbjct: 60 DYFHL---HQALARHH--------QVPASWILAGNGE---TESIFTVASGLKPRRAMIVT 105
Query: 152 PYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSN 211
P + + R L ++G +I ++ +Q+T LEA + + + P+N
Sbjct: 106 PGFAEYGRALA-QSGCEIRRWSLREADGWQLTDAILEAL-------TPDLDCLFLCTPNN 157
Query: 212 PLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAE--ILEARQYKDSER 269
P G +R +L+ + D NI+L+ DE AF +F+ I +
Sbjct: 158 PTGLLPERPLLQAIADRCKSLNINLILDE-----AF--IDFIPHETGFIPALKDN---PH 207
Query: 270 VHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS-SFTLISSQTQYLLASMLSNKKF- 327
+ ++ SL+K +PG R+G + + +D + RR ++ +++ L + +
Sbjct: 208 IWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWS-VNALAALAGEVALQDSAWQ 266
Query: 328 --TENYIKTNRERLQKRYQMIIEGLRS-AGIECLKGNAG-LFCWMNLSPLLEEQTREGEL 383
T ++++ R + L + G A L + ++
Sbjct: 267 QATWHWLREEGARFY-------QALCQLPLLTVYPGRANYLLL----------RCEREDI 309
Query: 384 ALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSE-QTLEVALKRI 430
L +L + ++ I ++ + ++RV + ++ + L AL+ +
Sbjct: 310 DLQRRLLTQ-RILIRSCANYPGLDSRYYRVAIRSAAQNERLLAALRNV 356
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 1e-18
Identities = 63/353 (17%), Positives = 141/353 (39%), Gaps = 52/353 (14%)
Query: 98 KSFRQAMASFMEQIRGGRAKFDLNR--IVVTAGATAANELLTFILADPGDALLVPTPYYP 155
S+ +++ +++ + R + + ++ + G A LL L D +++ P Y
Sbjct: 70 DSYNESIVNWLYR----RHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYS 125
Query: 156 GFDRDLRWRTGIKIV--PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPL 213
F+ ++ +++ P+ + N+ + + +E K+ V+ ++ NP NP+
Sbjct: 126 PFNSVVK-NNNRELIISPLQKLENGNYIMDYEDIENKIKD-------VKLFILCNPHNPV 177
Query: 214 GATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIV 273
G + L++L D + N+ ++SDEI+S + + +A I + + +
Sbjct: 178 GRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISK----EFEKNTITC 233
Query: 274 YSLSKDLGLPGFRVGTIYSYN----DKVVTTARRM-----SSFTLISSQTQYL-----LA 319
+ +K + G + + + + R+ + F+L++++ Y L
Sbjct: 234 MAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLE 293
Query: 320 SMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTR 379
S L Y+++N + K + L+ E W++ S L
Sbjct: 294 SFLE-------YLESNIDFAIKYINENMPKLKVRKPE-----GTYLLWVDFSALGLSDE- 340
Query: 380 EGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHN 432
L ++ + K+ ++ G+S G+ R+ A LE AL RI N
Sbjct: 341 ----ELESILVQKGKVALNQGNSFGIGGSGYQRINLA-CPRSMLEEALIRIKN 388
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 1e-18
Identities = 58/350 (16%), Positives = 117/350 (33%), Gaps = 53/350 (15%)
Query: 99 SFRQAMASFMEQIRGGRAKFDLNR--IVVTAGATAANELLTFILADPGDALLVPTPYYPG 156
F A+A + + ++ +V L ++ G+ +++ TP Y
Sbjct: 68 EFLAAIAHWFST----QHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDA 123
Query: 157 FDRDLRWRTGIKIVPIHCDSSNN-FQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA 215
F + + ++P+ + + + LEA + E K M L+ +P NP G
Sbjct: 124 FYKAIE-GNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIM-----LLCSPQNPTGK 177
Query: 216 TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275
LE + D R + ++SDEI+ + + + + ++ S
Sbjct: 178 VWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVAR-------GDWALLTS 230
Query: 276 LSKDLGLPGFRVGTIYSYN----DKVVTTARRM------SSFTLISSQTQYL-----LAS 320
SK +P N D ++ + S L + Y L +
Sbjct: 231 GSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDA 290
Query: 321 MLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTRE 380
+ Y+K N + + L + + W++L PL +
Sbjct: 291 LRI-------YLKDNLTYIADKMNAAFPELNWQIPQ-----STYLAWLDLRPLNIDDN-- 336
Query: 381 GELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRI 430
AL +++ + K+ I PG + G+ R+ LE + +
Sbjct: 337 ---ALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG-CPRSKLEKGVAGL 382
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 2e-18
Identities = 70/356 (19%), Positives = 127/356 (35%), Gaps = 49/356 (13%)
Query: 98 KSFRQAMASFMEQIRGGRAKFDLNR--IVVTAGATAANELLTFILADPGDALLVPTPYYP 155
QA+ + + ++ ++ IV G A + G+A+L+ +P YP
Sbjct: 69 DELLQAVLDWEKS----EHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYP 124
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNN-FQITPQALEAAYKEAESKDMRVRGVLITNPSNPLG 214
F R +R K+V N FQI + LE E + K L+ NP NP G
Sbjct: 125 PFARSVR-LNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLY-----LLCNPHNPGG 178
Query: 215 ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVY 274
+R VLE++ + ++ LVSDEI+ E VS + + ++
Sbjct: 179 RVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSP----DFKDFALVLS 234
Query: 275 SLSKDLGLPGFRVGTIYSYN----DKVVTTARRM-----SSFTLISSQTQYL-----LAS 320
S +K + G + N + SS I+++T Y L +
Sbjct: 235 SATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVA 294
Query: 321 MLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTRE 380
+ + ++ N + + + L+ + W++ S
Sbjct: 295 LKA-------VLEENIQFAVEYFAQEAPRLKVMKPQ-----GTYLIWLDFSDYGLTDD-- 340
Query: 381 GELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436
AL+ + + K+ ++ GS R+ A + +E KRI + K
Sbjct: 341 ---ALFTLLHDQAKVILNRGSDYGSEGELHARLNIA-APKSLVEEICKRIVCCLPK 392
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 5e-18
Identities = 61/360 (16%), Positives = 138/360 (38%), Gaps = 49/360 (13%)
Query: 98 KSFRQAMASFMEQIRGGRAKFDLNR--IVVTAGATAANELLTFILADPGDALLVPTPYYP 155
+ +++ + +M+ R ++D+ I+ TAG A PGD +++ TP Y
Sbjct: 69 EEYKKTVKKWMKD----RHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYY 124
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNN-FQITPQALEAAYKEAESKDMRVRGVLITNPSNPLG 214
F ++ KI+ + + I Q LE K+ +K + L +P NP+G
Sbjct: 125 PFFMAIK-NQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKAL-----LFCSPHNPVG 178
Query: 215 ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVY 274
++ L+++ D + ++ L SDEI+ E I E + +++
Sbjct: 179 RVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDE----QLADKTITFT 234
Query: 275 SLSKDLGLPGFRVGTIYSYN----DKVVTTARRM-----SSFTLISSQTQYL-----LAS 320
+ SK + G + I N ++ + ++ + + Y L
Sbjct: 235 APSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDG 294
Query: 321 MLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTRE 380
+ I N+ ++ +++ +++ IE W++ L +
Sbjct: 295 CIK-------VIDKNQRIVKDFFEVNHPEIKAPLIE-----GTYLQWIDFRALKMDHK-- 340
Query: 381 GELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRERR 440
A+ + M+H+ ++ G G+ R+ A ++ +L+R++ ++ + R
Sbjct: 341 ---AMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA-APSSVIQESLERLNKALKDLKNR 396
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 1e-17
Identities = 46/248 (18%), Positives = 102/248 (41%), Gaps = 34/248 (13%)
Query: 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGF 157
+ +++ +++ K IV+ GA +E++ + + +L+ P Y +
Sbjct: 64 RRLNKSIENYL--------KLKDIGIVLGNGA---SEII-ELSISLFEKILIIVPSYAEY 111
Query: 158 DRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI 217
+ + + + G+ +V + D N I + + + + D V+I NP+NP G I
Sbjct: 112 EINAK-KHGVSVVFSYLD--ENMCIDYEDIISKIDD---VDS----VIIGNPNNPNGGLI 161
Query: 218 QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLS 277
+ +L A K ++ DE AF EF + K+ + I+ +++
Sbjct: 162 NKEKFIHVLKLAEEKKKTIIIDE-----AF--IEFTGDPSSSFVGEIKNYSCLFIIRAMT 214
Query: 278 KDLGLPGFRVGTIYSYNDKVVTTARRM-SSFTLISSQTQYLLASMLSNKKF---TENYIK 333
K +PG R G + N ++ + + + I+ + + L + + + +IK
Sbjct: 215 KFFAMPGIRFGYGITNNKEIAAKIKAKQNPWN-INCFAEMAAINCLKDTNYIEESLLWIK 273
Query: 334 TNRERLQK 341
R+R +
Sbjct: 274 KERKRFIE 281
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 82.9 bits (206), Expect = 2e-17
Identities = 49/349 (14%), Positives = 108/349 (30%), Gaps = 49/349 (14%)
Query: 99 SFRQAMASFMEQIRGGRAKFDLNR--IVVTAGATAANELLTFILADPGDALLVPTPYYPG 156
+ +A+A + E + V +G A + PGD +LV P Y
Sbjct: 66 EYYKAVADWEEI----EHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNM 121
Query: 157 FDRDLRWRTGIKIVPIHCDSSNN-FQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA 215
F + G +++ N+ + + LE + M + NP NP+G
Sbjct: 122 FYSVIE-GNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMM-----VFCNPHNPIGY 175
Query: 216 TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275
++ + + + + L+SDEI+ + + + V + S
Sbjct: 176 AWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDW----DAKNWVVSLIS 231
Query: 276 LSKDLGLPGFRVGTIYSYN----DKVVTTARRM-----SSFTLISSQTQYL-----LASM 321
SK L N + + + + ++ Y L +
Sbjct: 232 PSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLREL 291
Query: 322 LSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREG 381
++ N ++ + ++ A W+++S L
Sbjct: 292 KQ-------VLRDNFAYAREFLAKEVPEVKVLDSN-----ASYLAWVDISALGMNAE--- 336
Query: 382 ELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRI 430
+ + L IS G+ + + R+ A ++ + ++R+
Sbjct: 337 --DFCKYLREKTGLIISAGNGYRGNGHEFVRINLA-CPKELVIDGMQRL 382
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 67/354 (18%), Positives = 119/354 (33%), Gaps = 66/354 (18%)
Query: 98 KSFRQAMASFMEQIRGGRAKFDLNR--IVVTAGATAANELLTFILADPGDALLVPTPYYP 155
QA A F R + I + ++VPTP YP
Sbjct: 61 SLLSQATAEFYAD----RYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYP 116
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA 215
F L T + + D I +E ++ R +L+ NP NPLG
Sbjct: 117 PFFHLLS-ATQREGIF--ID--ATGGINLHDVEKGFQA------GARSILLCNPYNPLGM 165
Query: 216 TIQRSVLEELLDFATRKNIHLVSDEI-----YSGSAFSSSEFVSIAEILEARQYKDSERV 270
L EL D A R + ++ DEI + G + A + + +
Sbjct: 166 VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDG------QHTVAAGVSD----TAASVC 215
Query: 271 HIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM--------SSFTLISSQTQYL----- 317
+ + SK + G + I N +++ S+ LI+++ Y
Sbjct: 216 ITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDF 275
Query: 318 LASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPL-LEE 376
L ++ Y+K N + L I G + ++ A W++ +E
Sbjct: 276 LNQEVA-------YLKNNHDFLLHEIPKRIPGAKITPMQ-----ATYLMWIDFRDTTIEG 323
Query: 377 QTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRI 430
+ + + K+ ++ G+ G+ R+ FA S + LE A+ R+
Sbjct: 324 S-------PSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA-TSREVLEEAIDRM 369
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 5e-17
Identities = 64/356 (17%), Positives = 128/356 (35%), Gaps = 50/356 (14%)
Query: 98 KSFRQAMASFMEQIRGGRAKFDLNR--IVVTAGATAANELLTFILADPGDALLVPTPYYP 155
QA+ + + + + + I+ G A + ++ GDA+L+ +P Y
Sbjct: 99 DDLYQAVIDWERK----EHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYY 154
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNN-FQITPQALEAAYKEAESKDMRVRGVLITNPSNPLG 214
F R +R ++V N F+I + LE + K L+ +P NP G
Sbjct: 155 PFARTIR-LNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIY-----LLCSPHNPGG 208
Query: 215 ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVY 274
L ++ + + + LVSDEI+ A + S+ + + I+
Sbjct: 209 RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDA----SYKDFTIILS 264
Query: 275 SLSKDLGLPGFRVGTIYSYN----DKVVTTARRM-----SSFTLISSQTQYL-----LAS 320
S +K + G + N K + +I++Q + L
Sbjct: 265 SATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEE 324
Query: 321 MLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTRE 380
+ + I+ N + + K +E I+ ++ W++ S Q
Sbjct: 325 LKT-------VIEGNIKLVIKE----LEAK--TKIKVMEPEGTYLVWLDFSAYAIAQP-- 369
Query: 381 GELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436
L + + +E K+ ++ G+ + R+ A + T++ AL RI + K
Sbjct: 370 ---QLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA-TPKNTVQEALSRIISVFGK 421
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 3e-14
Identities = 61/327 (18%), Positives = 106/327 (32%), Gaps = 61/327 (18%)
Query: 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPT 151
D L RQ +A D N I+VT G T I A G L+
Sbjct: 51 DAGTL---RQMLAKRN--------SVDNNAILVTNGPT---AAFYQIAQAFRGSRSLIAI 96
Query: 152 PYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSN 211
P + ++ R ++ + + + NP+N
Sbjct: 97 PSFAEYEDACR-MYEHEVCFYPSNEDIGEADFS---------------NMDFCWLCNPNN 140
Query: 212 PLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVH 271
P G +QR+ + LL+ + V D+ Y +F++ E + A+I K + +
Sbjct: 141 PDGRLLQRTEILRLLN--DHPDTTFVLDQSY--VSFTTEEVIRPADI------KGRKNLV 190
Query: 272 IVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKF---T 328
+VYS S G+PG R+G I + D + A + + +++ +L +
Sbjct: 191 MVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFSTPWA-VNALAIEAAKFILIHPAQFTLP 249
Query: 329 ENYIKTNRERLQKRYQMIIEGLRS-AGIECLKGNAGLFCWMNLSPLLEEQTREGELALWD 387
+ N I L G+E L + L
Sbjct: 250 IRKWQRNTVDF-------ITALNRLDGVEVHPSGT------TF--FLLRLKKGTAAELKK 294
Query: 388 SMLHEVKLNISPGSSCHCSEPGWFRVC 414
ML E + I S+ + + R+
Sbjct: 295 YMLEEYNMLIRDASNFRGLDESYVRIT 321
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 5e-13
Identities = 55/270 (20%), Positives = 95/270 (35%), Gaps = 47/270 (17%)
Query: 116 AKFDL--NRIVVTAGATAANELLTFI---LADPGDALLVPTP---YYPGFDRDLRWRTGI 167
A + I++TAG+ +E + A L++P F + G+
Sbjct: 62 AHHQVEAPSILLTAGS---SEGIRAAIEAYASLEAQLVIPELTYGDGEHFAK----IAGM 114
Query: 168 KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLD 227
K+ + N+ + L+AA V + NP+NP G V+E +
Sbjct: 115 KVTKVKMLD--NWAFDIEGLKAAVAA----YSGPSIVYLVNPNNPTGTITPADVIEPWIA 168
Query: 228 FATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS--LSKDLGLPGF 285
+ N + DE Y +EFV+ +I+ SK + G
Sbjct: 169 -SKPANTMFIVDEAY-------AEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGM 220
Query: 286 RVGTIYSYNDKVVTTA--RRMSSFTLISSQTQYL-LASMLSNKKFTENYIKTNRERLQKR 342
RVG Y+ V R ++ I+ LAS +++ F K+N Q
Sbjct: 221 RVG--YAVAHPTVIALMGRYVAGEK-INFSGVDAALAS-MNDSAFITYSKKSNDVSRQI- 275
Query: 343 YQMIIEGLRSAGIECL--KGNAGLFCWMNL 370
+++ L + L +GN F + L
Sbjct: 276 ---LLKALEDLKLPYLPSEGN---FVFHQL 299
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 6e-13
Identities = 51/267 (19%), Positives = 98/267 (36%), Gaps = 44/267 (16%)
Query: 116 AKFDL--NRIVVTAGATAANELLTFI---LADPGDALLVPTP---YYPGFDRDLRWRTGI 167
+ L ++ TAG +EL+ + L D ++ TP Y G
Sbjct: 78 DFYQLEEEELIFTAGV---DELIELLTRVLLDTTTNTVMATPTFVQYRQNAL----IEGA 130
Query: 168 KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLD 227
++ I + + + + A E + V I NP+NP G I+ + ++ LD
Sbjct: 131 EVREI--PLLQDGEHDLEGMLNAIDE------KTTIVWICNPNNPTGNYIELADIQAFLD 182
Query: 228 FATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV 287
++ +V DE Y E+V+ + + + + I + SK GL RV
Sbjct: 183 -RVPSDVLVVLDEAY-------IEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARV 234
Query: 288 GTIYSY-NDKVVTTARRMSS-FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQM 345
G Y + +++ + F +S Q L + ++ F +N +++
Sbjct: 235 G--YGIADKEIIRQLNIVRPPFN-TTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEA- 290
Query: 346 IIEGLRSAGIECLK--GNAGLFCWMNL 370
R ++ GN F ++L
Sbjct: 291 --FAKRFEKVKLYPANGN---FVLIDL 312
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 5e-12
Identities = 50/274 (18%), Positives = 107/274 (39%), Gaps = 51/274 (18%)
Query: 116 AKFDL--NRIVVTAGATAANELLTFI---LADPGDALLVPTP---YYPGFDRDLRWRTGI 167
K+ + I++ AG+ ++++ F + +A L Y + + + G
Sbjct: 76 QKYKVQNENIIIGAGS---DQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAK----QCGA 128
Query: 168 KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLD 227
K S + + L +K+ ++ + + P+NPLG + S E +
Sbjct: 129 KCYKT--QSITHNLDEFKKLYETHKD------EIKLIFLCLPNNPLGECLDASEATEFIK 180
Query: 228 FATRKNIHLVSDEIYSGSAFSSSEFVSIAEI---LEARQY-KDSERVHIVYSLSKDLGLP 283
++ +V D Y +EF S + LE + K+ + V + + SK GL
Sbjct: 181 -GVNEDCLVVIDAAY-------NEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLG 232
Query: 284 GFRVGTIYSY-NDKVVTTARRMSS-FTLISSQTQYL-LASMLSNKKFTENYIKTNRERLQ 340
G R+G Y N +++ ++ + F +S+ +A+ + + +FTE ++ N +++
Sbjct: 233 GLRIG--YGIANANIISAFYKLRAPFN-VSNLALKAAVAA-MDDDEFTEKTLENNFSQME 288
Query: 341 KRYQMIIEGLRSAGIECLK--GNAGLFCWMNLSP 372
E + I+ + N F
Sbjct: 289 L----YKEFAKKHNIKIIDSYTN---FITYFFDE 315
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 45/270 (16%), Positives = 91/270 (33%), Gaps = 50/270 (18%)
Query: 101 RQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL---ADPGDALLVPTP---YY 154
R +A+++ + G + + G+ NE+L +L PG L P +
Sbjct: 75 RDELAAYITKQTG--VAVTRDNLWAANGS---NEILQQLLQAFGGPGRTALGFQPSYSMH 129
Query: 155 PGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLG 214
P + T + + + + +F+I + + V +T P+NP G
Sbjct: 130 PILAKG----THTEFIAVSRGA--DFRIDMDVALEEIRAK-----QPDIVFVTTPNNPTG 178
Query: 215 ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILE-ARQYKDSERVHIV 273
+E +++ ++ DE Y +EF +Y ++ +
Sbjct: 179 DVTSLDDVERIIN---VAPGIVIVDEAY-------AEFSPSPSATTLLEKYPT--KLVVS 226
Query: 274 YSLSKDLGLPGFRVGTIYSYNDKVVTTA-RRM-SSFTLISSQTQYLLASMLSNKKFTENY 331
++SK G R+G Y + A + + L S+ +Q L + T
Sbjct: 227 RTMSKAFDFAGGRLG--YFVANPAFIDAVMLVRLPYHL-SALSQAAAIVALRHSADTLGT 283
Query: 332 IKTN---RERLQKRYQMIIEGLRSAGIECL 358
++ R R+ L G +
Sbjct: 284 VEKLSVERVRVA-------ARLEELGYAVV 306
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 41/233 (17%), Positives = 86/233 (36%), Gaps = 41/233 (17%)
Query: 122 RIVVTAGATAANELLTFIL---ADPGDALLVPTP---YYPGFDRDLRWRTGIKIVPIHCD 175
+++ G+ +E+++ + A PG ++ P P Y + G++ V +
Sbjct: 87 EVLLGNGS---DEIISMLALAAARPGAKVMAPVPGFVMYAMSAQF----AGLEFVGVPLR 139
Query: 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIH 235
+ +F + A+ AA E + V + P+NP G + +E ++ A
Sbjct: 140 A--DFTLDRGAMLAAMAEH-----QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCR 192
Query: 236 --LVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSY 293
+V DE Y F + + + + ++ ++SK LGL G R+G Y
Sbjct: 193 SLVVVDEAY-------QPFAQESWMSRLTDF---GNLLVMRTVSK-LGLAGIRLG--YVA 239
Query: 294 NDKVVTTA--RRMSSFTLISSQTQYLLASMLSNKKFTENYIKTN---RERLQK 341
D + + + + T+ L + + R R+ +
Sbjct: 240 GDPQWLEQLDKVRPPYNV-NVLTEATALFALEHVAVLDEQAAQLRAERSRVAE 291
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 3e-10
Identities = 50/283 (17%), Positives = 89/283 (31%), Gaps = 64/283 (22%)
Query: 101 RQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTP---YYPG 156
+ +A + +++ G +E I + P Y
Sbjct: 57 MRKLAE--------HFSCPEDNLMLVRGI---DECFDRISAEFSSMRFVTAWPGFDGYRA 105
Query: 157 FDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGAT 216
+G++ I ++ + P L R V++ NPSNP G
Sbjct: 106 RIA----VSGLRHFEIGLT--DDLLLDPNDLAQVS--------RDDCVVLANPSNPTGQA 151
Query: 217 IQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSL 276
+ L++L + L+ DE Y ++ S AR E + S
Sbjct: 152 LSAGELDQLRQ----RAGKLLIDETY-------VDYSS----FRARGLAYGENELVFRSF 196
Query: 277 SKDLGLPGFRVGTIYSYNDKVVTTA--RRMSSFTLISSQTQYLLASMLSNKKFTENYIKT 334
SK GL G R+G + + A R+ + + + L + L N + E +I
Sbjct: 197 SKSYGLAGLRLG--ALFGPSELIAAMKRKQWFCN-VGTLDLHALEAALDNDRAREAHIAK 253
Query: 335 N---RERLQKRYQMIIEGLRSAGIECL--KGNAGLFCWMNLSP 372
R R+ + LR G + N F + +
Sbjct: 254 TLAQRRRVA-------DALRGLGYRVASSEAN---FVLVENAA 286
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 3e-10
Identities = 53/232 (22%), Positives = 94/232 (40%), Gaps = 37/232 (15%)
Query: 121 NRIVVTAGATAANELLTFIL---ADPG-DALLVPTPYYP--GFDRDLRWRTGIKIVPIHC 174
+++V+ GA +E + ++ +PG DA+L P Y + G++ +
Sbjct: 76 EQVLVSRGA---DEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAET---IGVECRTVPT 129
Query: 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNI 234
+N+Q+ Q + V+ V + +P+NP G I LL+ TR
Sbjct: 130 L--DNWQLDLQGISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLE-LTRGKA 179
Query: 235 HLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYN 294
+V+DE Y F S+A L +Y + I+ +LSK L G R G + N
Sbjct: 180 IVVADEAY--IEFCPQA--SLAGWLA--EY---PHLAILRTLSKAFALAGLRCGFTLA-N 229
Query: 295 DKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTE-----NYIKTNRERLQK 341
++V+ ++ + +S+ + A LS + I RE L
Sbjct: 230 EEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIA 281
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 1e-09
Identities = 53/276 (19%), Positives = 93/276 (33%), Gaps = 67/276 (24%)
Query: 101 RQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL---ADPGDALLVPTP---YY 154
R+ FD + I++ G+ +E+L ++ A G+ + P YY
Sbjct: 71 REVAGELY--------GFDPSWIIMANGS---DEVLNNLIRAFAAEGEEIGYVHPSYSYY 119
Query: 155 PGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLG 214
G ++ +F+I + +T P+ PLG
Sbjct: 120 GTLAE----VQGARVRTFGLT--GDFRIAGFPERY----------EGKVFFLTTPNAPLG 163
Query: 215 ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV--SIAEILEARQYKDSERVHI 272
+ ++EL R LV DE Y +EF + E++ E V +
Sbjct: 164 PSFPLEYIDELAR---RCAGMLVLDETY-------AEFAESNALELVRRH-----ENVVV 208
Query: 273 VYSLSKDLGLPGFRVGTIYSYNDKVVTTA-RRM-SSFTLISSQTQYLLASMLSNKKFTEN 330
+LSK L G R+G + V A ++ + L Q + L ++ +
Sbjct: 209 TRTLSKSYSLAGMRIG--LAIARPEVIAALDKIRDHYNL-DRLAQAACVAALRDQAYLSE 265
Query: 331 YIKTN---RERLQKRYQMIIEGLRSAGIECL--KGN 361
+ RE LRS G + + +GN
Sbjct: 266 CCRRIRETREWFT-------TELRSIGYDVIPSQGN 294
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 7e-08
Identities = 53/266 (19%), Positives = 90/266 (33%), Gaps = 58/266 (21%)
Query: 101 RQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTP---YYPGF 157
+ + S++ N + V GA +E++ ++ D + P Y F
Sbjct: 62 IEKILSYL-----DTDFLSKNNVSVGNGA---DEIIYVMML-MFDRSVFFPPTYSCYRIF 112
Query: 158 DRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI 217
+ G K + + + +I E E V I NP+NP G
Sbjct: 113 AKA----VGAKFLEVPLTK--DLRI----PEVNVGEG-------DVVFIPNPNNPTGHVF 155
Query: 218 QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLS 277
+R +E +L + DE Y F +V ++Y E + ++ + S
Sbjct: 156 EREEIERILK----TGAFVALDEAY--YEFHGESYVD-----FLKKY---ENLAVIRTFS 201
Query: 278 KDLGLPGFRVGTIYSYNDKVVTTA-RRM-SSFTLISSQTQYLLASMLSNKKFTENYIKTN 335
K L RVG Y + A R+ F + S +Q L +++ E K
Sbjct: 202 KAFSLAAQRVG--YVVASEKFIDAYNRVRLPFNV-SYVSQMFAKVALDHREIFEERTKFI 258
Query: 336 ---RERLQKRYQMIIEGLRSAGIECL 358
RER++ LR G
Sbjct: 259 VEERERMK-------SALREMGYRIT 277
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 9e-08
Identities = 73/452 (16%), Positives = 125/452 (27%), Gaps = 148/452 (32%)
Query: 34 KAYDENPYEESTNP-------SGVIQMGLAENQVS--FDLLEEYLEQQPEASTWGKGAPG 84
+D ++ +I A + F L E+ +
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK--------- 81
Query: 85 FRENALFQDYHGLKS-----FRQ---AMASFMEQI----RGGR--AKFDLNRI-VVTAGA 129
F E L +Y L S RQ ++EQ + AK++++R+
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 130 TAANELLTFILADPGDALLVPTPYY--PGF-----------DRDLR--------WRTGIK 168
A EL P +L+ G ++ W +
Sbjct: 142 QALLEL------RPAKNVLI----DGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---LN 188
Query: 169 IVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDF 228
+ +C+S Q L + + + R +N + + L LL
Sbjct: 189 L--KNCNSPETVLEMLQKL---LYQID-PNWTSRSDHSSNIKLRIHSIQAE--LRRLLKS 240
Query: 229 ATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVG 288
+N LV + + A+ A F +
Sbjct: 241 KPYENCLLVLLNVQN------------AKAWNA-----------------------FNLS 265
Query: 289 TIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIE 348
K++ T R +S+ T ++ + T + +K L K +
Sbjct: 266 C------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK---SLLLKYLDCRPQ 316
Query: 349 GLRSAGIECLKGNAGLFCWMNLSPLL----EEQTREGELALWDSMLHEV--KLNISPGSS 402
L E L N P E R+G LA WD+ H KL SS
Sbjct: 317 DLPR---EVLTTN----------PRRLSIIAESIRDG-LATWDNWKHVNCDKLTTIIESS 362
Query: 403 CHCSEPGWFRVCF---------ANMSEQTLEV 425
+ EP +R F A++ L +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 4e-05
Identities = 36/258 (13%), Positives = 75/258 (29%), Gaps = 66/258 (25%)
Query: 219 RSVLEELLD-FATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLS 277
+ +L D F + V D S S E I I+ ++ ++
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQD--MPKSILSKEE---IDHIIMSKD--AVSGTLRLFWTL 71
Query: 278 KDLGLPGFR--VGTIYSYN-----DKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTEN 330
+ V + N + T R+ S T + + + ++ + +N
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--------DRLYNDN 123
Query: 331 --YIKTNRERLQKRYQMI--IEGLRSAGIECLKGNAG----------------------- 363
+ K N RLQ ++ + LR A + G G
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTL 423
+F W+NL + E L + +L+++ N + S + +
Sbjct: 184 IF-WLNLK---NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK------------LRI 227
Query: 424 EVALKRIHNFMQKRERRR 441
+ ++ +
Sbjct: 228 HSIQAELRRLLKSKPYEN 245
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 20/144 (13%)
Query: 108 MEQIRGGRAKFDLN--RIVVTAGATAANELLTFILADPGDALLVP-----TPYYPGFDRD 160
+ I KF L VT GA A + LA +++ + Y
Sbjct: 56 HDFIHNQLPKF-LGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVA----- 109
Query: 161 LRW-RTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQR 219
R G+ I + ++ ITP+ +E + K V LIT P G +
Sbjct: 110 --AERAGLNIALVPKTDYPDYAITPENFAQTIEETK-KRGEVVLALITYPDGNYG-NL-- 163
Query: 220 SVLEELLDFATRKNIHLVSDEIYS 243
++++ + ++ L+ + Y+
Sbjct: 164 PDVKKIAKVCSEYDVPLLVNGAYA 187
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Length = 755 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 5e-05
Identities = 44/322 (13%), Positives = 80/322 (24%), Gaps = 45/322 (13%)
Query: 124 VVTAGATAANELLTFILADPGDALLVP----------------TPYY--PGFDRDLRWRT 165
V G + +N + D ++V P Y P +R
Sbjct: 225 SVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNR----YG 280
Query: 166 GIKIVPIHCDSSNNFQITPQALEAAYKE----AESKDMRVRGVLITNPSNPLGATIQRSV 221
I + + P+ L+ E + + ++TN G
Sbjct: 281 IIGPIYPQE-------MQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVC---YN 329
Query: 222 LEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG 281
+E D + + L DE + G A + + + + V +S K
Sbjct: 330 AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHK--L 387
Query: 282 LPGFRVGTIYSYNDKVVTTAR---RMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRER 338
L + + + ++ Y + SN +
Sbjct: 388 LNALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAI--CASNDVAVSMMDGNSGLS 445
Query: 339 LQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS 398
L + R A K W E T +D KL +
Sbjct: 446 LTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTT 505
Query: 399 PGSSCHCSEPGWFRVCFANMSE 420
C PG F ++ +
Sbjct: 506 -VQDCWVMHPGESWHGFKDIPD 526
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 8e-04
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 166 GIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSV--LE 223
G+K+ I D F + AL+ A + ++ + V+ T LG T S L
Sbjct: 203 GVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVAT-----LGTTSCCSFDNLL 255
Query: 224 ELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILE 260
E+ ++I L D Y+GSAF EF + +E
Sbjct: 256 EVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVE 292
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 442 | |||
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 100.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 100.0 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 100.0 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 100.0 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 100.0 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 100.0 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 100.0 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.98 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.97 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.97 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.97 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.97 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.97 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.97 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.97 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.97 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.97 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.97 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.97 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.97 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.97 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.97 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.97 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.97 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.97 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.97 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.97 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.97 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.97 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.97 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.97 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.97 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.97 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.97 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.97 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.97 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.97 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.96 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.96 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.96 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.96 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.96 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.96 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.96 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.96 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.96 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.96 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.96 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.96 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.96 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.96 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.96 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.96 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.96 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.96 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.96 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.96 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.96 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.96 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.96 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.95 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.95 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.95 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.95 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.95 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.95 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.95 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.95 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.95 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.95 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.95 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.95 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.95 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.95 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.95 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.95 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.95 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.95 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.95 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.94 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.94 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.94 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.94 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.94 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.94 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.94 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.94 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.94 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.94 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.93 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.93 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.93 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.93 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.93 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.93 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.92 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.92 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.92 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.92 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.91 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.91 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.91 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.91 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.91 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.9 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.9 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.9 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.9 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.89 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.89 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.82 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.88 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.88 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.86 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.8 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.76 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.75 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.74 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.73 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.71 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.63 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.62 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.58 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.57 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.51 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 83.12 |
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-59 Score=463.90 Aligned_cols=425 Identities=60% Similarity=1.059 Sum_probs=355.4
Q ss_pred cchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCceeeeecccccccHHHHHHHHHhCCCCcccC-CCCCCCCcccccC
Q 046900 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQPEASTWG-KGAPGFRENALFQ 92 (442)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Y~ 92 (442)
+|+|+.+..++++++++.+|+.+.+++|+++.||.++|+|++++|+++.+.+.+++.+......+. +|....+....|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~ 83 (435)
T 3piu_A 4 LSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQ 83 (435)
T ss_dssp --------------CTTHHHHHHHHSBCBTTTBTTSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCC
T ss_pred cchhhhhcccccCcchhhHHHHhhcCCCCcccCCCCeEEeccccccccHHHHHHHHHhCccccccccccccccccccccC
Confidence 689999999999999999999999999999999999999999999999999999998876432211 1222223446799
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEE
Q 046900 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPI 172 (442)
Q Consensus 93 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v 172 (442)
+..|..+||+++|+++++.++.++++++++|++|+|+++++..++.+++++||.|+++.|+|..+...+....|++++.+
T Consensus 84 ~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~ 163 (435)
T 3piu_A 84 DYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPI 163 (435)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEE
T ss_pred CCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEe
Confidence 99999999999999999877766778899999999999999999999999999999999999999887762389999999
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+++++++|.+|++.|++++++....+.++++|++++|+||||.+++.+++++|+++|++||+++|+||+|+.+.|++..+
T Consensus 164 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~ 243 (435)
T 3piu_A 164 HCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSF 243 (435)
T ss_dssp ECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCC
T ss_pred eCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Confidence 99887789999999999998866666688999999999999999999999999999999999999999999998888777
Q ss_pred ccHHHHHhhhcCC----CCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhH
Q 046900 253 VSIAEILEARQYK----DSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFT 328 (442)
Q Consensus 253 ~s~~~~~~~~~~~----~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~ 328 (442)
.++..+..+.+.+ ..+++++++||||.||++|+|+||++++++.+.+.+++...++..+++.|.++.+++.+.+++
T Consensus 244 ~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (435)
T 3piu_A 244 ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLT 323 (435)
T ss_dssp CCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHH
T ss_pred cCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhcCCCCHHHHHHHHHHhcChHHH
Confidence 7887776521000 037889999999999999999999999778888888877777778999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCC
Q 046900 329 ENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEP 408 (442)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~ 408 (442)
+++++++++.++++++.+.+.|++.|+++..+.+|+|+|++++.........+..++++.|++++||.+.||+.|+...+
T Consensus 324 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~ 403 (435)
T 3piu_A 324 KNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEP 403 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCC
Confidence 77888999999999999999999999999999999999999986543333334678889998888999999999987778
Q ss_pred CEEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 409 GWFRVCFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 409 ~~iRls~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
+++||+++..+++++++++++|++++++.+
T Consensus 404 ~~iRi~~~~~~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 404 GWFRVCFANLPERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp TEEEEECSSSCHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999986689999999999999998764
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-56 Score=443.66 Aligned_cols=424 Identities=57% Similarity=1.064 Sum_probs=346.0
Q ss_pred ccchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccC
Q 046900 13 GLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQ 92 (442)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 92 (442)
+||+|+.........+++..|+.+..++|++..++.++|+|+.++|+++++.+.+++...+......++...+.....|+
T Consensus 1 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 80 (428)
T 1iay_A 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQ 80 (428)
T ss_dssp CCCTTGGGC-----CCTTHHHHHHHHSBCCSSSSTTSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCC
T ss_pred CcccccccccCcccccccchhhhhccCCCCcccCCCceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCC
Confidence 48999988876667788999999999999998888899999999999998888888886653221111111112346799
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEE
Q 046900 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPI 172 (442)
Q Consensus 93 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v 172 (442)
++.|..+||+++|+++++.+|...++++++|++|+|+++++..++.+++++||.|+++.|+|..+...+....|++++.+
T Consensus 81 ~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v 160 (428)
T 1iay_A 81 DYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPI 160 (428)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEE
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEe
Confidence 88899999999999999887754447789999999999999999999999999999999999999875532379999999
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
|++.+++|.+|++.|++++++....+.++++|++++|+||||.+++.+++++|+++|+++|++||+||+|.++.|++..+
T Consensus 161 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~ 240 (428)
T 1iay_A 161 HCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQF 240 (428)
T ss_dssp CCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCC
T ss_pred ecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCc
Confidence 98766678899999999998654444578999999999999999999999999999999999999999999988876556
Q ss_pred ccHHHHHhhh--cCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHH
Q 046900 253 VSIAEILEAR--QYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTEN 330 (442)
Q Consensus 253 ~s~~~~~~~~--~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~ 330 (442)
.++..+.... .....++++++.||||.||++|+|+||++++++.+.+.+++...++.+++++|.++..++++.++.++
T Consensus 241 ~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 320 (428)
T 1iay_A 241 VSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDN 320 (428)
T ss_dssp CCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhcccCCHHHHHHHHHHhcChHHHHH
Confidence 6776665320 00013789999999999999999999999977777777776666677899999999999998776677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCE
Q 046900 331 YIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGW 410 (442)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~ 410 (442)
++++.++.++++++++.+.|++.|+++.++.+|+|+|++++............++++.|++++||.+.||..|+...+++
T Consensus 321 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~ 400 (428)
T 1iay_A 321 FLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGW 400 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCE
Confidence 88899999999999999999988988888878999999987532111122356788888877799999999887655689
Q ss_pred EEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 411 FRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 411 iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
+||+++..+++++++++++|++++++
T Consensus 401 iRis~~~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 401 FRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp EEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 99999844899999999999998865
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-51 Score=399.69 Aligned_cols=351 Identities=23% Similarity=0.416 Sum_probs=288.9
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|+|+.++++++ ++.+.+.+.+.... ....|++..|..+||+++++|+++.+| ..+++++|++
T Consensus 30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~~ 96 (385)
T 1b5p_A 30 GVDLVALTAGEPDFDTPEHVKEAARRALAQ-----------GKTKYAPPAGIPELREALAEKFRRENG--LSVTPEETIV 96 (385)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHT-----------TCCSCCCTTCCHHHHHHHHHHHHHTTC--CCCCGGGEEE
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCChHHEEE
Confidence 356899999988764 34444444332110 124688888999999999999998766 4567899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++.+++.+++++||.|++++|+|+.+...++. .|++++.++++++++|.+|+++|++++++ ++++|+
T Consensus 97 t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~ 169 (385)
T 1b5p_A 97 TVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRF-AGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALV 169 (385)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHH-TTCEEEEEECCGGGTTCCCHHHHHTTCCT------TEEEEE
T ss_pred cCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHH-cCCEEEEeecCcccCCCCCHHHHHHhcCC------CCEEEE
Confidence 99999999999999999999999999999999999885 89999999998656788999999988754 689999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++||||||.++|.+++++|+++|++||++||+||+|+++.+++ .+.++.++. .+++++++||||.+|++|+
T Consensus 170 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~-------~~~~i~~~s~SK~~~~~G~ 241 (385)
T 1b5p_A 170 VNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRVA-------PEHTLTVNGAAKAFAMTGW 241 (385)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTC-------TTTEEEEEESTTTTTCGGG
T ss_pred EeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHcC-------CCCEEEEEechhhcCCccc
Confidence 99999999999999999999999999999999999999988866 444554441 1679999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCce
Q 046900 286 RVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG 363 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 363 (442)
|+||+++ ++.+.+.+...... +.++.+.|.++.++++......+++++.++.++++++++.+.|++.|+++..++++
T Consensus 242 RiG~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 320 (385)
T 1b5p_A 242 RIGYACG-PKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGA 320 (385)
T ss_dssp CCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBT
T ss_pred ceEEEEe-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCee
Confidence 9999999 56666666554332 46788999999888875211135688889999999999999998888898889999
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
+|+|++++... .+..++++.|+++ ||.+.||+.|+. ++++|||++. +++++++++++|+++++
T Consensus 321 ~~~~~~~~~~~-----~~~~~l~~~l~~~-gv~v~~g~~f~~--~~~iRis~~~-~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 321 FYVLMDTSPIA-----PDEVRAAERLLEA-GVAVVPGTDFAA--FGHVRLSYAT-SEENLRKALERFARVLG 383 (385)
T ss_dssp TEEEEECTTTC-----SSHHHHHHHHHHT-TEECEESGGGTC--TTEEEEECCS-CHHHHHHHHHHGGGGC-
T ss_pred EEEEEecCCCC-----CCHHHHHHHHHHC-CeEEecccccCC--CCeEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 99999987311 1367888888854 999999999864 6799999996 89999999999988764
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-49 Score=397.72 Aligned_cols=349 Identities=19% Similarity=0.321 Sum_probs=288.5
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc-CCCCeEEEcCCCCcChHHhHhhhcC
Q 046900 88 NALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA-DPGDALLVPTPYYPGFDRDLRWRTG 166 (442)
Q Consensus 88 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~~~G 166 (442)
...|++..|..++|+++++++.+++| +++++++|++|+|+++++.+++.+++ ++||.|+++.|+|+.+...++. .|
T Consensus 127 ~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~~-~g 203 (500)
T 3tcm_A 127 TGAYSHSQGIHGLRDAIASGIASRDG--FPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIAL-HG 203 (500)
T ss_dssp SSSCCCTTCCHHHHHHHHHHHHHHHS--SCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHHH-TT
T ss_pred CCCcCCCcChHHHHHHHHHHHHhhcC--CCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHHH-cC
Confidence 46799999999999999999998877 55789999999999999999999998 8999999999999999999985 99
Q ss_pred cEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 167 IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 167 ~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
++++.++++++++|.+|++.|++++++...++.++++|+++||+||||.++|.+++++|+++|+++++++|+||+|+++.
T Consensus 204 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~ 283 (500)
T 3tcm_A 204 GALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENI 283 (500)
T ss_dssp CEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred CEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccc
Confidence 99999999988889999999999999876666688999999999999999999999999999999999999999999999
Q ss_pred CCC-CCcccHHHHHhhhcC-CCCCcEEEEecCcccC-CCCCceeEEEeec--CHHHHHHHHHccc-cCCCcHHHHHHHHH
Q 046900 247 FSS-SEFVSIAEILEARQY-KDSERVHIVYSLSKDL-GLPGFRVGTIYSY--NDKVVTTARRMSS-FTLISSQTQYLLAS 320 (442)
Q Consensus 247 ~~~-~~~~s~~~~~~~~~~-~~~~~vi~~~S~SK~~-g~~G~RiG~i~~~--~~~~~~~~~~~~~-~~~~s~~~q~~~~~ 320 (442)
|++ ..+.++..+..+.+. ....++++++||||.| |++|+|+||+++. ++.+.+.+.+... .+..+.+.|.++..
T Consensus 284 ~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~ 363 (500)
T 3tcm_A 284 YVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASL 363 (500)
T ss_dssp CCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred cCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHhcccCCCHHHHHHHHH
Confidence 864 467788776554211 1234689999999999 8999999999872 4455555554433 45678899999999
Q ss_pred HhcCch-------hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEEEEecCCccc------ccChhhHHHHH
Q 046900 321 MLSNKK-------FTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSPLLE------EQTREGELALW 386 (442)
Q Consensus 321 ~l~~~~-------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~l~ 386 (442)
++.... ...+++.++++.++++++++.+.|++. |+++.++++|+|+|+++..... ..+..+...++
T Consensus 364 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~ 443 (500)
T 3tcm_A 364 VMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYA 443 (500)
T ss_dssp HHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHH
T ss_pred HhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHH
Confidence 987532 124557788899999999999999998 9999999999999966542110 00111234455
Q ss_pred HHHHHcCcEEEeCCCCCCC-CCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 387 DSMLHEVKLNISPGSSCHC-SEPGWFRVCFANMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 387 ~~l~~~~gi~v~pg~~f~~-~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
..+++++||.+.||+.|+. .+.++||++++. +++++++++++|++++++..++
T Consensus 444 ~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~-~~e~i~~~i~~l~~~~~~~~~~ 497 (500)
T 3tcm_A 444 LRLLESTGIVVVPGSGFGQVPGTWHFRCTILP-QEDKIPAVISRFTVFHEAFMSE 497 (500)
T ss_dssp HHHHHHHCEECEESTTTCCCTTCCBEEEESCS-CTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEEeCcccCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777999999999985 456789999994 8999999999999999887654
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=391.08 Aligned_cols=361 Identities=19% Similarity=0.320 Sum_probs=294.6
Q ss_pred Cceeeeeccccc---ccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEE
Q 046900 48 SGVIQMGLAENQ---VSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 48 ~~~i~l~~~~n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 124 (442)
+++|+|+.+.+. ++++.+.+.+.+...... ....+|++..|..+||+++++++.+.+| .+ ++++|+
T Consensus 76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~--------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~-~~~~v~ 144 (448)
T 3aow_A 76 SDIISLAGGLPNPKTFPKEIIRDILVEIMEKYA--------DKALQYGTTKGFTPLRETLMKWLGKRYG--IS-QDNDIM 144 (448)
T ss_dssp SSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSH--------HHHHSCCCTTCCHHHHHHHHHHHHHHHC--CC-TTSEEE
T ss_pred CCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhh--------HHHhCCCCCCCcHHHHHHHHHHHHHhcC--cC-ChhhEE
Confidence 368999877543 356666655544321100 0135798888999999999999977766 33 789999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++.+++++++++||.|+++.|+|..+...++. .|++++.+|++++ .+|++.|++.++.....+.++++|
T Consensus 145 ~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~---g~d~~~L~~~l~~~~~~~~~~k~v 220 (448)
T 3aow_A 145 ITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNF-YEPQYIQIPLDDE---GMKVEILEEKLKELKSQGKKVKVV 220 (448)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHT-TCCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEE
T ss_pred EeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHH-cCCEEEEeccCCC---CCCHHHHHHHHhhhhccCCCCeEE
Confidence 999999999999999999999999999999999999885 8999999999764 389999999987221122368887
Q ss_pred -EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 205 -LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 205 -~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
++++|+||||.+++.+++++|+++|++||++||+||+|+++.+++..+.++.++.. .+++++++||||.++ +
T Consensus 221 ~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~------~~~vi~~~S~SK~~~-~ 293 (448)
T 3aow_A 221 YTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDN------EGRVIYLGTFSKILA-P 293 (448)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCT------TSCEEEEEESTTTTC-G
T ss_pred EECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCC------CCCEEEEccchhhcc-c
Confidence 46899999999999999999999999999999999999999987765566665533 378999999999999 9
Q ss_pred CceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC---CCeee
Q 046900 284 GFRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA---GIECL 358 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~ 358 (442)
|+|+||++++ +.+.+.+..... .+..++++|.++.++|+...+ .+++++.++.++++++.+.+.|++. |+++.
T Consensus 294 GlriG~v~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~ 371 (448)
T 3aow_A 294 GFRIGWMVGD-PGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYL-EKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWT 371 (448)
T ss_dssp GGCCEEEEEC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEC
T ss_pred cccEEEEEeC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Confidence 9999999994 666666654332 245688999999999987643 6788999999999999999999875 78888
Q ss_pred cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC--CCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 359 KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS--EPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 359 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~--~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
.|.+|+|+|++++... +..++++.|+++ ||.+.||+.|+.. .++++||+++..+++++++++++|++++++
T Consensus 372 ~p~~g~~~~v~~~~~~------~~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~~ 444 (448)
T 3aow_A 372 KPEGGMFIWVTLPDGI------DSKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKE 444 (448)
T ss_dssp CCSBSSEEEEECSTTC------CHHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHHHH
T ss_pred CCCccEEEEEEcCCCC------CHHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 8899999999997632 267889999888 9999999988653 357999999865789999999999999987
Q ss_pred HHh
Q 046900 437 RER 439 (442)
Q Consensus 437 ~~~ 439 (442)
..+
T Consensus 445 ~~~ 447 (448)
T 3aow_A 445 ELK 447 (448)
T ss_dssp HHC
T ss_pred HHh
Confidence 643
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-49 Score=394.49 Aligned_cols=360 Identities=18% Similarity=0.292 Sum_probs=293.0
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
..++|||+.+.+.++ ++.+.+.+.+.... ....+|++..|.++||+++++++.+.+| .++++++|++
T Consensus 56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~v~~ 123 (447)
T 3b46_A 56 GRELINLGQGFFSYSPPQFAIKEAQKALDI----------PMVNQYSPTRGRPSLINSLIKLYSPIYN--TELKAENVTV 123 (447)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTTS----------GGGGSCCCTTCCHHHHHHHHHHHTTTTT--SCCCGGGEEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhC----------cCCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEEE
Confidence 457899999987653 35566665554321 0245798888999999999999987665 4467889999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCC----------CCcCCHHHHHHHHHHHH
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSN----------NFQITPQALEAAYKEAE 195 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~----------~~~~d~~~l~~~l~~~~ 195 (442)
|+|+++++.+++.+++++||.|++++|+|+.+...++. .|++++.+|+++++ +|.+|++.|++.+++
T Consensus 124 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-- 200 (447)
T 3b46_A 124 TTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIEL-CGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS-- 200 (447)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-TTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCT--
T ss_pred eCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHH-cCCEEEEEeCCCccccccccccccCcccCHHHHHHhhcc--
Confidence 99999999999999999999999999999999999885 89999999987653 688999999988753
Q ss_pred hcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHH-HhhhcCCCCCcEEEEe
Q 046900 196 SKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEI-LEARQYKDSERVHIVY 274 (442)
Q Consensus 196 ~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~-~~~~~~~~~~~vi~~~ 274 (442)
++++|++++|+||||.++|.+++++|+++|++||++||+||+|.++.|++ .+.++..+ ... .+++++++
T Consensus 201 ----~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~-----~~~~i~i~ 270 (447)
T 3b46_A 201 ----KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSPEI-----GQLTLTVG 270 (447)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCHHH-----HTTEEEEE
T ss_pred ----CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-CCcCHHHcCCCC-----CCcEEEEe
Confidence 78999999999999999999999999999999999999999999998876 33444444 211 36889999
Q ss_pred cCcccCCCCCceeEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046900 275 SLSKDLGLPGFRVGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS 352 (442)
Q Consensus 275 S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 352 (442)
|+||.||++|+|+||+++.++.+.+.+.... ..+..+++.|.++.++|+.... +.+++++++.++++++++.+.|++
T Consensus 271 S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 349 (447)
T 3b46_A 271 SAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALK-IGYFEKMRQEYINKFKIFTSIFDE 349 (447)
T ss_dssp EHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999994456666655432 3456788999998888875422 556888999999999999999998
Q ss_pred CCCeeecCCceEEEEEecCCcccccC---------hhhHHHHHHHHHHcCcEEEeCCCCCCCC-----CCCEEEEEeecC
Q 046900 353 AGIECLKGNAGLFCWMNLSPLLEEQT---------REGELALWDSMLHEVKLNISPGSSCHCS-----EPGWFRVCFANM 418 (442)
Q Consensus 353 ~g~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~l~~~l~~~~gi~v~pg~~f~~~-----~~~~iRls~~~~ 418 (442)
.|+++..|++|+|+|++++....... ..++.++++.|++++||.+.||+.|+.. .++++||+++.
T Consensus 350 ~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~- 428 (447)
T 3b46_A 350 LGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK- 428 (447)
T ss_dssp HTCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS-
T ss_pred CCCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeC-
Confidence 89998889999999999975310000 1146688888887679999999988743 25799999997
Q ss_pred CHHHHHHHHHHHHHH
Q 046900 419 SEQTLEVALKRIHNF 433 (442)
Q Consensus 419 ~~e~i~~~l~~l~~~ 433 (442)
+++++++++++|+++
T Consensus 429 ~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 429 DDAYLENAVERLKLL 443 (447)
T ss_dssp CHHHHHHHHHHGGGG
T ss_pred CHHHHHHHHHHHHHH
Confidence 899999999999873
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-48 Score=379.69 Aligned_cols=353 Identities=18% Similarity=0.293 Sum_probs=293.2
Q ss_pred CCCCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCc-cCCC-
Q 046900 45 TNPSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAK-FDLN- 121 (442)
Q Consensus 45 ~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~~- 121 (442)
....++|||+.+++.++ ++.+.+.+.+... ....|++..|..++|+++++|+.+.++ .. ++++
T Consensus 27 ~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~~ 92 (396)
T 3jtx_A 27 PEGMEAVPLHIGEPKHPTPKVITDALTASLH------------ELEKYPLTAGLPELRQACANWLKRRYD--GLTVDADN 92 (396)
T ss_dssp CTTCCCEECSCCSCCSCCCHHHHHHHHHTGG------------GGGSCCCTTCCHHHHHHHHHHHHHHTT--TCCCCTTT
T ss_pred ccCCCeEEeCCcCCCCCCCHHHHHHHHHHhh------------hccCCCCCCCcHHHHHHHHHHHHHhcC--CCCCCCCC
Confidence 34567899999998875 3666666665531 246798888999999999999998876 33 5688
Q ss_pred cEEEecChHHHHHHHHHhhcCCC-----CeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHh
Q 046900 122 RIVVTAGATAANELLTFILADPG-----DALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAES 196 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~~~g-----d~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~ 196 (442)
+|++|+|+++++.+++.+++++| |.|+++.|+|..+...++. .|++++.++++ +++|.+|++.|++++.+
T Consensus 93 ~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~-~g~~~~~v~~~-~~g~~~d~~~l~~~~~~--- 167 (396)
T 3jtx_A 93 EILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLL-GGGEIHFANCP-APSFNPDWRSISEEVWK--- 167 (396)
T ss_dssp SEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHH-TTCEEEEEECC-TTTCCCCGGGSCHHHHH---
T ss_pred eEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHH-cCCEEEEeecC-CCCCccCHHHHHHhhcc---
Confidence 99999999999999999999997 7999999999999998884 99999999994 45788999999999986
Q ss_pred cCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecC
Q 046900 197 KDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSL 276 (442)
Q Consensus 197 ~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~ 276 (442)
+++++++++|+||||.+++.+++++|+++|++||+++|+||+|+++.+++..+.+......... ...+++++++||
T Consensus 168 ---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~ 243 (396)
T 3jtx_A 168 ---RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLG-RSRQKLLMFTSL 243 (396)
T ss_dssp ---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTT-CCCTTEEEEEES
T ss_pred ---CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcc-cccCcEEEEecc
Confidence 7899999999999999999999999999999999999999999999887744445444321100 014789999999
Q ss_pred cccCCCCCceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 046900 277 SKDLGLPGFRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAG 354 (442)
Q Consensus 277 SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 354 (442)
||.|+++|+|+||+++ ++.+.+.+..... .+.++++.|.++.+++... +++++.++.++++++.+.+.|++.
T Consensus 244 sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~- 317 (396)
T 3jtx_A 244 SKRSNVPGLRSGFVAG-DAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDE----QHVIDNRRLYQEKFERVIPILQQV- 317 (396)
T ss_dssp TTTSSCGGGCCEEEEE-CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred ccccCCcccceEEEEe-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 9999999999999998 5667666655433 3567899999999988864 357788899999999999999876
Q ss_pred CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC------CCCCEEEEEeecCCHHHHHHHHH
Q 046900 355 IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC------SEPGWFRVCFANMSEQTLEVALK 428 (442)
Q Consensus 355 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~------~~~~~iRls~~~~~~e~i~~~l~ 428 (442)
+.+..+.+|+|+|++++.. +..+++..|++++||.+.||+.|+. ...+++||+++. ++++++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~-~~~~i~~~l~ 389 (396)
T 3jtx_A 318 FDVKLPDASFYIWLKVPDG-------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA-DVATCVKAAE 389 (396)
T ss_dssp SCCCCCSSSSEEEEECTTS-------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS-CHHHHHHHHH
T ss_pred CCccCCCeeEEEEEECCCC-------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC-CHHHHHHHHH
Confidence 5667788999999999862 2678888887767999999999875 246899999998 9999999999
Q ss_pred HHHHHH
Q 046900 429 RIHNFM 434 (442)
Q Consensus 429 ~l~~~l 434 (442)
+|++++
T Consensus 390 ~l~~~l 395 (396)
T 3jtx_A 390 DIVSLY 395 (396)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 999875
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=387.82 Aligned_cols=349 Identities=19% Similarity=0.293 Sum_probs=280.0
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCC----eEEEcCCCCcChHHhHhh
Q 046900 88 NALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGD----ALLVPTPYYPGFDRDLRW 163 (442)
Q Consensus 88 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd----~Vl~~~p~y~~~~~~~~~ 163 (442)
...|++..|.+++|++||+|+.+++| ++++++++|++|+|+++++.+++.+|+++|| .|+++.|+|+.|...+..
T Consensus 122 ~~~Y~~~~G~~~lr~~ia~~~~~~~g-G~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~~ 200 (498)
T 3ihj_A 122 LGSYSASQGVNCIREDVAAYITRRDG-GVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISE 200 (498)
T ss_dssp ------CCSCHHHHHHHHHHHHHHTT-TCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcC-CCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHHH
Confidence 45799999999999999999998763 2557899999999999999999999999875 999999999999999985
Q ss_pred hcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCC
Q 046900 164 RTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYS 243 (442)
Q Consensus 164 ~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~ 243 (442)
.|++++.++++++++|.+|+++|++.+++... +.++++|+++||+||||.++|.+++++|+++|++|+++||+||+|+
T Consensus 201 -~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~ 278 (498)
T 3ihj_A 201 -LDAIQVNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQ 278 (498)
T ss_dssp -TTCEEEEEECBGGGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred -cCCEEEEeeccccccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCcc
Confidence 89999999999888899999999999987422 1358999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-CcccHHHHHhhhcC--CCCCcEEEEecCcccC-CCCCceeEEEee--cCHHHHHHHHHccc-cCCCcHHHHH
Q 046900 244 GSAFSSS-EFVSIAEILEARQY--KDSERVHIVYSLSKDL-GLPGFRVGTIYS--YNDKVVTTARRMSS-FTLISSQTQY 316 (442)
Q Consensus 244 ~~~~~~~-~~~s~~~~~~~~~~--~~~~~vi~~~S~SK~~-g~~G~RiG~i~~--~~~~~~~~~~~~~~-~~~~s~~~q~ 316 (442)
++.|++. .+.++.++..+.+. ....++++++||||.| |++|+|+||++. .++.+.+.+.+... ....+.+.|.
T Consensus 279 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~~~~~~~~q~ 358 (498)
T 3ihj_A 279 DNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQA 358 (498)
T ss_dssp TCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred ccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhccCCCCHHHHH
Confidence 9999764 67788877543110 0124589999999999 899999999983 36777776665433 3556789999
Q ss_pred HHHHHhcCc----hhHH---HHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEEEEecCCccc------ccChhhH
Q 046900 317 LLASMLSNK----KFTE---NYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSPLLE------EQTREGE 382 (442)
Q Consensus 317 ~~~~~l~~~----~~~~---~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~------~~~~~~~ 382 (442)
++..++++. ..+. ++.++.++.++++++++.+.|++. |+++.+|++|+|+|++++.... ..+....
T Consensus 359 a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~ 438 (498)
T 3ihj_A 359 AMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPD 438 (498)
T ss_dssp HHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHH
T ss_pred HHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcH
Confidence 999998752 1112 334677889999999999999987 9999999999999987642110 0011122
Q ss_pred HHHHHHHHHcCcEEEeCCCCCCC-CCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 383 LALWDSMLHEVKLNISPGSSCHC-SEPGWFRVCFANMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 383 ~~l~~~l~~~~gi~v~pg~~f~~-~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
..++..+++++||.+.||+.|+. .+++++|++++. +++++++++++|+++++++.++
T Consensus 439 ~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~-~~e~l~~~i~~L~~~~~~~~~~ 496 (498)
T 3ihj_A 439 MFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILP-PVEKLKTVLQKVKDFHINFLEK 496 (498)
T ss_dssp HHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 33366777767999999999985 446799999985 8999999999999999987654
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-48 Score=383.19 Aligned_cols=342 Identities=15% Similarity=0.202 Sum_probs=268.7
Q ss_pred Cceeeeecccc------cccHHHHHHHHHhCC-CCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC
Q 046900 48 SGVIQMGLAEN------QVSFDLLEEYLEQQP-EASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120 (442)
Q Consensus 48 ~~~i~l~~~~n------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 120 (442)
.++|||++++. +.+++.+.+... .. .. ....+|++..|.++||+++++|+.+..+ ..+++
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~----------~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~ 95 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTEN----------YKEKPYLLGNGTEDFSTLTQNLIFGNNS--KYIED 95 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHH----------CCCCCCCTTSSCHHHHHHHHHHHHCSSC--TTTTT
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCC----------CCCCCCCCCCCcHHHHHHHHHHHcCCCC--ccccc
Confidence 47899999862 223466666543 21 00 1246799999999999999999975433 23456
Q ss_pred Cc--EEEecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHh
Q 046900 121 NR--IVVTAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAES 196 (442)
Q Consensus 121 ~~--i~~t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~ 196 (442)
++ |++|+|+++++.+++.++++ + |.|++++|+|+.|...++. .|++++.+|+.++++|.+|++.|++.+++.
T Consensus 96 ~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-- 171 (405)
T 3k7y_A 96 KKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIES-RGFNLKYINFFDYNLIDINYDLFLNDLRNI-- 171 (405)
T ss_dssp TCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHT-TTCEEEEECCEETTTTEECHHHHHHHHHHS--
T ss_pred cceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHH-cCCeEEEEeccccccCCcCHHHHHHHHHhC--
Confidence 64 69999999999999999987 8 9999999999999999995 999999999854557899999999999752
Q ss_pred cCCceeEEEEeCC-CCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC--CcccHHHHHhhhcCCCCCcEEEE
Q 046900 197 KDMRVRGVLITNP-SNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS--EFVSIAEILEARQYKDSERVHIV 273 (442)
Q Consensus 197 ~~~~~~~v~l~~P-~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~--~~~s~~~~~~~~~~~~~~~vi~~ 273 (442)
.+++++++++| |||||.+++.+++++|+++|++|+++||+||+|.++.+++. ...++..+... .+++|++
T Consensus 172 --~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~-----~~~~i~~ 244 (405)
T 3k7y_A 172 --PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEK-----NIAFSVC 244 (405)
T ss_dssp --CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTT-----TCCEEEE
T ss_pred --CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhc-----CCcEEEE
Confidence 24567787765 89999999999999999999999999999999999988642 22344444432 4789999
Q ss_pred ecCcccCCCCCceeEEEee--cCHHHHHHH----HHc--cccCCCcHHHHHHHHHHhcCchhH---HHHHHHHHHHHHHH
Q 046900 274 YSLSKDLGLPGFRVGTIYS--YNDKVVTTA----RRM--SSFTLISSQTQYLLASMLSNKKFT---ENYIKTNRERLQKR 342 (442)
Q Consensus 274 ~S~SK~~g~~G~RiG~i~~--~~~~~~~~~----~~~--~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~ 342 (442)
+||||+||++|||+||+++ +++.+.+.+ +.. ......+.+.|.++..++.+..+. .++++++++.|+++
T Consensus 245 ~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~ 324 (405)
T 3k7y_A 245 QSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNN 324 (405)
T ss_dssp EECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999864 455544333 222 122345678999999999885322 45567788899999
Q ss_pred HHHHHHHHH----hCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEE
Q 046900 343 YQMIIEGLR----SAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVC 414 (442)
Q Consensus 343 ~~~l~~~L~----~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls 414 (442)
|+.+.+.|+ +.| +++.+|+||||+|+.++. +++++| +++||.+.||. |||
T Consensus 325 R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-----------~~~~~L-~~~gV~v~p~~----------Ris 382 (405)
T 3k7y_A 325 RILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-----------KIAEHL-KTHHIYIINNG----------RIN 382 (405)
T ss_dssp HHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-----------GGTTTT-TTTTEECCTTS----------EEE
T ss_pred HHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH-----------HHHHHH-HHCCEeecCCC----------eEE
Confidence 999999999 776 578889999999988753 234566 67799999952 999
Q ss_pred eecCCHHHHHHHHHHHHHHHH
Q 046900 415 FANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 415 ~~~~~~e~i~~~l~~l~~~l~ 435 (442)
++.++++++++++++|+++++
T Consensus 383 ~a~~~~~~i~~~~~~i~~~~~ 403 (405)
T 3k7y_A 383 VSGITKNNVDYIADKICLSLS 403 (405)
T ss_dssp GGGCCTTHHHHHHHHHHHHHH
T ss_pred EeccCHHHHHHHHHHHHHHHh
Confidence 987788999999999999875
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=383.81 Aligned_cols=353 Identities=18% Similarity=0.331 Sum_probs=291.9
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC-CcEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL-NRIV 124 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-~~i~ 124 (442)
..++|||+.+++.++ ++.+.+.+.+.... .....|++..|..++|+++|+|+.+.+| .++++ ++|+
T Consensus 46 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~----------~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~~v~ 113 (404)
T 2o1b_A 46 PLPLINMAVGIPDGPTPQGIIDHFQKALTI----------PENQKYGAFHGKEAFKQAIVDFYQRQYN--VTLDKEDEVC 113 (404)
T ss_dssp SSCCEECCCCSCSSCCCHHHHHHHHHHTTC----------HHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEE
T ss_pred CCCEEecCCcCCCCCCCHHHHHHHHHHHhC----------CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCcccEE
Confidence 345899999998764 45566666554321 0134688878999999999999988776 34566 7999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++.+++.+++++||.|+++.|+|..+...++. .|++++.+++++ ++|.+|++.|++.++. ++++|
T Consensus 114 ~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v 185 (404)
T 2o1b_A 114 ILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLL-ADGKPVPLNLEP-PHYLPDWSKVDSQIID------KTKLI 185 (404)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHH-TTCEEEEEECCT-TTCCCCGGGSCHHHHH------HEEEE
T ss_pred EcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHH-CCCEEEEeccCc-ccCcCCHHHHHHhhcc------CceEE
Confidence 999999999999999999999999999999999999884 899999999876 5688999999999865 78999
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++++|+||||.++|.+++++|+++|+++|++||+||+|+++.+++ .+.++..+... .+++++++|+||.+|++|
T Consensus 186 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~-----~~~~i~~~s~sK~~g~~G 259 (404)
T 2o1b_A 186 YLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASENG-----KDVAIEIYSLSKGYNMSG 259 (404)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTTH-----HHHEEEEEESTTTTTCGG
T ss_pred EEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCC-----CCCEEEEEecchhccCch
Confidence 999999999999999999999999999999999999999988865 33344443211 257899999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc
Q 046900 285 FRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA 362 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 362 (442)
+|+||+++ ++.+.+.+..... .+..+++.|.++.++++.. .+++++.++.++++++++.+.|++.|+++..+++
T Consensus 260 ~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 335 (404)
T 2o1b_A 260 FRVGFAVG-NKDMIQALKKYQTHTNAGMFGALQDAAIYALNHY---DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAKG 335 (404)
T ss_dssp GCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECCCB
T ss_pred hheEeEec-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCCc
Confidence 99999998 5666666654332 3567889999998888753 4568888999999999999999988998888899
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
|+|+|++++... +..++++.|++++||.+.||+.|+...++++||+++. +++++++++++|++++++
T Consensus 336 g~~~~~~~~~~~------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 336 GIYVWLETPPGY------DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp SSEEEEECCTTC------CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS-CTTHHHHHHHHHHGGGGG
T ss_pred ceEEEEeCCCCC------CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 999999997532 2567888888655999999998865456899999998 888999999999988754
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-48 Score=384.67 Aligned_cols=360 Identities=19% Similarity=0.309 Sum_probs=291.7
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC-CcEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL-NRIV 124 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-~~i~ 124 (442)
+.++|||+.+.+.++ ++.+.+.+.+..... ....|++..|..++|+++|+|+.+.+| .++++ ++|+
T Consensus 36 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~----------~~~~y~~~~g~~~l~~~ia~~~~~~~g--~~~~~~~~v~ 103 (412)
T 2x5d_A 36 GEDIIDLSMGNPDGPTPPHIVEKLCTVAQRE----------DTHGYSTSRGIPRLRRAISHWYRDRYD--VQIDPESEAI 103 (412)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHTC-------------------CTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEE
T ss_pred CCCEEecCCCCCCCCCCHHHHHHHHHHHhCC----------CCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCcCEE
Confidence 457899999988763 466666666654210 134688778999999999999988776 34577 7999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++.+++.+++++||.|+++.|+|+.+...++. .|++++.+|++++++|.+|++.|++.+++ ++++|
T Consensus 104 ~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~~~l~~~i~~------~~~~v 176 (412)
T 2x5d_A 104 VTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVI-AGAQVRSVPLVPGIDFFNELERAIRESIP------KPRMM 176 (412)
T ss_dssp EESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHH-HTCEEEEEECSTTSCHHHHHHHHHHTEES------CCSEE
T ss_pred EcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHH-cCCEEEEeecCCccCCCCCHHHHHHhccc------CceEE
Confidence 999999999999999999999999999999999998884 89999999998765677889999887753 78899
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++++|+||||.+++.+++++|+++|++||++||+||+|+.+.+++..+.++..+... .+++++++|+||.+|++|
T Consensus 177 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-----~~~~i~~~s~sK~~~~~G 251 (412)
T 2x5d_A 177 ILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGA-----KDIAVEFFTLSKSYNMAG 251 (412)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTG-----GGTEEEEEECC-CCSCTT
T ss_pred EECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCc-----cCcEEEEecCccccCCcc
Confidence 999999999999999999999999999999999999999998866545555544221 367899999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc
Q 046900 285 FRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA 362 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 362 (442)
+|+||+++ ++.+.+.+..... .+..+++.|.++.++++... +++++.++.++++++++.+.|++.|+++..+++
T Consensus 252 ~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 327 (412)
T 2x5d_A 252 WRIGFMVG-NPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQ---QCVRDIARQYQQRRDVLVKGLREAGWMVENPKA 327 (412)
T ss_dssp SCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCS---HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSB
T ss_pred cceEEEEc-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCe
Confidence 99999999 5666666654333 36678899999999887642 457888899999999999999888888888899
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
|+|+|++++..... .+..++++.|++++||.+.||+.|+...++++||+++. +++++++++++|++++++..
T Consensus 328 g~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~~ 399 (412)
T 2x5d_A 328 SMYVWAKIPEPYAH---LGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE-NRDRLRQAVRGIKAMFRADG 399 (412)
T ss_dssp SSEEEEECCTTTGG---GCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEEcCCccCC---CCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhcC
Confidence 99999999753210 12567888887756999999998865456899999998 89999999999999988643
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-48 Score=378.52 Aligned_cols=357 Identities=22% Similarity=0.386 Sum_probs=293.1
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCc-EEE
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR-IVV 125 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~-i~~ 125 (442)
.++|+|+.+++.++ ++.+.+.+.+.... ....|++..|..++|+++|+|+.+.+| .++++++ |++
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~~v~~ 92 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALDK-----------GLTHYGPNIGLLELREAIAEKLKKQNG--IEADPKTEIMV 92 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHHT-----------TCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEEE
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCeEEE
Confidence 46799999988763 35555544433211 124688878999999999999988776 4467889 999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++..++.+++++||.|++++|+|+.+...++. .|++++.+|++++++|.+|++.|++.+++ ++++|+
T Consensus 93 ~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~ 165 (389)
T 1gd9_A 93 LLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVIL-AGGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALI 165 (389)
T ss_dssp ESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHH-HTCEEEEEECCGGGTTCCCHHHHHHHCCT------TEEEEE
T ss_pred cCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHH-CCCEEEEeccCCccCCCCCHHHHHHhcCc------CceEEE
Confidence 99999999999999999999999999999999998885 89999999987655688999999998864 788999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.++|.+++++|+++|++||+++|+||+|+++.+++..+.++..+.. ..+++++++|+||.+|++|+
T Consensus 166 ~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~s~sK~~~~~G~ 240 (389)
T 1gd9_A 166 INSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDG-----MFERTITVNGFSKTFAMTGW 240 (389)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT-----CGGGEEEEEESTTTTTCGGG
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccC-----CCCCEEEEecChhhcCCccc
Confidence 9999999999999999999999999999999999999998887653445544321 13678999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCce
Q 046900 286 RVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG 363 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 363 (442)
|+||+++ ++.+.+.+..... .+..+++.|.++.++++.... .+++++.++.++++++++.+.|++.|+++..+++|
T Consensus 241 r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 318 (389)
T 1gd9_A 241 RLGFVAA-PSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGA 318 (389)
T ss_dssp CCEEEEC-CHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBT
T ss_pred ceEEEEE-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCee
Confidence 9999999 4666666654333 356788999999999986432 23688889999999999999999889888888999
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+|+|++++.... +..++++.|++++||.+.||..|+...++++||+++. +++++++++++|++++++.
T Consensus 319 ~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~~~~~ 386 (389)
T 1gd9_A 319 FYIFPRIRDTGL-----TSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLKER 386 (389)
T ss_dssp TEECCBCGGGTC-----CHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEeccCCCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhc
Confidence 999998864100 2568888888555999999998875456899999998 8999999999999998753
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-48 Score=384.31 Aligned_cols=360 Identities=19% Similarity=0.324 Sum_probs=295.3
Q ss_pred CCceeeeeccccc-----ccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 47 PSGVIQMGLAENQ-----VSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 47 ~~~~i~l~~~~n~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
..++|+|+.+.+. .+++.+.+.+.+.... .....|++..|+.++|+++|+++++. + .+++++
T Consensus 53 ~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~----------~~~~~y~~~~g~~~lr~~la~~~~~~-~--~~~~~~ 119 (427)
T 3dyd_A 53 NKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDS----------GKYNGYAPSIGFLSSREEIASYYHCP-E--APLEAK 119 (427)
T ss_dssp TSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHH----------CCSSSCCCTTCCHHHHHHHHHHHCBT-T--BCCCGG
T ss_pred CCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhc----------CcCCCCCCCCCcHHHHHHHHHHHhhc-C--CCCChH
Confidence 4578999998743 2445555555543211 01347888889999999999999754 3 457789
Q ss_pred cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCce
Q 046900 122 RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (442)
+|++|+|+++++.+++.+++++||.|+++.|+|..+...++. .|++++.++++++++|.+|++.+++.+++ ++
T Consensus 120 ~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~ 192 (427)
T 3dyd_A 120 DVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAES-MGIEVKLYNLLPEKSWEIDLKQLEYLIDE------KT 192 (427)
T ss_dssp GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHH-TTCEEEEEEEEGGGTTEECHHHHHSSCCT------TE
T ss_pred HEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHH-cCCEEEEEecccccCCCCCHHHHHHHhcc------CC
Confidence 999999999999999999999999999999999999998884 99999999998767889999999998864 68
Q ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC
Q 046900 202 RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG 281 (442)
Q Consensus 202 ~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g 281 (442)
+++++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+.. ..++++++||||.|+
T Consensus 193 ~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~------~~~vi~~~S~sK~~~ 266 (427)
T 3dyd_A 193 ACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLST------DVPILSCGGLAKRWL 266 (427)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCS------SCCEEEEEESTTTSS
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCC------CCcEEEEeeccccCC
Confidence 89999999999999999999999999999999999999999999988766666655543 356899999999999
Q ss_pred CCCceeEEEeecC------HHHHHHHHHcc-ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 046900 282 LPGFRVGTIYSYN------DKVVTTARRMS-SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA- 353 (442)
Q Consensus 282 ~~G~RiG~i~~~~------~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 353 (442)
++|+|+||+++++ +.+.+.+.... ..+..+++.|.++.++++... .+++++++++++++++.+.+.|++.
T Consensus 267 ~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~L~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~ 344 (427)
T 3dyd_A 267 VPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTP--GEFYHNTLSFLKSNADLCYGALAAIP 344 (427)
T ss_dssp CGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CcCcceEEEEecCcchhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999965 45665555432 246778999999999998432 4567788899999999999999988
Q ss_pred CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHH
Q 046900 354 GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 354 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~ 433 (442)
|+++..|.+|+|+|+.++.... ....+..++++.|++++||.+.||+.|+. ++++||+++. +++++++++++|.++
T Consensus 345 g~~~~~p~~g~~~~~~l~~~~~-~~~~~~~~~~~~l~~~~gV~v~~g~~~~~--~~~iRis~~~-~~e~i~~~l~~l~~~ 420 (427)
T 3dyd_A 345 GLRPVRPSGAMYLMVGIEMEHF-PEFENDVEFTERLVAEQSVHCLPATCFEY--PNFIRVVITV-PEVMMLEACSRIQEF 420 (427)
T ss_dssp TEEEECCSBTTEEEEEECGGGC-TTCSSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEESCS-CHHHHHHHHHHHHHH
T ss_pred CceecCCCeeEEEEEecCHhhc-CCCCCHHHHHHHHHHHCCEEEECCcccCC--CCeEEEEECC-CHHHHHHHHHHHHHH
Confidence 8888889999999998863210 00013578888888666999999998863 6899999986 899999999999999
Q ss_pred HHHHH
Q 046900 434 MQKRE 438 (442)
Q Consensus 434 l~~~~ 438 (442)
+++++
T Consensus 421 l~~~~ 425 (427)
T 3dyd_A 421 CEQHY 425 (427)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 98765
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-48 Score=385.43 Aligned_cols=364 Identities=20% Similarity=0.333 Sum_probs=296.5
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC-CcEEE
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL-NRIVV 125 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-~~i~~ 125 (442)
.++|+|+.+.+.++ ++.+.+.+.+..... .....|++..|..++|+++++++++.++ .++++ ++|++
T Consensus 28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~---------~~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~~i~~ 96 (422)
T 3fvs_A 28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGD---------FMLNQYTKTFGYPPLTKILASFFGELLG--QEIDPLRNVLV 96 (422)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSC---------GGGGSCCCTTCCHHHHHHHHHHHHHHHT--CCCCHHHHEEE
T ss_pred CCceEeCCCCCCCCCCHHHHHHHHHHHhCC---------CccCCCCCCCCCHHHHHHHHHHHHHhhC--CCCCCCCcEEE
Confidence 47899999998764 355555555432110 0135798888999999999999998877 45677 69999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC----C------CCCcCCHHHHHHHHHHHH
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS----S------NNFQITPQALEAAYKEAE 195 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~----~------~~~~~d~~~l~~~l~~~~ 195 (442)
|+|+++++..++.+++++||+|+++.|+|..+...++. .|++++.++++. + .+|.+|++.|++.+++
T Consensus 97 ~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~-- 173 (422)
T 3fvs_A 97 TVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMM-AGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS-- 173 (422)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-TTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT--
T ss_pred ECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHH-cCCEEEEEecccccccccccccccCCCCCHHHHHhhcCC--
Confidence 99999999999999999999999999999999998885 999999999876 2 3678999999988764
Q ss_pred hcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEec
Q 046900 196 SKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275 (442)
Q Consensus 196 ~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S 275 (442)
++++|++++|+||||.+++.+++++|+++|++||+++|+||+|+++.+++..+.++..+... .+++++++|
T Consensus 174 ----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~S 244 (422)
T 3fvs_A 174 ----RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGM-----WERTLTIGS 244 (422)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTT-----GGGEEEEEE
T ss_pred ----CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccc-----cCcEEEEec
Confidence 78999999999999999999999999999999999999999999999887666666555432 478999999
Q ss_pred CcccCCCCCceeEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHHHhcCc----hhHHHHHHHHHHHHHHHHHHHHHH
Q 046900 276 LSKDLGLPGFRVGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLASMLSNK----KFTENYIKTNRERLQKRYQMIIEG 349 (442)
Q Consensus 276 ~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~l~~~ 349 (442)
+||.||++|+|+||+++ ++.+.+.+.... ..+.++++.|.++.+++... ....+++++.++.++++++.+.+.
T Consensus 245 ~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (422)
T 3fvs_A 245 AGKTFSATGWKVGWVLG-PDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRS 323 (422)
T ss_dssp HHHHHTCGGGCCEEEEC-CHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred chhccCCccceEEEEEe-CHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 456666655433 24667889999998888741 011456788899999999999999
Q ss_pred HHhCCCeeecCCceEEEEEecCCccccc-------ChhhHHHHHHHHHHcCcEEEeCCCCCCC-----CCCCEEEEEeec
Q 046900 350 LRSAGIECLKGNAGLFCWMNLSPLLEEQ-------TREGELALWDSMLHEVKLNISPGSSCHC-----SEPGWFRVCFAN 417 (442)
Q Consensus 350 L~~~g~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~l~~~l~~~~gi~v~pg~~f~~-----~~~~~iRls~~~ 417 (442)
|++.|+++..|++|+|+|++++...... ......+++..+++++||.+.||+.|+. ...+++||+++.
T Consensus 324 L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~ 403 (422)
T 3fvs_A 324 LQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK 403 (422)
T ss_dssp HHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC
T ss_pred HHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC
Confidence 9999999889999999999986521100 0001457888888877999999999864 346899999998
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 046900 418 MSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 418 ~~~e~i~~~l~~l~~~l~~ 436 (442)
+++++++++++|++++++
T Consensus 404 -~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 404 -DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp -CHHHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHHHHhh
Confidence 999999999999998753
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-47 Score=371.50 Aligned_cols=345 Identities=15% Similarity=0.212 Sum_probs=286.0
Q ss_pred ceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEec
Q 046900 49 GVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA 127 (442)
Q Consensus 49 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~ 127 (442)
++|||+.++++++ ++.+.+.+.+.. .....|++..|..++|+++|+++.+.+| .++++++|++|+
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~------------~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~i~~t~ 89 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHT------------HSLNIYPKSAFEESLRAAQRGFFKRRFK--IELKENELISTL 89 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTG------------GGGGSCCCTTCCHHHHHHHHHHHHHHHS--CCCCGGGEEEES
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhh------------hhcCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCHHHEEECc
Confidence 8899999998874 366666666543 1346798888999999999999998877 345789999999
Q ss_pred ChHHHHHHHHHhhcCC--CCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 128 GATAANELLTFILADP--GDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 128 G~~~ai~~~~~~l~~~--gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+++++.+++.+++++ ||+|+++.|+|..+...++. .|++++.+|+++++++.+ .+++.+.+ ++++++
T Consensus 90 g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~---~l~~~~~~------~~~~v~ 159 (376)
T 3ezs_A 90 GSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKF-IKAKSLLMPLTKENDFTP---SLNEKELQ------EVDLVI 159 (376)
T ss_dssp SSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHH-TTCEEEEEECCGGGTSCC---CCCHHHHH------HCSEEE
T ss_pred CcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHH-cCCEEEEcccCCCCCcch---hHHhhhcc------CCCEEE
Confidence 9999999999999999 99999999999999999884 999999999987655544 56666665 788999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++ .+.++.......+.+..+++++++|+||.+|++|+
T Consensus 160 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 238 (376)
T 3ezs_A 160 LNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENT-PPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGL 238 (376)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSS-CCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGG
T ss_pred EcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC-CCCCHHHccccccccccCcEEEEecchhccCCccc
Confidence 99999999999999999999999999999999999999998877 34555554331000025889999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCce
Q 046900 286 RVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG 363 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 363 (442)
|+||+++ ++.+.+.+..... .+..+++.|.++.++++..+ ++++.++.++++++.+.+.|+ ++. .+.+|
T Consensus 239 r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~--~~~--~~~~~ 309 (376)
T 3ezs_A 239 RSGFIAG-DSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDR----HAEFFRNIYANNLKLARKIFK--NTL--IYPYS 309 (376)
T ss_dssp CCEEEEE-CHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSH----HHHHHHHHHHHHHHHHHHHST--TCC--CCSBS
T ss_pred eeEEEee-CHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHHhc--CCC--CCCcc
Confidence 9999998 6677777665443 35678899999999998744 467888999999999999998 554 67889
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCC--CCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCH--CSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~--~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+|+|++++. ..++++.|++++||.+.||+.|+ ...++++||+++. +++++++++++|+++++++
T Consensus 310 ~~~~~~~~~---------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l~~~ 375 (376)
T 3ezs_A 310 FYVYLPVQN---------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY-DTPLLEKPLEIIETYRENH 375 (376)
T ss_dssp SEEEEECSC---------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS-CHHHHHHHHHHHHHHHCC-
T ss_pred eEEEEECCC---------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHhc
Confidence 999999872 56888888884599999999997 3456899999987 9999999999999988653
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-48 Score=381.76 Aligned_cols=360 Identities=21% Similarity=0.325 Sum_probs=293.5
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC-CcEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL-NRIV 124 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-~~i~ 124 (442)
..++|+|+.+++.++ ++.+.+.+.+.... .....|++..|..++|+++|+++++.++ ..+++ ++|+
T Consensus 22 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----------~~~~~y~~~~g~~~l~~~la~~~~~~~~--~~~~~~~~i~ 89 (410)
T 3e2y_A 22 DPSVVNLGQGFPDISPPSYVKEELSKAAFI----------DNMNQYTRGFGHPALVKALSCLYGKIYQ--RQIDPNEEIL 89 (410)
T ss_dssp STTSEECSSCCCCSCCCHHHHHHHHHHHTC----------GGGGSCCCTTCCHHHHHHHHHHHHHHHT--SCCCTTTSEE
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHHhC----------ccccCCCCCCChHHHHHHHHHHHHHHhC--CCCCCCCCEE
Confidence 357899999998764 45566655544321 1245788888999999999999998877 45677 7999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC---------CCCCcCCHHHHHHHHHHHH
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS---------SNNFQITPQALEAAYKEAE 195 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~---------~~~~~~d~~~l~~~l~~~~ 195 (442)
+|+|+++++..++.+++++||.|+++.|+|..+...+.. .|++++.++++. +.+|.+|++++++++++
T Consensus 90 ~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~-- 166 (410)
T 3e2y_A 90 VAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRM-AGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS-- 166 (410)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-TTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT--
T ss_pred EeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHH-cCCEEEEEeccccccccccccccCCcCCHHHHHhhcCC--
Confidence 999999999999999999999999999999999999885 899999999863 24577899999988754
Q ss_pred hcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEec
Q 046900 196 SKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275 (442)
Q Consensus 196 ~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S 275 (442)
++++|++++|+||||.+++.+++++|+++|++||+++|+||+|+++.+++..+.++..+... .+++++++|
T Consensus 167 ----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~S 237 (410)
T 3e2y_A 167 ----KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGM-----WERTITIGS 237 (410)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTC-----GGGEEEEEE
T ss_pred ----CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCc-----cCeEEEEec
Confidence 78999999999999999999999999999999999999999999999887666666555332 478999999
Q ss_pred CcccCCCCCceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCc----hhHHHHHHHHHHHHHHHHHHHHHH
Q 046900 276 LSKDLGLPGFRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNK----KFTENYIKTNRERLQKRYQMIIEG 349 (442)
Q Consensus 276 ~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~l~~~ 349 (442)
|||.+|++|+|+||+++ ++.+.+.+..... .+.++++.|.++..++.+. ....+++++.++.++++++.+.+.
T Consensus 238 ~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 316 (410)
T 3e2y_A 238 AGKTFSVTGWKLGWSIG-PAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRL 316 (410)
T ss_dssp HHHHSSCGGGCCEEEEC-CHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCCCceEEEEEE-CHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 5566666554332 4667889999998888631 011446788899999999999999
Q ss_pred HHhCCCeeecCCceEEEEEecCCccccc-----ChhhHHHHHHHHHHcCcEEEeCCCCCCCC-----CCCEEEEEeecCC
Q 046900 350 LRSAGIECLKGNAGLFCWMNLSPLLEEQ-----TREGELALWDSMLHEVKLNISPGSSCHCS-----EPGWFRVCFANMS 419 (442)
Q Consensus 350 L~~~g~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~gi~v~pg~~f~~~-----~~~~iRls~~~~~ 419 (442)
|++.|+++..+++|+|+|++++...... ...+..+++..+++++||.+.||+.|+.. ..+++||+++. +
T Consensus 317 L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~-~ 395 (410)
T 3e2y_A 317 LNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK-K 395 (410)
T ss_dssp HHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC-C
T ss_pred HHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC-C
Confidence 9999999999999999999986532110 01124578888877779999999998653 25899999998 9
Q ss_pred HHHHHHHHHHHHH
Q 046900 420 EQTLEVALKRIHN 432 (442)
Q Consensus 420 ~e~i~~~l~~l~~ 432 (442)
++++++++++|++
T Consensus 396 ~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 396 DSTLDAAEEIFRA 408 (410)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999975
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=373.90 Aligned_cols=348 Identities=19% Similarity=0.287 Sum_probs=287.1
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIV 124 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~ 124 (442)
..++|||+.++++++ ++.+.+.+.+.... .....|++..|..++|+++|+++.+.+| .+++++ +|+
T Consensus 24 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~----------~~~~~y~~~~~~~~l~~~ia~~~~~~~g--~~~~~~~~v~ 91 (376)
T 2dou_A 24 GVGLIDLSIGSTDLPPPEAPLKALAEALND----------PTTYGYCLKSCTLPFLEEAARWYEGRYG--VGLDPRREAL 91 (376)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHTTC----------GGGSSCCCHHHHHHHHHHHHHHHHHHHS--CCCCTTTSEE
T ss_pred CCCEEeccCCCCCCCCCHHHHHHHHHHHhC----------CCcCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCccEE
Confidence 356799999988763 35566666554321 1245688767899999999999988776 345666 999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++.+++++++++||+|+++.|+|+.+...++. .|++++.+|+ +++|.+|++.|++.+++ ++++|
T Consensus 92 ~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~-~g~~~~~~~~--~~~~~~d~~~l~~~l~~------~~~~v 162 (376)
T 2dou_A 92 ALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARV-ASLRTFLIPL--REDGLADLKAVPEGVWR------EAKVL 162 (376)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHH-TTCEEEEECB--CTTSSBCGGGSCHHHHH------HEEEE
T ss_pred EcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHH-cCCEEEEeeC--CCCCCCCHHHHHHhhcc------CceEE
Confidence 999999999999999999999999999999999998884 8999999998 35688999999999865 78999
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++++|+||||.+++.+++++|+++|++||++||+||+|+++.+++. ..++..+... .+++++++||||.+|++|
T Consensus 163 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~-----~~~~i~~~s~sK~~~~~G 236 (376)
T 2dou_A 163 LLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE-APSPLALPGA-----KERVVELFSLSKSYNLAG 236 (376)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC-CCCGGGSTTG-----GGTEEEEEEHHHHHTCGG
T ss_pred EECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCChhhcCCC-----CCcEEEEecchhhcCChh
Confidence 9999999999999999999999999999999999999999887653 3333333211 367899999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA 362 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 362 (442)
+|+||+++ ++.+.+.+...... +..+++.|.++.++++.. .+++++.++.++++++.+.+.|++. +++..+.+
T Consensus 237 ~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~ 311 (376)
T 2dou_A 237 FRLGFALG-SEEALARLERVKGVIDFNQYAGVLRMGVEALKTP---KEVVRGYARVYRERALGMAEALKGV-LSLLPPRA 311 (376)
T ss_dssp GCCEEEEE-CHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHHHTTT-SEECCCCB
T ss_pred heeEEEec-CHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHh-cCccCCCe
Confidence 99999998 56666666543332 456889999999999863 4567888999999999999999988 88888889
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
|+|+|++++... +..++++.|+++ ||.+.||+.|+...++++||+++. +++++++++++|++++
T Consensus 312 ~~~~~~~~~~~~------~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~-~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 312 TMYLWGRLPEGV------DDLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVR-PLEELLEAAKRIREAL 375 (376)
T ss_dssp SSEEEEECCTTC------CHHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred eEEEEEECCCCC------CHHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 999999997532 256788899888 999999998865456899999987 8999999999998764
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=375.75 Aligned_cols=351 Identities=23% Similarity=0.394 Sum_probs=284.1
Q ss_pred CCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|||+.++++++. +.+.+.+.+.... ....|++..|..++|+++++++++.++ +++++++|++
T Consensus 30 g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-----------~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~v~~ 96 (391)
T 3h14_A 30 GRRIIHMEVGQPGTGAPRGAVEALAKSLET-----------DALGYTVALGLPALRQRIARLYGEWYG--VDLDPGRVVI 96 (391)
T ss_dssp TCCCEECCCSSCSSCSCHHHHHHHHHHHC---------------------CCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCChHHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 4578999999988753 5555555543211 135788888999999999999998877 4578899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++.+++.+++++||+|+++.|+|..+...++. .|++++.++++++++|.+|++.|++. ++++|+
T Consensus 97 t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~---------~~~~v~ 166 (391)
T 3h14_A 97 TPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRA-LGLVPVDLPTAPENRLQPVPADFAGL---------DLAGLM 166 (391)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHH-TTCEEEEEECCGGGTTSCCHHHHTTS---------CCSEEE
T ss_pred ecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHH-cCCEEEEeecCcccCCCCCHHHHHhc---------CCeEEE
Confidence 99999999999999999999999999999999998885 99999999998777889999998864 578999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.+++.+++++|+++|++||+++|+||+|+++.+++. ..+...+ .+++++++|+||.+|++|+
T Consensus 167 i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~--------~~~~i~~~s~sK~~g~~G~ 237 (391)
T 3h14_A 167 VASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAK-AVTALEL--------TDECYVINSFSKYFSMTGW 237 (391)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCGGGT--------CSSSEEEEESSSTTCCTTS
T ss_pred ECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCC-CcChhhc--------CCCEEEEEechhccCCccc
Confidence 999999999999999999999999999999999999999888764 2333222 3678999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCee-ecCCc
Q 046900 286 RVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIEC-LKGNA 362 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~ 362 (442)
|+||++++ +.+.+.+..... .+..+++.|.++.+.+.. .+++++.++.++++++.+.+.|++.++.. ..+.+
T Consensus 238 r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 312 (391)
T 3h14_A 238 RVGWMVVP-EDQVRVVERIAQNMFICAPHASQVAALAALDC----DAELQANLDVYKANRKLMLERLPKAGFTRIAPPDG 312 (391)
T ss_dssp CCEEEECC-GGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCB
T ss_pred eeEEEEeC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHhCC----hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCe
Confidence 99999995 455555554333 246788899988888873 35678889999999999999999886654 57888
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC-CCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC-SEPGWFRVCFANMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~-~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
++++|++++.... +..++++.|++++||.+.||+.|+. ..++++||+++. +++++++++++|+++++++...
T Consensus 313 ~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~~~~~~~~ 385 (391)
T 3h14_A 313 AFYVYADVSDLTD-----DSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR-ATADIEEGLDRLEAFMQARGEG 385 (391)
T ss_dssp TTEEEEECTTTCS-----CHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-CHHHHHHHHHHHHHHHHHC---
T ss_pred eEEEEEecCccCC-----CHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHhccc
Confidence 8999999875211 3678888888877999999999976 346899999998 8999999999999999876543
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=377.95 Aligned_cols=361 Identities=16% Similarity=0.224 Sum_probs=291.4
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|+|+.+++.++ ++.+.+.+.+.... ....|++. ..++|+++++++.+.+| +++++++|++
T Consensus 30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~v~~ 94 (399)
T 1c7n_A 30 GNEVVPLSVADMEFKNPPELIEGLKKYLDE-----------TVLGYTGP--TEEYKKTVKKWMKDRHQ--WDIQTDWIIN 94 (399)
T ss_dssp CTTCCCCCSSSCSSCCCHHHHHHHHHHHHH-----------CCCSSBCC--CHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCCceeeeecCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCC--cHHHHHHHHHHHHHHhC--CCCChhhEEE
Confidence 357899999988664 45555555443210 12457664 79999999999988766 4467889999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC-CCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD-SSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
|+|+++++.+++.+++++||.|+++.|+|+.+...+.. .|++++.+|++ ++++|.+|++.|++.+++ .++++|
T Consensus 95 t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-----~~~~~v 168 (399)
T 1c7n_A 95 TAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKN-QERKIIECELLEKDGYYTIDFQKLEKLSKD-----KNNKAL 168 (399)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHT-TTCEEEECCCEEETTEEECCHHHHHHHHTC-----TTEEEE
T ss_pred cCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHH-cCCEEEecccccCCCCEEEcHHHHHHHhcc-----CCCcEE
Confidence 99999999999999999999999999999999998884 89999999986 334578999999999862 278999
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++++|+||||.++|.+++++|+++|++||+++|+||+|+++.+++..+.++..+..+ ..+++++++|+||.+|++|
T Consensus 169 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G 244 (399)
T 1c7n_A 169 LFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQ----LADKTITFTAPSKTFNIAG 244 (399)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHH----HHTTEEEEECSHHHHTCGG
T ss_pred EEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCcc----ccCcEEEEEeChhhccccc
Confidence 999999999999999999999999999999999999999988876545555444221 0267899999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHcccc---CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeec
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSF---TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS-A-GIECLK 359 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~ 359 (442)
+|+||++++++.+.+.++..... ...+++.|.++.++++.. .+++++.++.++++++++.+.|++ . |+++..
T Consensus 245 ~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 321 (399)
T 1c7n_A 245 MGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC---GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPL 321 (399)
T ss_dssp GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCC
T ss_pred hheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEec
Confidence 99999999666666666543332 256888999888888642 456788899999999999999988 5 888888
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
+.+++++|++++.... +..++++.|++++||.+.||+.|+...++++||+++. +++++++++++|++++++.++
T Consensus 322 ~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 322 IEGTYLQWIDFRALKM-----DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp CSBSSEEEEECGGGCC-----CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHHC-
T ss_pred CCceEEEEEEcccCCC-----CHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc-CHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999874200 2567888887666999999998875456899999997 688999999999999998776
Q ss_pred hc
Q 046900 440 RR 441 (442)
Q Consensus 440 ~~ 441 (442)
|.
T Consensus 396 ~~ 397 (399)
T 1c7n_A 396 RH 397 (399)
T ss_dssp --
T ss_pred cC
Confidence 54
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-47 Score=374.91 Aligned_cols=348 Identities=19% Similarity=0.383 Sum_probs=281.7
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
..++|||+.+.+.++ ++.+.+.+.+...... ......|++..|..++|+++++++.+.+| +++++++|++
T Consensus 34 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-------~~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~i~~ 104 (398)
T 3ele_A 34 KENVYDFSIGNPSIPAPQIVNDTIKELVTDYD-------SVALHGYTSAQGDVETRAAIAEFLNNTHG--THFNADNLYM 104 (398)
T ss_dssp GGGCEECCSCCCCSCCCHHHHHHHHHHHHHSC-------HHHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCCeEEeecCCCCCCCCHHHHHHHHHHHhcCC-------ccccCCcCCCCCcHHHHHHHHHHHHHHhC--CCCChHHEEE
Confidence 357899999876553 3555555444321100 00145788888999999999999998877 4578999999
Q ss_pred ecChHHHHHHHHHhhcCCC-CeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 126 TAGATAANELLTFILADPG-DALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~g-d~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
|+|+++++..++.+++++| |.|+++.|+|..+...++. .|++++.+|++++ +|.+|+++|++++++ +++++
T Consensus 105 ~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~-~g~~~~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v 176 (398)
T 3ele_A 105 TMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNA-AGARLVEVPADTE-HFQIDFDALEERINA------HTRGV 176 (398)
T ss_dssp ESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHH-TTCEEEEECCCTT-TSSCCHHHHHHTCCT------TEEEE
T ss_pred ccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHH-cCCEEEEEecCCc-CCcCCHHHHHHHhCc------CCCEE
Confidence 9999999999999999999 9999999999999999885 9999999999754 688999999998864 78999
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHh------cCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcc
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATR------KNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSK 278 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~------~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK 278 (442)
++++|+||||.+++.+++++|+++|++ ||++||+||+|+++.+++........ ..+++++++|+||
T Consensus 177 ~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~--------~~~~~i~~~s~sK 248 (398)
T 3ele_A 177 IINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTK--------YYDNTLVCYSYSK 248 (398)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGG--------TCSSEEEEEESTT
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHh--------hcCCeEEEEehhh
Confidence 999999999999999999999999999 99999999999999887644333221 1478999999999
Q ss_pred cCCCCCceeEEEeecCHH-----HHHHHHH---ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 046900 279 DLGLPGFRVGTIYSYNDK-----VVTTARR---MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGL 350 (442)
Q Consensus 279 ~~g~~G~RiG~i~~~~~~-----~~~~~~~---~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 350 (442)
.+|++|+|+||++++++. +...+.. .......+.+.|.++..++++.. .++.++++++++.+.|
T Consensus 249 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------~~~~~~~~~~~l~~~L 320 (398)
T 3ele_A 249 SLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG--------DINAYKENRDLLYEGL 320 (398)
T ss_dssp TSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC--------CHHHHHHHHHHHHHHH
T ss_pred cCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH--------HHHHHHHHHHHHHHHH
Confidence 999999999999996652 3333322 22234567788998888887654 2456778888899999
Q ss_pred HhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHH
Q 046900 351 RSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRI 430 (442)
Q Consensus 351 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l 430 (442)
++.|+++..+.+++|+|++++.. +..++++.|.+ +||.+.||+.|+. ++++||+++. +++++++++++|
T Consensus 321 ~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~-~gi~v~~g~~~~~--~~~iRis~~~-~~e~i~~~l~~l 389 (398)
T 3ele_A 321 TRIGYHCFKPDGAFYMFVKALED-------DSNAFCEKAKE-EDVLIVAADGFGC--PGWVRISYCV-DREMIKHSMPAF 389 (398)
T ss_dssp HHHTCCEECCSBSSEEEEECSSS-------CHHHHHHHHHT-TTEECEESGGGTC--TTEEEEECCS-CHHHHHHHHHHH
T ss_pred HHcCCeecCCCeeEEEEEEcCCC-------CHHHHHHHHHH-CCEEEeCccccCC--CCeEEEEecC-CHHHHHHHHHHH
Confidence 88899999999999999998753 25677777755 5999999999864 5799999986 999999999999
Q ss_pred HHHHHHHH
Q 046900 431 HNFMQKRE 438 (442)
Q Consensus 431 ~~~l~~~~ 438 (442)
++++++++
T Consensus 390 ~~~l~~~~ 397 (398)
T 3ele_A 390 EKIYKKYN 397 (398)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99998764
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-47 Score=373.84 Aligned_cols=350 Identities=22% Similarity=0.311 Sum_probs=287.2
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEEE
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIVV 125 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~~ 125 (442)
.++|+|+.+.+.++ ++.+.+.+.+.... ....|++..|..++|+++++++.+.+| .+++++ +|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~~~v~~ 96 (386)
T 1u08_A 30 HQAINLSQGFPDFDGPRYLQERLAHHVAQ-----------GANQYAPMTGVQALREAIAQKTERLYG--YQPDADSDITV 96 (386)
T ss_dssp TTCEECCCSSCSSCCCHHHHHHHHHHHHT-----------TCCSCCCTTCCHHHHHHHHHHHHHHHS--CCCCTTTTEEE
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHHh-----------hccCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCCEEE
Confidence 36789999887653 35555555443211 134688878899999999999988776 446788 9999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++..++.+++++||.|+++.|+|+.+...++. .|++++.+|++.+ +|.+|++.|++.+.+ ++++|+
T Consensus 97 ~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v~ 168 (386)
T 1u08_A 97 TAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIAL-SGGIVKRMALQPP-HFRVDWQEFAALLSE------RTRLVI 168 (386)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-TTCEEEEEECCTT-TCCCCHHHHHHHCCT------TEEEEE
T ss_pred cCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHH-cCCEEEEeecCcc-cCcCCHHHHHHhhcc------cCEEEE
Confidence 99999999999999999999999999999999998884 8999999998754 578999999998853 789999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.++|.+++++|+++|++||++||+||+|+++.+++..+.++..+... .+++++++|+||.+|++|+
T Consensus 169 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-----~~~~i~~~s~sK~~~~~G~ 243 (386)
T 1u08_A 169 LNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQL-----RERAVAVSSFGKTYHMTGW 243 (386)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHH-----HTTEEEEEEHHHHTTCGGG
T ss_pred EeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCc-----cCcEEEEecchhhcCCccc
Confidence 99999999999999999999999999999999999999998876555555444321 2678999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCce
Q 046900 286 RVGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG 363 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 363 (442)
|+||+++ ++.+.+.++... ..+..+++.|.++..+++.. .+++++.++.++++++++.+.|++.|+++..+++|
T Consensus 244 r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 319 (386)
T 1u08_A 244 KVGYCVA-PAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQKRDILVNALNESRLEILPCEGT 319 (386)
T ss_dssp CCEEEEC-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBS
T ss_pred ceEEEEc-CHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCce
Confidence 9999999 466666665433 23567888999888888753 34678889999999999999999889998888889
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC--CCCCEEEEEeecCCHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC--SEPGWFRVCFANMSEQTLEVALKRIHN 432 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~--~~~~~iRls~~~~~~e~i~~~l~~l~~ 432 (442)
+|+|++++.... .+..++++.|++++||.+.||+.|+. ..++++||+++. +++++++++++|++
T Consensus 320 ~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 320 YFLLVDYSAVST----LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ 385 (386)
T ss_dssp SEEEEECTTTCC----SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred EEEEEecCCCCC----CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC-CHHHHHHHHHHHhh
Confidence 999999875310 02567888888666999999998864 246799999997 89999999999864
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=375.24 Aligned_cols=348 Identities=20% Similarity=0.257 Sum_probs=292.3
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|||+.++++++ ++.+.+.+.+.... ....|++ .| .++|+++++++++.++ ..+++++|++
T Consensus 22 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~y~~-~~-~~lr~~la~~~~~~~~--~~~~~~~i~~ 86 (377)
T 3fdb_A 22 GQGVLPLWVAESDFSTCPAVLQAITDAVQR-----------EAFGYQP-DG-SLLSQATAEFYADRYG--YQARPEWIFP 86 (377)
T ss_dssp CTTSEECCSSCCCSCCCHHHHHHHHHHHHT-----------TCCSSCC-SS-CCHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCCeeeecccCCCCCCCHHHHHHHHHHHHc-----------CCCCCCC-CC-HHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 567899999998774 35555555443211 1356888 77 8999999999998877 4577899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++..++.+++++||+|+++.|+|..+...++. .|++++.+|++++ +|++.|++.+++ ++++++
T Consensus 87 t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~-~g~~~~~~~~~~~----~d~~~l~~~l~~------~~~~v~ 155 (377)
T 3fdb_A 87 IPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSA-TQREGIFIDATGG----INLHDVEKGFQA------GARSIL 155 (377)
T ss_dssp ESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHH-HTCCEEEEECTTS----CCHHHHHHHHHT------TCCEEE
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHH-cCCEEEEccCCCC----CCHHHHHHHhcc------CCCEEE
Confidence 99999999999999999999999999999999998885 8999999998763 899999999975 678999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC-CCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS-SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~-~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
+++|+||||.+++.+++++|+++|++||+++|+||+|+++.+++ ..+.++..+... +++++++|+||.+|++|
T Consensus 156 i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~------~~~i~~~s~sK~~g~~G 229 (377)
T 3fdb_A 156 LCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAA------SVCITITAPSKAWNIAG 229 (377)
T ss_dssp EESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHH------HHEEEEECSTTTTTCGG
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCC------CcEEEEEeChHhccCcc
Confidence 99999999999999999999999999999999999999998877 445555444332 67899999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeecC
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA--GIECLKG 360 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~ 360 (442)
+|+||++++++.+.+.++..... +..+++.|.++.+++... .+++++.++.++++++++.+.|++. |+++..+
T Consensus 230 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 306 (377)
T 3fdb_A 230 LKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYG---TDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPM 306 (377)
T ss_dssp GCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCC
T ss_pred hhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecC
Confidence 99999988677777777665432 567889999988888743 4567888999999999999999985 8999999
Q ss_pred CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 361 NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 361 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
++++++|++++.... ..+++..+++++||.+.||+.|+...++++||+++. +++++++++++|++++++
T Consensus 307 ~~~~~~~~~~~~~~~------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~-~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 307 QATYLMWIDFRDTTI------EGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT-SREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp SBCSEEEEECTTSCC------CSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHTT
T ss_pred CeeEEEEEECcccCC------CHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhh
Confidence 999999999986321 135677777777999999999986667899999998 899999999999998764
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-47 Score=377.79 Aligned_cols=328 Identities=16% Similarity=0.263 Sum_probs=268.8
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccC-------CCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhH
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFD-------LNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDL 161 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-------~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~ 161 (442)
.+|++..|+++||+++++++.+.+| ...+ +++|++|+|+++++.+++.+++++||.|++++|+|+.+...+
T Consensus 72 ~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~ 149 (425)
T 2r2n_A 72 LQYSPSAGIPELLSWLKQLQIKLHN--PPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSL 149 (425)
T ss_dssp TSCCCTTCCHHHHHHHHHHHHHHHC--CTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHhcC--CCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHH
Confidence 5799999999999999999998877 3332 369999999999999999999999999999999999999998
Q ss_pred hhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHh------cCCceeEEEE-eCCCCCCCcCCCHHHHHHHHHHHHhcCc
Q 046900 162 RWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAES------KDMRVRGVLI-TNPSNPLGATIQRSVLEELLDFATRKNI 234 (442)
Q Consensus 162 ~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~------~~~~~~~v~l-~~P~NPtG~~~~~~~l~~l~~~~~~~~~ 234 (442)
+. .|++++.+|++++ .+|++.|++.++++.. .+.++++|++ ++||||||.+++.+++++|+++|++||+
T Consensus 150 ~~-~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~ 225 (425)
T 2r2n_A 150 HP-LGCNIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDF 225 (425)
T ss_dssp GG-GTCEEEEECEETT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred HH-cCCEEEEeCcCCC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCC
Confidence 84 8999999998753 3899999999863210 0135787766 5899999999999999999999999999
Q ss_pred EEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc--cCCCcH
Q 046900 235 HLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS--FTLISS 312 (442)
Q Consensus 235 ~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~--~~~~s~ 312 (442)
+||+||+|+++.|++..+.++.++.. .+++++++||||.++ +|+|+||++++ +.+.+.+..... .+..++
T Consensus 226 ~li~De~~~~~~~~g~~~~~~~~~~~------~~~~i~~~s~SK~~~-~GlRiG~~~~~-~~l~~~l~~~~~~~~~~~~~ 297 (425)
T 2r2n_A 226 LIIEDDPYYFLQFNKFRVPTFLSMDV------DGRVIRADSFSKIIS-SGLRIGFLTGP-KPLIERVILHIQVSTLHPST 297 (425)
T ss_dssp EEEEECTTGGGBSSSSCCCCTGGGCT------TSCEEEEEESTTTTC-STTCCEEEEEE-HHHHHHHHHHHHTTTCSSCH
T ss_pred EEEEECCcccccCCCCCCCCccccCC------CCCEEEEccchhhcc-CccceEEEecC-HHHHHHHHHHHHHhcCCCCH
Confidence 99999999999887765666665533 378999999999998 99999999995 556666554332 366789
Q ss_pred HHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHHHHHHHHHhC--CC-eeecCCceEEEEEecCCcccccChhhHHH-HH
Q 046900 313 QTQYLLASMLSNK--KFTENYIKTNRERLQKRYQMIIEGLRSA--GI-ECLKGNAGLFCWMNLSPLLEEQTREGELA-LW 386 (442)
Q Consensus 313 ~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-l~ 386 (442)
+.|.++.++++.. +...++++++++.++++++.+.+.|++. |+ .+..|.+|+|+|++++.... ..+ +.
T Consensus 298 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~------~~~~~~ 371 (425)
T 2r2n_A 298 FNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIND------VKELIE 371 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSC------CHHHHH
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCC------HHHHHH
Confidence 9999999998862 1235778899999999999999999884 66 46678999999999986422 234 45
Q ss_pred HHHHHcCcEEEeCCCCCCCC---CCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 387 DSMLHEVKLNISPGSSCHCS---EPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 387 ~~l~~~~gi~v~pg~~f~~~---~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+.|. ++||.+.||+.|+.. ..+++||+++..+++++++++++|++++++.
T Consensus 372 ~~l~-~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 372 EKAV-KMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp THHH-HTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 5554 459999999998753 2579999998448999999999999998653
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-47 Score=371.35 Aligned_cols=355 Identities=18% Similarity=0.357 Sum_probs=289.7
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|+|+.+++.++ ++.+.+.+.+.... ....|++..|..++|+++++++++.+| .++++++|++
T Consensus 29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~v~~ 95 (388)
T 1j32_A 29 GIDVCSFSAGEPDFNTPKHIVEAAKAALEQ-----------GKTRYGPAAGEPRLREAIAQKLQRDNG--LCYGADNILV 95 (388)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHT-----------TCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEEE
Confidence 456799999988663 34455444433210 124688888999999999999998776 4467889999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++.+++++++++||+|++++|+|+.+...++. .|++++.++++++++|.+|++.|++.+++ ++++|+
T Consensus 96 ~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~ 168 (388)
T 1j32_A 96 TNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKL-AEGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLV 168 (388)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHH-TTCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEEE
T ss_pred cCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH-cCCEEEEecCCcccCCCCCHHHHHHhcCc------CceEEE
Confidence 99999999999999999999999999999999998885 89999999987655688999999998864 789999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.++|.+++++|+++|+++|+++|+||+|+++.+++..+.++..+..+. .+++++++|+||.+|++|+
T Consensus 169 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~sK~~~~~G~ 244 (388)
T 1j32_A 169 FNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEA----YERSVVCSGFAKTYAMTGW 244 (388)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHH----HHTEEEEEESTTTTTCTTT
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccc----cCCEEEEeechhccCCccc
Confidence 999999999999999999999999999999999999999988765555554442210 2568999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCc
Q 046900 286 RVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNA 362 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 362 (442)
|+||+++ ++.+.+.+..... .+..+++.|.++.++++.. .+++++.++.++++++++.+.|++. |+++..+.+
T Consensus 245 r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 320 (388)
T 1j32_A 245 RVGFLAG-PVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDG 320 (388)
T ss_dssp CCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCB
T ss_pred ceEEEEe-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCe
Confidence 9999998 5666666654332 3567788998888888743 3457788899999999999999987 888888899
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
++++|++++... .+..++++.|++++||.+.||..|+. ++++||+++. +++++++++++|++++++.
T Consensus 321 ~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~-~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 321 AFYMFPSIAKTG-----RSSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYAT-DLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp TTEECCBCGGGT-----CCHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCCC-----CCHHHHHHHHHHhCCEEEeChhhhCC--CCcEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence 999999886410 02567888888745999999998864 5789999997 8999999999999998764
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-47 Score=378.77 Aligned_cols=363 Identities=19% Similarity=0.275 Sum_probs=292.9
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEEE
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIVV 125 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~~ 125 (442)
.++|+|+.+.+.++ ++.+.+.+.+...... .....|++..|..++|+++++++.+.+| .+++++ +|++
T Consensus 37 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--------~~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~~~v~~ 106 (429)
T 1yiz_A 37 YKPLNLGQGFPDYHAPKYALNALAAAANSPD--------PLANQYTRGFGHPRLVQALSKLYSQLVD--RTINPMTEVLV 106 (429)
T ss_dssp HCCEECCSSSCSSCCCHHHHHHHHHHHTCSC--------GGGGSCCCSSCCHHHHHHHHHHHHHHHT--SCCCTTTSEEE
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhccc--------cCccCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCcCCEEE
Confidence 46799999987653 3555555544321100 1245788888899999999999988776 446788 9999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCC--------CCcCCHHHHHHHHHHHHhc
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSN--------NFQITPQALEAAYKEAESK 197 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~--------~~~~d~~~l~~~l~~~~~~ 197 (442)
|+|+++++..++++++++||.|+++.|+|+.+...++. .|++++.+|++.++ +|.+|++.|++.+++
T Consensus 107 ~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~---- 181 (429)
T 1yiz_A 107 TVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKA-AGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE---- 181 (429)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-TTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCT----
T ss_pred ecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHH-cCCEEEEEeCCcccccccccccCcccCHHHHHHHhcc----
Confidence 99999999999999999999999999999999998884 89999999987653 578999999998853
Q ss_pred CCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCc
Q 046900 198 DMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLS 277 (442)
Q Consensus 198 ~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~S 277 (442)
++++|++++|+||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..+.. ..++++++.|+|
T Consensus 182 --~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~s~s 254 (429)
T 1yiz_A 182 --KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPG-----MWERTITIGSAG 254 (429)
T ss_dssp --TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTT-----TGGGEEEEEEHH
T ss_pred --CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccC-----CcCceEEEecch
Confidence 7899999999999999999999999999999999999999999999887655555544421 136789999999
Q ss_pred ccCCCCCceeEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHHHHHHHHHH
Q 046900 278 KDLGLPGFRVGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLASMLSN-----KKFTENYIKTNRERLQKRYQMIIEGL 350 (442)
Q Consensus 278 K~~g~~G~RiG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~l~~~L 350 (442)
|.+|++|+|+||+++ ++.+.+.+.... ..+..+++.|.++.++++. ..+ .+++++.++.++++++.+.+.|
T Consensus 255 K~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L 332 (429)
T 1yiz_A 255 KTFSLTGWKIGWAYG-PEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSP-ECYFNSISGELMAKRDYMASFL 332 (429)
T ss_dssp HHHTCGGGCCEEEES-CHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCcceEEEEe-CHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccch-HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 466666665432 2456788999998888876 322 4567888999999999999999
Q ss_pred HhCCCeeecCCceEEEEEecCCccc------ccChhhHHHHHHHHHHcCcEEEeCCCCCCCC-----CCCEEEEEeecCC
Q 046900 351 RSAGIECLKGNAGLFCWMNLSPLLE------EQTREGELALWDSMLHEVKLNISPGSSCHCS-----EPGWFRVCFANMS 419 (442)
Q Consensus 351 ~~~g~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~-----~~~~iRls~~~~~ 419 (442)
++.|+++..+.+|+|+|++++.... .....+..++++.|++++||.+.||+.|+.. .++++||+++. +
T Consensus 333 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~-~ 411 (429)
T 1yiz_A 333 AEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK-K 411 (429)
T ss_dssp HHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCS-C
T ss_pred HhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecC-C
Confidence 9889998888899999999976310 0000135678888886669999999888642 25799999997 8
Q ss_pred HHHHHHHHHHHHHHHH
Q 046900 420 EQTLEVALKRIHNFMQ 435 (442)
Q Consensus 420 ~e~i~~~l~~l~~~l~ 435 (442)
++++++++++|+++++
T Consensus 412 ~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 412 DENLQKAAEILRKWKG 427 (429)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999998764
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-47 Score=375.38 Aligned_cols=364 Identities=19% Similarity=0.350 Sum_probs=287.8
Q ss_pred CCCceeeeecccc----cc-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHh----CCCC
Q 046900 46 NPSGVIQMGLAEN----QV-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIR----GGRA 116 (442)
Q Consensus 46 ~~~~~i~l~~~~n----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~----~~~~ 116 (442)
++.++|+|+.+.+ .+ +++.+.+.+.+.... .....|++..|..++|+++|+++++.+ ..++
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~----------~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~ 100 (416)
T 1bw0_A 31 SPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDS----------QECNGYFPTVGSPEAREAVATWWRNSFVHKEELKS 100 (416)
T ss_dssp SCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHT----------TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGG
T ss_pred cCCCeEEecCcCCCcccCCCCCHHHHHHHHHHhhC----------CccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCC
Confidence 3467899999864 22 345555555443211 013568887899999999999998422 1124
Q ss_pred ccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHh
Q 046900 117 KFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAES 196 (442)
Q Consensus 117 ~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~ 196 (442)
++++++|++|+|+++++.+++.+++++||.|+++.|+|+.+...++. .|++++.++++++++|.+|++.|++.+++
T Consensus 101 ~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~l~~--- 176 (416)
T 1bw0_A 101 TIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKA-YGIGMHFYNCRPENDWEADLDEIRRLKDD--- 176 (416)
T ss_dssp GCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHH-TTCEEEEEEEEGGGTTEECHHHHHHHCCT---
T ss_pred CCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHH-cCcEEEEeecCcccCCCCCHHHHHHHhcc---
Confidence 56789999999999999999999999999999999999999998884 89999999987655688999999998864
Q ss_pred cCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC----CcccHHHHHhhhcCCCCCcEEE
Q 046900 197 KDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS----EFVSIAEILEARQYKDSERVHI 272 (442)
Q Consensus 197 ~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~----~~~s~~~~~~~~~~~~~~~vi~ 272 (442)
+++++++++|+||||.+++.+++++|+++|++||++||+||+|.++.+++. .+.++..+.. .+++++
T Consensus 177 ---~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~------~~~~i~ 247 (416)
T 1bw0_A 177 ---KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFET------TVPRVI 247 (416)
T ss_dssp ---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCC------SCCEEE
T ss_pred ---CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccC------CCcEEE
Confidence 678999999999999999999999999999999999999999999888765 3444433322 356899
Q ss_pred EecCcccCCCCCceeEEEeecCH-----HHHHHHHHcc-ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Q 046900 273 VYSLSKDLGLPGFRVGTIYSYND-----KVVTTARRMS-SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMI 346 (442)
Q Consensus 273 ~~S~SK~~g~~G~RiG~i~~~~~-----~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 346 (442)
++|+||.|+++|+|+||++++++ .+...++... ..+..+++.|.++.++++... ..++++.++.++++++++
T Consensus 248 ~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l 325 (416)
T 1bw0_A 248 LGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLDQIVAKIEESAMYL 325 (416)
T ss_dssp EEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHH
T ss_pred EecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHH
Confidence 99999999899999999998664 2332333322 245678999999999988532 456778888999999999
Q ss_pred HHHHHhC-CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHH
Q 046900 347 IEGLRSA-GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEV 425 (442)
Q Consensus 347 ~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~ 425 (442)
.+.|++. |+.+..+.+|+|+|++++...- ....+..+++..|++++||.+.||+.|+. ++++||+++. +++++++
T Consensus 326 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~iRis~~~-~~e~l~~ 401 (416)
T 1bw0_A 326 YNHIGECIGLAPTMPRGAMYLMSRIDLEKY-RDIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTTR-PVEVYRE 401 (416)
T ss_dssp HHHHTTSTTEEECCCCBTTEEEEEECGGGB-SSCCSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCS-CHHHHHH
T ss_pred HHHHHhCCCCcccCCCeeEEEEEeCCHHHc-CCCCCHHHHHHHHHHHCCEEEecccccCC--CCeEEEEecC-CHHHHHH
Confidence 9999987 8888778889999998863100 00013567888887555999999998863 5799999986 8999999
Q ss_pred HHHHHHHHHHHHH
Q 046900 426 ALKRIHNFMQKRE 438 (442)
Q Consensus 426 ~l~~l~~~l~~~~ 438 (442)
++++|.+++++++
T Consensus 402 ~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 402 AVERIKAFCQRHA 414 (416)
T ss_dssp HHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998754
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-46 Score=371.97 Aligned_cols=364 Identities=18% Similarity=0.306 Sum_probs=294.0
Q ss_pred Cceeeeeccccc---ccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCc-cCCCcE
Q 046900 48 SGVIQMGLAENQ---VSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAK-FDLNRI 123 (442)
Q Consensus 48 ~~~i~l~~~~n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~~~i 123 (442)
+++|||+.+.+. ++++.+.+.+.+...... .....|++..|..++|+++|+++.+++| .+ +++++|
T Consensus 43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~--------~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~~v 112 (425)
T 1vp4_A 43 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEY--------HYTLQYSTTEGDPVLKQQILKLLERMYG--ITGLDEDNL 112 (425)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSH--------HHHTSCCCTTCCHHHHHHHHHHHHHHHC--CCSCCGGGE
T ss_pred CCceeCCCCCCCcccCCHHHHHHHHHHHHhhcc--------hhhcCCCCCCCCHHHHHHHHHHHHhccC--CCCCCcccE
Confidence 468999887542 255666655544321100 0135688888999999999999977655 44 568899
Q ss_pred EEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhc--CCce
Q 046900 124 VVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESK--DMRV 201 (442)
Q Consensus 124 ~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~--~~~~ 201 (442)
++|+|+++++.+++.+++++||.|+++.|+|..+...+.. .|++++.+|++++ .+|++.|++.+++...+ +.++
T Consensus 113 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~ 188 (425)
T 1vp4_A 113 IFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQ-YLANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQV 188 (425)
T ss_dssp EEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHT-TTCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGGGE
T ss_pred EEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHH-cCCEEEEeccCCC---CCCHHHHHHHHHhhhhcccCCCc
Confidence 9999999999999999999999999999999999998884 8999999998764 28999999999753211 1267
Q ss_pred eEE-EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccC
Q 046900 202 RGV-LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDL 280 (442)
Q Consensus 202 ~~v-~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~ 280 (442)
++| ++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++..+.++..+.. .+++++++||||.+
T Consensus 189 ~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~------~~~~i~~~s~sK~~ 262 (425)
T 1vp4_A 189 KFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGG------PERVVLLNTFSKVL 262 (425)
T ss_dssp EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHC------TTTEEEEEESTTTT
T ss_pred eEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCC------CCCEEEEecccccc
Confidence 887 57899999999999999999999999999999999999999887766667777653 36889999999999
Q ss_pred CCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Q 046900 281 GLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA----- 353 (442)
Q Consensus 281 g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----- 353 (442)
| +|+|+||++++ +.+.+.+...... +..+++.|.++.++++...+ ++++++.++.++++++.+.+.|++.
T Consensus 263 ~-~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 339 (425)
T 1vp4_A 263 A-PGLRIGMVAGS-KEFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVMLNALEEYFSDIP 339 (425)
T ss_dssp C-GGGCEEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHHHHHHHHHHHHHHHHHHSTTST
T ss_pred c-cccceEEEeeC-HHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9 99999999995 6666666543322 45688999999999986533 5678888999999999999999875
Q ss_pred CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC--CCCEEEEEeecCCHHHHHHHHHHHH
Q 046900 354 GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS--EPGWFRVCFANMSEQTLEVALKRIH 431 (442)
Q Consensus 354 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~--~~~~iRls~~~~~~e~i~~~l~~l~ 431 (442)
|+++..+.+|+|+|++++...+ ..++++.|+++ ||.+.||+.|+.. .++++||+++..+++++++++++|+
T Consensus 340 g~~~~~~~~g~~~~~~~~~~~~------~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~ 412 (425)
T 1vp4_A 340 GVKWVKSEGGLFIWLTLPEGFD------TWEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLR 412 (425)
T ss_dssp TCEECCCSBSSEEEEECCTTCC------TTTTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHH
T ss_pred ceEEecCCccEEEEEEcCCCCC------HHHHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHH
Confidence 6888778889999999985322 34678888888 9999999988643 3579999998657899999999999
Q ss_pred HHHHHHHhhc
Q 046900 432 NFMQKRERRR 441 (442)
Q Consensus 432 ~~l~~~~~~~ 441 (442)
+++++..+.+
T Consensus 413 ~~l~~~~~~~ 422 (425)
T 1vp4_A 413 EVVLEYGKEK 422 (425)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhc
Confidence 9998876653
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=368.76 Aligned_cols=345 Identities=25% Similarity=0.432 Sum_probs=285.9
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|+|+.+++.++ ++.+.+.+.+.... ....|++..|..++|+++|+|+.+.+| +++++++|++
T Consensus 40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~v~~ 106 (389)
T 1o4s_A 40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQK-----------GEVKYTDPRGIYELREGIAKRIGERYK--KDISPDQVVV 106 (389)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHTT-----------CCCCCCCTTCCHHHHHHHHHHHHHHHT--CCCCGGGEEE
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 356799999988754 35555555443211 124688778899999999999988776 4457899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++..++.+++++||.|+++.|+|+.+...++. .|++++.+|++++++|.+|+++|++.+++ ++++|+
T Consensus 107 ~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~ 179 (389)
T 1o4s_A 107 TNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIIL-AGGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAVL 179 (389)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-TTCEEEEEECCGGGTTCCCHHHHHHTCCT------TEEEEE
T ss_pred ecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHH-cCCEEEEEecCCccCCCCCHHHHHHhccc------CceEEE
Confidence 99999999999999999999999999999999998885 89999999987655788999999998764 788999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.++|.+++++|+++|+++|+++|+||+|+++.+++ .+.++..+.. ..+++++++|+||.+|++|+
T Consensus 180 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~-----~~~~~i~~~s~sK~~~~~G~ 253 (389)
T 1o4s_A 180 INSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSE-----GFDRIVYINGFSKSHSMTGW 253 (389)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCS-----SSTTEEEEEESTTTTTCGGG
T ss_pred EcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCC-----CCCcEEEEeechhhcCCccc
Confidence 99999999999999999999999999999999999999988865 3456666532 13678999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCce
Q 046900 286 RVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG 363 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 363 (442)
|+||+++ ++.+.+.+..... .+..+++.|.++.++++.. +++.++.++++++++.+.|++.|+++..+.+|
T Consensus 254 r~G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 326 (389)
T 1o4s_A 254 RVGYLIS-SEKVATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKMGVKFVEPEGA 326 (389)
T ss_dssp CCEEEEC-CHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBS
T ss_pred ceEEEEe-CHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHhcCCeeecCCcc
Confidence 9999999 5666666654432 3567888999988888764 35677888899999999999888888888899
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
+|+|++++ . +..++++.|++++||.+.||+.|+. ++++||+++. +++++++++++|.++++
T Consensus 327 ~~~~~~~~--~------~~~~l~~~l~~~~gi~v~~g~~f~~--~~~~Ris~~~-~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 327 FYLFFKVR--G------DDVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFAT-SIERLTEALDRIEDFLN 387 (389)
T ss_dssp SEEEEECS--S------CHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCS-CHHHHHHHHHHHHHHHT
T ss_pred eEEEEeCC--C------CHHHHHHHHHHHCCEEEeCchhcCC--CCeEEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 99999987 1 2568888888444999999998864 4699999997 89999999999998874
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-47 Score=370.53 Aligned_cols=357 Identities=16% Similarity=0.227 Sum_probs=296.0
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
..++|||+.+++.++ ++.+.+.+.+.... ....|++. ..++++++++++.+.++ .++++++|++
T Consensus 26 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~i~~ 90 (391)
T 3dzz_A 26 KEKELPMWIAEMDFKIAPEIMASMEEKLKV-----------AAFGYESV--PAEYYKAVADWEEIEHR--ARPKEDWCVF 90 (391)
T ss_dssp CTTCEECCSSCCSSCCCHHHHHHHHHHHTT-----------CCCCCBCC--CHHHHHHHHHHHHHHHS--CCCCGGGEEE
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHhc-----------CcCCCCCC--CHHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 347899999987764 35555555544321 13457655 58999999999999877 4467899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC-CCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD-SSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
|+|+++++.+++.+++++||+|+++.|+|..+...++. .|++++.+|++ +++.|.+|++.|++++++ .++++|
T Consensus 91 ~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~~~v 164 (391)
T 3dzz_A 91 ASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEG-NGRRVISSDLIYENSKYSVNWADLEEKLAT-----PSVRMM 164 (391)
T ss_dssp ESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHHH-TTCEEEECCCEEETTEEECCHHHHHHHHTS-----TTEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHHH-cCCEEEEeeeeecCCceeecHHHHHHHHhc-----cCceEE
Confidence 99999999999999999999999999999999999884 99999999986 456688999999999862 278999
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++++|+||||.++|.+++++|+++|++||+++|+||+|+++.+++..+.++..+... ..++++++.|+||.+|++|
T Consensus 165 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~----~~d~~i~~~s~sK~~g~~G 240 (391)
T 3dzz_A 165 VFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWD----AKNWVVSLISPSKTFNLAA 240 (391)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTT----TGGGEEEEECSHHHHTCTT
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCcc----ccCcEEEEEeChhhccccc
Confidence 999999999999999999999999999999999999999998877656666555321 1368999999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHc---cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeec
Q 046900 285 FRVGTIYSYNDKVVTTARRM---SSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA--GIECLK 359 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~---~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~ 359 (442)
+|+||++++++.+.+.+... ...+..+++.|.++..++... .+++++.++.++++++++.+.|++. |+++..
T Consensus 241 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 317 (391)
T 3dzz_A 241 LHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG---HDWLRELKQVLRDNFAYAREFLAKEVPEVKVLD 317 (391)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC
T ss_pred hhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEec
Confidence 99999999657777776654 234567888888888877642 4567888999999999999999984 899999
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+.+++++|++++.... +..++++.|++++||.+.||+.|+...++++||+++. +++++++++++|+++++++
T Consensus 318 ~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 318 SNASYLAWVDISALGM-----NAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLAC-PKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp CCBSSEEEEECGGGCS-----CHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCS-CHHHHHHHHHHHHHHHHTC
T ss_pred cCceEEEEEehhhcCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence 9999999999875211 2678889987445999999999987667899999997 8999999999999998764
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=370.30 Aligned_cols=355 Identities=24% Similarity=0.388 Sum_probs=287.9
Q ss_pred CCceeeeecccc---ccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCc
Q 046900 47 PSGVIQMGLAEN---QVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR 122 (442)
Q Consensus 47 ~~~~i~l~~~~n---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~ 122 (442)
+.++|+|+.+.+ .++ ++.+.+.+.+.... ....|++..|..++|+++++|+++.++ +++++++
T Consensus 37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~~ 103 (406)
T 1xi9_A 37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKE-----------GHNYYGDSEGLPELRKAIVEREKRKNG--VDITPDD 103 (406)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHT-----------TCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGG
T ss_pred CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCcHHHHHHHHHHHHHhcC--CCCCHHH
Confidence 456799999988 443 24444444332210 123688878899999999999998776 4577899
Q ss_pred EEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCcee
Q 046900 123 IVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVR 202 (442)
Q Consensus 123 i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 202 (442)
|++|+|+++++.+++.+++++||.|++++|+|+.+...++. .|++++.+|++++++|.+|++.|++.+++ +++
T Consensus 104 v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~ 176 (406)
T 1xi9_A 104 VRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKF-YGGKPVEYRTIEEEDWQPDIDDIRKKITD------RTK 176 (406)
T ss_dssp EEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHH-TTCEEEEEEEEGGGTSEECHHHHHHHCCT------TEE
T ss_pred EEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHH-cCCEEEEeecCCCcCCcCCHHHHHHhhCc------Cce
Confidence 99999999999999999999999999999999999998884 89999999987655788999999998864 789
Q ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCc-EEEEecCcccCC
Q 046900 203 GVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSER-VHIVYSLSKDLG 281 (442)
Q Consensus 203 ~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~-vi~~~S~SK~~g 281 (442)
+|++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++ .+.++..+. .++ +++++|+||.+|
T Consensus 177 ~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~-------~~~~~i~~~s~sK~~~ 248 (406)
T 1xi9_A 177 AIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSLT-------KDVPVIVMNGLSKVYF 248 (406)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHHC-------SSSCEEEEEESTTTTC
T ss_pred EEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCC-CCCCHHHcC-------CCceEEEEeccccccC
Confidence 99999999999999999999999999999999999999999988843 345665552 267 899999999999
Q ss_pred CCCceeEEEe--ecCH---HHHHHHHHcccc-CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Q 046900 282 LPGFRVGTIY--SYND---KVVTTARRMSSF-TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-G 354 (442)
Q Consensus 282 ~~G~RiG~i~--~~~~---~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 354 (442)
++|+|+||++ ++++ .+.+.+...... +..+++.|.++.++++.. .+++++.++.++++++++.+.|++. |
T Consensus 249 ~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~ 325 (406)
T 1xi9_A 249 ATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLKEYMKKLKERRDYIYKRLNEIPG 325 (406)
T ss_dssp CGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCccEEEEEEEecCchhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999 7541 555555543322 667888999999888643 2246778899999999999999987 8
Q ss_pred CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 355 IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 355 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
+++..+.+|+|+|++++.... .+..++++.|++++||.+.||..|+...++++||+++. +++++++++++|++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~-~~~~i~~~~~~l~~~l 400 (406)
T 1xi9_A 326 ISTTKPQGAFYIFPKIEVGPW----KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMDRFEKFM 400 (406)
T ss_dssp EECCCCCBSSEECCEECSCSC----SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHHH
T ss_pred CeeecCCeeEEEEEecCccCC----CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecC-CHHHHHHHHHHHHHHH
Confidence 888888899999998874110 12568888888445999999998875446799999995 9999999999999998
Q ss_pred HHH
Q 046900 435 QKR 437 (442)
Q Consensus 435 ~~~ 437 (442)
++.
T Consensus 401 ~~~ 403 (406)
T 1xi9_A 401 KER 403 (406)
T ss_dssp HHC
T ss_pred HHH
Confidence 764
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-47 Score=378.97 Aligned_cols=354 Identities=19% Similarity=0.254 Sum_probs=285.0
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
..++|+|+++++.++ ++.+.+.+.+....... ......|++..|..+||+++++|+. ++ +.+++++|++
T Consensus 68 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~------~~~~~~y~~~~g~~~lr~~ia~~~~--~g--~~~~~~~i~~ 137 (449)
T 3qgu_A 68 DAKIISLGIGDTTEPLPKYIADAMAKAAAGLAT------REGYSGYGAEQGQGALREAVASTFY--GH--AGRAADEIFI 137 (449)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGG------SCCCCCSTTTTCCHHHHHHHHHHHH--TT--TTCCGGGEEE
T ss_pred CCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhcc------ccCCCCCCCCCCcHHHHHHHHHHHH--cC--CCCCHHHEEE
Confidence 457899999988764 34444444433211000 0123578888899999999999997 44 4578899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcE----------EEEEecCCCCCCcCCHHHHHHHHHHHH
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIK----------IVPIHCDSSNNFQITPQALEAAYKEAE 195 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~----------v~~v~~~~~~~~~~d~~~l~~~l~~~~ 195 (442)
|+|+++++..+ .+++++||.|++++|+|..+...++. .|++ ++.++++.++++..|++.+
T Consensus 138 t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 207 (449)
T 3qgu_A 138 SDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVM-MGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-------- 207 (449)
T ss_dssp ESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHH-HTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC--------
T ss_pred ccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHH-cCCcccccccccceeEEEecccccCCcCChhHc--------
Confidence 99999999999 88889999999999999999999885 8988 9999998776777776432
Q ss_pred hcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEec
Q 046900 196 SKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275 (442)
Q Consensus 196 ~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S 275 (442)
.++++|++++|+||||.+++.+++++|+++|++||+++|+||+|+++.+++..+.++..+... .++++++.|
T Consensus 208 ---~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~s 279 (449)
T 3qgu_A 208 ---KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGA-----DEVAIETCS 279 (449)
T ss_dssp ---CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTG-----GGTEEEEEE
T ss_pred ---CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCC-----CCcEEEEec
Confidence 278899999999999999999999999999999999999999999998876555555554322 367899999
Q ss_pred CcccCCCCCceeEEEeecCHHHH-------HHHHHc--cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Q 046900 276 LSKDLGLPGFRVGTIYSYNDKVV-------TTARRM--SSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMI 346 (442)
Q Consensus 276 ~SK~~g~~G~RiG~i~~~~~~~~-------~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 346 (442)
|||.+|++|+|+||++++++.+. ..+... ..++..+++.|.++.+++.+.. .++++++++.++++++++
T Consensus 280 ~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l 357 (449)
T 3qgu_A 280 FSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG--LKEMNAMIKFYKENAQIL 357 (449)
T ss_dssp CSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH--HHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999654332 123222 2334678899999999888632 356888999999999999
Q ss_pred HHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHH
Q 046900 347 IEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVA 426 (442)
Q Consensus 347 ~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~ 426 (442)
.+.|++.|+++..+++++|+|++++ .. +..++++.|++++||.+.||+.|+..+++++||++.. ++++++++
T Consensus 358 ~~~L~~~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~-~~e~i~~~ 429 (449)
T 3qgu_A 358 KTTFTEMGFSVYGGDDAPYIWVGFP-GK------PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG-SRENILEA 429 (449)
T ss_dssp HHHHHHTTCCEEESSSSSEEEEECT-TS------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHH
T ss_pred HHHHHHCCCeeeCCCCeeEEEEECC-CC------CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-CHHHHHHH
Confidence 9999999999999999999999998 22 2678888888877999999999987667899999987 89999999
Q ss_pred HHHHHHHHHHHH
Q 046900 427 LKRIHNFMQKRE 438 (442)
Q Consensus 427 l~~l~~~l~~~~ 438 (442)
+++|++++++..
T Consensus 430 l~~l~~~~~~~~ 441 (449)
T 3qgu_A 430 VRRFKEAYGKRN 441 (449)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHhcC
Confidence 999999987643
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-47 Score=374.38 Aligned_cols=356 Identities=20% Similarity=0.319 Sum_probs=288.0
Q ss_pred ceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEEEe
Q 046900 49 GVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIVVT 126 (442)
Q Consensus 49 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~~t 126 (442)
++|+|+.+.+.++ ++.+.+.+.+.... ....|++..|..++|+++++++.+.+| .+++++ +|++|
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~~v~~t 92 (411)
T 2o0r_A 26 GAVNLGQGFPDEDGPPKMLQAAQDAIAG-----------GVNQYPPGPGSAPLRRAIAAQRRRHFG--VDYDPETEVLVT 92 (411)
T ss_dssp TCEESSCSSCSSCCCHHHHHHHHHHHHT-----------TCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEEEE
T ss_pred CeeeccCcCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCHHHHHHHHHHHHHHcC--CCCCCCceEEEe
Confidence 5789999887653 35555555443211 134688888899999999999998776 446787 99999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCC-CCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSS-NNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
+|+++++.+++.+++++||.|+++.|+|+.+...+.. .|++++.+|++++ ++|.+|++.|++.+++ ++++|+
T Consensus 93 ~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~------~~~~v~ 165 (411)
T 2o0r_A 93 VGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAM-AGAHRVTVPLVPDGRGFALDADALRRAVTP------RTRALI 165 (411)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-TTCEEEEEECEEETTEEECCHHHHHHHCCT------TEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHH-cCCEEEEeeccccccCCCCCHHHHHHhhcc------CceEEE
Confidence 9999999999999999999999999999999998884 8999999998754 3577999999998864 789999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++..+.++..+... .++++++.|+||.+|++|+
T Consensus 166 l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-----~~~~i~~~s~sK~~~~~G~ 240 (411)
T 2o0r_A 166 INSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGM-----AERTITISSAAKMFNCTGW 240 (411)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTT-----GGGEEEEEEHHHHTTCTTT
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCC-----CCCEEEEeechhhcCCccc
Confidence 99999999999999999999999999999999999999988876555555444221 3678999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCce
Q 046900 286 RVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG 363 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 363 (442)
|+||+++ ++.+.+.+..... .+..+++.|.++..+++.. .+++++.++.++++++++.+.|++.|+++..+++|
T Consensus 241 r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 316 (411)
T 2o0r_A 241 KIGWACG-PAELIAGVRAAKQYLSYVGGAPFQPAVALALDTE---DAWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGT 316 (411)
T ss_dssp CEEEEEC-CHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCBS
T ss_pred eEEEEee-CHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHcCCEecCCCee
Confidence 9999999 5666666654332 3556778888888888642 45678889999999999999998889998888999
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC-----------CCCEEEEEeecCCHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS-----------EPGWFRVCFANMSEQTLEVALKRIHN 432 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~-----------~~~~iRls~~~~~~e~i~~~l~~l~~ 432 (442)
+|+|++++.... .+..++++.|++++||.+.||+.|... .++++||+++. +++++++++++|++
T Consensus 317 ~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~~~~l~~ 391 (411)
T 2o0r_A 317 YFLCADPRPLGY----DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK-RDDTLDEAIRRLSV 391 (411)
T ss_dssp SEEEEECGGGTC----CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS-CHHHHHHHHHHHGG
T ss_pred EEEEEecCCCCC----CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 999999875210 125678888876559999999988432 35789999997 89999999999999
Q ss_pred HHHHHH
Q 046900 433 FMQKRE 438 (442)
Q Consensus 433 ~l~~~~ 438 (442)
++++.+
T Consensus 392 ~~~~~~ 397 (411)
T 2o0r_A 392 LAERPA 397 (411)
T ss_dssp GGC---
T ss_pred HHhccC
Confidence 876543
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-46 Score=369.80 Aligned_cols=359 Identities=17% Similarity=0.301 Sum_probs=291.3
Q ss_pred CCceeeeeccc-cccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC-CcE
Q 046900 47 PSGVIQMGLAE-NQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL-NRI 123 (442)
Q Consensus 47 ~~~~i~l~~~~-n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-~~i 123 (442)
+..+|||+++. ++++ ++.+.+.+.+.... .....|++..|..++++++++++.+.+| .++++ ++|
T Consensus 38 ~~~~id~~~g~~~~~~~~~~v~~a~~~~~~~----------~~~~~y~~~~g~~~l~~~l~~~l~~~~g--~~~~~~~~i 105 (407)
T 3nra_A 38 EGRPVDFSHGDVDAHEPTPGAFDLFSAGVQS----------GGVQAYTEYRGDLGIRDLLAPRLAAFTG--APVDARDGL 105 (407)
T ss_dssp CSCCEETTSCCTTTSCCCTTHHHHHHHHHHH----------THHHHSCCTTCCHHHHHHHHHHHHHHHT--SCCCTTTSE
T ss_pred CCceeeecCcCCCCCCCcHHHHHHHHHHHhc----------CCCCCcCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcE
Confidence 44689999864 4342 34444444433211 0123588888999999999999999877 34555 799
Q ss_pred EEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC----CCCCcCCHHHHHHHHHHHHhcCC
Q 046900 124 VVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS----SNNFQITPQALEAAYKEAESKDM 199 (442)
Q Consensus 124 ~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~----~~~~~~d~~~l~~~l~~~~~~~~ 199 (442)
++|+|+++++..++.+++++||.|+++.|+|..+...++. .|++++.++++. +.++.+|++.|++.+++
T Consensus 106 ~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------ 178 (407)
T 3nra_A 106 IITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEF-FEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA------ 178 (407)
T ss_dssp EEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHHH-TTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT------
T ss_pred EEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHHH-cCCEEEEeecccccccCcCCCcCHHHHHHHHhh------
Confidence 9999999999999999999999999999999999999885 999999999842 24678999999999975
Q ss_pred ceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCccc
Q 046900 200 RVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKD 279 (442)
Q Consensus 200 ~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~ 279 (442)
+++++++++|+||||.+++.+++++|+++|++||+++|+||+|+.+.+++..+.++..+... ..+++++++||||.
T Consensus 179 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~----~~~~~i~~~s~sK~ 254 (407)
T 3nra_A 179 GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAV----DAENVVTIMGPSKT 254 (407)
T ss_dssp TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTS----CGGGEEEEECSSST
T ss_pred CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcc----cCCcEEEEeCcccc
Confidence 78899999999999999999999999999999999999999999999887666665544311 14788999999999
Q ss_pred CCCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 046900 280 LGLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIE 356 (442)
Q Consensus 280 ~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 356 (442)
+|++|+|+||+++ ++.+.+.++..... ...+++.|.++..++.... +++++.+++++++++.+.+.|+++ ++.
T Consensus 255 ~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 330 (407)
T 3nra_A 255 ESLSGYRLGVAFG-SRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAP---GWMEDRIARHQAIRDELLHVLRGCEGVF 330 (407)
T ss_dssp TCCGGGCCEEEEE-CHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCT---THHHHHHHHHHHHHHHHHHHHHTSTTCB
T ss_pred cCCCeeeEEEEEc-CHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 9999999999999 56676666544332 4456788888888887532 245677788899999999999987 888
Q ss_pred eecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 357 CLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 357 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
+..+.+++|+|++++.... +..++++.|++++||.+.||+.|+...++++||+++. +++++++++++|++++++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~~~~ 404 (407)
T 3nra_A 331 ARTPQAGSYLFPRLPKLAV-----APAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLVER 404 (407)
T ss_dssp CCCCSBSSEECCBCCCBSS-----CHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred eccCCeeEEEEEeCCCCCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHHH
Confidence 8888999999999876211 3678888887766999999999987677899999998 999999999999999987
Q ss_pred HH
Q 046900 437 RE 438 (442)
Q Consensus 437 ~~ 438 (442)
++
T Consensus 405 ~~ 406 (407)
T 3nra_A 405 YR 406 (407)
T ss_dssp HB
T ss_pred hh
Confidence 54
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-46 Score=367.72 Aligned_cols=353 Identities=16% Similarity=0.231 Sum_probs=285.2
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHH-HHHHHHHHHHHHhCCCCccCCCcEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKS-FRQAMASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~-lr~~ia~~l~~~~~~~~~~~~~~i~ 124 (442)
+.++|||+.+.+.++ ++.+.+.+.+.... ....|++. ..+ +|+++|+++++.+| +++++++|+
T Consensus 27 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~y~~~--~~~~lr~~la~~l~~~~g--~~~~~~~v~ 91 (390)
T 1d2f_A 27 TADLLPFTISDMDFATAPCIIEALNQRLMH-----------GVFGYSRW--KNDEFLAAIAHWFSTQHY--TAIDSQTVV 91 (390)
T ss_dssp ---CEECCSSSCSSCCCHHHHHHHHHHHTT-----------CCCCCCCS--CCHHHHHHHHHHHHHHSC--CCCCGGGEE
T ss_pred CCCeeEeeecCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCC--ChHHHHHHHHHHHHHhcC--CCCCHHHEE
Confidence 357899999988664 35566655544211 13457664 678 99999999998766 446789999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCC-CCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSN-NFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
+|+|+++++.+++.+++++||.|+++.|+|+.+...++. .|++++.+|++.++ .|.+|++.|++.+++ .++++
T Consensus 92 ~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-----~~~~~ 165 (390)
T 1d2f_A 92 YGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEG-NQRTVMPVALEKQADGWFCDMGKLEAVLAK-----PECKI 165 (390)
T ss_dssp EESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHH-TTCEEEEEECEECSSSEECCHHHHHHHHTS-----TTEEE
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHH-CCCEEEEeecccCCCccccCHHHHHHHhcc-----CCCeE
Confidence 999999999999999999999999999999999998884 89999999987553 678999999998863 26889
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
|++++|+||||.+++.+++++|+++|++||++||+||+|+++.+++..+.++..+..+ ... . +.|+||.+|++
T Consensus 166 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-----~~d-~-~~s~sK~~~~~ 238 (390)
T 1d2f_A 166 MLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARG-----DWA-L-LTSGSKSFNIP 238 (390)
T ss_dssp EEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCS-----SEE-E-EECSHHHHTCG
T ss_pred EEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchh-----hHh-h-ccCccHhhccc
Confidence 9999999999999999999999999999999999999999988876555555444221 102 2 89999999999
Q ss_pred CceeEEEeecCHHHHHHHHHcc----ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCee
Q 046900 284 GFRVGTIYSYNDKVVTTARRMS----SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS-A-GIEC 357 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~ 357 (442)
|+|+||++++++.+.+.+.... .++..+++.|.++.++++.. .+++++.++.++++++.+.+.|++ . |+++
T Consensus 239 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 315 (390)
T 1d2f_A 239 ALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG---APWLDALRIYLKDNLTYIADKMNAAFPELNW 315 (390)
T ss_dssp GGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCC
T ss_pred ChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEE
Confidence 9999999996667766665433 23467888888888877642 456788899999999999999988 5 8888
Q ss_pred ecCCceEEEEEecCCc-ccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 358 LKGNAGLFCWMNLSPL-LEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 358 ~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
..+.+++++|++++.. . +..++++.|++++||.+.||+.|+...++++||+++. +++++++++++|++++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 316 QIPQSTYLAWLDLRPLNI------DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp CCCSBCSEEEEECGGGCC------CHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred ecCCccEEEEEEccccCC------CHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 8899999999998752 1 2567888888666999999998864456899999998 789999999999999876
Q ss_pred H
Q 046900 437 R 437 (442)
Q Consensus 437 ~ 437 (442)
.
T Consensus 389 ~ 389 (390)
T 1d2f_A 389 V 389 (390)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=367.58 Aligned_cols=355 Identities=15% Similarity=0.190 Sum_probs=288.0
Q ss_pred Cceeeeecccc-cccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCc---
Q 046900 48 SGVIQMGLAEN-QVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR--- 122 (442)
Q Consensus 48 ~~~i~l~~~~n-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~--- 122 (442)
+++|||+.+.+ .++. +.+ .+++....... . .....|++..|..++|+++|+++.+.. +++++++
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~-~~~~a~~~~~~------~-~~~~~y~~~~g~~~lr~~ia~~~~~~~---~~~~~~~~~~ 115 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFA-SSLDAMFNDLT------P-DEIFPYAPPQGIEELRDLWQQKMLRDN---PELSIDNMSR 115 (430)
T ss_dssp TCSEECCCSSCEETTEECCC-HHHHTTBSSCC------G-GGTSSCCCTTCCHHHHHHHHHHHHHHC---TTCCGGGBCC
T ss_pred CCcEEeeeeeccCCCCchhh-HHHHHHHHhcC------c-ccccccCCCCCCHHHHHHHHHHHhccC---cccCCCccce
Confidence 46799999988 6542 222 12222221110 0 124679888899999999999998763 3467889
Q ss_pred EEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhh-cCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCce
Q 046900 123 IVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWR-TGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201 (442)
Q Consensus 123 i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (442)
|++|+|+++++.+++.+++++||+|+++.|+|+.+...++ . .|++++.+++++++ |.+|++.|++.+++. +.++
T Consensus 116 i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-~~~g~~~~~~~~~~~~-~~~d~~~l~~~l~~~---~~~~ 190 (430)
T 2x5f_A 116 PIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFN-TRNGANLQTYPIFDKD-GHYTTDSLVEALQSY---NKDK 190 (430)
T ss_dssp CEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHT-TTTCCEEEEECCBCTT-SCBCSHHHHHHHHHC---CSSE
T ss_pred EEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHH-HhcCCeEEEEeccCcc-CCcCHHHHHHHHHhc---CCCC
Confidence 9999999999999999999999999999999999998887 6 89999999987644 779999999998752 2367
Q ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHh-----cCcEEEEeccCCcCCCCCCCcccHH-HHHhhhcCCCCCc---EEE
Q 046900 202 RGVLITNPSNPLGATIQRSVLEELLDFATR-----KNIHLVSDEIYSGSAFSSSEFVSIA-EILEARQYKDSER---VHI 272 (442)
Q Consensus 202 ~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~-----~~~~vi~De~y~~~~~~~~~~~s~~-~~~~~~~~~~~~~---vi~ 272 (442)
+++++++|+||||.+++.+++++|+++|++ +|++||+||+|+++.+++..+.++. .+... .++ +++
T Consensus 191 ~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~ 265 (430)
T 2x5f_A 191 VIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNL-----HSNAILPIR 265 (430)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTT-----CCTTEEEEE
T ss_pred EEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhc-----cCCcceEEE
Confidence 899999999999999999999999999999 9999999999999988775556666 56431 367 899
Q ss_pred EecCcccCCCCCceeEEEee--cCHHHHHHHHHcc------ccCCCcHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHH
Q 046900 273 VYSLSKDLGLPGFRVGTIYS--YNDKVVTTARRMS------SFTLISSQTQYLLASMLS-NKKFTENYIKTNRERLQKRY 343 (442)
Q Consensus 273 ~~S~SK~~g~~G~RiG~i~~--~~~~~~~~~~~~~------~~~~~s~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~ 343 (442)
++||||.||++|+|+||+++ +++.+.+.+.... ..+..+++.|.++.++++ +.++ .+++++.++.+++++
T Consensus 266 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~ 344 (430)
T 2x5f_A 266 LDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQF-DKEIEQNIQTLKERY 344 (430)
T ss_dssp EEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHH
T ss_pred EEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHH-HHHHHHHHHHHHHHH
Confidence 99999999999999999998 3455666554432 235688999999999998 8655 445666899999999
Q ss_pred HHHHHHHH----hCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCC
Q 046900 344 QMIIEGLR----SAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMS 419 (442)
Q Consensus 344 ~~l~~~L~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~ 419 (442)
+.+.+.|+ +.|+++..+++|+|+|++++ .. +..++++.|++++||.+.|| .++++||+++..+
T Consensus 345 ~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~-~~------~~~~~~~~l~~~~gi~v~~g------~~~~iRis~~~~~ 411 (430)
T 2x5f_A 345 EVTKEVVYADQYHSHWQAYDFNSGYFMAIKVH-DV------DPEALRKHLIDKYSIGVIAL------NATDIRIAFSCVE 411 (430)
T ss_dssp HHHHHHHTCGGGTTTEEECCCCBSSEEEEEES-SS------CHHHHHHHHHHHHCEECEEC------SSSEEEEEGGGSC
T ss_pred HHHHHHHHhhCCCCCceeeCCCceEEEEeCCC-CC------CHHHHHHHHHHhCCEEEecC------CCCeEEEEEecCC
Confidence 99999998 66888888999999999997 22 26788899988349999997 3578999999338
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 046900 420 EQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 420 ~e~i~~~l~~l~~~l~~~ 437 (442)
++++++++++|++++++.
T Consensus 412 ~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 412 KDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998765
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=362.80 Aligned_cols=352 Identities=18% Similarity=0.279 Sum_probs=291.7
Q ss_pred CCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|+|+.+++.++. +.+.+.+.+.... ....|++ +..++++++++++.+.++ ..+++++|++
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~y~~--~~~~~~~~l~~~l~~~~g--~~~~~~~v~~ 95 (391)
T 4dq6_A 31 TNDLLPMWVADMDFKAAPCIIDSLKNRLEQ-----------EIYGYTT--RPDSYNESIVNWLYRRHN--WKIKSEWLIY 95 (391)
T ss_dssp CSCSEECCSSSCSSCCCHHHHHHHHHHHTT-----------CCCCCBC--CCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHhC-----------CCCCCCC--CCHHHHHHHHHHHHHHhC--CCCcHHHeEE
Confidence 3578999999887653 5555555544321 1234654 558999999999999876 4467899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC--CCCCCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD--SSNNFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~--~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
|+|+++++.+++.+++++||+|+++.|+|..+...++. .|++++.+|++ ++++|.+|+++|+++++ ++++
T Consensus 96 ~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~-------~~~~ 167 (391)
T 4dq6_A 96 SPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKN-NNRELIISPLQKLENGNYIMDYEDIENKIK-------DVKL 167 (391)
T ss_dssp ESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHHH-TTCEEEECCCEECTTSCEECCHHHHHHHCT-------TEEE
T ss_pred cCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHHH-cCCeEEeeeeeecCCCceEeeHHHHHHHhh-------cCCE
Confidence 99999999999999999999999999999999999884 99999999988 56678899999999875 2789
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
+++++|+||||.+++.+++++|+++|++||+++|+||+|+++.+++..+.++..+..+. .+++++++|+||.+|++
T Consensus 168 v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~----~~~~i~~~s~sK~~g~~ 243 (391)
T 4dq6_A 168 FILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEF----EKNTITCMAPTKTFNIA 243 (391)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHH----HHTEEEEECSHHHHTCG
T ss_pred EEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccc----cCcEEEEEechhhccCc
Confidence 99999999999999999999999999999999999999999988776555655543310 26789999999999999
Q ss_pred CceeEEEeecCHHHHHHHHHcc---ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeee
Q 046900 284 GFRVGTIYSYNDKVVTTARRMS---SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA--GIECL 358 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~---~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~ 358 (442)
|+|+||++++++.+.+.+.... ..+..+++.|.++.+.+... ++++++.++.++++++++.+.|++. |+++.
T Consensus 244 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 320 (391)
T 4dq6_A 244 GLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG---ESWLESFLEYLESNIDFAIKYINENMPKLKVR 320 (391)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEec
Confidence 9999999997657776665442 33467888888888877742 4567888999999999999999883 89999
Q ss_pred cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 359 KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 359 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
.+++++++|++++.... +..++++.|++++||.+.||+.|+....+++||+++. +++++++++++|++++
T Consensus 321 ~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 321 KPEGTYLLWVDFSALGL-----SDEELESILVQKGKVALNQGNSFGIGGSGYQRINLAC-PRSMLEEALIRIKNAI 390 (391)
T ss_dssp CCSBSSEEEEECGGGCC-----CHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCS-CHHHHHHHHHHHHHHH
T ss_pred CCCccEEEEEEhhhcCC-----CHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 99999999999875211 3678888988877999999999987667899999996 8999999999999876
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=358.50 Aligned_cols=332 Identities=16% Similarity=0.211 Sum_probs=280.6
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.++|+|+.++|+++ ++.+.+.+.+... ....|++..+ .++|+++|++++ +++++|++|
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~y~~~~~-~~lr~~la~~~~--------~~~~~v~~~ 88 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNAN------------KAHLYPDDSM-IELKSTLAQKYK--------VQNENIIIG 88 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGG------------GTTSCCCTTC-HHHHHHHHHHHT--------CCGGGEEEE
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHH------------hhccCCCCCh-HHHHHHHHHHhC--------CCcceEEEC
Confidence 57899999999885 3556665554431 2456877766 899999999985 578999999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+|+++++.+++.+++++||+|+++.|+|..+...++. .|++++.+++ .+.++ +|+++|++++++ ++++|++
T Consensus 89 ~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~-~g~~~~~v~~-~~~~~-~d~~~l~~~l~~------~~~~v~~ 159 (365)
T 3get_A 89 AGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQ-CGAKCYKTQS-ITHNL-DEFKKLYETHKD------EIKLIFL 159 (365)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHH-HTCEEEECSS-SSCCH-HHHHHHHHHTTT------TEEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHHHHH-cCCEEEEEec-CCCCC-CCHHHHHHHhCC------CCCEEEE
Confidence 9999999999999999999999999999999998885 8999999998 23467 999999998864 8899999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCC--CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAF--SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~--~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++|+||||.+++.+++.+|+++| ++|+++|+||+|+++.| .+..+.+....... .+++++++|+||.+|++|
T Consensus 160 ~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~s~sK~~~~~G 233 (365)
T 3get_A 160 CLPNNPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKE-----FDNVLYLGTFSKLYGLGG 233 (365)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHH-----CTTEEEEEESSSTTSCTT
T ss_pred cCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhcc-----CCCEEEEeecchHhcCcc
Confidence 99999999999999999999999 57999999999998875 44344455555433 478999999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceE
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGL 364 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~ 364 (442)
+|+||+++ ++.+.+.+......+..+++.|.++.+++++. +++++.++.++++++++.+.|++.|+++.++.++
T Consensus 234 ~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~- 307 (365)
T 3get_A 234 LRIGYGIA-NANIISAFYKLRAPFNVSNLALKAAVAAMDDD----EFTEKTLENNFSQMELYKEFAKKHNIKIIDSYTN- 307 (365)
T ss_dssp TCCEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSS-
T ss_pred hheEEEEc-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHhCCCEECCCCCe-
Confidence 99999999 67788887777767778999999999999864 4578888999999999999999999988776665
Q ss_pred EEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 365 FCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
|+|++++.. +..++++.|.++ ||.+.||+.|+ ++++||+++ ++++++++++.|++++
T Consensus 308 ~~~~~~~~~-------~~~~~~~~l~~~-gi~v~~g~~~~---~~~iRis~~--~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 308 FITYFFDEK-------NSTDLSEKLLKK-GIIIRNLKSYG---LNAIRITIG--TSYENEKFFTEFDKIL 364 (365)
T ss_dssp EEEEECSSS-------CHHHHHHHHHTT-TEECEECGGGT---CSEEEEECC--CHHHHHHHHHHHHHHH
T ss_pred EEEEECCCC-------CHHHHHHHHHHC-CEEEEECccCC---CCEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 689998763 267888888776 99999999886 689999998 5888999999999875
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=365.79 Aligned_cols=352 Identities=17% Similarity=0.215 Sum_probs=277.9
Q ss_pred Cceeeeecccc-----cc-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 48 SGVIQMGLAEN-----QV-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 48 ~~~i~l~~~~n-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
.++|+|+.+++ ++ +++.+.+.+.+... .....|++..|.++||+++++++.+..+. . .++
T Consensus 38 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~~~~~~~~--~-~~~ 103 (418)
T 3rq1_A 38 ENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSD-----------SEHVGYAPIAGIPDFLCAAEKECFGNFRP--E-GHI 103 (418)
T ss_dssp GGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCH-----------HHHHSCCCTTCCHHHHHHHHHHHHGGGCC--S-SEE
T ss_pred CCeEECCCCcccCCCCCccccHHHHHHHHHhcc-----------cccCCCCCCCChHHHHHHHHHHHhcccCc--c-ccc
Confidence 47899999863 33 34666766665431 12357988889999999999999765431 1 133
Q ss_pred cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCce
Q 046900 122 RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (442)
+|++|+|+++++..++.+++++||.|+++.|+|+.+...++. .|++++.+|+++++ |.+|++.|++.+++.... ++
T Consensus 104 ~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~v~~~~~~-~~~d~~~l~~~l~~~~~~--~~ 179 (418)
T 3rq1_A 104 RSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSD-TGRTLVTYSLFDEH-NNFNHEAFQNRVNELAAK--QT 179 (418)
T ss_dssp EEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHH-TTCEEEEECSBCTT-SSBCHHHHHHHHHHHHHH--CS
T ss_pred cEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHH-cCCEEEEEeeeCCC-CCcCHHHHHHHHHHhhcc--CC
Confidence 999999999999999999999999999999999999999885 99999999986544 789999999999753211 34
Q ss_pred e-EEEEeCC-CCCCCcCCCHHHHHHHHHHHH------hcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCc--EE
Q 046900 202 R-GVLITNP-SNPLGATIQRSVLEELLDFAT------RKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSER--VH 271 (442)
Q Consensus 202 ~-~v~l~~P-~NPtG~~~~~~~l~~l~~~~~------~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~--vi 271 (442)
+ ++++++| |||||.+++.+++++|+++|+ +|+++||+||+|.++.+++....++.....+ ..++ ++
T Consensus 180 ~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~----~~~~~~~i 255 (418)
T 3rq1_A 180 NVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSH----LPKEILTC 255 (418)
T ss_dssp EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTT----CCTTEEEE
T ss_pred CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHh----cCCCceEE
Confidence 4 7889999 999999999999999999999 8999999999999987654322222222111 1234 58
Q ss_pred EEecCcccCCCCCceeEEEee--cCHHHHHHHHHccc------cCCCcHHHHHHHHHHhcCchhH---HHHHHHHHHHHH
Q 046900 272 IVYSLSKDLGLPGFRVGTIYS--YNDKVVTTARRMSS------FTLISSQTQYLLASMLSNKKFT---ENYIKTNRERLQ 340 (442)
Q Consensus 272 ~~~S~SK~~g~~G~RiG~i~~--~~~~~~~~~~~~~~------~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~ 340 (442)
+++||||.+|++|+|+||+++ +++.+.+.+..... +..++.++|.++..++++.++. .++++++++.++
T Consensus 256 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 335 (418)
T 3rq1_A 256 VCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIR 335 (418)
T ss_dssp EEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988 35666666554321 2357889999999999987532 334556788999
Q ss_pred HHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCH
Q 046900 341 KRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSE 420 (442)
Q Consensus 341 ~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~ 420 (442)
++++++.+.|++.|+++..+++|+|+|++++. ..++++.|.+ +||.+.|| ++++||+++.+++
T Consensus 336 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~-~gi~v~~g-------~~~iRis~~~~~~ 398 (418)
T 3rq1_A 336 DRADIFKQEAAQVGLPMLPYRGGFFITIPTDS---------ANAICEELKK-EHIYVIAL-------ANGIRIAACGIPK 398 (418)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCSSSEEEEECTT---------HHHHHHHHHH-TTEECEEC-------SSEEEEEGGGSCH
T ss_pred HHHHHHHHHHHhcCCCCCCCCceEEEEcCCCC---------HHHHHHHHHh-CCEEEecC-------CCCeEEEEecCCH
Confidence 99999999999889999999999999998753 5677776654 59999997 3679999985589
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 046900 421 QTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 421 e~i~~~l~~l~~~l~~~~ 438 (442)
+++++++++|+++++++.
T Consensus 399 ~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 399 CQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp HHHTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998754
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=373.11 Aligned_cols=357 Identities=13% Similarity=0.154 Sum_probs=289.6
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
..++|+|+.++++++ ++.+.+.+.+.... .....|++..|..++|+++|+++++.++ +++++++|++
T Consensus 43 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----------~~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~i~~ 110 (437)
T 3g0t_A 43 GTKFCRMEMGVPGLPAPQIGIETEIQKLRE----------GVASIYPNLDGLPELKQEASRFAKLFVN--IDIPARACVP 110 (437)
T ss_dssp TCCCEECCCCSCCSCCCHHHHHHHHHHHHH----------TGGGSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCCEEeccCcCCCCCCCHHHHHHHHHHHhC----------CcCcCCCCCCChHHHHHHHHHHHHHhhC--CCCCcccEEE
Confidence 357899999998875 35555554443211 0125788888999999999999998877 4578899999
Q ss_pred ecChHHHHHHHHHhhc--CCCC--eEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCce
Q 046900 126 TAGATAANELLTFILA--DPGD--ALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~--~~gd--~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (442)
|+|+++++.+++.+++ ++|| +|+++.|+|..+...++. .|++++.++++ +++|.+|++.|++++++ .++
T Consensus 111 t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~-~g~~~~~v~~~-~~~~~~d~~~l~~~l~~-----~~~ 183 (437)
T 3g0t_A 111 TVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRI-LGQKFESFDLF-EYRGEKLREKLESYLQT-----GQF 183 (437)
T ss_dssp ESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHH-HTCCCEEEEGG-GGCTTHHHHHHHHHHTT-----TCC
T ss_pred eCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHH-cCCEEEEEeec-CCCCccCHHHHHHHHhc-----CCc
Confidence 9999999999999998 9999 999999999999999885 89999999997 45688999999999832 278
Q ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc----cH-HHHHhhhcCCCCCcEEEEecC
Q 046900 202 RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV----SI-AEILEARQYKDSERVHIVYSL 276 (442)
Q Consensus 202 ~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~----s~-~~~~~~~~~~~~~~vi~~~S~ 276 (442)
++|++++|+||||.+++.+++++|+++|++||++||+||+|+++.+++.... ++ ..+.. ..+++++++|+
T Consensus 184 ~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~s~ 258 (437)
T 3g0t_A 184 CSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVAN-----YTDNYILALSS 258 (437)
T ss_dssp CEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGG-----TCSCEEEEEES
T ss_pred eEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCC-----CCCcEEEEEcC
Confidence 9999999999999999999999999999999999999999999887632111 00 22222 14789999999
Q ss_pred cccCCCCCceeEEEeecCHHHHH-H-----------------HHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHH
Q 046900 277 SKDLGLPGFRVGTIYSYNDKVVT-T-----------------ARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNR 336 (442)
Q Consensus 277 SK~~g~~G~RiG~i~~~~~~~~~-~-----------------~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 336 (442)
||.+|++|+|+||++++ +.+.+ . +..... .+..+++.|.++..+++......+++++.+
T Consensus 259 sK~~~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 337 (437)
T 3g0t_A 259 SKAFSYAGQRIGVLMIS-GKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSV 337 (437)
T ss_dssp TTTTSCGGGCCEEEEEC-HHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHH
T ss_pred ccCCCCccceeEEEEEC-HHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHH
Confidence 99999999999999995 55555 4 443322 367889999999998876432122267888
Q ss_pred HHHHHHHHHHHHHHHhCCCeee-------cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCC
Q 046900 337 ERLQKRYQMIIEGLRSAGIECL-------KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPG 409 (442)
Q Consensus 337 ~~~~~~~~~l~~~L~~~g~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~ 409 (442)
+.++++++.+.+.|++.|+++. ++.+++|+|++++. . +..++++.|+++ ||.+.||..|+...++
T Consensus 338 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~l~~~L~~~-gi~v~~~~~~~~~~~~ 409 (437)
T 3g0t_A 338 IEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYKG-M------DSSKLIEKFVRY-GMCAITLKTTGSKRNE 409 (437)
T ss_dssp HHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEETT-C------CHHHHHHHHHHT-TEECEESTTTTCCCTT
T ss_pred HHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecCC-C------CHHHHHHHHHHc-CeEEeeccccCCCCCC
Confidence 9999999999999999898887 43889999999982 1 367888998877 9999999998765557
Q ss_pred EEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 410 WFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 410 ~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
++||+++..+++++++++++|++++++
T Consensus 410 ~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 410 AMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp CEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 899999966899999999999998753
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-45 Score=359.05 Aligned_cols=353 Identities=18% Similarity=0.293 Sum_probs=286.3
Q ss_pred Cceeeeeccccc---ccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEE
Q 046900 48 SGVIQMGLAENQ---VSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 48 ~~~i~l~~~~n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 124 (442)
+++|||+.+.+. ++++.+.+.+.+...... .....|++..|..++|++++++++ +++++|+
T Consensus 32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~--------~~~~~y~~~~~~~~l~~~la~~~g--------~~~~~v~ 95 (397)
T 2zyj_A 32 PGILSFAGGLPAPELFPKEEAAEAAARILREKG--------EVALQYSPTEGYAPLRAFVAEWIG--------VRPEEVL 95 (397)
T ss_dssp TTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHH--------HHHTSCCCTTCCHHHHHHHHHHHT--------SCGGGEE
T ss_pred CCceecCCCCCCchhCCHHHHHHHHHHHHHhcc--------hhhhCCCCCCCCHHHHHHHHHHhC--------CChhhEE
Confidence 367899876532 255666655544321100 013468877899999999999984 5688999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++.+++.+++++||+|+++.|+|+.+...++. .|++++.+|++++ .+|+++|++.+++ .++++|
T Consensus 96 ~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~~---~~d~~~l~~~l~~-----~~~~~v 166 (397)
T 2zyj_A 96 ITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRL-QGPRFLTVPAGEE---GPDLDALEEVLKR-----ERPRFL 166 (397)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHT-TCCEEEEEEEETT---EECHHHHHHHHHH-----CCCSCE
T ss_pred EeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHH-cCCEEEecCcCCC---CCCHHHHHHHHhh-----cCCeEE
Confidence 999999999999999999999999999999999998884 8999999998754 2899999999875 156777
Q ss_pred -EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 205 -LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 205 -~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
++++|+||||.+++.+++++|+++|++||++||+||+|+++.+++..+.++..+..+. ..+++++++|+||.+| +
T Consensus 167 ~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~---~~~~~i~~~s~sK~~~-~ 242 (397)
T 2zyj_A 167 YLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREA---GYPGVIYLGSFSKVLS-P 242 (397)
T ss_dssp EECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHH---TCCCEEEEEESTTTTC-G
T ss_pred EECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCccc---CCCeEEEEeccccccc-c
Confidence 4689999999999999999999999999999999999999988776566777765420 0167899999999999 9
Q ss_pred CceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC---CCeee
Q 046900 284 GFRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA---GIECL 358 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~ 358 (442)
|+|+||++++ +.+.+.+..... .+..+++.|.++.++++...+ +++++.++.++++++.+.+.|++. |+++.
T Consensus 243 G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~ 319 (397)
T 2zyj_A 243 GLRVAFAVAH-PEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFS--ERLERVRRVYREKAQAMLHALDREVPKEVRYT 319 (397)
T ss_dssp GGCCEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHH--HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEEC
T ss_pred cceeEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEc
Confidence 9999999994 666666654332 245688999999999987643 668888999999999999999875 78887
Q ss_pred cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC--CCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 359 KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS--EPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 359 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~--~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
.+.+|+|+|++++... +..++++.|+++ ||.+.||..|+.. .++++||+++..+++++++++++|++++++
T Consensus 320 ~~~~g~~~~~~~~~~~------~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 392 (397)
T 2zyj_A 320 RPKGGMFVWMELPKGL------SAEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRALKG 392 (397)
T ss_dssp CCSBSSEEEEECSTTC------CHHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred cCCccEEEEEEcCCCC------CHHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 8888999999997532 256888898888 9999999988643 458999999875799999999999999987
Q ss_pred HHh
Q 046900 437 RER 439 (442)
Q Consensus 437 ~~~ 439 (442)
..+
T Consensus 393 ~~~ 395 (397)
T 2zyj_A 393 LLA 395 (397)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-46 Score=378.38 Aligned_cols=356 Identities=16% Similarity=0.210 Sum_probs=271.9
Q ss_pred eeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHH-HHHhCCCC-ccCCCcEEEec
Q 046900 50 VIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFM-EQIRGGRA-KFDLNRIVVTA 127 (442)
Q Consensus 50 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l-~~~~~~~~-~~~~~~i~~t~ 127 (442)
+|+|+++++.++++.+...+.+.. ....|+++.|..++|+++++++ .++.+.+. ..++++|++|+
T Consensus 106 ~i~l~~g~~~~~~~~~~~al~~~~-------------~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~ 172 (546)
T 2zy4_A 106 SLSYVRDQLGLDPAAFLHEMVDGI-------------LGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVE 172 (546)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHH-------------HTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEE
T ss_pred hhecccCCCCCCChHHHHHHHHhh-------------hcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEEC
Confidence 789999988887655444443321 1247999989999999987765 44433222 12578999999
Q ss_pred ChHHHHHHHHHh-----hcCCCCeEEEcCCCCcChHHhHhh-hcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCce
Q 046900 128 GATAANELLTFI-----LADPGDALLVPTPYYPGFDRDLRW-RTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201 (442)
Q Consensus 128 G~~~ai~~~~~~-----l~~~gd~Vl~~~p~y~~~~~~~~~-~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (442)
|+++++..++.+ ++++||.|++++|+|+.|...+.. ..|++++.++++++++|.+|++.|++.+. .++
T Consensus 173 G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~------~~~ 246 (546)
T 2zy4_A 173 GGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD------PAI 246 (546)
T ss_dssp HHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS------TTE
T ss_pred CHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC------CCC
Confidence 999999999987 578999999999999999887542 24799999999888889999999988753 278
Q ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHH--HhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCccc
Q 046900 202 RGVLITNPSNPLGATIQRSVLEELLDFA--TRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKD 279 (442)
Q Consensus 202 ~~v~l~~P~NPtG~~~~~~~l~~l~~~~--~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~ 279 (442)
++|++||||||||.+++.+++++|+++| ++++++||+||+|+++.++ +.++.... .+++++++||||.
T Consensus 247 k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~---~~s~~~~~-------~~~~i~~~S~SK~ 316 (546)
T 2zy4_A 247 KIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD---FQSLFAIC-------PENTLLVYSFSKY 316 (546)
T ss_dssp EEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT---CCCHHHHC-------GGGEEEEEESTTT
T ss_pred eEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc---CcCHHHhC-------CCCEEEEEeCccc
Confidence 9999999999999999999999999999 7899999999999998753 44565542 2689999999999
Q ss_pred CCCCCceeEEEeecCHHHHHHHHH-------------c-------------------------cccCCCcHHHHHHH---
Q 046900 280 LGLPGFRVGTIYSYNDKVVTTARR-------------M-------------------------SSFTLISSQTQYLL--- 318 (442)
Q Consensus 280 ~g~~G~RiG~i~~~~~~~~~~~~~-------------~-------------------------~~~~~~s~~~q~~~--- 318 (442)
+|++|+|+||++++++.+.+.+.. . .....++.+.|.++
T Consensus 317 ~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~ 396 (546)
T 2zy4_A 317 FGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALF 396 (546)
T ss_dssp TTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHH
T ss_pred cCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHH
Confidence 999999999999976534444311 1 11135677888764
Q ss_pred --HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCccc---ccCh-------hhHHHHH
Q 046900 319 --ASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLE---EQTR-------EGELALW 386 (442)
Q Consensus 319 --~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~---~~~~-------~~~~~l~ 386 (442)
++++++. +.|++++++.|+++++.+.+.|. .++.+.++++|||+|++++.+.. ...+ .+..+++
T Consensus 397 a~~all~~~---~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l 472 (546)
T 2zy4_A 397 SLFALMDEA---DEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDML 472 (546)
T ss_dssp HHHHHHCTT---CHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHH
Confidence 3455543 34678889999999999999996 56666778999999999864210 0000 0123334
Q ss_pred HHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 387 DSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 387 ~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
.++++++||.+.||+.|+. .++++||+++..+++++++++++|+++++++.+
T Consensus 473 ~~ll~~~gV~v~pG~~F~~-~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~~ 524 (546)
T 2zy4_A 473 FRIADETGIVLLPGRGFGS-NRPSGRASLANLNEYEYAAIGRALRKMADELYA 524 (546)
T ss_dssp HHHHHHHSCCCEESSCTTC-SSCEEEEESSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEeCccccCC-CCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4455555999999999975 468999999976899999999999999887653
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=359.05 Aligned_cols=339 Identities=22% Similarity=0.411 Sum_probs=277.4
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|+|+.+++.++ ++.+.+.+.+.... ....|++..|..++|+++|+|+++.+| +.+++++|++
T Consensus 28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~y~~~~~~~~l~~~la~~~~~~~g--~~~~~~~v~~ 94 (370)
T 2z61_A 28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLKE-----------GKTHYTDSRGILELREKISELYKDKYK--ADIIPDNIII 94 (370)
T ss_dssp TCCCEECCCCSCSSCCCHHHHHHHHHHHHT-----------TCCSCCCTTCCHHHHHHHHHHHHHHSS--CCCCGGGEEE
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHHc-----------CccCCCCCCCCHHHHHHHHHHHHHHhC--CCCChhhEEE
Confidence 456899999988763 34455544433211 134688878999999999999998776 4577899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++.+++.+++++||.|++++|+|+.+...++. .|++++.++ +|+++|++.+++ ++++|+
T Consensus 95 ~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~v~--------~d~~~l~~~l~~------~~~~v~ 159 (370)
T 2z61_A 95 TGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRF-LGAKPVFCD--------FTVESLEEALSD------KTKAII 159 (370)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHH-TTCEEEEEC--------SSHHHHHHHCCS------SEEEEE
T ss_pred CCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHH-cCCEEEEeC--------CCHHHHHHhccc------CceEEE
Confidence 99999999999999999999999999999999998885 899999887 588999988754 788999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.+++.+ |+++|++||++||+||+|+++.+++. +.++..+.. ..+++++++|+||.+|++|+
T Consensus 160 ~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~-----~~~~~i~~~s~sK~~~~~G~ 229 (370)
T 2z61_A 160 INSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK-CYSAIEFDE-----NLEKTILINGFSKLYAMTGW 229 (370)
T ss_dssp EESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSC-CCCGGGTCT-----TCSSEEEEEESTTTTTCGGG
T ss_pred EcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCC-CcCHHHccC-----CCCcEEEEecChhccCCccc
Confidence 999999999999976 88999999999999999999888653 334443321 24789999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCce
Q 046900 286 RVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG 363 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 363 (442)
|+||+++ ++.+.+.++.... .+..+++.|.++.++++.. ..+++++.++.++++++++.+.|++.|+++..+++|
T Consensus 230 r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 306 (370)
T 2z61_A 230 RIGYVIS-NDEIIEAILKLQQNLFISAPTISQYAALKAFEKE--TEREINSMIKEFDRRRRLVLKYVKDFGWEVNNPIGA 306 (370)
T ss_dssp CCEEEEC-CHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCBT
T ss_pred eEEEEEE-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCcc
Confidence 9999999 4566666654433 2467889999888888741 145678889999999999999999888888888899
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
+|+|++++. +..++++.|++++||.+.||+.|+...++++||+++. +++++++++++|+++++
T Consensus 307 ~~~~~~~~~--------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~-~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 307 YYVFPNIGE--------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYAN-SYENIKEGLERIKEFLN 369 (370)
T ss_dssp TEECCBCSS--------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCS-CHHHHHHHHHHHHHHHC
T ss_pred eEEEEecCC--------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 999999875 1567888888445999999998864346799999996 99999999999998874
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=348.63 Aligned_cols=337 Identities=17% Similarity=0.234 Sum_probs=281.0
Q ss_pred CCCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEE
Q 046900 46 NPSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 46 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 124 (442)
.+.++|||++++|+++ ++.+.+.+.+... ....|++ .+..++|+++|++++ +++++|+
T Consensus 14 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~y~~-~~~~~l~~~la~~~~--------~~~~~i~ 72 (354)
T 3ly1_A 14 STDNPIRINFNENPLGMSPKAQAAARDAVV------------KANRYAK-NEILMLGNKLAAHHQ--------VEAPSIL 72 (354)
T ss_dssp CSSSCEECSSCCCSSCCCHHHHHHHHHTGG------------GTTSCCH-HHHHHHHHHHHHHTT--------SCGGGEE
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHHHHh------------hCcCCCC-CchHHHHHHHHHHhC--------CChHHEE
Confidence 4567899999999884 4666666665532 2356754 578999999999974 6789999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++.+++.+++++||+|+++.|+|..+...++. .|++++.+++++ ++.+|++.|++.+++ ..++++|
T Consensus 73 ~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~-~g~~~~~~~~~~--~~~~d~~~l~~~l~~----~~~~~~v 145 (354)
T 3ly1_A 73 LTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKI-AGMKVTKVKMLD--NWAFDIEGLKAAVAA----YSGPSIV 145 (354)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHH-TTCEEEEECCCT--TSCCCHHHHHHHHHT----CSSCEEE
T ss_pred EeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHHH-cCCEEEEecCCC--CCCCCHHHHHHHhcc----CCCCCEE
Confidence 999999999999999999999999999999999998885 999999999875 478999999999973 1278999
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++++|+||||.+++.+++.+|+++| ++|+++|+||+|+++.+++... +....... ..+++++++|+||.+|++|
T Consensus 146 ~l~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~-~~~~~~~~----~~~~~i~~~s~sK~~g~~G 219 (354)
T 3ly1_A 146 YLVNPNNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFR-SISPMITQ----GAENIILLKTFSKIHAMAG 219 (354)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCC-CSHHHHHT----TCSSEEEEEESSSTTCCGG
T ss_pred EEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccC-CHHHHhhh----cCCCEEEEeeChhhccChh
Confidence 9999999999999999999999999 8999999999999988766433 33333332 1278999999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceE
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGL 364 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~ 364 (442)
+|+||+++ ++.+.+.++.....+..+++.|.++.++++.. +++++.++.++++++++.+.|++.|+.+.++. |+
T Consensus 220 ~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~ 293 (354)
T 3ly1_A 220 MRVGYAVA-HPTVIALMGRYVAGEKINFSGVDAALASMNDS----AFITYSKKSNDVSRQILLKALEDLKLPYLPSE-GN 293 (354)
T ss_dssp GCCEEEEC-CHHHHHHHGGGTTCSCCCHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCC-SS
T ss_pred hhheeeec-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHCCCeECCCC-ce
Confidence 99999999 67788888777777888999999999999865 45778889999999999999998888877655 45
Q ss_pred EEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 365 FCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
|+|++++. +..++.+.|.++ ||.+. |+.++ .++++||+++ +++++++++++|++++++
T Consensus 294 ~~~~~~~~--------~~~~~~~~l~~~-gi~v~-g~~~~--~~~~iRis~~--~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 294 FVFHQLVV--------PLKDYQTHMADA-GVLIG-RAFPP--ADNWCRISLG--TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp EEEEECSS--------CHHHHHHHHHHT-TEECC-CCCTT--CTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCC--------CHHHHHHHHHHC-CEEEe-ecCCC--CCCEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 79999875 256788888765 99999 76543 5689999997 588899999999998864
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-45 Score=359.42 Aligned_cols=360 Identities=21% Similarity=0.354 Sum_probs=288.4
Q ss_pred ceeeeeccccc---ccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 49 GVIQMGLAENQ---VSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 49 ~~i~l~~~~n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
++|||+.+.+. ++.+.+.+.+.+...... .... |++..|..++|+++|+++.+.+| .++++++|++
T Consensus 35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~--------~~~~-y~~~~~~~~l~~~la~~~~~~~g--~~~~~~~v~~ 103 (407)
T 2zc0_A 35 KLISLAAGDPDPELIPRAVLGEIAKEVLEKEP--------KSVM-YTPANGIPELREELAAFLKKYDH--LEVSPENIVI 103 (407)
T ss_dssp CCEECCSCCCCTTTSCHHHHHHHHHHHHHHCG--------GGGS-CCCTTCCHHHHHHHHHHHHHHSC--CCCCGGGEEE
T ss_pred ceEeCCCCCCCchhCCHHHHHHHHHHHHhhcc--------cccc-CCCCCCCHHHHHHHHHHHHHhcC--CCCCcceEEE
Confidence 67899877643 255666555543321100 1234 88888999999999999987665 4467899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE-
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV- 204 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v- 204 (442)
|+|+++++.+++.+++++||.|+++.|+|..+...+.. .|++++.+|++++ .+|++.|++.+++....+.++++|
T Consensus 104 t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~v~ 179 (407)
T 2zc0_A 104 TIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQ-LGAKIEGVPVDND---GMRVDLLEEKIKELKAKGQKVKLIY 179 (407)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHT-TTCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHH-cCCEEEEcccCCC---CCCHHHHHHHHHhhhcccCCceEEE
Confidence 99999999999999999999999999999999998884 8999999998754 289999999987322122367887
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++++|+||||.+++.+++++|+++|++||++||+||+|+.+.+++..+.++..+.. .+++++++||||.+| +|
T Consensus 180 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~------~~~~i~~~s~sK~~~-~G 252 (407)
T 2zc0_A 180 TIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDN------EGRVIVAGTLSKVLG-TG 252 (407)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCS------SCCEEEEEESTTTTC-TT
T ss_pred ECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCC------CCCEEEEcccccccC-CC
Confidence 46799999999999999999999999999999999999998887655555544422 368899999999999 99
Q ss_pred ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHH-HHHHHHHHHHHHHHHHHHHHHHhC--CCeeec
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTE-NYIKTNRERLQKRYQMIIEGLRSA--GIECLK 359 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~ 359 (442)
+|+||+++ ++.+.+.+...... +..+++.|.++.++++...+ + +++++.++.++++++++.+.|++. ++++..
T Consensus 253 ~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 330 (407)
T 2zc0_A 253 FRIGWIIA-EGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYF-EKYHLEGALLGYKEKRDIMLKALENHLPNAEFTK 330 (407)
T ss_dssp SCCEEEEC-CHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHH-HHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCC
T ss_pred cceEEEec-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEec
Confidence 99999999 46677666654333 44688999999999987633 4 567788899999999999999874 677777
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC--CCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS--EPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~--~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+.+|+|+|++++... +..++++.|++++||.+.||..|+.. .++++||+++..+++++++++++|++++++.
T Consensus 331 ~~~~~~~~~~~~~~~------~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 331 PIAGMFVMFFLPEGA------DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp CSBSSEEEEECSTTC------CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEcCCCC------CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 888999999997532 25688888888779999999988643 3579999998657899999999999998765
Q ss_pred H
Q 046900 438 E 438 (442)
Q Consensus 438 ~ 438 (442)
.
T Consensus 405 ~ 405 (407)
T 2zc0_A 405 F 405 (407)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-45 Score=360.68 Aligned_cols=353 Identities=21% Similarity=0.366 Sum_probs=288.4
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|+|+.+++.++ ++.+.+.+ +.... ....|++..|..++|+++++|+++.++ +++++++|++
T Consensus 42 g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~-----------~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~v~~ 107 (409)
T 2gb3_A 42 GVRIHHLNIGQPDLKTPEVFFERI-YENKP-----------EVVYYSHSAGIWELREAFASYYKRRQR--VDVKPENVLV 107 (409)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHH-HHTCC-----------SSCCCCCTTCCHHHHHHHHHHHHHTSC--CCCCGGGEEE
T ss_pred CCCEEeccCCCCCCCCCHHHHHHH-HHHhc-----------CCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 457899999988653 34455555 33211 124688888899999999999998765 4567899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++.+++.+++++||.|+++.|+|+.+...++. .|++++.+|++++++|.+ ++.|++.+++ ++++|+
T Consensus 108 ~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~-~~~l~~~l~~------~~~~v~ 179 (409)
T 2gb3_A 108 TNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKI-AGVKLIPVTRRMEEGFAI-PQNLESFINE------RTKGIV 179 (409)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHH-HTCEEEEEECCGGGTSCC-CTTGGGGCCT------TEEEEE
T ss_pred eCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHH-cCCEEEEeccCCCCCCcc-HHHHHHhhCc------CCeEEE
Confidence 99999999999999999999999999999999998885 899999999875456666 7888887754 789999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.+++.+++++|+++|+++|++||+||+|+.+.+++. +.++ + .+ ..+++++++|+||.+|++|+
T Consensus 180 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~-~~~~--~-~~----~~~~~i~~~s~sK~~g~~G~ 251 (409)
T 2gb3_A 180 LSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE-FASA--L-SI----ESDKVVVIDSVSKKFSACGA 251 (409)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCG--G-GS----CCTTEEEEEESTTTTTCGGG
T ss_pred ECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCC-CCCc--c-cc----CCCCEEEEecchhccCCccc
Confidence 999999999999999999999999999999999999999887663 3333 1 11 13678999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccccC-CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCee-ecCCce
Q 046900 286 RVGTIYSYNDKVVTTARRMSSFT-LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIEC-LKGNAG 363 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~g 363 (442)
|+||++++++.+.+.++.....+ ..+++.|.++.++++.. .+++++.++.++++++++.+.|++.|+++ ..+.+|
T Consensus 252 r~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 328 (409)
T 2gb3_A 252 RVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGA 328 (409)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBS
T ss_pred eEEEEEECcHHHHHHHHHHHhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCCCee
Confidence 99999997636666665544333 67889999999998753 45678888999999999999999888888 778899
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHc-----CcEEEeCCCCCCC---CCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHE-----VKLNISPGSSCHC---SEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~gi~v~pg~~f~~---~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
+|+|++++. . +..++++.|+++ +||.+.||..|+. ..++++||+++. +++++++++++|+++++
T Consensus 329 ~~~~~~~~~-~------~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~-~~e~i~~~~~~l~~~l~ 400 (409)
T 2gb3_A 329 FYITAELPV-E------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVL-EKDLLSRAIDVLMEGLK 400 (409)
T ss_dssp SEEEEECSS-S------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCC-C------CHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHH
Confidence 999999872 1 266788888776 5999999988864 236799999995 99999999999999998
Q ss_pred HHHhh
Q 046900 436 KRERR 440 (442)
Q Consensus 436 ~~~~~ 440 (442)
+.+..
T Consensus 401 ~~~~~ 405 (409)
T 2gb3_A 401 MFCSS 405 (409)
T ss_dssp HHHC-
T ss_pred Hhhhc
Confidence 87654
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-45 Score=361.96 Aligned_cols=325 Identities=16% Similarity=0.183 Sum_probs=267.2
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHH--HHHHHhhcC--C----------CCeEEEcCC
Q 046900 87 ENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAAN--ELLTFILAD--P----------GDALLVPTP 152 (442)
Q Consensus 87 ~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai--~~~~~~l~~--~----------gd~Vl~~~p 152 (442)
...+|++..|.++||++||+|++ +++++|++|+|+++++ .+++.++++ + ||+|++++|
T Consensus 70 ~~~~Y~~~~g~~~lr~~ia~~~~--------~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p 141 (427)
T 3ppl_A 70 DVRNYGGLDGIVDIRQIWADLLG--------VPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVP 141 (427)
T ss_dssp BTTSSCCSSCCHHHHHHHHHHHT--------SCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEES
T ss_pred hhcCCCCCCCcHHHHHHHHHHhC--------CCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCC
Confidence 35689998999999999999984 6789999999999999 588888877 6 899999999
Q ss_pred CCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEe-CCCCCCCcCCCHHHHHHHHHHH-H
Q 046900 153 YYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLIT-NPSNPLGATIQRSVLEELLDFA-T 230 (442)
Q Consensus 153 ~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~-~P~NPtG~~~~~~~l~~l~~~~-~ 230 (442)
+|..+...++. .|++++.+|+++++ +|++.|+++++. .++++|+++ +||||||.+++.+++++|+++| +
T Consensus 142 ~y~~~~~~~~~-~g~~~~~v~~~~~g---~d~~~l~~~l~~-----~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~ 212 (427)
T 3ppl_A 142 GYDRHFSITER-FGFEMISVPMNEDG---PDMDAVEELVKN-----PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETA 212 (427)
T ss_dssp CCHHHHHHHHH-TTCEEEEEEEETTE---ECHHHHHHHTTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCS
T ss_pred CcHHHHHHHHH-cCCEEEEeCCCCCC---CCHHHHHHHHhc-----CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhh
Confidence 99999999985 99999999998643 899999998842 378887765 7799999999999999999999 9
Q ss_pred hcCcEEEEeccCCcCCCCCCC--cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc--
Q 046900 231 RKNIHLVSDEIYSGSAFSSSE--FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS-- 306 (442)
Q Consensus 231 ~~~~~vi~De~y~~~~~~~~~--~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~-- 306 (442)
+||++||+||+|+++.|++.. +.++.++... .+..+++++++||||. +++|+|+||+++ ++.+.+.+.....
T Consensus 213 ~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~-~~~G~r~G~~~~-~~~l~~~~~~~~~~~ 288 (427)
T 3ppl_A 213 APDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEA--AGNPNRFWAFTSTSKI-TLAGAGVSFFLT-SAENRKWYTGHAGIR 288 (427)
T ss_dssp STTCEEEEECTTTTCBSSSCCCCCCCHHHHHHH--TTCTTSEEEEEESTTT-SCTTSSCEEEEC-CHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCcccccCCCCCCccchhhhhhc--cCCCCcEEEEechhhc-cCcCccEEEEEc-CHHHHHHHHHHhhcc
Confidence 999999999999998886543 4466665321 0125789999999999 579999999999 5666666654432
Q ss_pred cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeeecCCceEEEEEecCCcccccChhh
Q 046900 307 FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-----GIECLKGNAGLFCWMNLSPLLEEQTREG 381 (442)
Q Consensus 307 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 381 (442)
.+..+++.|.++..++.+.+...+++++.++.++++++.+.+.|.+. ++.+..|.+|+|+|++++.. +
T Consensus 289 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-------~ 361 (427)
T 3ppl_A 289 GIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG-------T 361 (427)
T ss_dssp CSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT-------C
T ss_pred cCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc-------h
Confidence 35678999999999999844447788899999999999999888652 57777889999999999863 2
Q ss_pred HHHHHHHHHHcCcEEEeC-CCCCCC---CCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 382 ELALWDSMLHEVKLNISP-GSSCHC---SEPGWFRVCFANMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 382 ~~~l~~~l~~~~gi~v~p-g~~f~~---~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
..++.+.|.++ ||.+.| |..|.. ..++++||+++..+++++++++++|.+++++....
T Consensus 362 ~~~~~~~l~~~-gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~~~~~ 423 (427)
T 3ppl_A 362 ASRVAELAKEA-GIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLLAAAE 423 (427)
T ss_dssp HHHHHHHHHHT-TEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56677766555 999999 555542 24689999998768899999999999999876543
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-46 Score=370.29 Aligned_cols=350 Identities=19% Similarity=0.276 Sum_probs=276.4
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|+|+++++.++ ++.+.+.+.+...... .......|++..|..+||+++++|+.+. +.+++++|++
T Consensus 55 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~------~~~~~~~y~~~~g~~~l~~~ia~~~~~~----~~~~~~~i~~ 124 (432)
T 3ei9_A 55 DAQVISLGIGDTTEPIPEVITSAMAKKAHELS------TIEGYSGYGAEQGAKPLRAAIAKTFYGG----LGIGDDDVFV 124 (432)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHHHHHTT------STTTCCCCCCTTCCHHHHHHHHHHHHTT----TTCCGGGEEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhccc------ccCCccCCCCCCCCHHHHHHHHHHHHcc----CCCCcceEEE
Confidence 357899999987764 3444444433221100 0012347888789999999999999742 4467899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcC------------cEEEEEecCCCCCCcCCHHHHHHHHHH
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTG------------IKIVPIHCDSSNNFQITPQALEAAYKE 193 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G------------~~v~~v~~~~~~~~~~d~~~l~~~l~~ 193 (442)
|+|+++++..+ ..++++||.|++++|+|+++...++. .| .+++.++++.++++..|++.
T Consensus 125 t~G~~~al~~l-~~l~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------- 195 (432)
T 3ei9_A 125 SDGAKCDISRL-QVMFGSNVTIAVQDPSYPAYVDSSVI-MGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST------- 195 (432)
T ss_dssp ESCHHHHHHHH-HHHHCTTCCEEEEESCCTHHHHHHHH-HTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-------
T ss_pred CCChHHHHHHH-HHHcCCCCEEEEeCCCCHHHHHHHHH-cCCcccccccccccCceEEeccCcccCCcCChhh-------
Confidence 99999999985 67789999999999999999988874 66 36788888766666666443
Q ss_pred HHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEE
Q 046900 194 AESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIV 273 (442)
Q Consensus 194 ~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~ 273 (442)
..+++++++++|+||||.+++.+++++|+++|++||++||+||+|+++.+++. ..++..+... .++++++
T Consensus 196 ----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~-----~~~~i~~ 265 (432)
T 3ei9_A 196 ----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN-PRSIFEIPGA-----EEVAMET 265 (432)
T ss_dssp ----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC-CSSGGGSTTG-----GGTEEEE
T ss_pred ----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC-CCChhhcCCC-----CCeEEEE
Confidence 13788999999999999999999999999999999999999999999887653 3344433221 3678999
Q ss_pred ecCcccCCCCCceeEEEeecCHH-------HHHHHHHcc--ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 046900 274 YSLSKDLGLPGFRVGTIYSYNDK-------VVTTARRMS--SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQ 344 (442)
Q Consensus 274 ~S~SK~~g~~G~RiG~i~~~~~~-------~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 344 (442)
+||||.||++|+|+||++++++. +.+.+.+.. .++..++++|.++.+++.+.. .++++++++.++++++
T Consensus 266 ~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~ 343 (432)
T 3ei9_A 266 ASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEG--LEAMHKVIGFYKENTN 343 (432)
T ss_dssp EESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHH--HHHHHHHHHHHHHHHH
T ss_pred ecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHH
Confidence 99999999999999999996654 145544332 235578899999888887532 3568889999999999
Q ss_pred HHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHH
Q 046900 345 MIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLE 424 (442)
Q Consensus 345 ~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~ 424 (442)
++.+.|++.|+++..+.+++|+|++++.. +..+++..|++++||.+.||+.|+..+++++||+++. ++++++
T Consensus 344 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~l~ 415 (432)
T 3ei9_A 344 IIIDTFTSLGYDVYGGKNAPYVWVHFPNQ-------SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFG-HRENIL 415 (432)
T ss_dssp HHHHHHHHTTCCEEECSSSSEEEEECTTS-------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHH
T ss_pred HHHHHHHHCCceecCCCcceEEEEECCCC-------CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecC-CHHHHH
Confidence 99999999999988888888999999832 2567888888877999999999986667899999987 899999
Q ss_pred HHHHHHHHHHH
Q 046900 425 VALKRIHNFMQ 435 (442)
Q Consensus 425 ~~l~~l~~~l~ 435 (442)
+++++|++--.
T Consensus 416 ~~l~rl~~~~~ 426 (432)
T 3ei9_A 416 EACRRFKQLYK 426 (432)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999987543
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=365.73 Aligned_cols=355 Identities=17% Similarity=0.244 Sum_probs=294.5
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
..++|||+++.+.++ ++.+.+.+.+.... ....|++.. .++++++++++.+.++ +++++++|++
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~y~~~~--~~l~~~l~~~l~~~~g--~~~~~~~v~~ 124 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGRE-----------HIFGYNYFN--DDLYQAVIDWERKEHD--YAVVKEDILF 124 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHH-----------CCSSCBCCC--HHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhc-----------CCcCCCCCC--HHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 568899999987764 35555555443211 124565543 8999999999999877 4467899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC-CCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD-SSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
|+|+++++..++++++++||.|+++.|+|.++...+.. .|.+++.+|++ .+++|.+|++.|++++++ .++++|
T Consensus 125 ~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~~d~~~le~~i~~-----~~~~~v 198 (421)
T 3l8a_A 125 IDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRL-NDHRLVENSLQIINGRFEIDFEQLEKDIID-----NNVKIY 198 (421)
T ss_dssp ESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHHH-TTEEEEEEECEEETTEEECCHHHHHHHHHH-----TTEEEE
T ss_pred cCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHH-CCCEEEeccccccCCCeeeCHHHHHHHhhc-----cCCeEE
Confidence 99999999999999999999999999999999998884 89999999987 566788999999999974 278999
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++..+.++..+..+ ..++++++.|+||.+|++|
T Consensus 199 il~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~----~~~~~i~~~s~sK~~g~~G 274 (421)
T 3l8a_A 199 LLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDAS----YKDFTIILSSATKTFNIAG 274 (421)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTT----GGGTEEEEECSHHHHTCGG
T ss_pred EECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCch----hcCcEEEEEeChhhccCch
Confidence 999999999999999999999999999999999999999999887666666555432 1378899999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHcc---ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC
Q 046900 285 FRVGTIYSYNDKVVTTARRMS---SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKG 360 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~---~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 360 (442)
+|+||++++++.+.+.+.... .++..+++.+.++.+++... ++++++.++.++++++++.+.|++. ++.+..+
T Consensus 275 ~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~ 351 (421)
T 3l8a_A 275 TKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG---KPWLEELKTVIEGNIKLVIKELEAKTKIKVMEP 351 (421)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECC
T ss_pred hheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCC
Confidence 999999996577777765433 33467888999888888732 4568888999999999999999885 8999999
Q ss_pred CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 361 NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 361 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
.+++++|++++.... +..++++.|++++||.+.||+.|+..+++++||+++. +++++++++++|+++++
T Consensus 352 ~~~~~~~v~~~~~~~-----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 352 EGTYLVWLDFSAYAI-----AQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVAT-PKNTVQEALSRIISVFG 420 (421)
T ss_dssp SBSSEEEEECGGGTC-----CTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHC-
T ss_pred CeeEEEEEeccccCC-----CHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 999999999875211 2457888888777999999999976667899999997 89999999999998865
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-44 Score=348.86 Aligned_cols=330 Identities=17% Similarity=0.243 Sum_probs=276.3
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.++|+|+.++|+++ ++.+.+.+.+... ....|++ .+..++|++++++++ +++++|++|
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~y~~-~~~~~lr~~la~~~~--------~~~~~v~~~ 90 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANSSV------------ETEIYPD-GWASSLRKEVADFYQ--------LEEEELIFT 90 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTCBS------------CCCBC-----CHHHHHHHHHHHT--------CCGGGEEEE
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHH------------HhhcCCC-cchHHHHHHHHHHhC--------CChhhEEEe
Confidence 57899999999885 4667776665431 2456754 478999999999986 578999999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+|+++++..++.+++++||+|+++.|+|..+...++. .|++++.+|+++ ++.+|++++++.+++ ++++|++
T Consensus 91 ~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~-~g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~ 161 (363)
T 3ffh_A 91 AGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALI-EGAEVREIPLLQ--DGEHDLEGMLNAIDE------KTTIVWI 161 (363)
T ss_dssp SSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHH-HTCEEEEEECCT--TSCCCHHHHHHHCCT------TEEEEEE
T ss_pred CCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHHH-cCCEEEEecCCC--CCCcCHHHHHHhccc------CCCEEEE
Confidence 9999999999999999999999999999999999885 899999999875 467999999998864 7899999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
++|+||||.+++.+++.+|++.|++ |+++|+||+|+++.+ +.. .+....... .+++++++|+||.+|++|+|
T Consensus 162 ~~p~nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~-~~~~~~~~~-----~~~~i~~~s~sK~~g~~G~r 233 (363)
T 3ffh_A 162 CNPNNPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQP-EKHEKLVRT-----YKNLIITRTFSKIYGLASAR 233 (363)
T ss_dssp ESSCTTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCC-CCCGGGGGT-----CTTEEEEEESSSTTCCSSCC
T ss_pred eCCCCCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccc-cCHHHHhhc-----CCCEEEEeechhhhcCchhc
Confidence 9999999999999999999998887 999999999998877 432 222223222 57899999999999999999
Q ss_pred eEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh-CCCeeecCCceEE
Q 046900 287 VGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS-AGIECLKGNAGLF 365 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~g~~ 365 (442)
+||+++ ++.+.+.++.....+..+++.|.++.+++++. +++++.++.++++++++.+.|++ .|+++.++.+ +|
T Consensus 234 ~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~-~~ 307 (363)
T 3ffh_A 234 VGYGIA-DKEIIRQLNIVRPPFNTTSIGQKLAIEAIKDQ----AFIGECRTSNANGIKQYEAFAKRFEKVKLYPANG-NF 307 (363)
T ss_dssp CEEEEE-CHHHHHHHHHTCCSCCCBHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCS-SE
T ss_pred eeeeec-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCC-eE
Confidence 999999 67788888777777888999999999999864 45778889999999999999999 6888876665 57
Q ss_pred EEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 366 CWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
+|++++. +..++++.|.++ ||.+.||+.|+. ++++||+++ +++++++++++|++++
T Consensus 308 ~~~~~~~--------~~~~~~~~l~~~-gi~v~~g~~~~~--~~~iRis~~--~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 308 VLIDLGI--------EAGTIFSYLEKN-GYITRSGAALGF--PTAVRITIG--KEEDNSAVIALLEKLL 363 (363)
T ss_dssp EEEECSS--------CHHHHHHHHHHT-TEECEETTTTTC--TTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred EEEECCC--------CHHHHHHHHHHC-CeEEEeCccCCC--CCeEEEECC--CHHHHHHHHHHHHHhC
Confidence 8999875 267888888776 999999999864 689999998 5889999999998763
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-45 Score=360.78 Aligned_cols=355 Identities=15% Similarity=0.143 Sum_probs=272.3
Q ss_pred ceeeeeccccc---ccHH-HHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEE
Q 046900 49 GVIQMGLAENQ---VSFD-LLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 49 ~~i~l~~~~n~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 124 (442)
++|+|+.++++ ++.+ .+.+.+.+.. .. .......+|++..|.++||+++|+|++ +++++|+
T Consensus 33 ~~i~l~~g~~~~~~~~~~~~~~~a~~~~~---~~----~~~~~~~~Y~~~~G~~~lr~~ia~~~~--------~~~~~i~ 97 (422)
T 3d6k_A 33 LSLDLTRGKPSAEQLDLSNDLLSLPGGDF---RT----KDGVDCRNYGGLLGIADIRELWAEALG--------LPADLVV 97 (422)
T ss_dssp CCEECCCCSCCHHHHHTTGGGGGCSTTCC---BC----TTCCBTTSSCCSSCCHHHHHHHHHHHT--------CCGGGEE
T ss_pred CeEeCCCCCCChhhCCCcHHHHHHHHHHH---hh----ccchhhhCCCCCCCCHHHHHHHHHHhC--------CChhHEE
Confidence 47999999886 3321 2222221110 00 000134589999999999999999984 6789999
Q ss_pred EecChHHHH--HHHHHhhcCC------------CCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHH
Q 046900 125 VTAGATAAN--ELLTFILADP------------GDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAA 190 (442)
Q Consensus 125 ~t~G~~~ai--~~~~~~l~~~------------gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~ 190 (442)
+|+|+++++ .+++.++..+ +|+|++++|+|+.+...++. .|++++.+|+++++ +|++.|++.
T Consensus 98 ~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~-~g~~~~~v~~~~~g---~d~~~l~~~ 173 (422)
T 3d6k_A 98 AQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEH-FGFEMINVPMTDEG---PDMGVVREL 173 (422)
T ss_dssp ECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHH-HTCEEEEEEEETTE---ECHHHHHHH
T ss_pred EecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHH-cCCEEEecCCCCCC---CCHHHHHHH
Confidence 999999997 6777888665 34799999999999999985 89999999998643 899999998
Q ss_pred HHHHHhcCCceeEEE-EeCCCCCCCcCCCHHHHHHHHHHHH-hcCcEEEEeccCCc--CCCCCCCcccHHHHHhhhcCCC
Q 046900 191 YKEAESKDMRVRGVL-ITNPSNPLGATIQRSVLEELLDFAT-RKNIHLVSDEIYSG--SAFSSSEFVSIAEILEARQYKD 266 (442)
Q Consensus 191 l~~~~~~~~~~~~v~-l~~P~NPtG~~~~~~~l~~l~~~~~-~~~~~vi~De~y~~--~~~~~~~~~s~~~~~~~~~~~~ 266 (442)
+++ .++++|+ +++||||||.+++.+++++|+++|+ +++++||+||+|.+ +.+++..+.++.++.... +.
T Consensus 174 l~~-----~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~--~~ 246 (422)
T 3d6k_A 174 VKD-----PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAA--GN 246 (422)
T ss_dssp HTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT--TC
T ss_pred Hhc-----CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhcc--CC
Confidence 853 2678887 6899999999999999999999999 99999999999986 444433455665553110 12
Q ss_pred CCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 046900 267 SERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQ 344 (442)
Q Consensus 267 ~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 344 (442)
.+++++++||||. +++|+|+||++++ +.+.+.+...... +.+++++|.++..++++.+...+++++.++.++++++
T Consensus 247 ~~~~i~~~S~SK~-~~~GlriG~~~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 324 (422)
T 3d6k_A 247 PNRFWFMSSTSKI-THAGSGVSFFASS-KENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFE 324 (422)
T ss_dssp TTCEEEEEESTTT-SCTTSSCEEEECC-HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEcChhhh-cCcccceEEEEeC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHH
Confidence 4789999999999 5799999999994 6666666554332 5678999999999999833336788889999999999
Q ss_pred HHHHHHHh----CC-CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeC-CCCCCC---CCCCEEEEEe
Q 046900 345 MIIEGLRS----AG-IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISP-GSSCHC---SEPGWFRVCF 415 (442)
Q Consensus 345 ~l~~~L~~----~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~p-g~~f~~---~~~~~iRls~ 415 (442)
.+.+.|.+ .| +.+..|.+|+|+|++++.. +...+...+ +++||.+.| |..|.. ..++++|||+
T Consensus 325 ~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-------~~~~~~~~l-~~~gV~v~~~g~~f~~~~~~~~~~iRis~ 396 (422)
T 3d6k_A 325 RVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG-------TASRVVELA-KEAGIALTGAGSSFPLHNDPNNENIRLAP 396 (422)
T ss_dssp HHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT-------CHHHHHHHH-HHTTEECCCTTTTSGGGCCTTSCEEEECC
T ss_pred HHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC-------CHHHHHHHH-HHCCeEEEcCccccCCCCCCCCCeEEEec
Confidence 99888865 33 6777788999999999753 144566655 455999999 455641 1357999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 416 ANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 416 ~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
+..+++++++++++|++++++...
T Consensus 397 ~~~~~e~i~~~~~~l~~~l~~~~~ 420 (422)
T 3d6k_A 397 SLPPVAELEVAMDGFATCVLMAAL 420 (422)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 844899999999999999887643
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-45 Score=356.38 Aligned_cols=342 Identities=25% Similarity=0.363 Sum_probs=277.5
Q ss_pred Cceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.++|||+.+.+.++ ++.+.+.+.+.... ...|++..|..++|++++++++ +++++|++|
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~------------~~~y~~~~~~~~l~~~la~~~~--------~~~~~v~~~ 84 (381)
T 1v2d_A 25 LGAVNLGQGFPSNPPPPFLLEAVRRALGR------------QDQYAPPAGLPALREALAEEFA--------VEPESVVVT 84 (381)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHHHHTTT------------SCSCCCTTCCHHHHHHHHHHHT--------SCGGGEEEE
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHHH------------hcCCCCCCCCHHHHHHHHHhcC--------CChhhEEEc
Confidence 36799999988764 45556555544321 2358877789999999999965 568899999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC--CCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD--SSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~--~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+++++.+++.+++++||+|+++.|+|+.+...++. .|++++.++++ ++ ++.+|++.|++.+.+ ++++|
T Consensus 85 ~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~-~~~~d~~~l~~~l~~------~~~~v 156 (381)
T 1v2d_A 85 SGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFL-AGAKARLVRLDLTPE-GFRLDLSALEKALTP------RTRAL 156 (381)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-TTCEEEEEECEEETT-EEECCHHHHHTTCCT------TEEEE
T ss_pred CChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHH-cCCEEEEEeCCCCCc-cCCcCHHHHHHhcCc------CCEEE
Confidence 9999999999999999999999999999999998884 89999999986 32 377999999988753 78999
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++++|+||||.+++.+++++|+++|++||+++|+||+|+++.+ +....++..+ . .++++++.|+||.+|++|
T Consensus 157 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~-~------~~~~~~~~s~sK~~~~~G 228 (381)
T 1v2d_A 157 LLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREF-A------PERTFTVGSAGKRLEATG 228 (381)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHH-C------TTTEEEEEEHHHHTTCGG
T ss_pred EECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHh-c------CCCEEEEeechhhcCCcc
Confidence 9999999999999999999999999999999999999999887 5445566655 2 378899999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc
Q 046900 285 FRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA 362 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 362 (442)
+|+||++++ +.+.+.++.... .+..+++.|.++..+++...+ .+++++.++.++++++++.+.|++.|+++..+.+
T Consensus 229 ~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 306 (381)
T 1v2d_A 229 YRVGWIVGP-KEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEG 306 (381)
T ss_dssp GCCEEEECC-TTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSB
T ss_pred cceEEEEeC-HHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCccc-HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCc
Confidence 999999995 445555543322 456788899988888874321 3467788899999999999999998999988888
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC--CCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC--SEPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~--~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
|+|+|++++.. + ...+++++||.+.||+.|+. ..++++||+++. +++++++++++|++++++.+.
T Consensus 307 ~~~~~~~~~~~----------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~-~~~~i~~~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 307 TYFLMAELPGW----------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVNSPRE 373 (381)
T ss_dssp SSEEEEECTTC----------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC-----
T ss_pred ceEEEEecChH----------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhhccc
Confidence 99999998752 1 33444556999999998864 246799999998 999999999999999887654
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-44 Score=347.85 Aligned_cols=322 Identities=18% Similarity=0.292 Sum_probs=263.9
Q ss_pred CceeeeecccccccHH-HHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVSFD-LLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.++|+|+.++|+++++ .+ .. ....+|++. +..++|+++|++++ +++++|++|
T Consensus 29 ~~~i~l~~~~~~~~~~~~v------a~------------~~~~~Y~~~-~~~~lr~~la~~~~--------~~~~~v~~~ 81 (356)
T 1fg7_A 29 NGDVWLNANEYPTAVEFQL------TQ------------QTLNRYPEC-QPKAVIENYAQYAG--------VKPEQVLVS 81 (356)
T ss_dssp TCSEECSSCCCSSCCCCCC------CC------------CCTTSCCCS-SCHHHHHHHHHHHT--------SCGGGEEEE
T ss_pred CceEEeeCCCCCCCCCHhH------hh------------hhhccCCCc-cHHHHHHHHHHHhC--------CChHHEEEc
Confidence 4689999999988642 11 10 134679876 48999999999984 578899999
Q ss_pred cChHHHHHHHHHhhcCCC-CeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 127 AGATAANELLTFILADPG-DALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~g-d~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
+|+++++..++++++++| |+|+++.|+|+.+...++. .|++++.+|+++ +|.+|++++++.++ ++++++
T Consensus 82 ~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~~-~g~~~~~v~~~~--~~~~d~~~l~~~i~-------~~~~v~ 151 (356)
T 1fg7_A 82 RGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAET-IGVECRTVPTLD--NWQLDLQGISDKLD-------GVKVVY 151 (356)
T ss_dssp SHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHH-HTCEEEECCCCT--TSCCCHHHHHTSCT-------TEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHH-cCCEEEEeeCCC--CCCCCHHHHHHHhc-------CCCEEE
Confidence 999999999999999999 9999999999999999885 899999999874 57799999987663 578999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++||||||.+++.+++++|+++|+ +++++|+||+|.++.. + .++.++.. ..+++++++||||.||++|+
T Consensus 152 l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~-~---~~~~~~~~-----~~~~~i~~~s~sK~~g~~G~ 221 (356)
T 1fg7_A 152 VCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCP-Q---ASLAGWLA-----EYPHLAILRTLSKAFALAGL 221 (356)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSG-G---GCSGGGTT-----TCTTEEEEEESSSTTCCGGG
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcC-C---CcHHHHHh-----hCCCEEEEecchHhhcCchh
Confidence 9999999999999999999999999 9999999999998652 1 22222222 14789999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCceE
Q 046900 286 RVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAG-IECLKGNAGL 364 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~ 364 (442)
|+||+++ ++.+.+.++.....+.+++++|.++.+++++.++ +++++.++.++++++++.+.|++.+ +....+.+++
T Consensus 222 r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 298 (356)
T 1fg7_A 222 RCGFTLA-NEEVINLLMKVIAPYPLSTPVADIAAQALSPQGI--VAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETN 298 (356)
T ss_dssp CCEEEEE-CHHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHH--HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSS
T ss_pred hhEEEEe-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCccH--HHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCe
Confidence 9999999 6777777777666678899999999999986443 2478888999999999999999875 2233455677
Q ss_pred EEEEecCCcccccChhhHHHHHHHHHHcCcEEEeC-CCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHH
Q 046900 365 FCWMNLSPLLEEQTREGELALWDSMLHEVKLNISP-GSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~p-g~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~ 433 (442)
|+|++++. ..++++.|.++ ||.++| |+.|+. ++++||+++. ++++++++++|+++
T Consensus 299 ~~~~~~~~---------~~~l~~~L~~~-gI~v~~~g~~~~~--~~~iRis~~~--~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 299 YILARFKA---------SSAVFKSLWDQ-GIILRDQNKQPSL--SGCLRITVGT--REESQRVIDALRAE 354 (356)
T ss_dssp EEEEEETT---------HHHHHHHHHHT-TEECEECTTSTTC--TTEEEEECCC--HHHHHHHHHHHHTC
T ss_pred EEEEECCC---------HHHHHHHHHHC-CEEEEECCCCCCC--CCeEEEEeCC--HHHHHHHHHHHHhh
Confidence 99999862 56788888555 999999 887763 4699999985 78899999998754
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=358.81 Aligned_cols=345 Identities=15% Similarity=0.236 Sum_probs=270.1
Q ss_pred Cceeeeecc---cccc---cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 48 SGVIQMGLA---ENQV---SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 48 ~~~i~l~~~---~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
+++|||+.+ ++.. +++.+.+.+.+.... .....|++..|.+++|+++++++....+ ..++++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~~ 116 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEA----------GLPRGYLPIDGIAAYDASVQKLLLGDDS--PLIAAG 116 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT----------CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHTT
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhcc----------CCCCCCCCCCCcHHHHHHHHHHhcCCCc--cccccC
Confidence 478999998 3332 225555555443211 1235798889999999999999975432 223688
Q ss_pred --cEEEecChHHHHHHHH--HhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhc
Q 046900 122 --RIVVTAGATAANELLT--FILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESK 197 (442)
Q Consensus 122 --~i~~t~G~~~ai~~~~--~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 197 (442)
+|++|+|+++++.+++ .+++++||.|++++|+|..+...++. .|++++.+|+.++.++.+|++.|++.+++.
T Consensus 117 ~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~--- 192 (420)
T 4f4e_A 117 RVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDM-AGFEVVAYPYYDAKTNGVNFDGMLAALNGY--- 192 (420)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHH-TTCCEEEEECEETTTTEECHHHHHHHHTTC---
T ss_pred ceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHH-cCCeEEEeeeeccccCccCHHHHHHHHHhC---
Confidence 9999999999999994 46689999999999999999999985 999999999844456889999999998732
Q ss_pred CCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC-CcccHHHHHhhhcCCCCCcEEEEecC
Q 046900 198 DMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS-EFVSIAEILEARQYKDSERVHIVYSL 276 (442)
Q Consensus 198 ~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~S~ 276 (442)
..+++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++. ...++..+... .+++++++||
T Consensus 193 ~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~S~ 267 (420)
T 4f4e_A 193 EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAA-----NLNVFVSSSF 267 (420)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHT-----TCCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhc-----CCCEEEEEeC
Confidence 23678899999999999999999999999999999999999999999998752 34555555432 5889999999
Q ss_pred cccCCCCCceeEEEee--cCHHHHHH----HHHc--cccCCCcHHHHHHHHHHhcCchhH---HHHHHHHHHHHHHHHHH
Q 046900 277 SKDLGLPGFRVGTIYS--YNDKVVTT----ARRM--SSFTLISSQTQYLLASMLSNKKFT---ENYIKTNRERLQKRYQM 345 (442)
Q Consensus 277 SK~~g~~G~RiG~i~~--~~~~~~~~----~~~~--~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~ 345 (442)
||.||++|+|+||+++ +++.+.+. ++.. ......+.+.|.+++.++.+..+. +++++++++.++++++.
T Consensus 268 SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (420)
T 4f4e_A 268 SKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNG 347 (420)
T ss_dssp TTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999864 44544332 2222 223456788999999999876421 46688899999999999
Q ss_pred HHHHHHhC----CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHH
Q 046900 346 IIEGLRSA----GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQ 421 (442)
Q Consensus 346 l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e 421 (442)
+.+.|++. |+++..+++|+|+|+.++. .. +..+++++||.+.|+ .||+++.++++
T Consensus 348 l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~-~~~~l~~~gI~v~~~----------~Ris~~~~~~~ 406 (420)
T 4f4e_A 348 LVERLKAAGIERDFSFINAQRGMFSYSGLTS----------AQ-VDRLREEFGIYAVST----------GRICVAALNTR 406 (420)
T ss_dssp HHHHHHHTTCSSCCTHHHHSCSSEEECCCCH----------HH-HHHHHHHHCEECCTT----------SEEEGGGCCTT
T ss_pred HHHHHHhcCCCCCceeECCCccEEEEeCCCH----------HH-HHHHHHhCCEEecCC----------CeEEEecCCHH
Confidence 99999986 7788889999999987742 23 344445559999984 29999876788
Q ss_pred HHHHHHHHHHHHH
Q 046900 422 TLEVALKRIHNFM 434 (442)
Q Consensus 422 ~i~~~l~~l~~~l 434 (442)
++++++++|++++
T Consensus 407 ~i~~~~~~l~~~l 419 (420)
T 4f4e_A 407 NLDVVANAIAAVL 419 (420)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8999999999876
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-45 Score=357.86 Aligned_cols=345 Identities=15% Similarity=0.232 Sum_probs=268.1
Q ss_pred Cceeeeecccc-cc-c----HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 48 SGVIQMGLAEN-QV-S----FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 48 ~~~i~l~~~~n-~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
+++|+|+++.+ .. + .+.+.+.+...... .....|++..|.+++|+++|+++++.++ ..++++
T Consensus 28 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~----------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~ 95 (401)
T 7aat_A 28 SKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK----------KMDKEYLPIAGLADFTRASAELALGENS--EAFKSG 95 (401)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT----------TCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHTT
T ss_pred CCceeeeeeeEECCCCCEechHHHHHHHHHhccc----------ccccCCCCCCCCHHHHHHHHHHhcCCCc--cccccC
Confidence 35789998874 22 1 13455444332110 1245798888999999999999987655 456799
Q ss_pred cEEE--ecChHHHHHHHHHhhc---CCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHh
Q 046900 122 RIVV--TAGATAANELLTFILA---DPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAES 196 (442)
Q Consensus 122 ~i~~--t~G~~~ai~~~~~~l~---~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~ 196 (442)
+|++ |+|+++++.+++.++. ++||.|++++|+|..+...++. .|++++.+|++.+.++.+|++.+++.+++.
T Consensus 96 ~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-- 172 (401)
T 7aat_A 96 RYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRD-AGLQLQAYRYYDPKTCSLDFTGAMEDISKI-- 172 (401)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHH-TTCEEEEEECEETTTTEECHHHHHHHHTTS--
T ss_pred ceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHH-cCCeeEeeeeeccccCccCHHHHHHHHHhC--
Confidence 9977 9999999999887664 8999999999999999999985 999999999875556889999988888642
Q ss_pred cCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC--CcccHHHHHhhhcCCCCCcEEEEe
Q 046900 197 KDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS--EFVSIAEILEARQYKDSERVHIVY 274 (442)
Q Consensus 197 ~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~--~~~s~~~~~~~~~~~~~~~vi~~~ 274 (442)
..+++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+... .+++++++
T Consensus 173 -~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~ 246 (401)
T 7aat_A 173 -PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQ-----GIDVVLSQ 246 (401)
T ss_dssp -CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT-----TCCCEEEE
T ss_pred -CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhc-----CCcEEEEe
Confidence 23678999999999999999999999999999999999999999999887653 12334443332 47899999
Q ss_pred cCcccCCCCCceeEEEee--cCHH----HHHHHHHccc--cCCCcHHHHHHHHHHhcCchhH---HHHHHHHHHHHHHHH
Q 046900 275 SLSKDLGLPGFRVGTIYS--YNDK----VVTTARRMSS--FTLISSQTQYLLASMLSNKKFT---ENYIKTNRERLQKRY 343 (442)
Q Consensus 275 S~SK~~g~~G~RiG~i~~--~~~~----~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~~ 343 (442)
||||.||++|+|+||+++ .++. +...++.... ....+.+.|.+++.++.++.+. .+++++.+++++++|
T Consensus 247 S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 326 (401)
T 7aat_A 247 SYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMR 326 (401)
T ss_dssp ECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 2444 3333333222 2445677888888888876432 456788899999999
Q ss_pred HHHHHHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCC
Q 046900 344 QMIIEGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMS 419 (442)
Q Consensus 344 ~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~ 419 (442)
+++.+.|++.| +++..|++|+|+|++++. +.+..+++++||.+.|+ +||+++..+
T Consensus 327 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ll~~~gi~v~~~----------~Ris~~~~~ 385 (401)
T 7aat_A 327 TQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKP-----------EQVERLTKEFSIYMTKD----------GRISVAGVA 385 (401)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGCC
T ss_pred HHHHHHHHhcCCCCCCceecCCcceEEecCCCH-----------HHHHHHHHhCCEeccCC----------CeEEeccCC
Confidence 99999999875 667789999999987642 33466666669999763 699998667
Q ss_pred HHHHHHHHHHHHHHH
Q 046900 420 EQTLEVALKRIHNFM 434 (442)
Q Consensus 420 ~e~i~~~l~~l~~~l 434 (442)
++++++++++|++++
T Consensus 386 ~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 386 SSNVGYLAHAIHQVT 400 (401)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHh
Confidence 777999999999875
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-45 Score=362.34 Aligned_cols=351 Identities=21% Similarity=0.275 Sum_probs=266.2
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
..++|+|+.+++.++ ++.+.+.+.+....... ......|++..|..+||+++|+++. +| . +++++|++
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~------~~~~~~y~~~~g~~~lr~~la~~l~--~g--~-~~~~~v~~ 100 (400)
T 3asa_A 32 QHTVINLSIGDTTQPLNASVAEAFASSIARLSS------PTTCRGYGPDFGLPALRQKLSEDFY--RG--F-VDAKEIFI 100 (400)
T ss_dssp TSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTS------SSCCCCCCCTTCCHHHHHHHHHTTS--TT--S-SCGGGEEE
T ss_pred CCceEeccCCCCCCCCCHHHHHHHHHHHhcccc------cccccCCCCCCCCHHHHHHHHHHHH--cC--C-CCHHHEEE
Confidence 457899999987653 34444444332110000 0123568777899999999999964 22 3 57899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcE-EEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIK-IVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~-v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
|+|+++++..++.. +++||.|+++.|+|+.+...++. .|++ ++.+|+++++++..|++.+ .++++|
T Consensus 101 ~~G~~~al~~~~~~-~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~v 167 (400)
T 3asa_A 101 SDGAKVDLFRLLSF-FGPNQTVAIQDPSYPAYLDIARL-TGAKEIIALPCLQENAFFPEFPED-----------THIDIL 167 (400)
T ss_dssp ESCHHHHHHHHHHH-HCSSCEEEEEESCCHHHHHHHHH-TTCSEEEEEECCGGGTTCCCCCTT-----------CCCSEE
T ss_pred ccChHHHHHHHHHH-cCCCCEEEECCCCcHHHHHHHHH-cCCcceEecccchhcCcccChhhc-----------cCccEE
Confidence 99999999997654 47999999999999999988884 8998 9999987655666554321 278899
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++++|+||||.++|.+++++|+++|+++|++||+||+|+++.+++..+.++..+... .+++++++||||.||++|
T Consensus 168 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~s~sK~~g~~G 242 (400)
T 3asa_A 168 CLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDA-----RFCAIEINSFSKPLGFAG 242 (400)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTG-----GGTEEEEEECCGGGTTTT
T ss_pred EEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCC-----CCceEEEecchhhcCCcc
Confidence 999999999999999999999999999999999999999887765433344433211 257899999999999999
Q ss_pred ceeEEEeecCHH-------HHHHHHH--ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 046900 285 FRVGTIYSYNDK-------VVTTARR--MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGI 355 (442)
Q Consensus 285 ~RiG~i~~~~~~-------~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 355 (442)
+|+||++++++. +...... ...++..+++.|.++.+++++. ++++.++.++++++++.+.|++.|+
T Consensus 243 lriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~l~~~L~~~g~ 317 (400)
T 3asa_A 243 IRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL-----PQLEAIHYYRENSDLLRKALLATGF 317 (400)
T ss_dssp CCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999996554 3333322 1223467899999998888754 3567788899999999999998899
Q ss_pred eeecCCceEEEEEe-cCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 356 ECLKGNAGLFCWMN-LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 356 ~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
++..+.+|+|+|++ ++.... +.+++..|++++||.+.||+.|+...++++||++.. +++++++++++|++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~ 390 (400)
T 3asa_A 318 EVFGGEHAPYLWVKPTQANIS------DRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLG-KREDILAACERLQMAP 390 (400)
T ss_dssp EEEECSSSSEEEEECCCTTCC------TTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCS-CHHHHHHHHHHHHC--
T ss_pred eeeCCCCceEEEEeccCCCCC------HHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeC-CHHHHHHHHHHHHHHH
Confidence 98888888999999 765322 346777887766999999998875456899999765 8999999999999998
Q ss_pred HHHH
Q 046900 435 QKRE 438 (442)
Q Consensus 435 ~~~~ 438 (442)
++.+
T Consensus 391 ~~~~ 394 (400)
T 3asa_A 391 ALQS 394 (400)
T ss_dssp ----
T ss_pred Hhhh
Confidence 8754
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-43 Score=342.33 Aligned_cols=339 Identities=18% Similarity=0.271 Sum_probs=278.4
Q ss_pred CCCCCCCCCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCcc
Q 046900 40 PYEESTNPSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKF 118 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~ 118 (442)
.|.+.. +.++|+|+.++|+++ ++.+.+.+.+.... .....|++ .+..++|+++|++++ +
T Consensus 23 ~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----------~~~~~y~~-~~~~~l~~~la~~~g--------~ 82 (367)
T 3euc_A 23 AYHVPD-SHGLVKLDAMENPYRLPPALRSELAARLGE----------VALNRYPV-PSSEALRAKLKEVMQ--------V 82 (367)
T ss_dssp CSSCCC-CTTCEECCSSCCCCCCCHHHHHHHHHHHHH----------HHTTCSCC-CCHHHHHHHHHHHHT--------C
T ss_pred CCCCCC-CCCeeEccCCCCCCCCCHHHHHHHHHHhhh----------hhhhcCCC-CcHHHHHHHHHHHhC--------C
Confidence 344443 568899999999874 35555554443210 02346766 488999999999985 3
Q ss_pred -CCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhc
Q 046900 119 -DLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESK 197 (442)
Q Consensus 119 -~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 197 (442)
++++|++|+|+++++.+++.+++++||+|+++.|+|..+...++. .|++++.+|+++ +|.+|++.|++.+++.
T Consensus 83 ~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~g~~~~~v~~~~--~~~~d~~~l~~~l~~~--- 156 (367)
T 3euc_A 83 PAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQF-AGLEFVGVPLRA--DFTLDRGAMLAAMAEH--- 156 (367)
T ss_dssp CTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHHHHT-TTCEEEEEECCT--TSCCCHHHHHHHHHHH---
T ss_pred CCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHHH-cCCeEEEecCCC--CCCCCHHHHHHHhhcc---
Confidence 678999999999999999999999999999999999999998884 999999999876 5679999999999863
Q ss_pred CCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhc--CcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEec
Q 046900 198 DMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK--NIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275 (442)
Q Consensus 198 ~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~--~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S 275 (442)
++++|++++|+||||.+++.+++++|+++|++| |+++|+||+|+++...+ ..+. + . ..+++++++|
T Consensus 157 --~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~--~~~~--~-~-----~~~~~i~~~s 224 (367)
T 3euc_A 157 --QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES--WMSR--L-T-----DFGNLLVMRT 224 (367)
T ss_dssp --CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC--SGGG--G-G-----TCTTEEEEEE
T ss_pred --CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc--hHHH--H-h-----hCCCEEEEec
Confidence 688999999999999999999999999999999 99999999999866332 2221 1 1 2478899999
Q ss_pred CcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Q 046900 276 LSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-G 354 (442)
Q Consensus 276 ~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 354 (442)
|||. +++|+|+||+++ ++.+.+.+......+..+++.|.++..+++. .+++++.++.++++++++.+.|+++ |
T Consensus 225 ~sK~-~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~g 298 (367)
T 3euc_A 225 VSKL-GLAGIRLGYVAG-DPQWLEQLDKVRPPYNVNVLTEATALFALEH----VAVLDEQAAQLRAERSRVAEGMAAHGG 298 (367)
T ss_dssp CCCT-TSCSCCEEEEEE-CHHHHHHHGGGCCSSCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred chhh-cccccCceeeee-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999 889999999999 6777777777776777899999999999987 3457788889999999999999988 8
Q ss_pred CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 355 IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 355 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
+++.+ .+|+|+|++++. ..++.+.|.++ ||.+.||+.|+...++++||+++ +++++++++++|++++
T Consensus 299 ~~~~~-~~~~~~~~~~~~---------~~~l~~~l~~~-gi~v~~~~~~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 299 VTVFP-SAANFLLARVPD---------AAQTFDRLLAR-KVLIKNVSKMHPLLANCLRVTVS--TPEENAQFLEAFAASL 365 (367)
T ss_dssp CEECC-CSSSEEEEECSC---------HHHHHHHHHTT-TEECEECGGGCGGGTTEEEEECC--CHHHHHHHHHHHHHHT
T ss_pred cEECC-CCCeEEEEECCC---------HHHHHHHHHHC-CeEEEECCccCCCCCCEEEEecC--CHHHHHHHHHHHHHHh
Confidence 88554 556689999872 56778877554 99999999887656789999998 5888999999999876
Q ss_pred H
Q 046900 435 Q 435 (442)
Q Consensus 435 ~ 435 (442)
+
T Consensus 366 ~ 366 (367)
T 3euc_A 366 Q 366 (367)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=368.36 Aligned_cols=358 Identities=18% Similarity=0.309 Sum_probs=279.3
Q ss_pred ceeeeecccccccHH-HHHHHHHhCCCCcccCCCCCCCCcccccC-CCcchHHHHHHHHHHHHHHhCCCCccC-CCcEEE
Q 046900 49 GVIQMGLAENQVSFD-LLEEYLEQQPEASTWGKGAPGFRENALFQ-DYHGLKSFRQAMASFMEQIRGGRAKFD-LNRIVV 125 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~-~~~i~~ 125 (442)
++|+|+.+.+.++++ .+....+... ...|+ +..|.+++|+++++++.+.++.++.++ +++|++
T Consensus 104 ~~i~l~~g~~~~~~~~~v~a~~~~~~--------------~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~ 169 (533)
T 3f6t_A 104 DAVNYCHTELGLNRDKVVAEWVNGAV--------------ANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFP 169 (533)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHH--------------TCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEE
T ss_pred hheeccCCCCCcCCcHHHHHHHHHHH--------------hCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEE
Confidence 568899888777653 3343333321 02344 667999999999999966533112334 479999
Q ss_pred ecChHHHHHHHHHh-----hcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC--CCCCcCCHHHHHHHHHHHHhcC
Q 046900 126 TAGATAANELLTFI-----LADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS--SNNFQITPQALEAAYKEAESKD 198 (442)
Q Consensus 126 t~G~~~ai~~~~~~-----l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~--~~~~~~d~~~l~~~l~~~~~~~ 198 (442)
|+|+++++.+++.+ ++++||+|+++.|+|..+...+.. .|++++.++++. +++|.+|++.|++.+.+
T Consensus 170 t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~----- 243 (533)
T 3f6t_A 170 TEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPEL-KDYELVEVDLHSYEKNDWEIEPNEIEKLKDP----- 243 (533)
T ss_dssp EEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGG-GGSEEEEECCCEETTTTSEECHHHHHHHSCT-----
T ss_pred ECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHH-cCCeEEEEEecCCcccCCCCCHHHHHHHhCC-----
Confidence 99999999999998 789999999999999999998885 899999998864 56789999999998754
Q ss_pred CceeEEEEeCCCCCCCcCCCHHHHHHHHHHHH-hcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCc
Q 046900 199 MRVRGVLITNPSNPLGATIQRSVLEELLDFAT-RKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLS 277 (442)
Q Consensus 199 ~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~-~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~S 277 (442)
++++|++++|+||||.+++.+++++|+++|+ +|+++||+||+|+++.++ +.++.... .+++++++|||
T Consensus 244 -~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~---~~~~~~~~-------~~~~i~~~S~S 312 (533)
T 3f6t_A 244 -SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN---FKSIYSVV-------PYNTMLVYSYS 312 (533)
T ss_dssp -TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT---CCCHHHHS-------GGGEEEEEESH
T ss_pred -CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC---ccCHhhcC-------CCCEEEEecCc
Confidence 8899999999999999999999999999999 689999999999988764 33555443 26899999999
Q ss_pred ccCCCCCceeEEEeecCHHHHHHH------------------------------------HHcc--ccCCCcHHHHHH--
Q 046900 278 KDLGLPGFRVGTIYSYNDKVVTTA------------------------------------RRMS--SFTLISSQTQYL-- 317 (442)
Q Consensus 278 K~~g~~G~RiG~i~~~~~~~~~~~------------------------------------~~~~--~~~~~s~~~q~~-- 317 (442)
|.+|++|+|+||++++++.+.+.+ ++.. ...+.+++.|.+
T Consensus 313 K~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a 392 (533)
T 3f6t_A 313 KLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEA 392 (533)
T ss_dssp HHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHH
T ss_pred ccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHH
Confidence 999999999999999765222211 1111 124567788887
Q ss_pred --HHHHhcC----chhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCccccc-C---------hhh
Q 046900 318 --LASMLSN----KKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQ-T---------REG 381 (442)
Q Consensus 318 --~~~~l~~----~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~-~---------~~~ 381 (442)
+...+.. ..+ .++++++++.++++++.+.+.|. .++.+..+++++|+|++++...... . ..+
T Consensus 393 ~~a~~~L~~~~g~~~~-~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~ 470 (533)
T 3f6t_A 393 LFSMTHLLTSTNGGSD-DPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFE 470 (533)
T ss_dssp HHHHHHHTTCBGGGTB-CHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCC
T ss_pred HHHHHHHhhhccccch-HHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCC
Confidence 3444541 122 56788999999999999999997 7888888999999999986421100 0 002
Q ss_pred HHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 382 ELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 382 ~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
+.+++..+++++||.+.||+.|+. .++++|||++.++++++++++++|+++++++.++
T Consensus 471 ~~~~~~~ll~~~GV~v~pg~~f~~-~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~~~ 528 (533)
T 3f6t_A 471 QVDFLLKLAEKNGVVLVDGVGFGA-KPGELRVSQANLPTEDYALIGKQVLELLKEYYEE 528 (533)
T ss_dssp HHHHHHHHHHHTTSSSCTTEEECS-STTEEEEESSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEeCCcccCC-CCCEEEEEEeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888999999999985 4689999999778999999999999999887654
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-44 Score=348.14 Aligned_cols=313 Identities=21% Similarity=0.343 Sum_probs=269.0
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcE
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIK 168 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~ 168 (442)
..|++..|..+||+++++++. .+++++|++|+|+++++..++.+++++||+|+++.|+|..+...+.. .|++
T Consensus 57 ~~y~~~~g~~~l~~~la~~~~-------~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~-~g~~ 128 (375)
T 3op7_A 57 LNYGWIEGSPAFKKSVSQLYT-------GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKS-LGAE 128 (375)
T ss_dssp CSSCCTTCCHHHHHHHHTTSS-------SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHHH-TTCE
T ss_pred cCCCCCCChHHHHHHHHHHhc-------cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHH-cCCE
Confidence 568888899999999999873 26789999999999999999999999999999999999999988884 9999
Q ss_pred EEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCC
Q 046900 169 IVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS 248 (442)
Q Consensus 169 v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~ 248 (442)
++.++++.+++|.+|++.|++++++ ++++|++++|+||||.+++.+++++|+++|++||+++|+||+|+.+.++
T Consensus 129 ~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~ 202 (375)
T 3op7_A 129 VDLWQIEEENGWLPDLEKLRQLIRP------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSEL 202 (375)
T ss_dssp EEEEEEEGGGTTEECHHHHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSS
T ss_pred EEEEeccccCCCCCCHHHHHHhhcc------CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccc
Confidence 9999998777889999999998864 7899999999999999999999999999999999999999999998765
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCch
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKK 326 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~ 326 (442)
...++.+. .+++++++||||.+|++|+|+||+++ ++.+.+.++..... ...+++.|.++...++.
T Consensus 203 --~~~~~~~~--------~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 269 (375)
T 3op7_A 203 --DVPSIIEV--------YDKGIAVNSLSKTYSLPGIRIGWVAA-NHQVTDILRDYRDYTMICAGVFDDLVAQLALAH-- 269 (375)
T ss_dssp --CCCCHHHH--------CTTEEEEEESSSSSSCGGGCCEEEEC-CHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHT--
T ss_pred --CCCchhhh--------cCCEEEEeEChhhcCCcccceEEEEe-CHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhc--
Confidence 33444433 36789999999999999999999999 77787777655443 44577888888888874
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC
Q 046900 327 FTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC 405 (442)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~ 405 (442)
.++++++.++.++++++.+.+.|++. ++.+..+.+++++|+.++... +..+++..+++++||.+.||+.|+.
T Consensus 270 -~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ll~~~gi~v~~g~~~~~ 342 (375)
T 3op7_A 270 -YQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM------PMEDFCLQLLQEHGVLLVPGNRFER 342 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS------CHHHHHHHHHHHHCEECEEGGGGTC
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC------CHHHHHHHHHHhCCEEEeChhhhCC
Confidence 25567888899999999999999886 788888889989998887533 2678888887666999999998864
Q ss_pred CCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 406 SEPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 406 ~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
++++||+++. +.+++++++++|.+++++..
T Consensus 343 --~~~iRi~~~~-~~~~i~~~l~~l~~~l~~~~ 372 (375)
T 3op7_A 343 --DGYVRLGFAC-EQETLIKGLEKLSQFLRRFD 372 (375)
T ss_dssp --TTEEEECCCS-CHHHHHHHHHHHHHHHGGGC
T ss_pred --CCeEEEEecC-CHHHHHHHHHHHHHHHHHHh
Confidence 6899999997 67899999999999987654
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=344.03 Aligned_cols=336 Identities=17% Similarity=0.256 Sum_probs=267.7
Q ss_pred CCCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEE
Q 046900 46 NPSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 46 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 124 (442)
++.++|||+.++++++ ++.+.+.+.+... ....|++ .|..++|+++|++++ +++++|+
T Consensus 22 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~------------~~~~y~~-~~~~~l~~~la~~~~--------~~~~~v~ 80 (364)
T 1lc5_A 22 SPDQLLDFSANINPLGMPVSVKRALIDNLD------------CIERYPD-ADYFHLHQALARHHQ--------VPASWIL 80 (364)
T ss_dssp CGGGSEECSSCCCTTCCCHHHHHHHHHTGG------------GGGSCCC-TTCHHHHHHHHHHHT--------SCGGGEE
T ss_pred CccceEEeccccCCCCCCHHHHHHHHHHHH------------HhhcCCC-CCHHHHHHHHHHHHC--------cCHHHEE
Confidence 3457899999988763 4556666665431 1356865 478999999999984 5688999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++.+++.++ +||.|+++.|+|..+...++. .|++++.+|++++++|.+ ++.+.+.+. .+++++
T Consensus 81 ~~~g~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~-l~~~~~~~~------~~~~~v 150 (364)
T 1lc5_A 81 AGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQ-SGCEIRRWSLREADGWQL-TDAILEALT------PDLDCL 150 (364)
T ss_dssp EESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHHH-TTCEEEEEECCGGGTTCC-CTTHHHHCC------TTCCEE
T ss_pred ECCCHHHHHHHHHHHc--CCCeEEEeCCCcHHHHHHHHH-cCCeEEEEeCCcccccch-hHHHHHhcc------CCCCEE
Confidence 9999999999999998 779999999999999998884 899999999875445554 454444332 367889
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++++|+||||.+++.+++++|+++|++||+++|+||+|+++.+++.... .... ..+++++++|+||.+|++|
T Consensus 151 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~---~~~~-----~~~~~i~~~s~sK~~~~~G 222 (364)
T 1lc5_A 151 FLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFI---PALK-----DNPHIWVLRSLTKFYAIPG 222 (364)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSG---GGCT-----TCTTEEEEEESTTTTTCTT
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchh---hHhc-----cCCCEEEEEECchhhcCCc
Confidence 9999999999999999999999999999999999999998877532221 1111 1478899999999999999
Q ss_pred ceeEEEe-ecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCc
Q 046900 285 FRVGTIY-SYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNA 362 (442)
Q Consensus 285 ~RiG~i~-~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 362 (442)
+|+||++ + ++.+.+.++.....+..++++|.++.++++.. +++++.++.++++++++.+.|++. |+++.++.
T Consensus 223 ~r~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~- 296 (364)
T 1lc5_A 223 LRLGYLVNS-DDAAMARMRRQQMPWSVNALAALAGEVALQDS----AWQQATWHWLREEGARFYQALCQLPLLTVYPGR- 296 (364)
T ss_dssp TCCEEEECC-CHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCH----HHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCS-
T ss_pred cceEEEEEC-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCC-
Confidence 9999999 7 67777777766666778999999999999873 357888899999999999999987 88876555
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
|+|+|++++.. ..++++.|+++ ||.+.||+.|+...++++||+++. .++++++++.|+++++++
T Consensus 297 g~~~~~~~~~~--------~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~~--~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 297 ANYLLLRCERE--------DIDLQRRLLTQ-RILIRSCANYPGLDSRYYRVAIRS--AAQNERLLAALRNVLTGI 360 (364)
T ss_dssp SSEEEEEESCT--------TCCHHHHHHTT-TEECEECTTSTTCCTTEEEEECCC--HHHHHHHHHHHHHHC---
T ss_pred CeEEEEECCCc--------HHHHHHHHHHC-CcEEeeCcccCCCCCCEEEEEeCC--HHHHHHHHHHHHHHhhcc
Confidence 45788888641 23577777766 999999999875556899999975 777999999999887764
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-44 Score=351.69 Aligned_cols=345 Identities=16% Similarity=0.226 Sum_probs=269.9
Q ss_pred CCceeeeeccc---ccc--c-HHHHHHHHHh-CCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 47 PSGVIQMGLAE---NQV--S-FDLLEEYLEQ-QPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 47 ~~~~i~l~~~~---n~~--~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
.+++|||+.+. +.. + ++.+.+.+.+ .... .....|++..|..++|+++++++....+ ..++
T Consensus 25 ~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~----------~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~~ 92 (397)
T 3fsl_A 25 RSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP----------HGASLYLPMEGLNCYRHAIAPLLFGADH--PVLK 92 (397)
T ss_dssp CSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSC----------CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHH
T ss_pred CCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCc----------cccccCCCCCchHHHHHHHHHHHhcCCc--cccc
Confidence 35789999994 322 2 1555555554 3211 1235788888999999999999975432 2236
Q ss_pred CC--cEEEecChHHHHHHHH--HhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHH
Q 046900 120 LN--RIVVTAGATAANELLT--FILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAE 195 (442)
Q Consensus 120 ~~--~i~~t~G~~~ai~~~~--~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~ 195 (442)
++ +|++|+|+++++.+++ .+++++||+|+++.|+|..+...++. .|++++.+++..++++.+|++.|++.+++.
T Consensus 93 ~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~- 170 (397)
T 3fsl_A 93 QQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAG-AGFEVSTYPWYDEATNGVRFNDLLATLKTL- 170 (397)
T ss_dssp TTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHH-TTCCEEEECCEETTTTEECHHHHHHHHTTC-
T ss_pred ccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHH-cCCceEEEeeeeccCCcCcHHHHHHHHHhC-
Confidence 88 9999999999999995 45678999999999999999999885 999999999854456889999999998742
Q ss_pred hcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC-CCcccHHHHHhhhcCCCCCcEEEEe
Q 046900 196 SKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS-SEFVSIAEILEARQYKDSERVHIVY 274 (442)
Q Consensus 196 ~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~-~~~~s~~~~~~~~~~~~~~~vi~~~ 274 (442)
..+++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++ ....++..+... .+++++++
T Consensus 171 --~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~ 243 (397)
T 3fsl_A 171 --QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASA-----GLPALVSN 243 (397)
T ss_dssp --CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHT-----TCCEEEEE
T ss_pred --CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhc-----CCCEEEEe
Confidence 2367888999999999999999999999999999999999999999998863 234455555432 58899999
Q ss_pred cCcccCCCCCceeEEEee--cCHHHHH-HHHHc-----cccCCCcHHHHHHHHHHhcCchhH---HHHHHHHHHHHHHHH
Q 046900 275 SLSKDLGLPGFRVGTIYS--YNDKVVT-TARRM-----SSFTLISSQTQYLLASMLSNKKFT---ENYIKTNRERLQKRY 343 (442)
Q Consensus 275 S~SK~~g~~G~RiG~i~~--~~~~~~~-~~~~~-----~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~~ 343 (442)
||||.+|++|+|+||+++ +++.+.. ..... ......+.++|.+++.++.+..+. .+++++.++.+++++
T Consensus 244 S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 323 (397)
T 3fsl_A 244 SFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMR 323 (397)
T ss_dssp ECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999975 3444443 22221 223445778999999999875432 456788899999999
Q ss_pred HHHHHHHHhC----CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCC
Q 046900 344 QMIIEGLRSA----GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMS 419 (442)
Q Consensus 344 ~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~ 419 (442)
+++.+.|++. |+++..+++|+|+|++++. +....+++++||.+.||. ||+++..+
T Consensus 324 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~v~~g~----------Ris~~~~~ 382 (397)
T 3fsl_A 324 QELVKVLSTEMPERNFDYLLNQRGMFSYTGLSA-----------AQVDRLREEFGVYLIASG----------RMCVAGLN 382 (397)
T ss_dssp HHHHHHHHHHCTTSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEECCTTC----------EEEGGGCC
T ss_pred HHHHHHHHhcCCCCCceeecCCceEEEecCCCH-----------HHHHHHHHhCCEEECCCC----------eEEEEecC
Confidence 9999999886 6888888999999987742 224455566799999863 99998767
Q ss_pred HHHHHHHHHHHHHH
Q 046900 420 EQTLEVALKRIHNF 433 (442)
Q Consensus 420 ~e~i~~~l~~l~~~ 433 (442)
++++++++++|+++
T Consensus 383 ~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 383 TANVQRVAKAFAAV 396 (397)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhh
Confidence 88899999999876
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=351.66 Aligned_cols=325 Identities=16% Similarity=0.207 Sum_probs=262.9
Q ss_pred cccc-CCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHH--HHHHhhcC--C---------CCeEEEcCCC
Q 046900 88 NALF-QDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANE--LLTFILAD--P---------GDALLVPTPY 153 (442)
Q Consensus 88 ~~~Y-~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~--~~~~~l~~--~---------gd~Vl~~~p~ 153 (442)
...| ++..|.++||+++|++++ +++++|++|+|+++++. +++.++++ + ||.|+++.|+
T Consensus 62 ~~~Yp~~~~g~~~lr~~ia~~~~--------~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~ 133 (423)
T 3ez1_A 62 LRNYPGGVAGLPSARALFAGYLD--------VKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPG 133 (423)
T ss_dssp TTSSCSCTTCCHHHHHHHHHHTT--------SCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESC
T ss_pred hhCCCCCCCChHHHHHHHHHHhC--------CChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCC
Confidence 4679 788899999999999974 67899999999999998 88888887 7 5999999999
Q ss_pred CcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEe-CCCCCCCcCCCHHHHHHHHHHH-Hh
Q 046900 154 YPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLIT-NPSNPLGATIQRSVLEELLDFA-TR 231 (442)
Q Consensus 154 y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~-~P~NPtG~~~~~~~l~~l~~~~-~~ 231 (442)
|..+...+.. .|++++.+|++++ .+|++.|++++++ ..++++|+++ +||||||.+++.+++++|+++| ++
T Consensus 134 y~~~~~~~~~-~g~~~~~v~~~~~---g~d~~~l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~ 205 (423)
T 3ez1_A 134 YDRHFLLLQT-LGFELLTVDMQSD---GPDVDAVERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAA 205 (423)
T ss_dssp CHHHHHHHHH-HTCEEEEEEEETT---EECHHHHHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSS
T ss_pred cHHHHHHHHH-cCCEEEeccCCCC---CCCHHHHHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhc
Confidence 9999999885 8999999999864 3899999999852 2378888654 8899999999999999999999 99
Q ss_pred cCcEEEEeccCCcCCCCC---CCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc--
Q 046900 232 KNIHLVSDEIYSGSAFSS---SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS-- 306 (442)
Q Consensus 232 ~~~~vi~De~y~~~~~~~---~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~-- 306 (442)
||++||+||+|..+.|.+ ..+.++.++.... +..+++++++||||.+ ++|+|+||+++ ++.+.+.+.....
T Consensus 206 ~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~S~sK~~-~~G~r~G~~~~-~~~~~~~~~~~~~~~ 281 (423)
T 3ez1_A 206 PDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDA--GYPDRAFVFASTSKIT-FAGAGLGFVAS-SEDNIRWLSKYLGAQ 281 (423)
T ss_dssp TTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHH--TCTTSEEEEEESTTTS-CSSSSCEEEEE-CHHHHHHHHHHHHHS
T ss_pred cCCEEEEECCcchhhcCCCCCCCCcchhhhhhcc--CCCCeEEEEeCchhhc-cCCcceEEEEe-CHHHHHHHHHHHhhh
Confidence 999999999999765544 2345666653210 1257899999999994 69999999999 5566666654432
Q ss_pred cCCCcHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHHHHHHHHHh----CC--CeeecCCceEEEEEecCCcccccCh
Q 046900 307 FTLISSQTQYLLASMLSN-KKFTENYIKTNRERLQKRYQMIIEGLRS----AG--IECLKGNAGLFCWMNLSPLLEEQTR 379 (442)
Q Consensus 307 ~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g--~~~~~~~~g~~~~~~~~~~~~~~~~ 379 (442)
.+..+++.|.++..++++ ...+.+++++.++.++++++.+.+.|.+ .| +.+..|.+|+|+|++++..
T Consensus 282 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~------ 355 (423)
T 3ez1_A 282 SIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP------ 355 (423)
T ss_dssp CSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS------
T ss_pred ccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC------
Confidence 356788999999999987 2334677888888999998888887765 44 6777889999999999863
Q ss_pred hhHHHHHHHHHHcCcEEEeC-CCCCCC---CCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 380 EGELALWDSMLHEVKLNISP-GSSCHC---SEPGWFRVCFANMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 380 ~~~~~l~~~l~~~~gi~v~p-g~~f~~---~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
+...+...|.++ ||.+.| |+.|+. ..++++||+++..+++++++++++|++++++...+
T Consensus 356 -~~~~~~~~l~~~-gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~~ 418 (423)
T 3ez1_A 356 -VADRVVKLAEAA-GVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVVAACIRLATEE 418 (423)
T ss_dssp -CHHHHHHHHHHT-TEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHC-CcEEecCcccccCCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 245666666554 999999 666653 24689999998558999999999999999876543
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=375.62 Aligned_cols=354 Identities=20% Similarity=0.255 Sum_probs=286.4
Q ss_pred CceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.++|+|+++++.++. +.+.+.+.+.... ....|++. ..++|+++++++.+.++ +++++++|++|
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~v~~~ 95 (392)
T 3b1d_A 31 PQLLPAWIADMDFEVMPEVKQAIHDYAEQ-----------LVYGYTYA--SDELLQAVLDWEKSEHQ--YSFDKEDIVFV 95 (392)
Confidence 478999999876643 4444444433211 13467664 78999999999987665 44678999999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC-CCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS-SNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~-~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
+|+++++.+++.+++++||.|+++.|+|..+...+.. .|++++.+++++ +++|.+|++.|++.+++ .++++++
T Consensus 96 ~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-----~~~~~v~ 169 (392)
T 3b1d_A 96 EGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRL-NNRKLVSNSLKEENGLFQIDFEQLENDIVE-----NDVKLYL 169 (392)
Confidence 9999999999999999999999999999999988884 899999999853 34588999999998863 1678899
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.+++.+++++|+++|++||++||+||+|.++.+++..+.++..+..+ ..+++++++||||.+|++|+
T Consensus 170 ~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G~ 245 (392)
T 3b1d_A 170 LCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPD----FKDFALVLSSATKTFNIAGT 245 (392)
Confidence 99999999999999999999999999999999999999998876555566555431 13788999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccccC---CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeecC
Q 046900 286 RVGTIYSYNDKVVTTARRMSSFT---LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS-A-GIECLKG 360 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~ 360 (442)
|+||++++++.+.+.+......+ .+++++|.++.+++... .+++++.++.++++++.+.+.|++ . ++++..+
T Consensus 246 r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 322 (392)
T 3b1d_A 246 KNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG---KPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKP 322 (392)
Confidence 99999996665666665544432 45778888888888753 346788889999999999999987 4 8888889
Q ss_pred CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 361 NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 361 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
.+++++|++++.... +..++++.|++++||.+.||..|+...++++||+++. +++++++++++|+++++
T Consensus 323 ~~~~~~~i~~~~~~~-----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 323 QGTYLIWLDFSDYGL-----TDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA-PKSLVEEICKRIVCCLP 391 (392)
Confidence 999999999875210 2567888887556999999999975556899999997 78899999999998875
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=349.86 Aligned_cols=357 Identities=20% Similarity=0.258 Sum_probs=268.7
Q ss_pred CceeeeecccccccH---HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEE
Q 046900 48 SGVIQMGLAENQVSF---DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 124 (442)
.++|+|+.+.+...+ +.+.+.+.+...... .......|++..|..+||+++|+|+.+.+| +.+++++|+
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~ 102 (417)
T 3g7q_A 31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGK------AADALCNYDGPQGKTALLNALAVLLRETLG--WDIEPQNIA 102 (417)
T ss_dssp -CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTH------HHHHHHSTTCTTSHHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCceEecCcCCCCCChHHHHHHHHHHHHhhCCc------ccceeeccCCCCCcHHHHHHHHHHHHHHhC--CCCCcccEE
Confidence 578999999876633 344444443211000 000124799999999999999999998877 557899999
Q ss_pred EecChHHHHHHHHHhhcCCCC-----eEEEc-CCCCcChHHhHhh-----hcCcEEEEEecCCCCCCcCCHHHHHHHHHH
Q 046900 125 VTAGATAANELLTFILADPGD-----ALLVP-TPYYPGFDRDLRW-----RTGIKIVPIHCDSSNNFQITPQALEAAYKE 193 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd-----~Vl~~-~p~y~~~~~~~~~-----~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~ 193 (442)
+|+|+++++.+++++++++|| .|+++ +|+|+.+...+.. ..+..+..++.+. .+|.+|++.|+ +.
T Consensus 103 ~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~--~~- 178 (417)
T 3g7q_A 103 LTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQ-FKYHVDFEHLH--IG- 178 (417)
T ss_dssp EESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGE-EEEECCGGGCC--CC-
T ss_pred EeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcc-cccccCHHHhc--cc-
Confidence 999999999999999999987 89997 9999998765421 1344555555331 24678988887 33
Q ss_pred HHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEE
Q 046900 194 AESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIV 273 (442)
Q Consensus 194 ~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~ 273 (442)
.+++++++++||||||.+++.+++++|+++|++||++||+||+|+.+.. +..+... .. ...++++++
T Consensus 179 -----~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~-~~~~~~~---~~----~~~~~~i~~ 245 (417)
T 3g7q_A 179 -----EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFP-GIIFSEA---RP----LWNPNIILC 245 (417)
T ss_dssp -----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTT-CCBCSCC---CC----CCCTTEEEE
T ss_pred -----cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccc-ccccccc---cc----CCCCCEEEE
Confidence 3789999999999999999999999999999999999999999986321 1111110 01 124789999
Q ss_pred ecCcccCCCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHH-HHHHHHHHHHHHHHHH
Q 046900 274 YSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKT-NRERLQKRYQMIIEGL 350 (442)
Q Consensus 274 ~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~L 350 (442)
+|||| ++++|+|+||+++ ++.+.+.+...... +..+++.|.++..++++.++ .++..+ +++.++++++.+.+.|
T Consensus 246 ~s~sK-~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 322 (417)
T 3g7q_A 246 MSLSK-LGLPGSRCGIIIA-NDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDL-LRLSETVIKPFYYQRVQQTIAII 322 (417)
T ss_dssp EESGG-GTCTTSCCEEEEC-CHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCH-HHHHHHTHHHHHHHHHHHHHHHH
T ss_pred Eechh-ccCCCcceEEEEe-CHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcch-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 5789999999998 56677666554332 45688999999999998776 444444 7888999999998888
Q ss_pred HhC----CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCC-------CCEEEEEeecCC
Q 046900 351 RSA----GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSE-------PGWFRVCFANMS 419 (442)
Q Consensus 351 ~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~-------~~~iRls~~~~~ 419 (442)
.+. ++.+..+++|+|+|++++.... +..++++.|.++ ||.+.||+.|+... ++++||+++. +
T Consensus 323 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~-~ 395 (417)
T 3g7q_A 323 RRYLSEERCLIHKPEGAIFLWLWFKDLPI-----TTELLYQRLKAR-GVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP-E 395 (417)
T ss_dssp HHHCCTTTCEEECCCBSSEEEEECTTCSS-----CHHHHHHHHHHT-TEECEEGGGGCTTBSSCCGGGGGEEEEESCS-C
T ss_pred HHhcccCCceeeCCCcceEEEEEcCCCCC-----CHHHHHHHHHHC-CEEEECchhhCCCCccccccCCCeEEEEecC-C
Confidence 763 5788889999999999986211 266788888555 99999999886532 4799999998 9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 046900 420 EQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 420 ~e~i~~~l~~l~~~l~~~~~ 439 (442)
++++++++++|++++++..+
T Consensus 396 ~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 396 PDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988754
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=349.49 Aligned_cols=344 Identities=15% Similarity=0.221 Sum_probs=265.5
Q ss_pred Cceeeeecccc-ccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcE--
Q 046900 48 SGVIQMGLAEN-QVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRI-- 123 (442)
Q Consensus 48 ~~~i~l~~~~n-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i-- 123 (442)
+++|+|+++.+ .++ ++.+.+.+.+... .....|++..|.++||+++++|+....+ ..+++++|
T Consensus 41 ~~~i~l~~g~~~d~~~~~~v~~a~~~a~~-----------~~~~~y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~i~~ 107 (409)
T 4eu1_A 41 KRKVNLSIGVYRDDADQPFVLECVKQATL-----------GTNMDYAPVTGIASFVEEAQKLCFGPTC--AALRDGRIAS 107 (409)
T ss_dssp SSCEECCCSSCCCTTSCCCCCHHHHTCCC-----------CSCCCCCCTTCCHHHHHHHHHHHHCSSC--HHHHTTCEEE
T ss_pred cCceeeeeeEEECCCCCEeecHHHHhcCc-----------cccccCCCCCCcHHHHHHHHHHHcCCCc--hhhccCceee
Confidence 47899999875 332 2233333333311 1245788889999999999999852111 11237788
Q ss_pred EEecChHHHHHHH---HHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCc
Q 046900 124 VVTAGATAANELL---TFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMR 200 (442)
Q Consensus 124 ~~t~G~~~ai~~~---~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 200 (442)
..|.|+++++.++ +.+++++||.|++++|+|..+...++. .|++++.+|++.+++|.+|++.|++.+++. ..+
T Consensus 108 ~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~ 183 (409)
T 4eu1_A 108 CQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAK-AGMELTPYSYYDPATKGLNLAGMLECLDKA---PEG 183 (409)
T ss_dssp EEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHH-TTCEEEEECCEETTTTEECHHHHHHHHHHS---CTT
T ss_pred eecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHH-cCCeEEEEEeecCcCCcCcHHHHHHHHHhC---CCC
Confidence 4589989888865 556778999999999999999999985 999999999865567899999999999752 124
Q ss_pred eeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC--CcccHHHHHhhhcCCCCCcEEEEecCcc
Q 046900 201 VRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS--EFVSIAEILEARQYKDSERVHIVYSLSK 278 (442)
Q Consensus 201 ~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~--~~~s~~~~~~~~~~~~~~~vi~~~S~SK 278 (442)
++++++++||||||.+++.+++++|+++|++||++||+||+|+++.+++. ...++..+... .+++++++||||
T Consensus 184 ~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~S~SK 258 (409)
T 4eu1_A 184 SVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDM-----VPNLIVAQSFSK 258 (409)
T ss_dssp CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTT-----SSCCEEEEECTT
T ss_pred cEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhh-----CCcEEEEecCcc
Confidence 56677799999999999999999999999999999999999999887652 12344444332 478899999999
Q ss_pred cCCCCCceeEEE--eecCHH----HHHHHHHcc--ccCCCcHHHHHHHHHHhcCchhH---HHHHHHHHHHHHHHHHHHH
Q 046900 279 DLGLPGFRVGTI--YSYNDK----VVTTARRMS--SFTLISSQTQYLLASMLSNKKFT---ENYIKTNRERLQKRYQMII 347 (442)
Q Consensus 279 ~~g~~G~RiG~i--~~~~~~----~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~l~ 347 (442)
.||++|+|+||+ +++++. +.+.++... .....+++.|.++..++++.... .+++++.++.++++++++.
T Consensus 259 ~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (409)
T 4eu1_A 259 NFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLV 338 (409)
T ss_dssp TSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 565666 545544432 23456789999999999886432 3447788999999999999
Q ss_pred HHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHH
Q 046900 348 EGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTL 423 (442)
Q Consensus 348 ~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i 423 (442)
+.|++.| +++..+++|+|+|++++. +++..+++++||.+.|| .||+++..+++++
T Consensus 339 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ll~~~gv~v~p~----------~Ri~~~~~~~~~i 397 (409)
T 4eu1_A 339 SELKACGSVHDWSHIERQVGMMAYTGLTR-----------EQVELLRSEYHIYMTLN----------GRAAVSGLNSTNV 397 (409)
T ss_dssp HHHHHTTCCSCCHHHHHSCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGCCTTTH
T ss_pred HHHHhcCCCCCcceecCCceEEEEeCCCH-----------HHHHHHHHcCCEEEcCC----------CEEEEEecCHhhH
Confidence 9999987 777789999999976542 45677777669999985 3899987688889
Q ss_pred HHHHHHHHHHH
Q 046900 424 EVALKRIHNFM 434 (442)
Q Consensus 424 ~~~l~~l~~~l 434 (442)
++++++|++++
T Consensus 398 ~~~~~~l~~~l 408 (409)
T 4eu1_A 398 EYVSQAIHNVT 408 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998875
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=336.57 Aligned_cols=333 Identities=18% Similarity=0.279 Sum_probs=269.2
Q ss_pred CCCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEE
Q 046900 46 NPSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 46 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 124 (442)
++.++|||+.++|+++ ++.+.+.+.+... ....|++ .+..++|+++|++++ +++++|+
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~------------~~~~y~~-~~~~~l~~~la~~~~--------~~~~~i~ 82 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNIDEGIK------------NLGVYPD-VNYRRLNKSIENYLK--------LKDIGIV 82 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHHHHHH------------GGGSCCC-TTCHHHHHHHHHHHT--------CCSCEEE
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHHHHHH------------HhcCCCC-ccHHHHHHHHHHHhC--------CCcceEE
Confidence 4568899999998874 3444444443221 1345754 578999999999985 6789999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++.+++.++ |+|+++.|+|..+...++. .|++++.++++++++ ++++++++.++ +++++
T Consensus 83 ~~~g~t~al~~~~~~~----d~vi~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~--~~~~~l~~~l~-------~~~~v 148 (361)
T 3ftb_A 83 LGNGASEIIELSISLF----EKILIIVPSYAEYEINAKK-HGVSVVFSYLDENMC--IDYEDIISKID-------DVDSV 148 (361)
T ss_dssp EESSHHHHHHHHHTTC----SEEEEEESCCTHHHHHHHH-TTCEEEEEECCTTSC--CCHHHHHHHTT-------TCSEE
T ss_pred EcCCHHHHHHHHHHHc----CcEEEecCChHHHHHHHHH-cCCeEEEeecCcccC--CCHHHHHHhcc-------CCCEE
Confidence 9999999999999888 8999999999999999885 899999999987654 56688888775 27899
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++++|+||||.+++.+++++|+++|++||+++|+||+|+++.++ . ..+...... ..+++++++|+||.+|++|
T Consensus 149 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~-~~~~~~~~~-----~~~~~i~~~s~sK~~~~~G 221 (361)
T 3ftb_A 149 IIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-P-SSSFVGEIK-----NYSCLFIIRAMTKFFAMPG 221 (361)
T ss_dssp EEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-T-TSSSGGGTT-----TCSSEEEEEESSSTTSCGG
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-c-ccchhHhcc-----cCCCEEEEeeChhhcCCCC
Confidence 99999999999999999999999999999999999999998875 2 223222222 2478899999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-eecCCc
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIE-CLKGNA 362 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~ 362 (442)
+|+||+++.++.+.+.++.....+..+++.|.++.+++++. +++++.++.++++++.+.+.|+++ ++. +.++.+
T Consensus 222 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 297 (361)
T 3ftb_A 222 IRFGYGITNNKEIAAKIKAKQNPWNINCFAEMAAINCLKDT----NYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHA 297 (361)
T ss_dssp GCCEEEEESCHHHHHHHHTTSCTTCSCHHHHHHHHHTSSCH----HHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSS
T ss_pred cceeEEEeCCHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCCC
Confidence 99999994478888888877777788999999999999863 457888899999999999999988 787 666665
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
+ |+|++++.. +..++++.|.++ ||.+.||+.|+...++++||+++. .++++++++.|+++.+
T Consensus 298 ~-~~~~~~~~~-------~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~~--~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 298 N-FVLCRLENI-------SGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRFAIKD--EKKNTKFLRALKGVEN 359 (361)
T ss_dssp S-EEEEEESSS-------CHHHHHHHHHTT-TEECEECTTSTTCCTTEEEEECCC--HHHHHHHHHHHHHHHH
T ss_pred e-EEEEEcCCC-------CHHHHHHHHHHC-CeEEeeCccCCCCCCCEEEEEcCC--HHHHHHHHHHHHHHHh
Confidence 5 788888761 267888888877 999999999986667899999984 6677777777777654
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=343.47 Aligned_cols=348 Identities=16% Similarity=0.201 Sum_probs=267.9
Q ss_pred CCceeeeecccc------cccHHHHHHHHHh-CCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 47 PSGVIQMGLAEN------QVSFDLLEEYLEQ-QPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 47 ~~~~i~l~~~~n------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
..++|||+.+.. ..+++.+.+.+.+ .... .....|++..|..++|+++++++.+.++ +.++
T Consensus 28 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~----------~~~~~y~~~~g~~~lr~~ia~~~~~~~~--~~~~ 95 (412)
T 1yaa_A 28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS----------SYNHEYLGITGLPSLTSNAAKIIFGTQS--DALQ 95 (412)
T ss_dssp CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT----------TCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHH
T ss_pred CCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc----------ccccCCCCCCCcHHHHHHHHHHHhcCCC--CCCC
Confidence 356789998763 1344666666655 4321 1235688888999999999999975433 3457
Q ss_pred CCcEEE--ecChHHHHHHHH--HhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHH
Q 046900 120 LNRIVV--TAGATAANELLT--FILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAE 195 (442)
Q Consensus 120 ~~~i~~--t~G~~~ai~~~~--~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~ 195 (442)
+++|++ |+|+++++.+++ ..++.+||+|+++.|+|+.+...++. .|++++.+++.++.++.+|++.|++.+++.
T Consensus 96 ~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~- 173 (412)
T 1yaa_A 96 EDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFEN-QGLKTATYPYWANETKSLDLNGFLNAIQKA- 173 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHT-TTCCEEEEECEETTTTEECHHHHHHHHHHS-
T ss_pred cceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHH-cCceEEEEeeecCCCCccCHHHHHHHHHhC-
Confidence 899999 999999999883 34456999999999999999999885 899999999822235789999999998752
Q ss_pred hcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC--CCcccHHHHHhhhcCCCCC---cE
Q 046900 196 SKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS--SEFVSIAEILEARQYKDSE---RV 270 (442)
Q Consensus 196 ~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~--~~~~s~~~~~~~~~~~~~~---~v 270 (442)
...+.++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++ ..+.++..+... .+ ++
T Consensus 174 --~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 246 (412)
T 1yaa_A 174 --PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK-----LSTVSPV 246 (412)
T ss_dssp --CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH-----TTTTCCE
T ss_pred --CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhc-----CCCCcce
Confidence 1123455559999999999999999999999999999999999999988764 123344444432 24 89
Q ss_pred EEEecCcccCCCCCceeEEEe--e----cCHH----HHHHHHH-ccc-cCCCcHHHHHHHHHHhcCchhH---HHHHHHH
Q 046900 271 HIVYSLSKDLGLPGFRVGTIY--S----YNDK----VVTTARR-MSS-FTLISSQTQYLLASMLSNKKFT---ENYIKTN 335 (442)
Q Consensus 271 i~~~S~SK~~g~~G~RiG~i~--~----~~~~----~~~~~~~-~~~-~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~ 335 (442)
++++||||.+|++|+|+||++ + .++. +.+.+.. ... ....+++.|.++.+++++..+. .+++++.
T Consensus 247 i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 326 (412)
T 1yaa_A 247 FVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTM 326 (412)
T ss_dssp EEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred EEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999997799999998 6 1444 5555554 222 2345789999999999876421 4578889
Q ss_pred HHHHHHHHHHHHHHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEE
Q 046900 336 RERLQKRYQMIIEGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWF 411 (442)
Q Consensus 336 ~~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~i 411 (442)
++.++++++++.+.|++.+ +++..+++|+|+|+.++ ...+ ..+++++||.+.| ++
T Consensus 327 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~l~~~gi~v~~----------~~ 385 (412)
T 1yaa_A 327 SSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT----------PQMV-KRLEETHAVYLVA----------SG 385 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC----------HHHH-HHHHHHHCEECCT----------TS
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCC----------HHHH-HHHHHhCCEEecc----------Cc
Confidence 9999999999999998876 88888899999998653 2334 5666555999987 37
Q ss_pred EEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 412 RVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 412 Rls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
||+++..+++++++++++|+++++.
T Consensus 386 Ris~~~~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 386 RASIAGLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp EEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred EEEEccCCHhHHHHHHHHHHHHHHh
Confidence 9999855889999999999998764
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=344.22 Aligned_cols=349 Identities=16% Similarity=0.204 Sum_probs=272.8
Q ss_pred CCceeeeecccc------cccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC
Q 046900 47 PSGVIQMGLAEN------QVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120 (442)
Q Consensus 47 ~~~~i~l~~~~n------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 120 (442)
..++|||+.+.+ +.+.+.+.+.+.+..... .....|++..|..+||+++++++...++ ..+++
T Consensus 29 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~---------~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~~~ 97 (412)
T 1ajs_A 29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNS---------SLNHEYLPILGLAEFRTCASRLALGDDS--PALQE 97 (412)
T ss_dssp CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCT---------TCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHT
T ss_pred CCCceeeccceecCCCCCccccHHHHHHHHHhhhCh---------hhccCCCCCCCCHHHHHHHHHHHhcCCC--CccCC
Confidence 356899999873 233466666655432100 1235687788999999999999964433 33478
Q ss_pred CcEEE--ecChHHHHHHHHH--hhcCCC-----CeEEEcCCCCcChHHhHhhhcCcE-EEEEecCCCCCCcCCHHHHHHH
Q 046900 121 NRIVV--TAGATAANELLTF--ILADPG-----DALLVPTPYYPGFDRDLRWRTGIK-IVPIHCDSSNNFQITPQALEAA 190 (442)
Q Consensus 121 ~~i~~--t~G~~~ai~~~~~--~l~~~g-----d~Vl~~~p~y~~~~~~~~~~~G~~-v~~v~~~~~~~~~~d~~~l~~~ 190 (442)
++|++ |+|+++++.++++ .++++| |.|+++.|+|+.+...+.. .|++ ++.++++++++|.+|++.|++.
T Consensus 98 ~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~~d~~~l~~~ 176 (412)
T 1ajs_A 98 KRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTT-AGFKDIRSYRYWDTEKRGLDLQGFLSD 176 (412)
T ss_dssp TCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHH-TTCSCEEEEECEETTTTEECHHHHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHH-cCCceeEEEeeecCCCCccCHHHHHHH
Confidence 99999 9999999999964 456799 9999999999999998885 8999 9999986445688999999999
Q ss_pred HHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC--CCcccHHHHHhhhcCCCCC
Q 046900 191 YKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS--SEFVSIAEILEARQYKDSE 268 (442)
Q Consensus 191 l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~--~~~~s~~~~~~~~~~~~~~ 268 (442)
+.+. +.+++++++++|+||||.+++.+++++|+++|++||++||+||+|.++.+++ ..+.++..+... .+
T Consensus 177 l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~-----~~ 248 (412)
T 1ajs_A 177 LENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSE-----GF 248 (412)
T ss_dssp HHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT-----TC
T ss_pred HHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhcc-----CC
Confidence 8752 2356778889999999999999999999999999999999999999988764 123355545432 47
Q ss_pred cEEEEecCcccCCCCCceeEEEee--cCHH----HHHHHHH-cccc-CCCcHHHHHHHHHHhcCchhH---HHHHHHHHH
Q 046900 269 RVHIVYSLSKDLGLPGFRVGTIYS--YNDK----VVTTARR-MSSF-TLISSQTQYLLASMLSNKKFT---ENYIKTNRE 337 (442)
Q Consensus 269 ~vi~~~S~SK~~g~~G~RiG~i~~--~~~~----~~~~~~~-~~~~-~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~ 337 (442)
+++++.||||.+|++|+|+||+++ +++. +...+.. .... ...+++.|.++.++|++..+. .+++++.++
T Consensus 249 ~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 328 (412)
T 1ajs_A 249 ELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMAD 328 (412)
T ss_dssp CEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred cEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHH
Confidence 899999999999988999999998 2343 3333443 2223 335889999999999876421 456788899
Q ss_pred HHHHHHHHHHHHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEE
Q 046900 338 RLQKRYQMIIEGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRV 413 (442)
Q Consensus 338 ~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRl 413 (442)
.++++++++.+.|++.+ +++..+.+|+|+|++++ .+++..+++++||.+.|| +||
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~gv~v~~~----------~Ri 387 (412)
T 1ajs_A 329 RILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN-----------PKQVEYLINQKHIYLLPS----------GRI 387 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC-----------HHHHHHHHHTTCEECCTT----------SEE
T ss_pred HHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC-----------HHHHHHHHHhCCEEecCC----------cEE
Confidence 99999999999999876 77778899999998664 134556666679999873 599
Q ss_pred EeecCCHHHHHHHHHHHHHHHHH
Q 046900 414 CFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 414 s~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
+++..+++++++++++|++++++
T Consensus 388 s~~~~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 388 NMCGLTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp EGGGCCTTTHHHHHHHHHHHHHH
T ss_pred EeeeCCHHHHHHHHHHHHHHHHh
Confidence 99955889999999999999865
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=345.31 Aligned_cols=393 Identities=19% Similarity=0.253 Sum_probs=289.7
Q ss_pred ccchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCcee-eeecccccccH---HHHHHHHHhCCCCcccCCCCC-C--C
Q 046900 13 GLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVI-QMGLAENQVSF---DLLEEYLEQQPEASTWGKGAP-G--F 85 (442)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~l~~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~-~--~ 85 (442)
.+|+++.+... .+....-+....+. .+.+++| +|+.+.+..++ +.+.+.+.+...... +|.. . .
T Consensus 3 ~~s~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 73 (444)
T 3if2_A 3 KFSKFGQKFTQ--PTGISQLMDDLGDA-----LKSDQPVNMLGGGNPAKIDAVNELFLETYKALGNDND--TGKANSSAI 73 (444)
T ss_dssp CCCHHHHHHHS--CCHHHHHHHHHHHH-----HHSSSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSC--TTCCCCHHH
T ss_pred CcchhhhhccC--chhHHHHHHHHHhh-----hcCchhhhccCCCCCCcccchHHHHHHHHHHHHhccc--cccccchhh
Confidence 46788877753 23333222222111 1125789 99999877654 334444443221100 0000 0 0
Q ss_pred CcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCC--------------eEEEc-
Q 046900 86 RENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGD--------------ALLVP- 150 (442)
Q Consensus 86 ~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd--------------~Vl~~- 150 (442)
.....|++..|.++||+++|+|+.+.+| +.+++++|++|+|+++++.+++.+++++|| .|+++
T Consensus 74 ~~~~~y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~ 151 (444)
T 3if2_A 74 ISMANYSNPQGDSAFIDALVGFFNRHYD--WNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPL 151 (444)
T ss_dssp HHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESS
T ss_pred hhhhccCCCCCCHHHHHHHHHHHHhhcC--CCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeC
Confidence 1135699889999999999999998877 557899999999999999999999999998 78876
Q ss_pred CCCCcChHHh------HhhhcCcEEEEEecCCCC---CCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHH
Q 046900 151 TPYYPGFDRD------LRWRTGIKIVPIHCDSSN---NFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSV 221 (442)
Q Consensus 151 ~p~y~~~~~~------~~~~~G~~v~~v~~~~~~---~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~ 221 (442)
.|+|+.+... +. ..|..++.++.++++ +|.+|++.|++++++. ..++++|++++|+||||.+++.++
T Consensus 152 ~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~ 227 (444)
T 3if2_A 152 TPEYIGYSDVHVEGQHFA-AVLPHIDEVTHDGEEGFFKYRVDFEALENLPALK---EGRIGAICCSRPTNPTGNVLTDEE 227 (444)
T ss_dssp SSCCGGGTTCCSSSCCEE-ECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHH---TTCEEEEEEESSCTTTCCCCCHHH
T ss_pred CCCccchhhcccccchhh-ccCceEEecccccccCccccCCCHHHHHHHHHhc---CCCceEEEeCCCCCCCCCcCCHHH
Confidence 9999998763 33 368899999887532 3779999999885431 237899999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHH
Q 046900 222 LEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTA 301 (442)
Q Consensus 222 l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~ 301 (442)
+++|+++|++||++||+||+|+.+.. +..+... .. ...+++++++||||. +++|+|+||+++ ++.+.+.+
T Consensus 228 l~~i~~~a~~~~~~li~De~~~~~~~-~~~~~~~---~~----~~~~~~i~~~S~sK~-~~~G~r~G~~~~-~~~l~~~~ 297 (444)
T 3if2_A 228 MAHLAEIAKRYDIPLIIDNAYGMPFP-NIIYSDA---HL----NWDNNTILCFSLSKI-GLPGMRTGIIVA-DAKVIEAV 297 (444)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCTTTT-CCBCSCC---CC----CCCTTEEEEEESTTT-TCGGGCCEEEEC-CHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEECCCCCccc-ccccccc---cc----cCCCCEEEEechhhc-cCCCCceEEEEE-CHHHHHHH
Confidence 99999999999999999999986321 1111110 00 124789999999997 679999999998 56666666
Q ss_pred HHccc--cCCCcHHHHHHHHHHhcCchhHHHHHHH-HHHHHHHHHHHHHHHHHhC----CCeeecCCceEEEEEecCC-c
Q 046900 302 RRMSS--FTLISSQTQYLLASMLSNKKFTENYIKT-NRERLQKRYQMIIEGLRSA----GIECLKGNAGLFCWMNLSP-L 373 (442)
Q Consensus 302 ~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~-~ 373 (442)
..... .+..+++.|.++..++....+ .++..+ .++.++++++.+.+.|.+. ++.+..+.+|+|+|++++. .
T Consensus 298 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~ 376 (444)
T 3if2_A 298 SAMNAVVNLAPTRFGAAIATPLVANDRI-KQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLP 376 (444)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCS
T ss_pred HHHHHhccCCCChHHHHHHHHHHHcCch-hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCC
Confidence 54433 256788999999999998776 344444 7788899999998888763 5677788999999999986 2
Q ss_pred ccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCC--------CCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 374 LEEQTREGELALWDSMLHEVKLNISPGSSCHCSE--------PGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 374 ~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~--------~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
. +..+++..|.++ ||.+.||+.|.... .+++||+++. +++++++++++|++++++..+
T Consensus 377 ~------~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 377 I------STLDLYERLKAK-GTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA-DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp S------CHHHHHHHHHHT-TEECEEGGGSCTTCCCTTCSGGGSEEEEESSS-CHHHHHHHHHHHHHHHHHHHT
T ss_pred C------CHHHHHHHHHHC-CeEEecchhhcCCCCCcccccCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHHHc
Confidence 2 266788888555 99999999986431 2689999998 999999999999999988754
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-42 Score=330.76 Aligned_cols=322 Identities=15% Similarity=0.252 Sum_probs=255.2
Q ss_pred CCCCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcE
Q 046900 45 TNPSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRI 123 (442)
Q Consensus 45 ~~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i 123 (442)
.++.++|+|+.++|++++ +.+.+.+.+... ....|++ .|..+||+++|++++ +++++|
T Consensus 13 ~~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~------------~~~~y~~-~~~~~lr~~la~~~~--------~~~~~i 71 (337)
T 3p1t_A 13 RAAAQAVCLAFNENPEAVEPRVQAAIAAAAA------------RINRYPF-DAEPRVMRKLAEHFS--------CPEDNL 71 (337)
T ss_dssp -CCCCCEECSSCCCCSCCCHHHHHHHHHHGG------------GTTSCCT-THHHHHHHHHHHHHT--------SCGGGE
T ss_pred cCCCCceEeeCCCCCCCCCHHHHHHHHHhhh------------hhccCCC-CchHHHHHHHHHHhC--------cCHHHE
Confidence 446678999999998853 666666665431 2456854 589999999999985 678899
Q ss_pred EEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 124 VVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 124 ~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
++|+|+++++.+++.++ +||.|+++.|+|..+...++. .|++++.+++++ +|.+|++.+++. .++++
T Consensus 72 ~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~~~~~-~g~~~~~v~~~~--~~~~d~~~l~~~--------~~~~~ 138 (337)
T 3p1t_A 72 MLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARIAV-SGLRHFEIGLTD--DLLLDPNDLAQV--------SRDDC 138 (337)
T ss_dssp EEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHHHHTT-SCCEEEEECBCT--TSSBCHHHHTTC--------CTTEE
T ss_pred EEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHHHHHH-cCCEEEEecCCC--CCCCCHHHHHhh--------cCCCE
Confidence 99999999999999988 999999999999999999884 899999999875 477999998865 26789
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
+++++|+||||.+++.+++.+|+ +++++ +|+||+|+++.+.+.... ...+++++++|+||.+|++
T Consensus 139 v~i~~p~nptG~~~~~~~l~~l~---~~~~~-~ivDea~~~~~~~~~~~~-----------~~~~~~i~~~S~sK~~g~~ 203 (337)
T 3p1t_A 139 VVLANPSNPTGQALSAGELDQLR---QRAGK-LLIDETYVDYSSFRARGL-----------AYGENELVFRSFSKSYGLA 203 (337)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHH---HHCSE-EEEECTTGGGSSCSSSCC-----------CCBTTEEEEEESSSTTCCT
T ss_pred EEEeCCCCCCCCCCCHHHHHHHH---HhCCc-EEEECCChhhcccccccc-----------ccCCCEEEEeeCchhccCc
Confidence 99999999999999977766665 46676 566999998665432111 1136789999999999999
Q ss_pred CceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCce
Q 046900 284 GFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG 363 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 363 (442)
|+|+||+++ ++.+.+.+++....+..+++.|.++..+++..++ ..+.++++.++++.+.+.|++.|+++.+++++
T Consensus 204 G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 278 (337)
T 3p1t_A 204 GLRLGALFG-PSELIAAMKRKQWFCNVGTLDLHALEAALDNDRA----REAHIAKTLAQRRRVADALRGLGYRVASSEAN 278 (337)
T ss_dssp TTCCEEEEC-CHHHHHHHHTTSCTTCSCHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSS
T ss_pred chheEEEEe-CHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHHHCcCEECCCCCe
Confidence 999999999 5667777777666777889999999999987543 34455566777899999999989988877776
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
|+|+..+. ..++.+.|.+ +||.+.||+.|+. ++++||+++. +++++++++.|+++.+
T Consensus 279 -~~~~~~~~---------~~~~~~~l~~-~gi~v~~g~~~~~--~~~iRis~~~--~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 279 -FVLVENAA---------GERTLRFLRE-RGIQVKDAGQFGL--HHHIRISIGR--EEDNDRLLAALAEYSD 335 (337)
T ss_dssp -EEEEECTT---------THHHHHHHHH-TTEECEEGGGGTC--CSEEEEECCC--HHHHHHHHHHHHHHTC
T ss_pred -EEEEEcCC---------HHHHHHHHHH-CCeEEEECccCCC--CCeEEEecCC--HHHHHHHHHHHHHHhh
Confidence 66666654 2345555544 5999999999864 6799999984 7889999999988753
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=359.51 Aligned_cols=355 Identities=13% Similarity=0.158 Sum_probs=274.2
Q ss_pred cccCCCCcchhhhhhhh------cC-----CCCCCCCCCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcc
Q 046900 21 ETHGEDSPYFAGWKAYD------EN-----PYEESTNPSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFREN 88 (442)
Q Consensus 21 ~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (442)
..||+ +++.+| .+. .+ ++.+..++.++|+|+.+++.++. +.+.+.+.+..... + ...
T Consensus 21 ~~~g~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~l~~~----~----~~~ 89 (427)
T 2hox_A 21 SEHGR--AFLDGI-ISEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEEYWKQHKEASAVLVS----P----WHR 89 (427)
T ss_dssp GGGEE--CCTTSC-EETTEECCEECTTEESTTSCEECTTCCEECCSCCCGGGHHHHTTSHHHHCEEEC----T----TTT
T ss_pred CcCCc--eeeccc-cccCCcccccccccCCCCCcccCCCceEEecCcCCCCCCCHHHHHhHHhhhhcC----C----ccc
Confidence 45666 677788 555 33 56777788899999999998764 34444444332100 0 012
Q ss_pred cccCCCc-c---hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh--------cCCCCeEEEcCCCCcC
Q 046900 89 ALFQDYH-G---LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL--------ADPGDALLVPTPYYPG 156 (442)
Q Consensus 89 ~~Y~~~~-g---~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l--------~~~gd~Vl~~~p~y~~ 156 (442)
..|++.. | .++||++||+|+++..+ ..+++++|++|+|+++++.+++.+| +++||.|++++|+|+.
T Consensus 90 ~~Y~~~~~G~~~~~~lr~aia~~~~~~~~--~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~ 167 (427)
T 2hox_A 90 MSYFFNPVSNFISFELEKTIKELHEVVGN--AAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPV 167 (427)
T ss_dssp CSSSCSSCCTTCCHHHHHHHHHHHHHHTC--BCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHH
T ss_pred ccCCCCCCCccchHHHHHHHHHHHHHhCC--cCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCccc
Confidence 3498888 8 89999999999997643 4468899999999999999999999 8999999999999999
Q ss_pred hHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEE
Q 046900 157 FDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHL 236 (442)
Q Consensus 157 ~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~v 236 (442)
+...++. .|++++.+ .+|++.|++.+++ ++++|+++|||||||.+++ +.+ + ++.+
T Consensus 168 ~~~~~~~-~g~~~~~~--------~~d~~~l~~~~~~------~~k~v~l~~p~NPtG~~~~-~~l-------~--~~~~ 222 (427)
T 2hox_A 168 FREQTKY-FDKKGYVW--------AGNAANYVNVSNP------EQYIEMVTSPNNPEGLLRH-AVI-------K--GCKS 222 (427)
T ss_dssp HHHHHHH-SCBTTEEE--------EEEGGGGTTCSCG------GGEEEEEESSCTTTCCCCC-CSS-------T--TCEE
T ss_pred HHHHHHH-cCCeeeee--------cCCHHHHHHhhcC------CceEEEEcCCCCCcccccH-HHH-------c--CCCE
Confidence 9999985 89887643 3677888876653 6789999999999999999 422 2 4567
Q ss_pred EEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHH
Q 046900 237 VSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQT 314 (442)
Q Consensus 237 i~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~ 314 (442)
|.|++|.+ . +.++..+. .+++|+++||||.+|++|+|+||++++++.+.+.+.+.... +.++.++
T Consensus 223 i~d~~~~~----~--~~s~~~~~-------~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 289 (427)
T 2hox_A 223 IYDMVYYW----P--HYTPIKYK-------ADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRET 289 (427)
T ss_dssp EEECTTCS----T--TTSCCCSC-------BCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHH
T ss_pred EEeecccC----C--CCCccccC-------CCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHH
Confidence 77777642 1 22222221 37899999999999999999999999667777777665443 5688999
Q ss_pred HHHHHHHhcCc-hh-------HHHHHHHHHHHHHHHHHHHHHHHHhC-CCee--------------ecCCceEEEEEecC
Q 046900 315 QYLLASMLSNK-KF-------TENYIKTNRERLQKRYQMIIEGLRSA-GIEC--------------LKGNAGLFCWMNLS 371 (442)
Q Consensus 315 q~~~~~~l~~~-~~-------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--------------~~~~~g~~~~~~~~ 371 (442)
|.++..+|++. ++ .++++++.++.++++++++.+.|++. |+.+ ..|++|+|+|++++
T Consensus 290 q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~ 369 (427)
T 2hox_A 290 QLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCE 369 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEEC
T ss_pred HHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECC
Confidence 99999988863 21 14567888999999999999999886 5543 35677999999997
Q ss_pred CcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 372 PLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 372 ~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
. ++.+++..+++++||.++||+.|+. .++++|||++. +++++++++++|++++++
T Consensus 370 ~--------~~~~~~~~ll~~~gI~v~pg~~f~~-~~~~~Ris~~~-~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 370 W--------EEDKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIK-TQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp S--------GGGCSHHHHHHHTTEECEEGGGGTS-CTTEEEEECSS-CHHHHHHHHHHHHHHHTC
T ss_pred C--------cHHHHHHHHHHHCCEEEcCCCccCC-CCCEEEEEecC-CHHHHHHHHHHHHHHHhh
Confidence 5 1345777887666999999999975 57899999998 899999999999998754
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-43 Score=344.94 Aligned_cols=345 Identities=17% Similarity=0.216 Sum_probs=264.2
Q ss_pred Cceeeeeccc---cc---ccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 48 SGVIQMGLAE---NQ---VSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 48 ~~~i~l~~~~---n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
.++|||+.+. +. .+++.+.+.+.+.... .....|++..|..+||+++++++....+ ..++++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----------~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~~~~ 93 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN----------ETTKNYLGIDGIPEFGRCTQELLFGKGS--ALINDK 93 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHH----------CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHTT
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcCc----------ccccCCCCCCCCHHHHHHHHHHHhcCCC--Cccccc
Confidence 4679999987 21 2335555555443110 0134687888999999999999964322 224688
Q ss_pred cEEE--ecChHHHHHHHHHhh--cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhc
Q 046900 122 RIVV--TAGATAANELLTFIL--ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESK 197 (442)
Q Consensus 122 ~i~~--t~G~~~ai~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 197 (442)
+|++ |+|+++++.++++++ +.+||.|+++.|+|+.+...++. .|++++.+++++++++.+|++.|++.+++.
T Consensus 94 ~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~--- 169 (396)
T 2q7w_A 94 RARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNS-AGLEVREYAYYDAENHTLDFDALINSLNEA--- 169 (396)
T ss_dssp CEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHH-TTCEEEEEECEETTTTEECHHHHHHHHTTC---
T ss_pred cEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHH-cCCceEEEecccCCCCCcCHHHHHHHHHhC---
Confidence 9998 999999999998766 46999999999999999999885 899999999864456789999999988641
Q ss_pred CCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC-CCcccHHHHHhhhcCCCCCcEEEEecC
Q 046900 198 DMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS-SEFVSIAEILEARQYKDSERVHIVYSL 276 (442)
Q Consensus 198 ~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~-~~~~s~~~~~~~~~~~~~~~vi~~~S~ 276 (442)
..+++++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++ ..+.++..+... .+++++++||
T Consensus 170 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~s~ 244 (396)
T 2q7w_A 170 QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAM-----HKELIVASSY 244 (396)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHH-----CSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhc-----CCcEEEEEec
Confidence 1246778889999999999999999999999999999999999999988753 123355545443 4689999999
Q ss_pred cccCCCCCceeEEEee--cCH----HHHHHHHHc--cccCCCcHHHHHHHHHHhcCch---hHHHHHHHHHHHHHHHHHH
Q 046900 277 SKDLGLPGFRVGTIYS--YND----KVVTTARRM--SSFTLISSQTQYLLASMLSNKK---FTENYIKTNRERLQKRYQM 345 (442)
Q Consensus 277 SK~~g~~G~RiG~i~~--~~~----~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~ 345 (442)
||.+|++|+|+||+++ +++ .+...+... ..+...+++.|.++.+++++.. ...+++++.++.++++++.
T Consensus 245 sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 324 (396)
T 2q7w_A 245 SXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQL 324 (396)
T ss_dssp TTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHH
T ss_pred cccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 344 344444332 2233458899999999998751 1245778889999999999
Q ss_pred HHHHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHH
Q 046900 346 IIEGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQ 421 (442)
Q Consensus 346 l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e 421 (442)
+.+.|++.+ +++..|++|+|+|++++. +.+..+++++||.+.|| +||+++..+++
T Consensus 325 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gv~v~~~----------~Ris~~~~~~e 383 (396)
T 2q7w_A 325 FVNTLQEKGANRDFSFIIKQNGMFSFSGLTK-----------EQVLRLREEFGVYAVAS----------GRVNVAGMTPD 383 (396)
T ss_dssp HHHHHHHTTCCSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGCCTT
T ss_pred HHHHHHhcCCCCCcceecCCCceEEEecCCH-----------HHHHHHHHhcCeeecCC----------ceEEEeecCHH
Confidence 999999886 777788999999987642 23444455559999873 69999855889
Q ss_pred HHHHHHHHHHHHH
Q 046900 422 TLEVALKRIHNFM 434 (442)
Q Consensus 422 ~i~~~l~~l~~~l 434 (442)
++++++++|++++
T Consensus 384 ~i~~~~~~l~~~l 396 (396)
T 2q7w_A 384 NMAPLCEAIVAVL 396 (396)
T ss_dssp THHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998763
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=333.27 Aligned_cols=326 Identities=20% Similarity=0.255 Sum_probs=262.1
Q ss_pred CceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
.++|||+.++|+++. +.+.+.+.+.. .....|++..+ .+||+++|++++ +++++|++|
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~------------~~~~~y~~~~~-~~lr~~la~~~~--------~~~~~i~~t 73 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENL------------NCIRHYPEPDA-GTLRQMLAKRNS--------VDNNAILVT 73 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTG------------GGGGSCCCTTC-HHHHHHHHHHTT--------CCGGGEEEE
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhH------------hHHhcCCCCcH-HHHHHHHHHHhC--------cCHHHEEEc
Confidence 678999999988753 55666655543 12457887777 899999999974 678999999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEec-CCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHC-DSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~-~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
+|+++++.+++.++. ||+|+++.|+|..+...++. .|++++.+++ ++.+++.+ + ++++|+
T Consensus 74 ~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~----------~------~~~~v~ 134 (350)
T 3fkd_A 74 NGPTAAFYQIAQAFR--GSRSLIAIPSFAEYEDACRM-YEHEVCFYPSNEDIGEADF----------S------NMDFCW 134 (350)
T ss_dssp SHHHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHHH-TTCEEEEEETTSCGGGSCC----------T------TCSEEE
T ss_pred CCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHHHHHH-cCCeEEEEecCCccccCcc----------C------CCCEEE
Confidence 999999999999997 99999999999999999885 9999999998 65444433 1 788999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.+++.+++.+|++.|.++ +||+||+|+++.+++.... ..+. ..+++++++||||.+|++|+
T Consensus 135 i~~p~nptG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~--~~~~------~~~~~i~~~S~sK~~~~~G~ 204 (350)
T 3fkd_A 135 LCNPNNPDGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRP--ADIK------GRKNLVMVYSFSHAYGIPGL 204 (350)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCG--GGGT------TCSSEEEEEESHHHHSCGGG
T ss_pred EeCCCCCcCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcchhh--HHhh------cCCCEEEEecCchhccCcch
Confidence 999999999999999999999998765 9999999999887654321 1111 25889999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceE
Q 046900 286 RVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGL 364 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~ 364 (442)
|+||+++ ++.+.+.+......+.++++.|.++..++++.+. +.++.++.. ++++.+.+.|++. |+++.++.+ .
T Consensus 205 r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~~~-~ 278 (350)
T 3fkd_A 205 RIGYIVA-NKDFMKRVAAFSTPWAVNALAIEAAKFILIHPAQ---FTLPIRKWQ-RNTVDFITALNRLDGVEVHPSGT-T 278 (350)
T ss_dssp CCEEEEC-CHHHHHHHHTTCCTTCSCHHHHHHHHHHHHCTTT---TCCCHHHHH-HHHHHHHHHHHHSTTEEECCCSS-S
T ss_pred heEeEEe-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCHHH---HHHHHHHHH-HHHHHHHHHHhcCCCcEECCCCC-c
Confidence 9999999 7788888887777788899999999999987651 122333333 7888999999887 888866555 4
Q ss_pred EEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 365 FCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
|+|+.++.. +..++++.|++++||.+.||+.|+...++++||+++. +++++++++.|++++++..
T Consensus 279 ~~~~~~~~~-------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~~~l~~al~~~~~~~~ 343 (350)
T 3fkd_A 279 FFLLRLKKG-------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQR--PAQNQLFIKALETFLEKYE 343 (350)
T ss_dssp EEEEEESSS-------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECCC--HHHHHHHHHHHHHHHTC--
T ss_pred EEEEECCCC-------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcCC--HHHHHHHHHHHHHHHHHhc
Confidence 778888753 2678899998846999999999987667899999984 7778999999988877654
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-42 Score=343.77 Aligned_cols=345 Identities=17% Similarity=0.245 Sum_probs=268.2
Q ss_pred ceeeeecccc-cc-----cHHHHHHHHHhCC--CCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCc---
Q 046900 49 GVIQMGLAEN-QV-----SFDLLEEYLEQQP--EASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAK--- 117 (442)
Q Consensus 49 ~~i~l~~~~n-~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~--- 117 (442)
.+|||+++.. .. ..+.+.+...... .. .....|.+..|.+++|+++++++. + ..
T Consensus 50 ~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~----------~~~~~Y~~~~G~~~lr~~ia~~l~---g--~~~~~ 114 (448)
T 3meb_A 50 KKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLS----------KYNKEYPPVAGFPLFLEAAQFLMF---G--KDSKA 114 (448)
T ss_dssp TCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTT----------TTCCSCCCTTCCHHHHHHHHHHHH---C--TTCHH
T ss_pred CeEEeecccccCCCCCEechHHHHHHHHHHhhccc----------CCCCCCCCCcchHHHHHHHHHHhc---C--CCccc
Confidence 4689998764 21 2355555532221 00 124578888899999999999983 2 22
Q ss_pred cCCCcEEE--ecChHHHHHH--HHHhhcCCCCeEEEcCCCCcChHHhHh----hhcCcEEEEEecCCCC-CCcCCHHHHH
Q 046900 118 FDLNRIVV--TAGATAANEL--LTFILADPGDALLVPTPYYPGFDRDLR----WRTGIKIVPIHCDSSN-NFQITPQALE 188 (442)
Q Consensus 118 ~~~~~i~~--t~G~~~ai~~--~~~~l~~~gd~Vl~~~p~y~~~~~~~~----~~~G~~v~~v~~~~~~-~~~~d~~~l~ 188 (442)
+++++|++ |+|+++++.+ .+.+++.+||+|++++|+|+.+...++ . .|++++.+|+.+++ +|.+|++.++
T Consensus 115 ~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~~~~~~d~e~l~ 193 (448)
T 3meb_A 115 AQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNK-LKVPYKEYTYLRKDGELEIDFSNTK 193 (448)
T ss_dssp HHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCT-TTSCCEEECCBCTTSCSSBCHHHHH
T ss_pred cCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHh-CCCeEEEEeccccccCCCcCHHHHH
Confidence 23689999 9999999988 455677899999999999999998888 6 89999999984444 6889999999
Q ss_pred HHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC--CcccHHHHHhhhcCCC
Q 046900 189 AAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS--EFVSIAEILEARQYKD 266 (442)
Q Consensus 189 ~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~--~~~s~~~~~~~~~~~~ 266 (442)
+.+++. ..+++++++++||||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ...++..+...
T Consensus 194 ~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~----- 265 (448)
T 3meb_A 194 KDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDA----- 265 (448)
T ss_dssp HHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHT-----
T ss_pred HHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhc-----
Confidence 999752 12567888899999999999999999999999999999999999999887641 12344444332
Q ss_pred CCcEEEEecCcccCCCCCceeEEE--ee--------cCH----HHHHHHHHc--cccCCCcHHHHHHHHHHhcCchhHH-
Q 046900 267 SERVHIVYSLSKDLGLPGFRVGTI--YS--------YND----KVVTTARRM--SSFTLISSQTQYLLASMLSNKKFTE- 329 (442)
Q Consensus 267 ~~~vi~~~S~SK~~g~~G~RiG~i--~~--------~~~----~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~- 329 (442)
..++++++||||.||++|+|+||+ ++ +++ .+...+... ......+.+.|.++..++.+.++..
T Consensus 266 ~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~ 345 (448)
T 3meb_A 266 GVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQM 345 (448)
T ss_dssp TCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHH
T ss_pred CCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHH
Confidence 478999999999999999999998 66 444 444444432 2234567899999999999865332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhC---C------CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe
Q 046900 330 --NYIKTNRERLQKRYQMIIEGLRSA---G------IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS 398 (442)
Q Consensus 330 --~~~~~~~~~~~~~~~~l~~~L~~~---g------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~ 398 (442)
+++++++++++++|+.+.+.|++. + +.+..+++|+|+|+.++ .+++..+++++||.+.
T Consensus 346 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------~~~~~~ll~~~gV~v~ 414 (448)
T 3meb_A 346 FYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT-----------PEHVDYLKEKWSIYLV 414 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC-----------HHHHHHHHHhCCEEEe
Confidence 447888999999999999999987 3 55667899999998774 2556677777799999
Q ss_pred CCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 399 PGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 399 pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
||+ + |||++.++++++++++++|+++++++
T Consensus 415 ~G~-------g--Ris~a~~~~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 415 KAG-------G--RMSMCGLTESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp SGG-------G--EEEGGGCCTTTHHHHHHHHHHHHHHS
T ss_pred CCC-------c--EEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 975 2 99998767888999999999998743
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=345.09 Aligned_cols=334 Identities=18% Similarity=0.238 Sum_probs=249.9
Q ss_pred CCCceeeeecccccccHH-HHHHHHHhCCCCcccCCCCCCCCcccccCCCcch-----HHHHHHHHHHHHHHhCCCCccC
Q 046900 46 NPSGVIQMGLAENQVSFD-LLEEYLEQQPEASTWGKGAPGFRENALFQDYHGL-----KSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 46 ~~~~~i~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~-----~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+..++|+|+.+++.++.+ .+.+.+.+... . .......+|++..|. ++||+++|+|++. +| +.++
T Consensus 20 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~---~----~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~-~g--~~~~ 89 (391)
T 3bwn_A 20 MSDFVVNLDHGDPTAYEEYWRKMGDRCTVT---I----RGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGV-VG--NAAT 89 (391)
T ss_dssp TTTSCEECSSCCCGGGHHHHHHTGGGSCEE---E----CTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHH-HC--SBCC
T ss_pred CCCCeeEcCCCCCCCCCCHHHHHhHHHHhh---c----CccchhhcCCCCCCcccccCHHHHHHHHHHHHh-cC--CCCC
Confidence 456789999998876543 22222211110 0 000134679999998 9999999999984 44 5566
Q ss_pred C-CcEEEecChHHHHHHHHHhhcCCCC----eEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHH
Q 046900 120 L-NRIVVTAGATAANELLTFILADPGD----ALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEA 194 (442)
Q Consensus 120 ~-~~i~~t~G~~~ai~~~~~~l~~~gd----~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~ 194 (442)
+ ++|++|+|+++++.+++.+|+++|| .|++++|+|+.|...++. .|++++.++++.++ ++ .
T Consensus 90 ~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~-~g~~~~~~~~d~~~---l~--------~-- 155 (391)
T 3bwn_A 90 EDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTY-VRSGMYKWEGDAWG---FD--------K-- 155 (391)
T ss_dssp SSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHT-TCBTTEEEEEESTT---CC--------C--
T ss_pred CCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHH-cCCeEEEecCCHHH---cC--------C--
Confidence 6 5999999999999999999999999 999999999999999985 89999999887532 22 0
Q ss_pred HhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEe
Q 046900 195 ESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVY 274 (442)
Q Consensus 195 ~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~ 274 (442)
.++++|++++||||||.+++ +|++.+..++++||+||+|.+ + .+.++.. ..+++++++
T Consensus 156 ----~~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~----~-~~~~l~~--------~~~~~i~~~ 213 (391)
T 3bwn_A 156 ----KGPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW----P-HYTPITR--------RQDHDIMLF 213 (391)
T ss_dssp ----CSCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS----T-TTSCCCC--------CBCCSEEEE
T ss_pred ----CCCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC----C-CCCcccc--------CCCCeEEEE
Confidence 27889999999999999997 344422223399999999973 1 1112111 147899999
Q ss_pred cCcccCCCCCceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCch-h------HHHHHHHHHHHHHHHHHH
Q 046900 275 SLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKK-F------TENYIKTNRERLQKRYQM 345 (442)
Q Consensus 275 S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~-~------~~~~~~~~~~~~~~~~~~ 345 (442)
||||.||++|+|+||++++++.+.+.+..... .+.++++.|.++..++++.. | .+++++++++.++++++.
T Consensus 214 S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (391)
T 3bwn_A 214 TFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEK 293 (391)
T ss_dssp EHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHH
T ss_pred echhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999755677776665444 36788999999999998642 1 145788899999999999
Q ss_pred HHHHHHhC-CCeeecC-------------CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEE
Q 046900 346 IIEGLRSA-GIECLKG-------------NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWF 411 (442)
Q Consensus 346 l~~~L~~~-g~~~~~~-------------~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~i 411 (442)
+.+.|++. |+++..| ++|+|+|++++.. +.+..+++++||.+.||+.|+. .++++
T Consensus 294 l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~----------~~~~~~l~~~gV~v~pg~~fg~-~~~~i 362 (391)
T 3bwn_A 294 LREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE----------TDLVSELRRHKVMSRAGERCGS-DKKHV 362 (391)
T ss_dssp HHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS----------CCHHHHHHHTTEECEEGGGGTC-CTTEE
T ss_pred HHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH----------HHHHHHHHHCCEEEccCCCCCC-CCCEE
Confidence 99999987 5665443 4556999998741 1233445566999999999974 46899
Q ss_pred EEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 412 RVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 412 Rls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
|||++. +++++++++++|++++++.
T Consensus 363 Ris~~~-~~e~i~~~~~~L~~~~~~~ 387 (391)
T 3bwn_A 363 RVSMLS-REDVFNVFLERLANMKLIK 387 (391)
T ss_dssp EEESCS-CHHHHHHHHHHHHSCC---
T ss_pred EEEecC-CHHHHHHHHHHHHHHHHhh
Confidence 999998 8999999999999987654
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-41 Score=327.42 Aligned_cols=332 Identities=16% Similarity=0.217 Sum_probs=263.4
Q ss_pred eeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecCh
Q 046900 51 IQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGA 129 (442)
Q Consensus 51 i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~ 129 (442)
|||+.++|+++ ++.+.+.+.+...... .....|++..+ .++|+++++++++.+| .++++++|++|+|+
T Consensus 33 idl~~~~~~~~~~~~v~~a~~~~~~~~~--------~~~~~y~~~~~-~~l~~~la~~l~~~~g--~~~~~~~v~~~~G~ 101 (369)
T 3cq5_A 33 IRLNTNENPYPPSEALVADLVATVDKIA--------TELNRYPERDA-VELRDELAAYITKQTG--VAVTRDNLWAANGS 101 (369)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHHG--------GGTTSCCCTTC-HHHHHHHHHHHHHHHC--CCCCGGGEEEESHH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHhcc--------cccccCCCccH-HHHHHHHHHhhhhccc--CCCChHhEEECCCh
Confidence 89999998764 3444444443321100 01356877666 7999999999998876 44678999999999
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCC
Q 046900 130 TAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNP 209 (442)
Q Consensus 130 ~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P 209 (442)
++++..++.+++++||.|+++.|+|+.+...++. .|++++.+|.++ +|.+|++.+++.+++. ++++|++++|
T Consensus 102 ~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~-~g~~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~ 173 (369)
T 3cq5_A 102 NEILQQLLQAFGGPGRTALGFQPSYSMHPILAKG-THTEFIAVSRGA--DFRIDMDVALEEIRAK-----QPDIVFVTTP 173 (369)
T ss_dssp HHHHHHHHHHHCSTTCEEEEEESSCTHHHHHHHH-TTCEEEEEECCT--TSSCCHHHHHHHHHHH-----CCSEEEEESS
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHH-cCCEEEEecCCc--CCCCCHHHHHHHhhcc-----CCCEEEEeCC
Confidence 9999999999999999999999999999998884 899999999753 5779999999998752 6789999999
Q ss_pred CCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCC-cEEEEecCcccCCCCCceeE
Q 046900 210 SNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSE-RVHIVYSLSKDLGLPGFRVG 288 (442)
Q Consensus 210 ~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~-~vi~~~S~SK~~g~~G~RiG 288 (442)
+||||.+++.+++.+|++.| ++++|+||+|+++.++ .+...+... .+ ++++++|+||.+|++|+|+|
T Consensus 174 ~nptG~~~~~~~l~~l~~~~---~~~li~De~~~~~~~~----~~~~~~~~~-----~~~~~i~~~s~sK~~~~~G~r~G 241 (369)
T 3cq5_A 174 NNPTGDVTSLDDVERIINVA---PGIVIVDEAYAEFSPS----PSATTLLEK-----YPTKLVVSRTMSKAFDFAGGRLG 241 (369)
T ss_dssp CTTTCCCCCHHHHHHHHHHC---SSEEEEECTTGGGCCS----CCGGGGTTT-----CTTTEEEEEESSSTTSCGGGCCE
T ss_pred CCCCCCCCCHHHHHHHHHhC---CCEEEEECCchhhcCC----cchHHHHhh-----CCCCEEEEEechHhcCCcccceE
Confidence 99999999987777777755 5999999999987653 122222121 35 88999999999999999999
Q ss_pred EEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEE
Q 046900 289 TIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWM 368 (442)
Q Consensus 289 ~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~ 368 (442)
|++++ +.+.+.+......+..+++.|.++.++++.. +++++.++.++++++++.+.|++.|+++.++. |+|+|+
T Consensus 242 ~~~~~-~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~ 315 (369)
T 3cq5_A 242 YFVAN-PAFIDAVMLVRLPYHLSALSQAAAIVALRHS----ADTLGTVEKLSVERVRVAARLEELGYAVVPSE-SNFVFF 315 (369)
T ss_dssp EEEEC-THHHHHHHTTSCTTCSCHHHHHHHHHHHHTH----HHHHTHHHHHHHHHHHHHHHHHHHTCEEECCS-SSEEEE
T ss_pred EEEeC-HHHHHHHHHcCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHhCCCEECCCC-CeEEEE
Confidence 99995 5566666666666678999999999998864 35677888999999999999988888887554 558898
Q ss_pred ecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 369 NLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
+++. +..++.+.|.++ ||.+.|| + .++++||+++ +++++++++++|+++++
T Consensus 316 ~~~~--------~~~~l~~~l~~~-gi~v~~~---~--~~~~iRis~~--~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 316 GDFS--------DQHAAWQAFLDR-GVLIRDV---G--IAGHLRTTIG--VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp ECCS--------SHHHHHHHHHHT-TEECBCC---S--CTTEEEEECC--CHHHHHHHHHHHHHHHT
T ss_pred ECCC--------CHHHHHHHHHHC-CEEEEEC---C--CCCeEEEEeC--CHHHHHHHHHHHHHHHh
Confidence 8862 256788888655 9999998 1 2578999998 57889999999998764
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=332.88 Aligned_cols=346 Identities=16% Similarity=0.183 Sum_probs=254.2
Q ss_pred eeeeeccc------ccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcE
Q 046900 50 VIQMGLAE------NQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRI 123 (442)
Q Consensus 50 ~i~l~~~~------n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i 123 (442)
.|||+++. ++..++.++++.....+. .....|.+..|+++||+++++++... .........
T Consensus 46 kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~----------~~~~~Y~p~~G~p~lr~aia~~~~g~---~~~~~~~~~ 112 (420)
T 4h51_A 46 KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDM----------NLDYEYLPISGYQPFIDEAVKIIYGN---TVELENLVA 112 (420)
T ss_dssp CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHT----------TCCCCCCCTTCCHHHHHHHHHHHHC------CGGGEEE
T ss_pred CEEeecCcccCCCCCCCCCHHHHHHHHHHhcC----------CCCCCCCCcCChHHHHHHHHHHhcCC---Cccccccce
Confidence 58999983 222346676654433211 12346999999999999999987532 111122234
Q ss_pred EEecChHHHHHHHH----HhhcCCCCeEEEcCCCCcChHHhHhhhcCcE-EEEEecCCCCCCcCCHHHHHHHHHHHHhcC
Q 046900 124 VVTAGATAANELLT----FILADPGDALLVPTPYYPGFDRDLRWRTGIK-IVPIHCDSSNNFQITPQALEAAYKEAESKD 198 (442)
Q Consensus 124 ~~t~G~~~ai~~~~----~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~-v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 198 (442)
+.|.|++.++...+ +.+.+|||.|++++|+|+.|...++. .|++ +..++..+++++.+|.+.+.+.+... .
T Consensus 113 ~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~-aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~---~ 188 (420)
T 4h51_A 113 VQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKA-AGWKNICTYAYYDPKTVSLNFEGMKKDILAA---P 188 (420)
T ss_dssp EEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHH-TTCCCEEEEECEEGGGTEECHHHHHHHHHHS---C
T ss_pred eeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHH-cCCeEEEeeccccccccCCCHHHHHHHHhcc---C
Confidence 55788887776554 44567999999999999999999995 8886 44455544556788999999888753 3
Q ss_pred CceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc--HHHHHhhhcCCCCCcEEEEecC
Q 046900 199 MRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS--IAEILEARQYKDSERVHIVYSL 276 (442)
Q Consensus 199 ~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s--~~~~~~~~~~~~~~~vi~~~S~ 276 (442)
.+++++++++||||||.+++.+++++|+++|+++++++|+||+|.+|.+++....+ ....... ..+++++.||
T Consensus 189 ~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~s~ 263 (420)
T 4h51_A 189 DGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARR-----GIEVLLAQSF 263 (420)
T ss_dssp SSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT-----TCCCEEEEEC
T ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhh-----CceEEEEecc
Confidence 46677888899999999999999999999999999999999999999886532222 2222222 4789999999
Q ss_pred cccCCCCCceeEEEeecCHHHHHH------HHH--ccccCCCcHHHHHHHHHHhcCchhH---HHHHHHHHHHHHHHHHH
Q 046900 277 SKDLGLPGFRVGTIYSYNDKVVTT------ARR--MSSFTLISSQTQYLLASMLSNKKFT---ENYIKTNRERLQKRYQM 345 (442)
Q Consensus 277 SK~~g~~G~RiG~i~~~~~~~~~~------~~~--~~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~ 345 (442)
||.|+++|+|+||++++.+..... +.. .......+...|.++..++.++... +++++.++++++++|+.
T Consensus 264 SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~ 343 (420)
T 4h51_A 264 SKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRT 343 (420)
T ss_dssp TTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998855433222 111 1223556778899999999986543 34567789999999999
Q ss_pred HHHHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHH
Q 046900 346 IIEGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQ 421 (442)
Q Consensus 346 l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e 421 (442)
+.+.|++.| |.+..+++|||.|+.++. +.++.| +++||.+.||+ |||++.++++
T Consensus 344 l~~~L~~~g~~~~~~~i~~q~GmF~~~gls~-----------e~v~~L-~e~~Vy~~~~g----------Ris~Agl~~~ 401 (420)
T 4h51_A 344 VYDELLRLQTPGSWEHVINQIGMFSFLGLSK-----------AQCEYC-QNHNIFITVSG----------RANMAGLTHE 401 (420)
T ss_dssp HHHHHHHTTCSSCCTHHHHCCSSEEECCCCH-----------HHHHHH-HHTTEECCTTC----------EEEGGGCCHH
T ss_pred HHHHHHHhCCCCCCCeecCCCceEEecCcCH-----------HHHHHH-HhCCEEEcCCC----------EEEeccCCHH
Confidence 999999875 445678899999976642 234444 56699988742 9999988999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 046900 422 TLEVALKRIHNFMQKRER 439 (442)
Q Consensus 422 ~i~~~l~~l~~~l~~~~~ 439 (442)
.++.+.++|.+++++.++
T Consensus 402 ni~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 402 TALMLAQTINDAVRNVNR 419 (420)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999987654
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-41 Score=324.71 Aligned_cols=330 Identities=17% Similarity=0.269 Sum_probs=260.0
Q ss_pred CCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
..++|+|+.++|+++. +.+.+.+.+..... + .....|++. +..++|+++|++++ +++++|++
T Consensus 25 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~----~~~~~y~~~-~~~~lr~~la~~~g--------~~~~~i~~ 87 (360)
T 3hdo_A 25 IASWIKLNTNENPYPPSPEVVKAILEELGPD----G----AALRIYPSA-SSQKLREVAGELYG--------FDPSWIIM 87 (360)
T ss_dssp CTTSEECSSCCCSSCCCHHHHHHHHHHHTTT----C----GGGGSCCCS-SCHHHHHHHHHHHT--------CCGGGEEE
T ss_pred ccceeeccCCCCCCCCCHHHHHHHHHHHhcc----c----chhhcCCCC-chHHHHHHHHHHhC--------cCcceEEE
Confidence 4578999999998853 55565555433210 0 114567665 56999999999985 67899999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++.+++.+++++||.|+++.|+|..+...++. .|++++.++++++ +.+ +++++. .++++++
T Consensus 88 t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~v~~~~~--~~~--~~l~~~--------~~~~~v~ 154 (360)
T 3hdo_A 88 ANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEV-QGARVRTFGLTGD--FRI--AGFPER--------YEGKVFF 154 (360)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHH-HTCEEEEECBCTT--SSB--TTCCSS--------BCSSEEE
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHH-CCCEEEEeeCCCC--CCH--HHHHhh--------cCCCEEE
Confidence 99999999999999999999999999999999998885 8999999998653 444 444322 2467899
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.+++.+++. ++|+++++++|+||+|+++. +....+. ... .+++++++|+||.+|++|+
T Consensus 155 i~~p~nptG~~~~~~~l~---~l~~~~~~~li~De~~~~~~--~~~~~~~---~~~-----~~~~i~~~s~sK~~g~~G~ 221 (360)
T 3hdo_A 155 LTTPNAPLGPSFPLEYID---ELARRCAGMLVLDETYAEFA--ESNALEL---VRR-----HENVVVTRTLSKSYSLAGM 221 (360)
T ss_dssp EESSCTTTCCCCCHHHHH---HHHHHBSSEEEEECTTGGGS--SCCCTHH---HHH-----CSSEEEEEESTTTTSCTTS
T ss_pred EeCCCCCCCCCcCHHHHH---HHHHHCCCEEEEECChHhhC--CcchhHH---hcc-----CCCEEEEecchHhhcCCcc
Confidence 999999999999976555 55568899999999999853 3323232 222 4789999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEE
Q 046900 286 RVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLF 365 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~ 365 (442)
|+||+++ ++.+.+.+......+..+++.|.++.+++++.+ ++++.++.++++++.+.+.|++.|+.+.++.+ .|
T Consensus 222 r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~ 295 (360)
T 3hdo_A 222 RIGLAIA-RPEVIAALDKIRDHYNLDRLAQAACVAALRDQA----YLSECCRRIRETREWFTTELRSIGYDVIPSQG-NY 295 (360)
T ss_dssp CCEEEEC-CHHHHHHHHHHSCSCCSCHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHHHHHHHTTCEECCCSS-SE
T ss_pred ceeeEee-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHCCCEEcCCCc-cE
Confidence 9999999 677888887776777889999999999998643 57788899999999999999988888876655 57
Q ss_pred EEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 366 CWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+|+.++.. +..++.+.|.++ ||.+.||..+ ..++++||+++ ++++++++++.|+++.+.+
T Consensus 296 ~~~~~~~~-------~~~~l~~~l~~~-gi~v~~~~~~--~~~~~iRis~~--~~~e~~~l~~al~~~~~~~ 355 (360)
T 3hdo_A 296 LFATPPDR-------DGKRVYDGLYAR-KVLVRHFSDP--LLAHGMRISIG--TREEMEQTLAALKEIGEGH 355 (360)
T ss_dssp EEEECTTC-------CHHHHHHHHHHT-TEECBCCCST--TTTTSEEEECC--CHHHHHHHHHHHHHHHC--
T ss_pred EEEECCCC-------CHHHHHHHHHHC-CEEEEECCCC--CCCCEEEEEcC--CHHHHHHHHHHHHHHhccc
Confidence 88887642 256788888665 9999998762 34589999998 4888999999999887654
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-42 Score=336.35 Aligned_cols=341 Identities=14% Similarity=0.197 Sum_probs=262.1
Q ss_pred Cceeeeecccc----c--ccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 48 SGVIQMGLAEN----Q--VSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 48 ~~~i~l~~~~n----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
.++|||+.+.. . .+++.+.+.+.+.... .....|++..|..++|+++|+++.. ..++++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----------~~~~~y~~~~g~~~lr~~la~~~~~-----~~~~~~ 90 (394)
T 2ay1_A 26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET----------ETTKTYAGLSGEPEFQKAMGELILG-----DGLKSE 90 (394)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH----------CCCCCCCCSSCCHHHHHHHHHHHHG-----GGCCGG
T ss_pred ccccccccceeeCCCCCccCcHHHHHHHHHhcCC----------cccCCCCCCCCcHHHHHHHHHHHhC-----CCCCcc
Confidence 46799999872 1 3346666655543210 0235688888999999999999852 123688
Q ss_pred cEEE--ecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhc
Q 046900 122 RIVV--TAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESK 197 (442)
Q Consensus 122 ~i~~--t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 197 (442)
+|++ |+|+++++.+++.++.. +||.|+++.|+|+.+...++. .|++++.++++.++++.+|++.+++.+++.
T Consensus 91 ~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~--- 166 (394)
T 2ay1_A 91 TTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNF-MGLPVQTYRYFDAETRGVDFEGMKADLAAA--- 166 (394)
T ss_dssp GEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHH-HTCCEEEEECEETTTTEECHHHHHHHHHTC---
T ss_pred cEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH-cCCceEEEecccccCCccCHHHHHHHHHhC---
Confidence 9999 99999999999987754 999999999999999998885 899999999864456789999999998741
Q ss_pred CCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC-CcccHHHHHhhhcCCCCCcEEEEecC
Q 046900 198 DMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS-EFVSIAEILEARQYKDSERVHIVYSL 276 (442)
Q Consensus 198 ~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~S~ 276 (442)
..+++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+++.+++. ...++..+... .+++++++|+
T Consensus 167 ~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~s~ 241 (394)
T 2ay1_A 167 KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASR-----IPEVLIAASC 241 (394)
T ss_dssp CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHH-----CSSEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhc-----CCCEEEEEec
Confidence 12356777899999999999999999999999999999999999999877531 22344444432 3678999999
Q ss_pred cccCCCCCceeEEEee--cCHHHH----HHHHHc--cccCCCcHHHHHHHHHHhcCch---hHHHHHHHHHHHHHHHHHH
Q 046900 277 SKDLGLPGFRVGTIYS--YNDKVV----TTARRM--SSFTLISSQTQYLLASMLSNKK---FTENYIKTNRERLQKRYQM 345 (442)
Q Consensus 277 SK~~g~~G~RiG~i~~--~~~~~~----~~~~~~--~~~~~~s~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~ 345 (442)
||.+|++|+|+||+++ +++.+. ..+... ..+...+++.|.++.+++++.. ...++++++++.+++++++
T Consensus 242 sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 321 (394)
T 2ay1_A 242 SKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQ 321 (394)
T ss_dssp TTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997 444432 222221 2233458899999999998752 1245788889999999999
Q ss_pred HHHHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHH
Q 046900 346 IIEGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQ 421 (442)
Q Consensus 346 l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e 421 (442)
+.+.|++.+ +++..+.+|+|+|++++. ..+ ..+++++||.+.|| +||+++..+++
T Consensus 322 l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~~-~~~l~~~gi~v~~~----------~Ris~~~~~~~ 380 (394)
T 2ay1_A 322 LAGELRDLSGSDRFGFVAEHRGMFSRLGATP----------EQV-KRIKEEFGIYMVGD----------SRINIAGLNDN 380 (394)
T ss_dssp HHHHHHHHHTSSTTTHHHHCCSSEEECCCCH----------HHH-HHHHHHHCEECCTT----------CEEEGGGCCTT
T ss_pred HHHHHHhcCCCCCeeEEcCCceEEEeeCCCH----------HHH-HHHHHhCCEEecCC----------CeEEeecCCHh
Confidence 999998764 777778889999987642 234 44444559999874 59999855889
Q ss_pred HHHHHHHHHHHH
Q 046900 422 TLEVALKRIHNF 433 (442)
Q Consensus 422 ~i~~~l~~l~~~ 433 (442)
++++++++|+++
T Consensus 381 ~i~~~~~~l~~~ 392 (394)
T 2ay1_A 381 TIPILARAIIEV 392 (394)
T ss_dssp THHHHHHHHHHH
T ss_pred hHHHHHHHHHHc
Confidence 999999999875
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=320.89 Aligned_cols=316 Identities=16% Similarity=0.271 Sum_probs=252.7
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
+.++|+|+.++++++ ++.+.+.+.+.... .....|++. +..++|+++|+++++. .+++++|++
T Consensus 18 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----------~~~~~y~~~-~~~~lr~~la~~~~~~-----~~~~~~v~~ 81 (335)
T 1uu1_A 18 KRDKTYLALNENPFPFPEDLVDEVFRRLNS----------DALRIYYDS-PDEELIEKILSYLDTD-----FLSKNNVSV 81 (335)
T ss_dssp CCCSEEESSCCCSSCCCHHHHHHHHHTCCG----------GGGGSCCCS-SCHHHHHHHHHHHTCS-----SCCGGGEEE
T ss_pred CCcceECCCCCCCCCCCHHHHHHHHHHhhh----------hhhhcCCCC-chHHHHHHHHHHcCCC-----CCCHHHEEE
Confidence 357899999998764 46666666655421 123568664 6899999999999742 256889999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++.++++++ ||+|+++ |+|+.+...++. .|++++.+|+++ +|.+|+++| + ++++|+
T Consensus 82 ~~G~~~al~~~~~~~---gd~Vl~~-p~y~~~~~~~~~-~g~~~~~v~~~~--~~~~d~~~l-----~------~~~~v~ 143 (335)
T 1uu1_A 82 GNGADEIIYVMMLMF---DRSVFFP-PTYSCYRIFAKA-VGAKFLEVPLTK--DLRIPEVNV-----G------EGDVVF 143 (335)
T ss_dssp ESSHHHHHHHHHHHS---SEEEECS-SSCHHHHHHHHH-HTCEEEECCCCT--TSCCCCCCC-----C------TTEEEE
T ss_pred cCChHHHHHHHHHHh---CCcEEEC-CCcHHHHHHHHH-cCCeEEEeccCC--CCCCCHHHc-----C------CCCEEE
Confidence 999999999999988 8999999 999999988884 899999999864 467887776 1 678999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+++|+||||.+++.+++++|+++| + ++|+||+|+++.+. .+.+ .... .+++++++|+||.+|++|+
T Consensus 144 l~~p~nptG~~~~~~~l~~l~~~~---~-~li~De~~~~~~~~--~~~~---~~~~-----~~~~i~~~s~sK~~g~~G~ 209 (335)
T 1uu1_A 144 IPNPNNPTGHVFEREEIERILKTG---A-FVALDEAYYEFHGE--SYVD---FLKK-----YENLAVIRTFSKAFSLAAQ 209 (335)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHTT---C-EEEEECTTHHHHCC--CCGG---GGGT-----CSSEEEEEESTTTTTCGGG
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhC---C-EEEEECcchhhcch--hHHH---Hhhh-----CCCEEEEecchhhcCCccc
Confidence 999999999999999999998877 7 89999999976532 2112 1121 4788999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEE
Q 046900 286 RVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLF 365 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~ 365 (442)
|+||+++ ++.+.+.++.....+..+++.|.++.++++.. +++++.++.++++++++.+.|++.|+++.+ .+++|
T Consensus 210 r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~ 283 (335)
T 1uu1_A 210 RVGYVVA-SEKFIDAYNRVRLPFNVSYVSQMFAKVALDHR----EIFEERTKFIVEERERMKSALREMGYRITD-SRGNF 283 (335)
T ss_dssp CCEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CCSSE
T ss_pred CeEEEEe-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHCCcEEcC-CCCeE
Confidence 9999999 67777777766666788999999999999863 346777888999999999999887877654 45678
Q ss_pred EEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHH
Q 046900 366 CWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~ 433 (442)
+|++++. . +..++++.|+++ ||.+.| .++++||+++. ++++++++++|+++
T Consensus 284 ~~~~~~~-~------~~~~~~~~l~~~-gi~v~~-------~~~~iRis~~~--~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 284 VFVFMEK-E------EKERLLEHLRTK-NVAVRS-------FREGVRITIGK--REENDMILRELEVF 334 (335)
T ss_dssp EEEECCT-H------HHHHHHHHHHHH-TEEEEE-------ETTEEEEECCC--HHHHHHHHHHHHCC
T ss_pred EEEECCC-C------CHHHHHHHHHHC-CEEEEE-------CCCeEEEEeCC--HHHHHHHHHHHHhh
Confidence 9999875 1 356788888876 999998 24689999975 57799999998764
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=306.88 Aligned_cols=344 Identities=12% Similarity=0.063 Sum_probs=262.0
Q ss_pred CCCceeeeecccc-cc-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcE
Q 046900 46 NPSGVIQMGLAEN-QV-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRI 123 (442)
Q Consensus 46 ~~~~~i~l~~~~n-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i 123 (442)
++.++|||+.+++ .+ +++.+.+.+.+...... .....|++..|..++++++++++.+.++ .+++
T Consensus 41 ~g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~--------~~~~~~~~~~g~~~~~~~l~~~la~~~g------~~~v 106 (398)
T 3a2b_A 41 DGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYG--------TGCAGSRFLNGTLDIHVELEEKLSAYVG------KEAA 106 (398)
T ss_dssp TTEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHC--------SCCCSBTTTTCCCHHHHHHHHHHHHHHT------CSEE
T ss_pred CCceEEEeecccccCCCCCHHHHHHHHHHHHHcC--------CCCCCcCcccCCcHHHHHHHHHHHHHhC------CCcE
Confidence 3567899999977 44 44555554443321100 0123466667888999999999998766 3689
Q ss_pred EEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 124 VVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 124 ~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
++|+|+++++..++.+++++||.|+++.|+|+.+...++. .|++++.+|+ +|++.|++.+++... .++++
T Consensus 107 ~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~-~g~~~~~v~~-------~d~~~l~~~l~~~~~--~~~~~ 176 (398)
T 3a2b_A 107 ILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRL-SFSKVIKYGH-------NNMEDLRAKLSRLPE--DSAKL 176 (398)
T ss_dssp EEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHHH-SSSEEEEECT-------TCHHHHHHHHHTSCS--SSCEE
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHH-cCCceEEeCC-------CCHHHHHHHHHhhcc--CCceE
Confidence 9999999999999999999999999999999999999885 8999999985 478999998874210 16789
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCc-EEEEecCcccCCC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSER-VHIVYSLSKDLGL 282 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~-vi~~~S~SK~~g~ 282 (442)
|++++|+||||.+++ +++|+++|++||++||+||+|+.+.++. ...++.+... ..++ +++++||||.+|+
T Consensus 177 v~~~~~~nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~-----~~~~~di~~~s~sK~~~~ 247 (398)
T 3a2b_A 177 ICTDGIFSMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGH-KGAGTASHFG-----LNDDVDLIMGTFSKSLAS 247 (398)
T ss_dssp EEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSG-GGCCHHHHHT-----CGGGCSEEEEESSSTTCS
T ss_pred EEEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCC-CCCchHhhcC-----CCcCCeEEEecccccccC
Confidence 999999999999998 7888999999999999999999877642 1234433321 1234 5899999999997
Q ss_pred CCceeEEEeecCHHHHHHHHHc-c--ccCCCcHHHHH-HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 046900 283 PGFRVGTIYSYNDKVVTTARRM-S--SFTLISSQTQY-LLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECL 358 (442)
Q Consensus 283 ~G~RiG~i~~~~~~~~~~~~~~-~--~~~~~s~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 358 (442)
+| ||+++ ++.+.+.+... . .....+++.|. ++..+++.. +++++.++.++++++++.+.|++.|+++.
T Consensus 248 ~G---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 319 (398)
T 3a2b_A 248 LG---GFVAG-DADVIDFLKHNARSVMFSASMTPASVASTLKALEII----QNEPEHIEKLWKNTDYAKAQLLDHGFDLG 319 (398)
T ss_dssp SC---EEEEE-CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH----HHCTHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred CC---cEEEe-CHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 78 99999 56666666542 1 22334556665 445666532 24567888999999999999998888887
Q ss_pred cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC-CCCEEEEEeec-CCHHHHHHHHHHHHHHHHH
Q 046900 359 KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS-EPGWFRVCFAN-MSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 359 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~-~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~ 436 (442)
.+. |+|+|+.++... +..++++.|+++ ||.+.||..|... ..+++||+++. .+++++++++++|++++++
T Consensus 320 ~~~-g~~~~~~~~~~~------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 320 ATE-SPILPIFIRSNE------KTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp SCC-SSEEEEECCCHH------HHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCC-CCEEEEEcCCHH------HHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 666 578999987521 367888999888 9999999988532 35789999984 4899999999999999876
Q ss_pred HH
Q 046900 437 RE 438 (442)
Q Consensus 437 ~~ 438 (442)
+.
T Consensus 392 ~~ 393 (398)
T 3a2b_A 392 AE 393 (398)
T ss_dssp CC
T ss_pred hC
Confidence 54
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=288.57 Aligned_cols=346 Identities=16% Similarity=0.106 Sum_probs=249.1
Q ss_pred CCceeeeeccccccc---HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcE
Q 046900 47 PSGVIQMGLAENQVS---FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRI 123 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i 123 (442)
...+|||+.+ ++++ ++.+.+.+.+....... ........|+...+..++|+.++++++ . ++.|
T Consensus 42 g~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~~~~----~~~~~~~~~g~~~~~~~l~~~la~~~~--------~-~~~i 107 (399)
T 3tqx_A 42 EKEVLNFCAN-NYLGLADHPALIKTAQTVVEQYGF----GMASVRFICGTQTIHKELEKDISEFLG--------T-DDTI 107 (399)
T ss_dssp TEEEEECSSC-CTTSCTTCHHHHHHHHHHHHHHCS----CCCSCCCCCCCBHHHHHHHHHHHHHHT--------C-SEEE
T ss_pred CeeEEEeecc-CcccccCCHHHHHHHHHHHHHhCC----CCCCcCccccCchHHHHHHHHHHHHHC--------C-CcEE
Confidence 4578999998 4433 34444444332211000 000011123344557888888888875 2 3466
Q ss_pred EEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 124 VVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 124 ~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
++++| ++++..++.+++++||.|+++.|+|+.+...++. .|++++.++. .|++.|++.+++....+.++++
T Consensus 108 ~~~sG-t~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~-~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~ 178 (399)
T 3tqx_A 108 LYSSC-FDANGGLFETLLGPEDAIISDELNHASIIDGIRL-CKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKL 178 (399)
T ss_dssp EESCH-HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHS-CCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEE
T ss_pred EECch-HHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHH-cCCceeEeCC-------CCHHHHHHHHHhhhccCCCceE
Confidence 66655 7799999999999999999999999999999885 9999999985 4678999999876544447899
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
|++++|+||||.+++ +++|+++|++||+++|+||+|+...++. ...+..+...- ..+..++++|+||.+|
T Consensus 179 v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~----~~~~di~~~s~sK~~~-- 248 (399)
T 3tqx_A 179 IATDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGE-NGRGTPEYCGV----ADRVDILTGTLGKALG-- 248 (399)
T ss_dssp EEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSST-TSCCHHHHHTC----TTCCSEEEEESSSSSC--
T ss_pred EEEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCC-CCCchHHhhCC----CCCCcEEEecchHhcc--
Confidence 999999999999999 8899999999999999999997433332 22334433220 1245688999999997
Q ss_pred CceeEEEeecCHHHHHHHHHccc----cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 046900 284 GFRVGTIYSYNDKVVTTARRMSS----FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK 359 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~~----~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 359 (442)
|++.||+++ ++.+.+.+..... ....+++.+.++.+.++.. .++.++.++.++++++++.+.|++.|+++.+
T Consensus 249 g~~gG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 324 (399)
T 3tqx_A 249 GASGGYTSG-HKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELL---KTEGPQLRKQLQENSRYFRAGMEKLGFQLVP 324 (399)
T ss_dssp SSCCEEEEE-CHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHHHHHHHHHHTCCBCC
T ss_pred cCceEEEEc-CHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 445599999 5566666554321 1245666666666666532 2456788999999999999999998988876
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCC-CCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCH-CSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~-~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+.++ ++|+.++... +..++++.|+++ ||.+.|+..+. ..+.+++||+++ ..+++++++++++|++++++.
T Consensus 325 ~~~~-~~~~~~~~~~------~~~~~~~~l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 325 GNHP-IIPVMLGDAQ------LATNMADHLLQE-GIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp CSSS-EEEEEEECHH------HHHHHHHHHHHT-TEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCC-EEEEEeCCHH------HHHHHHHHHHHC-CCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 6665 7788876532 367888999886 99999875443 234579999997 448999999999999998764
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=279.56 Aligned_cols=305 Identities=15% Similarity=0.176 Sum_probs=241.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcC--hHHhHhhhcCcEEEEEec
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPG--FDRDLRWRTGIKIVPIHC 174 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~--~~~~~~~~~G~~v~~v~~ 174 (442)
..++++++++++.+.+| .+ ++++|++|+|+++++..++.+++++||.|+++.|+|++ +...+.. .|++++.+++
T Consensus 51 ~~~~~~~~~~~la~~~g--~~-~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~-~g~~~~~v~~ 126 (386)
T 2dr1_A 51 YRKVHMDTVERLREFLE--VE-KGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVES-NGRKAVVLEY 126 (386)
T ss_dssp HHHHHHHHHHHHHHHHT--CS-SSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhC--CC-CCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHHH-hCCceEEEec
Confidence 47889999999988877 22 36789999999999999999999999999999999988 7777774 8999999998
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s 254 (442)
+. ++.+|+++|++.+++ +.++++|++++|+||||.+.+ +++|+++|++||+++|+||+|+.+.+. .+
T Consensus 127 ~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~----~~ 193 (386)
T 2dr1_A 127 EP--GKAVKPEDLDDALRK----NPDVEAVTITYNETSTGVLNP---LPELAKVAKEHDKLVFVDAVSAMGGAD----IK 193 (386)
T ss_dssp CT--TCCCCHHHHHHHHHH----CTTCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBC----CC
T ss_pred CC--CCCCCHHHHHHHHhc----CCCCcEEEEEeecCCcchhCC---HHHHHHHHHHcCCeEEEEccccccCcc----cc
Confidence 75 467899999999964 237899999999999999988 788899999999999999999965431 12
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHH----------------H----ccccCCCcHHH
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTAR----------------R----MSSFTLISSQT 314 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~----------------~----~~~~~~~s~~~ 314 (442)
+ . ..+.++++.|+||.++.++ ++||++++ +.+.+.++ . ....+..+++.
T Consensus 194 ~---~------~~~~di~~~s~sK~~~~~~-g~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (386)
T 2dr1_A 194 F---D------KWGLDVVFSSSQKAFGVPP-GLAIGAFS-ERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQ 262 (386)
T ss_dssp T---T------TTTCSEEEEETTSTTCCCS-SCEEEEEC-HHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHH
T ss_pred c---c------ccCCcEEEEeccccccCCC-ceEEEEEC-HHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHH
Confidence 1 1 1255788999999998552 48999995 55554431 1 12235667788
Q ss_pred HHHHHHHhcCchhHHH--HHHHHHHHHHHHHHHHHHHHHhCCCeeecCC---ceEEEEEecCCcccccChhhHHHHHHHH
Q 046900 315 QYLLASMLSNKKFTEN--YIKTNRERLQKRYQMIIEGLRSAGIECLKGN---AGLFCWMNLSPLLEEQTREGELALWDSM 389 (442)
Q Consensus 315 q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~l~~~l 389 (442)
|.++..+++. ..+ .+++.+++++++++++.+.|++.|+++..++ .+.++|+.++... +..++++.|
T Consensus 263 ~~a~~~~l~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l 333 (386)
T 2dr1_A 263 VFGINVALRI---IEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTITAVLTPPGI------KGDEVYEAM 333 (386)
T ss_dssp HHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCTTC------CHHHHHHHH
T ss_pred HHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCceEEEEcCCCC------CHHHHHHHH
Confidence 8888877763 223 2667888999999999999998888877664 3678899987432 267888899
Q ss_pred HHcCcEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHHHhhc
Q 046900 390 LHEVKLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKRERRR 441 (442)
Q Consensus 390 ~~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~~~~~ 441 (442)
+++ ||.+.||..|. ..+++||+++. .+++++++++++|++++++...++
T Consensus 334 ~~~-gi~v~~~~~~~--~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 383 (386)
T 2dr1_A 334 RKR-GFELAKGYGSV--KEKTFRIGHMGYMKFEDIQEMLDNLREVINELKKQK 383 (386)
T ss_dssp HHT-TEECEECCGGG--TTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHC-CeEEecCcccc--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 888 99999998653 35799999983 489999999999999998876543
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-35 Score=287.17 Aligned_cols=342 Identities=17% Similarity=0.110 Sum_probs=248.8
Q ss_pred CCCceeeeeccccccc---HHHHHHHHHhCCCCcccCCCCCCCCcccccC--CCcchHHHHHHHHHHHHHHhCCCCccCC
Q 046900 46 NPSGVIQMGLAENQVS---FDLLEEYLEQQPEASTWGKGAPGFRENALFQ--DYHGLKSFRQAMASFMEQIRGGRAKFDL 120 (442)
Q Consensus 46 ~~~~~i~l~~~~n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 120 (442)
+...+|||+.+ ++++ ++.+.+.+.+.... . +.. .....|+ ...+..++|++++++++ ++
T Consensus 43 ~g~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~--~--~~~--~~~~~~~~g~~~~~~~l~~~la~~~g--------~~- 106 (401)
T 1fc4_A 43 DGSHVINFCAN-NYLGLANHPDLIAAAKAGMDS--H--GFG--MASVRFICGTQDSHKELEQKLAAFLG--------ME- 106 (401)
T ss_dssp TSCEEEECCCS-CTTSCTTCHHHHHHHHHHHHH--H--CSC--CCSCHHHHCCBHHHHHHHHHHHHHHT--------CS-
T ss_pred CCccEEEeecc-CcccccCCHHHHHHHHHHHHH--h--CCC--CCCCCcccCCcHHHHHHHHHHHHHhC--------CC-
Confidence 45678999988 5553 45555544433211 0 000 0011232 24578899999999984 33
Q ss_pred CcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCc
Q 046900 121 NRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMR 200 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 200 (442)
++|++++| ++++..++++++++||.|+++.|+|+.+...++. .|++++.++. .|++.|++.+++..+.+.+
T Consensus 107 ~~i~~~sG-s~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~-~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~ 177 (401)
T 1fc4_A 107 DAILYSSC-FDANGGLFETLLGAEDAIISDALNHASIIDGVRL-CKAKRYRYAN-------NDMQELEARLKEAREAGAR 177 (401)
T ss_dssp EEEEESCH-HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHT-SCSEEEEECT-------TCHHHHHHHHHHHHHTTCS
T ss_pred cEEEeCCh-HHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHH-cCCceEEECC-------CCHHHHHHHHHHhhccCCC
Confidence 56666665 6688889999999999999999999888888884 8999998872 4789999998764333336
Q ss_pred eeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCC-cCCC-CCCCcccHHHHHhhhcCCCCCcEEEEecCcc
Q 046900 201 VRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYS-GSAF-SSSEFVSIAEILEARQYKDSERVHIVYSLSK 278 (442)
Q Consensus 201 ~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~-~~~~-~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK 278 (442)
+++|++++|+||||.+++ +++|.++|+++|+++|+||+|+ ++.+ ++..+.+...+ ..+.+++++|+||
T Consensus 178 ~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~-------~~~~di~~~s~sK 247 (401)
T 1fc4_A 178 HVLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDV-------MGRVDIITGTLGK 247 (401)
T ss_dssp SEEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTC-------TTCCSEEEEESSS
T ss_pred ceEEEEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCC-------CcCCcEEEecchh
Confidence 789999999999999999 8888999999999999999996 6653 33322111111 1245688999999
Q ss_pred cC-CCCCceeEEEeecCHHHHHHHHHccc----cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 279 DL-GLPGFRVGTIYSYNDKVVTTARRMSS----FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 279 ~~-g~~G~RiG~i~~~~~~~~~~~~~~~~----~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
.+ |.+| ||+++ ++.+.+.+..... .+..+++.|.++.+.++... + .++.++.++++++++.+.|++.
T Consensus 248 ~~~~~~g---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~-~~~~~~~~~~~~~~l~~~L~~~ 319 (401)
T 1fc4_A 248 ALGGASG---GYTAA-RKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVE---A-GSELRDRLWANARQFREQMSAA 319 (401)
T ss_dssp TTCSSSC---EEEEE-CHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHH---T-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCCC---EEEEc-CHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHh---c-CHHHHHHHHHHHHHHHHHHHHc
Confidence 99 5454 99999 5666666654331 23567888888887776321 1 3567788899999999999988
Q ss_pred CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC-CCCEEEEEee-cCCHHHHHHHHHHHH
Q 046900 354 GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS-EPGWFRVCFA-NMSEQTLEVALKRIH 431 (442)
Q Consensus 354 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~-~~~~iRls~~-~~~~e~i~~~l~~l~ 431 (442)
|+++. +..++++|++++... +..++++.|.++ ||.+.||..|+.. ..+++||+++ ..+++++++++++|+
T Consensus 320 g~~~~-~~~~~~~~~~~~~~~------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 391 (401)
T 1fc4_A 320 GFTLA-GADHAIIPVMLGDAV------VAQKFARELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFT 391 (401)
T ss_dssp TCCBC-CSSSSEEEEEEECHH------HHHHHHHHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCccc-CCCCCEEEEEcCChH------HHHHHHHHHHHC-CcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 88877 455668899886421 366788888777 9999999877543 2468999998 238999999999999
Q ss_pred HHHHHHH
Q 046900 432 NFMQKRE 438 (442)
Q Consensus 432 ~~l~~~~ 438 (442)
+++++.+
T Consensus 392 ~~~~~~~ 398 (401)
T 1fc4_A 392 RIGKQLG 398 (401)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9988654
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=283.58 Aligned_cols=298 Identities=15% Similarity=0.151 Sum_probs=236.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCC-cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcC--hHHhHhhhcCcEEEEEe
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLN-RIVVTAGATAANELLTFILADPGDALLVPTPYYPG--FDRDLRWRTGIKIVPIH 173 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~-~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~--~~~~~~~~~G~~v~~v~ 173 (442)
..++++++++++.+.+| ++++ +|++|+|+++++..++.+++++||.|++++|+|+. +...++. .|++++.++
T Consensus 65 ~~~~~~~~~~~la~~~g----~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~-~g~~~~~v~ 139 (393)
T 1vjo_A 65 FLALMDEIQSLLRYVWQ----TENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGR-YGADVRTIS 139 (393)
T ss_dssp HHHHHHHHHHHHHHHHT----CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhC----CCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHHH-cCCceEEEe
Confidence 57889999999988876 4677 99999999999999999999999999999999998 8888884 899999999
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
++. ++.+|++.|++.+++. ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|+ ++.. ..
T Consensus 140 ~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~---~g~~-~~ 205 (393)
T 1vjo_A 140 KPW--GEVFSLEELRTALETH-----RPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTS---LGGV-PI 205 (393)
T ss_dssp CCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTT---TTTS-CC
T ss_pred cCC--CCCCCHHHHHHHHhhC-----CceEEEEeccCCCcceecc---HHHHHHHHHHcCCEEEEECCcc---ccCc-CC
Confidence 875 4678999999999753 5789999999999999998 7788899999999999999998 2221 11
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc---------------------cccC-CCc
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM---------------------SSFT-LIS 311 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~---------------------~~~~-~~s 311 (442)
++ . ..+..+++.|+||.++.+| |+||++++ +.+.+.++.. ...+ ..+
T Consensus 206 ~~---~------~~~~di~~~s~sK~l~~~~-~~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (393)
T 1vjo_A 206 FL---D------AWGVDLAYSCSQKGLGCSP-GASPFTMS-SRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAP 274 (393)
T ss_dssp CT---T------TTTCSEEECCSSSTTCSCS-SCEEEEEC-HHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCC
T ss_pred cc---c------ccCccEEEEcCcccccCCC-ceEEEEEC-HHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCC
Confidence 21 1 1255688999999998777 99999994 5555555321 1112 567
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc---eEEEEEecCCcccccChhhHHHHHHH
Q 046900 312 SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA---GLFCWMNLSPLLEEQTREGELALWDS 388 (442)
Q Consensus 312 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (442)
.+.|.++..+++.. .+.++++.++.++++++++.+.|++.|+++..+.+ +.++|+.++... +..++++.
T Consensus 275 ~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 346 (393)
T 1vjo_A 275 INLYYALREALRLI--AQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGV------DGKAVARR 346 (393)
T ss_dssp HHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTC------CHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHHHHHHcCCcccCCccccCCcEEEEEcCCCC------CHHHHHHH
Confidence 78888888887642 13346788899999999999999988888877654 346788876422 25678888
Q ss_pred HHHcCcEEEeCCCCCCCCCCCEEEEEe-e-cCCHHHHHHHHHHHHHHH
Q 046900 389 MLHEVKLNISPGSSCHCSEPGWFRVCF-A-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 389 l~~~~gi~v~pg~~f~~~~~~~iRls~-~-~~~~e~i~~~l~~l~~~l 434 (442)
|++++||.+.||+.|. .++++||++ + ..+++++++++++|++++
T Consensus 347 l~~~~gi~v~~g~~~~--~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 347 LLNEHNIEVGGGLGEL--AGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp HHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred HHhhCCEEEecCcccc--CCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 8776699999998764 367999994 3 326778999999999876
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=285.78 Aligned_cols=302 Identities=15% Similarity=0.152 Sum_probs=228.4
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc----CCCCeEEEcCCCCcChHHhH---hh
Q 046900 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA----DPGDALLVPTPYYPGFDRDL---RW 163 (442)
Q Consensus 91 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~---~~ 163 (442)
|....+..++|++++++++ +++++|++|+|+++++.+++.++. ++||.|+++.|+|+.+...+ .
T Consensus 40 ~~~~~~~~~l~~~la~~~g--------~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~- 110 (384)
T 1eg5_A 40 IEANLHMEKAREKVAKVLG--------VSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLS- 110 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------SCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHcC--------CCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHH-
Confidence 4445677899999999885 567899999999999999999997 79999999999999886655 5
Q ss_pred hcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcC--cEEEEecc
Q 046900 164 RTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKN--IHLVSDEI 241 (442)
Q Consensus 164 ~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~--~~vi~De~ 241 (442)
..|++++.+|+++ ++.+|++.|++.+++ ++++|++++|+||||.+++ +++|.++|++++ ++||+||+
T Consensus 111 ~~g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~Dea 179 (384)
T 1eg5_A 111 MKGFKVKYVPVDS--RGVVKLEELEKLVDE------DTFLVSIMAANNEVGTIQP---VEDVTRIVKKKNKETLVHVDAV 179 (384)
T ss_dssp HTTCEEEECCBCT--TSCBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEEECT
T ss_pred hcCCEEEEEccCC--CCccCHHHHHHHhCC------CCeEEEEECCCCCcccccC---HHHHHHHHHhcCCceEEEEEhh
Confidence 3799999999875 467899999998864 7899999999999999999 678888899999 99999999
Q ss_pred CCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHH-HHHHHHHc-----cccCCCcHHHH
Q 046900 242 YSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDK-VVTTARRM-----SSFTLISSQTQ 315 (442)
Q Consensus 242 y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~-~~~~~~~~-----~~~~~~s~~~q 315 (442)
|+ ++... .++. . .+..+++.|+||.+|++| +||++++++. +...+... ...+..+.+.|
T Consensus 180 ~~---~~~~~-~~~~----~-----~~~di~~~s~sK~~g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (384)
T 1eg5_A 180 QT---IGKIP-FSLE----K-----LEVDYASFSAHKFHGPKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGI 244 (384)
T ss_dssp TT---TTTSC-CCCT----T-----TCCSEEEEEGGGGTSCTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHH
T ss_pred hh---cCCcc-cCch----h-----cCCCEEEecHHHhcCCCc--eEEEEEcCCCccccccccCcccccccCCCCChHHH
Confidence 98 33221 1211 1 245688999999999878 7999996542 12221110 12356778888
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC---ceEEEEEecCCcccccChhhHHHHHHHHHHc
Q 046900 316 YLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN---AGLFCWMNLSPLLEEQTREGELALWDSMLHE 392 (442)
Q Consensus 316 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 392 (442)
.++.++++.. .+++++.++.++++++++.+.|++.|+++..+. .+.++++.++.. +..++.+.|.++
T Consensus 245 ~a~~~al~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~ 314 (384)
T 1eg5_A 245 VGAARAMEIA---VEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNI-------RGSTLQNLLSGY 314 (384)
T ss_dssp HHHHHHHHHH---HHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTC-------CHHHHHHHHHHT
T ss_pred HHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcccCCCCEEEEEeCCC-------CHHHHHHHHhhC
Confidence 8888777642 345778889999999999999988888876542 124666766532 256788887655
Q ss_pred CcEEEeCCCCCCCC-----------------CCCEEEEEeec-CCHHHHHHHHHHHHHHHHHHH
Q 046900 393 VKLNISPGSSCHCS-----------------EPGWFRVCFAN-MSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 393 ~gi~v~pg~~f~~~-----------------~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~~ 438 (442)
||.+.||..|+.. ..+++||+++. .+++++++++++|++++++.+
T Consensus 315 -gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 377 (384)
T 1eg5_A 315 -GIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLD 377 (384)
T ss_dssp -TEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred -CeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999877532 13789999982 389999999999999988654
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=279.93 Aligned_cols=335 Identities=10% Similarity=0.088 Sum_probs=242.1
Q ss_pred CCceeeeecccc-cc-cHHHHHHHHHhCCCCcccCCCCCCCCccccc--CCCcchHHHHHHHHHHHHHHhCCCCccCCCc
Q 046900 47 PSGVIQMGLAEN-QV-SFDLLEEYLEQQPEASTWGKGAPGFRENALF--QDYHGLKSFRQAMASFMEQIRGGRAKFDLNR 122 (442)
Q Consensus 47 ~~~~i~l~~~~n-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y--~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~ 122 (442)
+..+|||+.+++ .+ +++.+.+.+.+..... +.. .....| +...+..++|++++++++ ++ +.
T Consensus 38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~----~~~--~~~~~~~~g~~~~~~~l~~~la~~~g--------~~-~~ 102 (384)
T 1bs0_A 38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQF----GIG--SGGSGHVSGYSVVHQALEEELAEWLG--------YS-RA 102 (384)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHH----CSC--CCSBTTTTCCCHHHHHHHHHHHHHHT--------CS-EE
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHh----CCC--CCCcCcccCChHHHHHHHHHHHHHhC--------CC-cE
Confidence 456899999876 32 3344554444332110 000 001223 345678999999999984 32 55
Q ss_pred EEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCcee
Q 046900 123 IVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVR 202 (442)
Q Consensus 123 i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 202 (442)
|++++| ++++..++.+++++||.|+++.|+|+.+...++. .|++++.+|. .|++.|++.+++. ..+++
T Consensus 103 i~~~sG-t~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~-~g~~~~~~~~-------~d~~~l~~~l~~~---~~~~~ 170 (384)
T 1bs0_A 103 LLFISG-FAANQAVIAAMMAKEDRIAADRLSHASLLEAASL-SPSQLRRFAH-------NDVTHLARLLASP---CPGQQ 170 (384)
T ss_dssp EEESCH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHT-SSSEEEEECT-------TCHHHHHHHHHSC---CSSCE
T ss_pred EEeCCc-HHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHH-cCCCEEEeCC-------CCHHHHHHHHHhc---CCCCe
Confidence 666666 8999999999999999999999999999988885 8999999873 4789999988741 11367
Q ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCC
Q 046900 203 GVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGL 282 (442)
Q Consensus 203 ~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~ 282 (442)
++++++|+||||.+++ +++|+++|++||++||+||+|+.+.++.. ..++..... ....++++|+||.+|+
T Consensus 171 ~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~------~~~di~~~s~sK~~~~ 240 (384)
T 1bs0_A 171 MVVTEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQ-GRGSCWLQK------VKPELLVVTFGKGFGV 240 (384)
T ss_dssp EEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGG-GCCHHHHTT------CCCSEEEEESSSTTSS
T ss_pred EEEEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCC-CCchHHhcC------CCCcEEEeeccchhhc
Confidence 8899999999999999 77889999999999999999987655311 112222211 1233889999999997
Q ss_pred CCceeEEEeecCHHHHHHHHHcc-cc---CCCcHHHHHHHHHHhcCchhHHH-HHHHHHHHHHHHHHHHHHHHHhCCCee
Q 046900 283 PGFRVGTIYSYNDKVVTTARRMS-SF---TLISSQTQYLLASMLSNKKFTEN-YIKTNRERLQKRYQMIIEGLRSAGIEC 357 (442)
Q Consensus 283 ~G~RiG~i~~~~~~~~~~~~~~~-~~---~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~ 357 (442)
+| ||+++ ++.+.+.+.... .+ ...+++.+.++.+.++.. .+ +.++.+++++++++++.+.|++.|+++
T Consensus 241 ~G---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 313 (384)
T 1bs0_A 241 SG---AAVLC-SSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVI---RSDEGDARREKLAALITRFRAGVQDLPFTL 313 (384)
T ss_dssp CC---EEEEE-CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH---HSHHHHHHHHHHHHHHHHHHHHHTTSSCEE
T ss_pred cC---cEEEe-CHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 77 99999 566666655432 11 246778887777766532 21 456778889999999999999888887
Q ss_pred ecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC-CCCEEEEEeec-CCHHHHHHHHHHHHHH
Q 046900 358 LKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS-EPGWFRVCFAN-MSEQTLEVALKRIHNF 433 (442)
Q Consensus 358 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~-~~~~iRls~~~-~~~e~i~~~l~~l~~~ 433 (442)
.+ .++.++|+.++.. .+..++++.|+++ ||.+.||..|+.. ..+++||+++. .+++++++++++|+++
T Consensus 314 ~~-~~~~~~~~~~~~~------~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 314 AD-SCSAIQPLIVGDN------SRALQLAEKLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp CS-CCSSBCCEEEESH------HHHHHHHHHHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred cC-CCCCEEEEEeCCH------HHHHHHHHHHHHC-CcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 65 4455778887642 1367888888877 9999999877532 34789999983 3799999999999864
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=282.67 Aligned_cols=341 Identities=15% Similarity=0.164 Sum_probs=245.3
Q ss_pred CceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCC--CcchHHHHHHHHHHHHHHhCCCCcc-CCCcEE
Q 046900 48 SGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQD--YHGLKSFRQAMASFMEQIRGGRAKF-DLNRIV 124 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~-~~~~i~ 124 (442)
.++|+|+.+++..+++.+.+.+.+...... + ........|++ ..+..++|++++++++ . ++++|+
T Consensus 27 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~---~-~~~~~~~~y~~~~~~~~~~l~~~la~~~~--------~~~~~~v~ 94 (420)
T 1t3i_A 27 HPLVYLDNAATSQKPRAVLEKLMHYYENDN---A-NVHRGAHQLSVRATDAYEAVRNKVAKFIN--------ARSPREIV 94 (420)
T ss_dssp EECEECBTTTCCCCCHHHHHHHHHHHHHTC---C-CC--CCSHHHHHHHHHHHHHHHHHHHHTT--------CSCGGGEE
T ss_pred CceEEecCCccCCCCHHHHHHHHHHHHhcc---C-CCCcccchHHHHHHHHHHHHHHHHHHHcC--------CCCCCeEE
Confidence 457899998876544555444443221000 0 00001234654 4678899999999875 3 578999
Q ss_pred EecChHHHHHHHHHhh----cCCCCeEEEcCCCCcC----hHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHh
Q 046900 125 VTAGATAANELLTFIL----ADPGDALLVPTPYYPG----FDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAES 196 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l----~~~gd~Vl~~~p~y~~----~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~ 196 (442)
+|+|+++++.+++.++ +++||.|+++.|+|+. +...++ ..|++++.++++. ++.+|++.|++++++
T Consensus 95 ~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~--~~~~d~~~l~~~l~~--- 168 (420)
T 1t3i_A 95 YTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAA-KTGAVLKFVQLDE--QESFDLEHFKTLLSE--- 168 (420)
T ss_dssp EESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHH-HHCCEEEEECBCT--TSSBCHHHHHHHCCT---
T ss_pred EcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHH-hcCcEEEEeccCC--CCCcCHHHHHHhhCC---
Confidence 9999999999999999 8999999999999998 455556 3899999999874 567899999998864
Q ss_pred cCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecC
Q 046900 197 KDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSL 276 (442)
Q Consensus 197 ~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~ 276 (442)
++++|++++|+||||.+++ +++|.++|+++|++||+||+|+.... ..++..+ +..+++.|+
T Consensus 169 ---~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~----~~~~~~~---------~~di~~~s~ 229 (420)
T 1t3i_A 169 ---KTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHY----PLDVQLI---------DCDWLVASG 229 (420)
T ss_dssp ---TEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS----CCCHHHH---------TCSEEEEEG
T ss_pred ---CceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCc----cCchhhc---------CCCEEEEeh
Confidence 7899999999999999999 78889999999999999999985332 1233332 345889999
Q ss_pred cccCCCCCceeEEEeecCHHHHHHHHHcccc----------------------CCCcHHHHHHHHH-HhcCchhHHHHHH
Q 046900 277 SKDLGLPGFRVGTIYSYNDKVVTTARRMSSF----------------------TLISSQTQYLLAS-MLSNKKFTENYIK 333 (442)
Q Consensus 277 SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~----------------------~~~s~~~q~~~~~-~l~~~~~~~~~~~ 333 (442)
||.+|.+| +||+++ ++.+.+.++..... .+.+++.|.++.. .++... +.+++
T Consensus 230 sK~~~~~g--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~ 304 (420)
T 1t3i_A 230 HKMCAPTG--IGFLYG-KEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT--DLGME 304 (420)
T ss_dssp GGTTSCTT--CEEEEE-CHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH--HHCHH
T ss_pred hhhcCCCc--eEEEEE-chHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH--HhHHH
Confidence 99998777 899999 56666555433211 1244555655433 333111 12356
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCeeecCC------ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC-
Q 046900 334 TNRERLQKRYQMIIEGLRSA-GIECLKGN------AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC- 405 (442)
Q Consensus 334 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~- 405 (442)
+.+++++++++++.+.|++. |+++..+. ++++ ++.++.. +..++.+.|.+ +||.+.||..|..
T Consensus 305 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~l~~-~gi~v~~~~~~~~~ 375 (420)
T 1t3i_A 305 NIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALA-SFNVAGL-------HASDVATMVDQ-DGIAIRSGHHCTQP 375 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEE-EEEETTB-------CHHHHHHHHHT-TTEECBCSCTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEE-EEEECCC-------CHHHHHHHHHH-CCeEEeeccccchH
Confidence 77888999999999999987 88887664 5544 5567631 24567766654 5999999975521
Q ss_pred -----CCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHHHh
Q 046900 406 -----SEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 406 -----~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
..++++||+++. .+++++++++++|+++++.+++
T Consensus 376 ~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 376 LHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp HHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 115789999983 3899999999999999887543
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=277.31 Aligned_cols=341 Identities=14% Similarity=0.154 Sum_probs=243.1
Q ss_pred CceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCcc-CCCcEEEe
Q 046900 48 SGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKF-DLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~~~i~~t 126 (442)
.+++.|+.+.+..+++.+.+.+.+........ .........|....+..++|++++++++ . ++++|++|
T Consensus 22 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~la~~~~--------~~~~~~v~~~ 91 (406)
T 1kmj_A 22 LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAA--VHRGIHTLSAQATEKMENVRKRASLFIN--------ARSAEELVFV 91 (406)
T ss_dssp EECEECCTTTCCCCCHHHHHHHHHHHHHTCCC--CSSCSSHHHHHHHHHHHHHHHHHHHHTT--------CSCGGGEEEE
T ss_pred CceEEecCCccCCCCHHHHHHHHHHHHhhcCC--CCCCcchHHHHHHHHHHHHHHHHHHHcC--------CCCCCeEEEe
Confidence 35788888776544444444443321100000 0000001123345678899999999875 3 57899999
Q ss_pred cChHHHHHHHHHhh----cCCCCeEEEcCCCCcChH----HhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcC
Q 046900 127 AGATAANELLTFIL----ADPGDALLVPTPYYPGFD----RDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKD 198 (442)
Q Consensus 127 ~G~~~ai~~~~~~l----~~~gd~Vl~~~p~y~~~~----~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 198 (442)
+|+++++.+++.++ +++||.|+++.|+|++.. ..++ ..|++++.+++++ ++.+|++.|++.+.+
T Consensus 92 ~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~--~~~~d~~~l~~~l~~----- 163 (406)
T 1kmj_A 92 RGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCA-RVGAELRVIPLNP--DGTLQLETLPTLFDE----- 163 (406)
T ss_dssp SSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHH-HHTCEEEEECBCT--TSCBCGGGHHHHCCT-----
T ss_pred CChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHH-hCCCEEEEEecCC--CCCcCHHHHHHHhcc-----
Confidence 99999999999999 899999999999997643 3355 3799999999875 467899999998864
Q ss_pred CceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcc
Q 046900 199 MRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSK 278 (442)
Q Consensus 199 ~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK 278 (442)
++++|++++|+||||.+++ +++|+++|++||+++|+||+|+.... ..++... +..+++.|+||
T Consensus 164 -~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~----~~~~~~~---------~~d~~~~s~~K 226 (406)
T 1kmj_A 164 -KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH----PVDVQAL---------DCDFYVFSGHK 226 (406)
T ss_dssp -TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS----CCCHHHH---------TCSEEEEEGGG
T ss_pred -CCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCC----CCccccc---------CCCEEEEEchh
Confidence 7899999999999999999 88899999999999999999986321 2233222 45688999999
Q ss_pred cCCCCCceeEEEeecCHHHHHHHHHccc----------------------c-CCCcHHHHHHHH-HHhcCchhHHHHHHH
Q 046900 279 DLGLPGFRVGTIYSYNDKVVTTARRMSS----------------------F-TLISSQTQYLLA-SMLSNKKFTENYIKT 334 (442)
Q Consensus 279 ~~g~~G~RiG~i~~~~~~~~~~~~~~~~----------------------~-~~~s~~~q~~~~-~~l~~~~~~~~~~~~ 334 (442)
.+|.+| +||+++ ++.+.+.++.... + .+.+.+.|.++. +.++... ..++++
T Consensus 227 ~~g~~G--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~ 301 (406)
T 1kmj_A 227 LYGPTG--IGILYV-KEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVS--ALGLNN 301 (406)
T ss_dssp TTSCTT--CEEEEE-CHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH--HHCHHH
T ss_pred ccCCCC--cEEEEE-eHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHH--HcCHHH
Confidence 998888 899999 5666655443221 0 123455555443 3443211 124567
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCeeecC--CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC------
Q 046900 335 NRERLQKRYQMIIEGLRSA-GIECLKG--NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC------ 405 (442)
Q Consensus 335 ~~~~~~~~~~~l~~~L~~~-g~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~------ 405 (442)
.+++++++++++.+.|++. |+++..+ .++++.| .++.. +..++.+.|.++ ||.+.||..|..
T Consensus 302 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~ 372 (406)
T 1kmj_A 302 IAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAF-NLGKH-------HAYDVGSFLDNY-GIAVRTGHHCAMPLMAYY 372 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEE-EETTC-------CHHHHHHHHHHT-TEECEEECTTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEE-EECCC-------CHHHHHHHHhhC-CcEEEeccccchHHHHhc
Confidence 7888899999999999987 8888877 7776655 56531 255677777555 999999986531
Q ss_pred CCCCEEEEEeecC-CHHHHHHHHHHHHHHHHHH
Q 046900 406 SEPGWFRVCFANM-SEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 406 ~~~~~iRls~~~~-~~e~i~~~l~~l~~~l~~~ 437 (442)
..++++||+++.. ++++++++++.|+++++.+
T Consensus 373 g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 373 NVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp TCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 1257999999843 8999999999999988754
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=276.20 Aligned_cols=306 Identities=12% Similarity=0.069 Sum_probs=227.1
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCc
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGI 167 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~ 167 (442)
.|+...+..++|+++|++++ . +++|++|+|++ ++..++.++. .+||.|+++.|+|+.+...++. .|+
T Consensus 86 ~~~~~~~~~~l~~~la~~~~--------~-~~~i~~~sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~-~g~ 154 (401)
T 2bwn_A 86 ISGTTAYHRRLEAEIAGLHQ--------K-EAALVFSSAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKR-NAG 154 (401)
T ss_dssp TBCCBHHHHHHHHHHHHHTT--------C-SEEEEESCHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHH-SCC
T ss_pred ccCChHHHHHHHHHHHHHhC--------C-CcEEEECCcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHH-cCC
Confidence 46666788999999999975 2 57888888877 7776666653 5899999999999999988884 899
Q ss_pred EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCC
Q 046900 168 KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAF 247 (442)
Q Consensus 168 ~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~ 247 (442)
+++.++.+ |++.+++.+++.. ..++++|++++|+||||.+++ +++|+++|++||+++|+||+|+...+
T Consensus 155 ~~~~v~~~-------d~~~le~~l~~~~--~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~ 222 (401)
T 2bwn_A 155 PKRIFRHN-------DVAHLRELIAADD--PAAPKLIAFESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMY 222 (401)
T ss_dssp CEEEECTT-------CHHHHHHHHHHSC--TTSCEEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTS
T ss_pred eEEEEcCC-------CHHHHHHHHHhhc--cCCceEEEEecCcCCCCCcCC---HHHHHHHHHHcCCEEEEecccccccc
Confidence 99999863 6889999887421 126889999999999999999 78889999999999999999996555
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc---c-CCCcHHHHHHHHHHhc
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS---F-TLISSQTQYLLASMLS 323 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~---~-~~~s~~~q~~~~~~l~ 323 (442)
+.. ...+..... . ..+.+++++||||++|++| ||+++ ++.+.+.+..... + ...+++.+.++.+.++
T Consensus 223 ~~~-g~~~~~~~~-~---~~~~~i~~~s~sK~~~~~G---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~ 293 (401)
T 2bwn_A 223 GPR-GAGVAERDG-L---MHRIDIFNGTLAKAYGVFG---GYIAA-SARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIA 293 (401)
T ss_dssp STT-SCCHHHHHT-C---GGGCSEEEEESSSTTCSCC---EEEEE-CHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHH
T ss_pred CCC-CceeeeccC-c---cccCcEEEeechhhccCCC---CEEec-CHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHH
Confidence 322 122322111 0 0134688999999999888 99998 5666665553221 1 2234566766666654
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCC
Q 046900 324 NKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSC 403 (442)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f 403 (442)
.... ..+++.+++++++++++.+.|++.|+++..+.++ ++|+.++... +..++++.|++++||.+.|+..|
T Consensus 294 ~~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~~------~~~~~~~~L~~~~gi~v~~~~~~ 364 (401)
T 2bwn_A 294 FLKT--AEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSH-IVPVVIGDPV------HTKAVSDMLLSDYGVYVQPINFP 364 (401)
T ss_dssp HHTS--HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSS-CEEEECCCHH------HHHHHHHHHHHHHCEECCEECTT
T ss_pred HHHh--cccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCC-eEEEEeCChH------HHHHHHHHHHhcCCEEEeecCCC
Confidence 2211 1246677888999999999998878888777776 7888887521 35678888874449999999877
Q ss_pred CCC-CCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 404 HCS-EPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 404 ~~~-~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
+.. +.+++|++++ ..+++++++++++|++++++
T Consensus 365 ~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 365 TVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp TSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred CCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence 543 3368999998 23899999999999998765
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=271.91 Aligned_cols=303 Identities=11% Similarity=0.088 Sum_probs=227.6
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCC-------------CCeEEEcCCCCcChHHhHh
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADP-------------GDALLVPTPYYPGFDRDLR 162 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~-------------gd~Vl~~~p~y~~~~~~~~ 162 (442)
+..++++++++++.+.++ +++++|++|+|+++++..++.++..+ ||.|+++.|+|+.+...++
T Consensus 66 ~~~~~~~~l~~~la~~~~----~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~ 141 (397)
T 3f9t_A 66 GTKLLEEKAVALLGSLLN----NKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGRE 141 (397)
T ss_dssp HHHHHHHHHHHHHHHHTT----CTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhC----CCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHH
Confidence 667888888888887765 67889999999999999999998776 9999999999999999998
Q ss_pred hhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccC
Q 046900 163 WRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIY 242 (442)
Q Consensus 163 ~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y 242 (442)
. .|++++.+|+++ ++.+|++.|++.+++. +++++++++|+||||.+.+ +++|+++|++||++||+||+|
T Consensus 142 ~-~g~~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~ 210 (397)
T 3f9t_A 142 M-MDLEYIYAPIKE--DYTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTIDN---IEELSKIAKENNIYIHVDAAF 210 (397)
T ss_dssp H-HTCEEEEECBCT--TSSBCHHHHHHHHHHS-----CCCEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTT
T ss_pred H-cCceeEEEeeCC--CCcCCHHHHHHHHhhc-----CCeEEEEECCCCCCCCCCC---HHHHHHHHHHhCCeEEEEccc
Confidence 5 899999999875 4679999999999752 6789999999999999988 778899999999999999999
Q ss_pred CcCCCCCCCc-ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccC-------------
Q 046900 243 SGSAFSSSEF-VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT------------- 308 (442)
Q Consensus 243 ~~~~~~~~~~-~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~------------- 308 (442)
+.+.++.... .++..+........ +..+++.|+||.++ +|.|+||++++++.+.+.+.....+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (397)
T 3f9t_A 211 GGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGH-CPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRV 288 (397)
T ss_dssp GGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTC-CCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCC
T ss_pred cchhhhhcccccccccccccccccc-cCCeEEEccccccC-CCCCceEEEEeCHHHHHhhccCCccccCCCccccccccc
Confidence 8754421110 00000000000001 33477899999875 78899999997766554443222221
Q ss_pred CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHH
Q 046900 309 LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDS 388 (442)
Q Consensus 309 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (442)
..+...+.++...+. ...+++..++++++++++.+.|++.|+++..+..+.++|+.++. ..++.+.
T Consensus 289 ~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~ 354 (397)
T 3f9t_A 289 GFGGACTYAVLRYLG-----REGQRKIVNECMENTLYLYKKLKENNFKPVIEPILNIVAIEDED---------YKEVCKK 354 (397)
T ss_dssp SHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEEEEECTT---------HHHHHHH
T ss_pred cchHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCCccEEEEEeCC---------HHHHHHH
Confidence 113455555555553 23356677778899999999999888886555555577887764 4678888
Q ss_pred HHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHH
Q 046900 389 MLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 389 l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~ 435 (442)
|.++ ||.+.+|.. ++++||+++ ..+++++++++++|+++++
T Consensus 355 l~~~-gi~v~~~~~-----~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 355 LRDR-GIYVSVCNC-----VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp HHHT-TCBCEECSS-----SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred HHhC-CeEEeccCC-----CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 8777 999999753 579999998 3389999999999998864
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-34 Score=277.62 Aligned_cols=338 Identities=14% Similarity=0.138 Sum_probs=236.9
Q ss_pred Cceeeeecccccc-cHHHHHHHHHhCCCCccc-CCCCCCCCcccccCCCcchHHHHHH-HHHHHHHHhCCCCccCCCcEE
Q 046900 48 SGVIQMGLAENQV-SFDLLEEYLEQQPEASTW-GKGAPGFRENALFQDYHGLKSFRQA-MASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 48 ~~~i~l~~~~n~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Y~~~~g~~~lr~~-ia~~l~~~~~~~~~~~~~~i~ 124 (442)
+++|.|+.+.+.. +++.+.+.+.+....... ..+ . .....|.+..+..++|++ ++++++ .+ +|+
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~~la~~~~--------~~--~v~ 73 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFC--T-TGRLDEIKTPPIHDFIHNQLPKFLG--------CD--VAR 73 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC-----------------------CCHHHHHHTHHHHHTT--------SS--EEE
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCcc--c-cccchhhHHHHHHHHHHHHHHHHcC--------CC--EEE
Confidence 3567777744322 335555555554321100 000 0 001234455788999999 999975 23 999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEe--cCCCCCCcCCHHHHHHHHHHHHhcCCcee
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIH--CDSSNNFQITPQALEAAYKEAESKDMRVR 202 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~--~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 202 (442)
+|+|+++++..++.+++++||.|+++.|+|+.+...++. .|++++.++ .++ ++.+|++.|++.+++.... .+++
T Consensus 74 ~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~--~~~~d~~~l~~~l~~~~~~-~~~~ 149 (371)
T 2e7j_A 74 VTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAER-AGLNIALVPKTDYP--DYAITPENFAQTIEETKKR-GEVV 149 (371)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHH-TTCEEEEECCCCTT--TCCCCHHHHHHHHHHHTTT-SCEE
T ss_pred EeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHH-cCCeEEEeecccCC--CCCcCHHHHHHHHHhhccc-CCeE
Confidence 999999999999999999999999999999999988884 899999999 654 4679999999999853211 3789
Q ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCC
Q 046900 203 GVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGL 282 (442)
Q Consensus 203 ~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~ 282 (442)
++++++|+||||.+++ +++|+++|++||++||+||+|+.+.+. .++..+ +..++++|+||.++
T Consensus 150 ~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~----~~~~~~---------~~di~~~s~sK~~~- 212 (371)
T 2e7j_A 150 LALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP----VSLKEI---------GADFIVGSGHKSMA- 212 (371)
T ss_dssp EEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC----CCHHHH---------TCSEEEEEHHHHSS-
T ss_pred EEEEECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCCC----CChhhc---------CCCEEEecCCcCCC-
Confidence 9999999999999999 588889999999999999999974431 233333 23388999999997
Q ss_pred CCceeEEEeecCHHHHHH-HHHccc---------cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHH--HHHHHHHHHHH
Q 046900 283 PGFRVGTIYSYNDKVVTT-ARRMSS---------FTLISSQTQYLLASMLSNKKFTENYIKTNRERL--QKRYQMIIEGL 350 (442)
Q Consensus 283 ~G~RiG~i~~~~~~~~~~-~~~~~~---------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~l~~~L 350 (442)
+|.|+||++++++ +.+. ++.... .+..+...+.++...++ +..+ +..+++ +++++++.+.|
T Consensus 213 ~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~---~~~~~~~~~~~~~~l~~~L 285 (371)
T 2e7j_A 213 ASGPIGVMGMKEE-WAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFP---HVRE---RIKRWDEEVEKARRFAAEM 285 (371)
T ss_dssp CCSSCEEEEECTT-TTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHH---HHHH---HGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEech-hhhhhccccccCcccccccccCCcCHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4569999999654 4343 333222 23334444444444443 2121 455666 78888999999
Q ss_pred HhCCCeeecCC--ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC----CCCCEEE-EEeec--CCHH
Q 046900 351 RSAGIECLKGN--AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC----SEPGWFR-VCFAN--MSEQ 421 (442)
Q Consensus 351 ~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~----~~~~~iR-ls~~~--~~~e 421 (442)
++.|+++..+. .+.++|++++ +..++.+.|.++ ||.+.| ..|.. ..++++| ++++. .+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~-gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~ 354 (371)
T 2e7j_A 286 EKLGIKQLGDNPHNHDLMFFHAE---------VLYEISKKAKGG-RFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDE 354 (371)
T ss_dssp HHTTCEEESSSSCCSSEEEEECH---------HHHHHHHHSSSG-GGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHH
T ss_pred HHcCcEEecCCCccCceEEEECC---------CHHHHHHHHHHC-CEEEEe-ccccccccCCCCCceEEEEeeccCCCHH
Confidence 88888887663 3458899875 156788888755 999988 43322 1257899 99984 4899
Q ss_pred HHHHHHHHHHHHHHHH
Q 046900 422 TLEVALKRIHNFMQKR 437 (442)
Q Consensus 422 ~i~~~l~~l~~~l~~~ 437 (442)
++++++++|+++++++
T Consensus 355 ~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 355 EVDYVLNAFKEIIEKY 370 (371)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998753
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=273.72 Aligned_cols=298 Identities=14% Similarity=0.145 Sum_probs=229.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCC-cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH--HhHhhhcCcEEEEEe
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLN-RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD--RDLRWRTGIKIVPIH 173 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~-~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~--~~~~~~~G~~v~~v~ 173 (442)
..++|++++++++ .+++ +|++|+|+++++..++.+++++||.|+++.|+|+.+. ..++ ..|++++.++
T Consensus 53 ~~~l~~~la~~~~--------~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~~~v~ 123 (396)
T 2ch1_A 53 MDEVKDGLRYIFQ--------TENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSE-RYGADVRTIE 123 (396)
T ss_dssp HHHHHHHHHHHHT--------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHH-HcCCceEEec
Confidence 7889999999986 4566 8999999999999999999999999999999999984 3566 4899999999
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
++. ++.+|+++|++.+++. ++++|++++|+||||.+++ +++|+++|+++|++||+||+|+. +..+ .
T Consensus 124 ~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~Dea~~~---g~~~-~ 189 (396)
T 2ch1_A 124 GPP--DRPFSLETLARAIELH-----QPKCLFLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVASL---CGVP-F 189 (396)
T ss_dssp CCT--TSCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTB---TTBC-C
T ss_pred CCC--CCCCCHHHHHHHHHhC-----CCCEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEEccccc---cCCc-c
Confidence 875 4679999999999753 5789999999999999999 77888999999999999999983 2221 1
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc-------------------------cccC
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM-------------------------SSFT 308 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~-------------------------~~~~ 308 (442)
++.. .+..+++.|++|.++ ++.++||++++ +.+.+.+... ...+
T Consensus 190 ~~~~---------~~~d~~~~s~~K~~~-~~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (396)
T 2ch1_A 190 YMDK---------WEIDAVYTGAQKVLG-APPGITPISIS-PKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHH 258 (396)
T ss_dssp CTTT---------TTCCEEECCCC-CCC-CCSSCEEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCC
T ss_pred chhh---------cCcCEEEEcCCcccc-CCCCeEEEEEC-HHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCC
Confidence 2111 122366789999875 44557999994 5555554321 0113
Q ss_pred CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCce----EEEEEecCCcccccChhhHHH
Q 046900 309 LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAG----LFCWMNLSPLLEEQTREGELA 384 (442)
Q Consensus 309 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~ 384 (442)
..+...|.++.++++.. .++++++.+++++++++++.+.|++.|+++..+.++ .++|+.++... +..+
T Consensus 259 ~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 330 (396)
T 2ch1_A 259 TVASNLIFALREALAQI--AEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGV------DWWK 330 (396)
T ss_dssp CCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTC------CHHH
T ss_pred CCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCCC------CHHH
Confidence 45667787777777632 134567788899999999999998888888776653 47888886422 2668
Q ss_pred HHHHHHHcCcEEEeCCCCCCCCCCCEEEEEe-e-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 385 LWDSMLHEVKLNISPGSSCHCSEPGWFRVCF-A-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 385 l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~-~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
+++.|++++||.+.+|..+. .++++||++ + ..+++++++++++|++++++.+
T Consensus 331 ~~~~L~~~~gi~v~~g~~~~--~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 331 VSQYAMNNFSLEVQGGLGPT--FGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp HHHHHHHHHCBCCBCCCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCEEEecCcccc--CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 88888876699999987543 357999999 4 3478999999999999998764
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=280.83 Aligned_cols=297 Identities=18% Similarity=0.228 Sum_probs=222.3
Q ss_pred ccCC-CcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHh----Hhh
Q 046900 90 LFQD-YHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRD----LRW 163 (442)
Q Consensus 90 ~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~----~~~ 163 (442)
.|++ ..+..++|++++++++ +++++|++|+|+++++..++.++ +++||.|+++.|+|+.+... ++
T Consensus 53 ~y~~~~~~~~~l~~~la~~~g--------~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~- 123 (390)
T 1elu_A 53 ANQHIQQLIAQLRQALAETFN--------VDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAA- 123 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--------SCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHcC--------CCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHH-
Confidence 4554 3578899999999874 56789999999999999999999 89999999999999987654 34
Q ss_pred hcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHH----hcCcEEEEe
Q 046900 164 RTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFAT----RKNIHLVSD 239 (442)
Q Consensus 164 ~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~----~~~~~vi~D 239 (442)
..|++++.++++.+.++.+|++.|++.+++ ++++|++++|+||||.+++ +++|.++|+ ++|+++|+|
T Consensus 124 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~D 194 (390)
T 1elu_A 124 RFGITYRFFPVAATLNQGDAAAVLANHLGP------KTRLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVD 194 (390)
T ss_dssp HHCCEEEEECCGGGSSSSCHHHHHHTTCCT------TEEEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEE
T ss_pred HhCcEEEEEcCCCCCCccchHHHHHHhcCC------CceEEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEE
Confidence 379999999986434677999999988764 7899999999999999999 788888998 999999999
Q ss_pred ccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc---------------
Q 046900 240 EIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM--------------- 304 (442)
Q Consensus 240 e~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~--------------- 304 (442)
|+|+... ....+ . ..+..+++.|+||.++ +|.++||+++++ .+.+.+...
T Consensus 195 ea~~~g~----~~~~~---~------~~~~d~~~~s~~K~~~-~~~g~G~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~ 259 (390)
T 1elu_A 195 GAQSAGS----LPLDF---S------RLEVDYYAFTGHKWFA-GPAGVGGLYIHG-DCLGEINPTYVGWRSITYGAKGEP 259 (390)
T ss_dssp CTTTBTT----BCCCT---T------TSCCSEEEEESSSTTC-CCTTCEEEEECT-TTGGGCCCCSCCTTTEEECTTSCE
T ss_pred cccccCC----cCCCh---h------hcCCCEEEcccccccc-CCCceEEEEECH-HhHhhcCCccccCCcccccccCcc
Confidence 9998421 11111 1 1245688999999543 567799999954 444333221
Q ss_pred ---------cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec---CCceEEEEEecC
Q 046900 305 ---------SSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK---GNAGLFCWMNLS 371 (442)
Q Consensus 305 ---------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~---~~~g~~~~~~~~ 371 (442)
...+..+.+.+.++...++.... ..++++.+++++++++++.+.|++. |+++.. +.++++.| +++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~-~~~ 337 (390)
T 1elu_A 260 TGWAEGGKRFEVATSAYPQYAGLLAALQLHQR-QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSF-TVD 337 (390)
T ss_dssp EEECSGGGGGCCSCCCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEE-EEC
T ss_pred cccccchHhhCCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEE-EcC
Confidence 11234555666666555542110 1136778888999999999999987 888774 45775555 776
Q ss_pred CcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHH
Q 046900 372 PLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNF 433 (442)
Q Consensus 372 ~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~ 433 (442)
... +..++.+.|.++ ||.+.+|. .++++||+++ ..+++++++++++|+++
T Consensus 338 ~~~------~~~~~~~~l~~~-gi~v~~~~-----~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 338 SPL------GHRAIVQKLEEQ-RIYLRTIA-----DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp SSS------CHHHHHHHHHHT-TEECEEET-----TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred CCC------CHHHHHHHHHHC-CEEEEecC-----CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 322 256788888665 99999975 3578999985 34899999999998753
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=269.53 Aligned_cols=299 Identities=14% Similarity=0.071 Sum_probs=224.5
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH--HhHhhhcCcEEEEE
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD--RDLRWRTGIKIVPI 172 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~--~~~~~~~G~~v~~v 172 (442)
.+..++|++++++++ +++++|++|+|+++++.+++.+++++||.|+++.|+|+.+. ..++ ..|++++.+
T Consensus 42 ~~~~~l~~~la~~~g--------~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~g~~~~~v 112 (392)
T 2z9v_A 42 LLYEKVVDKAQKAMR--------LSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKGFGYWAK-RYSPHLLEI 112 (392)
T ss_dssp HHHHHHHHHHHHHTT--------CSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHH-HHCSCEEEE
T ss_pred HHHHHHHHHHHHHhC--------CCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHH-HcCCceEEe
Confidence 356788888888864 46789999999999999999999999999999999998752 3344 379999999
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+++++ +.+|++.|++.+++ ..++++|++++|+||||.+++ +++|.++|+++|++||+||+|+. +.. .
T Consensus 113 ~~~~~--~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~---g~~-~ 179 (392)
T 2z9v_A 113 EVPYN--EAIDPQAVADMLKA----HPEITVVSVCHHDTPSGTINP---IDAIGALVSAHGAYLIVDAVSSF---GGM-K 179 (392)
T ss_dssp ECCTT--SCCCHHHHHHHHHH----CTTCCEEEEESEEGGGTEECC---HHHHHHHHHHTTCEEEEECTTTB---TTB-S
T ss_pred eCCCC--CCCCHHHHHHHHhc----CCCCcEEEEeccCCCCceecc---HHHHHHHHHHcCCeEEEEccccc---CCc-c
Confidence 98753 36899999999964 236889999999999999998 67888999999999999999983 221 1
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccC-CCCCceeEEEeecCHHHHHHHHHc----------------------cccCC
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDL-GLPGFRVGTIYSYNDKVVTTARRM----------------------SSFTL 309 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~G~RiG~i~~~~~~~~~~~~~~----------------------~~~~~ 309 (442)
.++.. .+..+++.|+||.+ |.+| +||+++ ++.+.+.++.. ...+.
T Consensus 180 ~~~~~---------~~~d~~~~s~sK~~~~~~g--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 247 (392)
T 2z9v_A 180 THPED---------CKADIYVTGPNKCLGAPPG--LTMMGV-SERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFT 247 (392)
T ss_dssp CCGGG---------GTCSEEEECSSSTTCCCSC--CEEEEE-CHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSC
T ss_pred ccccc---------ccceEEEecCcccccCCCc--eeEEEE-CHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCC
Confidence 12211 13457889999965 4455 599999 45555555421 11233
Q ss_pred CcHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHHHHHHHHHHhCCCeeec-CC---ceEEEEEecCCcccccChhhHHH
Q 046900 310 ISSQTQYLLASMLSNKKFTENY-IKTNRERLQKRYQMIIEGLRSAGIECLK-GN---AGLFCWMNLSPLLEEQTREGELA 384 (442)
Q Consensus 310 ~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~---~g~~~~~~~~~~~~~~~~~~~~~ 384 (442)
.+...+.++.+.++ +..++ +++.+++++++++++.+.|++.|+++.. +. .+.++|+.++... +..+
T Consensus 248 ~~~~~~~a~~~al~---~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 318 (392)
T 2z9v_A 248 PSVSEINGLDVALD---LYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGV------DEKA 318 (392)
T ss_dssp CCHHHHHHHHHHHH---HHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTC------CHHH
T ss_pred CCHHHHHHHHHHHH---HHHhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCCccccCCceEEEECCCCC------CHHH
Confidence 44555555555554 22333 6678888999999999999888887766 32 4667888886422 2567
Q ss_pred HHHHHHHcCcEEEeCCCCCCCCCCCEEEEEe-e-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 385 LWDSMLHEVKLNISPGSSCHCSEPGWFRVCF-A-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 385 l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~-~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
+.+.|.+++||.+.+|..+. .++++||++ + ..+++++++++++|++++++++
T Consensus 319 l~~~L~~~~gi~v~~g~~~~--~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 319 LRQAARARYGVVFSSGRGET--LGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp HHHHHHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCEEEecCCCCC--CCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 88888776699999988653 357999994 5 4589999999999999988654
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-33 Score=267.86 Aligned_cols=336 Identities=14% Similarity=0.118 Sum_probs=240.1
Q ss_pred CceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEec
Q 046900 48 SGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA 127 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~ 127 (442)
+++|+|+.+.+..+++.+.+.+.+.. ..|....|..++++++++++.+.+| +++++|++|+
T Consensus 13 p~~i~l~~~~~~~~~~~v~~a~~~~~---------------~~~~~~~g~~~~~~~~~~~l~~~~g----~~~~~v~~~~ 73 (359)
T 1svv_A 13 PKPYSFVNDYSVGMHPKILDLMARDN---------------MTQHAGYGQDSHCAKAARLIGELLE----RPDADVHFIS 73 (359)
T ss_dssp --CEECSCSCSSCCCHHHHHHHHHHT---------------TCCCCSTTCSHHHHHHHHHHHHHHT----CTTSEEEEES
T ss_pred CeeEEecCCCcCCCCHHHHHHHHHHH---------------hhccccccccHHHHHHHHHHHHHhC----CCCccEEEeC
Confidence 35789998777665666666666543 1355566778999999999998876 5688999999
Q ss_pred ChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh--HhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHH-hcCCceeEE
Q 046900 128 GATAANELLTFILADPGDALLVPTPYYPGFDRD--LRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAE-SKDMRVRGV 204 (442)
Q Consensus 128 G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~--~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~~v 204 (442)
|+++++..++.+++++||.|++++|+|+.+... ++ ..|++++.+|.+ ++.+|++.|++.+++.. ..+.++++|
T Consensus 74 g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v 149 (359)
T 1svv_A 74 GGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIE-ATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLV 149 (359)
T ss_dssp CHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHH-HTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEE
T ss_pred CchHHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHh-cCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEE
Confidence 999999999999999999999999999988773 66 489999999975 46799999999998620 112248999
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC-cccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE-FVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~-~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
++++| ||||.+++.+++++|+++|++||+++|+||+|..+.++..+ ......+... ..+++.|++|..+
T Consensus 150 ~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-------~d~~~~s~~K~g~-- 219 (359)
T 1svv_A 150 YISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARL-------TDMFYIGATKAGG-- 219 (359)
T ss_dssp EEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHH-------CSEEEEECTTTTC--
T ss_pred EEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhc-------CCEEEEecccCCC--
Confidence 99999 79999999999999999999999999999999543222111 1122111111 1256789999744
Q ss_pred CceeEEEeecCHHHHHHHHHc---ccc-CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 046900 284 GFRVGTIYSYNDKVVTTARRM---SSF-TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK 359 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~---~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 359 (442)
...+|+++++ +.+.+.++.. ... ...+......+.+++.... .++.+++++++++++.+.|+..|+++..
T Consensus 220 ~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 293 (359)
T 1svv_A 220 MFGEALIILN-DALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNL-----FFELGAHSNKMAAILKAGLEACGIRLAW 293 (359)
T ss_dssp SSCEEEEECS-GGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTH-----HHHHHHHHHHHHHHHHHHHHHTTCCBSS
T ss_pred CCceEEEEEc-ccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHhccCCeEEcc
Confidence 3567999984 4444333322 111 1122222333345565532 3567788889999999999555888887
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
+.+++|+|++++ .++++.|++++||.+.+.. ...++++||+++ ..+++++++++++|++++++
T Consensus 294 ~~~~~~~~~~~~-----------~~~~~~l~~~~gi~v~~~~---~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 294 PSASNQLFPILE-----------NTMIAELNNDFDMYTVEPL---KDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp CCSSSEECBEEE-----------HHHHHHHTTTEECEEEEEE---TTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred CCccceEEEEcC-----------HHHHHHHHHhcCEEEEecc---cCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 888889998764 2677777666699983210 123578999876 23899999999999998765
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=273.24 Aligned_cols=348 Identities=15% Similarity=0.123 Sum_probs=245.2
Q ss_pred CCCceeeeecccc-cc-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcE
Q 046900 46 NPSGVIQMGLAEN-QV-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRI 123 (442)
Q Consensus 46 ~~~~~i~l~~~~n-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i 123 (442)
.+..+|||+.+.+ .+ +++.+.+.+.+....... +.. .....++......+|++.++++++ . ++.
T Consensus 62 ~g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~--~~~--~~~~~~G~~~~~~~l~~~la~~~g--------~--~~~ 127 (427)
T 2w8t_A 62 RGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGS--GTC--GSRMLNGTFHDHMEVEQALRDFYG--------T--TGA 127 (427)
T ss_dssp TTEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCS--CCC--SCTTTTCCCHHHHHHHHHHHHHHT--------C--SEE
T ss_pred CCceEEEEECcccccCCCCHHHHHHHHHHHHHhCC--CCc--ccccccCCcHHHHHHHHHHHHHhC--------C--Cce
Confidence 3567899999864 22 334444444332211000 000 001112223345778888887764 2 255
Q ss_pred EEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 124 VVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 124 ~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
++++++++++..++.+++++||.|+++.|+|..+...++. .|++++.++. .|++.|++.+++.. ..++++
T Consensus 128 i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~-~g~~~~~~~~-------~d~~~le~~l~~~~--~~~~~~ 197 (427)
T 2w8t_A 128 IVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQ-GNAEIVRFRH-------NSVEDLDKRLGRLP--KEPAKL 197 (427)
T ss_dssp EEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHH-SCSEEEEECT-------TCHHHHHHHHHTSC--SSSCEE
T ss_pred EEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHH-cCCeeEEeCC-------CCHHHHHHHHHhcc--CCCCeE
Confidence 5666667799999999999999999999999999999885 8999998873 58999999987521 126789
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
|++++|+||||.+++ +++|+++|++||+++|+||+|+.+.++.. ..++..... . ..+.+++++||||.+|++
T Consensus 198 v~~~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~-g~~~~~~~~---~-~~~~di~~~s~sK~~g~~ 269 (427)
T 2w8t_A 198 VVLEGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPN-GRGVYEAQG---L-EGQIDFVVGTFSKSVGTV 269 (427)
T ss_dssp EEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT-SCCHHHHTT---C-TTCCSEEEEESSSTTCSC
T ss_pred EEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC-CCchHhhcC---C-CcCCcEEEecchhhhccC
Confidence 999999999999998 88899999999999999999998877532 233333211 0 124578899999999877
Q ss_pred CceeEEEeecCHHHHHHHHHcc----ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeee-
Q 046900 284 GFRVGTIYSYNDKVVTTARRMS----SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECL- 358 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~- 358 (442)
| ||++++ +.+.+.+.... ..+..+++.+.++.+.++... ++++.++.++++++++.+.|++.|+++.
T Consensus 270 g---G~v~~~-~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 341 (427)
T 2w8t_A 270 G---GFVVSN-HPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM----TAHEKRERLWSNARALHGGLKAMGFRLGT 341 (427)
T ss_dssp C---EEEEEC-CTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHHHTCEESC
T ss_pred C---CEEEeC-HHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 7 999995 45555444321 113456666665556665322 1356788889999999999988888887
Q ss_pred cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC-CCCEEEEEeec-CCHHHHHHHHHHHHHHHHH
Q 046900 359 KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS-EPGWFRVCFAN-MSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 359 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~-~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~ 436 (442)
++..+.++|+.++.. ....++++.|+++ ||.+.||..|+.. +.+++||+++. .+++++++++++|++++++
T Consensus 342 ~~~~~~~~~~~~~~~------~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~ 414 (427)
T 2w8t_A 342 ETCDSAIVAVMLEDQ------EQAAMMWQALLDG-GLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRA 414 (427)
T ss_dssp SSCCSSEEEEEESSH------HHHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCH------HHHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 441455889988652 1367888898887 9999999877543 34689999983 4899999999999999987
Q ss_pred HHhh
Q 046900 437 RERR 440 (442)
Q Consensus 437 ~~~~ 440 (442)
..+.
T Consensus 415 ~~~~ 418 (427)
T 2w8t_A 415 VGVI 418 (427)
T ss_dssp HTCC
T ss_pred hCcc
Confidence 6543
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=267.89 Aligned_cols=331 Identities=13% Similarity=0.158 Sum_probs=227.4
Q ss_pred CCceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 47 PSGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
|-.+|+|+.+++++|.+.+.+.+.+... ....|.+..+..+||+++|++++ .++++++
T Consensus 2 ~~~~i~~~~~~~~~p~~~~~~a~~~~~~------------~~~~y~~~~~~~~l~~~la~~~g----------~~~~~~~ 59 (347)
T 1jg8_A 2 PHMMIDLRSDTVTKPTEEMRKAMAQAEV------------GDDVYGEDPTINELERLAAETFG----------KEAALFV 59 (347)
T ss_dssp ---CEECSCGGGCCCCHHHHHHHHTCCC------------CCGGGTCCHHHHHHHHHHHHHHT----------CSEEEEE
T ss_pred CceEEEeccccCCCCCHHHHHHHhcCCC------------CCcccCCChHHHHHHHHHHHHhC----------CceEEEe
Confidence 3467899999999887777777765421 11357666788999999999985 2467888
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH---hHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDR---DLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~---~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
+|+++++.+++.+++++||+|+++.|+|..... .+. ..|++++.+ .++ ++.+|+++|++++++......++++
T Consensus 60 ~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~-~~g~~~~~v-~~~--~~~~d~~~l~~~i~~~~~~~~~~~~ 135 (347)
T 1jg8_A 60 PSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAV-LSGVMPHPV-PGK--NGAMDPDDVRKAIRPRNIHFPRTSL 135 (347)
T ss_dssp SCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHH-HTCCEEEEE-CEE--TTEECHHHHHHHSCCSCTTSCCEEE
T ss_pred cCcHHHHHHHHHHhcCCCCEEEEcCcchhhhccccchhh-ccCeEEEEe-cCC--CCccCHHHHHHHhccccccccCceE
Confidence 888999999999999999999999999865332 345 389999888 432 4568999999887521000126899
Q ss_pred EEEeCCCCCC-CcCCCHHHHHHHHHHHHhcCcEEEEeccCCcC--CCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccC
Q 046900 204 VLITNPSNPL-GATIQRSVLEELLDFATRKNIHLVSDEIYSGS--AFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDL 280 (442)
Q Consensus 204 v~l~~P~NPt-G~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~--~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~ 280 (442)
|++++|+||| |.+++.+++++|+++|+++|++||+|++|... .+.+. +...+... .+. ++.|+||.+
T Consensus 136 v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~~-----~d~--~~~s~sK~l 205 (347)
T 1jg8_A 136 IAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV---PVKEYAGY-----ADS--VMFCLSKGL 205 (347)
T ss_dssp EEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC---CHHHHHHT-----CSE--EEEESSSTT
T ss_pred EEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC---ChHHhccc-----ccE--EEEeccccc
Confidence 9999999999 99999999999999999999999999987521 11121 33333322 243 345899999
Q ss_pred CCCCceeEE-EeecCHHHHHHHHHcccc----CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 046900 281 GLPGFRVGT-IYSYNDKVVTTARRMSSF----TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGI 355 (442)
Q Consensus 281 g~~G~RiG~-i~~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 355 (442)
+.+ +|| +++ ++.+.+.+...... ...+.+.+.++...++.. .+.+++ ..++++.+.+.|++.|+
T Consensus 206 ~~~---~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~-~~~~~~~l~~~L~~~~~ 274 (347)
T 1jg8_A 206 CAP---VGSVVVG-DRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKM------VDRLKE-DHENARFLALKLKEIGY 274 (347)
T ss_dssp CCS---SCEEEEE-CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHS------STTHHH-HHHHHHHHHHHHHHHTC
T ss_pred CCC---ceEEEEc-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHHhcCc
Confidence 743 575 555 56665554433222 122334444444444321 111122 23456777888877676
Q ss_pred eee-cCCceEEEEEecCC-cccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHH
Q 046900 356 ECL-KGNAGLFCWMNLSP-LLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHN 432 (442)
Q Consensus 356 ~~~-~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~ 432 (442)
++. .+..+.|+|++++. .. +..++++.|.++ ||.+.++. .+++|+++. ..+++++++++++|++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~-gi~v~~~~------~~~iRl~~~~~~~~e~i~~~~~~l~~ 341 (347)
T 1jg8_A 275 SVNPEDVKTNMVILRTDNLKV------NAHGFIEALRNS-GVLANAVS------DTEIRLVTHKDVSRNDIEEALNIFEK 341 (347)
T ss_dssp BCCGGGCCSSEEEEECTTSSS------CHHHHHHHHHHH-TEECEEEE------TTEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eeccCCCcceEEEEEcccccC------CHHHHHHHHHHC-CCEEecCC------CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 652 23445579999874 11 256888888776 99999852 468999985 4489999999999999
Q ss_pred HHHHH
Q 046900 433 FMQKR 437 (442)
Q Consensus 433 ~l~~~ 437 (442)
++++.
T Consensus 342 ~l~~~ 346 (347)
T 1jg8_A 342 LFRKF 346 (347)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98754
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=269.30 Aligned_cols=298 Identities=15% Similarity=0.144 Sum_probs=224.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc----CCCCeEEEcCCCCcChHHhHhh--hcCcEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA----DPGDALLVPTPYYPGFDRDLRW--RTGIKI 169 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~~~--~~G~~v 169 (442)
...++|+.++++++ +++++|++|+|+++++.+++.++. ++||.|++++|+|+.+...+.. ..|+++
T Consensus 44 ~~~~l~~~la~~~g--------~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~ 115 (382)
T 4eb5_A 44 AVQEAREKVAKLVN--------GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEV 115 (382)
T ss_dssp HHHHHHHHHHHHHT--------CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEE
T ss_pred HHHHHHHHHHHHhC--------CCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEE
Confidence 45677777777764 467899999999999999999998 8999999999999988766542 269999
Q ss_pred EEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC
Q 046900 170 VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS 249 (442)
Q Consensus 170 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~ 249 (442)
+.+++++ ++.+|++.|++.+++ ++++|++++|+||||.+++ +++|+++|+++|++ |+||+|+. +.
T Consensus 116 ~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~~---g~ 180 (382)
T 4eb5_A 116 EYIPVGK--YGEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQP---VEEISEVLAGKAAL-HIDATASV---GQ 180 (382)
T ss_dssp EEECBCT--TSCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSEE-EEECTTTB---TT
T ss_pred EEeccCC--CCccCHHHHHHHhcC------CCeEEEEeccCCCccccCC---HHHHHHHHHHCCCE-EEEcchhc---CC
Confidence 9999875 457899999998864 7889999999999999999 67889999999999 99999983 22
Q ss_pred CCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHH-HHHHHH-----HccccCCCcHHHHHHHHHHhc
Q 046900 250 SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDK-VVTTAR-----RMSSFTLISSQTQYLLASMLS 323 (442)
Q Consensus 250 ~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~-~~~~~~-----~~~~~~~~s~~~q~~~~~~l~ 323 (442)
...++..+ +..+++.|+||.+|.+| +||++++++. +...+. .....+..+...+.++...++
T Consensus 181 -~~~~~~~~---------~~di~~~s~sK~~g~~g--~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 248 (382)
T 4eb5_A 181 -IEVDVEKI---------GADMLTISSNDIYGPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAE 248 (382)
T ss_dssp -BCCCHHHH---------TCSEEEEETGGGTCCSS--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH
T ss_pred -cccCcccc---------CCCEEEeehHHhcCCCc--eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHH
Confidence 22233322 34578899999988666 6999886552 211110 011123445555555555554
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCc---eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeC
Q 046900 324 NKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNA---GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISP 399 (442)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~p 399 (442)
+..+++++.+++++++++++.+.|++. |+++..+.+ +.++|+.++.. +..++.+.|.++ ||.+.+
T Consensus 249 ---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~-gi~v~~ 317 (382)
T 4eb5_A 249 ---ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI-------EGESIVLSLDMA-GIQAST 317 (382)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTS-------CHHHHHHHHHHH-TCBCBC
T ss_pred ---HHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCc-------CHHHHHHHHHHC-CEEEec
Confidence 223456778889999999999999887 777766542 34677777631 256788888766 999999
Q ss_pred CCCCCCC-----------------CCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 400 GSSCHCS-----------------EPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 400 g~~f~~~-----------------~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
|..|... .++++||+++ ..+++++++++++|++++++.++
T Consensus 318 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 318 GSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp CCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9865431 2479999998 23899999999999999988775
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=268.81 Aligned_cols=287 Identities=17% Similarity=0.182 Sum_probs=211.7
Q ss_pred cccCCCcchH---HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH----hH
Q 046900 89 ALFQDYHGLK---SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR----DL 161 (442)
Q Consensus 89 ~~Y~~~~g~~---~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~ 161 (442)
..|+. .|.+ +|+++++++++ .+++++++|+++++..++.+++++||.|+++.|+|+.+.. .+
T Consensus 54 ~~Y~~-~~~~~~~~l~~~ia~~~g----------~~~~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~ 122 (404)
T 1e5e_A 54 YIYTR-LGNPTVSNLEGKIAFLEK----------TEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHAL 122 (404)
T ss_dssp CCBTT-TCCHHHHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHH
T ss_pred ccccC-CcChHHHHHHHHHHHHhC----------CCcEEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHH
Confidence 45766 4545 89999999875 2378888888999999999999999999999999999887 56
Q ss_pred hhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHh-cCcEEEEec
Q 046900 162 RWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATR-KNIHLVSDE 240 (442)
Q Consensus 162 ~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~-~~~~vi~De 240 (442)
+. .|++++.++++ |++.|++.+++ ++++|++++|+||||.+++ +++|+++|++ +|+++|+||
T Consensus 123 ~~-~g~~~~~v~~~-------d~~~l~~~i~~------~t~~v~l~~p~NptG~v~~---l~~i~~la~~~~~~~li~De 185 (404)
T 1e5e_A 123 TK-FGIQVDFINTA-------IPGEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADN 185 (404)
T ss_dssp HH-TTCEEEEECTT-------STTHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEEC
T ss_pred HH-cCCEEEEECCC-------CHHHHHHhcCC------CCcEEEEECCCCCCCcccC---HHHHHHHHHhhcCCEEEEEC
Confidence 64 89999999864 67889888764 7899999999999999997 8899999999 999999999
Q ss_pred cCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee-EEEeecCHHHHHHHHHccccC---CCcHHHHH
Q 046900 241 IYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV-GTIYSYNDKVVTTARRMSSFT---LISSQTQY 316 (442)
Q Consensus 241 ~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri-G~i~~~~~~~~~~~~~~~~~~---~~s~~~q~ 316 (442)
+|+.+.+.. ++ . .++++++.|+||.|+.+|+|+ ||++++++.+.+.++.....+ .++++.|.
T Consensus 186 ~~~~~~~~~----~~-~---------~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 251 (404)
T 1e5e_A 186 TFCSPMITN----PV-D---------FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAW 251 (404)
T ss_dssp TTTCTTTCC----GG-G---------GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHH
T ss_pred CCchhhhCC----cc-c---------cCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999876531 11 1 156789999999999999998 999995444442666554433 46788888
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC---------------CCeeecCC----ceEEEEEecCCccccc
Q 046900 317 LLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA---------------GIECLKGN----AGLFCWMNLSPLLEEQ 377 (442)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------------g~~~~~~~----~g~~~~~~~~~~~~~~ 377 (442)
++...++... ...+...++.+.+.+.|++. |+++..++ ++++.| +++.
T Consensus 252 ~~~~~l~~~~-------~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~----- 318 (404)
T 1e5e_A 252 LITRGLSTLN-------IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKS----- 318 (404)
T ss_dssp HHHHHHTTHH-------HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETT-----
T ss_pred HHHHhHhHHH-------HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCC-----
Confidence 8888887532 12223334444555555543 22222232 787777 7764
Q ss_pred ChhhHHHHHHHHHHcCcEEEeCCCCCCC-----------------------CC--CCEEEEEeecCCHHHHHHHHHHHHH
Q 046900 378 TREGELALWDSMLHEVKLNISPGSSCHC-----------------------SE--PGWFRVCFANMSEQTLEVALKRIHN 432 (442)
Q Consensus 378 ~~~~~~~l~~~l~~~~gi~v~pg~~f~~-----------------------~~--~~~iRls~~~~~~e~i~~~l~~l~~ 432 (442)
..+....++++.|| +.+|..|+. .+ ++++|||++. |++++++++|++
T Consensus 319 ----~~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~---e~~~~li~~l~~ 390 (404)
T 1e5e_A 319 ----GFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI---EDADELIADFKQ 390 (404)
T ss_dssp ----HHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHH
T ss_pred ----CHHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHH
Confidence 12234456677799 666666652 12 5899999986 678889999988
Q ss_pred HHHHHH
Q 046900 433 FMQKRE 438 (442)
Q Consensus 433 ~l~~~~ 438 (442)
++....
T Consensus 391 al~~~~ 396 (404)
T 1e5e_A 391 GLDALL 396 (404)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887543
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=266.89 Aligned_cols=300 Identities=15% Similarity=0.134 Sum_probs=226.7
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCC-cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH--HhHhhhcCcEEEE
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLN-RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD--RDLRWRTGIKIVP 171 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~--~~~~~~~G~~v~~ 171 (442)
.+..++|+.++++++ ++++ +|++|+|+++++.+++.+++++||.|+++.|+|+.+. ..++ ..|++++.
T Consensus 52 ~~~~~l~~~la~~~g--------~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~~~ 122 (393)
T 2huf_A 52 KIMDDIKEGVRYLFQ--------TNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMAT-RYGADVRV 122 (393)
T ss_dssp HHHHHHHHHHHHHHT--------CCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-HTTCEEEE
T ss_pred HHHHHHHHHHHHHhC--------CCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHHHHHHHH-HcCCeeEE
Confidence 456788888888775 4565 8999999999999999999999999999999998742 3344 37999999
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
+++++ ++.+|++.|++.+++. ++++|++++|+||||.+++ +++|+++|+++|+++|+||+++. +..
T Consensus 123 v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~~---~~~- 188 (393)
T 2huf_A 123 VKSKV--GQSLSLDEIRDALLIH-----KPSVLFLTQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVASL---GGA- 188 (393)
T ss_dssp EECCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTB---TTB-
T ss_pred EeCCC--CCCCCHHHHHHHHhcc-----CCcEEEEEccCCCccccCC---HHHHHHHHHHcCCEEEEEccccc---CCC-
Confidence 99875 3568999999999752 5789999999999999999 77889999999999999999863 221
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCccc-CCCCCceeEEEeecCHHHHHHHHHcc----c--------------------
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKD-LGLPGFRVGTIYSYNDKVVTTARRMS----S-------------------- 306 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~-~g~~G~RiG~i~~~~~~~~~~~~~~~----~-------------------- 306 (442)
...+. . .+..+++.|+||. +|++|+ ||+++ ++.+.+.++... .
T Consensus 189 ~~~~~---~------~~~d~~~~s~sK~l~g~~G~--G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (393)
T 2huf_A 189 PMFMD---R------WEIDAMYTGSQKVLGAPPGI--TPVSF-SHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRI 256 (393)
T ss_dssp CCCTT---T------TTCSEEECCSSSTTCCCSSC--EEEEE-CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCC
T ss_pred Ccchh---h------cCccEEEECCCcccccCCCe--EEEEE-CHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCC
Confidence 11111 1 2456888999997 556776 99999 466666665431 1
Q ss_pred -cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC---ceEEEEEecCCcccccChhhH
Q 046900 307 -FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN---AGLFCWMNLSPLLEEQTREGE 382 (442)
Q Consensus 307 -~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~ 382 (442)
.+..+...+.++.++++... +..+++.+++++++++++.+.|++.|+++..+. +++++|+.++... +.
T Consensus 257 ~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~ 328 (393)
T 2huf_A 257 YHHTISSTLLYGLREAIAMAC--EEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGV------DW 328 (393)
T ss_dssp CSCCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTC------CH
T ss_pred CCCCCCHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCCC------CH
Confidence 02334555555555554211 123667788899999999999998888877653 3558888886422 25
Q ss_pred HHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEe-e-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 383 LALWDSMLHEVKLNISPGSSCHCSEPGWFRVCF-A-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 383 ~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~-~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
.++++.|++++||.+.+|..|. .++++||++ + ..+++++++++++|++++++.+.
T Consensus 329 ~~~~~~L~~~~gi~v~~g~~~~--~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~ 385 (393)
T 2huf_A 329 LKAAQYAMKTYLVEISGGLGPT--AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKP 385 (393)
T ss_dssp HHHHHHHHHHHCEECBCCCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCEEEecCcccc--cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 6788888776699999998763 357999999 5 23688899999999999987654
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=269.07 Aligned_cols=295 Identities=13% Similarity=0.120 Sum_probs=216.8
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEec
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHC 174 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~ 174 (442)
....++++.++++++ .+..++++++++++..++.+++++||.|+++.|+|+.+...+.. .|++++.++.
T Consensus 104 ~~~~~l~~~la~~~g----------~~~~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~-~g~~~~~~~~ 172 (409)
T 3kki_A 104 YDKPMIEKRLAKFTG----------FDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARY-ANAQAHPFMH 172 (409)
T ss_dssp TTSCHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHH-TTCEEEEECT
T ss_pred HHHHHHHHHHHHHhC----------CCeEEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHH-cCCeEEEecC
Confidence 345677777777764 22344555557999999999999999999999999999998885 8999988864
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s 254 (442)
.|+++|++.+++. ++++|++++|+||||.+++ +++|+++|++||++||+||+|+.+.++... ..
T Consensus 173 -------~d~~~le~~l~~~-----~~~~vi~~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~g-~~ 236 (409)
T 3kki_A 173 -------NNCDHLRMLIQRH-----GPGIIVVDSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPNG-AG 236 (409)
T ss_dssp -------TCHHHHHHHHHHH-----CSCEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGG-CC
T ss_pred -------CCHHHHHHHHHhc-----CCeEEEECCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCC-Cc
Confidence 5899999999863 4689999999999999999 888999999999999999999986553221 12
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc----cCCCcHHHHHHHHHHhcCchhHHH
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS----FTLISSQTQYLLASMLSNKKFTEN 330 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~----~~~~s~~~q~~~~~~l~~~~~~~~ 330 (442)
......- ..+..+++.|+||++|.+ .||++++++ +.+.+..... ....+++.+.++.+.++. .++
T Consensus 237 ~~~~~~~----~~~~di~~~s~sK~~~~~---gg~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~---~~~ 305 (409)
T 3kki_A 237 LLAELGL----TREVHFMTASLAKTFAYR---AGAIWCNNE-VNRCVPFISYPAIFSSTLLPYEAAGLETTLEI---IES 305 (409)
T ss_dssp HHHHHTC----GGGCSEEEEESSSTTCSS---CEEEEESSS-GGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHH---HHH
T ss_pred chhhcCC----CCCCCEEEeecchhhCCC---ceEEEECHH-HHHHHHHhCcCccccCCCcHHHHHHHHHHHHH---Hhc
Confidence 2222110 013458899999999855 499999544 4444333211 123455555555555542 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCC-CCCCC
Q 046900 331 YIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCH-CSEPG 409 (442)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~-~~~~~ 409 (442)
.++.++.++++++++.+.|++.|+++. ..++++|+.++... +..++++.|+++ ||.+.|+..+. ..+.+
T Consensus 306 -~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~------~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~ 375 (409)
T 3kki_A 306 -ADNRRQHLDRMARKLRIGLSQLGLTIR--SESQIIGLETGDER------NTEKVRDYLESN-GVFGSVFCRPATSKNKN 375 (409)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTTTCCCC--CSSSEEEEEEESHH------HHHHHHHHHHHT-TEECEEECTTSSCTTCE
T ss_pred -CHHHHHHHHHHHHHHHHHHHHcCCccC--CCCCEEEEEeCCHH------HHHHHHHHHHHC-CceEeeeCCCCcCCCCc
Confidence 256788899999999999999888765 35668888876531 356788888888 99998865432 23457
Q ss_pred EEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 410 WFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 410 ~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
++||+++ ..+++++++++++|+++++..
T Consensus 376 ~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 404 (409)
T 3kki_A 376 IIRLSLNSDVNDEQIAKIIEVCSDAVNYG 404 (409)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEccCCCCHHHHHHHHHHHHHHHhcC
Confidence 9999997 338999999999999998753
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=266.74 Aligned_cols=293 Identities=13% Similarity=0.055 Sum_probs=221.1
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH--HhHhhhcCcEEEEE
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD--RDLRWRTGIKIVPI 172 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~--~~~~~~~G~~v~~v 172 (442)
.+..++|++++++++ +++++|++|+|+++++..++.+++++||.|+++.|+|+.+. ..+. ..|++++.+
T Consensus 34 ~~~~~l~~~la~~~g--------~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~~~v 104 (352)
T 1iug_A 34 EVFLKARGLLREAFR--------TEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIAL-EAGLVVERL 104 (352)
T ss_dssp HHHHHHHHHHHHHHT--------CSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH-HTTCEEEEE
T ss_pred HHHHHHHHHHHHHhC--------CCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHHHHHHHH-HcCCceEEE
Confidence 456888899988875 45789999999999999999999999999999999998865 3344 379999999
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhc--CcEEEEeccCCcCCCCCC
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK--NIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~--~~~vi~De~y~~~~~~~~ 250 (442)
+++.+ +.+|+++|++ + ++++|++++|+||||.+++ +++|.++|+++ |++||+||+|+. +..
T Consensus 105 ~~~~~--~~~d~~~l~~---~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~---~~~ 167 (352)
T 1iug_A 105 DYPYG--DTPRPEDVAK---E------GYAGLLLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTSL---LVG 167 (352)
T ss_dssp ECCTT--CCCCTTTSCC---S------SCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTTB---TTB
T ss_pred eCCCC--CCCCHHHHhc---c------CCcEEEEEEecCCcceecC---HHHHHHHHHhhCCCCEEEEECCccc---cCc
Confidence 98753 4578888776 2 7889999999999999999 67888999999 999999999973 221
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHH-------------HH---HccccCCCcHHH
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT-------------AR---RMSSFTLISSQT 314 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~-------------~~---~~~~~~~~s~~~ 314 (442)
+ ..+.. .+..+++.|+||.++ .+.++||+++++ .+.+. .. .....+..+...
T Consensus 168 ~-~~~~~---------~~~d~~~~s~~K~~~-~~~g~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (352)
T 1iug_A 168 E-VALEA---------MGVDAAASGSQKGLM-CPPGLGFVALSP-RALERLKPRGYYLDLARELKAQKEGESAWTPAINL 235 (352)
T ss_dssp C-CCSGG---------GTCSEEEEESSSTTC-CCSCEEEEEECH-HHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHH
T ss_pred c-eeccc---------cCeeEEEecCccccc-CCCceeEEEECH-HHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHH
Confidence 1 11111 134577899999543 223479999954 43322 11 112235556677
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC-ceEEEEEecCCcccccChhhHHHHHHHHHHcC
Q 046900 315 QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN-AGLFCWMNLSPLLEEQTREGELALWDSMLHEV 393 (442)
Q Consensus 315 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 393 (442)
+.++.++++.. .+++++.+++++++++++.+.|++.|+++..+. .++++|++++... +..++++.|.++
T Consensus 236 ~~a~~~al~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~- 305 (352)
T 1iug_A 236 VLAVAAVLEEV---LPRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGV------PYARVKEAFAQR- 305 (352)
T ss_dssp HHHHHHHHHHH---GGGHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTC------CHHHHHHHHHTT-
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCCC------CHHHHHHHHHHC-
Confidence 77666666531 223667888899999999999998888887764 6678999987422 256788888776
Q ss_pred cEEEeCCCCCCCCCCCEEEEEeecC-CHHHHHHHHHHHHHHHHHH
Q 046900 394 KLNISPGSSCHCSEPGWFRVCFANM-SEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 394 gi~v~pg~~f~~~~~~~iRls~~~~-~~e~i~~~l~~l~~~l~~~ 437 (442)
||.+.||..+ ..++++||+++.. +++++++++++|++++++.
T Consensus 306 gi~v~~~~~~--~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 306 GAVIAGGQGP--LKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp TEECEECCGG--GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCc--cCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 9999998743 2457999999832 6899999999999998765
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=267.82 Aligned_cols=298 Identities=15% Similarity=0.139 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc----CCCCeEEEcCCCCcChHHhHhh--hcCcEEEE
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA----DPGDALLVPTPYYPGFDRDLRW--RTGIKIVP 171 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~~~--~~G~~v~~ 171 (442)
.++.+.+.+++.+.++ +++++|++|+|+++++.+++.++. ++||.|+++.|+|+.+...+.. ..|++++.
T Consensus 42 ~~~~~~~~~~la~~~~----~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~ 117 (382)
T 4hvk_A 42 REAVQEAREKVAKLVN----GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEY 117 (382)
T ss_dssp HHHHHHHHHHHHHHTT----CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHcC----CCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEE
Confidence 4444444454444444 567899999999999999999998 8999999999999988775542 25999999
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
+++++ ++.+|+++|++.+++ +++++++++|+||||.+++ +++|+++|++||+ ||+|++|+... .
T Consensus 118 v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~-li~D~a~~~~~----~ 181 (382)
T 4hvk_A 118 IPVGK--YGEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQP---VEEISEVLAGKAA-LHIDATASVGQ----I 181 (382)
T ss_dssp ECBCT--TSCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHSSSSE-EEEECTTTBTT----B
T ss_pred eccCC--CCCcCHHHHHHHhcc------CceEEEEECCCCCceeeCC---HHHHHHHHHHcCE-EEEEhHHhcCC----C
Confidence 99875 457899999998864 7899999999999999999 6788899999999 99999987422 1
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc---------cccCCCcHHHHHHHHHHh
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM---------SSFTLISSQTQYLLASML 322 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~---------~~~~~~s~~~q~~~~~~l 322 (442)
..+.... +..+++.|+||.+|.+| +|+++++++. .+... ...+..+...+.++.+.+
T Consensus 182 ~~~~~~~---------~~d~~~~s~~K~~g~~g--~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 247 (382)
T 4hvk_A 182 EVDVEKI---------GADMLTISSNDIYGPKG--VGALWIRKEA---KLQPVILGGGQENGLRSGSENVPSIVGFGKAA 247 (382)
T ss_dssp CCCHHHH---------TCSEEEEESGGGTSCTT--CEEEEEETTC---CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHH
T ss_pred CCCchhc---------CCCEEEEeHHHhcCCCc--eEEEEEcCcc---CcCcccccCCCcCccccCCcCHHHHHHHHHHH
Confidence 2233222 34588999999887666 6777764432 11111 112334556666665555
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCc---eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe
Q 046900 323 SNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNA---GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS 398 (442)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~ 398 (442)
. +..+++++.++.++++++++.+.|++. |+++..+.+ +.++++.++.. +..++.+.|.++ ||.+.
T Consensus 248 ~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~-gi~v~ 316 (382)
T 4hvk_A 248 E---ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI-------EGESIVLSLDMA-GIQAS 316 (382)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTC-------CHHHHHHHHHHT-TCBCB
T ss_pred H---HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCC-------CHHHHHHHHHHC-CEEEe
Confidence 4 334567888999999999999999986 777766543 23566666532 256778887666 99999
Q ss_pred CCCCCCCCC-----------------CCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 399 PGSSCHCSE-----------------PGWFRVCFA-NMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 399 pg~~f~~~~-----------------~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
+|..|.... ++++||+++ ..+++++++++++|++++++.++.
T Consensus 317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~~ 376 (382)
T 4hvk_A 317 TGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSM 376 (382)
T ss_dssp CC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred eCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 998776432 578999998 337899999999999999887653
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=265.84 Aligned_cols=298 Identities=14% Similarity=0.163 Sum_probs=224.8
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcC-CCCcC-hHHhHhhhcCcEEEEE
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPT-PYYPG-FDRDLRWRTGIKIVPI 172 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~-p~y~~-~~~~~~~~~G~~v~~v 172 (442)
.+..++|++++++++ .+.++++|++|+|+++++.+++.+++++||.|++.+ ++|+. +...+. ..|++++.+
T Consensus 37 ~~~~~l~~~la~~~g------~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~-~~g~~~~~v 109 (366)
T 1m32_A 37 GVVEQIRQQLTALAT------ASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAG-LMGIAHHAY 109 (366)
T ss_dssp TTHHHHHHHHHHHHC------SSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHH-HHTCCEEEE
T ss_pred HHHHHHHHHHHHHhC------CCCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHH-HhCCceEEE
Confidence 578999999999985 112356899999999999999999999999988776 55654 555666 489999999
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+++. .+.+|++.|++.+++. .++++|++++|+||||.+++ +++|+++|++||+++|+||+|+.... .
T Consensus 110 ~~~~--~~~~d~~~l~~~l~~~----~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~----~ 176 (366)
T 1m32_A 110 DCGE--VARPDVQAIDAILNAD----PTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGI----P 176 (366)
T ss_dssp ECCT--TSCCCHHHHHHHHHHC----TTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTS----C
T ss_pred eCCC--CCCCCHHHHHHHHhcC----CCeEEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEECCccccCc----C
Confidence 9865 4568999999999751 24788999999999999999 77889999999999999999985322 1
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc------------------c--cCCCcH
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS------------------S--FTLISS 312 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~------------------~--~~~~s~ 312 (442)
.++. . .+..+++.|+||.++ .+.++||++++ +.+.+.+.... . .+..+.
T Consensus 177 ~~~~---~------~~~di~~~s~~K~~~-~~~g~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (366)
T 1m32_A 177 MDIA---A------LHIDYLISSANKCIQ-GVPGFAFVIAR-EQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPT 245 (366)
T ss_dssp CCTT---T------TTCSEEEEESSSTTC-CCSSEEEEEEE-HHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCH
T ss_pred cccc---c------cCccEEEecCccccc-CCCceEEEEEC-HHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCH
Confidence 1111 1 235588999999874 33457999995 44443332210 0 134566
Q ss_pred HHHHHHHHHhcCchhHHHH--HHHHHHHHHHHHHHHHHHHHhCCCeeecC---CceEEEEEecCC--cccccChhhHHHH
Q 046900 313 QTQYLLASMLSNKKFTENY--IKTNRERLQKRYQMIIEGLRSAGIECLKG---NAGLFCWMNLSP--LLEEQTREGELAL 385 (442)
Q Consensus 313 ~~q~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~g~~~~~~~~~--~~~~~~~~~~~~l 385 (442)
+.+.++.+.++. ..++ +++.+++++++++++.+.|++.|+++..+ .+++++|+.++. .. +..++
T Consensus 246 ~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 316 (366)
T 1m32_A 246 HTVLAFAQALKE---LAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQY------RFSEF 316 (366)
T ss_dssp HHHHHHHHHHHH---HHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTC------CHHHH
T ss_pred HHHHHHHHHHHH---HHHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCchhcCceEEEEEcCccCCC------CHHHH
Confidence 666666666653 2333 56788889999999999999888877654 467799999874 21 25678
Q ss_pred HHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecC-CHHHHHHHHHHHHHHHHH
Q 046900 386 WDSMLHEVKLNISPGSSCHCSEPGWFRVCFANM-SEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 386 ~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~-~~e~i~~~l~~l~~~l~~ 436 (442)
.+.|.++ ||.+.||..| .++++|++++.. +++++++++++|++++++
T Consensus 317 ~~~l~~~-gi~v~~~~~~---~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 317 YRRLKEQ-GFVIYPGKVS---QSDCFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp HHHHHHT-TEECEECCCS---SSCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHC-CEEEECCcCC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 8888777 9999999877 357899999842 789999999999988653
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-32 Score=262.73 Aligned_cols=295 Identities=16% Similarity=0.194 Sum_probs=223.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCC--CcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcC--hHHhHhhhcCcEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDL--NRIVVTAGATAANELLTFILADPGDALLVPTPYYPG--FDRDLRWRTGIKIVP 171 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~--~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~--~~~~~~~~~G~~v~~ 171 (442)
...++++.++++++ +++ ++|++|+|+++++. ++.+++++||.|+++.|+|.. +...+. ..|++++.
T Consensus 36 ~~~~~~~~la~~~~--------~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~~~~~~~~-~~g~~~~~ 105 (384)
T 3zrp_A 36 ALAYSLKGLRYVMG--------ASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGDRWEQIFK-RYPVNVKV 105 (384)
T ss_dssp HHHHHHHHHHHHHT--------CCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHHHHHHHHT-TSSCEEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchHHHHHHHH-HcCCcEEE
Confidence 44566666666654 445 88999999999999 999999999999999999965 555556 48999999
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
++++. ++.+|++.|++.+++. ++++|++++|+||||.+++ +++|.++|++||+++|+|++|+....
T Consensus 106 v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~---- 171 (384)
T 3zrp_A 106 LRPSP--GDYVKPGEVEEEVRKS-----EYKLVALTHVETSTGVREP---VKDVINKIRKYVELIVVDGVSSVGAE---- 171 (384)
T ss_dssp ECCST--TCCCCHHHHHHHHHHS-----CEEEEEEESEETTTTEECC---HHHHHHHHGGGEEEEEEECTTTTTTS----
T ss_pred ecCCC--CCCCCHHHHHHHHHhC-----CCcEEEEeCCCCCCceECc---HHHHHHHHHhcCCEEEEECcccccCc----
Confidence 99876 3568999999999862 6899999999999999999 77889999999999999999984322
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHH-------------HH-----------cccc
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTA-------------RR-----------MSSF 307 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~-------------~~-----------~~~~ 307 (442)
..++. ..+..+++.|+||.++ .+.++||++++ +.+.+.+ .. ....
T Consensus 172 ~~~~~---------~~~~d~~~~s~~K~~~-~~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (384)
T 3zrp_A 172 EVKAE---------EWNVDVYLTASQKALG-SAAGLGLLLLS-PKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAY 240 (384)
T ss_dssp CCCTT---------TTTCSEEEEETTSTTC-CCSSEEEEEEC-HHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCC
T ss_pred ccccc---------ccCCCEEEecCccccc-CCCceEEEEEC-HHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCc
Confidence 11111 1245688999999885 34558999994 4444433 11 1111
Q ss_pred -CCCcHHHHHHHHHHhcCchhHHH-HHHHHHHHHHHHHHHHHHHHHhCCCeeecCC----ceEEEEEecCCcccccChhh
Q 046900 308 -TLISSQTQYLLASMLSNKKFTEN-YIKTNRERLQKRYQMIIEGLRSAGIECLKGN----AGLFCWMNLSPLLEEQTREG 381 (442)
Q Consensus 308 -~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~ 381 (442)
+..+...+.++.+.+.. ..+ .+++.+++++++++++.+.|++.|+++..+. +++++|+.++. . +
T Consensus 241 ~g~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~------~ 310 (384)
T 3zrp_A 241 FATPPVHVILQLAEAFRL---IEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKV-A------D 310 (384)
T ss_dssp SSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSS-S------C
T ss_pred CCCCCHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCC-C------C
Confidence 24455555555555542 222 3678888999999999999998888887766 56788888876 2 2
Q ss_pred HHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 382 ELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 382 ~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
..++.+.|.++ ||.+.+|..+.. +++||++. ..+++++++++++|++++++.+.
T Consensus 311 ~~~~~~~l~~~-gi~v~~g~~~~~---~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 365 (384)
T 3zrp_A 311 PQKVLAGTVNE-GVEFAPGVHPAF---KYFRIGHMGWVTPNDAIIAISVIERTLRKLGE 365 (384)
T ss_dssp HHHHHHHHHTT-TCCCEECCCTTC---CEEEEECCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHC-CEEEecCCCCCc---CEEEEeccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 67888888777 999999875432 89999987 33899999999999999988654
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=273.78 Aligned_cols=350 Identities=11% Similarity=0.093 Sum_probs=232.7
Q ss_pred CCCceeeeecccc--cc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 46 NPSGVIQMGLAEN--QV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 46 ~~~~~i~l~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
....+|||+.+.+ ++ +++.+.+.+.+...... .....|.+..+..+||++|++++. + . .++
T Consensus 39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~--------~~~~~~~~~~~~~~l~~~la~~~~-----~-~-~~~ 103 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS--------HTCFQVLAYEPYLELCEIMNQKVP-----G-D-FAK 103 (426)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCS--------CCCTTTEECHHHHHHHHHHHHHSS-----C-S-SCE
T ss_pred CCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCC--------CccccccCCHHHHHHHHHHHHhCC-----c-c-ccc
Confidence 3456889988765 33 34555555554432110 011235556788999999999973 1 1 358
Q ss_pred cEEEecChHHHHHHHHH---hhcCCCCeEEEcCCCCcChHH-hHhhhcCcE-------------EEEEecCC---CCCCc
Q 046900 122 RIVVTAGATAANELLTF---ILADPGDALLVPTPYYPGFDR-DLRWRTGIK-------------IVPIHCDS---SNNFQ 181 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~---~l~~~gd~Vl~~~p~y~~~~~-~~~~~~G~~-------------v~~v~~~~---~~~~~ 181 (442)
+|++|+|+++++.++++ ++.++| .|++++|+|+.+.. .+.. .|.+ ++.++++. ..++.
T Consensus 104 ~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~-~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~ 181 (426)
T 1sff_A 104 KTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLAL-TGKVNPYSAGMGLMPGHVYRALYPCPLHGISED 181 (426)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHH-SSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHH
T ss_pred EEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhh-cCCccccccccCCCCCCcEEeCCCccccccchH
Confidence 99999999999999988 677776 89999999987654 4442 5543 66677642 12345
Q ss_pred CCHHHHHHHHHHHHhcCCceeEEEEe-CCCCCCC-cCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHH
Q 046900 182 ITPQALEAAYKEAESKDMRVRGVLIT-NPSNPLG-ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEIL 259 (442)
Q Consensus 182 ~d~~~l~~~l~~~~~~~~~~~~v~l~-~P~NPtG-~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~ 259 (442)
+|++.|++.+++.. .+.++++|+++ +|+| || .+++.+++++|+++|++||++||+||+|+++.+.+..+ ++ .
T Consensus 182 ~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~---~ 255 (426)
T 1sff_A 182 DAIASIHRIFKNDA-APEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AM---E 255 (426)
T ss_dssp HHHHHHHHHHHHTC-CGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GG---G
T ss_pred HHHHHHHHHHHhcc-CCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchh-hh---h
Confidence 78999999887410 01256666553 4577 99 78899999999999999999999999999876655321 11 1
Q ss_pred hhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHH
Q 046900 260 EARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRE 337 (442)
Q Consensus 260 ~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~ 337 (442)
. .+..+.+.||||.+|. |+|+||++++ +.+.+.+.. ....+..++++|.++.+.++... + ....+
T Consensus 256 ~------~~~~~di~s~sK~~~~-GlriG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~---~--~~~~~ 322 (426)
T 1sff_A 256 Q------MGVAPDLTTFAKSIAG-GFPLAGVTGR-AEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE---Q--ENLLQ 322 (426)
T ss_dssp G------TTSCCSEEEECGGGGT-SSCCEEEEEE-HHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH---H--TTHHH
T ss_pred h------cCCCCCEEEEcccccC-CCceEEEEEc-HHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH---h--cCHHH
Confidence 1 1222334599999995 9999999995 555554442 22335568888888886665211 1 11233
Q ss_pred HHHHHHHHHHHHHHh----CC-CeeecCCceEEEEEecCCcccc--cChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCE
Q 046900 338 RLQKRYQMIIEGLRS----AG-IECLKGNAGLFCWMNLSPLLEE--QTREGELALWDSMLHEVKLNISPGSSCHCSEPGW 410 (442)
Q Consensus 338 ~~~~~~~~l~~~L~~----~g-~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~ 410 (442)
.++++++++.+.|++ .. +....+. |+|+|++++..... ....+..++++.|+++ ||.+.||..| +++
T Consensus 323 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~----~~~ 396 (426)
T 1sff_A 323 KANDLGQKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCGPY----YNV 396 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHT-TEECEEESTT----SCE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHHHC-CcEEecCCCC----CCE
Confidence 344444555555443 22 2333445 66899998531100 0112467788888776 9999998764 478
Q ss_pred EEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 411 FRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 411 iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+||+++ ..+++++++++++|++++++.
T Consensus 397 iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 397 LRILVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 999986 448999999999999998765
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=262.41 Aligned_cols=299 Identities=14% Similarity=0.107 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCc-EEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcC--hHHhHhhhcCcEEEEEecC
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNR-IVVTAGATAANELLTFILADPGDALLVPTPYYPG--FDRDLRWRTGIKIVPIHCD 175 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~-i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~--~~~~~~~~~G~~v~~v~~~ 175 (442)
++.+.+.+++.+.++ .+.++ |++++|+++++..++.+++++||.|+++.|+|.+ +...++. .|++++.+|++
T Consensus 46 ~~~~~~~~~la~~~~----~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~-~g~~~~~v~~~ 120 (411)
T 3nnk_A 46 HYMNEVMALYRGVFR----TENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARR-CRAEVHTIEVP 120 (411)
T ss_dssp HHHHHHHHHHHHHHT----CCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred HHHHHHHHHHHHHhC----CCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHHH-cCCeEEEEecC
Confidence 444444444444443 34554 8888999999999999999999999999999977 7777774 89999999986
Q ss_pred CCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccH
Q 046900 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSI 255 (442)
Q Consensus 176 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~ 255 (442)
. ++.+|+++|++++++. ++++|++++|+||||.+++ +++|+++|++||+++|+||+++.... ....
T Consensus 121 ~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~----~~~~ 186 (411)
T 3nnk_A 121 W--GEVFTPDQVEDAVKRI-----RPRLLLTVQGDTSTTMLQP---LAELGEICRRYDALFYTDATASLGGN----PLET 186 (411)
T ss_dssp T--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTBTTB----CCCT
T ss_pred C--CCCCCHHHHHHHHhhC-----CCeEEEEeCCCCCcceecc---HHHHHHHHHHcCCEEEEECCcccCCc----ccch
Confidence 4 4578999999999753 7889999999999999998 77888999999999999999874221 1111
Q ss_pred HHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc------------------------------
Q 046900 256 AEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS------------------------------ 305 (442)
Q Consensus 256 ~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~------------------------------ 305 (442)
. ..+..+++.|+||.++ .+.++||+++ ++.+.+.++...
T Consensus 187 ~---------~~~~d~~~~s~~K~l~-~~~g~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~ 255 (411)
T 3nnk_A 187 D---------VWGLDAVSAGMQKCLG-GPSGTSPITL-SARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVM 255 (411)
T ss_dssp T---------TTTCSEEECCSTTTTC-CCSSEEEEEE-CHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHH
T ss_pred h---------ccCCcEEEecCccccC-CCCceEEEEE-CHHHHHHHhhcccccccccccccccccCCCCcccccchHHHH
Confidence 1 1245588999999854 4456899999 556666555432
Q ss_pred --------ccCCCcHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHHHHHHHHHHhCCCeeecCCc---eEEEEEecCCc
Q 046900 306 --------SFTLISSQTQYLLASMLSNKKFTENY-IKTNRERLQKRYQMIIEGLRSAGIECLKGNA---GLFCWMNLSPL 373 (442)
Q Consensus 306 --------~~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---g~~~~~~~~~~ 373 (442)
..+..+...+.++.+.++. ..++ +++.+++++++++++.+.|++.|+++..+.+ +.++|+.++..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 332 (411)
T 3nnk_A 256 DYWGPERLNHHTEATTALFGARECARL---ILQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQG 332 (411)
T ss_dssp HHHSTTCCCCSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECCTT
T ss_pred hhhccccCCCCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccEEEEECCCC
Confidence 1134455666666555542 2333 6788889999999999999998888776553 67888888753
Q ss_pred ccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEe-e-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 374 LEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCF-A-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 374 ~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~-~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
. +..++.+.|++++||.+.||.. ...++++||++ + ..+++++++++++|++++++..
T Consensus 333 ~------~~~~l~~~l~~~~gi~v~~g~~--~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 333 I------NGDQARKLMLEDFGIEIGTSFG--PLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK 391 (411)
T ss_dssp C------CHHHHHHHHHHHHSEEEEECCG--GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred C------CHHHHHHHHHHhcCeEEeCccC--CCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 2 2668888888777999999843 23457999998 5 2278999999999999998754
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-32 Score=259.50 Aligned_cols=294 Identities=13% Similarity=0.081 Sum_probs=220.6
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcCh--HHhHhhhcCcEEEEE
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGF--DRDLRWRTGIKIVPI 172 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~--~~~~~~~~G~~v~~v 172 (442)
.+..++|+.++++++ .+.++++|++|+|+++++.+++.++++ |.|++++|+|+.+ ...++ ..|++++.+
T Consensus 33 ~~~~~l~~~la~~~g------~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~~~~~~~~-~~g~~~~~v 103 (353)
T 2yrr_A 33 RVNRAIQERLAALFD------PGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQRVAEMAA-LHGLDPEVL 103 (353)
T ss_dssp HHHHHHHHHHHHHHC------CCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHHHHHHHHH-HTTCCEEEE
T ss_pred HHHHHHHHHHHHHhC------CCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHH-HcCCceEEE
Confidence 356788888888774 223478899999999999999999876 8999999998875 34455 389999999
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
++++ ++.+|++.|++.+++. ++++|++++|+||||.+++ +++|.++|++||++||+||+|+. +.. .
T Consensus 104 ~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~D~a~~~---~~~-~ 169 (353)
T 2yrr_A 104 DFPP--GEPVDPEAVARALKRR-----RYRMVALVHGETSTGVLNP---AEAIGALAKEAGALFFLDAVTTL---GML-P 169 (353)
T ss_dssp ECCT--TSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTT---TTS-C
T ss_pred eCCC--CCCCCHHHHHHHHHhC-----CCCEEEEEccCCCcceecC---HHHHHHHHHHcCCeEEEEcCccc---ccc-c
Confidence 9875 3568999999998752 5789999999999999999 67888999999999999999963 222 2
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccC-CCCCceeEEEeecCHHHHHHHH-----------------HccccCCCcHHH
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDL-GLPGFRVGTIYSYNDKVVTTAR-----------------RMSSFTLISSQT 314 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~G~RiG~i~~~~~~~~~~~~-----------------~~~~~~~~s~~~ 314 (442)
.++..+ +..+++.|++|.+ |.+| +||++++ +.+.+.++ .....+..+...
T Consensus 170 ~~~~~~---------~~d~~~~s~~K~~~~~~g--~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (353)
T 2yrr_A 170 FSMRAM---------GVDYAFTGSQKCLSAPPG--LAPIAAS-LEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLL 237 (353)
T ss_dssp CCHHHH---------TCSEEECCTTSTTCCCSS--CEEEEEC-HHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHH
T ss_pred cccccc---------CceEEEecCcccccCCCc--eEEEEEC-HHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHH
Confidence 233332 2236788999965 4456 7999995 44444332 111224456666
Q ss_pred HHHHHHHhcCchhHHHH-HHHHHHHHHHHHHHHHHHHHhCCCeeecCC--ceEEEEEecCCcccccChhhHHHHHHHHHH
Q 046900 315 QYLLASMLSNKKFTENY-IKTNRERLQKRYQMIIEGLRSAGIECLKGN--AGLFCWMNLSPLLEEQTREGELALWDSMLH 391 (442)
Q Consensus 315 q~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 391 (442)
+.++.+.++. ..+. +++.+++++++++++.+.|++.|+++..+. +++++|++++... +..++.+.|.+
T Consensus 238 ~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~ 308 (353)
T 2yrr_A 238 HYALLEALDL---VLEEGVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLVVRPPEGV------DADRLVRALYA 308 (353)
T ss_dssp HHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEEEECCTTC------CHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEEEECCCCC------CHHHHHHHHHH
Confidence 6666666542 2222 667888999999999999988888877654 6777788886422 25678888877
Q ss_pred cCcEEEeCCCCCCCCCCCEEEEEe-ecCCHHHHH-HHHHHHHHHHH
Q 046900 392 EVKLNISPGSSCHCSEPGWFRVCF-ANMSEQTLE-VALKRIHNFMQ 435 (442)
Q Consensus 392 ~~gi~v~pg~~f~~~~~~~iRls~-~~~~~e~i~-~~l~~l~~~l~ 435 (442)
+ ||.+.||..|. .++++|+++ ...++++++ +++++|+++++
T Consensus 309 ~-gi~v~~g~~~~--~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 309 E-GVAVAGGIGPT--RGQVLRLGLMGEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp T-TEECEECCGGG--TTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred C-CEEEeCCcccc--CCCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 7 99999998764 357899999 333778888 99999998875
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=270.40 Aligned_cols=345 Identities=15% Similarity=0.156 Sum_probs=236.7
Q ss_pred CCCceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCC-CcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEE
Q 046900 46 NPSGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGF-RENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 46 ~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 124 (442)
...++|.|+.+.+..+++.+.+.+.+....... .+.... .....|.......++++.++++++ +++++|+
T Consensus 19 ~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--------~~~~~v~ 89 (423)
T 3lvm_A 19 AMKLPIYLDYSATTPVDPRVAEKMMQFMTMDGT-FGNPASRSHRFGWQAEEAVDIARNQIADLVG--------ADPREIV 89 (423)
T ss_dssp -CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSC-CSCTTCTTSHHHHHHHHHHHHHHHHHHHHHT--------CCGGGEE
T ss_pred ccCCCEeecCCCcCCCCHHHHHHHHHHHhhccc-ccCCCccccchhHHHHHHHHHHHHHHHHHcC--------CCCCeEE
Confidence 345667777766655556666666655430000 000000 000011112234566666666654 5688999
Q ss_pred EecChHHHHHHHHHhhcC----CCCeEEEcCCCCcChHHhHhh--hcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcC
Q 046900 125 VTAGATAANELLTFILAD----PGDALLVPTPYYPGFDRDLRW--RTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKD 198 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~----~gd~Vl~~~p~y~~~~~~~~~--~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 198 (442)
+|+|+++++.+++.++.+ +||.|+++.|+|+.+...+.. ..|++++.+++++ ++.+|++.|++++++
T Consensus 90 ~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~----- 162 (423)
T 3lvm_A 90 FTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--NGIIDLKELEAAMRD----- 162 (423)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHCCT-----
T ss_pred EeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC--CCccCHHHHHHhcCC-----
Confidence 999999999999998874 799999999999998776632 2599999999876 467899999998864
Q ss_pred CceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcc
Q 046900 199 MRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSK 278 (442)
Q Consensus 199 ~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK 278 (442)
+++++++++|+||||.+++ +++|+++|+++|++||+||+|+...+ ..... ..+..+++.|+||
T Consensus 163 -~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~----~~~~~---------~~~~di~~~s~sK 225 (423)
T 3lvm_A 163 -DTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKL----PIDLS---------QLKVDLMSFSGHK 225 (423)
T ss_dssp -TEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS----CCCTT---------TSCCSEEEEESTT
T ss_pred -CcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCC----CcChh---------hcCCCEEEechHH
Confidence 7899999999999999999 77788999999999999999875221 11111 1245588999999
Q ss_pred cCCCCCceeEEEeecCHHHHHHHHHc---------cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH
Q 046900 279 DLGLPGFRVGTIYSYNDKVVTTARRM---------SSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEG 349 (442)
Q Consensus 279 ~~g~~G~RiG~i~~~~~~~~~~~~~~---------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (442)
.+|.+| +||++++++. ...+... ...+..+...+.++...+. ...+++++.+++++++++++.+.
T Consensus 226 ~~g~~g--~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~---~~~~~~~~~~~~~~~~~~~l~~~ 299 (423)
T 3lvm_A 226 IYGPKG--IGALYVRRKP-RVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYR---IAKEEMATEMERLRGLRNRLWNG 299 (423)
T ss_dssp TTSCSS--CEEEEECBTT-BCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCC--eEEEEEeccc-cCCCCccccCCcccccccCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 888666 8999985432 2222221 1123445566666655554 23444778889999999999999
Q ss_pred HHhC-CCeeecCCc---eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCC-----------------C
Q 046900 350 LRSA-GIECLKGNA---GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSE-----------------P 408 (442)
Q Consensus 350 L~~~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~-----------------~ 408 (442)
|++. |+++..+.+ +.++++.++.. +..++.+.|.+ |.+.+|..|.... .
T Consensus 300 L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~l~~---i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 369 (423)
T 3lvm_A 300 IKDIEEVYLNGDLEHGAPNILNVSFNYV-------EGESLIMALKD---LAVSSGSACTSASLEPSYVLRALGLNDELAH 369 (423)
T ss_dssp HTTSTTEEEESCSTTBCTTEEEEEETTS-------CHHHHHHHTTT---EECBCCCC-----CCCCHHHHHHTCCHHHHH
T ss_pred HhcCCCEEEeCCccccCCCeEEEEeCCC-------CHHHHHHHHhh---heeccCccccCCCccccHHHHHhCCCccccC
Confidence 9887 888776553 22444454331 25567776643 9999998765421 3
Q ss_pred CEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 409 GWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 409 ~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
+++||+++ ..+++++++++++|++++++.++
T Consensus 370 ~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 370 SSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 78999998 33789999999999999988764
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=267.98 Aligned_cols=340 Identities=14% Similarity=0.094 Sum_probs=234.1
Q ss_pred CceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCc---chHH--HHHHHH-HHHHHHhCCCCccCCC
Q 046900 48 SGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYH---GLKS--FRQAMA-SFMEQIRGGRAKFDLN 121 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---g~~~--lr~~ia-~~l~~~~~~~~~~~~~ 121 (442)
.++|+|+.++|+++ +.+.+.+.+..... ....|++.. |.+. ++++++ +++.+.+| ++++
T Consensus 23 ~~~i~~~~~~~~~~-~~v~~a~~~~~~~~----------~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g----~~~~ 87 (407)
T 2dkj_A 23 REGLELIASENFVS-KQVREAVGSVLTNK----------YAEGYPGARYYGGCEVIDRVESLAIERAKALFG----AAWA 87 (407)
T ss_dssp HTSEECCTTCCCCC-HHHHHHHTSGGGGC----------CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT----CSEE
T ss_pred hcceeeccCCCCCC-HHHHHHHHhhhhcC----------cccCCCcccccCCchHHHHHHHHHHHHHHHHhC----CCcc
Confidence 46789999999984 44444444332110 123454332 4343 444333 45555544 4566
Q ss_pred cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH---HhHhhhcCc--EEEEEecCCCCCCcCCHHHHHHHHHHHHh
Q 046900 122 RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD---RDLRWRTGI--KIVPIHCDSSNNFQITPQALEAAYKEAES 196 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~---~~~~~~~G~--~v~~v~~~~~~~~~~d~~~l~~~l~~~~~ 196 (442)
+|++++|+ +++..++.+++++||.|+++.|+|+.+. ..+.. .|. ..+++++++ .++.+|++.|++.+++.
T Consensus 88 ~i~~~sGt-~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~-~~~~~d~~~l~~~l~~~-- 162 (407)
T 2dkj_A 88 NVQPHSGS-QANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNF-SGKLYKVVSYGVRP-DTELIDLEEVRRLALEH-- 162 (407)
T ss_dssp ECCCSSHH-HHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSH-HHHHSEEEEECCCT-TTSSCCHHHHHHHHHHH--
T ss_pred eEEecchH-HHHHHHHHHhcCCCCEEEEecccccCccchHHHHHh-cCceEEEEecCCCc-ccCccCHHHHHHHHhhc--
Confidence 67777775 5999999999999999999999999883 44443 566 444444342 35789999999999742
Q ss_pred cCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc-CCCCCCCcccHHHHHhhhcCCCCCcEEEEec
Q 046900 197 KDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG-SAFSSSEFVSIAEILEARQYKDSERVHIVYS 275 (442)
Q Consensus 197 ~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~-~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S 275 (442)
++++|++++|+|| .+.+ +++|.++|++||+++|+||+|+. +.+.+.....+ ....++++|
T Consensus 163 ---~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~-----------~~~di~~~s 223 (407)
T 2dkj_A 163 ---RPKVIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPL-----------PYAHVVTST 223 (407)
T ss_dssp ---CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCT-----------TTCSEEEEE
T ss_pred ---CCeEEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCCcc-----------ccccEEEEe
Confidence 6788999999998 4555 78999999999999999999987 44333221110 124578999
Q ss_pred CcccCCCCCceeEEEeecCHHHHHHHHHccccC---CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046900 276 LSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT---LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS 352 (442)
Q Consensus 276 ~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 352 (442)
+||.+ +|+|+||++++++.+.+.+......+ ..+.....++.+.+... ...++++.+++++++++++.+.|++
T Consensus 224 ~sK~l--~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~ 299 (407)
T 2dkj_A 224 THKTL--RGPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEA--LQPEFKEYSRLVVENAKRLAEELAR 299 (407)
T ss_dssp SSGGG--CCCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccC--CCCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99955 68899999996467766665543332 22333333444545421 1245678888999999999999998
Q ss_pred CCCeeec-CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCC----CCCCCCEEEEEeec-----CCHHH
Q 046900 353 AGIECLK-GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSC----HCSEPGWFRVCFAN-----MSEQT 422 (442)
Q Consensus 353 ~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f----~~~~~~~iRls~~~-----~~~e~ 422 (442)
.|+++.. +..++++|++++.... +..++.+.|.+ +||.+.+|..| +...++++|++++. .++++
T Consensus 300 ~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~ 373 (407)
T 2dkj_A 300 RGYRIVTGGTDNHLFLVDLRPKGL-----TGKEAEERLDA-VGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEE 373 (407)
T ss_dssp TTCEEGGGSCSSSEEEEECGGGTC-----CHHHHHHHHHH-TTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGG
T ss_pred CCceeecCCCCceEEEEECcccCC-----CHHHHHHHHHH-cCceecCCcCccccccccCCCceeeecccccccCCCHHH
Confidence 8888775 3567789999864110 25677777755 49999999864 22235789999962 48999
Q ss_pred HHHHHHHHHHHHHH
Q 046900 423 LEVALKRIHNFMQK 436 (442)
Q Consensus 423 i~~~l~~l~~~l~~ 436 (442)
+++++++|++++++
T Consensus 374 i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 374 MPLVAELIDRALLE 387 (407)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999887
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-32 Score=265.55 Aligned_cols=294 Identities=13% Similarity=0.118 Sum_probs=217.9
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh---cCCCCeEEEcCCCCcChHHhHhh---hcCcE
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL---ADPGDALLVPTPYYPGFDRDLRW---RTGIK 168 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l---~~~gd~Vl~~~p~y~~~~~~~~~---~~G~~ 168 (442)
.+..++|++++++++ +++++|++|+|+++++.+++.++ +++||.|+++.|+|+.+...+.. ..|++
T Consensus 69 ~~~~~l~~~la~~~g--------~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~ 140 (406)
T 3cai_A 69 AVLDAAREAVADLVN--------ADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAK 140 (406)
T ss_dssp HHHHHHHHHHHHHHT--------CCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCE
T ss_pred HHHHHHHHHHHHHhC--------CCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCe
Confidence 456788888888875 56789999999999999999887 78999999999999987655442 16999
Q ss_pred EEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCC
Q 046900 169 IVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS 248 (442)
Q Consensus 169 v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~ 248 (442)
++.++++++ ++.+|++.|++.+++ ++++|++++|+||||.+++ +++|.++|+++|++||+|++|+..
T Consensus 141 v~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g--- 207 (406)
T 3cai_A 141 VKWAEVDIE-TGELPTWQWESLISK------STRLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAP--- 207 (406)
T ss_dssp EEEECCCTT-TCCCCGGGHHHHCCT------TEEEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTT---
T ss_pred EEEEecCcc-cCCcCHHHHHHHhCC------CceEEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccC---
Confidence 999998732 356899999998864 7899999999999999998 678888999999999999999842
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeE-EEeecCHHHHHHHHHccc-----------cCCCcHHHHH
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVG-TIYSYNDKVVTTARRMSS-----------FTLISSQTQY 316 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG-~i~~~~~~~~~~~~~~~~-----------~~~~s~~~q~ 316 (442)
....++..+ +..+++.|+||.+| ++ +| |+++ ++.+.+.++.... .+..+...+.
T Consensus 208 -~~~~~~~~~---------~~d~~~~s~~K~~g-~~--~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~ 273 (406)
T 3cai_A 208 -YRLLDIRET---------DADVVTVNAHAWGG-PP--IGAMVFR-DPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLA 273 (406)
T ss_dssp -TCCCCHHHH---------CCSEEEEEGGGGTS-CS--CEEEEES-CHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHH
T ss_pred -CCCCCchhc---------CCCEEEeehhhhcC-CC--cCeEEEE-ehHHHhhcCCcccCCCCCccccccCCCccHHHHH
Confidence 112233322 34578899999887 65 89 9998 4555554443321 2334555554
Q ss_pred HHHHHhcCch------------hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC---ceEEEEEecCCcccccChh
Q 046900 317 LLASMLSNKK------------FTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGN---AGLFCWMNLSPLLEEQTRE 380 (442)
Q Consensus 317 ~~~~~l~~~~------------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~---~g~~~~~~~~~~~~~~~~~ 380 (442)
++.+.++... .+.+++++.+++++++++++.+.|++. |+++..+. ++ ++++.++..
T Consensus 274 a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~------- 345 (406)
T 3cai_A 274 GVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIP-VVSFAVHKV------- 345 (406)
T ss_dssp HHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCS-EEEEEETTB-------
T ss_pred HHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCC-EEEEEECCc-------
Confidence 4444443111 012256788889999999999999986 77776653 55 688887641
Q ss_pred hHHHHHHHHHHcCcEEEeCCC------CCCCC-CCCEEEEEeec-CCHHHHHHHHHHHHH
Q 046900 381 GELALWDSMLHEVKLNISPGS------SCHCS-EPGWFRVCFAN-MSEQTLEVALKRIHN 432 (442)
Q Consensus 381 ~~~~l~~~l~~~~gi~v~pg~------~f~~~-~~~~iRls~~~-~~~e~i~~~l~~l~~ 432 (442)
+..++.+.|.++ ||.+.+|+ .|+.. ..+++||+++. .+++++++++++|++
T Consensus 346 ~~~~~~~~L~~~-gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 346 PADRVVQRLADN-GILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp CHHHHHHHHHHT-TEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHC-CcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 256788888665 99999987 33322 24789999983 378999999999875
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=261.92 Aligned_cols=300 Identities=15% Similarity=0.150 Sum_probs=223.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCC-CcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcC--hHHhHhhhcCcEEEEEe
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDL-NRIVVTAGATAANELLTFILADPGDALLVPTPYYPG--FDRDLRWRTGIKIVPIH 173 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~-~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~--~~~~~~~~~G~~v~~v~ 173 (442)
..++++.++++++ .+. ++|++|+|+++++..++.+++++||.|+++.++|.. +...+. ..|++++.++
T Consensus 58 ~~~l~~~la~~~~--------~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~~~~~ 128 (393)
T 3kgw_A 58 MEEIKQGIQYVFQ--------TRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIAD-RIGARVHQMI 128 (393)
T ss_dssp HHHHHHHHHHHHT--------CCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHH-HcCCceEEEe
Confidence 3455555555543 333 469999999999999999999999999999988753 255566 4899999999
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
++.+ +.+|+++|++.+++. ++++|++++|+||||.+++ +++|.++|++||+++|+||+|+.. ...+
T Consensus 129 ~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~g---~~~~- 194 (393)
T 3kgw_A 129 KKPG--EHYTLQEVEEGLAQH-----KPVLLFLVHGESSTGVVQP---LDGFGELCHRYQCLLLVDSVASLG---GVPI- 194 (393)
T ss_dssp CCTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTTT---TSCC-
T ss_pred CCCC--CCCCHHHHHHHHhhC-----CCcEEEEeccCCcchhhcc---HHHHHHHHHHcCCEEEEECCcccc---Cccc-
Confidence 8754 468999999999863 6889999999999999998 778889999999999999998732 1111
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc-------------------------cC
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS-------------------------FT 308 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~-------------------------~~ 308 (442)
... ..+..+++.|+||.++ .+.++||+++ ++.+.+.+..... .+
T Consensus 195 ~~~---------~~~~d~~~~s~sK~~~-~~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (393)
T 3kgw_A 195 YMD---------QQGIDIMYSSSQKVLN-APPGISLISF-NDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHH 263 (393)
T ss_dssp CTT---------TTTCCEEEEESSSTTC-CCSSCEEEEE-CHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCC
T ss_pred chh---------hcCCCEEEecCccccc-CCCceeEEEE-CHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCC
Confidence 110 1244578899999874 3445899999 5666666543221 12
Q ss_pred CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC----ceEEEEEecCCcccccChhhHHH
Q 046900 309 LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN----AGLFCWMNLSPLLEEQTREGELA 384 (442)
Q Consensus 309 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~ 384 (442)
..+...+.++.+.++... +.++++.++.++++++++.+.|++.|+++..+. .++++|+.++... +..+
T Consensus 264 ~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 335 (393)
T 3kgw_A 264 TTPVTSLYCLRESLALIA--EQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGY------NWRD 335 (393)
T ss_dssp CCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTTB------CHHH
T ss_pred CCCHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCCC------CHHH
Confidence 345666666655554211 233677889999999999999999888876433 3667888887533 2678
Q ss_pred HHHHHHHcCcEEEeCCCCCCCCCCCEEEEEe-ec-CCHHHHHHHHHHHHHHHHHHHhh
Q 046900 385 LWDSMLHEVKLNISPGSSCHCSEPGWFRVCF-AN-MSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 385 l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~-~~-~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
+.+.|++++||.+.+|..+. .++++||++ +. .+++++++++++|++++++..+.
T Consensus 336 ~~~~l~~~~gi~v~~g~~~~--~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~~ 391 (393)
T 3kgw_A 336 IVSYVLDHFSIEISGGLGPT--EERVLRIGLLGYNATTENVDRVAEALREALQHCPKN 391 (393)
T ss_dssp HHHHHHHHHCEECBCCCGGG--TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCBC
T ss_pred HHHHHHHhCCEEEeCCcccC--CCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 88888877799999988543 467999998 63 38999999999999999876543
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=264.95 Aligned_cols=319 Identities=14% Similarity=0.171 Sum_probs=221.1
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCC-cChHHhHhhhcCcE
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYY-PGFDRDLRWRTGIK 168 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y-~~~~~~~~~~~G~~ 168 (442)
.|.+..+..+||+++|++++ .+++++|+|+++++..++.+++++|| +++.|+| ..+...+.. .|++
T Consensus 70 ~y~~~~~~~~l~~~la~~~~----------~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~~-~G~~ 136 (456)
T 2ez2_A 70 AYAGSENFYHLERTVQELFG----------FKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQEK-NGAV 136 (456)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHHH-TTCE
T ss_pred hcccChhHHHHHHHHHHHhC----------CCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHHHHHH-cCCE
Confidence 47667788999999999975 34899999999999999999999999 7889999 776777774 8999
Q ss_pred EEEEecCCC----C----CCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCC-CCCcCCCHHHHHHHHHHHHhcCcEEEEe
Q 046900 169 IVPIHCDSS----N----NFQITPQALEAAYKEAESKDMRVRGVLITNPSN-PLGATIQRSVLEELLDFATRKNIHLVSD 239 (442)
Q Consensus 169 v~~v~~~~~----~----~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~N-PtG~~~~~~~l~~l~~~~~~~~~~vi~D 239 (442)
++.++++++ . +|.+|+++|++++++.. ..++++|++++|+| |||.+++.+++++|+++|++||++||+|
T Consensus 137 ~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t--~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~D 214 (456)
T 2ez2_A 137 FVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYD 214 (456)
T ss_dssp EEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEecccccccccccccccCCCCHHHHHHHHHhcc--ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEE
Confidence 999998732 2 36799999999997621 02358999999998 9999999999999999999999999999
Q ss_pred ccCCc----------CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc---
Q 046900 240 EIYSG----------SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS--- 306 (442)
Q Consensus 240 e~y~~----------~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~--- 306 (442)
|+|+. +.+.+..+.++...... ...++++ |++|.++ +| |+||++++++.+.+.+.....
T Consensus 215 e~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~d~~~~-S~kk~~~-~~-~gG~~~~~~~~~~~~~~~~~~~~~ 286 (456)
T 2ez2_A 215 ATRCVENAYFIKEQEQGFENKSIAEIVHEMFS-----YADGCTM-SGKKDCL-VN-IGGFLCMNDDEMFSSAKELVVVYE 286 (456)
T ss_dssp CTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHT-----TCSEEEE-ETTTTTC-CS-SCEEEEESCHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccCCcchhhhhhhhcc-----cCCEEEE-eCcccCC-CC-ceeEEEECCHHHHHHHHHHHhhcc
Confidence 99986 44554322222111111 1345555 7888765 77 799999866666665543221
Q ss_pred ----cCCCcHHH-HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCC---cccccC
Q 046900 307 ----FTLISSQT-QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSP---LLEEQT 378 (442)
Q Consensus 307 ----~~~~s~~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~---~~~~~~ 378 (442)
....+... +.++.+.++ .+. +...++.++..+++.+.|++.|+++..|.+++++|++++. ......
T Consensus 287 ~~~~~~~~~~~~~~a~a~~~~~---~~~---~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~ 360 (456)
T 2ez2_A 287 GMPSYGGLAGRDMEAMAIGLRE---AMQ---YEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDE 360 (456)
T ss_dssp CCTTTTTCCHHHHHHHHHHHHH---HTC---HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCGGG
T ss_pred CcccccCcchhHHHHHHHHHHH---HhH---HHHHHHHHHHHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCChhh
Confidence 12223222 221222221 110 1223333445567777887778888778889999998742 111111
Q ss_pred hhhHHHHHHHHHHcCcEEEeC-CCCCCC----------CCCCEEEEEeec--CCHHHHHHHHHHHHHHHHHHH
Q 046900 379 REGELALWDSMLHEVKLNISP-GSSCHC----------SEPGWFRVCFAN--MSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 379 ~~~~~~l~~~l~~~~gi~v~p-g~~f~~----------~~~~~iRls~~~--~~~e~i~~~l~~l~~~l~~~~ 438 (442)
+ ....++..|++++||.+.+ |..|.+ ...+++||+++. .+++++++++++|++++++..
T Consensus 361 ~-~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 361 F-PAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp C-HHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred c-cHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 1 1344577775555999766 443311 124789999983 489999999999999987643
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=257.97 Aligned_cols=300 Identities=11% Similarity=0.146 Sum_probs=222.7
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEE-EecChHHHHHHHHHhhcCCCCeEEEcCCCCcC--hHHhHhhhcCcEEEEEec
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIV-VTAGATAANELLTFILADPGDALLVPTPYYPG--FDRDLRWRTGIKIVPIHC 174 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~-~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~--~~~~~~~~~G~~v~~v~~ 174 (442)
.++.+.+.+++.+.++ +++++++ +++|+++++..++.+++++||.|+++.|+|+. +...++. .|++++.+++
T Consensus 43 ~~~~~~l~~~la~~~g----~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~-~g~~~~~v~~ 117 (416)
T 3isl_A 43 TGIMNETMEMLRELFQ----TKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAER-YGANVHMLEC 117 (416)
T ss_dssp HHHHHHHHHHHHHHTT----CCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhC----CCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHh-cCCeeEEEec
Confidence 3444444444444443 4566665 88899999999999999999999999999987 6666774 8999999998
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s 254 (442)
+.+ +.+|+++|++++++. ++++|++++|+||||.+++ +++|.++|++||+++|+|++|+.... ..+
T Consensus 118 ~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~----~~~ 183 (416)
T 3isl_A 118 EWG--TVFDPEDIIREIKKV-----KPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGC----EVK 183 (416)
T ss_dssp CTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTS----CCC
T ss_pred CCC--CCCCHHHHHHHHhhC-----CCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCccccCC----Ccc
Confidence 764 468999999999842 7899999999999999999 77889999999999999999874221 111
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc-----------------------------
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS----------------------------- 305 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~----------------------------- 305 (442)
.. ..+..+++.|+||.++ .+.++||+++ ++.+.+.+....
T Consensus 184 ~~---------~~~~d~~~~s~~K~l~-g~~g~g~~~~-~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~ 252 (416)
T 3isl_A 184 VD---------EWKIDAAIGGTQKCLS-VPSGMAPITY-NERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLS 252 (416)
T ss_dssp TT---------TTTCSEEECCSSSTTC-CCSSEEEEEE-CHHHHHHHHTC------------------CCCCSCSTTCHH
T ss_pred hh---------hcCCCEEEecCccccC-CCCCeEEEEE-CHHHHHHhhccccccccccccccchhccCCCCCCccccchH
Confidence 11 1244588999999753 4456899998 555555554211
Q ss_pred -----------ccCCCcHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHHHHHHHHHHhCCCeeecCCc---eEEEEEec
Q 046900 306 -----------SFTLISSQTQYLLASMLSNKKFTENY-IKTNRERLQKRYQMIIEGLRSAGIECLKGNA---GLFCWMNL 370 (442)
Q Consensus 306 -----------~~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---g~~~~~~~ 370 (442)
..+..+...+.++.+.++ ...++ +++.++.++++++++.+.|++.|+++..+.+ +.++++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~---~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 329 (416)
T 3isl_A 253 QLEDYWSERRLNHHTEATTMLYALREGVR---LVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEI 329 (416)
T ss_dssp HHHHHTSTTCCCSSCCCHHHHHHHHHHHH---HHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEEEEEC
T ss_pred HHHhhhcccCCCCCCCCHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCcEEEEeC
Confidence 123445566666656554 22344 6788899999999999999998888877654 56888888
Q ss_pred CCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHH-HHHHHHHHHHHHHHHH
Q 046900 371 SPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQT-LEVALKRIHNFMQKRE 438 (442)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~-i~~~l~~l~~~l~~~~ 438 (442)
+... +..++.+.|++++||.+.+|... ..++++||++. ..++++ +++++++|+++++++.
T Consensus 330 ~~~~------~~~~l~~~L~~~~gi~v~~g~~~--~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 330 PGGI------DGESVRDMLLAQFGIEIASSFGP--LAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHN 391 (416)
T ss_dssp CTTC------CHHHHHHHHHHHHCEECBCCCST--TTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCC------CHHHHHHHHHHhCCEEEecCCCC--CCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence 7532 26788888877779999998742 34679999993 224555 9999999999998754
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=258.92 Aligned_cols=335 Identities=12% Similarity=0.130 Sum_probs=226.0
Q ss_pred CceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEec
Q 046900 48 SGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA 127 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~ 127 (442)
+++|||+.+.+..+++.+.+.+.+.... ....|+......++++.+++++ + .+++|++|+
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~~~~~~~~~l~~~la~~~----g-----~~~~v~~~~ 66 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHSSG-----------QAGPYGTDELTAQVKRKFCEIF----E-----RDVEVFLVP 66 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTSS-----------CCCSTTCSHHHHHHHHHHHHHH----T-----SCCEEEEES
T ss_pred CceEeeccCCccCCCHHHHHHHHhhccC-----------cccccccchHHHHHHHHHHHHh----C-----CCCcEEEeC
Confidence 4678999875555566666666655310 0124543333445555555543 3 245699999
Q ss_pred ChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh--Hhhhc--CcEEEEEecCCCCCCcCCHHHHHH-HHHHHH-hcCCce
Q 046900 128 GATAANELLTFILADPGDALLVPTPYYPGFDRD--LRWRT--GIKIVPIHCDSSNNFQITPQALEA-AYKEAE-SKDMRV 201 (442)
Q Consensus 128 G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~--~~~~~--G~~v~~v~~~~~~~~~~d~~~l~~-~l~~~~-~~~~~~ 201 (442)
|+++++.+++.+++++||.|+++.|+|..+... +.. . |++++.+|.+ ++.+|+++|++ .+++.. ..+.++
T Consensus 67 ~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~ 142 (356)
T 1v72_A 67 TGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEF-FSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQP 142 (356)
T ss_dssp CHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHH-HTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEE
T ss_pred CccHHHHHHHHHhcCCCCEEEEcCccchhhhhchHHHH-HhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCc
Confidence 999999999999999999999999998776555 663 5 9999999875 35789999998 775310 112368
Q ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCC--CCCCcccHHHHHhhhcCCCCCcEEEEecCccc
Q 046900 202 RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAF--SSSEFVSIAEILEARQYKDSERVHIVYSLSKD 279 (442)
Q Consensus 202 ~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~--~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~ 279 (442)
++|++++|+| ||.+++.+++++|+++|++||++||+|++|..+.. .+.... ...+.. ...+ ++.|+||.
T Consensus 143 ~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~~~~~~------~~d~-~~~s~sK~ 213 (356)
T 1v72_A 143 ACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPA-EMTWKA------GVDA-LSFGATKN 213 (356)
T ss_dssp EEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTT-TTTGGG------TCCE-EEECCGGG
T ss_pred eEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHH-Hhhhhh------cCCE-EEEecccC
Confidence 9999999987 99999999999999999999999999999975321 111111 100101 1223 35689998
Q ss_pred CCCCCceeEEEeecCHHHHHHHHHcccc-C---CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Q 046900 280 LGLPGFRVGTIYSYNDKVVTTARRMSSF-T---LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-G 354 (442)
Q Consensus 280 ~g~~G~RiG~i~~~~~~~~~~~~~~~~~-~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 354 (442)
|. ....||+++ ++.+.+.+...... + ..+...+..+...+.+..+ .+..++++++++++.+.|++. |
T Consensus 214 -g~-~~G~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~L~~~~g 285 (356)
T 1v72_A 214 -GV-LAAEAIVLF-NTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLW-----LRNARKANAAAQRLAQGLEGLGG 285 (356)
T ss_dssp -TC-SSCEEEEES-SGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHH-----HHHHHHHHHHHHHHHHHHTTCTT
T ss_pred -CC-cCccEEEEE-CHHHHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhhCCC
Confidence 42 233348887 45555544332211 1 1122333334455554322 234566778889999999885 8
Q ss_pred CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHH
Q 046900 355 IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNF 433 (442)
Q Consensus 355 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~ 433 (442)
+++..|.+++++|++++. ++++.|.++ ||.+.||. |+ ++++|+++. ..+++++++++++|+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~-gi~v~~g~-~~---~~~iRi~~~~~~~~~~i~~~~~~l~~~ 349 (356)
T 1v72_A 286 VEVLGGTEANILFCRLDS-----------AMIDALLKA-GFGFYHDR-WG---PNVVRFVTSFATTAEDVDHLLNQVRLA 349 (356)
T ss_dssp EEEESCCCSSEEEEEECH-----------HHHHHHHHT-TCBCBCSS-SS---TTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred cEEccCCCccEEEEEcCH-----------HHHHHHHhc-CeEEeccc-cC---CCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 888777788899998742 577777666 99999987 54 679999986 33799999999999998
Q ss_pred HHHHHh
Q 046900 434 MQKRER 439 (442)
Q Consensus 434 l~~~~~ 439 (442)
+++...
T Consensus 350 l~~~~~ 355 (356)
T 1v72_A 350 ADRTQE 355 (356)
T ss_dssp C-----
T ss_pred HHhhcc
Confidence 877543
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=264.70 Aligned_cols=322 Identities=13% Similarity=0.104 Sum_probs=226.9
Q ss_pred CCCceeeeecccc--cc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 46 NPSGVIQMGLAEN--QV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 46 ~~~~~i~l~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
....+|||+.+.+ .+ +++.+.+.+.+..... + .....|+ ..+..+++++++++++ + ++
T Consensus 26 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~----~----~~~~~y~-~~~~~~l~~~la~~~g--------~-~~ 87 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKL----L----HVSNLYE-NPWQEELAHKLVKHFW--------T-EG 87 (375)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHC----S----CCCTTBC-CHHHHHHHHHHHHTSS--------S-CE
T ss_pred CCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhc----c----ccCcccC-CHHHHHHHHHHHhhcC--------C-CC
Confidence 3456789988763 34 3455555444332110 0 0123574 3577899999999863 3 48
Q ss_pred cEEEecChHHHHHHHHHh---hc---CCC-CeEEEcCCCCcChHHhHhhhcCcE-------------EEEEecCCCCCCc
Q 046900 122 RIVVTAGATAANELLTFI---LA---DPG-DALLVPTPYYPGFDRDLRWRTGIK-------------IVPIHCDSSNNFQ 181 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~---l~---~~g-d~Vl~~~p~y~~~~~~~~~~~G~~-------------v~~v~~~~~~~~~ 181 (442)
+|++|+|+++++.+++.+ +. ++| |.|++++|+|+.+...+.. .+.. +..++.
T Consensus 88 ~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------- 159 (375)
T 2eh6_A 88 KVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLS-ATGQPKFHKGFEPLVPGFSYAKL------- 159 (375)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHH-HCBCGGGTTTTCSCCSSEEEECT-------
T ss_pred eEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhh-hcCCccccCCCCCCCCCceeCCC-------
Confidence 999999999999999865 45 788 9999999999988765542 2221 333331
Q ss_pred CCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHh
Q 046900 182 ITPQALEAAYKEAESKDMRVRGVLITNPSNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILE 260 (442)
Q Consensus 182 ~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~ 260 (442)
.|+++|++.+++ ++++|++++|+||||.+ .+.+++++|+++|++||+++|+||+|+++.+.+..+ ++..+.
T Consensus 160 ~d~~~l~~~l~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~- 231 (375)
T 2eh6_A 160 NDIDSVYKLLDE------ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFY-AYQHFN- 231 (375)
T ss_dssp TCHHHHHTTCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGGT-
T ss_pred chHHHHHHHhcC------CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcch-hhhhcC-
Confidence 478999888753 78999999999999999 468889999999999999999999999765443221 222121
Q ss_pred hhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 046900 261 ARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRER 338 (442)
Q Consensus 261 ~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 338 (442)
...+++ ||||.++ +|+|+||++++ +.+.+.++. ....+..+++.|.++.+.++.. .+..++
T Consensus 232 -----~~~d~~---s~SK~~~-~g~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~ 294 (375)
T 2eh6_A 232 -----LKPDVI---ALAKGLG-GGVPIGAILAR-EEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV-------EKLLPH 294 (375)
T ss_dssp -----CCCSEE---EECGGGG-TTSCCEEEEEE-HHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHH-------HHHHHH
T ss_pred -----CCCCEE---EEccccc-CCCCeEEEEEc-HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHHH
Confidence 012333 8899998 79999999995 455554443 2233456778888777766531 156677
Q ss_pred HHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-c
Q 046900 339 LQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-N 417 (442)
Q Consensus 339 ~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~ 417 (442)
++++++++.+.|++.+....+ ..|+++|++++.. ..++++.|+++ ||.+.|+ .++++||+++ .
T Consensus 295 ~~~~~~~l~~~L~~~~~~~~~-~~g~~~~~~~~~~--------~~~~~~~l~~~-gi~~~~~------~~~~iRi~~~~~ 358 (375)
T 2eh6_A 295 VREVGNYFKEKLKELGKGKVK-GRGLMLGLELERE--------CKDYVLKALEK-GLLINCT------AGKVLRFLPPLI 358 (375)
T ss_dssp HHHHHHHHHHHHHHTTSSEEE-EETTEEEEECSSC--------CHHHHHHHHHT-TEECEEE------TTTEEEECCCTT
T ss_pred HHHHHHHHHHHHHHHhcCCce-EEEEEEEEEEcCc--------HHHHHHHHHHC-CCEEecC------CCCEEEEECCCC
Confidence 888889999999887654443 4466899988741 35788888775 9999985 2578999976 4
Q ss_pred CCHHHHHHHHHHHHHHH
Q 046900 418 MSEQTLEVALKRIHNFM 434 (442)
Q Consensus 418 ~~~e~i~~~l~~l~~~l 434 (442)
.+++++++++++|++++
T Consensus 359 ~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 359 IQKEHIDRAISVLREIL 375 (375)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 48999999999998763
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.4e-31 Score=261.35 Aligned_cols=358 Identities=13% Similarity=0.078 Sum_probs=217.1
Q ss_pred CCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 46 NPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 46 ~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
....+||++.+ .++++ ++.+.+.+.+.... ...|....+..++++++++++.+.++ .+++
T Consensus 27 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~------------~~~~~~~~~~~~~~~~l~~~la~~~~----~~~~ 90 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGHGRAEVGERMAAQAAR------------LPFVHGSQFSSDVLEEYAGRLARFVG----LPTF 90 (430)
T ss_dssp TSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHH------------CCCCCTTTCEEHHHHHHHHHHHHHTT----CTTC
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHh------------cccccccccCCHHHHHHHHHHHHhCC----CCCC
Confidence 45678899876 45553 34444444433211 12233334556777888888877654 5678
Q ss_pred cEEEecChHHHHHHHHHhhc--------CCCCeEEEcCCCCcChHHhHhhhcCc---------------EEEEEecCCCC
Q 046900 122 RIVVTAGATAANELLTFILA--------DPGDALLVPTPYYPGFDRDLRWRTGI---------------KIVPIHCDSSN 178 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~~G~---------------~v~~v~~~~~~ 178 (442)
+|++|+|+++++..++++++ .++|.|++.+|+|.++...+.. .+. ++..++.+...
T Consensus 91 ~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (430)
T 3i4j_A 91 RFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLA-ASGMGARRELYTPLMRPEAWPKLPKPDPA 169 (430)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC--------------------------CGGGSCEECCCCTT
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCccccc-ccCccccccccCCcCCCCCceEcCCCccc
Confidence 99999999999999998886 4478999999999987765442 222 12222221100
Q ss_pred -CCcCCHHHHHHHHHHHHhcCCceeEEEEeCC-CC-CCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc
Q 046900 179 -NFQITPQALEAAYKEAESKDMRVRGVLITNP-SN-PLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 179 -~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P-~N-PtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s 254 (442)
....|++.|++.+++... .++ ++++++| +| ++|. +.+.+.+++|.++|++||+++|+||+|.++.+.+..+ .
T Consensus 170 ~~~~~~~~~le~~l~~~~~--~~~-~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~-~ 245 (430)
T 3i4j_A 170 RNGAEDAEGLRALLEREGP--ETV-AAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPL-A 245 (430)
T ss_dssp SCHHHHHTHHHHHHHHHCG--GGE-EEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-G
T ss_pred chhhHHHHHHHHHHHhcCC--CCE-EEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchh-h
Confidence 011256889998875310 144 4555666 56 8886 6688889999999999999999999999876655422 2
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH------ccccCCCcHHHHHHHHHHhcCchh
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR------MSSFTLISSQTQYLLASMLSNKKF 327 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~------~~~~~~~s~~~q~~~~~~l~~~~~ 327 (442)
.... +. .... +.+|||+++ +| +|+||+++ ++.+.+.+.. ....+..++++|.++.++|+..+.
T Consensus 246 ~~~~-~~----~~~d---i~t~sK~l~-~G~~r~G~~~~-~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 315 (430)
T 3i4j_A 246 LSRW-SG----VTPD---IAVLGKGLA-AGYAPLAGLLA-APQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVER 315 (430)
T ss_dssp GGGT-TT----CCCS---EEEECGGGT-TTSSCCEEEEE-CHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred hhhh-cC----CCCc---EEEEccccc-CCccccEEEEE-CHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHc
Confidence 1111 00 0122 347999998 69 99999999 6777777764 233466789999988888863221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEEEEecCCcccccC---hhhHHHHHHHHHHcCcEEEeCCCCC
Q 046900 328 TENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSPLLEEQT---REGELALWDSMLHEVKLNISPGSSC 403 (442)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~gi~v~pg~~f 403 (442)
+++.++.++..+..++.+.+.+.+. ++....+.|. |+|+++.+...... .....++++.|+++ ||.+.|+..+
T Consensus 316 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~ 392 (430)
T 3i4j_A 316 -EDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGL-LLGVVLGDLATGQAFETPGIASRIGAAALKR-GLITYPGSGA 392 (430)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETT-EEEEEEC------------CHHHHHHHHHHT-TEECC-----
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEE-EEEEEeccccccCCCccHHHHHHHHHHHHhC-CCEEEecccc
Confidence 1223344444444445555544444 4555555554 77777753211000 01236788888876 9999998433
Q ss_pred C-CCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 404 H-CSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 404 ~-~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
. +...+++||+++ ..+++++++++++|++++++.
T Consensus 393 ~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 393 EPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp ------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2 223578999987 348999999999999998764
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=250.16 Aligned_cols=298 Identities=12% Similarity=0.090 Sum_probs=211.8
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCC--CcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH--HhHhhhcCcEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDL--NRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD--RDLRWRTGIKIVP 171 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~--~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~--~~~~~~~G~~v~~ 171 (442)
+..++++++.+++.+.++ +++ +.+++|+|+++++.+++.+++++||.|+++.|.|.... ..+. ..|++++.
T Consensus 49 ~~~~~~~~~~~~la~~~g----~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~-~~g~~~~~ 123 (376)
T 3f0h_A 49 EFSSTMLENEKFMLEYAK----APEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHRFVQLCE-IHEIPYVA 123 (376)
T ss_dssp HHHHHHHHHHHHHHHHHT----CCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHH-HTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHhC----CCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHHHHHHHH-HcCCceEE
Confidence 445666677777766655 333 34556999999999999999999999999998776543 2345 37999999
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
++.+. ++.+|++.|++.+.+ +++++++++|+||||.+++ +++|+++|++||+++|+|++|+.+..
T Consensus 124 v~~~~--~~~~d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~---- 188 (376)
T 3f0h_A 124 LKLEH--GKKLTKEKLYEYDNQ------NFTGLLVNVDETSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFLAD---- 188 (376)
T ss_dssp EECCT--TCCCCHHHHHTTTTS------CCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTS----
T ss_pred EeCCC--CCCCCHHHHHHhhcc------CceEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEEcCccccCc----
Confidence 99864 467999999987543 7899999999999999999 88899999999999999999985332
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHHHcc-------------------ccCCCc
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARRMS-------------------SFTLIS 311 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~~~-------------------~~~~~s 311 (442)
...+... +..+++.|+||.++ .+| +|++++ ++.+.+.+.... ..+..+
T Consensus 189 ~~~~~~~---------~~d~~~~s~~K~l~~~~G--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (376)
T 3f0h_A 189 PFNMNEC---------GADVMITGSQKVLACPPG--ISVIVL-APRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPA 256 (376)
T ss_dssp CCCHHHH---------TCSEEEEETTTTTCCCSS--CEEEEE-CHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCC
T ss_pred ccccccc---------CccEEEecCcccccCCCc--eEEEEE-CHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCc
Confidence 1222222 33478899999997 555 688888 556655554321 112233
Q ss_pred HHHHHHHHHHhcCchhHHH--HHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHH
Q 046900 312 SQTQYLLASMLSNKKFTEN--YIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSM 389 (442)
Q Consensus 312 ~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l 389 (442)
...+.++.+.++ ++.+ .+++.++.++++++++.+.|++.|+++..+.....++.-.+... +..++.+.|
T Consensus 257 ~~~~~a~~~al~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~l 327 (376)
T 3f0h_A 257 VGILLQINERLK---EIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHPTTA------NAYDIFLKL 327 (376)
T ss_dssp HHHHHHHHHHHH---HHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEESSS------CHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeCCCC------CHHHHHHHH
Confidence 333333434333 2222 36778888899999999999988877665432222222112211 267888888
Q ss_pred HHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 390 LHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 390 ~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
.+++||.+.||.. ...++++||++. ..+++++++++++|++++++
T Consensus 328 ~~~~gi~v~~g~~--~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 328 KDEYGIWICPNGG--EMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp HHHSSEECEECCG--GGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred HHhCCEEEecCcc--ccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 8877999999843 234678999996 34899999999999998764
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=261.26 Aligned_cols=286 Identities=14% Similarity=0.144 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC------C-CCeEEEcCCCCcChHH-hHhhhcCcE--
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD------P-GDALLVPTPYYPGFDR-DLRWRTGIK-- 168 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~------~-gd~Vl~~~p~y~~~~~-~~~~~~G~~-- 168 (442)
++++++++.+.+.+| +++|++|+|+++++..++.++.. + ++.|++.+|+|.+... .+.. .|.+
T Consensus 82 ~~~~~l~~~la~~~g------~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~-~g~~~~ 154 (397)
T 2ord_A 82 RPQMELAELLSKNTF------GGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTA-TGQPKY 154 (397)
T ss_dssp HHHHHHHHHHHHTTT------SCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHH-SBCHHH
T ss_pred HHHHHHHHHHHHhcC------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhc-cCChhh
Confidence 344444444444322 68999999999999999988863 4 4789999999976443 5553 6765
Q ss_pred ----------EEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCc-CCCHHHHHHHHHHHHhcCcEEE
Q 046900 169 ----------IVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA-TIQRSVLEELLDFATRKNIHLV 237 (442)
Q Consensus 169 ----------v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~-~~~~~~l~~l~~~~~~~~~~vi 237 (442)
++.++. .|+++|++.+++ ++++|++++|+||||. +++.+++++|+++|++||+++|
T Consensus 155 ~~~~~p~~~~~~~~~~-------~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li 221 (397)
T 2ord_A 155 QKPFEPLVPGFEYFEF-------NNVEDLRRKMSE------DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLV 221 (397)
T ss_dssp HGGGCSCCTTEEEECT-------TCHHHHHHHCCT------TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEE
T ss_pred ccccCCCCCCeeEecC-------CCHHHHHHHhhc------CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 666664 278999988764 7899999999999999 9999999999999999999999
Q ss_pred EeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHH
Q 046900 238 SDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQ 315 (442)
Q Consensus 238 ~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q 315 (442)
+||+|.++.+.+. +.++..+.. ...+ .||||.++ +|+|+||++++++ +. .++. ....+..+++.|
T Consensus 222 ~De~~~~~~~~g~-~~~~~~~~~------~~d~---~s~sK~~~-~G~r~G~~~~~~~-~~-~l~~~~~~~~~~~~~~~~ 288 (397)
T 2ord_A 222 FDEVQCGMGRTGK-LFAYQKYGV------VPDV---LTTAKGLG-GGVPIGAVIVNER-AN-VLEPGDHGTTFGGNPLAC 288 (397)
T ss_dssp EECTTTTTTTTSS-SSHHHHHTC------CCSE---EEECGGGG-TTSCCEEEEECST-TC-CCCTTSSCCSSTTCHHHH
T ss_pred EEecccCCccCcc-chhhhhhCC------CCCe---eeeccccC-CCcCeEEEEEchH-hc-ccCCCCcCCCCCCCHHHH
Confidence 9999998766553 233333321 1222 28899998 9999999999655 33 3332 222355688888
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeee--cCCceEEEEEecCCcccccChhhHHHHHHHHHH
Q 046900 316 YLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA--GIECL--KGNAGLFCWMNLSPLLEEQTREGELALWDSMLH 391 (442)
Q Consensus 316 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 391 (442)
.++.+.++.... ++.++.++++++++.+.|++. ++... .+..|.|+|++++... +..++++.|++
T Consensus 289 ~a~~~~l~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~l~~~l~~ 357 (397)
T 2ord_A 289 RAGVTVIKELTK-----EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEV------SNREVATKCFE 357 (397)
T ss_dssp HHHHHHHHHHTS-----TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTS------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECChH------HHHHHHHHHHH
Confidence 888877764221 245667777888888888764 23321 1233457888887522 25678888877
Q ss_pred cCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHH
Q 046900 392 EVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 392 ~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~ 435 (442)
+ ||.+.||. ++++||+++ ..+++++++++++|+++++
T Consensus 358 ~-gi~v~~~~------~~~iRis~~~~~~~e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 358 N-KLLVVPAG------NNTIRFLPPLTVEYGEIDLAVETLKKVLQ 395 (397)
T ss_dssp T-TEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred C-CCEEccCC------CCEEEEECCcCCCHHHHHHHHHHHHHHHh
Confidence 5 99999962 578999965 3389999999999999875
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=252.85 Aligned_cols=299 Identities=10% Similarity=0.030 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH---hHhhhcCcEEEEEec
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR---DLRWRTGIKIVPIHC 174 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~---~~~~~~G~~v~~v~~ 174 (442)
..+++.+++++.+.+|. . +++++++|+|+++++..++.++ +||+|+++.|+|+.+.. .++ ..|++++.+
T Consensus 57 ~~~~~~~~~~~a~~~g~--~-~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~-~~g~~~~~v-- 128 (374)
T 2aeu_A 57 SYFAEKVNEYGLKHLGG--D-ENDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIERSCK-IVNAKYFES-- 128 (374)
T ss_dssp HHHHHHHHHHHHHHHTC--C-TTEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHHHHH-HTTCEEEEE--
T ss_pred hHHHHHHHHHHHHHhCC--C-CcceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHHHHH-HcCcEEEEe--
Confidence 45566777777666551 1 3578999999999999999988 99999999999877544 455 389998887
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeE-EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRG-VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~-v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
.|++++++. + .++++ |++++|+||||. +..++++|.++|++||+++|+||+|+.+..+.....
T Consensus 129 -------~d~~~l~~~-~------~~~~~~v~~~~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~ 192 (374)
T 2aeu_A 129 -------DKVGEILNK-I------DKDTLVIITGSTMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQP 192 (374)
T ss_dssp -------SCHHHHHTT-C------CTTEEEEEECBCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCC
T ss_pred -------CCHHHHHhc-C------CCccEEEEEccCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCcccccccccccC
Confidence 267888776 3 27889 899999999997 778899999999999999999999987531000011
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENY 331 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~ 331 (442)
+.... +..++++|+||.+ +|+|+||++++ +.+.+.++..... +.++++.|.++.+.++.... +.
T Consensus 193 ~~~~~---------~~di~~~S~sK~l--~g~~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~--~~ 258 (374)
T 2aeu_A 193 PALKL---------GADLVVTSTDKLM--EGPRGGLLAGK-KELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNL--ER 258 (374)
T ss_dssp CHHHH---------TCSEEEEETTSSS--SSCSCEEEEEE-HHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCH--HH
T ss_pred Ccccc---------CCcEEEecCcccc--cCcceEEEEEC-HHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhH--HH
Confidence 12222 2347889999985 57899999984 5666666554332 34577888888777765321 11
Q ss_pred HHHHHHHH----HHHHHHHHHHHHhC----CCeee-cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCC
Q 046900 332 IKTNRERL----QKRYQMIIEGLRSA----GIECL-KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSS 402 (442)
Q Consensus 332 ~~~~~~~~----~~~~~~l~~~L~~~----g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~ 402 (442)
+++..+.. +++++.+.+.|... |+.+. .+.+.+|.|.+++.... ..+..+++..+++++||.+.||..
T Consensus 259 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~ll~~~gV~v~~g~~ 335 (374)
T 2aeu_A 259 IRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTIN---IKKLIEIGFNLLKNYGIITITVAG 335 (374)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHH---HHHHHHHHHHHHHHHCEECSTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeeccccccc---ccchHHHHHHHHHhCCEEEecCCC
Confidence 12221111 22256666666653 56654 45565556655432110 012234666777666999999988
Q ss_pred CCCCCCCEEEEEeecCC--HHHHHHHHHHHHHHHHHHH
Q 046900 403 CHCSEPGWFRVCFANMS--EQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 403 f~~~~~~~iRls~~~~~--~e~i~~~l~~l~~~l~~~~ 438 (442)
|. ..++++||+++..+ +++++++++.|++++++..
T Consensus 336 ~~-~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 336 MP-GASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp SC-SSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred CC-CCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 74 34578999997422 2237788888888777654
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=253.40 Aligned_cols=297 Identities=11% Similarity=0.090 Sum_probs=218.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc---CCCCeEEEc-CCCCcChH-HhHhhhcCcEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA---DPGDALLVP-TPYYPGFD-RDLRWRTGIKIV 170 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~---~~gd~Vl~~-~p~y~~~~-~~~~~~~G~~v~ 170 (442)
...++++.++++++.. .++++++|++|+|+++++.+++.++. ++||.|+++ .|+|..+. ..++ ..|++++
T Consensus 39 ~~~~~~~~l~~~~~~~----~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~-~~g~~~~ 113 (385)
T 2bkw_A 39 IFQRVLKNTRAVFKSA----AASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLR-SYGAQVD 113 (385)
T ss_dssp HHHHHHHHHHHHTTCC----GGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHH-HTTCEEE
T ss_pred HHHHHHHHHHHHhCCC----CCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHH-HcCCceE
Confidence 3567788888887643 23567899999999999999999998 899999887 55666553 5566 4899999
Q ss_pred EEec-CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhc--CcEEEEeccCCcCCC
Q 046900 171 PIHC-DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK--NIHLVSDEIYSGSAF 247 (442)
Q Consensus 171 ~v~~-~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~--~~~vi~De~y~~~~~ 247 (442)
.+++ +. ++.+|++.|++++++ .++++|++++|+||||.+++ +++|+++|+++ |++||+||+|+..
T Consensus 114 ~v~~~~~--~~~~d~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~-- 181 (385)
T 2bkw_A 114 VVRPLKI--GESVPLELITEKLSQ-----NSYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIG-- 181 (385)
T ss_dssp EECCSST--TSCCCHHHHHHHHHH-----SCCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTT--
T ss_pred EEecCCC--CCCCCHHHHHHHHhc-----CCCCEEEEEccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccccC--
Confidence 9998 54 467899999999875 26789999999999999998 67889999999 9999999999732
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHH----------------------Hc
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTAR----------------------RM 304 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~----------------------~~ 304 (442)
.. ..++.. .+..+++.|+||.++ .+| +||++++++.+.+.++ ..
T Consensus 182 -~~-~~~~~~---------~~~d~~~~s~~K~~~~~~G--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (385)
T 2bkw_A 182 -CE-EFEFDE---------WGVDFALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENY 248 (385)
T ss_dssp -TS-CCCTTT---------TTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHH
T ss_pred -Cc-cccccc---------cCceEEEecCccccccCCc--ceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhh
Confidence 21 112111 244578899999664 566 4999995443330221 11
Q ss_pred cc-----cCCCcHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHHHHHHHHH-HhCCCeeecC-----CceEEEEEecCC
Q 046900 305 SS-----FTLISSQTQYLLASMLSNKKFTENY-IKTNRERLQKRYQMIIEGL-RSAGIECLKG-----NAGLFCWMNLSP 372 (442)
Q Consensus 305 ~~-----~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L-~~~g~~~~~~-----~~g~~~~~~~~~ 372 (442)
.. .+..+...+.++.+.++. ..+. +++.+++++++++++.+.| ++.|+++..+ ..++++|+.++.
T Consensus 249 ~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (385)
T 2bkw_A 249 EAGKGAYFATPPVQLINSLDVALKE---ILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD 325 (385)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC
T ss_pred hccCCCCCCCCCHHHHHHHHHHHHH---HHHccHHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccCCceEEEecCC
Confidence 11 134566666666666542 2222 5677888999999999999 8878887653 246788998864
Q ss_pred cccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEE-ee----cCCHHHHHHHHHHHHHHHHH
Q 046900 373 LLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVC-FA----NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 373 ~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls-~~----~~~~e~i~~~l~~l~~~l~~ 436 (442)
..++.+.|.++ ||.+.+|..|. ...+++||+ ++ ..+++++++++++|++++++
T Consensus 326 ---------~~~~~~~l~~~-gi~v~~g~~~~-~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 326 ---------PPDVIAFLKSH-GVVIAGGIHKD-IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp ---------HHHHHHHHHHT-TEECBCCCCTT-TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred ---------HHHHHHHHHHC-CeEEeCCCCcc-cCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 45778888665 99999987653 245799999 66 24889999999999988754
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-32 Score=266.38 Aligned_cols=295 Identities=12% Similarity=0.085 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc----CCCC-eEEEcCCCCcChHHhHhh--hcCcEEEE
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA----DPGD-ALLVPTPYYPGFDRDLRW--RTGIKIVP 171 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~----~~gd-~Vl~~~p~y~~~~~~~~~--~~G~~v~~ 171 (442)
++.+.+.+++.+.++ +++++|++|+|+++++.+++.+++ ++|| .|+++.++|+.+...+.. ..|++++.
T Consensus 63 ~~~~~l~~~la~~~~----~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~ 138 (400)
T 3vax_A 63 RGVERAREYLASTVS----AEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDF 138 (400)
T ss_dssp HHHHHHHHHHHHHTT----CCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHcC----CCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEE
Confidence 344444444444433 568899999999999999999998 8999 999999999987665542 26999999
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
+++++ ++.+|+++|++++++ +++++++++|+||||.+++ +++|+++|+++|++||+||+|+... .
T Consensus 139 v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~----~ 203 (400)
T 3vax_A 139 LTPGP--SGRISVEGVMERLRP------DTLLVSLMHVNNETGVIQP---VAELAQQLRATPTYLHVDAAQGYGK----V 203 (400)
T ss_dssp ECCCT--TCCCCHHHHHTTCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEEECTTTTTT----S
T ss_pred EccCC--CCCcCHHHHHHhcCC------CceEEEEECCCCCceeeCc---HHHHHHHHHhcCCEEEEEhhhhcCC----C
Confidence 99875 467899999998864 7899999999999999999 6788999999999999999998422 1
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEe-ecCHHHH---HHHHH---------ccccCCCcHHHHHHH
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIY-SYNDKVV---TTARR---------MSSFTLISSQTQYLL 318 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~-~~~~~~~---~~~~~---------~~~~~~~s~~~q~~~ 318 (442)
..++.. . ..+++.|+||.+|.+| +|+++ ++++.+. ..+.. ....+..+...+.++
T Consensus 204 ~~~~~~---------~-~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 271 (400)
T 3vax_A 204 PGDLTT---------P-IDMISISGHKIGAPKG--VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGL 271 (400)
T ss_dssp GGGGGS---------C-CSEEEEETGGGTSCSS--CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHH
T ss_pred CcChhh---------c-CcEEEEeHHHhCCCCc--eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHH
Confidence 111110 1 3478899999887555 56766 6552111 01111 111234456666666
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc---eEEEEEecCCcccccChhhHHHHHHHHHHcCcE
Q 046900 319 ASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA---GLFCWMNLSPLLEEQTREGELALWDSMLHEVKL 395 (442)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi 395 (442)
.+.++ ...+++++.++.++++++++.+.|+..|+++..+.+ +.++++.++.. +..++.+.|. + ||
T Consensus 272 ~~al~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~-~-gi 339 (400)
T 3vax_A 272 AEAAK---IFEAEHAQWQVAAQDLRSRLLAGLASTSFQVNGDQDHVVPHILNLSFEDV-------DAEAFLVTLK-D-LV 339 (400)
T ss_dssp HHHHH---HHHHSHHHHHHHHHHHHHHHHHHHTTTTCEECSCTTSBCTTEEEEECTTC-------CHHHHHHHHH-H-HH
T ss_pred HHHHH---HHHhhHHHHHHHHHHHHHHHHHhhCCCCEEEeCCcccCCCCEEEEEeCCC-------CHHHHHHHHh-c-Cc
Confidence 55554 224457788899999999999999844788776654 34666676642 2567888887 5 99
Q ss_pred EEeCCCCCCCC-------------C----CCEEEEEe-e-cCCHHHHHHHHHHHHHHHHH
Q 046900 396 NISPGSSCHCS-------------E----PGWFRVCF-A-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 396 ~v~pg~~f~~~-------------~----~~~iRls~-~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
.+.+|..|... . ++++||++ + ..+++++++++++|++++++
T Consensus 340 ~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 340 AVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp HHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred EEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 99998765421 1 48999999 6 33788999999999998764
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=253.78 Aligned_cols=334 Identities=14% Similarity=0.126 Sum_probs=226.9
Q ss_pred CCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC
Q 046900 45 TNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120 (442)
Q Consensus 45 ~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 120 (442)
..+..+||++.+. +++ +++.+.+.+.+...... .....|+. ....++++.++++ ++ .
T Consensus 36 ~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~--------~~~~~~~~-~~~~~l~~~la~~----~~------~ 96 (406)
T 4adb_A 36 QQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFW--------HTGNGYTN-EPVLRLAKKLIDA----TF------A 96 (406)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCS--------CCCTTSCC-HHHHHHHHHHHHH----SS------C
T ss_pred CCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcc--------cccCCcCC-HHHHHHHHHHHhh----CC------C
Confidence 3456788998763 333 23445554443321100 00122322 2234455554444 33 5
Q ss_pred CcEEEecChHHHHHHHHHhhcC-------CC-CeEEEcCCCCcChHHhHhhhcC------------cEEEEEecCCCCCC
Q 046900 121 NRIVVTAGATAANELLTFILAD-------PG-DALLVPTPYYPGFDRDLRWRTG------------IKIVPIHCDSSNNF 180 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~l~~-------~g-d~Vl~~~p~y~~~~~~~~~~~G------------~~v~~v~~~~~~~~ 180 (442)
++|++|+|+++++..++.++.. +| |.|++++|+|..+...+....+ .++..+|.
T Consensus 97 ~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 170 (406)
T 4adb_A 97 DRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY------ 170 (406)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT------
T ss_pred CeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC------
Confidence 6999999999999999998864 55 9999999999988655442222 24444442
Q ss_pred cCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC--CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHH
Q 046900 181 QITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATI--QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEI 258 (442)
Q Consensus 181 ~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~--~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~ 258 (442)
.|+++|++.+++ ++++|+++ |+||||.++ +.+++++|+++|++||++||+||+|+++.+.+..+ +....
T Consensus 171 -~d~~~l~~~l~~------~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~ 241 (406)
T 4adb_A 171 -NDINSASALIDD------STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELY-AYMHY 241 (406)
T ss_dssp -TCHHHHHTTCST------TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HHHHH
T ss_pred -CcHHHHHHHhcC------CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhH-HHHhc
Confidence 378999988753 78888877 999999998 99999999999999999999999999876665432 22222
Q ss_pred HhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHHHhcCchhHHHHHHHHH
Q 046900 259 LEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLASMLSNKKFTENYIKTNR 336 (442)
Q Consensus 259 ~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 336 (442)
.. ..+++ ||||.++ +|+|+||+++ ++.+.+.+.... ..+..+++.|.++.+.++.... ++.+
T Consensus 242 ~~------~~d~~---t~sK~~~-~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~ 305 (406)
T 4adb_A 242 GV------TPDLL---TTAKALG-GGFPVGALLA-TEECARVMTVGTHGTTYGGNPLASAVAGKVLELINT-----PEML 305 (406)
T ss_dssp TC------CCSEE---EECGGGG-TTSCCEEEEE-CHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS-----HHHH
T ss_pred CC------CCCEE---Eechhhc-CCCCeEEEEE-cHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh-----cCHH
Confidence 11 23333 7899999 9999999998 566665554332 2356788888888877763221 3455
Q ss_pred HHHHHHHHHHHHHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEE
Q 046900 337 ERLQKRYQMIIEGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFR 412 (442)
Q Consensus 337 ~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iR 412 (442)
+.++++++++.+.|++.+ .....+..|+++|+.++.... .+..++++.|+++ ||.+.|+. ++++|
T Consensus 306 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~~~-gi~v~~~~------~~~iR 374 (406)
T 4adb_A 306 NGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYA----GQAKQISQEAAKA-GVMVLIAG------GNVVR 374 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTT----TCHHHHHHHHHHT-TEECEESS------TTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcH----HHHHHHHHHHHHC-CcEEeecC------CCeEE
Confidence 666777777777776542 111223346688888876321 1267888888887 99999853 57899
Q ss_pred EEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 413 VCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 413 ls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
++++ ..+++++++++++|++++++..+
T Consensus 375 i~~~~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 375 FAPALNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9654 23899999999999999987754
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=253.62 Aligned_cols=338 Identities=14% Similarity=0.094 Sum_probs=221.4
Q ss_pred CCCceeeeeccc--ccc--c-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC-
Q 046900 46 NPSGVIQMGLAE--NQV--S-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD- 119 (442)
Q Consensus 46 ~~~~~i~l~~~~--n~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~- 119 (442)
....+||++.+. +++ + ++.+.+.+.+..... ..|+...+..+++.++++.+.+.++ ++
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~------------~~~~~~~~~~~~~~~l~~~la~~~~----~~~ 103 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKL------------AHAAANDFYNIPQLELAKKLVTYSP----GNF 103 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTS------------CCCSCSCSCCHHHHHHHHHHHHHSS----CSS
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhC------------ccccccccCCHHHHHHHHHHHHhCC----CCc
Confidence 345688998876 444 2 355555554432210 1121111223444555555555444 44
Q ss_pred CCcEEEecChHHHHHHHHHhhcC-CCCeEEEcCCCCcChHHhHhhhc-------------CcEEEEEecCCC--CCCc--
Q 046900 120 LNRIVVTAGATAANELLTFILAD-PGDALLVPTPYYPGFDRDLRWRT-------------GIKIVPIHCDSS--NNFQ-- 181 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~-~gd~Vl~~~p~y~~~~~~~~~~~-------------G~~v~~v~~~~~--~~~~-- 181 (442)
+++|++|+|+++++..+++++.. +||.|++.+|+|+++...+.... +.+++.+|.+.. .+|+
T Consensus 104 ~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 183 (419)
T 2eo5_A 104 QKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHIN 183 (419)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCC
T ss_pred CCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCcccccccccc
Confidence 78999999999999999987643 48999999999986544322111 125667776432 1112
Q ss_pred ----------CCHHHHH-HHHHHHHhcCCceeEEEEeCCC-CCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCC
Q 046900 182 ----------ITPQALE-AAYKEAESKDMRVRGVLITNPS-NPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS 248 (442)
Q Consensus 182 ----------~d~~~l~-~~l~~~~~~~~~~~~v~l~~P~-NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~ 248 (442)
+|++.|+ +.+++.. ...+++ +++++|+ ||||. +.+.+.+++|+++|++||+++|+||+|.++.+.
T Consensus 184 ~~~~~~~~~~~~~~~l~~~~i~~~~-~~~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~ 261 (419)
T 2eo5_A 184 GYENPSELVNRVIEFIEDYIFVNLV-PPEEVA-GIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRT 261 (419)
T ss_dssp TTTCHHHHHHHHHHHHHHTHHHHTC-CGGGEE-EEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred ccccchhhHHHHHHHHHHHHHhhcc-CCCCEE-EEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccC
Confidence 3678898 8886420 001444 5667885 57896 678888999999999999999999999987665
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHH-HccccCCCcHHHHHHHHHHhcCch
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTAR-RMSSFTLISSQTQYLLASMLSNKK 326 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~-~~~~~~~~s~~~q~~~~~~l~~~~ 326 (442)
+..+ .+. ... ...++ .||||.|| +| +|+||++++++ +. .+. .....+..++++|.++.++++..
T Consensus 262 g~~~-~~~-~~~-----~~~d~---~t~sK~~~-~G~~riG~~~~~~~-~~-~~~~~~~~t~~~n~~~~~aa~aal~~~- 327 (419)
T 2eo5_A 262 GKLF-AIE-NFN-----TVPDV---ITLAKALG-GGIMPIGATIFRKD-LD-FKPGMHSNTFGGNALACAIGSKVIDIV- 327 (419)
T ss_dssp SSSS-GGG-GGT-----CCCSE---EEECGGGG-TTTSCCEEEEEEGG-GC-CC------CCCCCHHHHHHHHHHHHHH-
T ss_pred cchh-hHH-hcC-----CCCCE---EEeccccc-CCccceEEEEEchH-hh-cCCcccCCCCCCCHHHHHHHHHHHHHH-
Confidence 5321 111 111 12333 38999999 69 99999999654 33 333 23334667889999988888631
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC
Q 046900 327 FTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS 406 (442)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~ 406 (442)
+ +.++.++++++++.+.|++. +....+. |+|+|+++.... .... +++.|+++ ||.+.|+.
T Consensus 328 --~----~~~~~~~~~~~~l~~~L~~~-~~~~~~~-g~~~~i~~~~~~-----~~~~-~~~~l~~~-Gv~v~~~~----- 387 (419)
T 2eo5_A 328 --K----DLLPHVNEIGKIFAEELQGL-ADDVRGI-GLAWGLEYNEKK-----VRDR-IIGESFKR-GLLLLPAG----- 387 (419)
T ss_dssp --H----HHHHHHHHHHHHHHHHHTTS-SSEEEEE-TTEEEEECSCHH-----HHHH-HHHHHHHT-TEECEEET-----
T ss_pred --H----HHHHHHHHHHHHHHHHHHHh-hhheEee-eEEEEEEEecCc-----cHHH-HHHHHHHC-CCEEecCC-----
Confidence 2 26778889999999999876 4444444 457788884210 1245 88888765 99999963
Q ss_pred CCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 407 EPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 407 ~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
.+++||+++ ..+++++++++++|++++++
T Consensus 388 -~~~lRis~~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 388 -RSAIRVIPPLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp -TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 468999875 33899999999999998865
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=255.80 Aligned_cols=325 Identities=17% Similarity=0.159 Sum_probs=224.0
Q ss_pred CCCCceeeeeccccccc----HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC
Q 046900 45 TNPSGVIQMGLAENQVS----FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120 (442)
Q Consensus 45 ~~~~~~i~l~~~~n~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 120 (442)
.....+||++.+.+..+ ++.+.+.+.+....... ....|+. .-..++++.++++++ +
T Consensus 33 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--------~~~~~~~-~~~~~l~~~la~~~g----------~ 93 (392)
T 3ruy_A 33 PEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTL--------TSRAFHS-DQLGPWYEKVAKLTN----------K 93 (392)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSC--------CCTTSEE-TTHHHHHHHHHHHHT----------C
T ss_pred CCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccc--------cccccCC-HHHHHHHHHHHHhcC----------C
Confidence 34567899988764432 35555554443211100 0011221 234566666666542 7
Q ss_pred CcEEEecChHHHHHHHHHhhcCC----------CCeEEEcCCCCcChHHhHhhhcCc------------EEEEEecCCCC
Q 046900 121 NRIVVTAGATAANELLTFILADP----------GDALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCDSSN 178 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~l~~~----------gd~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~~~~ 178 (442)
+++++|+|+++++..++.++..+ +|.|+++.|+|.++...+....+. ++..++.
T Consensus 94 ~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 169 (392)
T 3ruy_A 94 EMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY---- 169 (392)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT----
T ss_pred CEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc----
Confidence 89999999999999999877644 689999999998766554321111 2444432
Q ss_pred CCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHH-HHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHH
Q 046900 179 NFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSV-LEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAE 257 (442)
Q Consensus 179 ~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~-l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~ 257 (442)
.|+++|++++++ ++++|++++|+||||.+++.++ +++|+++|++||+++|+||+|.++.+.+..+ ....
T Consensus 170 ---~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~ 239 (392)
T 3ruy_A 170 ---GDLEALKAAITP------NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF-ACDW 239 (392)
T ss_dssp ---TCHHHHHHHCCT------TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSS-GGGG
T ss_pred ---ccHHHHHHHhcc------CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccch-hhhc
Confidence 278999998863 8899999999999999997666 9999999999999999999998876655432 1111
Q ss_pred HHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHHHhcCchhHHHHHHH
Q 046900 258 ILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLASMLSNKKFTENYIKT 334 (442)
Q Consensus 258 ~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 334 (442)
.. ...++ .||||.++ +| +|+||+++ ++.+.+.+.... ..+..+++.+.++.++++... . ++
T Consensus 240 ~~------~~~d~---~~~SK~l~-gG~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~--~~ 303 (392)
T 3ruy_A 240 DN------VTPDM---YILGKALG-GGVFPISCAAA-NRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLE---E--EK 303 (392)
T ss_dssp GT------CCCSE---EEECGGGG-TTTSCCEEEEE-CHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHH---H--TT
T ss_pred cC------CCCCE---EEEchhhh-CChhhhEEEEE-CHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH---h--hh
Confidence 10 11223 37899986 57 99999999 556655544322 235678889998888887422 1 56
Q ss_pred HHHHHHHHHHHHHHHHHhCC---CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEE
Q 046900 335 NRERLQKRYQMIIEGLRSAG---IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWF 411 (442)
Q Consensus 335 ~~~~~~~~~~~l~~~L~~~g---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~i 411 (442)
.++.++++++++.+.|++.+ +....+.++ |+++.++. +..++++.|+++ ||.+.||. ++++
T Consensus 304 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~-~~~~~~~~--------~~~~l~~~l~~~-gi~v~~~~------~~~i 367 (392)
T 3ruy_A 304 LTERSLQLGEKLVGQLKEIDNPMITEVRGKGL-FIGIELNE--------PARPYCEQLKAA-GLLCKETH------ENVI 367 (392)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTEEEEEEETT-EEEEEESS--------CSHHHHHHHHTT-TEECCCBT------TTEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEEeeee-EEEEEEcc--------hHHHHHHHHHHC-CcEEecCC------CCEE
Confidence 67888899999999998874 344455665 55555664 146788888755 99999864 5789
Q ss_pred EEEee-cCCHHHHHHHHHHHHHHH
Q 046900 412 RVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 412 Rls~~-~~~~e~i~~~l~~l~~~l 434 (442)
|++++ ..+++++++++++|++++
T Consensus 368 Ri~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 368 RIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 99954 238999999999999876
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=257.10 Aligned_cols=339 Identities=14% Similarity=0.127 Sum_probs=216.3
Q ss_pred CceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCC----cchHHHHHHHHHHHHHHhCCCCccCCCcE
Q 046900 48 SGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDY----HGLKSFRQAMASFMEQIRGGRAKFDLNRI 123 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~----~g~~~lr~~ia~~l~~~~~~~~~~~~~~i 123 (442)
.+++.|+.+.+..+++.+.+.+.+..... .. .....|... ....++|+++|++++ +++++|
T Consensus 17 ~~~~~Ld~~~~~~~~~~v~~a~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~l~~~la~~~g--------~~~~~v 81 (432)
T 3a9z_A 17 NRKVYMDYNATTPLEPEVIQAVTEAMKEA-WG------NPSSSYVAGRKAKDIINTARASLAKMIG--------GKPQDI 81 (432)
T ss_dssp -CCEECBTTTCCCCCHHHHHHHHHHHHHC-CS------CTTCSSHHHHHHHHHHHHHHHHHHHHHT--------CCGGGE
T ss_pred CCcEEeeCCccCCCCHHHHHHHHHHHHHh-cC------CCccCcHHHHHHHHHHHHHHHHHHHHcC--------CCcCeE
Confidence 45678888776654455554444322100 00 001122211 124688888888874 567899
Q ss_pred EEecChHHHHHHHHHhhc--------CCCCeEEEcCCCCcCh-----------------HHhHhhhcCcEEEEEecCCCC
Q 046900 124 VVTAGATAANELLTFILA--------DPGDALLVPTPYYPGF-----------------DRDLRWRTGIKIVPIHCDSSN 178 (442)
Q Consensus 124 ~~t~G~~~ai~~~~~~l~--------~~gd~Vl~~~p~y~~~-----------------~~~~~~~~G~~v~~v~~~~~~ 178 (442)
++|+|+++++.+++.+++ ++||.|+++.|+|..+ ...++ ..|++++.+|++++
T Consensus 82 ~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~-~~g~~v~~v~~~~~- 159 (432)
T 3a9z_A 82 IFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVE-DQVAEVTFVPVSKV- 159 (432)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHH-TTSCEEEEECCCTT-
T ss_pred EEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHH-hcCcEEEEEecCcc-
Confidence 999999999999999886 5899999999999876 22233 36999999998752
Q ss_pred CCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcC----------cEEEEeccCCcCCCC
Q 046900 179 NFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKN----------IHLVSDEIYSGSAFS 248 (442)
Q Consensus 179 ~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~----------~~vi~De~y~~~~~~ 248 (442)
++.+|++.|++.+++ ++++|++++|+||||.+++ +++|.++|++++ ++||+||+|+...
T Consensus 160 ~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~-- 228 (432)
T 3a9z_A 160 NGQVEVEDILAAVRP------TTCLVTIMLANNETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGK-- 228 (432)
T ss_dssp TSSCCHHHHHHTCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT--
T ss_pred cCCcCHHHHHHhccC------CceEEEEECcccCcccccC---HHHHHHHHHhcCcccccccCCceEEEEEchhhhCC--
Confidence 346899999988764 7899999999999999999 456788888998 9999999997532
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHH---------HccccCCCcHHHHHHHH
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTAR---------RMSSFTLISSQTQYLLA 319 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~---------~~~~~~~~s~~~q~~~~ 319 (442)
...++.... .. +++.|+||.+| .|+||++++++.....+. .....+..+.+.+.++.
T Consensus 229 --~~~~~~~~~--------~d-~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 294 (432)
T 3a9z_A 229 --RRVDVEDLG--------VD-FLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLG 294 (432)
T ss_dssp --SCCCHHHHC--------CS-EEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHH
T ss_pred --cccChhhcC--------CC-EEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHH
Confidence 223443331 22 56899999775 469999996543111111 11122455677777766
Q ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee--cC-----CceEEEEEecCCcccccChhhHHHHHHHHHH
Q 046900 320 SMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECL--KG-----NAGLFCWMNLSPLLEEQTREGELALWDSMLH 391 (442)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~-----~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 391 (442)
++++ +..+++++.++.++++++++.+.|++. |+++. .+ ..+..+++.++.... +..++.+.+
T Consensus 295 aal~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l-- 364 (432)
T 3a9z_A 295 KAAD---LVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQL-----RGYMVLAQC-- 364 (432)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTC-----CHHHHHHHC--
T ss_pred HHHH---HHHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCC-----cHHHHHHHh--
Confidence 6665 224467788899999999999999874 65443 22 123345555554210 134454443
Q ss_pred cCcEEEeCCCCCCCC------------------CCCEEEEEeecC-CHHHHHHHHHHHHHHHHHHHh
Q 046900 392 EVKLNISPGSSCHCS------------------EPGWFRVCFANM-SEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 392 ~~gi~v~pg~~f~~~------------------~~~~iRls~~~~-~~e~i~~~l~~l~~~l~~~~~ 439 (442)
.|+.+.+|..|... ..+++||+++.. +++++++++++|++++++.++
T Consensus 365 -~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~ 430 (432)
T 3a9z_A 365 -QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG 430 (432)
T ss_dssp -SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred -cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 38888887665321 137899999832 799999999999999987654
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-30 Score=253.11 Aligned_cols=332 Identities=14% Similarity=0.128 Sum_probs=223.5
Q ss_pred CCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC
Q 046900 45 TNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120 (442)
Q Consensus 45 ~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 120 (442)
.....+|||+.+. +++ +++.+.+.+.+....... ....| ..++++++++.+.+..+ .
T Consensus 54 ~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~--------~~~~~-----~~~~~~~l~~~la~~~g------~ 114 (420)
T 2pb2_A 54 QQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWH--------TSNVF-----TNEPALRLGRKLIDATF------A 114 (420)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCC--------CCTTS-----CCHHHHHHHHHHHHHSS------C
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhccc--------ccCcc-----CCHHHHHHHHHHHhhCC------C
Confidence 3456789998763 444 345555555543221000 00112 23556666666665533 5
Q ss_pred CcEEEecChHHHHHHHHHhhcC-------CC-CeEEEcCCCCcChHHhHhhhcCcE------------EEEEecCCCCCC
Q 046900 121 NRIVVTAGATAANELLTFILAD-------PG-DALLVPTPYYPGFDRDLRWRTGIK------------IVPIHCDSSNNF 180 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~l~~-------~g-d~Vl~~~p~y~~~~~~~~~~~G~~------------v~~v~~~~~~~~ 180 (442)
++|++|+|+++++..+++++.. +| +.|++.+|+|.++...+....|.+ +..+|.
T Consensus 115 ~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~------ 188 (420)
T 2pb2_A 115 ERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF------ 188 (420)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT------
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC------
Confidence 8999999999999999998865 67 599999999987654332124543 445542
Q ss_pred cCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHH
Q 046900 181 QITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEIL 259 (442)
Q Consensus 181 ~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~ 259 (442)
.|+++|++.+++ ++++|++++++|++|. +++.+.+++|.++|++||+++|+||+|.++.+.+..+ .. +..
T Consensus 189 -~d~~~le~~i~~------~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~-~~-~~~ 259 (420)
T 2pb2_A 189 -NDLHAVKAVMDD------HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLF-AY-MHY 259 (420)
T ss_dssp -TCHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HH-HHH
T ss_pred -CCHHHHHHHhcc------CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHH-HH-Hhc
Confidence 278999988864 7888888777888884 6999999999999999999999999998876655422 22 111
Q ss_pred hhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHH
Q 046900 260 EARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRE 337 (442)
Q Consensus 260 ~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~ 337 (442)
. ...+++ ||||.+| +|+|+||++++ +.+.+.+.. ....+..++++|.++.+.|+.... ++..+
T Consensus 260 ~-----~~~dii---t~sK~l~-~G~~iG~~~~~-~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~-----~~~~~ 324 (420)
T 2pb2_A 260 G-----VTPDIL---TSAKALG-GGFPVSAMLTT-QEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINT-----PEVLQ 324 (420)
T ss_dssp T-----CCCSEE---EECGGGG-TTSCCEEEEEC-HHHHTTCC----CCEECCCHHHHHHHHHHHHHHSS-----HHHHH
T ss_pred C-----CCCCeE---Eeccccc-CCCceEEEEEh-HHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHh-----ccHHH
Confidence 1 013333 7899999 99999999994 555554433 223356788888888777763221 23455
Q ss_pred HHHHHHHHHHHHHHhC--C---CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEE
Q 046900 338 RLQKRYQMIIEGLRSA--G---IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFR 412 (442)
Q Consensus 338 ~~~~~~~~l~~~L~~~--g---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iR 412 (442)
.++++++++.+.|++. + +....+. |+|+|++++.... .+..++++.|+++ ||.+.|+. ++++|
T Consensus 325 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~~~~v~~~~~~~----~~~~~l~~~l~~~-Gi~v~~~~------~~~iR 392 (420)
T 2pb2_A 325 GIHTKRQQFVQHLQAIDEQFDIFSDIRGM-GLLIGAELKPKYK----GRARDFLYAGAEA-GVMVLNAG------ADVMR 392 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEE-TTEEEEEECGGGT----TCHHHHHHHHHHT-TEECEESS------TTEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEEec-ceEEEEEECCCch----HHHHHHHHHHHHC-CCEEEeCC------CCEEE
Confidence 6666677777777653 2 2223344 5578888864210 0256788888875 99999863 46899
Q ss_pred EEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 413 VCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 413 ls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
|+++ ..+++++++++++|++++++.
T Consensus 393 l~~~~~~t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 393 FAPSLVVEEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9975 348999999999999998764
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=255.06 Aligned_cols=326 Identities=15% Similarity=0.120 Sum_probs=219.7
Q ss_pred CCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 46 NPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 46 ~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
.+..+|||+.+. +++ +++.+.+.+.+...... .....| +.....++++.+++++ + ++++
T Consensus 43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~--------~~~~~~-~~~~~~~l~~~la~~~----~----~~~~ 105 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLM--------AMPQTL-PTPMRGEFYRTLTAIL----P----PELN 105 (395)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCC--------CCCTTS-CCHHHHHHHHHHHHTS----C----TTEE
T ss_pred CCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCC--------CCcccc-CCHHHHHHHHHHHHhc----C----CCcC
Confidence 345678998775 444 33444444443321100 001124 2234456666666653 2 4678
Q ss_pred cEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcCh-HHhHhhhcCcE------------EEEEecCCCCCCcCCHHH
Q 046900 122 RIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGF-DRDLRWRTGIK------------IVPIHCDSSNNFQITPQA 186 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~-~~~~~~~~G~~------------v~~v~~~~~~~~~~d~~~ 186 (442)
+|++|+|+++++.+++.++. .+||.|++.+|+|+.. ...+.. .|.+ +..++. .|+++
T Consensus 106 ~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~-~g~~~~~~~~~p~~~~~~~~~~-------~d~~~ 177 (395)
T 1vef_A 106 RVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSV-TWEPKYREPFLPLVEPVEFIPY-------NDVEA 177 (395)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHT-CCCHHHHGGGCSCSSCEEEECT-------TCHHH
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhh-cCCcccccccCCCCCCeeEeCC-------CcHHH
Confidence 99999999999999998764 5789999999999764 345553 5664 333321 47899
Q ss_pred HHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCC
Q 046900 187 LEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYK 265 (442)
Q Consensus 187 l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~ 265 (442)
|++.+++ ++++|+++.++||||.++ +.+++++|+++|++||++||+||+|+++.+.+..+ ++. ....
T Consensus 178 l~~~i~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~-~~~-~~~~---- 245 (395)
T 1vef_A 178 LKRAVDE------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF-AFE-HFGI---- 245 (395)
T ss_dssp HHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-THH-HHTC----
T ss_pred HHHHhcc------CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchh-Hhh-hcCC----
Confidence 9988863 677766555578999875 68889999999999999999999999755444321 221 1110
Q ss_pred CCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 046900 266 DSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRY 343 (442)
Q Consensus 266 ~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 343 (442)
...++ ||||.++ +|+|+||++++ +.+.+.+.. ....+..+++.+.++.+.++.. .+ ....+.+++++
T Consensus 246 -~~d~~---s~sK~~~-~g~~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~---~~--~~~~~~~~~~~ 314 (395)
T 1vef_A 246 -VPDIL---TLAKALG-GGVPLGVAVMR-EEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYL---ER--TRLWERAAELG 314 (395)
T ss_dssp -CCSEE---EECGGGG-TTSSCEEEEEE-HHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHH---HH--HTTHHHHHHHH
T ss_pred -CCCEE---EEccccc-CCCceEEEEeh-HHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHH
Confidence 12232 8899998 59999999995 445554443 2223456788888877777532 11 34567788888
Q ss_pred HHHHHHHHhCCCee--ecCCceEEEEEecCCcccccChhhHHHHHHHHH-HcCcEEEeCCCCCCCCCCCEEEEEee-cCC
Q 046900 344 QMIIEGLRSAGIEC--LKGNAGLFCWMNLSPLLEEQTREGELALWDSML-HEVKLNISPGSSCHCSEPGWFRVCFA-NMS 419 (442)
Q Consensus 344 ~~l~~~L~~~g~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~gi~v~pg~~f~~~~~~~iRls~~-~~~ 419 (442)
+++.+.|++.+.++ ..+..|+++|++++.. ..++++.|+ ++ ||.+.|+ +++++||+++ ..+
T Consensus 315 ~~l~~~l~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~l~~~l~~~~-gi~v~~~------~~~~iRi~~~~~~~ 379 (395)
T 1vef_A 315 PWFMEKLRAIPSPKIREVRGMGLMVGLELKEK--------AAPYIARLEKEH-RVLALQA------GPTVIRFLPPLVIE 379 (395)
T ss_dssp HHHHHHHHTSCCTTEEEEEEETTEEEEEESSC--------SHHHHHHHHHHH-CEECEES------STTEEEECCCTTCC
T ss_pred HHHHHHHHHhhcCceEEEEEEEEEEEEEEcCh--------HHHHHHHHHHHC-CeEEecC------CCCEEEEeCCCCCC
Confidence 89999998775432 1234456889988741 457888888 55 9999985 2578999876 348
Q ss_pred HHHHHHHHHHHHHHH
Q 046900 420 EQTLEVALKRIHNFM 434 (442)
Q Consensus 420 ~e~i~~~l~~l~~~l 434 (442)
++++++++++|++++
T Consensus 380 ~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 380 KEDLERVVEAVRAVL 394 (395)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=253.65 Aligned_cols=363 Identities=11% Similarity=0.061 Sum_probs=224.2
Q ss_pred CCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+|||+.+ .+.++ ++.+.+.+.+... ....|....+..+++.++++++.+..+. -.
T Consensus 60 d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~------------~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~ 124 (453)
T 4ffc_A 60 DADGNSFIDLGAGIAVTTVGASHPAVAAAIADQAT------------HFTHTCFMVTPYEQYVQVAELLNALTPG---DH 124 (453)
T ss_dssp ETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHH------------HCSCCTTTTSCCHHHHHHHHHHHHHSSC---SS
T ss_pred eCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHH------------hccccccCcCCCHHHHHHHHHHHHhCCC---CC
Confidence 3445678999876 45553 3555554443321 1123433345567777888888776431 12
Q ss_pred CCcEEEecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhhcC-------------cEEEEEecCC--CCCCcC
Q 046900 120 LNRIVVTAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTG-------------IKIVPIHCDS--SNNFQI 182 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~G-------------~~v~~v~~~~--~~~~~~ 182 (442)
.++|++|+|+++++..+++.+.. .++.|++.+++|.++...+....| ..+..+|... .+.+..
T Consensus 125 ~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 204 (453)
T 4ffc_A 125 DKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGL 204 (453)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTC
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCcccc
Confidence 57999999999999999977642 458999999999887655432111 1344444431 112223
Q ss_pred C-HHHHHHHHHHHHhc-CCceeEEEEeCCCCCCC--cCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHH
Q 046900 183 T-PQALEAAYKEAESK-DMRVRGVLITNPSNPLG--ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEI 258 (442)
Q Consensus 183 d-~~~l~~~l~~~~~~-~~~~~~v~l~~P~NPtG--~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~ 258 (442)
+ .+.++..+...... ..+..++++++|.||+| .+.+.+.+++|.++|++||+++|+||+|.++.+.+.. ......
T Consensus 205 ~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~-~a~~~~ 283 (453)
T 4ffc_A 205 TGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAW-FASEHE 283 (453)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-STHHHH
T ss_pred chHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCccccc-chhhhc
Confidence 3 22232222111100 12445778888988776 4457788999999999999999999999987665542 222211
Q ss_pred HhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHH
Q 046900 259 LEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLSNKKFTENYIKTNR 336 (442)
Q Consensus 259 ~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 336 (442)
+.+..+.||||+++ .|+|+||+++ ++.+.+.+.. ....+..++++|.++.+.++.... ++++++.+
T Consensus 284 ---------~~~pdi~t~sK~~~-~G~~~G~~~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~ 351 (453)
T 4ffc_A 284 ---------GIVPDIVTMAKGIA-GGMPLSAVTG-RAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE-LDLPARAR 351 (453)
T ss_dssp ---------TCCCSEEEECGGGG-TTSSCEEEEE-EHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHH
T ss_pred ---------CCCcchHhhhhhhc-CCcCeEEEEE-CHHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhh-hhHHHHHH
Confidence 11222458999998 5999999998 5666655543 233466788999988888763211 11233333
Q ss_pred HHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcc-cccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEe
Q 046900 337 ERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLL-EEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCF 415 (442)
Q Consensus 337 ~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~ 415 (442)
+.....++.+.+.+.+.......+..|+|+|+++.... .........+++..|+++ ||.+.|+..| .+++|+++
T Consensus 352 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi~~ 426 (453)
T 4ffc_A 352 AIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQ-GVLILTCGTF----GNVIRLLP 426 (453)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECCEECTT----SCEEEECC
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHHhC-CCEEecCCCC----CCEEEEEC
Confidence 33333344444444444322222333568888774310 001122467788888777 9999997654 35899987
Q ss_pred e-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 416 A-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 416 ~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
+ ..+++++++++++|++++++..+
T Consensus 427 ~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (453)
T 4ffc_A 427 PLVIGDDLLDEGITALSDIIRAKAS 451 (453)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 6 33899999999999999987654
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=246.86 Aligned_cols=332 Identities=13% Similarity=0.081 Sum_probs=220.8
Q ss_pred CCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 46 NPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 46 ~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
....+|||+.+ .++++ ++.+.+.+.+..... ...| ..+..++++++++++.+..+ ++
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-----------~~~~--~~~~~~~~~~l~~~la~~~~------~~ 94 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKL-----------LHTS--NLYYNENIAAAAKNLAKASA------LE 94 (395)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTC-----------SCCC--TTSBCHHHHHHHHHHHHHHT------CS
T ss_pred CCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhc-----------cccc--cccCCHHHHHHHHHHHHhcC------CC
Confidence 45678999987 45553 355555555432210 0111 11234666666666666543 68
Q ss_pred cEEEecChHHHHHHHHHhhc-------CCCCeEEEcCCCCcChHHhHhhhc------------CcEEEEEecCCCCCCcC
Q 046900 122 RIVVTAGATAANELLTFILA-------DPGDALLVPTPYYPGFDRDLRWRT------------GIKIVPIHCDSSNNFQI 182 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~-------~~gd~Vl~~~p~y~~~~~~~~~~~------------G~~v~~v~~~~~~~~~~ 182 (442)
+|++|+|+++++..+++++. .++|.|++.+|+|.++...+.... +.++..++. .
T Consensus 95 ~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 167 (395)
T 3nx3_A 95 RVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------N 167 (395)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------T
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------C
Confidence 99999999999999988775 457999999999987654333111 234555543 2
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhh
Q 046900 183 TPQALEAAYKEAESKDMRVRGVLITNPSNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEA 261 (442)
Q Consensus 183 d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~ 261 (442)
|+++|++++++ ++++++++.++|++|.+ .+.+.+++|.++|++||+++|+||+|.++...+..+ .....
T Consensus 168 d~~~l~~~l~~------~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~-~~~~~--- 237 (395)
T 3nx3_A 168 DISSVEKLVNE------KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFF-AYEHA--- 237 (395)
T ss_dssp CHHHHHTTCCT------TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGG---
T ss_pred CHHHHHHhccC------CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcch-hHHhc---
Confidence 78999988753 67788877777777766 678889999999999999999999999875544322 11111
Q ss_pred hcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHH-HHHHHHc--cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 046900 262 RQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKV-VTTARRM--SSFTLISSQTQYLLASMLSNKKFTENYIKTNRER 338 (442)
Q Consensus 262 ~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~-~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 338 (442)
+....+.||||.++ .|+|+||+++ ++.+ .+.+... ...+..+++++.++.+.++.... +++.++.++.
T Consensus 238 ------~~~~d~~t~sK~~~-~G~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~-~~~~~~~~~~ 308 (395)
T 3nx3_A 238 ------QILPDIMTSAKALG-CGLSVGAFVI-NQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE-EKILENVNKL 308 (395)
T ss_dssp ------TCCCSEEEECGGGT-TTSCCEEEEE-CHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH-TTHHHHHHHH
T ss_pred ------CCCCCEEEeccccc-CCCceEEEEE-chhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 11222458999998 6999999999 4555 6665543 23356788888888887763211 1223333444
Q ss_pred HHHHHHHHHHHHHhCC-CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-
Q 046900 339 LQKRYQMIIEGLRSAG-IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA- 416 (442)
Q Consensus 339 ~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~- 416 (442)
.+..++.+.+.+.+.. +....+ .|+|+|+.++... +..++++.|+++ ||.+.|+. ++++||+++
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~------~~~~~~~~l~~~-Gi~v~~~~------~~~iRi~~~~ 374 (395)
T 3nx3_A 309 TPYLEQSLDELINEFDFCKKRKG-LGFMQGLSLDKSV------KVAKVIQKCQEN-ALLLISCG------ENDLRFLPPL 374 (395)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEE-ETTEEEEEECTTS------CHHHHHHHHHHT-TEECEEET------TTEEEECCCT
T ss_pred HHHHHHHHHHHHHhCCCeEEEEe-EEEEEEEEeCCcc------hHHHHHHHHHHC-CCEEecCC------CCEEEEECCC
Confidence 4444445544444443 333333 3558888887531 256788888777 99999863 578999865
Q ss_pred cCCHHHHHHHHHHHHHHHHH
Q 046900 417 NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 417 ~~~~e~i~~~l~~l~~~l~~ 436 (442)
..+++++++++++|++++++
T Consensus 375 ~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 375 ILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 23899999999999998763
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=249.47 Aligned_cols=301 Identities=15% Similarity=0.119 Sum_probs=206.9
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCe--EEEcCCCCcChHH--hH-hh
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDA--LLVPTPYYPGFDR--DL-RW 163 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~--Vl~~~p~y~~~~~--~~-~~ 163 (442)
..|.+..+..+|+++++++++ .+..++++|+++++.+++.+++.+||. |+++.++|..+.. .+ .
T Consensus 42 ~~~~~~~~~~~l~~~la~~~~----------~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~- 110 (359)
T 3pj0_A 42 DIYGNGAVIEDFETKIAKILG----------KQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKE- 110 (359)
T ss_dssp CBTTBSHHHHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHH-
T ss_pred CcccCCHHHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcchHHH-
Confidence 356666678999999999875 222355578889999999999888886 5555555443221 12 3
Q ss_pred hcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC-CcCCCHHHHHHHHHHHHhcCcEEEEeccC
Q 046900 164 RTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPL-GATIQRSVLEELLDFATRKNIHLVSDEIY 242 (442)
Q Consensus 164 ~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPt-G~~~~~~~l~~l~~~~~~~~~~vi~De~y 242 (442)
..|++++.++.+ ++.+|+++|+++ . .++++|+++||+||| |.+++.+++++|+++|++||++||+|++|
T Consensus 111 ~~g~~~~~v~~~---~~~~d~~~l~~~-~------~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~ 180 (359)
T 3pj0_A 111 LQQITPLLLGTA---NQLLTIDDIKSL-R------EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGAR 180 (359)
T ss_dssp HHCCEEEECSCT---TSCCCHHHHHTC-S------SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred hcCceEEecCCc---CCCcCHHHHHhc-c------CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcc
Confidence 379999998863 457999999886 2 378999999999998 79999999999999999999999999998
Q ss_pred CcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc----CCCcHHHHHHH
Q 046900 243 SGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF----TLISSQTQYLL 318 (442)
Q Consensus 243 ~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~----~~~s~~~q~~~ 318 (442)
..+.... ...+...+... .+ +++.|+||.++.++ . ||+++ ++.+.+.++..... .....+.+.++
T Consensus 181 ~~~~~~~-~~~~~~~~~~~-----~d--~~~~s~sK~~~~~~-g-g~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~a~ 249 (359)
T 3pj0_A 181 LWEITPF-YQKSAEEICAL-----FD--SVYVSFYKGIGGIA-G-AILAG-NDDFVQEAKIWKRRYGGDLISLYPYILSA 249 (359)
T ss_dssp CGGGHHH-HTCCHHHHHTT-----CS--EEEEESSSTTCCSS-C-EEEEE-CHHHHHHHHHHHHHTTCCCSCCHHHHHHH
T ss_pred hhcchhh-hCCCHHHhhcc-----CC--EEEEeccccCCCcc-e-EEEEC-CHHHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 7533110 01133333321 12 44569999987553 2 77777 66676666543211 11122222222
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee-cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEE
Q 046900 319 ASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECL-KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLN 396 (442)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~ 396 (442)
...+ +.+. +..+.+.++++++.+.|+++ |+++. .+.+++++|++++.... .+..++.+.|.++ ||.
T Consensus 250 ~~~l------~~~~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~-GV~ 317 (359)
T 3pj0_A 250 DYYF------EKRI-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSAD----EIGAILTKIQDET-GVG 317 (359)
T ss_dssp HHHH------HHHG-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHH----HHHHHHHHHHHHH-CEE
T ss_pred HHHH------HHHH-HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccc----hhHHHHHHHHHhc-CcE
Confidence 2222 2222 23345677888999999987 88885 45666688888764211 1356777777666 999
Q ss_pred EeCCCCCCCCCCCEEEEEee----cCCHHHHHHHHHHHHHH
Q 046900 397 ISPGSSCHCSEPGWFRVCFA----NMSEQTLEVALKRIHNF 433 (442)
Q Consensus 397 v~pg~~f~~~~~~~iRls~~----~~~~e~i~~~l~~l~~~ 433 (442)
+.||..|+..+.+++|++++ ..+.+++++++++|.+.
T Consensus 318 v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 318 ISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp CCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred ecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 99998887555678999886 23789999999999875
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=251.63 Aligned_cols=325 Identities=16% Similarity=0.222 Sum_probs=229.7
Q ss_pred CceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEec
Q 046900 48 SGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA 127 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~ 127 (442)
.++|||+.+.++++ +.+.+.+.+... ...|.+..+..++|++++++++ .+++++++
T Consensus 30 ~~~id~~~~~~~~~-~~v~~a~~~~~~-------------~~~y~~~~~~~~l~~~la~~~~----------~~~~v~~~ 85 (399)
T 2oga_A 30 VPFLDLKAAYEELR-AETDAAIARVLD-------------SGRYLLGPELEGFEAEFAAYCE----------TDHAVGVN 85 (399)
T ss_dssp BCSCCHHHHHHHTH-HHHHHHHHHHHH-------------HTCCSSSHHHHHHHHHHHHHTT----------SSEEEEES
T ss_pred CcccccCcCCCCCC-HHHHHHHHHHHh-------------cCCCCCchhHHHHHHHHHHHHC----------CCeEEEec
Confidence 36789999888776 444444443321 1246556788999999999975 22677788
Q ss_pred ChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 128 GATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 128 G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
|+++++..++.++ +++||.|+++.|+|+.+...++. .|++++.++++++ ++.+|++.|++.+++ ++++|+
T Consensus 86 ~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~-~g~~~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~- 156 (399)
T 2oga_A 86 SGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSA-TGATPVPVEPHED-HPTLDPLLVEKAITP------RTRALL- 156 (399)
T ss_dssp CHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHH-TTCEEEEECBCSS-SSSBCHHHHHHHCCT------TEEEEC-
T ss_pred CHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHH-CCCEEEEEecCCC-CCCcCHHHHHHhcCC------CCeEEE-
Confidence 8899999999999 89999999999999999998885 8999999998753 577999999998864 677666
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC-CCCCCcccHHHHHhhhcCCCCCcEEEEecC--cccCCCC
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA-FSSSEFVSIAEILEARQYKDSERVHIVYSL--SKDLGLP 283 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~-~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~--SK~~g~~ 283 (442)
|+||||.+.+ +++|.++|+++|++||+||+|+.+. +++.. + . . . ..+++.|+ ||.+|.+
T Consensus 157 --~~n~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~---~---~-~-----~-~di~~~S~~~sK~~~~~ 218 (399)
T 2oga_A 157 --PVHLYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRGRR---I---G-A-----G-SSVAAFSFYPGKNLGCF 218 (399)
T ss_dssp --CBCGGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETTEE---T---T-C-----T-TCEEEEECCTTSSSCCS
T ss_pred --EeCCcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCCee---c---c-c-----c-cCEEEEeCCCCccCCcC
Confidence 6789999987 7888899999999999999998653 22211 1 0 0 0 13678888 7999977
Q ss_pred CceeEEEeecCHHHHHHHHHcccc--------------CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH
Q 046900 284 GFRVGTIYSYNDKVVTTARRMSSF--------------TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEG 349 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~~~--------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (442)
| |+||++++++.+.+.++..... +..+++.+.++.+.++. +++..+..++.++++.+.
T Consensus 219 G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~-------~~~~~~~~~~~~~~l~~~ 290 (399)
T 2oga_A 219 G-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH-------LDSWNGRRSALAAEYLSG 290 (399)
T ss_dssp S-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHH
T ss_pred C-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 9 9999999667776665543221 23456666665555543 222334445567778888
Q ss_pred HHhC-CCeee-cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCC-----------CC---C------
Q 046900 350 LRSA-GIECL-KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCH-----------CS---E------ 407 (442)
Q Consensus 350 L~~~-g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~-----------~~---~------ 407 (442)
|.+. |+++. .+.++.++|+.++-... +..++.+.|.++ ||.+.++.... .. .
T Consensus 291 L~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 364 (399)
T 2oga_A 291 LAGLPGIGLPVTAPDTDPVWHLFTVRTE-----RRDELRSHLDAR-GIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESF 364 (399)
T ss_dssp TTTCTTCBCCCCCTTEECCCSSEEEECS-----SHHHHHHHHHHT-TBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHH
T ss_pred hccCCCccccCCCCCCcceeEEEEEECC-----CHHHHHHHHHHC-CCceecCCCCccccchhhcccCCCCCCChhHHHH
Confidence 8876 66654 34455666533321101 256788888765 99998753110 00 0
Q ss_pred -CCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 408 -PGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 408 -~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.+++||++. ..++++++++++.|++++++.
T Consensus 365 ~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 365 ARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp HHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred HhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 257999986 348999999999999988653
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=250.19 Aligned_cols=311 Identities=14% Similarity=0.134 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhh------------
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWR------------ 164 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~------------ 164 (442)
+++.++++.+.+.++ .++++|++|+|+++++..+++++. ..+|.|++.+|+|+++...+...
T Consensus 85 ~~~~~l~~~la~~~~----~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 160 (433)
T 1zod_A 85 RPVVDLATRLANITP----PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPA 160 (433)
T ss_dssp HHHHHHHHHHHHHSC----TTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCC
T ss_pred HHHHHHHHHHHHhCC----CCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCC
Confidence 445555555555443 467899999999999999988653 24589999999998765432211
Q ss_pred -cCcEEEEEecCCCCCCc--------CCHHHHHHHHHHHHhcCCceeEEEEeCCC-CCCCc-CCCHHHHHHHHHHHHhcC
Q 046900 165 -TGIKIVPIHCDSSNNFQ--------ITPQALEAAYKEAESKDMRVRGVLITNPS-NPLGA-TIQRSVLEELLDFATRKN 233 (442)
Q Consensus 165 -~G~~v~~v~~~~~~~~~--------~d~~~l~~~l~~~~~~~~~~~~v~l~~P~-NPtG~-~~~~~~l~~l~~~~~~~~ 233 (442)
.|+..++++......|. +|++.|++.+++. ...+++ +++++|+ ||||. +.+.+.+++|+++|++||
T Consensus 161 ~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~-~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~ 237 (433)
T 1zod_A 161 AVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ--SSGNLA-AFIAEPILSSGGIIELPDGYMAALKRKCEARG 237 (433)
T ss_dssp CTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHH--CCSCEE-EEEECSEETTTTCEECCTTHHHHHHHHHHHHT
T ss_pred CCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhc--CCCCeE-EEEEccccCCCCcccCCHHHHHHHHHHHHHhC
Confidence 24444444422111222 3689999988752 112454 5666774 88996 568888999999999999
Q ss_pred cEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--cc--ccCC
Q 046900 234 IHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MS--SFTL 309 (442)
Q Consensus 234 ~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~--~~~~ 309 (442)
+++|+||+|.++.+.+.. ..+. ...- ... +.||||.|| .|+|+||+++ ++.+.+.+.. .. ..+.
T Consensus 238 ~~li~DEv~~~~g~~g~~-~~~~-~~~~-----~~d---i~s~sK~~~-~G~~ig~~~~-~~~~~~~~~~~~~~~~~t~~ 305 (433)
T 1zod_A 238 MLLILDEAQTGVGRTGTM-FACQ-RDGV-----TPD---ILTLSKTLG-AGLPLAAIVT-SAAIEERAHELGYLFYTTHV 305 (433)
T ss_dssp CEEEEECTTTTTTTTSSS-STHH-HHTC-----CCS---EEEECHHHH-TTSSCEEEEE-CHHHHHHHHHTTCCCCCTTT
T ss_pred CEEEEeccccCCCcCchH-hHHh-hcCC-----CCC---EEEeccccc-CCCCeeEEEE-hHHHHHhhccCCCCCCCCCC
Confidence 999999999987655532 2222 1110 122 348999998 5999999999 5666666654 22 3355
Q ss_pred CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh----CC-CeeecCCceEEEEEecCCccc--ccChhhH
Q 046900 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS----AG-IECLKGNAGLFCWMNLSPLLE--EQTREGE 382 (442)
Q Consensus 310 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~g~~~~~~~~~~~~--~~~~~~~ 382 (442)
.++++|.++.++++... + ....++++++++++.+.|++ .. +....+. |+|+|++++.... .......
T Consensus 306 ~~~~~~~a~~aal~~~~---~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~ 379 (433)
T 1zod_A 306 SDPLPAAVGLRVLDVVQ---R--DGLVARANVMGDRLRRGLLDLMERFDCIGDVRGR-GLLLGVEIVKDRRTKEPADGLG 379 (433)
T ss_dssp TCHHHHHHHHHHHHHHH---H--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEEEETTTTEECTTHH
T ss_pred cCHHHHHHHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCCChHHH
Confidence 68888888777775211 1 11234444455555555544 22 2333444 4577888754210 0001235
Q ss_pred HHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 383 LALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 383 ~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.++++.|+++ ||.+.||..|+ .++++||+++ ..+++++++++++|++++++.
T Consensus 380 ~~~~~~l~~~-Gv~v~~~~~~~--~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 380 AKITRECMNL-GLSMNIVQLPG--MGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp HHHHHHHHHT-TEECCEECCTT--SCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCeEeccCCCC--CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 6788888866 99999998764 3579999865 348999999999999988753
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=247.91 Aligned_cols=324 Identities=12% Similarity=0.073 Sum_probs=218.3
Q ss_pred eecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHH
Q 046900 53 MGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132 (442)
Q Consensus 53 l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~a 132 (442)
|+.+.++...+.+.+.+...... .....|++..+..+|+++++++++ . +..++++|++++
T Consensus 15 l~~~~~p~~~~~~~~~~~~~~~~----------~~~~~y~~~~~~~~l~~~la~~~~--------~--~~~i~~~~G~~a 74 (357)
T 3lws_A 15 QISGHGKRNVGVLKTAFAAVADE----------MASDQYGTGAIIEPFEQKFADVLG--------M--DDAVFFPSGTMA 74 (357)
T ss_dssp ESSBSSCCBHHHHHHHHTTSCTT----------CBCEETTEETTHHHHHHHHHHHHT--------C--SEEEEESCHHHH
T ss_pred cccCCCCCCHHHHHHHHHHhhcc----------cCcccccCChHHHHHHHHHHHHhC--------C--CcEEEecCcHHH
Confidence 45555555555555555442100 123457766788999999999975 2 333455777889
Q ss_pred HHHHHHhhcCCCC--eEEEcCCCCcChHH---hHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEe
Q 046900 133 NELLTFILADPGD--ALLVPTPYYPGFDR---DLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLIT 207 (442)
Q Consensus 133 i~~~~~~l~~~gd--~Vl~~~p~y~~~~~---~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~ 207 (442)
+.+++.+++.+|| .|+++.++|..... ... ..|++++.++.+ ++.+|+++|+++ .++++++++
T Consensus 75 ~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~---~~~~d~~~l~~~--------~~~~~v~~~ 142 (357)
T 3lws_A 75 QQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKE-LHPIETILVGAA---DRLMTLDEIKAL--------PDIACLLLE 142 (357)
T ss_dssp HHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHH-HSSCEEEECSCT---TSCCCHHHHHTC--------CSCSEEEEE
T ss_pred HHHHHHHHhhcCCCcEEEecccceeeeeccchhhh-ccCcEEEEecCC---CCCcCHHHHhcC--------cCcceEEEE
Confidence 9999999988888 67777766543322 234 379999888843 346899999876 147899999
Q ss_pred CCCCCC-CcCCCHHHHHHHHHHHHhcCcEEEEeccCCcC--CCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 208 NPSNPL-GATIQRSVLEELLDFATRKNIHLVSDEIYSGS--AFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 208 ~P~NPt-G~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~--~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
+|+||| |.+++.+++++|+++|++||++||+||+|... .+.+ .+...+... .+ +++.|+||.++.++
T Consensus 143 ~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~---~~~~~~~~~-----~d--~~~~s~sK~~~~~~ 212 (357)
T 3lws_A 143 LPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYE---KTAAEIAGL-----FD--SIYISFYKGLGGIA 212 (357)
T ss_dssp SSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHT---CCHHHHHTT-----SS--EEEEESSSTTCCSS
T ss_pred cccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcC---CChHHHHhc-----CC--EEEEeccccCCCCc
Confidence 999998 99999999999999999999999999998621 1112 233333321 23 34789999994233
Q ss_pred ceeEEEeecCHHHHHHHHHcccc----CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee-
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSF----TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECL- 358 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~- 358 (442)
. ||+++ ++.+.+.+.+.... .....+.+.++...++. +.+.. +.+.++++++.+.|++. |+++.
T Consensus 213 g--g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~-~~~~~~~~~l~~~L~~~~g~~~~~ 282 (357)
T 3lws_A 213 G--AILAG-PAAFCQTARIWKRRYGGDLISLYPYIVSADYYYEL------RKDRM-GQYYEQAKQLAEQFNALPGVHTTP 282 (357)
T ss_dssp C--EEEEE-CHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH------HTTCH-HHHHHHHHHHHHHHHTSTTEEEES
T ss_pred e--EEEEc-CHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHHHHhCCCCeecc
Confidence 2 99988 56666665543221 11123333333333321 22222 34577788999999987 88874
Q ss_pred cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeec----CCHHHHHHHHHHHHHHH
Q 046900 359 KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFAN----MSEQTLEVALKRIHNFM 434 (442)
Q Consensus 359 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~----~~~e~i~~~l~~l~~~l 434 (442)
.+.+++|+|++++.... .+..++.+.|.++ ||.+.||..|. .+..++|++++. .+.+++++++++|.+++
T Consensus 283 ~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~-Gi~v~~g~~~~-~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 283 EVPVSNMFHLHFDGQAA----DISPKLEQVQEET-GLGFVGYLVDK-DGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp SSCSSSEEEEEEESCHH----HHHHHHHHHHHHH-CEESCSCCEEC-SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred CCCcceEEEEEecCChH----HHHHHHHHHHHhc-CeEEecccccC-CCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 46677799999875311 1246777777666 99999997665 344589999862 37899999999998765
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=249.63 Aligned_cols=356 Identities=10% Similarity=0.056 Sum_probs=224.1
Q ss_pred CCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+|||+.+ .+.++ ++.+.+.+.+.... . .+....+..+++.++++++.+.++ .+
T Consensus 45 d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~------------~-~~~~~~~~~~~~~~la~~l~~~~~----~~ 107 (452)
T 3n5m_A 45 DIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQT------------L-SYFPMSQSHEPAIKLAEKLNEWLG----GE 107 (452)
T ss_dssp ETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTT------------C-CCCCTTSEEHHHHHHHHHHHHHHT----SC
T ss_pred ECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHh------------c-CCcccccCCHHHHHHHHHHHHhCC----CC
Confidence 3445678999877 34443 35555555443221 0 011122445667777777776654 23
Q ss_pred CCcEEEecChHHHHHHHHHhhc-----C---CCCeEEEcCCCCcChHHhHhhhcCc------------EEEEEecCCCCC
Q 046900 120 LNRIVVTAGATAANELLTFILA-----D---PGDALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCDSSNN 179 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~-----~---~gd~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~~~~~ 179 (442)
.+ |++|+|+++++..+++++. . ++|.|++.+|+|.++...+....|. .+..++......
T Consensus 108 ~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (452)
T 3n5m_A 108 YV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYR 186 (452)
T ss_dssp EE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTT
T ss_pred ce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCcccc
Confidence 44 9999999999999999887 5 7899999999998876544321121 233343211111
Q ss_pred CcC-C---------HHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCC
Q 046900 180 FQI-T---------PQALEAAYKEAESKDMRVRGVLITNP-SNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAF 247 (442)
Q Consensus 180 ~~~-d---------~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~ 247 (442)
+.. | +++|++.+++. ...++++|+++.+ +| ||.++ +.+.+++|.++|++||+++|+||+|.++.+
T Consensus 187 ~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~ 263 (452)
T 3n5m_A 187 MPGIERENIYDVECVKEVDRVMTWE--LSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGR 263 (452)
T ss_dssp STTTTTSCGGGCHHHHHHHHHHHHH--CGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred CccCCchhhHHHHHHHHHHHHHHhc--CCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCc
Confidence 111 1 78999998731 1126666676666 79 99766 788899999999999999999999998766
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH--------ccccCCCcHHHHHHH
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR--------MSSFTLISSQTQYLL 318 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~--------~~~~~~~s~~~q~~~ 318 (442)
.+..+ ... . .+...-+.+|||+++ .| +|+||+++ ++.+.+.+.. ....+..+++++.++
T Consensus 264 ~g~~~-~~~-~--------~~~~~di~t~sK~l~-~G~~~ig~~~~-~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa 331 (452)
T 3n5m_A 264 TGKAF-GFM-N--------YDVKPDIITMAKGIT-SAYLPLSATAV-KREIYEAFKGKGEYEFFRHINTFGGNPAACALA 331 (452)
T ss_dssp TSSSS-GGG-G--------TTCCCSEEEECGGGG-TTSSCCEEEEE-EHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHH
T ss_pred ccccc-hhh-h--------cCCCCCEEeeccccc-CCCcceEEEEE-CHHHHHHHhhccCCCCccccCCCCCCHHHHHHH
Confidence 55422 111 1 111112347999998 59 99999999 5667666532 123356788899888
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCceEEEEEecCCccccc---ChhhHHHHHHHHHHcCc
Q 046900 319 ASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAG-IECLKGNAGLFCWMNLSPLLEEQ---TREGELALWDSMLHEVK 394 (442)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~g 394 (442)
.+.++..+. ++.+++.++.....++.+.+.+.++. +....+.| .|+++++....... ......+++..|+++ |
T Consensus 332 ~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-G 408 (452)
T 3n5m_A 332 LKNLEIIEN-ENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKG-LLVGIELVNDKETKEPIDNDKIASVVNACKEK-G 408 (452)
T ss_dssp HHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESS-SCEEEEEEEETTTTEECCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEE-EEEEEEEecCCcccCCCCHHHHHHHHHHHHHC-C
Confidence 887763211 11223333333333344444334443 33444454 46677663211100 011235778888777 9
Q ss_pred EEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHH
Q 046900 395 LNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 395 i~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~ 435 (442)
|.+.|+..|....++++||+++ ..+++++++++++|+++++
T Consensus 409 v~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 409 LIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp EECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred cEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 9999998876555789999865 2389999999999999875
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-29 Score=249.52 Aligned_cols=359 Identities=8% Similarity=0.018 Sum_probs=232.2
Q ss_pred CCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+|||+.+ .+.++ ++.+.+.+.+..... ...|....+..++++++++++.+..+ .+
T Consensus 47 d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~-----------~~~~~~~~~~~~~~~~la~~l~~~~~----~~ 111 (460)
T 3gju_A 47 DNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNL-----------AYYHAYVGHGTEASITLAKMIIDRAP----KG 111 (460)
T ss_dssp ETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHH-----------SCCCCCTTCCCHHHHHHHHHHHHHSC----TT
T ss_pred ECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhc-----------cccccccccCCHHHHHHHHHHHhhCC----CC
Confidence 3445678999876 34443 345554444332110 11233334455777888888877643 46
Q ss_pred CCcEEEecChHHHHHHHHHhhcC--------CCCeEEEcCCCCcChHHhHhhhcC------------cEEEEEecCCC--
Q 046900 120 LNRIVVTAGATAANELLTFILAD--------PGDALLVPTPYYPGFDRDLRWRTG------------IKIVPIHCDSS-- 177 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~--------~gd~Vl~~~p~y~~~~~~~~~~~G------------~~v~~v~~~~~-- 177 (442)
.++|++|+|+++++..+++++.. +++.|++.+|+|.++...+....| ..+..++....
T Consensus 112 ~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (460)
T 3gju_A 112 MSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFR 191 (460)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGG
T ss_pred cCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCcccc
Confidence 78999999999999999998863 569999999999887654432111 12344442210
Q ss_pred -CCCcCC--------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCC
Q 046900 178 -NNFQIT--------PQALEAAYKEAESKDMRVRGVLITNPSNPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAF 247 (442)
Q Consensus 178 -~~~~~d--------~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~ 247 (442)
+++..+ +++|++.+++.. ..++++|++..++|++|. +.+.+.+++|.++|++||+++|+||+|.++..
T Consensus 192 ~~~~g~~~~~~~~~~~~~le~~i~~~~--~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr 269 (460)
T 3gju_A 192 RTDRSMSEEQFSQHCADKLEEMILAEG--PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGR 269 (460)
T ss_dssp CSCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred CCccccChhHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 111233 578888886421 125555555544677776 77888899999999999999999999998765
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH---------ccccCCCcHHHHHH
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR---------MSSFTLISSQTQYL 317 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~---------~~~~~~~s~~~q~~ 317 (442)
.+..+ .. .... .... +.+|||+++ .| +|+||+++ ++.+.+.+.. ....+..++++|.+
T Consensus 270 ~g~~~-~~-~~~~-----~~pd---i~t~sK~l~-gG~~~lg~v~~-~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aa 337 (460)
T 3gju_A 270 LGTMF-GS-DHYG-----IKPD---LITIAKGLT-SAYAPLSGVIV-ADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAA 337 (460)
T ss_dssp TSSSC-HH-HHHT-----CCCS---EEEECGGGT-TTSSCCEEEEE-EHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHH
T ss_pred ccccc-hH-hhcC-----CCCC---eeeeehhhc-CCCCCeEEEEE-CHHHHHHHhcccccccccccCCCCCCCHHHHHH
Confidence 55322 22 2211 0122 347899997 67 89999999 5666666642 22346678899999
Q ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCceEEEEEecCCcccc-c----ChhhHHHHHHHHHH
Q 046900 318 LASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAG-IECLKGNAGLFCWMNLSPLLEE-Q----TREGELALWDSMLH 391 (442)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~-~----~~~~~~~l~~~l~~ 391 (442)
+.+.|+.... ++++++.++..+..++.+.+.+.+++ +....+.| .|+++++...... . ......++++.|++
T Consensus 338 a~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 415 (460)
T 3gju_A 338 GVANLELIDE-MDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDG-MLAAVEFVADKDDRVFFDASQKIGPQVATALAA 415 (460)
T ss_dssp HHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEET-TEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeee-EEEEEEEccCccccccccchHHHHHHHHHHHHH
Confidence 8888873221 22345556666666677767776653 33444444 4777777542110 0 00125678888877
Q ss_pred cCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 392 EVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 392 ~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
+ ||.+.|+. ..+++||++. ..+++++++++++|++++++..+
T Consensus 416 ~-Gv~v~~~~-----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 416 S-GVIGRAMP-----QGDILGFAPPLCLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp T-TEECEECS-----SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred C-CeEEecCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 7 99999965 2478999965 33899999999999999987654
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=243.20 Aligned_cols=290 Identities=10% Similarity=0.083 Sum_probs=212.5
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcC-hHHhHhhhcCcEEEEEec
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPG-FDRDLRWRTGIKIVPIHC 174 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~-~~~~~~~~~G~~v~~v~~ 174 (442)
+..++.+.+.+++.+.++ . .++++|++|+|+++++.+++.++.++ +.+++..|.|.. +...+. ..|++++.++.
T Consensus 40 ~~~~~~~~~~~~la~~~g--~-~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~~~~~~~~~-~~g~~~~~v~~ 114 (362)
T 3ffr_A 40 KFEEVYKTASDNLKTLLE--L-PSNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFSKRFYEFAG-ELGREAYKEEA 114 (362)
T ss_dssp HHHHHHHHHHHHHHHHTT--C-CTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHHHHHHHHHH-HTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhC--C-CCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHHHHHHHHHH-HhCCCeEEEec
Confidence 445666666666666654 1 14678999999999999999999888 656666666662 334555 48999999998
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhc-CcEEEEeccCCcCCCCCCCcc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK-NIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~-~~~vi~De~y~~~~~~~~~~~ 253 (442)
+. ++.+|+++|+ +. .++++|++++|+||||.+++ +++|+++|++| |+++|+|++|+.+... .
T Consensus 115 ~~--~~~~d~~~l~--~~------~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~p~~~li~D~a~~~~~~~----~ 177 (362)
T 3ffr_A 115 AF--GKGFYPADIT--VP------ADAEIICLTHNETSSGVSMP---VEDINTFRDKNKDALIFVDAVSSLPYPK----F 177 (362)
T ss_dssp CT--TCCCCGGGCC--CC------TTCCEEEEESEETTTTEECC---HHHHTTSGGGSTTSEEEEECTTTTTSSC----C
T ss_pred CC--CCCCCHHHHh--cc------CCccEEEEEcCCCCcceeCC---HHHHHHHHHhCCCCEEEEecccccCCcc----c
Confidence 64 4678999988 32 38899999999999999999 77788899999 9999999999853321 1
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHHHccc-----------------------cCC
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARRMSS-----------------------FTL 309 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~~~~-----------------------~~~ 309 (442)
.+ ....+++.|+||.++ .+| +|+++++ +.+.+.+..... .+.
T Consensus 178 ~~-----------~~~d~~~~s~~K~~~~~~G--~g~~~~~-~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 243 (362)
T 3ffr_A 178 DW-----------TKIDSVFFSVQKCFGLPAG--LGVWILN-DRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPET 243 (362)
T ss_dssp CT-----------TSCSEEEEETTSTTCCCSC--CEEEEEE-HHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSC
T ss_pred Ch-----------hHCcEEEEecccccCCCCc--eEEEEEC-HHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCC
Confidence 11 113377899999998 777 5778774 455544443221 445
Q ss_pred CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC----CceEEEEEecCCcccccChhhHHH
Q 046900 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKG----NAGLFCWMNLSPLLEEQTREGELA 384 (442)
Q Consensus 310 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~ 384 (442)
.+...+.++...++... ...+++.+++++++++++.+.|++. |+++..+ .++.++|+.++. +..+
T Consensus 244 ~~~~~~~~~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 313 (362)
T 3ffr_A 244 PNAMNIFLLGKVTGDML--QISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM--------LPGE 313 (362)
T ss_dssp CCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS--------CHHH
T ss_pred chHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC--------CHHH
Confidence 56666666666654211 1225677888899999999999998 8887652 345678888875 2678
Q ss_pred HHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHH
Q 046900 385 LWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 385 l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l 434 (442)
+.+.|.++ ||.+.+|..+ ..++++||+++ ..+++++++++++|++++
T Consensus 314 ~~~~l~~~-gi~~~~g~~~--~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 314 INKILEPF-DMAVGAGYGS--KKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp HHHHHGGG-TEEEEECSGG--GTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHC-CeEEecCccc--cCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 88998888 9999998544 34689999997 337899999999998764
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=251.60 Aligned_cols=303 Identities=14% Similarity=0.135 Sum_probs=223.8
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh----cCCCC-----eEEEcCCCCcChHHhHhhh
Q 046900 94 YHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL----ADPGD-----ALLVPTPYYPGFDRDLRWR 164 (442)
Q Consensus 94 ~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l----~~~gd-----~Vl~~~p~y~~~~~~~~~~ 164 (442)
.+|..++++++++++.+.+| ++. .+++++|+++++..++.++ .++|| +|+++.|+|+.+...+..
T Consensus 102 ~~g~~~l~~~l~~~la~~~g----~~~-~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~- 175 (474)
T 1wyu_B 102 AQGALRLMWELGEYLKALTG----MDA-ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASM- 175 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHT----CSE-EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHH-
T ss_pred ChHHHHHHHHHHHHHHHHHC----CCc-eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHH-
Confidence 56888999999999998877 232 4778899999998755443 35887 999999999999988885
Q ss_pred cCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc
Q 046900 165 TGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG 244 (442)
Q Consensus 165 ~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~ 244 (442)
.|++++.+++++ ++.+|+++|++++.+ ++++|++++| ||||.+. +.+++|+++|+++|+++|+||+|+.
T Consensus 176 ~G~~vv~v~~~~--~~~~d~~~L~~~i~~------~t~~v~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~ 244 (474)
T 1wyu_B 176 AGYQVREIPSGP--EGEVDLEALKRELGP------HVAALMLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLN 244 (474)
T ss_dssp TTCEEEEECBCT--TSSBCHHHHHHHCST------TEEEEEECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGG
T ss_pred CCCEEEEecCCC--CCCcCHHHHHHhhCC------CceEEEEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhh
Confidence 899999999875 467999999998864 7899999998 6899883 3489999999999999999999987
Q ss_pred CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC-C---ceeEEEeecCHHHHHHHH-Hcc--------------
Q 046900 245 SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP-G---FRVGTIYSYNDKVVTTAR-RMS-------------- 305 (442)
Q Consensus 245 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~-G---~RiG~i~~~~~~~~~~~~-~~~-------------- 305 (442)
..++ ..+...+ +..+++.|+||.|+.| | +|+||+++++ .+.+.+. ...
T Consensus 245 ~~~g---~~~~~~~---------g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~-~l~~~l~~~~~~~~g~~~~~~~~~~ 311 (474)
T 1wyu_B 245 AIMG---WARPGDM---------GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKA-HLAPYLPVPLVERGEEGFYLDFDRP 311 (474)
T ss_dssp GTTT---TCCHHHH---------TCSEEECCTTTTTCCCCTTSCCCCCCEEECG-GGGGGCCSCEEEECSSCEEEECCCT
T ss_pred hhcc---CCCcccC---------CCcEEEEeCccccccCCCCCCCCeEEEEEcH-HHHHhCCCCeeeccCCeeEecccCc
Confidence 6542 1233222 3347788999999766 4 5999999954 4433332 100
Q ss_pred ------ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEE-EEEecCCcccccC
Q 046900 306 ------SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLF-CWMNLSPLLEEQT 378 (442)
Q Consensus 306 ------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~-~~~~~~~~~~~~~ 378 (442)
..+..+.+.+.++..++.... .+++++..+.+.++++++.+.|++.|+++..+...+. +|++++...
T Consensus 312 ~~~~~~~~~~~~~~~~~aa~~~l~~~g--~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~---- 385 (474)
T 1wyu_B 312 KSIGRVRSFYGNFLALVRAWAYIRTLG--LEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPPEGF---- 385 (474)
T ss_dssp TCCCCSSSTTSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBCSTTC----
T ss_pred ccCcccccCcCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCCCcceEEEEEcCCCC----
Confidence 112245666777776665322 3457778888999999999999888877633332221 566663211
Q ss_pred hhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHHHHH
Q 046900 379 REGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 379 ~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~ 436 (442)
+..++++.|+++ ||.+ |+..|+....+++||+++. .+++++++++++|++++++
T Consensus 386 --~~~~l~~~L~~~-Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 386 --RALDLAKGLLEL-GFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp --CHHHHHHHHHHT-TCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred --CHHHHHHHHHHC-Cccc-cccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 367888999877 9985 6666643335789999973 3789999999999988753
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=254.79 Aligned_cols=353 Identities=14% Similarity=0.078 Sum_probs=219.6
Q ss_pred CCCCceeeeecccc--cc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC
Q 046900 45 TNPSGVIQMGLAEN--QV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120 (442)
Q Consensus 45 ~~~~~~i~l~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 120 (442)
.....+|||+.+.+ ++ +++.+.+.+.+.... ...|....|..++++++++++.+.++ ...
T Consensus 40 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~------------~~~~~~~~~~~~~~~~l~~~la~~~~----~~~ 103 (439)
T 3dxv_A 40 ENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAAN------------PAGATILSASNAPAVTLAERLLASFP----GEG 103 (439)
T ss_dssp TTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHS------------CSCSCSSSSEEHHHHHHHHHHHHTTT----CTT
T ss_pred CCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHh------------ccCccccccCCHHHHHHHHHHHHhCC----CCC
Confidence 34567899988765 33 235555544433211 12344345667888888888887653 234
Q ss_pred -CcEEEecChHHHHHHHHHhh--cCCCCeEEEcCCCCcChHHhHhhhcCcEE--------------EEEecCCCCCCcC-
Q 046900 121 -NRIVVTAGATAANELLTFIL--ADPGDALLVPTPYYPGFDRDLRWRTGIKI--------------VPIHCDSSNNFQI- 182 (442)
Q Consensus 121 -~~i~~t~G~~~ai~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v--------------~~v~~~~~~~~~~- 182 (442)
++|++|+|+++++..+++++ ..+++.|++.+|+|.++...+....|... ..+|.+. .+..
T Consensus 104 ~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 181 (439)
T 3dxv_A 104 THKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRP--YRNDP 181 (439)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSC--BTTBT
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCc--ccccc
Confidence 79999999999999999885 33667888889998766544332233221 2222221 1111
Q ss_pred ----CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCC-HHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHH
Q 046900 183 ----TPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQ-RSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAE 257 (442)
Q Consensus 183 ----d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~-~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~ 257 (442)
|+++|++++++. ...++++|++++++|++|.+.+ .+.+++|.++|++|++++|+||+|.++...+..+ .. +
T Consensus 182 ~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~-~~-~ 257 (439)
T 3dxv_A 182 TGDAILTLLTEKLAAV--PAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLH-CF-E 257 (439)
T ss_dssp TSHHHHHHHHHHHHTS--CTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSS-GG-G
T ss_pred cHHHHHHHHHHHHHhc--CCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh-HH-H
Confidence 689999988411 1236677777767788888665 4459999999999999999999999865544321 11 1
Q ss_pred HHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc--cccCCCcHHHHHHHHHHhcCchhHHHHHHHH
Q 046900 258 ILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM--SSFTLISSQTQYLLASMLSNKKFTENYIKTN 335 (442)
Q Consensus 258 ~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 335 (442)
... ....+ .||||+++ +|+|+||+++ ++.+.+.+... ...+ .+++++.++.++++.... +++.++.
T Consensus 258 ~~~-----~~~di---~s~sK~~~-~G~riG~~~~-~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~-~~~~~~~ 325 (439)
T 3dxv_A 258 HEG-----FVPDI---LVLGKGLG-GGLPLSAVIA-PAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDR-DDLPAMA 325 (439)
T ss_dssp GTT-----CCCSE---EEECGGGG-TTSCCEEEEE-EHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH-TTHHHHH
T ss_pred hcC-----CCCCE---EEEcchhc-CCcceEEEEE-CHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh-cCHHHHH
Confidence 110 11222 39999999 7999999999 56666555432 2335 788888888877763221 1122222
Q ss_pred HHHHHHHHHHHHHHHHhCC-CeeecCCceEEEEEecCCccc--ccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEE
Q 046900 336 RERLQKRYQMIIEGLRSAG-IECLKGNAGLFCWMNLSPLLE--EQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFR 412 (442)
Q Consensus 336 ~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iR 412 (442)
++..+..++.+.+.+...+ +....+. |.|+|+++..... ........++++.|+++ ||.+.||..+ .+++|
T Consensus 326 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iR 399 (439)
T 3dxv_A 326 ERKGRLLRDGLSELAKRHPLIGDIRGR-GLACGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGMN----GNVLE 399 (439)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEESTT----SCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCCC----CCEEE
Confidence 3322333333333333343 3333444 5577777621100 01122467788888888 9999998532 47899
Q ss_pred EEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 413 VCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 413 ls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
|+++ ..+++++++++++|++++++.
T Consensus 400 i~~~~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 400 FTPPLTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9865 338999999999999998865
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-29 Score=248.56 Aligned_cols=322 Identities=15% Similarity=0.219 Sum_probs=219.5
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC----CCCe---EEEcCCCCcChHHhHh
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD----PGDA---LLVPTPYYPGFDRDLR 162 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~----~gd~---Vl~~~p~y~~~~~~~~ 162 (442)
.|.+..+..+||++++++++ .++|++|+|+++++.+++.++++ +||. |+++.+.|..+...+.
T Consensus 71 ~y~~~~~~~~l~~~la~~~~----------~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~ 140 (467)
T 1ax4_A 71 AYAGSRNYYDLKDKAKELFN----------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE 140 (467)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHcC----------CCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHh
Confidence 57666788999999999974 36899999999999999999988 9998 9998777777777777
Q ss_pred hhcCcEEEEEecCC----C----CCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC-CcCCCHHHHHHHHHHHHhcC
Q 046900 163 WRTGIKIVPIHCDS----S----NNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPL-GATIQRSVLEELLDFATRKN 233 (442)
Q Consensus 163 ~~~G~~v~~v~~~~----~----~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPt-G~~~~~~~l~~l~~~~~~~~ 233 (442)
. .|++++.++.+. . .++.+|++.|++++++.. ..++++|++++|+||| |.+++.+++++|+++|++||
T Consensus 141 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~g 217 (467)
T 1ax4_A 141 L-NGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 217 (467)
T ss_dssp H-TTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred c-cCCceecccccccccccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcC
Confidence 4 899988776532 1 134689999999998531 1268999999999999 89999999999999999999
Q ss_pred cEEEEeccCCc--C--------CCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC-CceeEEEeecCH-HHHHHH
Q 046900 234 IHLVSDEIYSG--S--------AFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP-GFRVGTIYSYND-KVVTTA 301 (442)
Q Consensus 234 ~~vi~De~y~~--~--------~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~-G~RiG~i~~~~~-~~~~~~ 301 (442)
++||+||++.. . .+.+ .++.++.++.. ...+ +++.|+||.+|++ | ||++++++ .+.+.+
T Consensus 218 i~li~De~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~d--~~~~s~sK~~g~~~G---g~~~~~d~~~l~~~~ 288 (467)
T 1ax4_A 218 IFVVMDSARFCENAYFIKARDPKYKN---ATIKEVIFDMY-KYAD--ALTMSAKKDPLLNIG---GLVAIRDNEEIFTLA 288 (467)
T ss_dssp CCEEEECTTHHHHHHHHHHHCGGGTT---CCHHHHHHHHG-GGCS--EEEEETTSTTCCSSC---EEEEESSCHHHHHHH
T ss_pred CEEEEEchhhhhcchhccccccccCC---Cchhhhhhhhc-cccc--eEEEeccccCCCCcc---eEEEeCCHHHHHHHH
Confidence 99999998542 0 1222 23334331100 0012 4568999999866 4 77777534 555544
Q ss_pred HHcc-------ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcc
Q 046900 302 RRMS-------SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLL 374 (442)
Q Consensus 302 ~~~~-------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~ 374 (442)
.... .+...+...+.++...+..... .+.+ +...++++++.+.|.+.|+++..+.+++++|+++....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~----~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 363 (467)
T 1ax4_A 289 RQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE-EEYL----HYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLV 363 (467)
T ss_dssp HHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC-HHHH----HHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTC
T ss_pred HhhccccccccccCCccchHHHHHHHHHHHhhh-hhHH----HHHHHHHHHHHHHHHhCCCCcccCCCceEEEEehhhhc
Confidence 3321 1122333333323323321100 1122 22235667888888777888878888999999843210
Q ss_pred cc--cChhhHHHHHHHHHHcCcEEEeC-CCCC-CC---------CCCCEEEEEeec--CCHHHHHHHHHHHHHHHHHHH
Q 046900 375 EE--QTREGELALWDSMLHEVKLNISP-GSSC-HC---------SEPGWFRVCFAN--MSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 375 ~~--~~~~~~~~l~~~l~~~~gi~v~p-g~~f-~~---------~~~~~iRls~~~--~~~e~i~~~l~~l~~~l~~~~ 438 (442)
.. ....+..+++..|++++||.+.| |+.| +. ...+++||+++. .+++++++++++|++++++..
T Consensus 364 ~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 364 PQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 442 (467)
T ss_dssp TTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred cccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence 00 00013567888884555999999 6532 11 013789999982 489999999999999987743
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-29 Score=253.07 Aligned_cols=310 Identities=15% Similarity=0.140 Sum_probs=229.7
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcE--EEecChHHHHHHHHHhhcCCC--------CeEEEcCCCCcChHH
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRI--VVTAGATAANELLTFILADPG--------DALLVPTPYYPGFDR 159 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i--~~t~G~~~ai~~~~~~l~~~g--------d~Vl~~~p~y~~~~~ 159 (442)
.|..+.+...+++++++++.+.+| .+.+++++ ++|+|+++++..++.++.++| |.|+++.|+|..+..
T Consensus 130 ~~~~~p~~~~le~~l~~~la~~~g--~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~ 207 (514)
T 3mad_A 130 HPDLWPSTAKFEAEVVAMTAHMLG--GDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDK 207 (514)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHTT--GGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHH
T ss_pred ccccChHHHHHHHHHHHHHHHHcC--CCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHH
Confidence 344455778999999999998876 33334788 999999999999999998776 999999999999999
Q ss_pred hHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEe
Q 046900 160 DLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSD 239 (442)
Q Consensus 160 ~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~D 239 (442)
.++. .|++++.+|+++ ++.+|+++|++++++ ++++|++++|+||||.+.+ +++|.++|++||+++|+|
T Consensus 208 ~~~~-~G~~v~~v~~~~--~~~~d~~~Le~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livD 275 (514)
T 3mad_A 208 AAQY-FGIKLVRTPLDA--DYRADVAAMREAITP------NTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVD 275 (514)
T ss_dssp HHHH-HTCEEEEECBCT--TSCBCHHHHHHHCCT------TEEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEE
T ss_pred HHHH-cCCeeEEeeeCC--CCCCCHHHHHHHhcc------CCEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEe
Confidence 9985 899999999876 577999999999865 7899999999999999988 788889999999999999
Q ss_pred ccCCcCCCC-----CCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc--------
Q 046900 240 EIYSGSAFS-----SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS-------- 306 (442)
Q Consensus 240 e~y~~~~~~-----~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~-------- 306 (442)
|+|+.+.+. +.....+. . ...+..+++.|++|.++ +|.++||++++++.+.........
T Consensus 276 ea~~~~~~~~~~~~g~~~~~~~-~------~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (514)
T 3mad_A 276 ACLGGFILPWAERLGYPVPPFD-F------RLEGVTSVSADTHKYGY-GAKGTSVILYRRPDLLHYQYFIAADWPGGLYF 347 (514)
T ss_dssp CTTTTTTHHHHHHTTCCCCCCS-T------TSTTCCEEEECTTTTTC-CCSSCEEEEESSHHHHTTTCEEESSCTTCSEE
T ss_pred cccccccchhHHhcCCCCCccc-c------cCCCCcEEEECchhccC-CCCCeEEEEEeCHHHhccccccccccCCCccc
Confidence 999976541 11000100 0 11245677899999874 788999999977655432111110
Q ss_pred ----cCCCc---HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEEEEecCCcccccC
Q 046900 307 ----FTLIS---SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSPLLEEQT 378 (442)
Q Consensus 307 ----~~~~s---~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~ 378 (442)
.+..+ ...+.++...+. ...+++..+++.++++++.+.|++. |+++..+..+ ++|+..+..
T Consensus 348 ~~~~~gs~~~~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~----- 416 (514)
T 3mad_A 348 SPTFAGSRPGALSATAWAAMLSLG-----EEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDEL----- 416 (514)
T ss_dssp ESSSCSSCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEECSSS-----
T ss_pred CCccCCCCchHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeCCCC-----
Confidence 01111 223333333332 2345677788888999999999987 8888776665 677765432
Q ss_pred hhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeec--CCHHHHHHHHHHHHHHHHHHHhh
Q 046900 379 REGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFAN--MSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 379 ~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
+..++.+.|.++ ||.+ +|..| ++++|+++.. .+++++++++++|++++++..+.
T Consensus 417 --~~~~l~~~L~~~-Gi~v-~g~~~----~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~ 472 (514)
T 3mad_A 417 --NIYQVMEEMAGR-GWRL-NGLHR----PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAH 472 (514)
T ss_dssp --CHHHHHHHHHTT-TCBC-EEETT----TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHhc-CCEe-ccCCC----CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 256788888777 9988 55443 4679999872 25689999999999999877643
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-29 Score=242.46 Aligned_cols=292 Identities=13% Similarity=0.175 Sum_probs=212.9
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEE
Q 046900 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVP 171 (442)
Q Consensus 93 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~ 171 (442)
+..+..++|+++|++++ .+++++|+|+++++.+++.++ +++||.|+++.|+|+.+...++. .|++++.
T Consensus 37 ~~~~~~~l~~~la~~~~----------~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~g~~~~~ 105 (393)
T 1mdo_A 37 TGPKNQELEAAFCRLTG----------NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVL-LGANPVM 105 (393)
T ss_dssp SSHHHHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHH-TTCEEEE
T ss_pred CChHHHHHHHHHHHHhC----------CCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHHH-CCCEEEE
Confidence 44688999999999985 248999999999999999999 89999999999999999988884 8999999
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcC-CCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGS-AFSSS 250 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~-~~~~~ 250 (442)
++++++ ++.+|++.|++.+++ ++++|+++ ||||.+.+ +++|.++|+++|+++|+||+|+.. .+.+.
T Consensus 106 v~~~~~-~~~~d~~~l~~~l~~------~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~ 172 (393)
T 1mdo_A 106 VDVDRD-TLMVTPEHIEAAITP------QTKAIIPV---HYAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYKGR 172 (393)
T ss_dssp ECBCTT-TCCBCHHHHHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTE
T ss_pred EeccCC-cCCCCHHHHHHhcCC------CceEEEEe---CCCCCcCC---HHHHHHHHHHcCCeEEEECccccCCeECCe
Confidence 998753 578999999998864 67887765 48999877 788889999999999999999963 33321
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCc--ccCCCCCceeEEEeecCHHHHHHHHHccccC--------------------
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLS--KDLGLPGFRVGTIYSYNDKVVTTARRMSSFT-------------------- 308 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~S--K~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~-------------------- 308 (442)
... . ..+++.|+| |.+ +|.|+||++++++.+.+.++.....+
T Consensus 173 ~~~-------------~-~d~~~~S~~k~K~l--~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (393)
T 1mdo_A 173 HIG-------------A-RGTAIFSFHAIKNI--TCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVL 236 (393)
T ss_dssp ETT-------------S-SSEEEEECCTTSSS--CSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEES
T ss_pred ecC-------------C-CCeEEEeCCCCCcc--ccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhccccccccccc
Confidence 110 0 458889999 655 55699999996567766655432211
Q ss_pred ------CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec-C-----CceEEEEEecCC---c
Q 046900 309 ------LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK-G-----NAGLFCWMNLSP---L 373 (442)
Q Consensus 309 ------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~-----~~g~~~~~~~~~---~ 373 (442)
.++.+...++...+. .+++..++.++.++++.+.|.+.++++.. + .+++++|+.++. .
T Consensus 237 ~~g~~~~~~~~~~a~~~~~l~-------~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 309 (393)
T 1mdo_A 237 APGYKYNLPDLNAAIALAQLQ-------KLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCG 309 (393)
T ss_dssp SCCCBCCCCHHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHS
T ss_pred ccCccCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEEEecccccc
Confidence 123333333333332 13344455556778888899887766542 2 355678998873 1
Q ss_pred ccccChhhHHHHHHHHHHcCcEEEeCCCCCC--------------CC-----CCCEEEEEee-cCCHHHHHHHHHHHHHH
Q 046900 374 LEEQTREGELALWDSMLHEVKLNISPGSSCH--------------CS-----EPGWFRVCFA-NMSEQTLEVALKRIHNF 433 (442)
Q Consensus 374 ~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~--------------~~-----~~~~iRls~~-~~~~e~i~~~l~~l~~~ 433 (442)
. +..++.+.|.++ ||.+.+|..+. .. ...++||++. ..+++++++++++|+++
T Consensus 310 ~------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~ 382 (393)
T 1mdo_A 310 I------TRDALMASLKTK-GIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQI 382 (393)
T ss_dssp S------CHHHHHHHHHHT-TBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred c------CHHHHHHHHHhC-CCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 1 256788888776 99999986441 00 1347999997 34899999999999998
Q ss_pred HHHHH
Q 046900 434 MQKRE 438 (442)
Q Consensus 434 l~~~~ 438 (442)
++.++
T Consensus 383 ~~~~~ 387 (393)
T 1mdo_A 383 AGQGS 387 (393)
T ss_dssp HC---
T ss_pred HhcCC
Confidence 87654
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=247.23 Aligned_cols=298 Identities=16% Similarity=0.227 Sum_probs=216.4
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcE
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIK 168 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~ 168 (442)
.|.+..+..++|++++++++ . .+.|++++| ++++.+++.++ +++||+|+++.|+|+.+...+.. .|++
T Consensus 33 ~~~~~~~~~~l~~~la~~~~--------~-~~~i~~~sG-t~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~-~g~~ 101 (388)
T 1b9h_A 33 WRMGGDEVNSFEREFAAHHG--------A-AHALAVTNG-THALELALQVMGVGPGTEVIVPAFTFISSSQAAQR-LGAV 101 (388)
T ss_dssp BTTTCSHHHHHHHHHHHHTT--------C-SEEEEESCH-HHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHH-TTCE
T ss_pred eecCCHHHHHHHHHHHHHhC--------C-CeEEEeCCH-HHHHHHHHHHcCCCCcCEEEECCCccHHHHHHHHH-cCCE
Confidence 35555688999999999985 2 256777777 89999999999 89999999999999999998884 8999
Q ss_pred EEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcC-CC
Q 046900 169 IVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGS-AF 247 (442)
Q Consensus 169 v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~-~~ 247 (442)
++.++++++ +|.+|++.|++.+++ ++++|+ |+||||.+.+ +++|+++|+++|++||+|++|+.. .+
T Consensus 102 ~~~v~~~~~-~~~~d~~~l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~la~~~~~~li~D~a~~~g~~~ 168 (388)
T 1b9h_A 102 TVPVDVDAA-TYNLDPEAVAAAVTP------RTKVIM---PVHMAGLMAD---MDALAKISADTGVPLLQDAAHAHGARW 168 (388)
T ss_dssp EEEECBCTT-TCCBCHHHHHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEE
T ss_pred EEEEecCCC-cCCCCHHHHHHhcCc------CceEEE---EeCCccCcCC---HHHHHHHHHHcCCEEEEecchhcCCcc
Confidence 999999753 478999999998854 677665 9999999987 788888899999999999999863 23
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHH--HHHHHHcccc--------------CC--
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKV--VTTARRMSSF--------------TL-- 309 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~--~~~~~~~~~~--------------~~-- 309 (442)
.+. ++ .. .+ ++++.||||..+++|.|+||++++++.+ .+.+...... +.
T Consensus 169 ~~~---~~----~~-----~~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 235 (388)
T 1b9h_A 169 QGK---RV----GE-----LD-SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNM 235 (388)
T ss_dssp TTE---EG----GG-----SS-SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBC
T ss_pred CCe---ec----cc-----cc-ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccC
Confidence 221 11 11 12 4778999977666778999999966545 4444322211 11
Q ss_pred -CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec------CCceEEEEEecCCcccccChhh
Q 046900 310 -ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK------GNAGLFCWMNLSPLLEEQTREG 381 (442)
Q Consensus 310 -~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~------~~~g~~~~~~~~~~~~~~~~~~ 381 (442)
.+.+...++...+ +++++..+.++++++++.+.|++. |+++.. +.+++++|+.++... ..+
T Consensus 236 ~~~~~~~a~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 304 (388)
T 1b9h_A 236 RLNEFSASVLRAQL-------ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT----EER 304 (388)
T ss_dssp BCBHHHHHHHHHHH-------TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC----HHH
T ss_pred CcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcC----ccc
Confidence 2333222222222 234556777888899999999887 787765 355789999987531 013
Q ss_pred HHHHHHHHHHcCcEEEeCCCCCC----------CCC-----------------CCEEEEEee-cC-CHHHHHHHHHHHHH
Q 046900 382 ELALWDSMLHEVKLNISPGSSCH----------CSE-----------------PGWFRVCFA-NM-SEQTLEVALKRIHN 432 (442)
Q Consensus 382 ~~~l~~~l~~~~gi~v~pg~~f~----------~~~-----------------~~~iRls~~-~~-~~e~i~~~l~~l~~ 432 (442)
..++.+.|.++ ||.+.++.... ... .+.+||++. .+ ++++++++++.|++
T Consensus 305 ~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~ 383 (388)
T 1b9h_A 305 RNALVDRLVEA-GLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIAD 383 (388)
T ss_dssp HHHHHHHHHHT-TCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHH
Confidence 56788888776 99998864310 000 135999986 56 78999999999999
Q ss_pred HHHH
Q 046900 433 FMQK 436 (442)
Q Consensus 433 ~l~~ 436 (442)
++++
T Consensus 384 ~~~~ 387 (388)
T 1b9h_A 384 AVAR 387 (388)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8754
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-28 Score=239.51 Aligned_cols=283 Identities=17% Similarity=0.162 Sum_probs=195.9
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhH----hhhcCcEEE
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDL----RWRTGIKIV 170 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~~G~~v~ 170 (442)
....++++.++++++ .+ ++++++++++++..++.+++++||+|+++.|+|+.+...+ . ..|++++
T Consensus 64 ~~~~~l~~~la~~~g--------~~--~~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-~~g~~~~ 132 (398)
T 2rfv_A 64 PTTDALEKKLAVLER--------GE--AGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMP-KFGINVR 132 (398)
T ss_dssp HHHHHHHHHHHHHHT--------CS--EEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHH-HTTCEEE
T ss_pred hHHHHHHHHHHHHhC--------CC--cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHH-HcCCEEE
Confidence 456677777777764 22 5556666679999999999999999999999999887765 5 4899999
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
.++.+ |++.+++.+++ ++++|++++|+||||.+++ +++|+++|++||+++|+||+|+.+.+..
T Consensus 133 ~v~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~- 195 (398)
T 2rfv_A 133 FVDAA-------KPEEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ- 195 (398)
T ss_dssp EECTT-------SHHHHHHHCCT------TEEEEEEESSBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred EeCCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 99863 78999988764 7899999999999999998 8889999999999999999999765531
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee-EEEeecCHHHHHHHHHccc---cCCCcHHHHHHHHHHhcCch
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV-GTIYSYNDKVVTTARRMSS---FTLISSQTQYLLASMLSNKK 326 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri-G~i~~~~~~~~~~~~~~~~---~~~~s~~~q~~~~~~l~~~~ 326 (442)
+. . .+..+++.|+||.++.+|+|+ ||++++++.+.+.++.... .+..+++.|.++.+.++..
T Consensus 196 ---~~-~---------~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 261 (398)
T 2rfv_A 196 ---PL-Q---------LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTL- 261 (398)
T ss_dssp ---GG-G---------GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTH-
T ss_pred ---ch-h---------hCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhH-
Confidence 11 1 145688999999998899998 9999954443324443222 2356788888888888642
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC---------------CCeeecC----CceEEEEEecCCcccccChhhHHHHHH
Q 046900 327 FTENYIKTNRERLQKRYQMIIEGLRSA---------------GIECLKG----NAGLFCWMNLSPLLEEQTREGELALWD 387 (442)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~l~~~L~~~---------------g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~l~~ 387 (442)
..++ +.+.++.+.+.+.|++. ++++..+ .++ +++++++... .+...+.+
T Consensus 262 --~~~~----~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~-~~~~~~~~~~-----~~~~~l~~ 329 (398)
T 2rfv_A 262 --GIRM----ERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGG-IISFEIAGGL-----EAGRRMIN 329 (398)
T ss_dssp --HHHH----HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCS-EEEEEETTHH-----HHHHHHHT
T ss_pred --HHHH----HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCce-EEEEEEcCCH-----HHHHHHHH
Confidence 2222 33444555666666553 2222222 355 5566876420 12333433
Q ss_pred HHHHcCcEEEeCCCCCC---------------------CCCCCEEEEEeecC-CHHHHHHHHHHHHH
Q 046900 388 SMLHEVKLNISPGSSCH---------------------CSEPGWFRVCFANM-SEQTLEVALKRIHN 432 (442)
Q Consensus 388 ~l~~~~gi~v~pg~~f~---------------------~~~~~~iRls~~~~-~~e~i~~~l~~l~~ 432 (442)
.+.. .|+.+.+|+.|. +..++++|||++.. ++++++++++.|++
T Consensus 330 ~~~~-~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 330 SVEL-CLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp TCSS-SEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred hCCc-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 3322 288888887652 01257999999842 45556655555543
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-29 Score=246.45 Aligned_cols=339 Identities=12% Similarity=0.065 Sum_probs=218.7
Q ss_pred CCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCc
Q 046900 47 PSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR 122 (442)
Q Consensus 47 ~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~ 122 (442)
...+||++.+. +++ +++.+.+.+.+....... .....|+. ....++++++++++ + +++++
T Consensus 42 g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~-------~~~~~~~~-~~~~~l~~~la~~~----~----~~~~~ 105 (429)
T 1s0a_A 42 GRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSH-------VMFGGITH-APAIELCRKLVAMT----P----QPLEC 105 (429)
T ss_dssp SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSC-------CCCSSEEC-HHHHHHHHHHHHHS----C----TTCCE
T ss_pred CCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccc-------ccccccCC-HHHHHHHHHHHHhC----C----CCCCE
Confidence 45678887775 344 234455444433211000 00113432 12345555555553 2 46899
Q ss_pred EEEecChHHHHHHHHHhhc---C----CCCeEEEcCCCCcChHHhHhhhc---------------CcEEEEEecCC-CCC
Q 046900 123 IVVTAGATAANELLTFILA---D----PGDALLVPTPYYPGFDRDLRWRT---------------GIKIVPIHCDS-SNN 179 (442)
Q Consensus 123 i~~t~G~~~ai~~~~~~l~---~----~gd~Vl~~~p~y~~~~~~~~~~~---------------G~~v~~v~~~~-~~~ 179 (442)
|++|+|+++++..+++++. + +||.|++.+|+|+++...+.... ++..++++... ++.
T Consensus 106 v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (429)
T 1s0a_A 106 VFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGE 185 (429)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CC
T ss_pred EEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCccccccc
Confidence 9999999999999988653 2 68999999999987654322111 34444443211 123
Q ss_pred C-cCCHHHHHHHHHHHHhcCCceeEEEEeCC--CCCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccH
Q 046900 180 F-QITPQALEAAYKEAESKDMRVRGVLITNP--SNPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSI 255 (442)
Q Consensus 180 ~-~~d~~~l~~~l~~~~~~~~~~~~v~l~~P--~NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~ 255 (442)
| .+|++.|++.+++. ..+++ +++++| +||||. +.+.+.+++|+++|++||+++|+||+|.++.+.+..+ .+
T Consensus 186 ~~~~d~~~l~~~l~~~---~~~~~-~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~-~~ 260 (429)
T 1s0a_A 186 WDERDMVGFARLMAAH---RHEIA-AVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF-AC 260 (429)
T ss_dssp CCGGGGHHHHHHHHHH---TTTEE-EEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GG
T ss_pred chHHHHHHHHHHHHhC---CCCEE-EEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHH-Hh
Confidence 4 47899999998752 12454 556677 589996 5578889999999999999999999999865544321 11
Q ss_pred HHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHc-------cccCCCcHHHHHHHHHHhcCchh
Q 046900 256 AEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRM-------SSFTLISSQTQYLLASMLSNKKF 327 (442)
Q Consensus 256 ~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~-------~~~~~~s~~~q~~~~~~l~~~~~ 327 (442)
... . ...++ .||||.++ +| +|+||+++ ++.+.+.+... ...+..++++|.++.++++...
T Consensus 261 ~~~-~-----~~~d~---~t~sK~l~-~G~~~iG~~~~-~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~- 328 (429)
T 1s0a_A 261 EHA-E-----IAPDI---LCLGKALT-GGTMTLSATLT-TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILE- 328 (429)
T ss_dssp GGG-T-----CCCSE---EEECGGGG-TSSSCCEEEEE-CHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHH-
T ss_pred hhc-C-----CCCCE---EEeccccc-CCCccceEEEe-CHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHH-
Confidence 111 1 01222 37999998 79 99999999 45666666542 2235567888888877775211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCC
Q 046900 328 TENYIKTNRERLQKRYQMIIEGLRSA----GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSC 403 (442)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f 403 (442)
+ ....+.++++++++.+.|++. ++....+.+ .|+|++++... +..++++.|+++ ||.+.|+
T Consensus 329 --~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~~~~~~~~------~~~~l~~~l~~~-Gi~v~~~--- 393 (429)
T 1s0a_A 329 --S--GDWQQQVADIEVQLREQLAPARDAEMVADVRVLG-AIGVVETTHPV------NMAALQKFFVEQ-GVWIRPF--- 393 (429)
T ss_dssp --T--CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEET-TEEEEEESSCB------CHHHHHHHHHHT-TEECCCB---
T ss_pred --h--CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEee-EEEEEEECCcc------cHHHHHHHHHHC-CCEEecc---
Confidence 1 123455666777888888764 343344444 58899887532 256788888766 9999883
Q ss_pred CCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 404 HCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 404 ~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.+++||+++ ..+++++++++++|++++++.
T Consensus 394 ----~~~iRis~~~~~t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 394 ----GKLIYLMPPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp ----TTEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred ----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 268999965 338999999999999987653
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=245.33 Aligned_cols=288 Identities=12% Similarity=0.116 Sum_probs=201.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecCh-HHHHHHHHHhhcCC---CCeEEEcCCCCcChHHhHhhhcCcEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGA-TAANELLTFILADP---GDALLVPTPYYPGFDRDLRWRTGIKIVP 171 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~-~~ai~~~~~~l~~~---gd~Vl~~~p~y~~~~~~~~~~~G~~v~~ 171 (442)
+..++.+++.+++.+.+| .. ++++|++|+|+ ++++.+++.+++.+ ||.|+++.++|..+ ..++ ..| +++.
T Consensus 45 ~~~~~~~~l~~~la~~~g--~~-~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-~~~~-~~g-~~~~ 118 (360)
T 1w23_A 45 SYEEVHEQAQNLLRELLQ--IP-NDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-KEAK-LLG-ETHI 118 (360)
T ss_dssp HHHHHHHHHHHHHHHHHT--CC-TTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-HHHH-TTS-EEEE
T ss_pred HHHHHHHHHHHHHHHHhC--CC-CCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHH-HHHH-HhC-CeEE
Confidence 444455555555555544 21 35799999999 99999999988765 56777777777543 3345 379 9999
Q ss_pred EecCCCCCCcCCHHHHHH-HHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEA-AYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~-~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
+++++++++ +|++++++ .+++ ++|+|++++|+||||.+++ ++ +++||++||+||+|+.+..
T Consensus 119 v~~~~~~~~-~d~~~l~~~~i~~------~~k~v~~~~~~nptG~~~~--~i------~~~~~~~li~D~a~~~~~~--- 180 (360)
T 1w23_A 119 AASTKANSY-QSIPDFSEFQLNE------NDAYLHITSNNTIYGTQYQ--NF------PEINHAPLIADMSSDILSR--- 180 (360)
T ss_dssp EEECGGGTS-CSCCCGGGCCCCT------TEEEEEEESEETTTTEECS--SC------CCCCSSCEEEECTTTTTSS---
T ss_pred eecccccCc-CCccchHhhccCC------CCCEEEEeCCCCCcceecc--cc------cccCCceEEEechhhcCCC---
Confidence 998753333 68888887 6643 7899999999999999987 22 3379999999999986432
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc--------------ccCCCcHHHHH
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS--------------SFTLISSQTQY 316 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~--------------~~~~~s~~~q~ 316 (442)
..++ .+ . .++++|+||.+|++| +||++++ +.+.+.++... ..+..+...+.
T Consensus 181 -~~~~----~~-----~--di~~~s~sK~~~~~G--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (360)
T 1w23_A 181 -PLKV----NQ-----F--GMIYAGAQKNLGPSG--VTVVIVK-KDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIY 245 (360)
T ss_dssp -CCCG----GG-----C--SEEEEETTTTTSCTT--CEEEEEE-HHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHH
T ss_pred -CcCc----cc-----C--CEEEEEcccccCCCC--cEEEEEc-HHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHH
Confidence 1121 11 1 268899999999666 8999995 44443332211 11234555555
Q ss_pred HHHHHhcCchhHHH--HHHHHHHHHHHHHHHHHHHHHhCC-C-eee-cC--CceEEEEEecCCcccccChhhHHHHHHHH
Q 046900 317 LLASMLSNKKFTEN--YIKTNRERLQKRYQMIIEGLRSAG-I-ECL-KG--NAGLFCWMNLSPLLEEQTREGELALWDSM 389 (442)
Q Consensus 317 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~-~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~l 389 (442)
++...++. ..+ ++++.+++++++++++.+.|++.+ + ... .+ .+++++|++++.. .+..++.+.|
T Consensus 246 ~~~~al~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l 316 (360)
T 1w23_A 246 MLRNVLDW---IKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNE------ELNQQFLAKA 316 (360)
T ss_dssp HHHHHHHH---HHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSH------HHHHHHHHHH
T ss_pred HHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCC------ccHHHHHHHH
Confidence 55555542 222 467788899999999999998875 4 543 13 3566899998752 1356777777
Q ss_pred HHcCcEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHHHHH
Q 046900 390 LHEVKLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 390 ~~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~ 436 (442)
.++ ||.+.||..| ++++||+++. .+++++++++++|++++++
T Consensus 317 ~~~-gi~~~~~~~~----~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 317 KEQ-GFVGLNGHRS----VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp HHT-TEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHC-CeeeecCCCC----CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 655 9999998754 4789999983 2789999999999988754
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=247.04 Aligned_cols=355 Identities=12% Similarity=0.083 Sum_probs=226.6
Q ss_pred CCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC
Q 046900 45 TNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120 (442)
Q Consensus 45 ~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 120 (442)
.....+|||+.+ .+.++ ++.+.+.+.+..... ...|+...+..++++++++++.+.++ .+.
T Consensus 47 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~-----------~~~~~~~~~~~~~~~~la~~l~~~~~----~~~ 111 (459)
T 4a6r_A 47 SEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEEL-----------PFYNTFFKTTHPAVVELSSLLAEVTP----AGF 111 (459)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHC-----------SCCCTTSSSCCHHHHHHHHHHHHHSC----TTC
T ss_pred CCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhc-----------cccccccccCCHHHHHHHHHHHHhCC----CCC
Confidence 445678999876 45543 345555444332110 01233333456778888888887654 467
Q ss_pred CcEEEecChHHHHHHHHHhhcC--------CCCeEEEcCCCCcChHHhHhhhcCc------------EEEEEecCC--C-
Q 046900 121 NRIVVTAGATAANELLTFILAD--------PGDALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCDS--S- 177 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~l~~--------~gd~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~~--~- 177 (442)
++|++|+|+++++..+++++.. +++.|++.+|+|.++...+....|. .+..++... .
T Consensus 112 ~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 191 (459)
T 4a6r_A 112 DRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKH 191 (459)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHH
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccC
Confidence 8999999999999999998875 5799999999999876554421111 222333211 0
Q ss_pred CCCcCC--------HHHHHHHHHHHHhcCCceeEEEEeCCC-CCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCC
Q 046900 178 NNFQIT--------PQALEAAYKEAESKDMRVRGVLITNPS-NPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAF 247 (442)
Q Consensus 178 ~~~~~d--------~~~l~~~l~~~~~~~~~~~~v~l~~P~-NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~ 247 (442)
+.+ +| +++|++.+.+... .++ ++++++|. |++|. +.+.+.+++|.++|++||+++|+||+|.++..
T Consensus 192 ~~~-~d~~~~~~~~~~~le~~i~~~~~--~~~-~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr 267 (459)
T 4a6r_A 192 GKD-MTPDEFGVVAARWLEEKILEIGA--DKV-AAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGR 267 (459)
T ss_dssp CTT-CCHHHHHHHHHHHHHHHHHHHCG--GGE-EEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred Ccc-cCHHHHHHHHHHHHHHHHHHcCC--CCE-EEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 112 34 7888888864211 134 45666665 45555 55899999999999999999999999998766
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHH-----HccccCCCcHHHHHHHHHHh
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTAR-----RMSSFTLISSQTQYLLASML 322 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~-----~~~~~~~~s~~~q~~~~~~l 322 (442)
.+..+ .. .... .... +.+|||+++..|+|+||+++ ++.+.+.+. .....+..++++|.++.+.|
T Consensus 268 ~G~~~-~~-~~~~-----~~pd---i~t~sK~l~gg~~~lg~v~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal 336 (459)
T 4a6r_A 268 TGEWF-GH-QHFG-----FQPD---LFTAAKGLSSGYLPIGAVFV-GKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANV 336 (459)
T ss_dssp TSSSS-HH-HHHT-----CCCS---EEEECGGGGTTSSCCEEEEE-CHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHH
T ss_pred ccccc-hH-hhcC-----CCCC---eeehhhhhcCCCCCccceee-CHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHH
Confidence 66422 22 2211 1122 33789999744499999999 677777665 22234667889999988888
Q ss_pred cCchhHHHHHHHHH-HHHHHHHHHHHHHHHhCC-CeeecCCceEEEEEecCCcccc-----cChhhHHHHHHHHHHcCcE
Q 046900 323 SNKKFTENYIKTNR-ERLQKRYQMIIEGLRSAG-IECLKGNAGLFCWMNLSPLLEE-----QTREGELALWDSMLHEVKL 395 (442)
Q Consensus 323 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~gi 395 (442)
+.... ++.+++.+ +.....++.+.+.|.+.+ +....+.| .|+++++...... .......++++.|+++ ||
T Consensus 337 ~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv 413 (459)
T 4a6r_A 337 AALRD-EGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVG-MVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRN-NL 413 (459)
T ss_dssp HHHHH-TCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEET-TEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHT-TE
T ss_pred HHHhc-chHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEE-EEEEEEEecCccccccccchHHHHHHHHHHHHHC-Ce
Confidence 73211 12233344 344444455545555443 44444554 4777776542110 0111256788888877 99
Q ss_pred EEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 396 NISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 396 ~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
.+.|+. +++||++. ..+++++++++++|++++++...
T Consensus 414 ~v~~~g-------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (459)
T 4a6r_A 414 IMRACG-------DHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQ 451 (459)
T ss_dssp ECEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999862 68999954 33899999999999999987654
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-29 Score=247.04 Aligned_cols=350 Identities=11% Similarity=0.068 Sum_probs=214.9
Q ss_pred CCCCceeeeeccc--cccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC
Q 046900 45 TNPSGVIQMGLAE--NQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120 (442)
Q Consensus 45 ~~~~~~i~l~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 120 (442)
.....+||++.+. +.++ ++.+.+.+.+..... ....|+ .....+|++++++++. .+
T Consensus 52 ~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----------~~~~~~-~~~~~~l~~~la~~~~---------~~ 111 (434)
T 3l44_A 52 VDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENG----------VLYGTP-TALEVKFAKMLKEAMP---------AL 111 (434)
T ss_dssp TTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHC----------SCCSSC-CHHHHHHHHHHHHHCT---------TC
T ss_pred CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC----------cCCCCC-CHHHHHHHHHHHHhCC---------CC
Confidence 4456789998764 4443 455555544332110 012343 2345667676666542 47
Q ss_pred CcEEEecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCc------------CCHHH
Q 046900 121 NRIVVTAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQ------------ITPQA 186 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~------------~d~~~ 186 (442)
++|++|+|+++++..+++.+.. +++.|++.+|+|.++...+....|.....+......++. -|++.
T Consensus 112 ~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 191 (434)
T 3l44_A 112 DKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVET 191 (434)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHH
T ss_pred CEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHH
Confidence 8999999999999999987754 678999999999887654432223222111111111110 17899
Q ss_pred HHHHHHHHHhcCCceeEEEEeCCC-CCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcC
Q 046900 187 LEAAYKEAESKDMRVRGVLITNPS-NPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQY 264 (442)
Q Consensus 187 l~~~l~~~~~~~~~~~~v~l~~P~-NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~ 264 (442)
|++++++.. .+++ +++++|+ |++|.+. +.+.+++|.++|++||+++|+||+|.+| ..+.. ... ....-
T Consensus 192 le~~l~~~~---~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~-~~~-~~~~~--- 261 (434)
T 3l44_A 192 LKEALDKWG---HEVA-AILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYG-GAQ-DLLGV--- 261 (434)
T ss_dssp HHHHHHHHG---GGEE-EEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSS-CHH-HHHTC---
T ss_pred HHHHHHhCC---CCEE-EEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-ecccc-HHH-HHcCC---
Confidence 999997632 1444 5555564 5666655 8888999999999999999999999987 44432 122 22110
Q ss_pred CCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH-----ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 046900 265 KDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR-----MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERL 339 (442)
Q Consensus 265 ~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~-----~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 339 (442)
... +.||||.+| +|+|+||+++ ++.+.+.+.. ....+..+++++.++.+.++.... ++.+++.++..
T Consensus 262 --~~d---i~t~sK~~~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~~~~~~~~~~~ 333 (434)
T 3l44_A 262 --TPD---LTALGKVIG-GGLPIGAYGG-KKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-EGLYEKLDELG 333 (434)
T ss_dssp --CCS---EEEEEGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHH
T ss_pred --CCC---eeehhhhhc-CCcCeeeEEE-cHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHHHH
Confidence 111 458999998 8999999988 6666666554 223356788888888777762111 11222222322
Q ss_pred HHHHHHHHHHHHhCCCeeecCCceEEEEEecCCccc-c------cChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEE
Q 046900 340 QKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLE-E------QTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFR 412 (442)
Q Consensus 340 ~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~-~------~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iR 412 (442)
...++.+.+.+.+.++....+..|.++++.+..... . .......++++.|+++ ||.+.|+. .+++|
T Consensus 334 ~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------~~~~r 406 (434)
T 3l44_A 334 ATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE-GVNLAPSK------YEAWF 406 (434)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT-TEECCSST------TCCEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHC-CeEEeecC------CCcEE
Confidence 333333433333344433333344577776632110 0 1112346788888777 99999864 24689
Q ss_pred EEeecCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 413 VCFANMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 413 ls~~~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
+++.. +++++++++++|++++++.+++
T Consensus 407 l~~~~-t~e~i~~~l~~l~~~l~~~~~~ 433 (434)
T 3l44_A 407 LTTEH-TKEDIEYTIEAVGRAFAALADN 433 (434)
T ss_dssp CCTTC-CHHHHHHHHHHHHHHHHHHHHC
T ss_pred Eeccc-CHHHHHHHHHHHHHHHHHHHhc
Confidence 98765 9999999999999999887653
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-29 Score=245.74 Aligned_cols=327 Identities=14% Similarity=0.187 Sum_probs=223.8
Q ss_pred eeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCC-CcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecCh
Q 046900 52 QMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQD-YHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGA 129 (442)
Q Consensus 52 ~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~ 129 (442)
+|+.++++++. +.+.+.+.+... ...|++ ..+..++|++++++++ .++|++|+|+
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~-------------~~~y~~~~~~~~~l~~~la~~~~----------~~~v~~~~gg 76 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALD-------------SQWLSNGGPLVREFEERVAGLAG----------VRHAVATCNA 76 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHH-------------HTCCSSSCHHHHHHHHHHHHHHT----------SSEEEEESCH
T ss_pred cccccCCCCCChHHHHHHHHHHHh-------------cCCcccCCHHHHHHHHHHHHHhC----------CCeEEEeCCH
Confidence 67888887754 344444443321 124776 6789999999999985 3589999999
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCC
Q 046900 130 TAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNP 209 (442)
Q Consensus 130 ~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P 209 (442)
++++.+++.++. +||.|+++.|+|+.+...+.. .|++++.+++++ ++|.+|+++|++.+++ ++++|+++
T Consensus 77 t~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~~~~-~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~-- 145 (424)
T 2po3_A 77 TAGLQLLAHAAG-LTGEVIMPSMTFAATPHALRW-IGLTPVFADIDP-DTGNLDPDQVAAAVTP------RTSAVVGV-- 145 (424)
T ss_dssp HHHHHHHHHHHT-CCSEEEEESSSCTHHHHHHHH-TTCEEEEECBCT-TTSSBCHHHHGGGCCT------TEEEEEEE--
T ss_pred HHHHHHHHHHcC-CCCEEEECCCccHHHHHHHHH-cCCEEEEEecCC-CcCCcCHHHHHHhhCc------CCcEEEEE--
Confidence 999999999985 789999999999999998885 899999999875 3578999999988754 78888876
Q ss_pred CCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCC-cCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeE
Q 046900 210 SNPLGATIQRSVLEELLDFATRKNIHLVSDEIYS-GSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVG 288 (442)
Q Consensus 210 ~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~-~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG 288 (442)
||||...+ +++|+++|+++|++||+||+|+ .+.+++. ++.. ... +++.||||..+++|+|+|
T Consensus 146 -~~tG~~~~---l~~i~~la~~~~~~li~Dea~~~g~~~~~~---~~~~---------~~d-i~~~S~sk~K~l~~~~~G 208 (424)
T 2po3_A 146 -HLWGRPCA---ADQLRKVADEHGLRLYFDAAHALGCAVDGR---PAGS---------LGD-AEVFSFHATKAVNAFEGG 208 (424)
T ss_dssp -CGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTS---------SSS-EEEEECCTTSSSCCSSCE
T ss_pred -CCCCCcCC---HHHHHHHHHHcCCEEEEECccccCCeECCe---eccc---------ccC-EEEEeCCCCCCccCCCCe
Confidence 48998765 8888899999999999999999 4555442 1110 122 788999955566778999
Q ss_pred EEeecCHHHHHHHHHccccCC----------Cc-HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 046900 289 TIYSYNDKVVTTARRMSSFTL----------IS-SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIE 356 (442)
Q Consensus 289 ~i~~~~~~~~~~~~~~~~~~~----------~s-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 356 (442)
|++++++.+.+.++.....+. .+ .+.+.+++..+.. .+.+++..++.++.++++.+.|.+. |++
T Consensus 209 ~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 284 (424)
T 2po3_A 209 AVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS----LDAFPEVIDRNRRNHAAYREHLADLPGVL 284 (424)
T ss_dssp EEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTCSCTTEE
T ss_pred EEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 999965676666554322110 00 1122222222221 2234556666777778888888876 777
Q ss_pred eec-CCce----EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC--------------CCCE-------
Q 046900 357 CLK-GNAG----LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS--------------EPGW------- 410 (442)
Q Consensus 357 ~~~-~~~g----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~--------------~~~~------- 410 (442)
+.. +.++ +++++.++..... .+..++.+.|.++ ||.+.+ .|... .+++
T Consensus 285 ~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~L~~~-gI~v~~--~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~ 358 (424)
T 2po3_A 285 VADHDRHGLNNHQYVIVEIDEATTG---IHRDLVMEVLKAE-GVHTRA--YFSPGCHELEPYRGQPHAPLPHTERLAARV 358 (424)
T ss_dssp ECCGGGGSCCCCCCEEEEECHHHHS---SCHHHHHHHHHHT-TEECBC--TTCSCGGGSTTTTTSCCCCCHHHHHHHTTE
T ss_pred ccCCCCCCccccEEEEEEECCccch---hhHHHHHHHHHHC-CCceec--ccCCccccchhhhhcCCCCChhHHHHhcCE
Confidence 765 4443 2344666530000 0256777777555 999987 22210 0122
Q ss_pred EEEEe-ecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 411 FRVCF-ANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 411 iRls~-~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
+|+++ ...+++++++++++|++++++..+
T Consensus 359 l~l~~~~~~t~e~i~~~~~~L~~~~~~~~~ 388 (424)
T 2po3_A 359 LSLPTGTAIGDDDIRRVADLLRLCATRGRE 388 (424)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHhhhHH
Confidence 66663 244899999999999999876543
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=245.29 Aligned_cols=295 Identities=15% Similarity=0.169 Sum_probs=205.8
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----Hhhh
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD----LRWR 164 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~ 164 (442)
..|+ ..|.+ +++++++++.+.+| .+++++++|+++++..++. ++++||.|+++.|+|+.+... ++ .
T Consensus 125 ~~Y~-~~g~~-~~~~l~~~la~~~g------~~~~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~-~ 194 (464)
T 1ibj_A 125 YDYT-RSGNP-TRDALESLLAKLDK------ADRAFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVP-R 194 (464)
T ss_dssp CSBT-TTCCH-HHHHHHHHHHHHHT------CSEEEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSG-G
T ss_pred cccc-CCCCH-HHHHHHHHHHHHhC------CCeEEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHH-H
Confidence 4565 34555 78899999888766 3477888888999998876 779999999999999998753 34 3
Q ss_pred cCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc
Q 046900 165 TGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG 244 (442)
Q Consensus 165 ~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~ 244 (442)
.|++++.++++ |+++|++++++ ++++|++++|+||||.+++ +++|+++|++||+++|+||+|..
T Consensus 195 ~G~~v~~v~~~-------d~~~l~~~i~~------~tk~v~l~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~ 258 (464)
T 1ibj_A 195 SGVVVKRVNTT-------KLDEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMS 258 (464)
T ss_dssp GTCEEEEECTT-------SHHHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTC
T ss_pred cCCEEEEeCCC-------CHHHHHHHhcc------CceEEEEeCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCcc
Confidence 79999999863 78999988753 7899999999999999997 88899999999999999999985
Q ss_pred CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCC-CCceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHH
Q 046900 245 SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGL-PGFRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASM 321 (442)
Q Consensus 245 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~-~G~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~ 321 (442)
... ..++ . .+..+++.|+||.++. +|+|+||++++++.+.+.+..... .+.++++.|.++...
T Consensus 259 g~~----~~~~-~---------~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~a 324 (464)
T 1ibj_A 259 PVL----SRPL-E---------LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRG 324 (464)
T ss_dssp TTT----CCGG-G---------TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHH
T ss_pred ccc----CChh-h---------cCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 221 1111 1 1467889999999864 389999999976677666655442 245678888888877
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHH----------HHHHhC-CCeeecCC---ceEEEEEecCCcccccChhhHHHHHH
Q 046900 322 LSNKKFTENYIKTNRERLQKRYQMII----------EGLRSA-GIECLKGN---AGLFCWMNLSPLLEEQTREGELALWD 387 (442)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~l~----------~~L~~~-g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~l~~ 387 (442)
++.... .+++..+......+++. +.|++. ++++..++ .|.++|++++. .+....+.+
T Consensus 325 l~~~~~---r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~------~~~~~~~~~ 395 (464)
T 1ibj_A 325 IKTMAL---RIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS------VALSKHLVE 395 (464)
T ss_dssp HTTHHH---HHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC------HHHHHHHHH
T ss_pred hhhHHH---HHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECC------HHHHHHHHH
Confidence 775321 11221111211122221 223222 34444443 24477788742 112345666
Q ss_pred HHHHcCcEEEeCCC------------CCCC---------CCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 388 SMLHEVKLNISPGS------------SCHC---------SEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 388 ~l~~~~gi~v~pg~------------~f~~---------~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
.|.. .||.+.+|. .|.. ..++++||+++. |++++++++|++++++
T Consensus 396 ~L~~-~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 396 TTKY-FSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI---EDVDDLISDLDIAFKT 461 (464)
T ss_dssp HCSS-SEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS---SCHHHHHHHHHHHHHS
T ss_pred hcCc-ceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC---CCHHHHHHHHHHHHhh
Confidence 6644 599998886 2211 125789999986 6799999999998763
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=240.13 Aligned_cols=345 Identities=11% Similarity=0.059 Sum_probs=223.3
Q ss_pred ceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecC
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAG 128 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G 128 (442)
+.|+|..++|+.++. +.+.+.+..... . + ..+.....|.......++++.+.+.+.+.++ +++++|++++|
T Consensus 26 ~~i~l~~~~~~~~~~-v~~a~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g----~~~~~i~~~sG 96 (417)
T 3n0l_A 26 EGLEMIASENFTLPE-VMEVMGSILTNK-Y--A-EGYPGKRYYGGCEFVDEIETLAIERCKKLFN----CKFANVQPNSG 96 (417)
T ss_dssp HSEECCTTCCCCCHH-HHHHHTBGGGGC-C--C-CEETTEESSSCCHHHHHHHHHHHHHHHHHHT----CSEEECCCSSH
T ss_pred cCeeeecccCCCCHH-HHHHHhhhhhcc-c--c-ccCCCccccccchHHHHHHHHHHHHHHHHhC----CCCcceEeccH
Confidence 457888888877544 444444332110 0 0 0001112343444456777766666666655 56778988888
Q ss_pred hHHHHHHHHHhhcCCCCeEEEcCCCCcChHH---hHhh-hcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 129 ATAANELLTFILADPGDALLVPTPYYPGFDR---DLRW-RTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 129 ~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~---~~~~-~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
++++.+++.+++++||.|+++.|+|..+.. .+.. ..++.+++++.+ .++.+|++.|++.+++. ++++|
T Consensus 97 -t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~-----~~~~v 168 (417)
T 3n0l_A 97 -SQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDGRIDYEKVREIAKKE-----KPKLI 168 (417)
T ss_dssp -HHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCC--TTSSCCHHHHHHHHHHH-----CCSEE
T ss_pred -HHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC--CCCCcCHHHHHHHHHhc-----CCeEE
Confidence 799999999999999999999999987644 2221 134556666665 45779999999999742 78888
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCC-cCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYS-GSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~-~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
++++|+| |.+++ +++|.++|++||++||+||+|. ...+.+..+..+ ....+++.|+||.+ +
T Consensus 169 ~~~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~-----------~~~di~~~s~sK~l--~ 230 (417)
T 3n0l_A 169 VCGASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPF-----------PYAHVVSSTTHKTL--R 230 (417)
T ss_dssp EECCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCT-----------TTCSEEEEESSTTT--C
T ss_pred EECCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCCCcc-----------ccceEEEeeCcccc--C
Confidence 8888886 77888 7889999999999999999964 222322211111 12247889999987 7
Q ss_pred CceeEEEeecCHHHHHHHHHccccC---CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec-
Q 046900 284 GFRVGTIYSYNDKVVTTARRMSSFT---LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK- 359 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~- 359 (442)
|+|+||++++++.+.+.+......+ ..+...+.++...+.. ...+++++.++++.++++++.+.|.+.|+++..
T Consensus 231 g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 308 (417)
T 3n0l_A 231 GPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKF--NLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSD 308 (417)
T ss_dssp SCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGG
T ss_pred CCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccC
Confidence 8899999996577777766543332 2233444444433332 112345677888888999999999988888765
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC----CCCEEEEEeec-----CCHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS----EPGWFRVCFAN-----MSEQTLEVALKRI 430 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~----~~~~iRls~~~-----~~~e~i~~~l~~l 430 (442)
+..+.++|+.++.... +...+.+.| +++||.+.++..+... ....+|+++.. ++++++++++++|
T Consensus 309 ~~~~~~~~~~~~~~~~-----~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l 382 (417)
T 3n0l_A 309 GTDNHLVLMSFLDREF-----SGKDADLAL-GNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYI 382 (417)
T ss_dssp SCSSSEEEEECTTSSS-----CHHHHHHHH-HHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCceEEEEEcccCCC-----CHHHHHHHH-HHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHH
Confidence 2345688888764211 245555555 4559999976543221 23569999852 3679999999999
Q ss_pred HHHHHH
Q 046900 431 HNFMQK 436 (442)
Q Consensus 431 ~~~l~~ 436 (442)
++++++
T Consensus 383 ~~~l~~ 388 (417)
T 3n0l_A 383 ADILDD 388 (417)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999864
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-29 Score=245.50 Aligned_cols=283 Identities=11% Similarity=0.069 Sum_probs=203.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc------CCCCeE-EEcCCCCcChHHhHhh---hc
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA------DPGDAL-LVPTPYYPGFDRDLRW---RT 165 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~------~~gd~V-l~~~p~y~~~~~~~~~---~~ 165 (442)
...++++.++++++ +++++|++|+|+++++..++.+++ ++||.| +++.++|+.+...+.. ..
T Consensus 72 ~~~~l~~~la~~~g--------~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~ 143 (416)
T 1qz9_A 72 LSERLGNRLATLIG--------ARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADML 143 (416)
T ss_dssp HHHHHHHHHHTTTT--------CCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--------CCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHh
Confidence 44667777777653 567899999999999998888876 899875 5555677765443221 13
Q ss_pred --CcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCC
Q 046900 166 --GIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYS 243 (442)
Q Consensus 166 --G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~ 243 (442)
|++++.+++ +++|++.+++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+
T Consensus 144 ~~g~~~~~v~~---------~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~ 205 (416)
T 1qz9_A 144 QQGYTLRLVDS---------PEELPQAIDQ------DTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHS 205 (416)
T ss_dssp CSSCEEEEESS---------GGGHHHHCST------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTT
T ss_pred cCCceEEEeCc---------HHHHHHHhCC------CceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEcccc
Confidence 999988874 5778887753 7899999999999999998 7888899999999999999998
Q ss_pred cCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee-EEEeecCHHHHHHHHHc------------------
Q 046900 244 GSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV-GTIYSYNDKVVTTARRM------------------ 304 (442)
Q Consensus 244 ~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri-G~i~~~~~~~~~~~~~~------------------ 304 (442)
. +. ...++..+ +..+++.|+||.++ +|.++ ||++++++ +.+.++..
T Consensus 206 ~---g~-~~~~~~~~---------~~d~~~~s~~K~l~-~g~~~~g~l~~~~~-~~~~l~~~~~g~~g~~~~~~~~~~~~ 270 (416)
T 1qz9_A 206 A---GA-VPVDLHQA---------GADYAIGCTYKYLN-GGPGSQAFVWVSPQ-LCDLVPQPLSGWFGHSRQFAMEPRYE 270 (416)
T ss_dssp T---TT-SCCCHHHH---------TCSEEEECSSSTTC-CCTTCCCEEEECTT-TTTTSCCSCCCGGGBCTTSCCCSSCC
T ss_pred c---cC-cCCChhhc---------CCCEEEecCcccCC-CCCCCeEEEEECHH-HHhccCCCccccCccccccCCCCccC
Confidence 3 22 22233322 23377899999985 78888 99999544 33322221
Q ss_pred -------cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCC----ceEEEEEe
Q 046900 305 -------SSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA----GIECLKGN----AGLFCWMN 369 (442)
Q Consensus 305 -------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~----~g~~~~~~ 369 (442)
...+..+...+.++.+.++... ..++++.+++++++++++.+.|.+. |+++..+. .+.++|++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~ 348 (416)
T 1qz9_A 271 PSNGIARYLCGTQPITSLAMVECGLDVFA--QTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFE 348 (416)
T ss_dssp BCSSGGGGCCSCCCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEE
T ss_pred CCcchHHhcCCCCCHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEe
Confidence 0123345556655555554211 1235677888889999999999876 88887663 24578998
Q ss_pred cCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee--cCCHHHHHHHHHHHHHHHHHH
Q 046900 370 LSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA--NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~e~i~~~l~~l~~~l~~~ 437 (442)
++. ..++.+.|.++ ||.+.. ...+++||+++ ..+++++++++++|++++++.
T Consensus 349 ~~~---------~~~l~~~l~~~-gi~~~~------~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 349 HPE---------GYAVIQALIDR-GVIGDY------REPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp CTT---------HHHHHHHHHTT-TEECEE------ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCC---------HHHHHHHHHhC-CcEecc------CCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 864 45788888766 998753 13578999996 458999999999999998763
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-29 Score=239.86 Aligned_cols=288 Identities=13% Similarity=0.123 Sum_probs=206.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCC-c-EEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcCh--HHhHhhhcCcEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLN-R-IVVTAGATAANELLTFILADPGDALLVPTPYYPGF--DRDLRWRTGIKIVP 171 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~-~-i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~--~~~~~~~~G~~v~~ 171 (442)
+..++++++.+.+.+.+| ++++ + +++|+|+++++..++.+++++||+|+++.+.+... ...++. .| +++.
T Consensus 46 ~~~~~~~~~~~~la~~~g----~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~-~g-~~~~ 119 (362)
T 2c0r_A 46 VYEAVHNEAQARLLALLG----NPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKL-IG-DTHV 119 (362)
T ss_dssp HHHHHHHHHHHHHHHHTT----CCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHH-HS-CEEE
T ss_pred HHHHHHHHHHHHHHHHhC----CCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHH-hC-CeEE
Confidence 446677888888877766 4554 6 57789999999999999999999999887664432 345553 79 9999
Q ss_pred EecCCC--CCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC
Q 046900 172 IHCDSS--NNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS 249 (442)
Q Consensus 172 v~~~~~--~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~ 249 (442)
++++.+ .++.+|.++++ ++ .++|+|++++|+||||.+++ ++++| +|+++|+|++|+.+..
T Consensus 120 v~~~~~~~~~~~~~~~~~~--i~------~~t~~v~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~-- 181 (362)
T 2c0r_A 120 AASSEASNYMTLPKLQEIQ--LQ------DNAAYLHLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDILSR-- 181 (362)
T ss_dssp EEECGGGTTCSCCCGGGCC--CC------TTEEEEEEESEETTTTEECS--SCCCC------TTSCEEEECTTTTTSS--
T ss_pred EecccccccccCCCHHHcc--cC------CCcCEEEEeCCcCccceecc--ccccc------CCCEEEEEChhhccCC--
Confidence 988632 23335665543 32 37899999999999999754 24444 7999999999985432
Q ss_pred CCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--------------ccccCCCcHHHH
Q 046900 250 SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--------------MSSFTLISSQTQ 315 (442)
Q Consensus 250 ~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--------------~~~~~~~s~~~q 315 (442)
..++ .+ . .+++.|+||.+|++| +||++++++ +.+.+.. ....++.+.+.|
T Consensus 182 --~~~~----~~-----~--d~~~~s~~K~~g~~G--~G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 245 (362)
T 2c0r_A 182 --PFDL----NQ-----F--GLVYAGAQKNLGPSG--VTVVIVRED-LVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGI 245 (362)
T ss_dssp --CCCG----GG-----C--SEEEEETTTTTCCSS--CEEEEEEGG-GSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHH
T ss_pred --ccch----hH-----C--cEEEEeccccccCcC--cEEEEEcHH-HHhhccccCchHHhHHHHhhccCcCCCchHHHH
Confidence 1121 11 1 267789999999888 899999543 3322221 122355677788
Q ss_pred HHHHHHhcCchhHHH--HHHHHHHHHHHHHHHHHHHHHhCC-C-eeec---CCceEEEEEecCCcccccChhhHHHHHHH
Q 046900 316 YLLASMLSNKKFTEN--YIKTNRERLQKRYQMIIEGLRSAG-I-ECLK---GNAGLFCWMNLSPLLEEQTREGELALWDS 388 (442)
Q Consensus 316 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (442)
.++..+++. ..+ .+++.+++++++++++.+.|++.| + ++.. ..++.++|+.++... +..++++.
T Consensus 246 ~a~~~al~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 316 (362)
T 2c0r_A 246 YMVNEVLKW---IEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEE------LEKEFVKA 316 (362)
T ss_dssp HHHHHHHHH---HHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHH------HHHHHHHH
T ss_pred HHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCcc------hHHHHHHH
Confidence 888877763 222 467888999999999999999887 6 6642 123456788886421 35678888
Q ss_pred HHHcCcEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHH
Q 046900 389 MLHEVKLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 389 l~~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~ 437 (442)
|.++ ||.+.||..| .+++|||++. .++++++++++.|+++++++
T Consensus 317 L~~~-gi~~~~g~~~----~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 317 SEQE-GFVGLKGHRS----VGGLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp HHHT-TEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHC-CCeeccCCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 7665 9999998765 3579999973 27899999999999998765
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-28 Score=239.07 Aligned_cols=345 Identities=13% Similarity=0.116 Sum_probs=210.8
Q ss_pred ceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHH-HHHHHHhCCCCccCCCcEEEec
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMA-SFMEQIRGGRAKFDLNRIVVTA 127 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia-~~l~~~~~~~~~~~~~~i~~t~ 127 (442)
+.|+|..++|+++ +.+.+.+.+..... ...+ ......|+.. ...++++.++ +.+.+..+ .+. ..++++
T Consensus 33 ~~i~l~~~~~~~~-~~v~~a~~~~~~~~-~~~~---~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~----~~~-~~v~~~ 101 (425)
T 3ecd_A 33 SQVELIASENIVS-RAVLDAQGSVLTNK-YAEG---YPGKRYYGGC-EFADEVEALAIERVKRLFN----AGH-ANVQPH 101 (425)
T ss_dssp HSEECCTTCCCCC-HHHHHHHTSGGGSS-CTTC----------------CCHHHHHHHHHHHHHHT----CSE-EECCCS
T ss_pred cceeeecccCCCC-HHHHHHHhhhhhcc-cccC---CCcchhcCCC-hHHHHHHHHHHHHHHHHhC----CCC-ceeecC
Confidence 4578888888774 44444444332110 0000 0001112221 1112334443 55555444 232 234588
Q ss_pred ChHHHHHHHHHhhcCCCCeEEEcCCCCcC---hHHhHhhhcCc--EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCcee
Q 046900 128 GATAANELLTFILADPGDALLVPTPYYPG---FDRDLRWRTGI--KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVR 202 (442)
Q Consensus 128 G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~---~~~~~~~~~G~--~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 202 (442)
|+++++..++.+++++||.|+++.|+|+. +...... .|. ++++++.++ +++.+|++.|++.+++. +++
T Consensus 102 ~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~-----~~~ 174 (425)
T 3ecd_A 102 SGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPAL-SGKWFNALQYGVSR-DTMLIDYDQVEALAQQH-----KPS 174 (425)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEEECC-------------------CEEEEECCCT-TTSSCCHHHHHHHHHHH-----CCS
T ss_pred chHHHHHHHHHHccCCCCEEEEcccccccceecchhhhh-cccceeeeecCCCc-ccCccCHHHHHHHHhhc-----CCc
Confidence 88899999999999999999999999987 2222221 344 555666553 35789999999999742 788
Q ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc-CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC
Q 046900 203 GVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG-SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG 281 (442)
Q Consensus 203 ~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~-~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g 281 (442)
+|++++|+||+. .+ +++|.++|++||++||+||+|.. +.+.+..+..+ . ...+++.|+||.+
T Consensus 175 ~v~~~~~~~~~~--~~---l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~----~-------~~di~~~s~sK~l- 237 (425)
T 3ecd_A 175 LIIAGFSAYPRK--LD---FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPV----E-------HAHVVTSTTHKTL- 237 (425)
T ss_dssp EEEEECSCCCSC--CC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGG----G-------TCSEEEEESSGGG-
T ss_pred EEEEccccCCCc--CC---HHHHHHHHHHcCCEEEEECcChHhhhhcccccCch----h-------cCcEEEecCCccc-
Confidence 999999999753 33 68999999999999999999542 22333222111 1 1127789999988
Q ss_pred CCCceeEEEeecCHHHHHHHHHccccC---CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 046900 282 LPGFRVGTIYSYNDKVVTTARRMSSFT---LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECL 358 (442)
Q Consensus 282 ~~G~RiG~i~~~~~~~~~~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 358 (442)
+|+|+||++++++.+.+.+......+ ......+.++...+.. ...+++++.+++++++++++.+.|.+.|+++.
T Consensus 238 -~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 314 (425)
T 3ecd_A 238 -RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGE--ALTDDFKTYIDRVLANAQALGDVLKAGGVDLV 314 (425)
T ss_dssp -CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEG
T ss_pred -CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhCCCeec
Confidence 67899999997677776665433221 2233333333333221 11234567788889999999999999898887
Q ss_pred cC-CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe----CCCCCCCCCCCEEEEEeec-----CCHHHHHHHHH
Q 046900 359 KG-NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS----PGSSCHCSEPGWFRVCFAN-----MSEQTLEVALK 428 (442)
Q Consensus 359 ~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~----pg~~f~~~~~~~iRls~~~-----~~~e~i~~~l~ 428 (442)
.+ .+++++|+.++.... +...+.+.| +++||.+. ||..+....++++|+++.. .++++++++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~l-~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~ 388 (425)
T 3ecd_A 315 TGGTDNHLLLVDLRPKGL-----KGAQVEQAL-ERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGR 388 (425)
T ss_dssp GGSCSSSEEEEECGGGTC-----CHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHH
T ss_pred cCCCCceEEEEEeCCCCC-----CHHHHHHHH-HHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHH
Confidence 54 467788888764211 244555666 44599999 5543333334689999542 24799999999
Q ss_pred HHHHHHHHH
Q 046900 429 RIHNFMQKR 437 (442)
Q Consensus 429 ~l~~~l~~~ 437 (442)
.|++++++.
T Consensus 389 ~l~~~l~~~ 397 (425)
T 3ecd_A 389 LILEVFEAL 397 (425)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999998875
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-29 Score=252.40 Aligned_cols=310 Identities=12% Similarity=0.099 Sum_probs=227.8
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC-----CC---CeEEEcCCCCcChHHhH
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD-----PG---DALLVPTPYYPGFDRDL 161 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~-----~g---d~Vl~~~p~y~~~~~~~ 161 (442)
.|....|..++++.+++++.+.+| .+.+++++++|+|+++++.+++.++++ +| |.|+++.|+|..+...+
T Consensus 98 ~~~~~~~~~~l~~~~~~~la~~~g--~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~ 175 (497)
T 3mc6_A 98 HPDVFPAVRKMESEVVSMVLRMFN--APSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAA 175 (497)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHTT--CCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHH
T ss_pred CcccChHHHHHHHHHHHHHHHHhC--CCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHH
Confidence 455567888999999999999877 223478999999999999999998865 46 89999999999999999
Q ss_pred hhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEecc
Q 046900 162 RWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEI 241 (442)
Q Consensus 162 ~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~ 241 (442)
.. .|++++.+|+++ +++.+|+++|++++.+ ++++|++++|+||||.+.+ +++|.++|++||+++|+|++
T Consensus 176 ~~-~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~livD~a 244 (497)
T 3mc6_A 176 YY-FGMKLRHVELDP-TTYQVDLGKVKKFINK------NTVLLVGSAPNFPHGIADD---IEGLGKIAQKYKLPLHVDSC 244 (497)
T ss_dssp HH-SCCEEEEECBCT-TTCSBCTTTTGGGCCS------SEEEEEEETTCTTTCCCCS---CTTTTTHHHHTTCCEEEETT
T ss_pred HH-cCCeEEEEecCc-ccCcCCHHHHHHHHhh------CCEEEEEECCCCCCCcCCC---HHHHHHHHHHhCCEEEEECc
Confidence 85 899999999875 3578999999998864 7899999999999999988 67888899999999999999
Q ss_pred CCcCCCC-----CCCcc-cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCC-----
Q 046900 242 YSGSAFS-----SSEFV-SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLI----- 310 (442)
Q Consensus 242 y~~~~~~-----~~~~~-s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~----- 310 (442)
|+.+... +.... ++ ... ..+..+++.|++|.++ +|.++||++++++.+..........+..
T Consensus 245 ~~~~~~~f~~~~~~~~~~~~-~~~------~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (497)
T 3mc6_A 245 LGSFIVSFMEKAGYKNLPLL-DFR------VPGVTSISCDTHKYGF-APKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGS 316 (497)
T ss_dssp TTHHHHGGGTTTTCCSCCCC-STT------STTCCEEEEETTTTTC-CCSSCEEEECSSHHHHTTTSCCBTTCTTSCBCC
T ss_pred chhhhhhhhhhhcccCCccc-ccc------CCCCcEEEECchhhcC-CCCCceeEEecCHHHHhhhhcccccccCCCcCC
Confidence 9854321 00000 00 000 1234577889999874 7889999999766544331111111100
Q ss_pred -------c---HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeec-CCceEEEEEecCCccccc
Q 046900 311 -------S---SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA--GIECLK-GNAGLFCWMNLSPLLEEQ 377 (442)
Q Consensus 311 -------s---~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~-~~~g~~~~~~~~~~~~~~ 377 (442)
+ ..++.++...+.. ..+++..++..++++++.+.|.+. |+++.. +.++ ++++..+..
T Consensus 317 ~~~~g~~~~~~~~a~~aal~~l~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~-~v~~~~~~~---- 386 (497)
T 3mc6_A 317 PTLAGSRPGAIVVGCWATMVNMGE-----NGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYS-VISFSSKTL---- 386 (497)
T ss_dssp SSSCSSCBHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSS-EEEEECTTT----
T ss_pred cCcccCCcchhHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCee-EEEEeCCCC----
Confidence 0 2345555555442 234667777888889999999984 888874 4555 444454421
Q ss_pred ChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 378 TREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 378 ~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
+..++.+.|.++ ||.+.++.. +..+|+++...+++++++++++|++++++..+
T Consensus 387 ---~~~~l~~~L~~~-Gi~v~~~~~-----~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 387 ---NIHELSDRLSKK-GWHFNALQK-----PVALHMAFTRLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp ---THHHHHHHHHTT-TCBCEECCS-----SCCEEEECCTTTTCTHHHHHHHHHHHHHHHTC
T ss_pred ---CHHHHHHHHHhC-CEEEecCCC-----CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 367888888776 999887543 34689999866899999999999999987654
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=243.19 Aligned_cols=353 Identities=12% Similarity=0.054 Sum_probs=216.8
Q ss_pred CCCCCceeeeecc--cccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLA--ENQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+||++.+ .+.+ +++.+.+.+.+.... ...|....+..+.+.++++++.+..+ ..
T Consensus 40 d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~------------~~~~~~~~~~~~~~~~la~~l~~~~~----~~ 103 (448)
T 3dod_A 40 DINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGK------------IAHSTLLGMTNVPATQLAETLIDISP----KK 103 (448)
T ss_dssp ETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTT------------CSCCCCSSSEEHHHHHHHHHHHHHSC----TT
T ss_pred ECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHh------------ccCccccccCCHHHHHHHHHHHHhCC----CC
Confidence 3445678999875 3333 235555555543221 11232334556788888888887643 34
Q ss_pred CCcEEEecChHHHHHHHHHhhcC----CC----CeEEEcCCCCcChHHhHhhhcCc------------EEEEEecCCCCC
Q 046900 120 LNRIVVTAGATAANELLTFILAD----PG----DALLVPTPYYPGFDRDLRWRTGI------------KIVPIHCDSSNN 179 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~----~g----d~Vl~~~p~y~~~~~~~~~~~G~------------~v~~v~~~~~~~ 179 (442)
.++|++|+|+++++..+++++.. +| |.|++.+|+|.++...+....|. .+..++.+ ..
T Consensus 104 ~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 181 (448)
T 3dod_A 104 LTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP--YV 181 (448)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCC--CC
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC--cc
Confidence 68999999999999999988865 44 99999999998766443311221 22333332 22
Q ss_pred CcC-----------CHHHHHHHHHHHHhcCCceeEEEEeCCC-CCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 180 FQI-----------TPQALEAAYKEAESKDMRVRGVLITNPS-NPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 180 ~~~-----------d~~~l~~~l~~~~~~~~~~~~v~l~~P~-NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
|.. |+++|++.+++.. .++++|++..++ |++|. +.+.+.+++|.++|++||+++|+||+|.++.
T Consensus 182 ~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g 258 (448)
T 3dod_A 182 YRSESGDPDECRDQCLRELAQLLEEHH---EEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFG 258 (448)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHG---GGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred ccCCccchhhhhHHHHHHHHHHHHhCC---CCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Confidence 322 3788999887421 255555555555 88885 5677889999999999999999999999876
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH-------c--cccCCCcHHHHH
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR-------M--SSFTLISSQTQY 316 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~-------~--~~~~~~s~~~q~ 316 (442)
+.+..+ ..... +....+.+|||+++ .| +|+||+++ ++.+.+.+.. . ...+..+++++.
T Consensus 259 ~~g~~~-a~~~~---------~~~~di~t~sK~l~-~G~~~ig~v~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a 326 (448)
T 3dod_A 259 RTGKMF-ACEHE---------NVQPDLMAAGKGIT-GGYLPIAVTFA-TEDIYKAFYDDYENLKTFFHGHSYTGNQLGCA 326 (448)
T ss_dssp TTSSSS-GGGGG---------TCCCSEEEECGGGG-TTSSCCEEEEE-EHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHH
T ss_pred cccchh-hhhhc---------CCCCCEEEeccccc-CCcCceEEEEE-CHHHHHHhhhccccCCcccccCCCCcCHHHHH
Confidence 655432 11111 11111347899998 69 59999999 5667666644 2 233566888888
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCccccc-C----hhhHHHHHHHHHH
Q 046900 317 LLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQ-T----REGELALWDSMLH 391 (442)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~-~----~~~~~~l~~~l~~ 391 (442)
++.+.|+.... ++.+++.++..+..++.+.+ +.+.+........|+++|+.++...... . .....+++..|++
T Consensus 327 aa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 404 (448)
T 3dod_A 327 VALENLALFES-ENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRE 404 (448)
T ss_dssp HHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHH
Confidence 88888763211 12233344444444455555 5444322222334558888886532110 0 0013678888887
Q ss_pred cCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 392 EVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 392 ~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
+ ||.+.|+ .+++||+++ ..+++++++++++|++++++...
T Consensus 405 ~-Gv~~~~~-------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 445 (448)
T 3dod_A 405 L-GMLTRPL-------GDVIAFLPPLASTAEELSEMVAIMKQAIHEVTS 445 (448)
T ss_dssp T-TEECCEE-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred C-CcEEecc-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 7 9999986 268999754 33899999999999999987654
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=242.61 Aligned_cols=358 Identities=11% Similarity=0.025 Sum_probs=220.9
Q ss_pred CCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+|||+.+ .+.++ ++.+.+.+.+.... ...|....+..+++.++++++.+..+. ..
T Consensus 57 d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~------------~~~~~~~~~~~~~~~~la~~l~~~~~~---~~ 121 (451)
T 3oks_A 57 DVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGD------------FTHTCFMVTPYEGYVAVCEQLNRLTPV---RG 121 (451)
T ss_dssp ETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTT------------CSCCTTTTSCCHHHHHHHHHHHHHSSC---CS
T ss_pred ECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHh------------cccccCCccCCHHHHHHHHHHHHhCCc---CC
Confidence 3445678999876 44443 35555555443211 123443345567788888888776431 12
Q ss_pred CCcEEEecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhhcC-------------cEEEEEecCCC-------
Q 046900 120 LNRIVVTAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTG-------------IKIVPIHCDSS------- 177 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~G-------------~~v~~v~~~~~------- 177 (442)
.++|++|+|+++++..+++.+.. .++.|++..++|.++...+....| ..+..+|....
T Consensus 122 ~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 201 (451)
T 3oks_A 122 DKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFG 201 (451)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGC
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccc
Confidence 57899999999999999987653 458999999999887654432111 13445544310
Q ss_pred -CCCcC---CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCC--cCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 178 -NNFQI---TPQALEAAYKEAESKDMRVRGVLITNPSNPLG--ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 178 -~~~~~---d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG--~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
+.-.. +++.+++.+++.. +.+..++++++|.|++| .+.+.+.+++|.++|++||+++|+||+|.++.+.+..
T Consensus 202 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~ 279 (451)
T 3oks_A 202 KELATDGELAAKRAITVIDKQI--GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAM 279 (451)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHT--CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred cccchhhHHHHHHHHHHHHhhc--CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccc
Confidence 00001 2444445554321 12344677778877665 3446777999999999999999999999987665542
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhcCchhHH
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~ 329 (442)
+ ....... ... +.||||+++ .|+|+||+++ ++.+.+.+.. ....+..++++|.++.+.++.... +
T Consensus 280 ~-~~~~~~~------~pd---i~t~sK~l~-~G~~iG~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~ 346 (451)
T 3oks_A 280 F-ACEHEGI------DPD---LIVTAKGIA-GGLPLSAVTG-RAEIMDSPHVSGLGGTYGGNPIACAAALATIETIES-E 346 (451)
T ss_dssp S-GGGGGTC------CCS---EEEECGGGG-TTSSCEEEEE-EHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-T
T ss_pred h-hhhhcCC------CCC---eeeehhhhh-CCcceEEEEE-CHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh-h
Confidence 2 1111110 122 338999998 6999999999 5666655543 233466788999988888763211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcc-cccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLL-EEQTREGELALWDSMLHEVKLNISPGSSCHCSEP 408 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~ 408 (442)
+++++.++.....++.+.+.+.+..........|.|+|+++.... .........+++..|+++ ||.+.|+..|+
T Consensus 347 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~---- 421 (451)
T 3oks_A 347 GLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAA-GVIVLSCGTYG---- 421 (451)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHT-TEECEEECTTS----
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhC-CcEEecCCCCC----
Confidence 122333333333344444444444322222333558888773310 001122466788888777 99999976553
Q ss_pred CEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 409 GWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 409 ~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
+++|++++ ..+++++++++++|++++++
T Consensus 422 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 422 NVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 58999876 33899999999999998863
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=239.57 Aligned_cols=334 Identities=15% Similarity=0.156 Sum_probs=209.9
Q ss_pred CCCCceeeeecccc--cc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC
Q 046900 45 TNPSGVIQMGLAEN--QV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120 (442)
Q Consensus 45 ~~~~~~i~l~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 120 (442)
.....+|||+.+.+ .+ +++.+.+.+.+....... ....|+ .....+|++.+++++ + .
T Consensus 62 ~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~--------~~~~~~-~~~~~~l~~~la~~~----g------~ 122 (433)
T 1z7d_A 62 VNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI--------CSRAFF-SVPLGICERYLTNLL----G------Y 122 (433)
T ss_dssp TTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSC--------CCTTSE-EHHHHHHHHHHHHHH----T------C
T ss_pred CCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCC--------ccCCcC-CHHHHHHHHHHHhhc----C------C
Confidence 34557889887543 43 345555555544321000 001131 112345555555543 2 5
Q ss_pred CcEEEecChHHHHHHHHHhhc---------CCC-CeEEEcCCCCcChHHh-HhhhcC------------cEEEEEecCCC
Q 046900 121 NRIVVTAGATAANELLTFILA---------DPG-DALLVPTPYYPGFDRD-LRWRTG------------IKIVPIHCDSS 177 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~l~---------~~g-d~Vl~~~p~y~~~~~~-~~~~~G------------~~v~~v~~~~~ 177 (442)
++|++|+|+++++..+++++. .+| |.|++.+|+|.++... +.. .| .+++.+|.
T Consensus 123 ~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~-~g~~~~~~~~~p~~~~v~~~~~--- 198 (433)
T 1z7d_A 123 DKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISA-STTKKCTSNFGPFAPQFSKVPY--- 198 (433)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------CEEEECT---
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcc-cCCccccccCCCCCCCeEEeCC---
Confidence 799999999999999988753 467 9999999999876442 331 33 23444443
Q ss_pred CCCcCCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccH
Q 046900 178 NNFQITPQALEAAYKEAESKDMRVRGVLITNP-SNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSI 255 (442)
Q Consensus 178 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~ 255 (442)
.|++.|++.++. .++++ ++++| +|+||.+ ++.+.+++|.++|++||+++|+||+|.++.+.+..+ ..
T Consensus 199 ----~d~~~le~~l~~-----~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~-~~ 267 (433)
T 1z7d_A 199 ----DDLEALEEELKD-----PNVCA-FIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL-CV 267 (433)
T ss_dssp ----TCHHHHHHHHTS-----TTEEE-EEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GG
T ss_pred ----CCHHHHHHHhCC-----CCEEE-EEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcch-hh
Confidence 278999998841 26665 45556 5778975 688899999999999999999999998765544321 11
Q ss_pred HHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhcCchhHHHHH
Q 046900 256 AEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLSNKKFTENYI 332 (442)
Q Consensus 256 ~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~ 332 (442)
.... ....+ .||||.+| +| +|+||+++ ++.+.+.+.. ....+..+++++.++.+.++... +
T Consensus 268 ~~~~------~~~di---~t~sK~l~-~G~~~~G~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~---~-- 331 (433)
T 1z7d_A 268 HHYN------VKPDV---ILLGKALS-GGHYPISAVLA-NDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLI---N-- 331 (433)
T ss_dssp GGGT------CCCSE---EEECGGGG-TTSSCCEEEEE-CHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHH---H--
T ss_pred HhcC------CCCCE---EEECcccc-CCCCCeEEEEE-CHHHHhhhccccccccCCCCHHHHHHHHHHHHHHH---h--
Confidence 1110 01222 38999998 89 99999999 4566555443 22235567888888777775321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhC--CCee--ecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCC
Q 046900 333 KTNRERLQKRYQMIIEGLRSA--GIEC--LKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEP 408 (442)
Q Consensus 333 ~~~~~~~~~~~~~l~~~L~~~--g~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~ 408 (442)
....++++++++++.+.|++. ++.. ..+..|.++|++++... .+..++++.|+++ ||.+.|+ ..
T Consensus 332 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~-----~~~~~~~~~l~~~-Gv~v~~~------~~ 399 (433)
T 1z7d_A 332 EKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL-----VNVLDICLKLKEN-GLITRDV------HD 399 (433)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT-----CCHHHHHHHHHHT-TEECCEE------TT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh-----hHHHHHHHHHHHC-CeEEecC------CC
Confidence 134455666677777777653 3322 12234568888887521 1256788888876 9999985 24
Q ss_pred CEEEEEee-cCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 409 GWFRVCFA-NMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 409 ~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
+++|++++ ..+++++++++++|++++++...|
T Consensus 400 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 432 (433)
T 1z7d_A 400 KTIRLTPPLCITKEQLDECTEIIVKTVKFFDER 432 (433)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred CEEEEECCcCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 68999876 348999999999999999876554
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=240.27 Aligned_cols=330 Identities=13% Similarity=0.129 Sum_probs=220.8
Q ss_pred CCCceeeeeccccc--c--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 46 NPSGVIQMGLAENQ--V--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 46 ~~~~~i~l~~~~n~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
.+..+|||..+.+. + +++.+.+.+.+....... ....|+ .....++++.++++++ .+
T Consensus 74 ~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~--------~~~~~~-~~~~~~l~~~la~~~g----------~~ 134 (439)
T 2oat_A 74 EGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTL--------TSRAFY-NNVLGEYEEYITKLFN----------YH 134 (439)
T ss_dssp TCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSC--------CCTTSE-ESSHHHHHHHHHHHHT----------CS
T ss_pred CCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCc--------ccCccC-CHHHHHHHHHHHHhcC----------CC
Confidence 34568899886543 3 345555555543321100 001232 1234666666666642 57
Q ss_pred cEEEecChHHHHHHHHHhhc---------CCC-CeEEEcCCCCcChHH-hHhhhcC------------cEEEEEecCCCC
Q 046900 122 RIVVTAGATAANELLTFILA---------DPG-DALLVPTPYYPGFDR-DLRWRTG------------IKIVPIHCDSSN 178 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~---------~~g-d~Vl~~~p~y~~~~~-~~~~~~G------------~~v~~v~~~~~~ 178 (442)
+|++++|+++++..+++++. .+| |.|++.+|+|.+... .+.. .| .+++.+|.
T Consensus 135 ~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~-~g~~~~~~~~~p~~~~v~~~~~---- 209 (439)
T 2oat_A 135 KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISS-STDPTSYDGFGPFMPGFDIIPY---- 209 (439)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTT-CCCHHHHTTSCSCCTTEEEECS----
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhc-CCChhcccCCCCCCCCeEEeCC----
Confidence 89999999999999998864 357 899999999987643 3332 34 45666653
Q ss_pred CCcCCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHH
Q 046900 179 NFQITPQALEAAYKEAESKDMRVRGVLITNP-SNPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIA 256 (442)
Q Consensus 179 ~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~ 256 (442)
.|++.|++.++. .++++| +++| +|++|. +.+.+.+++|.++|++||+++|+||+|.++.+.+..+ .+
T Consensus 210 ---~d~~~le~~l~~-----~~~~~v-i~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~-~~- 278 (439)
T 2oat_A 210 ---NDLPALERALQD-----PNVAAF-MVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL-AV- 278 (439)
T ss_dssp ---SCHHHHHHHTTS-----TTEEEE-EECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GG-
T ss_pred ---CCHHHHHHHhCC-----CCEEEE-EEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcch-hH-
Confidence 278999998841 256554 4556 567896 5688999999999999999999999998765555322 11
Q ss_pred HHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhcCchhHHHHHH
Q 046900 257 EILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLSNKKFTENYIK 333 (442)
Q Consensus 257 ~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~ 333 (442)
+... ....+ .||||.+| +| +|+||+++ ++.+.+.+.. ....+..+++++.++.+.++... + .
T Consensus 279 ~~~~-----~~~Di---~t~sK~l~-~G~~~~G~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~---~--~ 343 (439)
T 2oat_A 279 DYEN-----VRPDI---VLLGKALS-GGLYPVSAVLC-DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLE---E--E 343 (439)
T ss_dssp GGGT-----CCCSE---EEECGGGG-TTSSCCEEEEE-CHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHH---H--T
T ss_pred HHhC-----CCCcE---EEeccccc-CCCCCeEEEEE-CHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHh---h--h
Confidence 1100 01222 29999998 79 99999999 4566555443 22235567888887777775321 1 2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeee--cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEE
Q 046900 334 TNRERLQKRYQMIIEGLRSAGIECL--KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWF 411 (442)
Q Consensus 334 ~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~i 411 (442)
...++++++++++.+.|++.++.+. .+..|+++|++++.... .+..++++.|+++ ||.+.|+ .++++
T Consensus 344 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~g~~~~v~l~~~~~----~~~~~l~~~l~~~-Gv~v~~~------~~~~i 412 (439)
T 2oat_A 344 NLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKD----WDAWKVCLRLRDN-GLLAKPT------HGDII 412 (439)
T ss_dssp THHHHHHHHHHHHHHHHTTSCTTTEEEEEEETTEEEEEECCCSS----CCHHHHHHHHHHT-TEECCBS------SSSEE
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeeeEEEEEEecCcc----HHHHHHHHHHHHC-CeEEecC------CCCEE
Confidence 3566777888889999987654431 23345688888875310 1256888888876 9999984 25789
Q ss_pred EEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 412 RVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 412 Rls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
|++++ ..+++++++++++|++++++
T Consensus 413 Ri~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 413 RFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEECccCCCHHHHHHHHHHHHHHHHh
Confidence 99876 34899999999999998753
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=239.57 Aligned_cols=344 Identities=13% Similarity=0.103 Sum_probs=229.9
Q ss_pred ceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC----cEE
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN----RIV 124 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~----~i~ 124 (442)
+.|+|..++|+.+. .+.+.+....... +..| +.....|+...+..++++.+.+++.+.+| ++++ +|+
T Consensus 45 ~~i~L~a~e~~~~~-~V~eA~~~~l~~~-~~~g---~p~~~~y~~~~~~~~le~~~~~~~a~~~g----~~~~~~~~~V~ 115 (483)
T 1rv3_A 45 VGLELIASENFASR-AVLEALGSCLNNK-YSLG---YPGQRYYGGTEHIDELETLCQKRALQAYG----LDPQCWGVNVQ 115 (483)
T ss_dssp SSEECCTTCCCCCH-HHHHHHTSGGGTC-CCCE---ETTEESSSCCHHHHHHHHHHHHHHHHHTT----CCTTTEEEECC
T ss_pred cCeEEEcCCCCCCH-HHHHHHHHHHhcc-Cccc---CCCccccCcchhHHHHHHHHHHHHHHHhC----CCcccCceEEE
Confidence 56899888887654 4444443322110 0000 01112344444567888888888888877 4443 488
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh--------HhhhcC--cEEEEEecCCCCCCcCCHHHHHHHHHHH
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRD--------LRWRTG--IKIVPIHCDSSNNFQITPQALEAAYKEA 194 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~--------~~~~~G--~~v~~v~~~~~~~~~~d~~~l~~~l~~~ 194 (442)
+++|+ +++..++.++++|||+|++++|.|.++... +.. .| +++++++++++ ++.+|+++|++.+++.
T Consensus 116 ~~sGs-~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~-~G~~~~~v~~~~~~~-~~~iD~d~le~~i~~~ 192 (483)
T 1rv3_A 116 PYSGS-PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISA-TSIFFESMAYKVNPD-TGYIDYDRLEENARLF 192 (483)
T ss_dssp CSSHH-HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSH-HHHHSEEEEECBCTT-TCSBCHHHHHHHHHHH
T ss_pred ECCcH-HHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCccc-ccceEEEEECccccC-CCcCCHHHHHHHHhhc
Confidence 88888 888888899999999999999998877532 232 44 56666665643 5789999999999832
Q ss_pred HhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc-CCCCCCCcccHHHHHhhhcCCCCCcEEEE
Q 046900 195 ESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG-SAFSSSEFVSIAEILEARQYKDSERVHIV 273 (442)
Q Consensus 195 ~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~-~~~~~~~~~s~~~~~~~~~~~~~~~vi~~ 273 (442)
++|+|++ +++||+ .+++ +++|.++|+++|+++|+|++|.. +.+.+....++ . ...+++
T Consensus 193 -----~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~----~-------~~div~ 251 (483)
T 1rv3_A 193 -----HPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF----E-------HCHVVT 251 (483)
T ss_dssp -----CCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG----G-------TCSEEE
T ss_pred -----CCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCC----C-------CCcEEE
Confidence 7888888 899988 7877 78888999999999999999862 22222111111 1 123678
Q ss_pred ecCcccCCCCCceeEEEeecCH--------------HHHHHHHHccc---cCCCcHHHHHHHHHHhcCchhHHHHHHHHH
Q 046900 274 YSLSKDLGLPGFRVGTIYSYND--------------KVVTTARRMSS---FTLISSQTQYLLASMLSNKKFTENYIKTNR 336 (442)
Q Consensus 274 ~S~SK~~g~~G~RiG~i~~~~~--------------~~~~~~~~~~~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 336 (442)
.|+||++ .|+|.||++++++ .+...+..... .++.+.....++...+... ....+++.+
T Consensus 252 ~s~~K~l--~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~--~~~~~~~~~ 327 (483)
T 1rv3_A 252 TTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA--MTPEFKEYQ 327 (483)
T ss_dssp EESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH--TSHHHHHHH
T ss_pred ecCcccC--CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHH--hChhHHHHH
Confidence 9999987 6889999999664 23333332211 1223333344444444321 112356778
Q ss_pred HHHHHHHHHHHHHHHhCCCeeecCC-ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe----CCCCCCCCCCCEE
Q 046900 337 ERLQKRYQMIIEGLRSAGIECLKGN-AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS----PGSSCHCSEPGWF 411 (442)
Q Consensus 337 ~~~~~~~~~l~~~L~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~----pg~~f~~~~~~~i 411 (442)
+++.++++++.+.|.+.|+++..+. .++++|++++.... +..++.+.| ++.||.+. ||..+. ..++++
T Consensus 328 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~g~-----~~~~~~~~L-~~~gI~v~~~~~pg~~~~-~~~~~i 400 (483)
T 1rv3_A 328 RQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGT-----DGGRAEKVL-EACSIACNKNTCPGDKSA-LRPSGL 400 (483)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTC-----CHHHHHHHH-HHTTEECEEECCSSCSCT-TSCCEE
T ss_pred HHHHHHHHHHHHHHHhcCCEeccCCCCCceEEEeccCCCC-----CHHHHHHHH-HhCCcEEecCCCCCCCcC-CCCceE
Confidence 8899999999999998899887654 35678888864210 244555555 55699999 987432 235789
Q ss_pred EEEeecC-C----HHHHHHHHHHHHHHHHH
Q 046900 412 RVCFANM-S----EQTLEVALKRIHNFMQK 436 (442)
Q Consensus 412 Rls~~~~-~----~e~i~~~l~~l~~~l~~ 436 (442)
||+++.. + ++++++++++|.+++..
T Consensus 401 Ris~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 401 RLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp EEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 9999732 3 79999999999999876
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-28 Score=239.02 Aligned_cols=342 Identities=13% Similarity=0.111 Sum_probs=217.2
Q ss_pred CCCCCceeeeeccc--cccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLAE--NQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+||++.+. |.++ ++.+.+.+.+..... ....|+ .....+|++++++++. .
T Consensus 49 d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~----------~~~~~~-~~~~~~l~~~la~~~~---------~ 108 (429)
T 3k28_A 49 DIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERG----------TSFGAP-TEIENKLAKLVIERVP---------S 108 (429)
T ss_dssp ETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHC----------SCCSSC-CHHHHHHHHHHHHHST---------T
T ss_pred ECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhC----------cCcCCC-CHHHHHHHHHHHHhCC---------C
Confidence 34466789998764 4443 355555554432110 012243 3455777777777642 4
Q ss_pred CCcEEEecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCc------------CCHH
Q 046900 120 LNRIVVTAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQ------------ITPQ 185 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~------------~d~~ 185 (442)
+++|++|+|+++++..+++.+.. +++.|++.+|+|.++...+....|..+..++.....++. -|++
T Consensus 109 ~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 188 (429)
T 3k28_A 109 IEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLE 188 (429)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHH
T ss_pred CCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHH
Confidence 78999999999999999987754 678999999999876544332233222222211111111 1789
Q ss_pred HHHHHHHHHHhcCCceeEEEEeCCC-CCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhc
Q 046900 186 ALEAAYKEAESKDMRVRGVLITNPS-NPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQ 263 (442)
Q Consensus 186 ~l~~~l~~~~~~~~~~~~v~l~~P~-NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~ 263 (442)
+|++.+++.. .+++ +++++|+ |++|.+. +.+.+++|.++|++||+++|+||+|.++ ..+.. ...+..
T Consensus 189 ~le~~l~~~~---~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~--~~~~~~---- 257 (429)
T 3k28_A 189 SVKYAFEQFG---DDIA-CVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYN--CGQGYY---- 257 (429)
T ss_dssp HHHHHHHHHG---GGEE-EEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTT--HHHHHH----
T ss_pred HHHHHHHhCC---CCEE-EEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcc--hHHHHh----
Confidence 9999987532 2444 4555564 5566555 6778999999999999999999999987 54422 111121
Q ss_pred CCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH-----ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 046900 264 YKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR-----MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRER 338 (442)
Q Consensus 264 ~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~-----~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 338 (442)
+...-+.||||++| .|+|+||+++ ++.+.+.+.. ....+..+++++.++.+.++..+ ++..+.
T Consensus 258 ----~~~~di~t~sK~~~-~G~~iG~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~------~~~~~~ 325 (429)
T 3k28_A 258 ----GVTPDLTCLGKVIG-GGLPVGAYGG-KAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT------PESYVE 325 (429)
T ss_dssp ----TCCCSEEEECGGGG-TTSCCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC------HHHHHH
T ss_pred ----CCCCceehhhhhhc-CCCCeEEEEE-cHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH------HHHHHH
Confidence 11112457999998 6999999999 5666665543 22235678899999888887543 234455
Q ss_pred HHHHHHHHHHHHHh----CCC-eeecCCceEEEEEecCCccc-------ccChhhHHHHHHHHHHcCcEEEeCCCCCCCC
Q 046900 339 LQKRYQMIIEGLRS----AGI-ECLKGNAGLFCWMNLSPLLE-------EQTREGELALWDSMLHEVKLNISPGSSCHCS 406 (442)
Q Consensus 339 ~~~~~~~l~~~L~~----~g~-~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~ 406 (442)
++++++++.+.|++ .+. ....+.+ .++++.+..... ........++++.|+++ ||.+.||.
T Consensus 326 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----- 398 (429)
T 3k28_A 326 FERKAEMLEAGLRKAAEKHGIPHHINRAG-SMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQ-GVFLPPSQ----- 398 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEET-TEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST-----
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEEEEeec-cEEEEEEecCCcccccccccccHHHHHHHHHHHHHC-CeEEecCC-----
Confidence 55566666666554 333 2333444 466676643110 01112346788888776 99999863
Q ss_pred CCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 407 EPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 407 ~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.+++|+++.. +++++++++++|+++++++
T Consensus 399 -~~~~r~~~~~-t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 399 -FEGLFLSTVH-SDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp -TSCBCCCTTC-CHHHHHHHHHHHHHHHHTC
T ss_pred -CCCEEEECCC-CHHHHHHHHHHHHHHHHHH
Confidence 3468888766 8999999999999998754
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=237.33 Aligned_cols=344 Identities=12% Similarity=0.097 Sum_probs=221.4
Q ss_pred CCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCC-cchHHHHHHHHHHHHHHhCCCCccCC
Q 046900 46 NPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDY-HGLKSFRQAMASFMEQIRGGRAKFDL 120 (442)
Q Consensus 46 ~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~l~~~~~~~~~~~~ 120 (442)
....+||++.+. +.+ +++.+.+.+.+..... . |... .+..++++++++.+.+..+ .++
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~------------~-~~~~~~~~~~~~~~l~~~la~~~~----~~~ 110 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTL------------D-YSPGFQYGHPLSFQLAEKITDLTP----GNL 110 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTC------------S-CCCSSSCCCHHHHHHHHHHHTTSS----TTE
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhC------------C-CccccccCCHHHHHHHHHHHHhCC----CCC
Confidence 345678887654 344 2355555555443210 0 1111 2334556666666665432 467
Q ss_pred CcEEEecChHHHHHHHHHhhcC--------CCCeEEEcCCCCcChHH-hHhhhcC--------------cEEEEEecCCC
Q 046900 121 NRIVVTAGATAANELLTFILAD--------PGDALLVPTPYYPGFDR-DLRWRTG--------------IKIVPIHCDSS 177 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~l~~--------~gd~Vl~~~p~y~~~~~-~~~~~~G--------------~~v~~v~~~~~ 177 (442)
++|++|+|+++++..+++++.. ++|.|++.+|+|.++.. .+.. .| +..+++|....
T Consensus 111 ~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~~~~~~~v~~~~~~~ 189 (449)
T 3a8u_X 111 NHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSL-GGVNGNRKLFGQPMQDVDHLPHTLLAS 189 (449)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHH-CCCHHHHTTTCCCSCSEEEECCCCCGG
T ss_pred CEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhc-cCChhhccccCCCCCCCeEecCCcccc
Confidence 8999999999999999988764 67999999999988643 3332 33 33333332111
Q ss_pred CCC-cCC--------HHHHHHHHHHHHhcCCceeEEEEeCCC-CCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 178 NNF-QIT--------PQALEAAYKEAESKDMRVRGVLITNPS-NPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 178 ~~~-~~d--------~~~l~~~l~~~~~~~~~~~~v~l~~P~-NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
.+| .+| ++.|++.+++.. ..+++ +++++|+ ||||. +.+.+.+++|.++|++||+++|+||+|.++.
T Consensus 190 ~~~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g 266 (449)
T 3a8u_X 190 NAYSRGMPKEGGIALADELLKLIELHD--ASNIA-AVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFG 266 (449)
T ss_dssp GTTCSSSCSSSHHHHHHHHHHHHHHHC--GGGEE-EEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred CccccCChHHHHHHHHHHHHHHHHhcC--CCCEE-EEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcc
Confidence 111 246 899999987521 02454 5566775 77997 5678999999999999999999999998765
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHc-----------cccCCCcHHH
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRM-----------SSFTLISSQT 314 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~-----------~~~~~~s~~~ 314 (442)
+.+.. ..+..... ...+ .||||.++ +| +|+||++++ +.+.+.+... ...+..++++
T Consensus 267 ~~g~~-~~~~~~~~------~~di---~s~sK~l~-~G~~~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~ 334 (449)
T 3a8u_X 267 RTGSM-FGADSFGV------TPDL---MCIAKQVT-NGAIPMGAVIAS-TEIYQTFMNQPTPEYAVEFPHGYTYSAHPVA 334 (449)
T ss_dssp TTSSS-SHHHHHTC------CCSE---EEECGGGG-TTSSCCEEEEEE-HHHHHHHHTCSSCTTSCSSCCCCTTTTCHHH
T ss_pred ccCcc-hhhhhcCC------CCCE---EEEccccc-CCCCceEEEEEC-HHHHHHhhccCcccccccccccCCCcccHHH
Confidence 54432 12221111 1222 28999998 68 999999994 5666666542 1224567788
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-Ceee--cCCceEEEEEecCCcccccChhhHHHHHHHHHH
Q 046900 315 QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAG-IECL--KGNAGLFCWMNLSPLLEEQTREGELALWDSMLH 391 (442)
Q Consensus 315 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 391 (442)
+.++.+.++.. ++ ....++++++++++.+.|++.+ +... .+..|+++|++++....... .+..++++.|++
T Consensus 335 ~aa~~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~-~~~~~~~~~l~~ 408 (449)
T 3a8u_X 335 CAAGLAALCLL---QK--ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAI-VRPFEAGMALWK 408 (449)
T ss_dssp HHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCccccc-ccHHHHHHHHHH
Confidence 88877777532 11 1345566777777778877642 3221 23345789999875321100 023468888887
Q ss_pred cCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 392 EVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 392 ~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
+ ||.+.|+ + +++||++. ..+++++++++++|++++++
T Consensus 409 ~-Gv~v~~~------g-~~iRis~~~~~t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 409 A-GFYVRFG------G-DTLQFGPTFNSKPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp H-TEECEEE------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred C-CcEEecC------C-CEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 7 9999986 1 68999965 34899999999999999865
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-28 Score=238.47 Aligned_cols=340 Identities=13% Similarity=0.094 Sum_probs=214.2
Q ss_pred CCCCceeeeeccc--cccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC
Q 046900 45 TNPSGVIQMGLAE--NQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120 (442)
Q Consensus 45 ~~~~~~i~l~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 120 (442)
.....+|||+.+. ++++ ++.+.+.+.+.... ...|.. ..+++.++++++.+.++ ++
T Consensus 49 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~------------~~~~~~---~~~~~~~la~~l~~~~~-----~~ 108 (427)
T 3fq8_A 49 VDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEK------------GTSFGA---PCALENVLAEMVNDAVP-----SI 108 (427)
T ss_dssp TTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTT------------CSCCSS---CCHHHHHHHHHHHHHST-----TC
T ss_pred CCCCEEEECCCchhhhccCCCCHHHHHHHHHHHHh------------CCCcCC---CCHHHHHHHHHHHHhCC-----CC
Confidence 4456789998775 4443 45555555543221 112322 34677777777776543 47
Q ss_pred CcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCcE-------------------EEEEecCCCCC
Q 046900 121 NRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGIK-------------------IVPIHCDSSNN 179 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~~-------------------v~~v~~~~~~~ 179 (442)
++|++|+|+++++..+++... ..++.|++.+|+|.++...+....|.. ++.++.+
T Consensus 109 ~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 184 (427)
T 3fq8_A 109 EMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN---- 184 (427)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT----
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC----
Confidence 899999999999999984331 245789999999987554332111211 2233321
Q ss_pred CcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCC-HHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHH
Q 046900 180 FQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQ-RSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEI 258 (442)
Q Consensus 180 ~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~-~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~ 258 (442)
|+++|++.+++. ..++++|+++.++|++|.+.+ .+.+++|.++|++||++||+||+|.++ ..+.. .. .+.
T Consensus 185 ---d~~~le~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~-~~-~~~ 255 (427)
T 3fq8_A 185 ---DLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYG-GV-QEK 255 (427)
T ss_dssp ---CHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTT-HH-HHH
T ss_pred ---CHHHHHHHHHhC---CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcc-hh-hHh
Confidence 789999999762 225555555555677887665 555999999999999999999999987 44432 11 111
Q ss_pred HhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH-----ccccCCCcHHHHHHHHHHhcCchhHHHHHH
Q 046900 259 LEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR-----MSSFTLISSQTQYLLASMLSNKKFTENYIK 333 (442)
Q Consensus 259 ~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~-----~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~ 333 (442)
. +...-+.||||+++ +|+|+||+++ ++.+.+.+.. ....+..+++++.++.+.++.... ++..+
T Consensus 256 ~--------~~~~di~t~sK~~~-~G~~~G~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-~~~~~ 324 (427)
T 3fq8_A 256 F--------GVTPDLTTLGKIIG-GGLPVGAYGG-KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGTYE 324 (427)
T ss_dssp T--------TCCCSEEEECGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHH
T ss_pred c--------CCCCChhhhhhhhh-CCcceEEEEE-cHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh-cCHHH
Confidence 1 11122468999998 8999999998 6677666553 222345678888888777752111 11222
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccc-------cChhhHHHHHHHHHHcCcEEEeCCCCCCCC
Q 046900 334 TNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEE-------QTREGELALWDSMLHEVKLNISPGSSCHCS 406 (442)
Q Consensus 334 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~ 406 (442)
+.++..+..++.+.+.+.+.++....+..|+++|++++..... .......++++.|+++ ||.+.|+..
T Consensus 325 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gi~v~~~~~---- 399 (427)
T 3fq8_A 325 YLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQF---- 399 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSSTT----
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHC-CcEEecCCC----
Confidence 2333333333344444444454444455677889988652110 1112246788888777 999998653
Q ss_pred CCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 407 EPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 407 ~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
..+|+++.. +++++++++++|++++++
T Consensus 400 --~r~~~~~~~-t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 400 --EAGFTSLAH-TEEDIDATLAAARTVMSA 426 (427)
T ss_dssp --SCEECCTTC-CHHHHHHHHHHHHHHHHH
T ss_pred --CCEEeeCcC-CHHHHHHHHHHHHHHHHh
Confidence 246666655 899999999999998864
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=232.72 Aligned_cols=287 Identities=16% Similarity=0.175 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---hcCcEEEEEecCC
Q 046900 100 FRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---RTGIKIVPIHCDS 176 (442)
Q Consensus 100 lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~~G~~v~~v~~~~ 176 (442)
.++++++.+.+..| .+++++++|+++++..++.+++++||.|+++.|+|..+...+.. ..|++++.++.+
T Consensus 82 ~~~~l~~~la~~~g------~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~- 154 (414)
T 3ndn_A 82 TVSVFEERLRLIEG------APAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD- 154 (414)
T ss_dssp HHHHHHHHHHHHHT------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred HHHHHHHHHHHHHC------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-
Confidence 44444444444333 46789999999999999999999999999999999987766531 389999999864
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHH
Q 046900 177 SNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIA 256 (442)
Q Consensus 177 ~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~ 256 (442)
|++.|++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+||+|+...+.. ++
T Consensus 155 ------d~~~l~~ai~~------~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~----~~- 214 (414)
T 3ndn_A 155 ------DLSQWERALSV------PTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQQ----GF- 214 (414)
T ss_dssp ------CHHHHHHHTSS------CCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC----CG-
T ss_pred ------CHHHHHHhcCC------CCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccCC----ch-
Confidence 78999998864 7899999999999999987 7788999999999999999998432211 11
Q ss_pred HHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcc-cc-CCCcHHHHHHHHHHhcCchhHHHHHH
Q 046900 257 EILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMS-SF-TLISSQTQYLLASMLSNKKFTENYIK 333 (442)
Q Consensus 257 ~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~-~~-~~~s~~~q~~~~~~l~~~~~~~~~~~ 333 (442)
. .+..+++.|+||.+|.+| +++||++++++.+.+.++... .. ...++....++...++ . +.
T Consensus 215 ---~------~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~---~----l~ 278 (414)
T 3ndn_A 215 ---P------LGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE---T----LA 278 (414)
T ss_dssp ---G------GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG---G----HH
T ss_pred ---h------cCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---H----HH
Confidence 1 134588999999999778 899999995544443444322 22 2335554444444333 2 33
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCee-ecC----------------CceEEEEEecCCcccccChhhHHHHHHHHHHcCcE
Q 046900 334 TNRERLQKRYQMIIEGLRSA-GIEC-LKG----------------NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKL 395 (442)
Q Consensus 334 ~~~~~~~~~~~~l~~~L~~~-g~~~-~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi 395 (442)
...++..++++.+.+.|++. ++.. ..| ..|.++|+.++.... ...+....+.+.+. ..++
T Consensus 279 ~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~-~~~~~~~~~~~~l~-~~~~ 356 (414)
T 3ndn_A 279 IRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED-VAKQRAFEVLDKMR-LIDI 356 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG-GHHHHHHHHHHHCS-SSEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc-ccHHHHHHHHHhCc-cceE
Confidence 34455667778888888775 3332 212 146689999875200 00123556666663 4488
Q ss_pred EEeCCCCCCC---------------------CCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 396 NISPGSSCHC---------------------SEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 396 ~v~pg~~f~~---------------------~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
.+.+|..+.. ..++++|||++. |+.+.+++.|.+++
T Consensus 357 ~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~---e~~~dli~dl~~al 413 (414)
T 3ndn_A 357 SNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL---EDTDDLIADIDRAL 413 (414)
T ss_dssp CSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred cCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHhh
Confidence 8888875532 235789999986 44566677776654
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=237.84 Aligned_cols=341 Identities=13% Similarity=0.066 Sum_probs=219.9
Q ss_pred CCC--ceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 46 NPS--GVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 46 ~~~--~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
... .+|||..+ .+.++ ++.+.+.+.+.... ...+....+..+...++++.+.+..+ ..
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~------------~~~~~~~~~~~~~~~~L~e~la~~~~----~~ 134 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRV------------MNHVMFGGLTHEPAARLAKLLVDITP----AG 134 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH------------CSCCCSSSEECHHHHHHHHHHHHHSS----TT
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHh------------ccCccccccCCHHHHHHHHHHHHhCC----CC
Confidence 455 78898876 45553 45555554433211 00111011123444455555554432 45
Q ss_pred CCcEEEecChHHHHHHHHHhhcC-------CC-CeEEEcCCCCcChHHhHhhhc-C-------------cEEEEEecCCC
Q 046900 120 LNRIVVTAGATAANELLTFILAD-------PG-DALLVPTPYYPGFDRDLRWRT-G-------------IKIVPIHCDSS 177 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~-------~g-d~Vl~~~p~y~~~~~~~~~~~-G-------------~~v~~v~~~~~ 177 (442)
.++|++|+|+++++..+++++.. +| +.|++.+++|.++...+.. . + ..+..++....
T Consensus 135 ~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~ 213 (457)
T 3tfu_A 135 LDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMS-ICDPHGGMHSLWTDVLAAQVFAPQVPR 213 (457)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHT-TSCCC----------CCCCEEECCCCS
T ss_pred cCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhc-ccCCcccccccccCCCCCceEecCCCc
Confidence 67999999999999999988864 55 5899999999876544331 2 1 12223333222
Q ss_pred CCCcCCHHHHHHHHHHHHhcCCceeEEEEeC-CCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccH
Q 046900 178 NNFQITPQALEAAYKEAESKDMRVRGVLITN-PSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSI 255 (442)
Q Consensus 178 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~-P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~ 255 (442)
.....|++.|++.+++.. .++++|++.. ++||+|.++ +.+.+++|.++|++||+++|+||+|.++...+..+ ..
T Consensus 214 ~~~~~d~~~le~~l~~~~---~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~-a~ 289 (457)
T 3tfu_A 214 DYDPAYSAAFEAQLAQHA---GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF-AA 289 (457)
T ss_dssp SCCHHHHHHHHHHHHHHG---GGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-TH
T ss_pred ccCHHHHHHHHHHHHhCC---CCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchh-Hh
Confidence 111247899999987531 2677777776 789999876 77779999999999999999999999876655432 22
Q ss_pred HHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH-------ccccCCCcHHHHHHHHHHhcCchh
Q 046900 256 AEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR-------MSSFTLISSQTQYLLASMLSNKKF 327 (442)
Q Consensus 256 ~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~-------~~~~~~~s~~~q~~~~~~l~~~~~ 327 (442)
..... ...++ ||||+++ .| +|+||+++ ++.+.+.+.. ....+..+++++.++.+.|+...
T Consensus 290 ~~~~~------~pdii---t~sK~l~-gG~~~lG~v~~-~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~- 357 (457)
T 3tfu_A 290 DHAGV------SPDIM---CVGKALT-GGYLSLAATLC-TADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLL- 357 (457)
T ss_dssp HHHTC------CCSEE---EECGGGG-TTSSCCEEEEE-EHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHH-
T ss_pred HhcCC------CceEE---EEChhhh-CCCcceEEEEE-cHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHh-
Confidence 22211 12333 8999997 56 79999999 5677776641 12335678888888877775211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCC
Q 046900 328 TENYIKTNRERLQKRYQMIIEGLRSA----GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSC 403 (442)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f 403 (442)
+ +...+.++++++++.+.|+++ ++....+. |+|++++++... +..++++.|+++ ||.+.|+
T Consensus 358 --~--~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~-G~~~~i~l~~~~------~~~~~~~~l~~~-Gv~v~~~--- 422 (457)
T 3tfu_A 358 --G--QDWRTRITELAAGLTAGLDTARALPAVTDVRVC-GAIGVIECDRPV------DLAVATPAALDR-GVWLRPF--- 422 (457)
T ss_dssp --T--SCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEEC-SSCEEEEESSCC------CHHHHHHHHHHT-TEECCCB---
T ss_pred --h--hHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecC-CeEEEEEECCcc------cHHHHHHHHHHC-CeEEEec---
Confidence 0 123344555556666666553 33333344 457888886532 257888899887 9999873
Q ss_pred CCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 404 HCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 404 ~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
.+++||++. ..+++++++++++|++++++..
T Consensus 423 ----~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 423 ----RNLVYAMPPYICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp ----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred ----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 258999865 3389999999999999987643
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-28 Score=237.92 Aligned_cols=343 Identities=13% Similarity=0.107 Sum_probs=211.5
Q ss_pred ceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecC
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAG 128 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G 128 (442)
+.+.+..++|.. ++.+.+.+.+..... . + ........|+.......+++...+++.+.++ +++++|++++|
T Consensus 31 ~~~~~~~~~n~~-~~~v~~a~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~~v~~~sG 101 (420)
T 3gbx_A 31 EHIELIASENYT-SPRVMQAQGSQLTNK-Y--A-EGYPGKRYYGGCEYVDVVEQLAIDRAKELFG----ADYANVQPHSG 101 (420)
T ss_dssp HSEECCTTCCCC-CHHHHHHHTSGGGGC-C--C---------------CHHHHHHHHHHHHHHHT----CSEEECCCSSH
T ss_pred cceeeeccCCCC-CHHHHHHHHHHHhcc-c--c-cCCCCccccCchHHHHHHHHHHHHHHHHHhC----CCCceeEecCc
Confidence 346676677764 445555554432110 0 0 0000111233323334445444456666554 56677777777
Q ss_pred hHHHHHHHHHhhcCCCCeEEEcCCCCcChH---HhHhh-hcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 129 ATAANELLTFILADPGDALLVPTPYYPGFD---RDLRW-RTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 129 ~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~---~~~~~-~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
++++..++.+++++||.|+++.|+|..+. ..... ..+...++++.+ .++.+|++.|++++++. ++++|
T Consensus 102 -s~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~-----~~~~v 173 (420)
T 3gbx_A 102 -SQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID--ESGKIDYDEMAKLAKEH-----KPKMI 173 (420)
T ss_dssp -HHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEEC--TTCSCCHHHHHHHHHHH-----CCSEE
T ss_pred -HHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCC--ccCCcCHHHHHHHHHhc-----CCeEE
Confidence 78999999999999999999999998743 11111 134566666665 35679999999999863 57899
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
++++|+||+ ..+ +++|.++|++||+++|+||+|....+....+.... ....+++.|+||+++ |
T Consensus 174 ~~~~~~~~~--~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~----------~~~di~~~s~sK~~~--g 236 (420)
T 3gbx_A 174 IGGFSAYSG--VVD---WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPV----------PHAHVVTTTTHKTLA--G 236 (420)
T ss_dssp EECCTTCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCST----------TTSSEEEEESSGGGC--S
T ss_pred EEecCccCC--ccC---HHHHHHHHHHcCCEEEEECCcchhceecccCCccc----------ccCCEEEeecccCCC--C
Confidence 999999975 455 88999999999999999999863222111111110 123378999999984 5
Q ss_pred ceeEEEeecC--HHHHHHHHHcccc---CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 046900 285 FRVGTIYSYN--DKVVTTARRMSSF---TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK 359 (442)
Q Consensus 285 ~RiG~i~~~~--~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 359 (442)
.+.||+++++ +.+.+.+...... +..+...+.++...+.. ...+++++.++++.++++++.+.|.+.|+++..
T Consensus 237 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 314 (420)
T 3gbx_A 237 PRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKE--AMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVS 314 (420)
T ss_dssp CSCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHH--TTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGG
T ss_pred CCceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHH--HHhHhHHHHHHHHHHHHHHHHHHHHhcCCeecc
Confidence 5669999965 3666665543222 12223333333323321 112345778888999999999999988888865
Q ss_pred C-CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeC-------CCCCCCCCCCEEEEEeec-----CCHHHHHHH
Q 046900 360 G-NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISP-------GSSCHCSEPGWFRVCFAN-----MSEQTLEVA 426 (442)
Q Consensus 360 ~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~p-------g~~f~~~~~~~iRls~~~-----~~~e~i~~~ 426 (442)
+ ..++++|+.++.... +...+.+.| +++||.+.| |..|+ +..+||++.. +++++++++
T Consensus 315 ~~~~~~~~~~~~~~~~~-----~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~---~~~iRi~~~~~~~~~~~~~~i~~~ 385 (420)
T 3gbx_A 315 GGTENHLFLLDLVDKNL-----TGKEADAAL-GRANITVNKNSVPNDPKSPFV---TSGIRIGSPAVTRRGFKEAEVKEL 385 (420)
T ss_dssp GSCSSSEEEEECGGGTC-----CHHHHHHHH-HHTTEECEEECCTTCSSCTTT---CSEEEEECHHHHHTTCCHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCC-----CHHHHHHHH-HHCCcEeccccCCCCccccCC---CcceEEecchhcccCCCHHHHHHH
Confidence 3 456688888754211 244555555 555999998 33332 3459999862 357899999
Q ss_pred HHHHHHHHHH
Q 046900 427 LKRIHNFMQK 436 (442)
Q Consensus 427 l~~l~~~l~~ 436 (442)
++.|++++++
T Consensus 386 ~~~l~~~l~~ 395 (420)
T 3gbx_A 386 AGWMCDVLDN 395 (420)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999998765
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=227.20 Aligned_cols=285 Identities=21% Similarity=0.215 Sum_probs=200.6
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----Hhhhc
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD----LRWRT 165 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~~ 165 (442)
.|+. .+..+++++++++++ .+ +.|++++| ++++..++.+++++||.|+++.|+|...... ++ ..
T Consensus 48 ~~~~-~~~~~l~~~la~~~~--------~~-~~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~-~~ 115 (386)
T 1cs1_A 48 RRGN-PTRDVVQRALAELEG--------GA-GAVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAK-RG 115 (386)
T ss_dssp TTCC-HHHHHHHHHHHHHHT--------CS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHT-TT
T ss_pred CCCC-ccHHHHHHHHHHHhC--------CC-cEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHH-hc
Confidence 4443 467899999999986 22 56777666 8999999999999999999999999875443 34 37
Q ss_pred CcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcC
Q 046900 166 GIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGS 245 (442)
Q Consensus 166 G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~ 245 (442)
|++++.++.+ |++.+++.+++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|..+
T Consensus 116 g~~~~~~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~ 179 (386)
T 1cs1_A 116 CYRVLFVDQG-------DEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSP 179 (386)
T ss_dssp SCEEEEECTT-------CHHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCT
T ss_pred CCEEEEeCCC-------CHHHHHHhhcc------CCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCccc
Confidence 9999988753 78999999874 7899999999999999997 788889999999999999999976
Q ss_pred CCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee-EEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHh
Q 046900 246 AFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV-GTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASML 322 (442)
Q Consensus 246 ~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri-G~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l 322 (442)
.+.. +. . .+..+++.|+||.++.+|.|+ ||++++++.+.+.+...... +..+++.+.++...+
T Consensus 180 ~~~~----~~----~------~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l 245 (386)
T 1cs1_A 180 ALQN----PL----A------LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGL 245 (386)
T ss_dssp TTCC----GG----G------GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred ccCC----cc----c------cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcc
Confidence 5431 11 1 145688999999998899997 99999665666665543332 345677777665555
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-Ceee-c-----------------CCceEEEEEecCCcccccChhhHH
Q 046900 323 SNKKFTENYIKTNRERLQKRYQMIIEGLRSAG-IECL-K-----------------GNAGLFCWMNLSPLLEEQTREGEL 383 (442)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~-~-----------------~~~g~~~~~~~~~~~~~~~~~~~~ 383 (442)
+. +....+.+.++++.+.+.|+++. +... . ..++ ++.+.++.. ..
T Consensus 246 ~~-------~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~ 309 (386)
T 1cs1_A 246 RT-------LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGA-MLSFELDGD--------EQ 309 (386)
T ss_dssp TT-------HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCS-EEEEEESSC--------HH
T ss_pred cH-------HHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCce-EEEEEECCC--------HH
Confidence 42 23344556667777777776642 2111 1 1244 555566531 23
Q ss_pred HHHHHHHHcCcEEEeCCCCCC-------------------------CCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 384 ALWDSMLHEVKLNISPGSSCH-------------------------CSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 384 ~l~~~l~~~~gi~v~pg~~f~-------------------------~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.+...| ++.||.+++++ |+ +..++++||+++. ++.++.+++|.+++++.
T Consensus 310 ~~~~~l-~~~gi~~~~~~-~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~---~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 310 TLRRFL-GGLSLFTLAES-LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRAA 383 (386)
T ss_dssp HHHHHH-HTCSSSEEBSC-CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhCCcceEccc-CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc---CCHHHHHHHHHHHHHHh
Confidence 444444 55699887432 11 1125799999985 34566666666666654
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=236.43 Aligned_cols=324 Identities=14% Similarity=0.190 Sum_probs=216.0
Q ss_pred CCCceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccC-CCcchHHHHHHHHHHHHHHhCCCCccCCCcEE
Q 046900 46 NPSGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQ-DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 46 ~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 124 (442)
+..++++++.+.+.++.... +.+.+... ...|+ +..+..++|+++|++++ .++++
T Consensus 20 ~~~~~~~l~~~~p~~~~~~~-~a~~~~~~-------------~~~~~~~~~~~~~l~~~la~~~~----------~~~~i 75 (391)
T 3dr4_A 20 HMSDLPRISVAAPRLDGNER-DYVLECMD-------------TTWISSVGRFIVEFEKAFADYCG----------VKHAI 75 (391)
T ss_dssp --------CCCCCCCCSSHH-HHHHHHHH-------------HTCCSSCSHHHHHHHHHHHHHHT----------CSEEE
T ss_pred hcCCCceeccCCCCCCHHHH-HHHHHHHH-------------cCCccCCChHHHHHHHHHHHHhC----------CCcEE
Confidence 34577888888877764332 22222210 12354 56788999999999986 23788
Q ss_pred EecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 125 VTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
+++|+++++..++.++ +++||.|+++.|+|+.+...+.. .|++++.++++++ ++.+|++.|++.+++ ++++
T Consensus 76 ~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~-~g~~~~~~~~~~~-~~~~d~~~l~~~~~~------~~~~ 147 (391)
T 3dr4_A 76 ACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTY-CGATPVLVDNDPR-TFNLDAAKLEALITP------RTKA 147 (391)
T ss_dssp EESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHHH-TTCEEEEECBCTT-TCSBCGGGSGGGCCT------TEEE
T ss_pred EeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHHHH-CCCEEEEEecCcc-ccCcCHHHHHHhcCC------CceE
Confidence 8999999999999999 89999999999999999998884 9999999998753 578999999988754 6776
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC-CCCCCcccHHHHHhhhcCCCCCcEEEEecCc--ccC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA-FSSSEFVSIAEILEARQYKDSERVHIVYSLS--KDL 280 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~-~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~S--K~~ 280 (442)
|+ |+||||.+.+ +++|+++|+++|+++|+|++|+... +.+..... + .+ +.+.||| |.+
T Consensus 148 v~---~~n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~---~--------~d--i~~~S~s~~K~l 208 (391)
T 3dr4_A 148 IM---PVHLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGKKSGS---L--------GD--CATFSFFGNAII 208 (391)
T ss_dssp EC---CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS---S--------SS--EEEEECBTTSSS
T ss_pred EE---EECCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECCeeecc---c--------CC--EEEEECCCCCcC
Confidence 66 6789999887 7778889999999999999998532 22211000 0 12 5667766 766
Q ss_pred CCCCceeEEEeecCHHHHHHHHHcccc----------------CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 046900 281 GLPGFRVGTIYSYNDKVVTTARRMSSF----------------TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQ 344 (442)
Q Consensus 281 g~~G~RiG~i~~~~~~~~~~~~~~~~~----------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 344 (442)
+|.+.||++++++.+.+.++..... +.++.+...+....+ +.+++..++.++.++
T Consensus 209 --~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~-------~~~~~~~~~~~~~~~ 279 (391)
T 3dr4_A 209 --TTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQL-------ERVDEHLAARERVVG 279 (391)
T ss_dssp --CCBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHH-------HTHHHHHHHHHHHHH
T ss_pred --CcCCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4467999999777777666543321 122222222222111 123445566666777
Q ss_pred HHHHHHHhCCCeeecC------Cce-EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCC---CC--------C
Q 046900 345 MIIEGLRSAGIECLKG------NAG-LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSC---HC--------S 406 (442)
Q Consensus 345 ~l~~~L~~~g~~~~~~------~~g-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f---~~--------~ 406 (442)
++.+.|.+.|+++..+ ..+ +.+++.++.... .+..++.+.|.++ ||.+.+|... .+ .
T Consensus 280 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~L~~~-GI~v~~~~~p~~~~~~~~~~~~~~ 354 (391)
T 3dr4_A 280 WYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLS----TTRDQVIKDLDAL-GIESRPVFHPMHIMPPYAHLATDD 354 (391)
T ss_dssp HHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECSSCS----SCHHHHHHHHHHT-TCCCEECCCCGGGSGGGGGGCCTT
T ss_pred HHHHHhhcCCccccCcCCCCCCcceeEEEEEEECCccc----hhHHHHHHHHHHC-CCceeecCCccccChhhhhcCcCC
Confidence 8888888777776544 122 235666654100 1256788888776 9999987511 00 0
Q ss_pred -------CCCEEEEEee-cCCHHHHHHHHHHHHHHH
Q 046900 407 -------EPGWFRVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 407 -------~~~~iRls~~-~~~~e~i~~~l~~l~~~l 434 (442)
....+||++. .+++++++++++.|++++
T Consensus 355 ~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 355 LKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp CHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 1246899886 448999999999998754
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-27 Score=230.68 Aligned_cols=192 Identities=21% Similarity=0.266 Sum_probs=147.9
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----Hhhhc
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD----LRWRT 165 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~~ 165 (442)
.|+. .+..+||+++|++++ . .+.|++++| ++++..++. ++++||+|+++.|+|...... ++ ..
T Consensus 63 r~~~-p~~~~l~~~la~~~g--------~-~~~i~~~sG-~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~-~~ 129 (403)
T 3cog_A 63 RSGN-PTRNCLEKAVAALDG--------A-KYCLAFASG-LAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVAS-EF 129 (403)
T ss_dssp ---C-HHHHHHHHHHHHHHT--------C-SEEEEESCH-HHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGG-GG
T ss_pred CCCC-chHHHHHHHHHHHhC--------C-CcEEEECCH-HHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHH-Hc
Confidence 4543 467899999999985 2 256777666 589999998 889999999999999875443 34 38
Q ss_pred CcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcC-cEEEEeccCCc
Q 046900 166 GIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKN-IHLVSDEIYSG 244 (442)
Q Consensus 166 G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~-~~vi~De~y~~ 244 (442)
|++++.++++ |++.+++.+++ ++++|++++|+||||.+++ +++|+++|+++| +++|+|++|+.
T Consensus 130 G~~v~~v~~~-------d~~~l~~~i~~------~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~ 193 (403)
T 3cog_A 130 GLKISFVDCS-------KIKLLEAAITP------ETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMS 193 (403)
T ss_dssp TCEEEEECTT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTC
T ss_pred CCEEEEECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcc
Confidence 9999999864 78899988764 7899999999999999998 888899999999 99999999997
Q ss_pred CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHH
Q 046900 245 SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASM 321 (442)
Q Consensus 245 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~ 321 (442)
+.+.. +. . .+..++++|+||.++.+| +|+||++++++.+.+.++..... ...+++.+.++...
T Consensus 194 ~~~~~-~~-~------------~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~ 259 (403)
T 3cog_A 194 PYFQR-PL-A------------LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRG 259 (403)
T ss_dssp TTTCC-TT-T------------TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred cccCC-cc-c------------cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhh
Confidence 65421 11 1 145688999999998766 47999999666776666543332 33577888877777
Q ss_pred hcC
Q 046900 322 LSN 324 (442)
Q Consensus 322 l~~ 324 (442)
++.
T Consensus 260 l~~ 262 (403)
T 3cog_A 260 LKT 262 (403)
T ss_dssp HTT
T ss_pred hhH
Confidence 764
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=233.46 Aligned_cols=302 Identities=12% Similarity=0.101 Sum_probs=206.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH-h--HhhhcC--cEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR-D--LRWRTG--IKIVP 171 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~-~--~~~~~G--~~v~~ 171 (442)
..++++.+.+.+.+.+| .+++.|++++| ++++..++.+++++||.|+++.|+|+.+.. . +.. .| .+++.
T Consensus 67 ~~~l~~~~r~~la~~~g----~~~~~i~~~sG-t~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 140 (405)
T 2vi8_A 67 VDIVEELARERAKQLFG----AEHANVQPHSG-AQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNF-SGVQYNFVA 140 (405)
T ss_dssp HHHHHHHHHHHHHHHHT----CSEEECCCSSH-HHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSH-HHHHSEEEE
T ss_pred HHHHHHHHHHHHHHHhC----CCceEEEecCc-HHHHHHHHHHhcCCCCEEEEecccccchhcccchhhh-ccceeEEEe
Confidence 45566544444444444 34555556676 999999999999999999999999988753 1 122 34 48888
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
+++++ .++.+|++.|++.+++. +++++++ +|+|+ |...+ +++|.++|++||+++|+||+|+........
T Consensus 141 ~~~~~-~~~~~d~~~l~~~i~~~-----~~~~v~~-~~~~~-~~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~ 209 (405)
T 2vi8_A 141 YGVDP-ETHVIDYDDVREKARLH-----RPKLIVA-AAAAY-PRIID---FAKFREIADEVGAYLMVDMAHIAGLVAAGL 209 (405)
T ss_dssp ECBCT-TTCSBCHHHHHHHHHHH-----CCSEEEE-CCSSC-CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTS
T ss_pred ccccc-ccCCcCHHHHHHHHHhc-----CCeEEEE-eCCCC-CccCC---HHHHHHHHHHcCCEEEEEccccccccccCc
Confidence 88753 35779999999999752 5677665 55554 34444 789999999999999999999842221111
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHHHcccc---CCCcHHHHHHHHHHhcCchh
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARRMSSF---TLISSQTQYLLASMLSNKKF 327 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~ 327 (442)
... .+ . ...++++|+||.++ .+| ||++++ +.+.+.++..... +..+.....++.+.++..
T Consensus 210 ~~~--~~-~-------~~di~~~s~sK~~~g~~g---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~-- 273 (405)
T 2vi8_A 210 HPN--PV-P-------YAHFVTTTTHKTLRGPRG---GMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEA-- 273 (405)
T ss_dssp SCC--ST-T-------TCSEEEEESSSTTCCCSC---EEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--
T ss_pred CCC--cc-c-------cCCEEEEeccccCCCCCC---eEEEEc-HHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHH--
Confidence 111 01 1 11277899999996 555 999994 6666666554322 222333333334445421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC-CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCC----
Q 046900 328 TENYIKTNRERLQKRYQMIIEGLRSAGIECLKG-NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSS---- 402 (442)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~---- 402 (442)
...++++.++.++++++++.+.|++.|+++..+ .+++++|+.++.... +..++.+.|.++ ||.+.||..
T Consensus 274 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~-gi~v~~g~~~~~~ 347 (405)
T 2vi8_A 274 LQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQL-----TGKTAEKVLDEV-GITVNKNTIPYDP 347 (405)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC-----CHHHHHHHHHHH-TEECEEECCTTCS
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCCCCceEEEEEccCCCC-----CHHHHHHHHHHc-CceeccCcCcccc
Confidence 123567788899999999999999889888765 467899999864210 255677777565 999999863
Q ss_pred CCCCCCCEEEEEeec-----CCHHHHHHHHHHHHHHHHHH
Q 046900 403 CHCSEPGWFRVCFAN-----MSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 403 f~~~~~~~iRls~~~-----~~~e~i~~~l~~l~~~l~~~ 437 (442)
++...++++|++++. ++++++++++++|++++++.
T Consensus 348 ~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 348 ESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp SCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence 332335789999983 57999999999999988653
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=225.97 Aligned_cols=282 Identities=15% Similarity=0.165 Sum_probs=203.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhH----hhhcCcEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDL----RWRTGIKIVP 171 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~~G~~v~~ 171 (442)
...+|++++|++++ .+++++++|+++++..++.+++++||+|+++.|+|+.+...+ . ..|++++.
T Consensus 67 ~~~~l~~~la~~~g----------~~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~-~~g~~~~~ 135 (392)
T 3qhx_A 67 TRTALEAALAAVED----------AAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFT-GWNVEYTP 135 (392)
T ss_dssp HHHHHHHHHHHHTT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGG-GGTCEEEE
T ss_pred HHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHH-hcCcEEEE
Confidence 45778888888764 347899999999999999999999999999999998776655 4 37999999
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
++.+ |++.+++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.... ..+
T Consensus 136 v~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~-~~~ 198 (392)
T 3qhx_A 136 VALA-------DLDAVRAAIRP------TTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPAL-QQP 198 (392)
T ss_dssp ECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTT-CCG
T ss_pred eCCC-------CHHHHHHhhCC------CCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCccccc-CCh
Confidence 9864 78999998864 8899999999999999988 88899999999999999999986432 111
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhH
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFT 328 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~ 328 (442)
. .+ +..+++.|+||.+|.+| +|+||++++++.+.+.+..... ....++..+.++...++..
T Consensus 199 ---~-~~---------~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l--- 262 (392)
T 3qhx_A 199 ---L-SL---------GADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTL--- 262 (392)
T ss_dssp ---G-GG---------TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH---
T ss_pred ---H-Hh---------CCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH---
Confidence 1 11 34588999999999777 8999999976677666654333 2445677777777766642
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCeee-cC----------------CceEEEEEecCCcccccChhhHHHHHHHHH
Q 046900 329 ENYIKTNRERLQKRYQMIIEGLRSA-GIECL-KG----------------NAGLFCWMNLSPLLEEQTREGELALWDSML 390 (442)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~----------------~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~ 390 (442)
....++..++.+.+.+.|++. ++... .| ..|.++++.++... .....+...+
T Consensus 263 ----~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~-----~~~~~~~~~l- 332 (392)
T 3qhx_A 263 ----VLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR-----TAAEQLCAKT- 332 (392)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH-----HHHHHHHHHC-
T ss_pred ----HHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH-----HHHHHHHHhC-
Confidence 223445566667777788765 33222 11 12557888887521 1345566555
Q ss_pred HcCcEEEeCCCCCCC------------------CCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 391 HEVKLNISPGSSCHC------------------SEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 391 ~~~gi~v~pg~~f~~------------------~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
+..|+.+..|+.+.. ..++.||||++. ++.++.++.|.+++
T Consensus 333 ~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~---e~~~~~i~~l~~al 391 (392)
T 3qhx_A 333 NIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI---EDVADLLDDLKQAL 391 (392)
T ss_dssp SSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred CCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEecc---CCHHHHHHHHHHHh
Confidence 444888887776421 125789999985 34556666666554
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-28 Score=241.28 Aligned_cols=292 Identities=11% Similarity=0.058 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCe---EEEcCCCCcChHH----hHhhhcCcEEE
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDA---LLVPTPYYPGFDR----DLRWRTGIKIV 170 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~---Vl~~~p~y~~~~~----~~~~~~G~~v~ 170 (442)
..+++.++++++ +++++|++|+|+++++.+++.+++++||. |+++.|+|+.... .++ ..|+++.
T Consensus 114 ~~l~~~la~~~g--------~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~-~~G~~~~ 184 (465)
T 3e9k_A 114 ESIVGLMKDIVG--------ANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQ-LHGLNIE 184 (465)
T ss_dssp HHHHGGGHHHHT--------CCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHH-HTTCCHH
T ss_pred HHHHHHHHHHcC--------CCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHH-HcCCcce
Confidence 567777777754 56889999999999999999999877655 9999999987433 555 3787752
Q ss_pred -----EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcC
Q 046900 171 -----PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGS 245 (442)
Q Consensus 171 -----~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~ 245 (442)
.+|.+ +++.+|+++|+++++++ +.++++|++++|+||||.+++ +++|.++|+++|++||+|++|+..
T Consensus 185 ~~~v~~~~~~--~~~~~d~~~l~~~i~~~---~~~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g 256 (465)
T 3e9k_A 185 ESMRMIKPRE--GEETLRIEDILEVIEKE---GDSIAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVG 256 (465)
T ss_dssp HHEEEECCCT--TCSSCCHHHHHHHHHHH---GGGEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTT
T ss_pred eeeEEEecCC--CCCccCHHHHHHHHHhc---CCCeEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhcC
Confidence 22333 45778999999999753 137899999999999999998 678888999999999999999842
Q ss_pred CCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc-------------------
Q 046900 246 AFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS------------------- 306 (442)
Q Consensus 246 ~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~------------------- 306 (442)
.....+... +..++++|++|.++....++|+++++ +.+.+.+.....
T Consensus 257 ----~~~~~~~~~---------~~D~~~~s~~K~l~~gp~~~g~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 322 (465)
T 3e9k_A 257 ----NVELYLHDW---------GVDFACWCSYKYLNAGAGGIAGAFIH-EKHAHTIKPALVGWFGHELSTRFKMDNKLQL 322 (465)
T ss_dssp ----TSCCCHHHH---------TCCEEEECSSSTTCCCTTCCCEEEEC-GGGTTTSCCSSCCGGGBCHHHHTTCCSCCCB
T ss_pred ----CcCCchhhc---------CCCEEEECcccccccCCCceEEEEEc-HHHHhhcCCcccCccCCCCCcccccCCCcCc
Confidence 223344333 33478899999993122378999984 443322211000
Q ss_pred --------cCCCcHHHHHHHHHHhcCchhHHH-HHHHHHHHHHHHHHHHHHHHHh-----------CCCeeecCC----c
Q 046900 307 --------FTLISSQTQYLLASMLSNKKFTEN-YIKTNRERLQKRYQMIIEGLRS-----------AGIECLKGN----A 362 (442)
Q Consensus 307 --------~~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~-----------~g~~~~~~~----~ 362 (442)
.+..+.+...++.+.++ ++.+ .++++++++.++++++.+.|++ .|+++..|. .
T Consensus 323 ~~~~~~~~~gt~~~~~~~a~~aal~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~ 399 (465)
T 3e9k_A 323 IPGVCGFRISNPPILLVCSLHASLE---IFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEER 399 (465)
T ss_dssp CSSGGGGCCSCCCHHHHHHHHHHHH---HHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGB
T ss_pred CCChHHhccCCccHHHHHHHHHHHH---HHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhc
Confidence 01233344444444443 2222 2677888899999999999987 578877664 3
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEe--ecCCHHHHHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCF--ANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
|.++|+.++. +..++.+.|.++ ||.+.. ..++++|+++ ...++++++++++.|++++++..
T Consensus 400 g~~~~~~~~~--------~~~~l~~~L~~~-Gi~v~~------~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~~ 462 (465)
T 3e9k_A 400 GCQLTITFSV--------PNKDVFQELEKR-GVVCDK------RNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSAE 462 (465)
T ss_dssp CSCEEEEECC--------TTCCHHHHHHTT-TEECEE------ETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC--
T ss_pred ccEEEEEecC--------CHHHHHHHHHHC-CEEEec------CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhcc
Confidence 5678888762 134677777666 999873 2357999998 23389999999999999987543
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=231.96 Aligned_cols=322 Identities=13% Similarity=0.160 Sum_probs=221.2
Q ss_pred ceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecC
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAG 128 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G 128 (442)
++++|+.+.+.++. +.+.+.+... ...|.+..+..++|++++++++ .+++++++|
T Consensus 7 ~~~~l~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~~~~l~~~la~~~~----------~~~~~~~~~ 61 (374)
T 3uwc_A 7 PYSYLERQFADIEP--YLNDLREFIK-------------TADFTLGAELEKFEKRFAALHN----------APHAIGVGT 61 (374)
T ss_dssp CSCCHHHHTSSCHH--HHHHHHHHHH-------------HTCCSSCHHHHHHHHHHHHHTT----------CSEEEEESC
T ss_pred eeeccccCCCCchH--HHHHHHHHHH-------------cCCcccChhHHHHHHHHHHHhC----------CCcEEEeCC
Confidence 46788888777654 4444443321 1246566788999999999975 337899999
Q ss_pred hHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEe
Q 046900 129 ATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLIT 207 (442)
Q Consensus 129 ~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~ 207 (442)
+++++..++.++ +++||.|+++.|+|+.+...++. .|++++.++++ .++.+|++.+++.+++ ++++|+
T Consensus 62 gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~-~g~~~~~~~~~--~~~~~d~~~l~~~~~~------~~~~v~-- 130 (374)
T 3uwc_A 62 GTDALAMSFKMLNIGAGDEVITCANTFIASVGAIVQ-AGATPVLVDSE--NGYVIDPEKIEAAITD------KTKAIM-- 130 (374)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHH-TTCEEEEECBC--TTSSBCGGGTGGGCCT------TEEEEC--
T ss_pred HHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHH-cCCEEEEEecC--CCCCcCHHHHHHhCCC------CceEEE--
Confidence 999999999999 99999999999999999998884 99999999987 3577899999988764 677666
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC-CCCCCcccHHHHHhhhcCCCCCcEEEEecCc--ccCCCCC
Q 046900 208 NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA-FSSSEFVSIAEILEARQYKDSERVHIVYSLS--KDLGLPG 284 (442)
Q Consensus 208 ~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~-~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~S--K~~g~~G 284 (442)
|+||||.+.+ +++|.++|+++|+++|+||+|+.+. +++..... -..+++.|+| |.++.+|
T Consensus 131 -~~n~~G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~-------------~~d~~~~s~~~~K~l~~~g 193 (374)
T 3uwc_A 131 -PVHYTGNIAD---MPALAKIAKKHNLHIVEDACQTILGRINDKFVGS-------------WGQFACFSLHPLKNLNVWS 193 (374)
T ss_dssp -CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS-------------SSSEEEEECSSSSSSCCSS
T ss_pred -EeCCcCCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCCeeccc-------------cccEEEEeCCCCCcCCccc
Confidence 9999999987 7788889999999999999998643 22211100 1136677866 9997447
Q ss_pred ceeEEEeecCHHHHHHHHHcccc--------------CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSF--------------TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGL 350 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~--------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 350 (442)
. .|+++++++.+.+.++..... +.++.+...+....+. . +++..++.++..+++.+.|
T Consensus 194 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~---~----~~~~~~~~~~~~~~l~~~l 265 (374)
T 3uwc_A 194 D-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMN---Q----LETITEKRRGIAHLYDQSF 265 (374)
T ss_dssp C-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGG---G----HHHHHHHHHHHHHHHHHHT
T ss_pred e-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHh
Confidence 5 899998777776666543321 1123333332222221 1 3445555666777888888
Q ss_pred HhCC--Ceeec-CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC--------------C-------
Q 046900 351 RSAG--IECLK-GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC--------------S------- 406 (442)
Q Consensus 351 ~~~g--~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~--------------~------- 406 (442)
.+.+ +++.. +.++...|..++-... +..++.+.|.++ ||.+.++..... .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L~~~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (374)
T 3uwc_A 266 VDLSEFIDVPVRREGVYHVFHIYVLRVK-----YRDQLFQYLKDN-GIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKH 339 (374)
T ss_dssp GGGTTTEECCCCCTTEECCCSSEEEEET-----THHHHHHHHHHT-TBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHH
T ss_pred ccCCCeEEeccCCCCCceeeEEEEEEcC-----CHHHHHHHHHHC-CCccccCCCCccccChhhhhcCCccCCCccHHHH
Confidence 7764 55432 2322222221111000 256788888766 999998751100 0
Q ss_pred CCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 407 EPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 407 ~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
..+.+||++. ..++++++++++.|++++++.
T Consensus 340 ~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 340 GEAVITLPAHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp HHHEEEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HhCEEEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 0157999886 348999999999999998753
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-27 Score=229.50 Aligned_cols=284 Identities=12% Similarity=0.081 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHhCCCCccC-CCcEEE-ecChHHHHHHHHHhhcCCCCeEEEcCCCCcC-hHHhHhhhc--CcEEEEEe
Q 046900 99 SFRQAMASFMEQIRGGRAKFD-LNRIVV-TAGATAANELLTFILADPGDALLVPTPYYPG-FDRDLRWRT--GIKIVPIH 173 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~-~~~i~~-t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~-~~~~~~~~~--G~~v~~v~ 173 (442)
++.+++.+.+.+.+| ++ +++|++ |+|+++++.+++.+++++| .+.+..+.|.. ....+. .. |++++.++
T Consensus 78 ~~~~~~~~~la~~~g----~~~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~-~~~~g~~~~~v~ 151 (398)
T 2fyf_A 78 NLVGRVRSGLAELFS----LPDGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVS-KNPFVGEPIIIT 151 (398)
T ss_dssp HHHHHHHHHHHHHTT----CCTTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHH-HCTTSCCCEEEE
T ss_pred HHHHHHHHHHHHHhC----CCCCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHH-HhCCCCceEEEe
Confidence 334444444444444 34 468998 9999999999999999887 22333333321 112233 24 88888888
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
++. ++..+.+ + ..++++|++++|+||||.+++.+++.++ +|+++|+|++|+.+.. + .
T Consensus 152 ~~~--g~~~~~~-----i------~~~~~~v~~~~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~---~-~ 208 (398)
T 2fyf_A 152 SDP--GSAPEPQ-----T------DPSVDVIAWAHNETSTGVAVAVRRPEGS------DDALVVIDATSGAGGL---P-V 208 (398)
T ss_dssp CCT--TCCCCCC-----C------CTTCSEEEEESEETTTTEECCCCCCTTC------C-CEEEEECTTTTTTS---C-C
T ss_pred cCC--CCCCCcc-----c------cCCCCEEEEeCcCCCcceecchHHhhhh------cCCeEEEEeccccCCc---c-c
Confidence 762 3444421 2 2378999999999999999997766654 7999999999986432 1 1
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc-----------------------cccCCC
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM-----------------------SSFTLI 310 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~-----------------------~~~~~~ 310 (442)
.+ . +..+++.|+||.+|.+| ++||++++ +.+.+.+++. ..++..
T Consensus 209 ~~----~-------~~di~~~s~sK~~~~~g-g~g~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 275 (398)
T 2fyf_A 209 DI----A-------ETDAYYFAPQKNFASDG-GLWLAIMS-PAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTP 275 (398)
T ss_dssp CG----G-------GCSEEEECTTSTTCSCS-SEEEEEEC-HHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCC
T ss_pred Cc----c-------cCcEEEEecCcccCCCC-ceEEEEEC-HHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCC
Confidence 11 1 12367899999999775 69999994 5555444221 122445
Q ss_pred cHHHHHHHHHHhcCchhHHHH--HHHHHHHHHHHHHHHHHHHHhC-CCeeec--C--CceEEEEEecCCcccccChhhHH
Q 046900 311 SSQTQYLLASMLSNKKFTENY--IKTNRERLQKRYQMIIEGLRSA-GIECLK--G--NAGLFCWMNLSPLLEEQTREGEL 383 (442)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~--~~g~~~~~~~~~~~~~~~~~~~~ 383 (442)
+...+.++.++++. +.+. +++.+++++++++++.+.|++. |+++.. + .+++++|++++... +..
T Consensus 276 ~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 346 (398)
T 2fyf_A 276 AIATLALLAEQIDW---LVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDV------DAG 346 (398)
T ss_dssp CHHHHHHHHHHHHH---HHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTS------CHH
T ss_pred CHHHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCC------CHH
Confidence 55666666666652 2222 6778889999999999999988 888763 4 35668999986532 267
Q ss_pred HHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 384 ALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 384 ~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
++++.|.++ ||.+++|. ...+.+++||+++ ..+++++++++++|++++++
T Consensus 347 ~l~~~L~~~-gI~v~~g~--~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 347 TVAKILRAN-GIVDTEPY--RKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp HHHHHHHHT-TCBCCSCC--TTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHC-CcEEecCc--ccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 888888877 99999873 2223579999998 23799999999999998754
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-27 Score=235.06 Aligned_cols=352 Identities=12% Similarity=0.061 Sum_probs=229.5
Q ss_pred CCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+|||+.+ .+.++ ++.+.+.+.+.... ...|....+..+++.++++++.+..+ .+
T Consensus 50 d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~------------~~~~~~~~~~~~~~~~la~~l~~~~~----~~ 113 (476)
T 3i5t_A 50 TEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMV------------LPYASPWYMATSPAARLAEKIATLTP----GD 113 (476)
T ss_dssp ETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHH------------CCCCCTTTCBCHHHHHHHHHHHTTSS----TT
T ss_pred ECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHh------------ccCcccCccCCHHHHHHHHHHHhcCC----CC
Confidence 3445678999876 45553 35555555443211 11111113557888899999987643 45
Q ss_pred CCcEEEecChHHHHHHHHHhhcC--------CCCeEEEcCCCCcChHHhHhhhcC--------------cEEEEEecCCC
Q 046900 120 LNRIVVTAGATAANELLTFILAD--------PGDALLVPTPYYPGFDRDLRWRTG--------------IKIVPIHCDSS 177 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~--------~gd~Vl~~~p~y~~~~~~~~~~~G--------------~~v~~v~~~~~ 177 (442)
.++|++++|+++++..+++++.. .++.|++.+|+|.++...+....| ...++.|....
T Consensus 114 ~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 193 (476)
T 3i5t_A 114 LNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRH 193 (476)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGG
T ss_pred cCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccc
Confidence 67999999999999999988853 367999999999987655432112 22222222111
Q ss_pred CCCcCC--------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCC
Q 046900 178 NNFQIT--------PQALEAAYKEAESKDMRVRGVLITNPSNPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS 248 (442)
Q Consensus 178 ~~~~~d--------~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~ 248 (442)
+ +..| +++|++.+++.. ..++++|+++.++|++|. +.+.+.+++|.++|++||+++|+||+|.++...
T Consensus 194 ~-~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~ 270 (476)
T 3i5t_A 194 A-GNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRC 270 (476)
T ss_dssp C-TTSCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred c-CCCchHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccc
Confidence 1 1223 778888887421 125666666666788885 788899999999999999999999999987666
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHc---------cccCCCcHHHHHHH
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRM---------SSFTLISSQTQYLL 318 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~---------~~~~~~s~~~q~~~ 318 (442)
+..+ ....... ....+ .+|||+++ .| +|+|++++ ++.+.+.+... ...+..+++++.++
T Consensus 271 G~~~-~~~~~~~-----v~pdi---~t~sK~l~-~G~~plg~v~~-~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa 339 (476)
T 3i5t_A 271 GEWF-ASEKVFG-----VVPDI---ITFAKGVT-SGYVPLGGLAI-SEAVLARISGENAKGSWFTNGYTYSNQPVACAAA 339 (476)
T ss_dssp SSSC-HHHHTTC-----CCCSE---EEECGGGG-TTSSCCEEEEE-CHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHH
T ss_pred cCce-eeecccC-----CCcch---hhhhhhhc-CCCcCeEEEEE-CHHHHHHHhcCCcccccccccCCCCcCHHHHHHH
Confidence 6422 2220111 11222 36899998 69 99999999 67777766542 13356788899888
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCceEEEEEecCCccccc-Ch----hhHHHHHHHH
Q 046900 319 ASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA----GIECLKGNAGLFCWMNLSPLLEEQ-TR----EGELALWDSM 389 (442)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~~~~-~~----~~~~~l~~~l 389 (442)
.+.|+..+ + +...+.++++.+++.+.|+++ .+....+.| .|+++++....... .+ .....+++.|
T Consensus 340 ~aaL~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (476)
T 3i5t_A 340 LANIELME---R--EGIVDQAREMADYFAAALASLRDLPGVAETRSVG-LVGCVQCLLDPTRADGTAEDKAFTLKIDERC 413 (476)
T ss_dssp HHHHHHHH---H--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEET-TEEEEEECCC-----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---h--HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC-ceeEEEEecCccccccccchhHHHHHHHHHH
Confidence 88876321 1 234455566666666666653 233344444 47777776421100 00 0255778888
Q ss_pred HHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 390 LHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 390 ~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
+++ ||.+.|. + +++||+.. ..+++++++++++|++++++..+
T Consensus 414 ~~~-Gv~v~~~------g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 414 FEL-GLIVRPL------G-DLCVISPPLIISRAQIDEMVAIMRQAITEVSA 456 (476)
T ss_dssp HHT-TEECEEE------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHC-CCEEEec------C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777 9999983 1 68999954 33899999999999999987654
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=230.88 Aligned_cols=336 Identities=15% Similarity=0.102 Sum_probs=214.3
Q ss_pred CCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC
Q 046900 45 TNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120 (442)
Q Consensus 45 ~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 120 (442)
..+..+|||+.+. +.+ +++.+.+.+.+..... ....| ..++++++++.+.+..+ .+
T Consensus 53 ~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~----------~~~~~-----~~~~~~~l~~~la~~~~-----~~ 112 (434)
T 2epj_A 53 VDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARG----------WLYGA-----PGEAEVLLAEKILGYVK-----RG 112 (434)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC----------SCCSS-----CCHHHHHHHHHHHHHHC-----TT
T ss_pred CCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhC----------CCCCC-----CCHHHHHHHHHHHHhCC-----CC
Confidence 3456789998775 343 3455555555432110 01122 23455555555555432 36
Q ss_pred CcEEEecChHHHHHHHHHh---hcCCCCeEEEcCCCCcChHHhHhh-------------hcCc------EEEEEecCCCC
Q 046900 121 NRIVVTAGATAANELLTFI---LADPGDALLVPTPYYPGFDRDLRW-------------RTGI------KIVPIHCDSSN 178 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~---l~~~gd~Vl~~~p~y~~~~~~~~~-------------~~G~------~v~~v~~~~~~ 178 (442)
++|++|+|+++++..++++ +. +++.|++.+|+|.++...+.. ..|+ +++.++.
T Consensus 113 ~~v~~~~sgseA~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~---- 187 (434)
T 2epj_A 113 GMIRFVNSGTEATMTAIRLARGYT-GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY---- 187 (434)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHH-CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET----
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhh-CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC----
Confidence 8999999999999999887 54 467888889999875443210 0232 3455543
Q ss_pred CCcCCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHH
Q 046900 179 NFQITPQALEAAYKEAESKDMRVRGVLITNP-SNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIA 256 (442)
Q Consensus 179 ~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~ 256 (442)
.|++.|++.+++.. .+++ +++++| +||||.++ +.+.+++|.++|++||+++|+||+|.++ ..+.. . ..
T Consensus 188 ---~d~~~le~~l~~~~---~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~-~-~~ 257 (434)
T 2epj_A 188 ---NDVEALERVFAEYG---DRIA-GVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLE-G-AQ 257 (434)
T ss_dssp ---TCHHHHHHHHHHHG---GGEE-EEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTT-H-HH
T ss_pred ---CCHHHHHHHHHhCC---CCEE-EEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcc-h-hh
Confidence 27899999997531 2455 456666 46799866 6999999999999999999999999976 33321 1 11
Q ss_pred HHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc-----cccCCCcHHHHHHHHHHhcCchhHHHH
Q 046900 257 EILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM-----SSFTLISSQTQYLLASMLSNKKFTENY 331 (442)
Q Consensus 257 ~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~-----~~~~~~s~~~q~~~~~~l~~~~~~~~~ 331 (442)
+... .... +.||||.+| .|+|+||+++ ++.+.+.+... ...+..+++++.++.+.++... +
T Consensus 258 ~~~~-----~~~d---i~s~sK~l~-~G~~~G~v~~-~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~---~- 323 (434)
T 2epj_A 258 GYFN-----IEGD---IIVLGKIIG-GGFPVGAVAG-SREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALE---E- 323 (434)
T ss_dssp HHHT-----CCCS---EEEEEGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHH---H-
T ss_pred HHhC-----CCCC---eeeecchhc-CCcceeeeee-cHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHH---h-
Confidence 1111 0122 359999998 5999999999 46666554431 1224567888888777765221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC----CCeeecCCceEEEEEecCCcc-cc------cChhhHHHHHHHHHHcCcEEEeCC
Q 046900 332 IKTNRERLQKRYQMIIEGLRSA----GIECLKGNAGLFCWMNLSPLL-EE------QTREGELALWDSMLHEVKLNISPG 400 (442)
Q Consensus 332 ~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~-~~------~~~~~~~~l~~~l~~~~gi~v~pg 400 (442)
....++++++++++.+.|++. ++....+..|.++|++++... .. .......++++.|+++ ||.+.||
T Consensus 324 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~ 401 (434)
T 2epj_A 324 -EPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRR-GVFIAPS 401 (434)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHT-TEECCSS
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHC-CeEEecc
Confidence 223455555666666666543 554322334568899886510 00 0112356788888776 9999997
Q ss_pred CCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 401 SSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 401 ~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
.. .++|+++.. +++++++++++|++++++..
T Consensus 402 ~~------~~~~~~~~~-t~e~i~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 402 NL------EAVFTGLPH-QGEALEIAVEGLRSSLKTVL 432 (434)
T ss_dssp TT------SCEECCTTC-SHHHHHHHHHHHHHHHHHHH
T ss_pred CC------CcEEEeccC-CHHHHHHHHHHHHHHHHHHh
Confidence 42 247877655 89999999999999988753
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=229.02 Aligned_cols=339 Identities=14% Similarity=0.103 Sum_probs=215.9
Q ss_pred ceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCC---CcchHHHH--HHHH-HHHHHHhCCCCccCCCc
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQD---YHGLKSFR--QAMA-SFMEQIRGGRAKFDLNR 122 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g~~~lr--~~ia-~~l~~~~~~~~~~~~~~ 122 (442)
+.|+|..++|+.++. +.+.+.+..... + ...|+. +.|...++ ++++ +++.+.+| ++.
T Consensus 46 ~~i~l~~~~~~~~~~-v~~a~~~~~~~~-~---------~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g----~~~-- 108 (447)
T 3h7f_A 46 DTLEMIASENFVPRA-VLQAQGSVLTNK-Y---------AEGLPGRRYYGGCEHVDVVENLARDRAKALFG----AEF-- 108 (447)
T ss_dssp HSEECCTTCCCCCHH-HHHHHTSGGGGC-C---------CCEETTEESSSCCHHHHHHHHHHHHHHHHHHT----CSE--
T ss_pred CceeEecCCCCCCHH-HHHHHHHHhcCC-c---------cccCCcccccCccHHHHHHHHHHHHHHHHHcC----CCc--
Confidence 568888888877544 444443322100 0 012221 12444444 5566 77776655 333
Q ss_pred EEE-ecChHHHHHHHHHhhcCCCCeEEEcCCCCcCh-HHh--Hhh-hcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhc
Q 046900 123 IVV-TAGATAANELLTFILADPGDALLVPTPYYPGF-DRD--LRW-RTGIKIVPIHCDSSNNFQITPQALEAAYKEAESK 197 (442)
Q Consensus 123 i~~-t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~-~~~--~~~-~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 197 (442)
+.+ ++|+++++..++.+++++||+|+++.|+|..+ ... +.. ..+..+++++++++ ++.+|+++|++.+++.
T Consensus 109 ~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~d~~~l~~~i~~~--- 184 (447)
T 3h7f_A 109 ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPA-THLIDMDAVRATALEF--- 184 (447)
T ss_dssp EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTT-TCSCCHHHHHHHHHHH---
T ss_pred eEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcc-cCCcCHHHHHHHHHhc---
Confidence 344 77788999999999999999999999999773 211 111 13556777777643 4679999999999653
Q ss_pred CCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc-CCCCCCCcccHHHHHhhhcCCCCCcEEEEecC
Q 046900 198 DMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG-SAFSSSEFVSIAEILEARQYKDSERVHIVYSL 276 (442)
Q Consensus 198 ~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~-~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~ 276 (442)
+++++++++|+||++. .+++|.++|++||+++|+||+|.. +.+.+..+..+ . ...+++.|+
T Consensus 185 --~~~~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~----~-------~~di~~~s~ 246 (447)
T 3h7f_A 185 --RPKVIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV----P-------HADVVSTTV 246 (447)
T ss_dssp --CCSEEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST----T-------TCSEEEEES
T ss_pred --CCeEEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC----C-------CCcEEEecC
Confidence 6788899899999986 488999999999999999999743 33333211111 1 112678999
Q ss_pred cccCCCCCceeEEEeecCHHHHHHHHHcccc---CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 277 SKDLGLPGFRVGTIYSYNDKVVTTARRMSSF---TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 277 SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
||++ +|+|.||++++ +.+.+.+...... +......+.++...+.. ....++++.++.+.++++++.+.|.+.
T Consensus 247 sK~l--~G~~gG~i~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~ 321 (447)
T 3h7f_A 247 HKTL--GGGRSGLIVGK-QQYAKAINSAVFPGQQGGPLMHVIAGKAVALKI--AATPEFADRQRRTLSGARIIADRLMAP 321 (447)
T ss_dssp SGGG--CCCSCEEEEEC-GGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--TTSHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred CcCC--CCCCeEEEEEC-HHHHHHHhhhcCCcccCCccHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9987 58899999994 5555555443222 22223333333333321 112235677888889999999999887
Q ss_pred -----CCeeec-CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe----CCCCCCCCCCCEEEEEeec-----C
Q 046900 354 -----GIECLK-GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS----PGSSCHCSEPGWFRVCFAN-----M 418 (442)
Q Consensus 354 -----g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~----pg~~f~~~~~~~iRls~~~-----~ 418 (442)
|+++.. +..++++|+++..... +. +.+..+++++||.+. |+..+++..++++||++.. +
T Consensus 322 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~ 395 (447)
T 3h7f_A 322 DVAKAGVSVVSGGTDVHLVLVDLRDSPL-----DG-QAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGF 395 (447)
T ss_dssp HHHHTTCEEGGGSCSSSEEEEECTTSSC-----CH-HHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTC
T ss_pred cccCCCeEEecCCCCCCEEEEEcCCCCC-----CH-HHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCC
Confidence 888764 3456688888864211 12 334455566699998 6543333345779998752 4
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 046900 419 SEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 419 ~~e~i~~~l~~l~~~l~~~ 437 (442)
++++++++++.|.+++.+.
T Consensus 396 ~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 396 GDTEFTEVADIIATALATG 414 (447)
T ss_dssp CHHHHHHHHHHHHHHHHSG
T ss_pred CHHHHHHHHHHHHHHHhcc
Confidence 7899999999999988653
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=231.79 Aligned_cols=333 Identities=11% Similarity=0.085 Sum_probs=207.5
Q ss_pred CCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC
Q 046900 46 NPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN 121 (442)
Q Consensus 46 ~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~ 121 (442)
....+|||+.+. +++ +++.+.+.+.+.... ...| .+..++++++++++.+.++ .++
T Consensus 55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~------------~~~~---~~~~~~~~~la~~l~~~~~-----~~~ 114 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSH------------GVQY---AASHPLEVRWAERIVAAFP-----SIR 114 (453)
T ss_dssp TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTT------------TCSS---CSSCHHHHHHHHHHHHHCT-----TCS
T ss_pred CCCEEEECcccHhhcccCCCCHHHHHHHHHHHHh------------CCCC---CCCCHHHHHHHHHHHhhCC-----CCC
Confidence 345688998775 333 345555555544321 0112 2356899999999987642 478
Q ss_pred cEEEecChHHHHHHHHHh---hcCCCCeEEEcCCCCcChHHhHhhh----------cCc------EEEEEecCCCCCCcC
Q 046900 122 RIVVTAGATAANELLTFI---LADPGDALLVPTPYYPGFDRDLRWR----------TGI------KIVPIHCDSSNNFQI 182 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~---l~~~gd~Vl~~~p~y~~~~~~~~~~----------~G~------~v~~v~~~~~~~~~~ 182 (442)
+|++|+|+++++..++++ +.+ ++.|++.+|+|+++...+... .|+ .++.++. .
T Consensus 115 ~v~~~~gg~eA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~ 186 (453)
T 2cy8_A 115 KLRFTGSGTETTLLALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------D 186 (453)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHC-CCEEEEECC----------------------------CGGGEEEECT-------T
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------C
Confidence 999999999999999887 665 467888889998765432210 122 1233331 3
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEeCCC-CCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHh
Q 046900 183 TPQALEAAYKEAESKDMRVRGVLITNPS-NPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILE 260 (442)
Q Consensus 183 d~~~l~~~l~~~~~~~~~~~~v~l~~P~-NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~ 260 (442)
|++.|++.+++.. .+++ +++++|+ ||||.++ +.+.+++|.++|++||+++|+||+|.++ +.+. .... +...
T Consensus 187 d~~~le~~l~~~~---~~~~-~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~-~~~~-~~~~ 259 (453)
T 2cy8_A 187 DIEGMREVFANHG---SDIA-AFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGN-HGMQ-ALLD 259 (453)
T ss_dssp CHHHHHHHHHHHG---GGEE-EEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCT-THHH-HHHT
T ss_pred CHHHHHHHHHhcC---CCEE-EEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCc-hhhh-HHhC
Confidence 7899999987531 2555 4566664 7799765 7999999999999999999999999987 4442 1111 1111
Q ss_pred hhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH-------ccccCCCcHHHHHHHHHHhcC-chhHHHHH
Q 046900 261 ARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR-------MSSFTLISSQTQYLLASMLSN-KKFTENYI 332 (442)
Q Consensus 261 ~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~-------~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~ 332 (442)
.... +.||||.++ +|+|+||+++ ++.+.+.+.. ....+..+++++.++.+.++. . .
T Consensus 260 -----~~~d---i~s~sK~l~-~G~~~G~v~~-~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~------~ 323 (453)
T 2cy8_A 260 -----VQPD---LTCLAKASA-GGLPGGILGG-REDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL------E 323 (453)
T ss_dssp -----CCCS---EEEEEGGGG-TTSSCEEEEE-CHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH------H
T ss_pred -----CCCc---EEEEChhhh-CCcceEEEec-hHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh------h
Confidence 0122 348999998 6999999999 4566554433 112345678888887777653 1 0
Q ss_pred HHHHHHHHHHHHHHHHHHHh----CCCeeecCCceEEEEEecCC-----c--c---c---ccChhhHHHHHHHHHHcCcE
Q 046900 333 KTNRERLQKRYQMIIEGLRS----AGIECLKGNAGLFCWMNLSP-----L--L---E---EQTREGELALWDSMLHEVKL 395 (442)
Q Consensus 333 ~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~-----~--~---~---~~~~~~~~~l~~~l~~~~gi 395 (442)
....+.++++++++.+.|++ .++....+..|.++|++++. . . . ........++++.|+++ ||
T Consensus 324 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gv 402 (453)
T 2cy8_A 324 DDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILE-GV 402 (453)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHT-TE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHC-Ce
Confidence 12233444445555555543 34433233345588998874 1 0 0 00112356788888876 99
Q ss_pred EEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 396 NISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 396 ~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
.+.|+ +.+|+++.. +++++++++++|++++++..+
T Consensus 403 ~v~~~--------~~~~l~~~~-t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 403 DIGGR--------GSVFLSAQH-EREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp ECBTT--------TEEECCTTC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCC--------CCEEeeccC-CHHHHHHHHHHHHHHHHHHHh
Confidence 99653 237887655 999999999999999887643
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=229.65 Aligned_cols=316 Identities=11% Similarity=0.037 Sum_probs=221.2
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCc-----EEEecChHHHHHHHHHhhcC--------CC-----CeEEEcC
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR-----IVVTAGATAANELLTFILAD--------PG-----DALLVPT 151 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~-----i~~t~G~~~ai~~~~~~l~~--------~g-----d~Vl~~~ 151 (442)
+|....+..++++++.+++.+.+| ++.++ +++|+|+++++.+++.++.+ +| +.|+++.
T Consensus 72 ~~~~~~~~~~l~~~~~~~la~l~g----~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~ 147 (452)
T 2dgk_A 72 DKEEYPQSAAIDLRCVNMVADLWH----APAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP 147 (452)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHTT----CCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS
T ss_pred ChhhChhHHHHHHHHHHHHHHHhC----CCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC
Confidence 355556888999999999998877 44444 99999999999999888754 55 5899999
Q ss_pred CCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHh
Q 046900 152 PYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATR 231 (442)
Q Consensus 152 p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~ 231 (442)
+|..+...+.. .|++++.+|+++ ++|.+|+++|++++.+ ++++|++++|+||||.+.+ +++|.++|++
T Consensus 148 -~h~~~~~~~~~-~G~~v~~v~~~~-~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~ 215 (452)
T 2dgk_A 148 -VQICWHKFARY-WDVELREIPMRP-GQLFMDPKRMIEACDE------NTIGVVPTFGVTYTGNYEF---PQPLHDALDK 215 (452)
T ss_dssp -CCHHHHHHHHH-TTCEEEECCCBT-TBCSCCHHHHHHHCCT------TEEEEECBBSCTTTCBBCC---HHHHHHHHHH
T ss_pred -CcHHHHHHHHH-cCceEEEEecCC-CCCeECHHHHHHHHhh------CCEEEEEEcCCcCCcccCC---HHHHHHHHHH
Confidence 99999998885 899999999875 3578999999999865 7889999999999999977 7777888888
Q ss_pred c------CcEEEEeccCCcCCC---CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHH-HHHH
Q 046900 232 K------NIHLVSDEIYSGSAF---SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKV-VTTA 301 (442)
Q Consensus 232 ~------~~~vi~De~y~~~~~---~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~-~~~~ 301 (442)
+ ++++++|++|+.+.. .......+ . ..+-..++.|++| ++++|+++||+++.++.. .+.+
T Consensus 216 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~--------~~~~d~~~~~~hK-~~~~~~~~G~~~~~~~~~~~~~~ 285 (452)
T 2dgk_A 216 FQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF-R--------LPRVKSISASGHK-FGLAPLGCGWVIWRDEEALPQEL 285 (452)
T ss_dssp HHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST-T--------STTEEEEEEETTT-TTCCCSSCEEEEESSGGGSCGGG
T ss_pred HhhccCCCCcEEEEcccHHHHHHhhCccchhhc-C--------CCCCcEEEECccc-ccCCCCCeEEEEEcCHHHHHHHh
Confidence 5 999999999997542 11100110 0 0133346778999 556899999999965532 2322
Q ss_pred HHccccC-----------CC---cHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC-----C
Q 046900 302 RRMSSFT-----------LI---SSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKG-----N 361 (442)
Q Consensus 302 ~~~~~~~-----------~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-----~ 361 (442)
.....+. .. ..+.|.++...+. .+.+++..+++.++++++.+.|++. ++++..+ .
T Consensus 286 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 360 (452)
T 2dgk_A 286 VFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG-----REGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEG 360 (452)
T ss_dssp CEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTB
T ss_pred ccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCC
Confidence 1111110 00 2344555444442 2345677888889999999999987 5887643 3
Q ss_pred ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCC-CCCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHHHh
Q 046900 362 AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCH-CSEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 362 ~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~-~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
.+ ++.+.++.... ...+..++.+.|.++ ||.+..+.... ..+.+++|++++. .++++++++++.|+++++...+
T Consensus 361 ~~-~v~f~~~~~~~--~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 361 IP-AVCFKLKDGED--PGYTLYDLSERLRLR-GWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 436 (452)
T ss_dssp SS-EEEEEECTTCC--CSCCHHHHHHHHHHT-TCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eE-EEEEEecCccc--ccCCHHHHHHHHHhc-CCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 44 55556653210 000246788888776 98654321111 1234689999973 2689999999999999887654
Q ss_pred h
Q 046900 440 R 440 (442)
Q Consensus 440 ~ 440 (442)
.
T Consensus 437 ~ 437 (452)
T 2dgk_A 437 H 437 (452)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-27 Score=231.49 Aligned_cols=332 Identities=13% Similarity=0.120 Sum_probs=213.3
Q ss_pred CCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC
Q 046900 45 TNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL 120 (442)
Q Consensus 45 ~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 120 (442)
..+..+|||+.+. +.+ +++.+.+.+.+.... ...|. +..++++++++++.+.++ .+
T Consensus 49 ~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~------------~~~~~---~~~~~~~~l~~~l~~~~~-----~~ 108 (424)
T 2e7u_A 49 ADGNRYLDYVMSWGPLILGHAHPKVLARVRETLER------------GLTFG---APSPLEVALAKKVKRAYP-----FV 108 (424)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT------------CSCCS---SCCHHHHHHHHHHHHHCT-----TC
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHHh------------CCCCC---CCCHHHHHHHHHHHHhCC-----CC
Confidence 3455688998775 444 345555555543211 01121 234666677777766532 47
Q ss_pred CcEEEecChHHHHHHHHHh---hcCCCCeEEEcCCCCcChHHhHhhh-------------cCc------EEEEEecCCCC
Q 046900 121 NRIVVTAGATAANELLTFI---LADPGDALLVPTPYYPGFDRDLRWR-------------TGI------KIVPIHCDSSN 178 (442)
Q Consensus 121 ~~i~~t~G~~~ai~~~~~~---l~~~gd~Vl~~~p~y~~~~~~~~~~-------------~G~------~v~~v~~~~~~ 178 (442)
++|++|+|+++++..+++. +. +++.|++.+|+|+++...+... .|+ +++.+|.
T Consensus 109 ~~v~~~~~g~ea~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~---- 183 (424)
T 2e7u_A 109 DLVRFVNSGTEATMSALRLARGYT-GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY---- 183 (424)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHH-CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT----
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhh-CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC----
Confidence 8999999999999999885 54 4578999999998865432200 122 3444442
Q ss_pred CCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCC-CCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHH
Q 046900 179 NFQITPQALEAAYKEAESKDMRVRGVLITNPSNP-LGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIA 256 (442)
Q Consensus 179 ~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NP-tG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~ 256 (442)
.|++.|++.+++.. .++ ++++++|+|+ ||.++ +.+.+++|.++ ++||+++|+||+|.++ ..+.. ...
T Consensus 184 ---~d~~~le~~l~~~~---~~~-~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~--~~~ 252 (424)
T 2e7u_A 184 ---NDPEGLREVLKRRG---EEI-AAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFG--GAT 252 (424)
T ss_dssp ---TCHHHHHHHHHHHG---GGE-EEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTT--HHH
T ss_pred ---CCHHHHHHHHHhCC---CCE-EEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchh--HHH
Confidence 37899999987531 144 4667788765 89765 78889999999 9999999999999987 33321 111
Q ss_pred HHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH-----ccccCCCcHHHHHHHHHHhcCchhHHHH
Q 046900 257 EILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR-----MSSFTLISSQTQYLLASMLSNKKFTENY 331 (442)
Q Consensus 257 ~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~-----~~~~~~~s~~~q~~~~~~l~~~~~~~~~ 331 (442)
+...- ... +.||||++| +|+|+||+++ ++.+.+.+.. ....+..+++++.++.+.++.. ++
T Consensus 253 ~~~~~-----~~d---i~s~sK~l~-~G~~~G~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~---~~- 318 (424)
T 2e7u_A 253 ELLGL-----KPD---LVTLGKILG-GGLPAAAYAG-RREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELL---EE- 318 (424)
T ss_dssp HHHTC-----CCS---EEEECGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHH---HH-
T ss_pred HHhCC-----Ccc---hhhhhhhhh-CCcceEEEEE-cHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHH---Hh-
Confidence 12110 122 349999998 6999999999 4566655544 1123456788888887777532 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----CCCeeecCCceEEEEEecCCcc-cc------cChhhHHHHHHHHHHcCcEEEeCC
Q 046900 332 IKTNRERLQKRYQMIIEGLRS----AGIECLKGNAGLFCWMNLSPLL-EE------QTREGELALWDSMLHEVKLNISPG 400 (442)
Q Consensus 332 ~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~~~-~~------~~~~~~~~l~~~l~~~~gi~v~pg 400 (442)
..+..++++++++++.+.|++ .++....+..|.++|++++... .. .......++++.|+++ ||.+.||
T Consensus 319 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~ 397 (424)
T 2e7u_A 319 NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDR-GIYWPPS 397 (424)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTT-TEECCSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHC-CeEEecc
Confidence 133455566666666666654 3553322334558899986521 00 0112356788888765 9999997
Q ss_pred CCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 401 SSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 401 ~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
.. ..+|+++.. +++++++++++|++++
T Consensus 398 ~~------~~~~~~~~~-t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 398 NF------EAAFLSVAH-REEDVEKTLEALRKAL 424 (424)
T ss_dssp SS------SCEECCTTC-CHHHHHHHHHHHHHHC
T ss_pred CC------CceEeeccC-CHHHHHHHHHHHHHhC
Confidence 42 247887655 8999999999998763
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=222.37 Aligned_cols=277 Identities=15% Similarity=0.156 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHh---hhcCcEEEEEecC
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLR---WRTGIKIVPIHCD 175 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~---~~~G~~v~~v~~~ 175 (442)
++++++|++++ .+ +.|++++| ++++..++.+++++||.|+++.|+|+.+...+. ...|++++.++.
T Consensus 2 ~l~~~la~~~g--------~~-~~i~~~sG-~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~- 70 (331)
T 1pff_A 2 ALEGKIAKLEH--------AE-ACAATASG-MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM- 70 (331)
T ss_dssp HHHHHHHHHHT--------CS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-
T ss_pred hHHHHHHHHhC--------CC-eEEEeCCh-HHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-
Confidence 68899999875 23 45555555 899999999999999999999999998876652 137999998875
Q ss_pred CCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHh-cCcEEEEeccCCcCCCCCCCccc
Q 046900 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATR-KNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 176 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~-~~~~vi~De~y~~~~~~~~~~~s 254 (442)
.|++.+++.+++ ++++|++++|+||||.+++ +++|.++|++ +|+++|+||+|+.+.+.. +
T Consensus 71 ------~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~----~ 131 (331)
T 1pff_A 71 ------AVPGNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN----P 131 (331)
T ss_dssp ------TSTTHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC----G
T ss_pred ------CCHHHHHHhhcC------CCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC----h
Confidence 367888887753 7899999999999999998 8888999999 999999999998644321 1
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCCce-eEEEeecCHHHHHHHHHcccc---CCCcHHHHHHHHHHhcCchhHHH
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPGFR-VGTIYSYNDKVVTTARRMSSF---TLISSQTQYLLASMLSNKKFTEN 330 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R-iG~i~~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~ 330 (442)
+ + .++.+++.|+||.++.+|.| +||++++++.+.+.++..... +..+++.+.++...++.
T Consensus 132 ~-----~-----~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~------ 195 (331)
T 1pff_A 132 L-----D-----LGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT------ 195 (331)
T ss_dssp G-----G-----GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH------
T ss_pred h-----h-----cCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch------
Confidence 1 1 25678899999999989999 899999543677777654443 24566677665555542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC---------------CCeeecC---CceEEEEEecCCcccccChhhHHHHHHHHHHc
Q 046900 331 YIKTNRERLQKRYQMIIEGLRSA---------------GIECLKG---NAGLFCWMNLSPLLEEQTREGELALWDSMLHE 392 (442)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~L~~~---------------g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 392 (442)
+....+...++.+.+.+.|++. ++++..+ ..+.++.+.++. ..++...+ ++
T Consensus 196 -~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l-~~ 264 (331)
T 1pff_A 196 -LDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG---------LEKAKKVL-DN 264 (331)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS---------HHHHHHHH-HT
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC---------HHHHHHHH-Hh
Confidence 1222233333444444444332 2222211 123366666652 33444444 55
Q ss_pred CcEEEeCCCCCC------------------------CCCCCEEEEEeecC-CHHHHHHHHHHHHH
Q 046900 393 VKLNISPGSSCH------------------------CSEPGWFRVCFANM-SEQTLEVALKRIHN 432 (442)
Q Consensus 393 ~gi~v~pg~~f~------------------------~~~~~~iRls~~~~-~~e~i~~~l~~l~~ 432 (442)
.||.+++.+.-+ +..++++||+++.. ++++++.+++.|++
T Consensus 265 ~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 265 CHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp CSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence 699887653110 11257999999842 56677777776654
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=231.60 Aligned_cols=352 Identities=13% Similarity=0.099 Sum_probs=222.5
Q ss_pred CCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+|||+.+ .+.++ ++.+.+.+.+..... ...|....+..+.+.++++.+.+..+ ..
T Consensus 51 d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~-----------~~~~~~~~~~~~~~~~lae~l~~~~~----~~ 115 (472)
T 3hmu_A 51 DSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMREL-----------PYYNTFFKTTHVPAIALAQKLAELAP----GD 115 (472)
T ss_dssp ETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHC-----------SCCCSSSSEECHHHHHHHHHHHHHSC----TT
T ss_pred ECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhc-----------cccccccccCCHHHHHHHHHHHHhCC----CC
Confidence 3456678999876 45553 355555554432110 01222223345667777777776543 45
Q ss_pred CCcEEEecChHHHHHHHHHhhcC--------CCCeEEEcCCCCcChHHhHhhhcCc-----------EEEEEecCC--C-
Q 046900 120 LNRIVVTAGATAANELLTFILAD--------PGDALLVPTPYYPGFDRDLRWRTGI-----------KIVPIHCDS--S- 177 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~--------~gd~Vl~~~p~y~~~~~~~~~~~G~-----------~v~~v~~~~--~- 177 (442)
.++|++++|+++++..+++++.. +++.|++.+|+|.++...+....|. .+..++... .
T Consensus 116 ~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~ 195 (472)
T 3hmu_A 116 LNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAE 195 (472)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHH
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccC
Confidence 67999999999999999998864 4689999999999877554421221 233444221 0
Q ss_pred CCCcCC--------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCC
Q 046900 178 NNFQIT--------PQALEAAYKEAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFS 248 (442)
Q Consensus 178 ~~~~~d--------~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~ 248 (442)
+.+ .| ++.|++.+++... .++++|++..++|++|.+. +.+.+++|.++|++||+++|+||+|.+|...
T Consensus 196 ~~~-~~~~~~~~~~~~~le~~i~~~~~--~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~ 272 (472)
T 3hmu_A 196 GGD-MDPEEFGLARARELEEAILELGE--NRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRT 272 (472)
T ss_dssp CTT-CCHHHHHHHHHHHHHHHHHHHCG--GGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred Ccc-cCHHHHHHHHHHHHHHHHHhcCC--CCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCccc
Confidence 111 23 7888888864311 2455545444467777755 8888999999999999999999999987665
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH----ccccCCCcHHHHHHHHHHhcC
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR----MSSFTLISSQTQYLLASMLSN 324 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~----~~~~~~~s~~~q~~~~~~l~~ 324 (442)
+..+ .. +... ....+ .+|||+++..|+|+||+++ ++.+.+.+.. ....+..++++|.++.+.|+.
T Consensus 273 G~~~-a~-~~~~-----v~pdi---~t~sK~l~gg~~plG~v~~-~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~ 341 (472)
T 3hmu_A 273 GNWF-GT-QTMG-----IRPHI---MTIAKGLSSGYAPIGGSIV-CDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRI 341 (472)
T ss_dssp SSSC-HH-HHHT-----CCCSE---EEECGGGTTTSSCCEEEEE-EHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHH
T ss_pred Cccc-hh-HHhC-----CCCce---eeechhhhcCCcceEEEEE-CHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHH
Confidence 5422 22 2211 11223 3689999844599999999 5677777632 122356788999988888763
Q ss_pred chhHHHHHHHHHHHHH-HHHHHHHHHHHhC----CCeeecCCceEEEEEecCCccccc-C-----hhhHHHHHHHHHHcC
Q 046900 325 KKFTENYIKTNRERLQ-KRYQMIIEGLRSA----GIECLKGNAGLFCWMNLSPLLEEQ-T-----REGELALWDSMLHEV 393 (442)
Q Consensus 325 ~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~~~~-~-----~~~~~~l~~~l~~~~ 393 (442)
.+ + +...+.++ ++.+++.+.|+++ .+....+.|. |+++++....... . .....++++.|+++
T Consensus 342 ~~---~--~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 414 (472)
T 3hmu_A 342 LE---E--ENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGM-MASIALTPNKASRAKFASEPGTIGYICRERCFAN- 414 (472)
T ss_dssp HH---H--TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETT-EEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHT-
T ss_pred HH---H--hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc-eEEEEEecCccccccccchhHHHHHHHHHHHHHC-
Confidence 21 1 12334444 4555555555443 2333444554 6667765321100 0 11256788888877
Q ss_pred cEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 394 KLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 394 gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
||.+.|+. +++||+.. ..+++++++++++|++++++..
T Consensus 415 Gv~v~~~g-------~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 415 NLIMRHVG-------DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp TBCCEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999852 68999954 3389999999999999988754
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-26 Score=226.69 Aligned_cols=302 Identities=14% Similarity=0.202 Sum_probs=206.5
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEE
Q 046900 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKI 169 (442)
Q Consensus 91 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v 169 (442)
|++..|..++++++++.+.+.+| ++ ++++++++++++.+++.++ +++||.|+++.|+|..+...+.. .|+++
T Consensus 34 ~~~~~g~~~l~~~l~~~la~~~g----~~--~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~g~~~ 106 (418)
T 2c81_A 34 SGYWTGEESMERKFAKAFADFNG----VP--YCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAVLN-VNALP 106 (418)
T ss_dssp TSBCCSSCCHHHHHHHHHHHHHT----CS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHH-TTCEE
T ss_pred cCcccCCHHHHHHHHHHHHHHhC----CC--cEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHHHH-cCCEE
Confidence 66666755555555555555444 22 5666777789999999999 89999999999999999998884 89999
Q ss_pred EEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC-CC
Q 046900 170 VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA-FS 248 (442)
Q Consensus 170 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~-~~ 248 (442)
+.+++++ ++|.+|++.|++.+++ ++++|+++ ||||...+ +++|+++|+++|++||+||+|+.+. ++
T Consensus 107 ~~~~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~---~~~G~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~~ 173 (418)
T 2c81_A 107 VFVDVEA-DTYCIDPQLIKSAITD------KTKAIIPV---HLFGSMAN---MDEINEIAQEHNLFVIEDCAQSHGSVWN 173 (418)
T ss_dssp EEECBCT-TTCSBCHHHHGGGCCT------TEEEECCB---CCTTCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEET
T ss_pred EEEecCC-CCCCcCHHHHHHhhCC------CCeEEEEe---CCcCCccc---HHHHHHHHHHCCCEEEEECcccccCccC
Confidence 9999875 3578999999988764 77877754 58998765 7888899999999999999999865 44
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEecC--cccCCCCCceeEEEeecCHHHHHHHHHccccC--------------C---
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVYSL--SKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT--------------L--- 309 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~S~--SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~--------------~--- 309 (442)
+....+ .. .+.+.|| ||.+|. | |+||++++++.+.+.++.....+ .
T Consensus 174 ~~~~~~------------~~-~~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (418)
T 2c81_A 174 NQRAGT------------IG-DIGAFSCQQGKVLTA-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLV 238 (418)
T ss_dssp TEETTS------------SS-SEEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEE
T ss_pred CEeccc------------cc-ceEEEeccCCcccCC-C-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhcc
Confidence 321111 11 1567788 999985 8 99999996666666554322110 0
Q ss_pred -----------CcHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee-cCCc-eEEEE----Eec
Q 046900 310 -----------ISSQTQYLLA-SMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECL-KGNA-GLFCW----MNL 370 (442)
Q Consensus 310 -----------~s~~~q~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~-g~~~~----~~~ 370 (442)
++ ..+.++. ..++ ++++..++.++.++++.+.|.+. |+++. .+++ +...| +.+
T Consensus 239 ~~~~~~g~~~~~~-~~~aa~~~~~l~-------~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~ 310 (418)
T 2c81_A 239 KKGDIQGSNYCLS-EFQSAILLDQLQ-------ELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRF 310 (418)
T ss_dssp ECCSSCCCBCCCC-HHHHHHHHHHHT-------THHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEE
T ss_pred ccccccCcCCCcC-HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEE
Confidence 11 1122211 1111 23445556666778888899876 78776 4555 33332 566
Q ss_pred CCcccccChhhHHHHHHHHHHcCcEE---EeCCCCCC---------------------------CCC-------CCEEEE
Q 046900 371 SPLLEEQTREGELALWDSMLHEVKLN---ISPGSSCH---------------------------CSE-------PGWFRV 413 (442)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~l~~~~gi~---v~pg~~f~---------------------------~~~-------~~~iRl 413 (442)
+.... .. .+..++.+.|.+++||. +.+|.... ... .+.+||
T Consensus 311 ~~~~~-~~-~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl 388 (418)
T 2c81_A 311 DPVKF-GG-LNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVI 388 (418)
T ss_dssp CGGGT-TT-CCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEE
T ss_pred ccccc-cc-cCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEe
Confidence 53000 00 02567888887666999 88875210 000 158999
Q ss_pred Eee-cC-CHHHHHHHHHHHHHHHHHH
Q 046900 414 CFA-NM-SEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 414 s~~-~~-~~e~i~~~l~~l~~~l~~~ 437 (442)
++. .. ++++++++++.|++++++.
T Consensus 389 ~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 389 HHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp EGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred cCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 996 44 7999999999999988754
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-26 Score=220.37 Aligned_cols=290 Identities=11% Similarity=0.077 Sum_probs=208.2
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh---cCCCCeEEEcCCCCcChHHhHhhhcCcEEE
Q 046900 94 YHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL---ADPGDALLVPTPYYPGFDRDLRWRTGIKIV 170 (442)
Q Consensus 94 ~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l---~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~ 170 (442)
.....++|++++++++ . +++++|+|+++++..++.++ +++||+|+++.|+|+.+...+.. .|++++
T Consensus 31 ~~~~~~l~~~la~~~~--------~--~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~g~~~~ 99 (375)
T 2fnu_A 31 GKRSLLFEEALCEFLG--------V--KHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLE-SGYTPV 99 (375)
T ss_dssp SHHHHHHHHHHHHHHT--------C--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHH-TTCEEE
T ss_pred ChHHHHHHHHHHHHhC--------C--CeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHHHH-CCCEEE
Confidence 4467899999999985 2 28999999999999999999 89999999999999999998885 899999
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
.+++++++ .+|++.|++.+++ ++++|++++| ||.+.+ +++|.++|+++|++||+|++|+.+.....
T Consensus 100 ~~~~~~~~--~~d~~~l~~~i~~------~~~~v~~~~~---tG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~~ 165 (375)
T 2fnu_A 100 FAGIKNDG--NIDELALEKLINE------RTKAIVSVDY---AGKSVE---VESVQKLCKKHSLSFLSDSSHALGSEYQN 165 (375)
T ss_dssp ECCBCTTS--SBCGGGSGGGCCT------TEEEEEEECG---GGCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEETT
T ss_pred EeccCCCC--CCCHHHHHhhcCc------CceEEEEeCC---cCCccC---HHHHHHHHHHcCCEEEEECccccCCeECC
Confidence 99987643 6899999988754 7888888876 999988 67888899999999999999985432110
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCc--ccCCCCCceeEEEee-cCHHHHHHHHHccccC------------------C
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLS--KDLGLPGFRVGTIYS-YNDKVVTTARRMSSFT------------------L 309 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~S--K~~g~~G~RiG~i~~-~~~~~~~~~~~~~~~~------------------~ 309 (442)
.. + .. .+ .+++.|+| |.+|. | +|++++ +++.+.+.++.....+ .
T Consensus 166 --~~---~-~~-----~~-~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (375)
T 2fnu_A 166 --KK---V-GG-----FA-LASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFR 230 (375)
T ss_dssp --EE---T-TS-----SS-SEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCC
T ss_pred --ee---c-cc-----cC-CeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCC
Confidence 01 1 10 12 36778888 99974 6 688877 4566666555432111 2
Q ss_pred CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC-----CceEEEEEecCCcccccChhhHH
Q 046900 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKG-----NAGLFCWMNLSPLLEEQTREGEL 383 (442)
Q Consensus 310 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~ 383 (442)
++.+...+....+ + ++++..++++++++++.+.|++. |+++..+ ..++++|+.++... ..+..
T Consensus 231 ~~~~~~a~~~~~~---~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 299 (375)
T 2fnu_A 231 LNEIQSALGLSQL---K----KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF----FTCKK 299 (375)
T ss_dssp CCHHHHHHHHHHH---T----THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG----GGGHH
T ss_pred CCHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccc----cchHH
Confidence 2333222222111 1 24566777888899999999887 7777654 13345577776410 00256
Q ss_pred HHHHHHHHcCcEEEeCCCCCCCC---------------------CCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 384 ALWDSMLHEVKLNISPGSSCHCS---------------------EPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 384 ~l~~~l~~~~gi~v~pg~~f~~~---------------------~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
++.+.|.++ ||.+..+ |.+. ..+++||+++ ..+++++++++++|++++++.
T Consensus 300 ~l~~~L~~~-gi~v~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 300 LILESLHKR-GILAQVH--YKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp HHHHHHHHT-TEECBCC--CCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCcccc--ccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 788888665 9999832 2110 0267999997 237999999999999998764
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-27 Score=234.96 Aligned_cols=319 Identities=14% Similarity=0.208 Sum_probs=208.1
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCC-----C----CeEEEcCCCCcChHHh
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADP-----G----DALLVPTPYYPGFDRD 160 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~-----g----d~Vl~~~p~y~~~~~~ 160 (442)
.|+...+..+||++++++++ .+++++|+|+++++.+++.+++++ | |.|++..+.|..+...
T Consensus 69 ~y~~~~~~~~l~~~la~~~~----------~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~ 138 (467)
T 2oqx_A 69 AYSGSRSYYALAESVKNIFG----------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGH 138 (467)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHH
T ss_pred eeccCchhHHHHHHHHHHhC----------cCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEecccccccchhh
Confidence 57777788999999999974 368999999999999999999888 8 9988774333434444
Q ss_pred HhhhcCcEEEEEecC----CC----CCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC-CcCCCHHHHHHHHHHHHh
Q 046900 161 LRWRTGIKIVPIHCD----SS----NNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPL-GATIQRSVLEELLDFATR 231 (442)
Q Consensus 161 ~~~~~G~~v~~v~~~----~~----~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPt-G~~~~~~~l~~l~~~~~~ 231 (442)
... .|+.++..... .. .++.+|++.|++++++.. ..++++|++++|+||| |.+++.+.+++|+++|++
T Consensus 139 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~ 215 (467)
T 2oqx_A 139 SQI-NGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHH-TTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred hhc-cCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHH
Confidence 443 67766654211 11 235689999999998521 1268899999999998 899999999999999999
Q ss_pred cCcEEEEeccCCc----------CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC-CceeEEEeecCH---HH
Q 046900 232 KNIHLVSDEIYSG----------SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP-GFRVGTIYSYND---KV 297 (442)
Q Consensus 232 ~~~~vi~De~y~~----------~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~-G~RiG~i~~~~~---~~ 297 (442)
||+++|+|+++.. ..+.+. +...+..+. ....+ +++.|+||.+|++ | ||++++++ ..
T Consensus 216 ~gi~li~D~a~~~e~~~~~~~~~~~~~g~---~~~~~~~~~-~~~~d--~~~~s~sK~~g~~~G---g~~~~~~~~~~~~ 286 (467)
T 2oqx_A 216 YDIPVVMDSARFAENAYFIKQREAEYKDW---TIEQITRET-YKYAD--MLAMSAKKDAMVPMG---GLLCMKDDSFFDV 286 (467)
T ss_dssp TTCCEEEECTTHHHHHHHHHHHCGGGTTS---CHHHHHHHH-GGGCS--EEEEESSSTTCCSSC---EEEEECSGGGHHH
T ss_pred cCCEEEEEchhhhhhhhhcccccccccCc---cHHHHhhhh-hccCC--eEEEecccccCCCCc---eEEEecChhHHHH
Confidence 9999999965432 123332 333333100 00023 3478999999876 4 88888655 22
Q ss_pred HHHHHHcc----c---cCCCcHHHHHHHHHHhcCchhHHHHHH-HHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEe
Q 046900 298 VTTARRMS----S---FTLISSQTQYLLASMLSNKKFTENYIK-TNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMN 369 (442)
Q Consensus 298 ~~~~~~~~----~---~~~~s~~~q~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~ 369 (442)
...++... . ....+.....++...+. ++++ ...+...++++++.+.|++.|+++. +.+++++|++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~ 359 (467)
T 2oqx_A 287 YTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY------DGMNLDWLAYRIAQVQYLVDGLEEIGVVCQ-QAGGHAAFVD 359 (467)
T ss_dssp HHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHHHHTTCCEE-EECSSCEEEE
T ss_pred HHHHHHhhhccCCcccccchhhhHHHHHHHhhH------hhhhHHHHHHHHHHHHHHHHHHHHCCCeee-cCCceEEEEe
Confidence 23333221 1 11222222222222111 1111 2234456778888899988888888 7788899998
Q ss_pred cCC---cccccChhhHHHHHHHHHHcCcEEEeCCCCC--CC---------CCCCEEEEEee-c-CCHHHHHHHHHHHHHH
Q 046900 370 LSP---LLEEQTREGELALWDSMLHEVKLNISPGSSC--HC---------SEPGWFRVCFA-N-MSEQTLEVALKRIHNF 433 (442)
Q Consensus 370 ~~~---~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f--~~---------~~~~~iRls~~-~-~~~e~i~~~l~~l~~~ 433 (442)
++. ......+ +..++++.|++++||.+.|+..| +. ...+++|++++ . .+++++++++++|+++
T Consensus 360 ~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~ 438 (467)
T 2oqx_A 360 AGKLLPHIPADQF-PAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHV 438 (467)
T ss_dssp HHHHSTTSCGGGC-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHH
T ss_pred chhhcccCCcccc-cHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 742 1111111 14567888844459999995532 11 01378999998 2 4899999999999999
Q ss_pred HHHHH
Q 046900 434 MQKRE 438 (442)
Q Consensus 434 l~~~~ 438 (442)
+++..
T Consensus 439 l~~~~ 443 (467)
T 2oqx_A 439 KENAA 443 (467)
T ss_dssp HHSGG
T ss_pred Hhhhh
Confidence 87643
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-26 Score=221.57 Aligned_cols=280 Identities=18% Similarity=0.176 Sum_probs=190.5
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhH----hhhcCcEEE
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDL----RWRTGIKIV 170 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~~G~~v~ 170 (442)
....++++.++++++ . ++.++++++++++..++.+++++||+|+++.|+|+.+...+ . ..|++++
T Consensus 65 ~~~~~l~~~la~~~g--------~--~~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-~~g~~~~ 133 (398)
T 1gc0_A 65 PTLNLLEARMASLEG--------G--EAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIG-EFGVKLR 133 (398)
T ss_dssp HHHHHHHHHHHHHHT--------C--SEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGG-GGTCEEE
T ss_pred hHHHHHHHHHHHHhC--------C--CcEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHH-HcCCEEE
Confidence 456788888888764 2 25555556689999999999999999999999999887665 4 4799999
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
.++.+ |++.+++.+++ ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|..+.+..
T Consensus 134 ~~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~- 196 (398)
T 1gc0_A 134 HVDMA-------DLQALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR- 196 (398)
T ss_dssp EECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC-
T ss_pred EECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 88752 78999988864 7899999999999999997 8888999999999999999998654321
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee-EEEeecCHHHHHHHHHccc--c-CCCcHHHHHHHHHHhcCch
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV-GTIYSYNDKVVTTARRMSS--F-TLISSQTQYLLASMLSNKK 326 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri-G~i~~~~~~~~~~~~~~~~--~-~~~s~~~q~~~~~~l~~~~ 326 (442)
++ . .+..+++.|+||.++.+|.|+ ||++++++.+.+.++.... . +..+++.+.++...++.
T Consensus 197 ---~~----~------~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 261 (398)
T 1gc0_A 197 ---PL----E------LGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-- 261 (398)
T ss_dssp ---GG----G------GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT--
T ss_pred ---ch----h------hCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccch--
Confidence 11 1 145688999999999899998 9999854444434443222 2 34677777777666653
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCC-C--------------eeec----CCceEEEEEecCCcccccChhhHHHHHH
Q 046900 327 FTENYIKTNRERLQKRYQMIIEGLRSAG-I--------------ECLK----GNAGLFCWMNLSPLLEEQTREGELALWD 387 (442)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~--------------~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 387 (442)
+....+...++.+.+.+.|.+.. + ++.. ..++ ++.++++. ..+...
T Consensus 262 -----~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~---------~~~~~~ 326 (398)
T 1gc0_A 262 -----LNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGG-MIAFELKG---------GIGAGR 326 (398)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTT-EEEEEETT---------HHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCce-EEEEEECC---------CHHHHH
Confidence 22334445556666667776531 1 1111 1344 44456653 122344
Q ss_pred HHHHcCcEEEeC---CCCC------------C---------CCCCCEEEEEeecC-CHHHHHHHHHHHHH
Q 046900 388 SMLHEVKLNISP---GSSC------------H---------CSEPGWFRVCFANM-SEQTLEVALKRIHN 432 (442)
Q Consensus 388 ~l~~~~gi~v~p---g~~f------------~---------~~~~~~iRls~~~~-~~e~i~~~l~~l~~ 432 (442)
.++++.|+.++. |+.+ . +..++++|||++.. ++++++.+.+.|++
T Consensus 327 ~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 327 RFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA 396 (398)
T ss_dssp HHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHh
Confidence 455666877765 3221 0 01247999999842 45556666655554
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-26 Score=224.63 Aligned_cols=282 Identities=15% Similarity=0.117 Sum_probs=190.2
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH----hHhhhcCcEEE
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR----DLRWRTGIKIV 170 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~~G~~v~ 170 (442)
.+..++|+++|++++ .+ ++++++++++++.+++. ++++||+|+++.|.|+.... .++ ..|++++
T Consensus 55 ~~~~~lr~~la~~~g--------~~--~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~-~~G~~v~ 122 (393)
T 1n8p_A 55 PNRENLERAVAALEN--------AQ--YGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVAN-AHGVETS 122 (393)
T ss_dssp HHHHHHHHHHHHHTT--------CS--EEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTST-TTCSCCE
T ss_pred hhHHHHHHHHHHHhC--------CC--cEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHH-HcCcEEE
Confidence 357899999999875 22 45566666999999999 88999999999999985444 344 3799999
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhc----CcEEEEeccCCcCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK----NIHLVSDEIYSGSA 246 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~----~~~vi~De~y~~~~ 246 (442)
.++++ | ++|++++++ ++++|++++|+||||.+++ +++|+++|+++ |+++|+|++|+.+.
T Consensus 123 ~v~~~-------d-~~l~~~i~~------~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~ 185 (393)
T 1n8p_A 123 FTNDL-------L-NDLPQLIKE------NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPY 185 (393)
T ss_dssp EESSH-------H-HHHHHHSCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHH
T ss_pred EeCCC-------h-HHHHHhccc------CceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccc
Confidence 98754 6 778877753 7899999999999999998 78888999999 99999999999765
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee-EEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhc
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV-GTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLS 323 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri-G~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~ 323 (442)
+. . . ..+ +..+++.|+||.+|.+|+|+ ||++++++.+.+.+...... ...++..+.++...++
T Consensus 186 ~~-~-~---~~~---------~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~ 251 (393)
T 1n8p_A 186 IS-N-P---LNF---------GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLK 251 (393)
T ss_dssp HC-C-G---GGG---------TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred cC-C-H---HHc---------CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc
Confidence 42 1 1 111 35588999999999899999 99998556666665543222 2345555555555554
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhCC--Ce-eecC---------------C--c-eEEEEEecCCcccccChhhH
Q 046900 324 NKKFTENYIKTNRERLQKRYQMIIEGLRSAG--IE-CLKG---------------N--A-GLFCWMNLSPLLEEQTREGE 382 (442)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-~~~~---------------~--~-g~~~~~~~~~~~~~~~~~~~ 382 (442)
. +....+...++++.+.+.|.+.. +. +..| . . +.++++.++... .+.
T Consensus 252 ~-------~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-----~~~ 319 (393)
T 1n8p_A 252 T-------LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA-----EAA 319 (393)
T ss_dssp T-------HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH-----HHH
T ss_pred h-------HHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcH-----HHH
Confidence 2 22334445566667777776652 22 1111 1 2 557888886421 134
Q ss_pred HHHHHHHHHcCcEEEeCCCC----------CC-----------CCCCCEEEEEeecC-CHHHHHHHHHHHHH
Q 046900 383 LALWDSMLHEVKLNISPGSS----------CH-----------CSEPGWFRVCFANM-SEQTLEVALKRIHN 432 (442)
Q Consensus 383 ~~l~~~l~~~~gi~v~pg~~----------f~-----------~~~~~~iRls~~~~-~~e~i~~~l~~l~~ 432 (442)
..+...+ +..++.+..|+. +. +..++.+|+|++.. ++++++.+.+.|.+
T Consensus 320 ~~~l~~l-~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~ 390 (393)
T 1n8p_A 320 SKFASST-RLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQ 390 (393)
T ss_dssp HHHHHHC-SSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHhhC-CcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHH
Confidence 4555544 333555554432 11 01247899999842 45556665655554
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-25 Score=219.89 Aligned_cols=283 Identities=14% Similarity=0.161 Sum_probs=197.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----HhhhcCcEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD----LRWRTGIKIVP 171 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~~G~~v~~ 171 (442)
...++|+++|++++ .+ +.|++++|+ +++..++.+++++||+|+++.|.|..+... ++ ..|++++.
T Consensus 115 ~~~~l~~~lA~l~g--------~~-~~v~~~sG~-~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~-~~G~~v~~ 183 (445)
T 1qgn_A 115 TTVVLEEKISALEG--------AE-STLLMASGM-CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILP-KMGITATV 183 (445)
T ss_dssp HHHHHHHHHHHHHT--------CS-EEEEESCHH-HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGG-GGTCEEEE
T ss_pred HHHHHHHHHHHHhC--------CC-cEEEeCCHH-HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHH-HcCCEEEE
Confidence 45688888888874 22 456665555 999999999999999999999999986653 44 37999999
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCce-eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRV-RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~-~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
++.+ |++.|++++++ ++ ++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+...+. .
T Consensus 184 v~~~-------d~~~l~~ai~~------~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~-~ 246 (445)
T 1qgn_A 184 IDPA-------DVGALELALNQ------KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQ-K 246 (445)
T ss_dssp ECSS-------CHHHHHHHHHH------SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC-C
T ss_pred eCCC-------CHHHHHHHhcc------CCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC-C
Confidence 8753 78999999986 67 99999999999999998 778889999999999999999864321 1
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHccc-cCC-CcHHHHHHHHHHhcCchh
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSS-FTL-ISSQTQYLLASMLSNKKF 327 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~-~~~-~s~~~q~~~~~~l~~~~~ 327 (442)
+ .. .+..+++.|+||.+|..| +++||+++ ++.+.+.+..... ++. .+++...++...++.
T Consensus 247 ---~-~~---------~g~Div~~S~sK~~gg~gd~~~G~l~~-~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~--- 309 (445)
T 1qgn_A 247 ---A-LA---------LGADLVLHSATKFLGGHNDVLAGCISG-PLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT--- 309 (445)
T ss_dssp ---T-TT---------TTCSEEEECTTTTTTCSSSCCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG---
T ss_pred ---c-cc---------cCCEEEEECCcccccccccceEEEEEE-CHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHH---
Confidence 1 11 134478999999998554 47999999 5556555543332 222 345444444444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CC-eeecC----------------CceEEEEEecCCcccccChhhHHHHHHHH
Q 046900 328 TENYIKTNRERLQKRYQMIIEGLRSA-GI-ECLKG----------------NAGLFCWMNLSPLLEEQTREGELALWDSM 389 (442)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~l~~~l 389 (442)
+....+...++++.+.+.|++. ++ .+..| ..|.++++.++... +....+...+
T Consensus 310 ----l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~-----~~~~~~l~~l 380 (445)
T 1qgn_A 310 ----LHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL-----LTTAKFVDAL 380 (445)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH-----HHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH-----HHHHHHHHhC
Confidence 2333445566677888888876 44 33322 13457788886521 1244555544
Q ss_pred HHcCcEEEeCCCCCCC---------------------CCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 390 LHEVKLNISPGSSCHC---------------------SEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 390 ~~~~gi~v~pg~~f~~---------------------~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
+..++.+..|+.+.. ..++.||||++. |+++.+++.|++++++
T Consensus 381 -~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~---Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 381 -KIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV---EDFDDLKADILQALDS 444 (445)
T ss_dssp -SSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred -CCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 333788888876421 124799999984 4689999999988764
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=216.24 Aligned_cols=302 Identities=16% Similarity=0.173 Sum_probs=205.6
Q ss_pred cCCCcc--hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCc
Q 046900 91 FQDYHG--LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGI 167 (442)
Q Consensus 91 Y~~~~g--~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~ 167 (442)
|.+..| ..++|+++|++++ .++|++|+|+++++.+++.++ +++||.|+++.|+|+.+...+.. .|+
T Consensus 26 ~~~~~g~~~~~l~~~la~~~~----------~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~~-~g~ 94 (394)
T 1o69_A 26 YIAPLGEFVNRFEQSVKDYSK----------SENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICY-LKA 94 (394)
T ss_dssp TTSCTTHHHHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHH-TTC
T ss_pred CccCCChHHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHH-cCC
Confidence 444456 8999999999985 278999999999999999999 89999999999999999998885 899
Q ss_pred EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCC-cCC
Q 046900 168 KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYS-GSA 246 (442)
Q Consensus 168 ~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~-~~~ 246 (442)
+++.+++++ +|.+|++.|++.+++. ..++++|++++ |||...+ +++|.++|+++|+++|+||+|+ .+.
T Consensus 95 ~~~~v~~~~--~~~~d~~~l~~~i~~~---~~~~~~v~~~~---~~G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~ 163 (394)
T 1o69_A 95 KPVFIDCDE--TYNIDVDLLKLAIKEC---EKKPKALILTH---LYGNAAK---MDEIVEICKENDIVLIEDAAEALGSF 163 (394)
T ss_dssp EEEEECBCT--TSSBCHHHHHHHHHHC---SSCCCEEEEEC---GGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCE
T ss_pred EEEEEEeCC--CCCcCHHHHHHHHhcc---cCCceEEEEEC---CCCChhh---HHHHHHHHHHcCCEEEEECcCcccce
Confidence 999999873 5789999999998751 11478888885 8997665 7888889999999999999998 444
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCC----------------C
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL----------------I 310 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~----------------~ 310 (442)
+.+....+ + .. +.+.||||..+++|.|+||++++++.+.+.++.....+. .
T Consensus 164 ~~~~~~~~---~---------~~-~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 230 (394)
T 1o69_A 164 YKNKALGT---F---------GE-FGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRL 230 (394)
T ss_dssp ETTEETTS---S---------SS-EEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBC
T ss_pred eCCccccc---c---------cC-cEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCc
Confidence 43321111 0 11 345566433334567999999965677666655333221 1
Q ss_pred cHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC----ceE-EEEEecCCcc-----------
Q 046900 311 SSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN----AGL-FCWMNLSPLL----------- 374 (442)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~g~-~~~~~~~~~~----------- 374 (442)
+.....++...+ ++ +++..++++++++++.+.|.+. +++.++. +++ .+++.++...
T Consensus 231 ~~~~aa~~l~~l---~~----l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 302 (394)
T 1o69_A 231 SNVLGAIGVAQM---EV----LEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQKDIN 302 (394)
T ss_dssp CHHHHHHHHHHH---TT----HHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEE
T ss_pred CHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhcccccccccc
Confidence 222222222112 22 3456677788889999999877 6555442 343 3566665310
Q ss_pred ----cccChhhHHHHHHHHHHcCcEEEeCCCCCC---C--CCC-------------CEEEEEe-ecCCHHHHHHHHHHHH
Q 046900 375 ----EEQTREGELALWDSMLHEVKLNISPGSSCH---C--SEP-------------GWFRVCF-ANMSEQTLEVALKRIH 431 (442)
Q Consensus 375 ----~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~---~--~~~-------------~~iRls~-~~~~~e~i~~~l~~l~ 431 (442)
......+..++.+.|.++ ||.+++|.... + ..- ..+|+.. ...++++++++++.|+
T Consensus 303 ~~~~~~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~ 381 (394)
T 1o69_A 303 ISQKNITLHPKISKLIEDLKNK-QIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLIL 381 (394)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHT-TCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred ccccccccccCHHHHHHHHHHc-CCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHH
Confidence 000001356788888665 99999985320 0 000 2234333 3348999999999999
Q ss_pred HHHHH
Q 046900 432 NFMQK 436 (442)
Q Consensus 432 ~~l~~ 436 (442)
+++..
T Consensus 382 ~~~~~ 386 (394)
T 1o69_A 382 KSIKA 386 (394)
T ss_dssp HHHC-
T ss_pred HHHhc
Confidence 88764
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-26 Score=226.48 Aligned_cols=345 Identities=12% Similarity=0.059 Sum_probs=205.7
Q ss_pred CCCCCceeeeeccc--cccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLAE--NQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+||++.+. +.++ ++.+.+.+.+..... ....|+. +.+.++++.+.+..+ .
T Consensus 49 d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~----------~~~~~~~-----~~~~~la~~l~~~~~-----~ 108 (429)
T 4e77_A 49 DVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERG----------LSFGAPT-----EMEVKMAQLVTDLVP-----T 108 (429)
T ss_dssp ETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC----------SCCSSCC-----HHHHHHHHHHHHHST-----T
T ss_pred ECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC----------cccCCCC-----HHHHHHHHHHHhhCC-----C
Confidence 34466789998765 3442 455555555443210 0112322 344444444444322 4
Q ss_pred CCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCcEE--EEEecCCCCCC------------cCC
Q 046900 120 LNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGIKI--VPIHCDSSNNF------------QIT 183 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~~v--~~v~~~~~~~~------------~~d 183 (442)
+++|++|+|+++++..+++... .+++.|++.+++|.++...+....|... ...+... ++ ..|
T Consensus 109 ~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d 186 (429)
T 4e77_A 109 MDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSP--GVPTDFAKHTLTCTYND 186 (429)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCT--TSCGGGGTTEEEECTTC
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcC--CCCCccCCceeecCCCC
Confidence 7899999999999999988543 3567899999999876542211111111 1111100 00 017
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCC--CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhh
Q 046900 184 PQALEAAYKEAESKDMRVRGVLITNPSNPLGATI--QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEA 261 (442)
Q Consensus 184 ~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~--~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~ 261 (442)
++.|++.+++. +.++ ++++++|+||+|-+. +.+.+++|.++|++||+++|+||+|.++ ..+.. ........
T Consensus 187 ~~~le~~l~~~---~~~~-~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~-~~~~~~~~- 259 (429)
T 4e77_A 187 LASVRQAFEQY---PQEV-ACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALA-GAQDYYHV- 259 (429)
T ss_dssp HHHHHHHHHHS---TTTE-EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTT-CHHHHTTC-
T ss_pred HHHHHHHHHhc---CCCE-EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcc-hHHHhcCC-
Confidence 89999998752 1244 466778876655333 3455999999999999999999999987 44432 11211111
Q ss_pred hcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH-----ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHH
Q 046900 262 RQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR-----MSSFTLISSQTQYLLASMLSNKKFTENYIKTNR 336 (442)
Q Consensus 262 ~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~-----~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 336 (442)
... +.||||.++ +|+|+||+++ ++.+.+.+.. ....+..+++++.++.+.++.... ++++++.+
T Consensus 260 -----~pd---i~t~sK~~~-~G~~~G~~~~-~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~ 328 (429)
T 4e77_A 260 -----IPD---LTCLGKIIG-GGMPVGAFGG-RREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ-VGVYETLT 328 (429)
T ss_dssp -----CCS---EEEEEGGGG-TTSCCEEEEE-CHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS-TTHHHHHH
T ss_pred -----CCC---eeeeccccc-CCCCeEEEEE-CHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHH
Confidence 122 358999998 8999999998 5666665543 222356788888888777762110 11223333
Q ss_pred HHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccc--------cChhhHHHHHHHHHHcCcEEEeCCCCCCCCCC
Q 046900 337 ERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEE--------QTREGELALWDSMLHEVKLNISPGSSCHCSEP 408 (442)
Q Consensus 337 ~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~ 408 (442)
+.....++.|.+.+.+.++....+..|+|+|++++..... .......++++.|+++ ||.+.|+..
T Consensus 329 ~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~------ 401 (429)
T 4e77_A 329 ELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSAF------ 401 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSSTT------
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecCC------
Confidence 3333333444444444555544555677899998753100 0112346788888887 999998642
Q ss_pred CEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 409 GWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 409 ~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
..+|+++.. +++++++++++|++++++
T Consensus 402 ~~~~~~~~~-t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 402 EAGFMSLAH-SNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp SCEECCTTC-CHHHHHHHHHHHHHHHTT
T ss_pred CCEEEeccC-CHHHHHHHHHHHHHHHHh
Confidence 347777665 899999999999998753
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-26 Score=220.56 Aligned_cols=289 Identities=16% Similarity=0.217 Sum_probs=206.0
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcE
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIK 168 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~ 168 (442)
.|.+..+..++|+++|++++ .+++++++|+++++..++.++ +++||.|+++.|+|..+...+.. .|++
T Consensus 30 ~~~~~~~~~~l~~~la~~~~----------~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~~-~G~~ 98 (367)
T 3nyt_A 30 QYILGPEVTELEDRLADFVG----------AKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVAL-LGAK 98 (367)
T ss_dssp CCSSCHHHHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHH-TTCE
T ss_pred CccCChHHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHH-cCCE
Confidence 35455678999999999985 348999999999999999999 89999999999999999999884 8999
Q ss_pred EEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcC-CC
Q 046900 169 IVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGS-AF 247 (442)
Q Consensus 169 v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~-~~ 247 (442)
++.++++++ .+.+|++.|++++++ ++++|+ |+||||...+ +++|.++|+++|+++|+|++|+.. .+
T Consensus 99 ~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~---~~~~~G~~~~---~~~i~~la~~~~~~li~D~a~~~g~~~ 165 (367)
T 3nyt_A 99 PVYVDIDPR-TYNLDPQLLEAAITP------RTKAII---PVSLYGQCAD---FDAINAIASKYGIPVIEDAAQSFGASY 165 (367)
T ss_dssp EEEECBCTT-TCSBCGGGTGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCCBEEECTTTTTCEE
T ss_pred EEEEecCCc-cCCcCHHHHHHhcCc------CCcEEE---eeCCccChhh---HHHHHHHHHHcCCEEEEECccccCCeE
Confidence 999998864 478999999998854 777766 8899998877 777888899999999999999852 22
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecC--cccCCCCCceeEEEeecCHHHHHHHHHcccc--------------CCCc
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSL--SKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--------------TLIS 311 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~--SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--------------~~~s 311 (442)
++..... .+ .+++.|| +|.+|.+|. .|+++++++.+.+.++..... +.++
T Consensus 166 ~~~~~~~------------~~-di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~ 231 (367)
T 3nyt_A 166 KGKRSCN------------LS-TVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLD 231 (367)
T ss_dssp TTEETTS------------SS-SEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCC
T ss_pred CCeeccC------------CC-CEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCcc
Confidence 2221111 11 3677887 899985576 899999778777776653321 3345
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec-CCc---eE-EEEEecCCcccccChhhHHHHH
Q 046900 312 SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK-GNA---GL-FCWMNLSPLLEEQTREGELALW 386 (442)
Q Consensus 312 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~---g~-~~~~~~~~~~~~~~~~~~~~l~ 386 (442)
++.+.++...++. +++..++.++.++++.+.|.+.++.+.. +.+ ++ ++++.++. ..++.
T Consensus 232 ~~~aa~~~~~l~~-------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~ 295 (367)
T 3nyt_A 232 TLQAAILLPKLEI-------FEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMDN---------RESVQ 295 (367)
T ss_dssp HHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECSS---------HHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeCC---------HHHHH
Confidence 5555555444432 2333444556667778888877655432 122 11 23333332 56788
Q ss_pred HHHHHcCcEEEeCCCC--------CC-CCC---------CCEEEEEee-cCCHHHHHHHHHHHHHH
Q 046900 387 DSMLHEVKLNISPGSS--------CH-CSE---------PGWFRVCFA-NMSEQTLEVALKRIHNF 433 (442)
Q Consensus 387 ~~l~~~~gi~v~pg~~--------f~-~~~---------~~~iRls~~-~~~~e~i~~~l~~l~~~ 433 (442)
+.|.++ ||.++++.. |. ... ...+||++. .+++++++..++.|++.
T Consensus 296 ~~L~~~-GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 296 ASLKAA-GVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HHHHHH-TCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred HHHHHC-CCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 888777 999887542 10 000 136899886 45899999999998875
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-25 Score=216.21 Aligned_cols=283 Identities=18% Similarity=0.202 Sum_probs=192.2
Q ss_pred ccCCC--cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----Hhh
Q 046900 90 LFQDY--HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD----LRW 163 (442)
Q Consensus 90 ~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~ 163 (442)
.|+.. ....++++.++++++ .+++++|+|+++++..++.+++++||+|+++.|+|...... ++
T Consensus 49 ~y~~~~~~~~~~l~~~la~~~g----------~~~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~- 117 (412)
T 2cb1_A 49 VYARQKDPTAKALEERLKALEG----------ALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLS- 117 (412)
T ss_dssp SBTTTCCHHHHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTT-
T ss_pred CcCCCCChHHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHH-
Confidence 45433 457888888888875 34899999999999999999999999999999999876554 33
Q ss_pred hcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCC
Q 046900 164 RTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYS 243 (442)
Q Consensus 164 ~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~ 243 (442)
..|++++.++. |+++|++.+++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+
T Consensus 118 ~~g~~~~~~~~--------~~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~ 180 (412)
T 2cb1_A 118 LMGVTVRYVDP--------EPEAVREALSA------KTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFG 180 (412)
T ss_dssp TTTCEEEEECS--------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred HcCCEEEEECC--------CHHHHHHHhcc------CCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCc
Confidence 37999998874 47888888764 7899999999999999997 8888999999999999999998
Q ss_pred cCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecC-H--------------------------H
Q 046900 244 GSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYN-D--------------------------K 296 (442)
Q Consensus 244 ~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~-~--------------------------~ 296 (442)
.+.+... +. . .+..+++.|+||.++.+|.|+|++++.+ . .
T Consensus 181 ~~~~~~~---~~----~------~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 247 (412)
T 2cb1_A 181 AAGALCR---PL----A------WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARC 247 (412)
T ss_dssp TTTTSCC---GG----G------GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGH
T ss_pred cccccCC---cc----c------cCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHH
Confidence 7522111 11 1 1456889999999988999999988755 2 2
Q ss_pred HHHHHHHcc--ccC-CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee-cC-----------
Q 046900 297 VVTTARRMS--SFT-LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECL-KG----------- 360 (442)
Q Consensus 297 ~~~~~~~~~--~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~----------- 360 (442)
+.+.++... ..+ ..++....++...++. +....++..++.+++.+.|.+. ++... .|
T Consensus 248 ~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~ 320 (412)
T 2cb1_A 248 FPERVRTLGLSLCGMALSPFNAYLLFQGLET-------VALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNA 320 (412)
T ss_dssp HHHHHHHHHTTTTCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHH
T ss_pred HHHHHHHHHHHhcCCCCChHHhHHHHcCCch-------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHH
Confidence 233333321 122 2234433333333321 2233344556778888888876 66633 12
Q ss_pred -----CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCC---------CCC---------------CCCCEE
Q 046900 361 -----NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSS---------CHC---------------SEPGWF 411 (442)
Q Consensus 361 -----~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~---------f~~---------------~~~~~i 411 (442)
..+.++.+.+ . + ...+. .++++.||.+ .|+. +.. ..++.+
T Consensus 321 ~~~~~~~~~iv~~~~-~--~------~~~~~-~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~i 389 (412)
T 2cb1_A 321 RKYLASGGPILTLDL-G--D------LERAS-RFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLV 389 (412)
T ss_dssp HHHCSSSCSEEEEEC-S--S------HHHHH-HHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEE
T ss_pred HHhCCCCceEEEEEe-C--C------HHHHH-HHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeE
Confidence 1234666676 3 1 23333 3445569998 7741 110 015789
Q ss_pred EEEeecC-CHHHHHHHHHHHH
Q 046900 412 RVCFANM-SEQTLEVALKRIH 431 (442)
Q Consensus 412 Rls~~~~-~~e~i~~~l~~l~ 431 (442)
|+|++.- ++++++.+++.|+
T Consensus 390 R~s~g~~~~~~~i~~l~~al~ 410 (412)
T 2cb1_A 390 RVSVGLEDPLDLLALFEEALE 410 (412)
T ss_dssp EEECCSSCHHHHHHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHHHHh
Confidence 9999842 4566666666654
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-25 Score=215.05 Aligned_cols=279 Identities=15% Similarity=0.178 Sum_probs=193.9
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----HhhhcCcEEE
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD----LRWRTGIKIV 170 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~~G~~v~ 170 (442)
....+|++++|++++ . +++++++++++++..++.+++++||+|+++.|+|..+... ++ ..|++++
T Consensus 59 ~~~~~l~~~la~~~g--------~--~~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~-~~g~~~~ 127 (389)
T 3acz_A 59 PTVEQFEEMVCSIEG--------A--AGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLP-RFGIEVD 127 (389)
T ss_dssp HHHHHHHHHHHHHHT--------C--SEEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHH-HTTCEEE
T ss_pred hHHHHHHHHHHHHhC--------C--CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHH-HcCCEEE
Confidence 356789999999875 2 2666777778999999999999999999999999986665 45 4899999
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
.++. .|++.+++.+++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|..+.+. .
T Consensus 128 ~v~~-------~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~-~ 190 (389)
T 3acz_A 128 LIDT-------SDVEKVKAAWKP------NTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFL-K 190 (389)
T ss_dssp EECT-------TCHHHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC-C
T ss_pred EECC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccc-C
Confidence 9885 378999988764 7899999999999999998 788899999999999999999876532 1
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee-EEEeecCHHHHHHHHHccc-c-CCCcHHHHHHHHHHhcCchh
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV-GTIYSYNDKVVTTARRMSS-F-TLISSQTQYLLASMLSNKKF 327 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri-G~i~~~~~~~~~~~~~~~~-~-~~~s~~~q~~~~~~l~~~~~ 327 (442)
++ . .+..+++.|+||.++.+|.|+ ||++++++.+.+.++.... . ...++..+.++...++..
T Consensus 191 ---~~-~---------~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l-- 255 (389)
T 3acz_A 191 ---PL-E---------LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTL-- 255 (389)
T ss_dssp ---GG-G---------TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH--
T ss_pred ---cc-c---------cCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccHH--
Confidence 11 1 145588999999999899998 9999966355555554332 2 334666666666666532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---------------Ceeec----CCceEEEEEecCCcccccChhhHHHHHHH
Q 046900 328 TENYIKTNRERLQKRYQMIIEGLRSAG---------------IECLK----GNAGLFCWMNLSPLLEEQTREGELALWDS 388 (442)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~L~~~g---------------~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (442)
....+...++.+.+.+.|++.. +++.. ..++ ++.+.++. ..+ ...
T Consensus 256 -----~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~-~~~~~l~~---------~~~-~~~ 319 (389)
T 3acz_A 256 -----PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGS-TFLFEMKS---------FEA-AKK 319 (389)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCS-EEEEEESS---------HHH-HHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCe-EEEEEECC---------HHH-HHH
Confidence 1222333445555556665531 11111 1244 55566643 122 334
Q ss_pred HHHcCcEEEeC---C------CCCCC---------------CCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 389 MLHEVKLNISP---G------SSCHC---------------SEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 389 l~~~~gi~v~p---g------~~f~~---------------~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
++++.||.+.+ | ..+.. ..++++|||++. ++.++.++.|.++++
T Consensus 320 ~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---~~~~~li~~l~~al~ 387 (389)
T 3acz_A 320 LMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI---ENVDDIIADLKQALE 387 (389)
T ss_dssp HHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHT
T ss_pred HHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 45666888776 3 22211 125799999986 357777888877764
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-26 Score=225.42 Aligned_cols=297 Identities=12% Similarity=0.091 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc---C-----------CCCeEEEcCCCCcChHHhHhhh
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA---D-----------PGDALLVPTPYYPGFDRDLRWR 164 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~---~-----------~gd~Vl~~~p~y~~~~~~~~~~ 164 (442)
+.+.++++.+.+.++ ...+++|++|+|+++++..+++.+. . +||.|++.+|+|.++...+...
T Consensus 101 ~~~~~la~~la~~~~---~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~ 177 (449)
T 2cjg_A 101 VAMARFVETFARVLG---DPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSL 177 (449)
T ss_dssp HHHHHHHHHHHHHHC---CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGT
T ss_pred HHHHHHHHHHHHhcC---CCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhh
Confidence 334444444444332 1357899999999999999987543 2 2899999999998765432211
Q ss_pred cC--------c-----EEEEEecCCCCCC--------cCCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCC-cCCCHHH
Q 046900 165 TG--------I-----KIVPIHCDSSNNF--------QITPQALEAAYKEAESKDMRVRGVLITNP-SNPLG-ATIQRSV 221 (442)
Q Consensus 165 ~G--------~-----~v~~v~~~~~~~~--------~~d~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG-~~~~~~~ 221 (442)
.| . +++.+|.++.+.. ..+++.|++.+++. +.++++| +++| +|||| .+.+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~~v-i~ep~~~~~G~~~~~~~~ 253 (449)
T 2cjg_A 178 TNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR---PHDIACF-VAEPIQGEGGDRHFRPEF 253 (449)
T ss_dssp CCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS---TTTEEEE-EECSEETTTTCEECCHHH
T ss_pred cCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc---CCceEEE-EEeCcCCCCCCccCCHHH
Confidence 22 2 4556665431001 24556688888642 2366654 4556 68999 5889999
Q ss_pred HHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHH-
Q 046900 222 LEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT- 300 (442)
Q Consensus 222 l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~- 300 (442)
+++|.++|++||+++|+||+|.++.+.+. +..+..... ... +.||||.+ |+||++++ +.+.+.
T Consensus 254 l~~l~~l~~~~g~lli~DEv~~g~g~~g~-~~~~~~~~~------~~d---i~t~sK~l-----~iG~~~~~-~~~~~~l 317 (449)
T 2cjg_A 254 FAAMRELCDEFDALLIFDEVQTGCGLTGT-AWAYQQLDV------APD---IVAFGKKT-----QVCGVMAG-RRVDEVA 317 (449)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSTHHHHTC------CCS---EEEECGGG-----SSEEEEEC-GGGGGST
T ss_pred HHHHHHHHHHCCcEEEEeccccCCCccCc-ceeecccCC------Cce---EEEecCcc-----cEEEEEEC-HHHhhhh
Confidence 99999999999999999999998766654 222222211 122 23789988 79999995 455543
Q ss_pred ----HHH--ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-----C-CeeecCCceEEEEE
Q 046900 301 ----ARR--MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-----G-IECLKGNAGLFCWM 368 (442)
Q Consensus 301 ----~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g-~~~~~~~~g~~~~~ 368 (442)
+.. ....+..++++|.++.+.++.. .+ ....++++++++++.+.|++. + +....+.|. |+++
T Consensus 318 ~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~-~~~~ 391 (449)
T 2cjg_A 318 DNVFAVPSRLNSTWGGNLTDMVRARRILEVI---EA--EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGL-MCAF 391 (449)
T ss_dssp TCTTTSTTSSCCSSSSCHHHHHHHHHHHHHH---HH--HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETT-EEEE
T ss_pred hhcccCCcccccCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccE-EEEE
Confidence 111 1223556788898888877632 11 234455666677777777643 2 444555555 6677
Q ss_pred ecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 369 NLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+++... ...++++.|+++ ||.+.|+. .+++|++++ ..+++++++++++|++++++.
T Consensus 392 ~~~~~~------~~~~~~~~l~~~-Gv~v~~~g------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 392 SLPTTA------DRDELIRQLWQR-AVIVLPAG------ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp ECSSHH------HHHHHHHHHHHT-TEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EECChH------HHHHHHHHHHHC-CeEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 886521 356788888876 99999862 478999765 238999999999999998764
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=224.77 Aligned_cols=296 Identities=17% Similarity=0.242 Sum_probs=202.7
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEE
Q 046900 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKI 169 (442)
Q Consensus 91 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v 169 (442)
|.+..+..++|+++|++++ .+++++++|+++++..++.++ +++||.|+++.|+|..+...++. .|+++
T Consensus 32 ~~~~~~~~~l~~~la~~~~----------~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~-~g~~~ 100 (373)
T 3frk_A 32 FILGDEDKKFEQEFADYCN----------VNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAVSY-TGAKP 100 (373)
T ss_dssp CSSSHHHHHHHHHHHHHHT----------SSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHHH-HSCEE
T ss_pred ccCCchHHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHH-cCCEE
Confidence 5556788999999999986 348999999999999999999 89999999999999999998885 89999
Q ss_pred EEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC-CC
Q 046900 170 VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA-FS 248 (442)
Q Consensus 170 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~-~~ 248 (442)
+.++++++ ++.+|+++|++.+++ ++++|+ |+||||.+.+ +++|.++|+++|+++|+|++|+... ++
T Consensus 101 ~~~~~~~~-~~~~d~~~l~~~l~~------~~~~v~---~~n~~G~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~~ 167 (373)
T 3frk_A 101 IFVEPDIR-TYNIDPSLIESAITE------KTKAII---AVHLYGQPAD---MDEIKRIAKKYNLKLIEDAAQAHGSLYK 167 (373)
T ss_dssp EEECEETT-TTEECGGGTGGGCCT------TEEEEE---EECCTTCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEET
T ss_pred EEEecccc-ccCcCHHHHHHhcCC------CCeEEE---EECCCcCccc---HHHHHHHHHHcCCEEEEECCcccCCEEC
Confidence 99998753 578999999988764 777776 7789999887 7788888999999999999998532 22
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEecCc--ccCCCCCceeEEEeecCHHHHHHHHHcccc--------------CCCcH
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVYSLS--KDLGLPGFRVGTIYSYNDKVVTTARRMSSF--------------TLISS 312 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~S~S--K~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--------------~~~s~ 312 (442)
+..... -..+++.||| |.++.+| +.|+++++++.+.+.++..... +.++.
T Consensus 168 ~~~~~~-------------~~d~~~~S~~~~K~l~~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 233 (373)
T 3frk_A 168 GMKVGS-------------LGDAAGFSFYPAKNLGSLG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDE 233 (373)
T ss_dssp TEETTS-------------SSSEEEEECCTTSSSCCSS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCH
T ss_pred CEeccc-------------cccEEEEeCcCCCccCccc-eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCH
Confidence 211100 0126678877 9886325 4899998777776665543321 11233
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec-CCceEEEEEecCCcccccChhhHHHHHHHHHH
Q 046900 313 QTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK-GNAGLFCWMNLSPLLEEQTREGELALWDSMLH 391 (442)
Q Consensus 313 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 391 (442)
+...+....+. .+++..++.++..+++.+.|.+.++.+.. +.++...|..++-... +..++.+.|.+
T Consensus 234 ~~aa~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L~~ 301 (373)
T 3frk_A 234 LQAGFLRVKLK-------YLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRSE-----KRDELQKYLNN 301 (373)
T ss_dssp HHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEES-----SHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEeC-----CHHHHHHHHHH
Confidence 33333222222 23444555566677777888766643321 1222222211111000 25678888877
Q ss_pred cCcEEEeCCCCCCC--------------CC-------CCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 392 EVKLNISPGSSCHC--------------SE-------PGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 392 ~~gi~v~pg~~f~~--------------~~-------~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+ ||.++++..... .. .+.+||++. ..++++++++++.|+++..++
T Consensus 302 ~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~~ 368 (373)
T 3frk_A 302 N-GIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLEH 368 (373)
T ss_dssp T-TBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC---
T ss_pred C-CCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 6 999987641110 00 157999986 448999999999999877654
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-25 Score=224.14 Aligned_cols=323 Identities=13% Similarity=0.168 Sum_probs=226.0
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC--------CC-----C-eEEEcCCCCc
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD--------PG-----D-ALLVPTPYYP 155 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~--------~g-----d-~Vl~~~p~y~ 155 (442)
.|....+...+++++.+++.+.+|. +.+++++++|+|+++++..++.++.. +| + .|+++.+.|+
T Consensus 123 ~~~~~~~~~~le~~~~~~la~~~g~--~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~ 200 (504)
T 2okj_A 123 TYEIAPVFVLMEQITLKKMREIVGW--SSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHY 200 (504)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHHTC--CSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCT
T ss_pred chhhChHHHHHHHHHHHHHHHHhCC--CCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchH
Confidence 3554556678899999999988772 22277999999999999999888753 56 6 7899999999
Q ss_pred ChHHhHhhhcCc---EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhc
Q 046900 156 GFDRDLRWRTGI---KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK 232 (442)
Q Consensus 156 ~~~~~~~~~~G~---~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~ 232 (442)
.+...+.. .|. +++.+|+++ ++.+|+++|++++.+...++.++++|++++|+||||.+.+ +++|+++|++|
T Consensus 201 s~~~~~~~-~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~I~~la~~~ 274 (504)
T 2okj_A 201 SIKKAGAA-LGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEKY 274 (504)
T ss_dssp HHHHHHHH-TTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCcccEEEEecCC--CCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHc
Confidence 99988885 676 899999864 5789999999999875555557899999999999999977 78888999999
Q ss_pred CcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHH-HHHccccC---
Q 046900 233 NIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT-ARRMSSFT--- 308 (442)
Q Consensus 233 ~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~-~~~~~~~~--- 308 (442)
|+++++|++|+.+.+....+.....-.. ...+++.|++|.++.| .++|++++.++.+... +.....+.
T Consensus 275 g~~lhvD~a~~~~~~~~~~~~~~~~g~~-------~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~~~ 346 (504)
T 2okj_A 275 NLWLHVDAAWGGGLLMSRKHRHKLNGIE-------RANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAGYLFQP 346 (504)
T ss_dssp TCEEEEEETTGGGGGGCTTTGGGGTTGG-------GCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSSCCS
T ss_pred CCEEEEehhhhhHHHhCHhhHhhcCCcc-------cCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCccccCC
Confidence 9999999999986654322211111001 1125677999999755 7899999966544332 22211111
Q ss_pred -------------------CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec---CCceEE
Q 046900 309 -------------------LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK---GNAGLF 365 (442)
Q Consensus 309 -------------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~---~~~g~~ 365 (442)
...++.+.++...+. .+.+++..++..+.++++.+.|++. |+++.. |..+++
T Consensus 347 ~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v 421 (504)
T 2okj_A 347 DKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG-----TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNV 421 (504)
T ss_dssp CCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCE
T ss_pred cccccCcCCcccCCCCCCCCccHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEE
Confidence 012455555555554 2345667778888899999999886 888764 677777
Q ss_pred EEEecCCcccc--cC-------hhhHHHHHHHHHHcCcE-EEeCCCCCCCCCCCEEEEEeec--CCHHHHHHHHHHHHHH
Q 046900 366 CWMNLSPLLEE--QT-------REGELALWDSMLHEVKL-NISPGSSCHCSEPGWFRVCFAN--MSEQTLEVALKRIHNF 433 (442)
Q Consensus 366 ~~~~~~~~~~~--~~-------~~~~~~l~~~l~~~~gi-~v~pg~~f~~~~~~~iRls~~~--~~~e~i~~~l~~l~~~ 433 (442)
++...+..... .. .....++.+.|.++ |+ .+.++. +. ...+++|+++++ .+++++++++++|+++
T Consensus 422 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~-~~-~~~~~lRis~~~~~~t~edi~~~~~~l~~~ 498 (504)
T 2okj_A 422 CFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQP-QG-DKANFFRMVISNPAATQSDIDFLIEEIERL 498 (504)
T ss_dssp EEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEE-ET-TEEEEEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEeCccccccccchhhHHHHHHHHHHHHHHHHhC-CcEEEEeeE-EC-CceEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 66544431100 00 00135678888887 75 444322 32 123689999971 2899999999999988
Q ss_pred HHH
Q 046900 434 MQK 436 (442)
Q Consensus 434 l~~ 436 (442)
+++
T Consensus 499 ~~~ 501 (504)
T 2okj_A 499 GQD 501 (504)
T ss_dssp HTC
T ss_pred HHH
Confidence 754
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=220.85 Aligned_cols=281 Identities=18% Similarity=0.169 Sum_probs=191.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH----hHhhhcCcEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR----DLRWRTGIKIVP 171 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~~G~~v~~ 171 (442)
...+|++.+|++++ .+..++++++++++..++.+++++||.|+++.|+|..+.. .+. ..|++++.
T Consensus 83 ~~~~le~~lA~l~g----------~~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~-~~G~~~~~ 151 (430)
T 3ri6_A 83 TVEDLEQRLKNLTG----------ALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLP-SFGIEVRF 151 (430)
T ss_dssp HHHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHH-HTTCEEEE
T ss_pred HHHHHHHHHHHHHC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHH-HcCCEEEE
Confidence 45778888888764 2345666677899999999999999999999999988776 455 48999999
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
++.+ |++.|++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+...+..
T Consensus 152 v~~~-------d~~~l~~ai~~------~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~~-- 213 (430)
T 3ri6_A 152 VDVM-------DSLAVEHACDE------TTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLLE-- 213 (430)
T ss_dssp ECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTCC--
T ss_pred eCCC-------CHHHHHHhhCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence 9864 78999998864 8899999999999999998 7788899999999999999998644311
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEee--cCHHH------------------HHHHHH-c-ccc-C
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYS--YNDKV------------------VTTARR-M-SSF-T 308 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~--~~~~~------------------~~~~~~-~-~~~-~ 308 (442)
+ .. .+..+++.|+||.+|.+|..+|.+++ .+..+ ....+. . ... .
T Consensus 214 --~-~~---------~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~ 281 (430)
T 3ri6_A 214 --A-KR---------LGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGP 281 (430)
T ss_dssp --G-GG---------GTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCC
T ss_pred --h-HH---------cCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCC
Confidence 1 11 13458899999999866655555544 22111 111111 1 112 2
Q ss_pred CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-eecCC----------------ceEEEEEec
Q 046900 309 LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIE-CLKGN----------------AGLFCWMNL 370 (442)
Q Consensus 309 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~g~~~~~~~ 370 (442)
.+++...+.+...+ +.+....++..++...+.+.|++. +++ +..|. ||+.+|+++
T Consensus 282 ~~~~~~a~l~l~~l-------~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l 354 (430)
T 3ri6_A 282 SLSPHNAYLQSLGL-------ETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFEL 354 (430)
T ss_dssp CCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEC
T ss_pred CCCHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEE
Confidence 23443333222222 223444556677888888999876 555 33333 666899998
Q ss_pred CCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC---------------------CCCCEEEEEeecCCHHHHHHHHHH
Q 046900 371 SPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC---------------------SEPGWFRVCFANMSEQTLEVALKR 429 (442)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~---------------------~~~~~iRls~~~~~~e~i~~~l~~ 429 (442)
+.. .++.++.+.+ +..++.+.+|..+.. ..+++||||++. |+.+.+++.
T Consensus 355 ~~~------~~~~~~~~~l-~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~---E~~~dl~~d 424 (430)
T 3ri6_A 355 ESK------EASYRFMDAL-KLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI---EEIEDLKED 424 (430)
T ss_dssp SSH------HHHHHHHHHC-SSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS---SCHHHHHHH
T ss_pred CCH------HHHHHHHHhC-CcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHH
Confidence 732 2356666665 333777788876651 235789999986 445666666
Q ss_pred HHHHH
Q 046900 430 IHNFM 434 (442)
Q Consensus 430 l~~~l 434 (442)
|++++
T Consensus 425 l~~al 429 (430)
T 3ri6_A 425 ILQAL 429 (430)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 66654
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-25 Score=220.19 Aligned_cols=321 Identities=14% Similarity=0.125 Sum_probs=222.5
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCcc-----CCCcEEEecChHHHHHHHHHhhcCC---------CC----------
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKF-----DLNRIVVTAGATAANELLTFILADP---------GD---------- 145 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-----~~~~i~~t~G~~~ai~~~~~~l~~~---------gd---------- 145 (442)
.|....+..++++++++++.+.+|..... ...++++|+|+|+++..++.++.++ ||
T Consensus 104 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~ 183 (486)
T 1js3_A 104 SWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKL 183 (486)
T ss_dssp SGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHE
T ss_pred ccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCE
Confidence 45555668899999999999988732110 1357899999999999888765321 42
Q ss_pred eEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHH
Q 046900 146 ALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEEL 225 (442)
Q Consensus 146 ~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l 225 (442)
.|+++.++|+.+...++. .|++++.+|+++ ++.+|+++|++++++..+.+..+.+|++++|+||||.+-+ +++|
T Consensus 184 ~v~~s~~~h~s~~~~~~~-~G~~v~~v~~d~--~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~---l~~I 257 (486)
T 1js3_A 184 VAYASDQAHSSVERAGLI-GGVKLKAIPSDG--KFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN---LLEV 257 (486)
T ss_dssp EEEEETTCCHHHHHHHHH-HTCEEEEECCCT--TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHH
T ss_pred EEEECCCCcHHHHHHHHh-CCCceEEeecCC--CCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCC---HHHH
Confidence 378899999999999985 899999999863 6789999999999875444444568899999999998855 8889
Q ss_pred HHHHHhcCcEEEEeccCCcCCCCCCCcccH-HHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHH-HHHHHH
Q 046900 226 LDFATRKNIHLVSDEIYSGSAFSSSEFVSI-AEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKV-VTTARR 303 (442)
Q Consensus 226 ~~~~~~~~~~vi~De~y~~~~~~~~~~~s~-~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~-~~~~~~ 303 (442)
+++|++||+++++|++|+.+.+..+.+... ..+ .. -+ .++.|+||.++.| +++||++++++.. .+.+..
T Consensus 258 ~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~-~~-----ad--si~~~~hK~~~~p-~~~G~l~~~~~~~l~~~~~~ 328 (486)
T 1js3_A 258 GPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGV-EF-----AD--SFNFNPHKWLLVN-FDCSAMWVKRRTDLTGAFKL 328 (486)
T ss_dssp HHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTG-GG-----CS--EEEECHHHHSSCC-SSCEEEEESCHHHHHGGGC-
T ss_pred HHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCc-cc-----cC--eeEEchhhhcCCC-cceEEEEEeCHHHHHHHhcC
Confidence 999999999999999999755432222221 111 11 12 3457899999755 8999999976653 322210
Q ss_pred cccc--------------------C--CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec-
Q 046900 304 MSSF--------------------T--LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK- 359 (442)
Q Consensus 304 ~~~~--------------------~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~- 359 (442)
...+ . ....+.+.++...+. .+.+++..+++.++++++.+.|++. |+++..
T Consensus 329 ~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 403 (486)
T 1js3_A 329 DPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG-----VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAE 403 (486)
T ss_dssp -----------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSC
T ss_pred CchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC
Confidence 0000 0 112345555544442 2346677788888899999999887 888764
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeec--CCHHHHHHHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFAN--MSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~e~i~~~l~~l~~~l~~~ 437 (442)
|..+++.| .++... ....++.+.|.++ |+.+.++..|. +.+++|+++.. .+++++++++++|++++++.
T Consensus 404 ~~~~~v~f-~~~~~~-----~~~~~l~~~L~~~-g~~~~~~~~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~ 474 (486)
T 1js3_A 404 VTLGLVCF-RLKGSD-----GLNEALLERINSA-RKIHLVPCRLR--GQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (486)
T ss_dssp CCSSEEEE-EESSCH-----HHHHHHHHHHHHH-TSCBCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CceeEEEE-EecChH-----HHHHHHHHHHHhc-CCEEEEEEEEC--CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 66665554 444210 1246788888777 75443333332 35789999863 27889999999999998776
Q ss_pred Hh
Q 046900 438 ER 439 (442)
Q Consensus 438 ~~ 439 (442)
.+
T Consensus 475 ~~ 476 (486)
T 1js3_A 475 LA 476 (486)
T ss_dssp HC
T ss_pred Hh
Confidence 54
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-25 Score=222.13 Aligned_cols=317 Identities=12% Similarity=0.066 Sum_probs=219.8
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEE---EecChHHHHHHHHHhhcCC--------CC-----eEEEcCCCC
Q 046900 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIV---VTAGATAANELLTFILADP--------GD-----ALLVPTPYY 154 (442)
Q Consensus 91 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~---~t~G~~~ai~~~~~~l~~~--------gd-----~Vl~~~p~y 154 (442)
|..+.+..++++.+.+++.+.+|. +.+++++. +|+|+++++.+++.++..+ |+ .|+++.++|
T Consensus 87 ~~~~p~~~~le~~~~~~la~l~g~--~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h 164 (502)
T 3hbx_A 87 MDEYPVTTELQNRCVNMIAHLFNA--PLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQ 164 (502)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTC--CCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCC
T ss_pred hhcChhHHHHHHHHHHHHHHHhCC--CcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCch
Confidence 334456788999999999988772 22255544 4999999999998887655 76 899999999
Q ss_pred cChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhc--
Q 046900 155 PGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK-- 232 (442)
Q Consensus 155 ~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~-- 232 (442)
..+...++. .|++++.+|+++ +++.+|+++|++++.+ ++++|++++|+||||.+.+ +++|.++|+++
T Consensus 165 ~s~~~~~~~-~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~ 233 (502)
T 3hbx_A 165 VCWEKFARY-FEVELKEVKLSE-GYYVMDPQQAVDMVDE------NTICVAAILGSTLNGEFED---VKLLNDLLVEKNK 233 (502)
T ss_dssp HHHHHHHHH-TTCEEEEECCBT-TBCSCCHHHHHHHCCT------TEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCceeEEEecCC-CcCcCCHHHHHHHHhh------CCEEEEEecCCCCCCcccC---HHHHHHHHHHhhh
Confidence 999999985 999999999875 3478999999999875 7889999999999999988 67778888888
Q ss_pred ----CcEEEEeccCCcCCC---CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHH-HHHHHc
Q 046900 233 ----NIHLVSDEIYSGSAF---SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVV-TTARRM 304 (442)
Q Consensus 233 ----~~~vi~De~y~~~~~---~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~-~~~~~~ 304 (442)
++++++|++|+.+.. .+.....+. ..+-..+..|.+|.++ ++.++||+++.++... ..+...
T Consensus 234 ~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~---------~~~~D~v~~s~hK~l~-~p~g~G~~~~~~~~~l~~~~~~~ 303 (502)
T 3hbx_A 234 ETGWDTPIHVDAASGGFIAPFLYPELEWDFR---------LPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELIFH 303 (502)
T ss_dssp HHCCCCCEEEECTTGGGTHHHHCTTCCCSTT---------STTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEE
T ss_pred ccCCCCeEEEECCccchhhhhhCcccccccC---------CCCceEEEECcccccC-CCCCeEEEEEeCHHHhhHHhccC
Confidence 999999999986541 111111110 0133455678999774 7788999888654432 221111
Q ss_pred ccc-----------CC---CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecC-CceEEEEE
Q 046900 305 SSF-----------TL---ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAG-IECLKG-NAGLFCWM 368 (442)
Q Consensus 305 ~~~-----------~~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~~g~~~~~ 368 (442)
..+ +. .....+.++...+.. +.+.+..++..+.++++.+.|++.+ +++..+ ....++.+
T Consensus 304 ~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f 378 (502)
T 3hbx_A 304 INYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGH-----EGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAF 378 (502)
T ss_dssp ECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEE
T ss_pred cccccCCCCCccccCCchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEE
Confidence 111 00 122334444444332 2345667777788889999999885 888765 33346666
Q ss_pred ecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCC-CCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 369 NLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCH-CSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~-~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
.++.... .+..++.+.|.++ ||.+....... ..+..++|++++ ..++++++.+++.|+++++..++.
T Consensus 379 ~~~~~~~----~~~~~l~~~L~~~-Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~~~ 447 (502)
T 3hbx_A 379 SLKDSSC----HTEFEISDMLRRY-GWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDEL 447 (502)
T ss_dssp EESSCSS----CCHHHHHHHHHTT-TCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EecCCCc----CCHHHHHHHHHhC-CcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 7654211 1245788888666 99875432211 123468999997 337999999999999999876553
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-25 Score=218.99 Aligned_cols=301 Identities=10% Similarity=0.066 Sum_probs=207.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChH-HHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhhcCcEEEEEe
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGAT-AANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTGIKIVPIH 173 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~-~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~ 173 (442)
..++.+++.+++.+.+| ++++ +++|+|++ .++.+++.++.. +|+.|+++.+.|+.+...++. .|++++.++
T Consensus 131 ~~~~~~~~~~~la~~~g----~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~-~G~~~~~v~ 204 (456)
T 2z67_A 131 MYALTNKILESFFKQLG----LNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSF-VGMNMRLVE 204 (456)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH-TTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHcC----CCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHH-cCCCceEEE
Confidence 56677777788777766 4445 99999999 455545555433 678899999999999998885 899999988
Q ss_pred cCC-CCCCcCCHHHHHHHH-HHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 174 CDS-SNNFQITPQALEAAY-KEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 174 ~~~-~~~~~~d~~~l~~~l-~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
+.+ +.++.+|+++|++++ ++.. ..++.+|++++|+||||.+.+ +++|.++|+++|+++++|++|+.+.++
T Consensus 205 ~~~~~~~~~~d~~~l~~~i~~~~~--~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g--- 276 (456)
T 2z67_A 205 TVLDGDRVYVPVEDIENAIKKEIE--LGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNY--- 276 (456)
T ss_dssp CEEETTEEECCHHHHHHHHHHHHH--TTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH---
T ss_pred EeccCCCCCcCHHHHHHHHHHHhh--CCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHH---
Confidence 732 245789999999999 4211 126677888999999999987 778888899999999999999865431
Q ss_pred cccH-HHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCC-Cc-HHHHHHHHHHhcCchhH
Q 046900 252 FVSI-AEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL-IS-SQTQYLLASMLSNKKFT 328 (442)
Q Consensus 252 ~~s~-~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~-~s-~~~q~~~~~~l~~~~~~ 328 (442)
..+. ...... ..-+++.|++|.++ +++++||++++++.+.+.+......+. .+ .+.+.++...+.
T Consensus 277 ~~~~~~~~~~~------~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~----- 344 (456)
T 2z67_A 277 YLEKLKKAFKY------RVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG----- 344 (456)
T ss_dssp HHHHHHHHHTS------CCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-----
T ss_pred hhHHHHHhhCC------CCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHH-----
Confidence 1111 111110 11246789999765 678999999966666555533221111 11 334444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCceEEEEEec--CCcccccChhhHHHHHHHHHHcCcE---EEe-
Q 046900 329 ENYIKTNRERLQKRYQMIIEGLRSA----GIECLKGNAGLFCWMNL--SPLLEEQTREGELALWDSMLHEVKL---NIS- 398 (442)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~gi---~v~- 398 (442)
.+.+++..+.+.++++++.+.|++. |+.+.+++ + ++++.+ +.. ..++.+.|.++ || .+.
T Consensus 345 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~-~-~v~~~~~~~~~--------~~~l~~~L~~~-gi~~~rv~~ 413 (456)
T 2z67_A 345 SKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE-S-PIASCISVNSD--------PVEIAAKLYNL-RVTGPRGIK 413 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC-C-SSEEEEECSSC--------HHHHHHHHHHT-TEESCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC-C-eEEEEEecccH--------HHHHHHHHHHc-CCCcceEEe
Confidence 2346677888889999999999876 87777776 4 555665 321 35677788776 65 343
Q ss_pred -----CCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHH
Q 046900 399 -----PGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 399 -----pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l 434 (442)
+|..|.....+++|++++ ..+++++++++++|++++
T Consensus 414 ~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 414 KTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp TTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ecCccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 244443333579999988 338999999999998754
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-24 Score=206.74 Aligned_cols=302 Identities=11% Similarity=0.115 Sum_probs=210.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH--HhHhhhcC--cEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD--RDLRWRTG--IKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~--~~~~~~~G--~~v~~v 172 (442)
..++.+++++.+.+.++ .+ +.|++|+|+++++..++..+ .+||+|++..++|..+. ..+. ..| .+++.+
T Consensus 33 ~~~~~~~~~~~l~~~~~----~~-~~v~~~~sgt~a~~~~~~~~-~~gd~vi~~~~~~~~~~~~~~~~-~~g~~~~~~~~ 105 (379)
T 3ke3_A 33 FQEVMNDLLSNLKTVYN----AE-AAVIIPGSGTYGMEAVARQL-TIDEDCLIIRNGWFSYRWTQILE-KGKFAKSSTVL 105 (379)
T ss_dssp HHHHHHHHHHHHHHHHT----CS-EEEEEESCHHHHHHHHHHHH-CTTCEEEEEECSHHHHHHHHHHH-HHCCSSEEEEE
T ss_pred HHHHHHHHHHHHHHHhC----CC-CEEEEcCChhHHHHHHHHhC-CCCCeEEEEeCCchhHHHHHHHH-HhCCCCceEEE
Confidence 34666667777766655 33 67999999999999988655 69999999999987643 2333 245 477888
Q ss_pred ecCCCC------CC-cCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcC
Q 046900 173 HCDSSN------NF-QITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGS 245 (442)
Q Consensus 173 ~~~~~~------~~-~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~ 245 (442)
+.+..+ .| .+|++++++.+++. ++++|+++.++||||.+++.+.+++|.++|++||+++|+|++++ .
T Consensus 106 ~~~~~g~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g 179 (379)
T 3ke3_A 106 TAERTEDTEAPKPFAPVDIETAVAKIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G 179 (379)
T ss_dssp ECEESSCCSSCCCEECCCHHHHHHHHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T
T ss_pred eccccccccccCCCCCCCHHHHHHHHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C
Confidence 764311 12 47999999999642 67889999999999999999999999999999999999999986 2
Q ss_pred CCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc--c-----------------
Q 046900 246 AFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS--S----------------- 306 (442)
Q Consensus 246 ~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~--~----------------- 306 (442)
+ ....+... +..+++.|++|.++ .+.++|++++ ++.+.+.+.... .
T Consensus 180 ---~-~~~~~~~~---------~~d~~~~s~~K~l~-~~~g~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 244 (379)
T 3ke3_A 180 ---C-VWLDMKEL---------GIDVLISAPQKGWS-STPCAGLVML-SAAAIKKVESTESNCFSLDLKQWLTIMRAYEN 244 (379)
T ss_dssp ---T-CCCCHHHH---------TCSEEEECTTTTTC-SCCCEEEEEE-CHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHT
T ss_pred ---C-cccccccc---------CCCEEEecchhhcC-CCCceEEEEE-CHHHHHhhhcCCCCceeecHHHHHHHHHhhhc
Confidence 2 22333333 23477889999986 4446899998 455555544211 0
Q ss_pred ----c-CCCcHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHHHHHHHHHHhCCCeeecCC---ceEEEEEecCCccccc
Q 046900 307 ----F-TLISSQTQYLLASMLSNKKFTENY-IKTNRERLQKRYQMIIEGLRSAGIECLKGN---AGLFCWMNLSPLLEEQ 377 (442)
Q Consensus 307 ----~-~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~g~~~~~~~~~~~~~~ 377 (442)
+ ++.+...+.++.+.++ ++.+. +++.+++++++++++.+.|++.|+++..+. ++....+..+.
T Consensus 245 g~~~~~~t~~~~~~~a~~aal~---~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~----- 316 (379)
T 3ke3_A 245 GGHAYHATMPTDSLRQFRDAIL---EAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTER----- 316 (379)
T ss_dssp TSCCCSSCCCHHHHHHHHHHHH---HHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSC-----
T ss_pred cCCCCCCCCCHHHHHHHHHHHH---HHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCC-----
Confidence 1 1345555555555554 22222 567788888999999999999888876543 23233333332
Q ss_pred ChhhHHHHHHHHHHcCcEEEeCCCCCCC---CCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 378 TREGELALWDSMLHEVKLNISPGSSCHC---SEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 378 ~~~~~~~l~~~l~~~~gi~v~pg~~f~~---~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
....+...|.++ ||.+.+|..+.. ...+.+|+++. ..+++++++++++|++++++..
T Consensus 317 ---~~~~~~~~L~~~-Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 317 ---DDMHKGSAFAEA-GLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp ---HHHHSSHHHHHT-TCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ---cchHHHHHHHHC-CeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 112234555454 999999986542 22578999986 2278999999999999998764
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-26 Score=228.98 Aligned_cols=287 Identities=12% Similarity=0.029 Sum_probs=189.7
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEE
Q 046900 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPI 172 (442)
Q Consensus 93 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v 172 (442)
+.....++++.+|+ ++ .+ +++++|+|+++++.+++.+++++||.|+++.|+|..+...+.. .|++++.+
T Consensus 55 ~~~~~~~~~~~la~-~g--------~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~-~G~~~~~v 123 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HS--------DY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDI-SQQEGHFI 123 (446)
T ss_dssp CSSHHHHHHHHHCS-CT--------TE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHH-HTCCEEEC
T ss_pred cchHHHHHHHHHHh-cC--------CC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHH-cCCeEEEE
Confidence 34456788888887 64 23 6899999999999999999999999999999999999998885 89999999
Q ss_pred ec--CCCCC--CcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc-CCC
Q 046900 173 HC--DSSNN--FQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG-SAF 247 (442)
Q Consensus 173 ~~--~~~~~--~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~-~~~ 247 (442)
+. +++.+ +.+|++.| +. .+++++++++ .|+||.+++ +++|+++|++||+++|+||+|+. +.|
T Consensus 124 ~~~~~~~~~~~~~~d~~~l---~~------~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f 190 (446)
T 2x3l_A 124 ETHQSPLTNHYNKVNLSRL---NN------DGHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGL 190 (446)
T ss_dssp EEEECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTS
T ss_pred eCeeccccCcCCCCCHHHH---cC------CCceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhcc
Confidence 88 43211 46778877 22 2788999999 555999998 77889999999999999999986 334
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHH-HHHHHc---cccCCCcHHHHHHHHHHhc
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVV-TTARRM---SSFTLISSQTQYLLASMLS 323 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~-~~~~~~---~~~~~~s~~~q~~~~~~l~ 323 (442)
.+. ..+.... +..+++.|+||.++ ++.++||++++++.+. ..+... ...+..+.....++...++
T Consensus 191 ~~~-~~~~~~~---------g~Di~~~S~~K~l~-~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~ 259 (446)
T 2x3l_A 191 QGF-PDSTLNY---------QADYVVQSFHKTLP-ALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQ 259 (446)
T ss_dssp TTS-CCCGGGG---------TCSEEEECHHHHSS-SCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred CCC-CCChHHc---------CCCEEEECCccccc-cccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 443 2232222 12278899999654 4445899999655332 122211 1122233332222222221
Q ss_pred CchhHHHH-HHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe-CCC
Q 046900 324 NKKFTENY-IKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS-PGS 401 (442)
Q Consensus 324 ~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~-pg~ 401 (442)
++.+. .++..++.++.++.+.+. |+++..+..+.++|+.++.. +..++.+.|.++ ||.+. +|
T Consensus 260 ---~l~~~g~~~~~~~~~~l~~~l~~~----g~~~~~~~~~~~l~i~~~~~-------~~~~l~~~L~~~-GI~v~~~g- 323 (446)
T 2x3l_A 260 ---FYKTYDSTLFFAKRAQLIECLENK----GFEMLQVDDPLKLLIKYEGF-------TGHDIQNWFMNA-HIYLELAD- 323 (446)
T ss_dssp ---HHHHCCCHHHHHHHHHHHHHHHHH----TCEEEECSSTTEEEEECTTS-------CHHHHHHHHHHT-TEEESEEC-
T ss_pred ---HHHHhCHHHHHHHHHHHHHHHHHc----CCEECcCCCCeEEEEEeCCc-------CHHHHHHHHHHC-CCEEEecC-
Confidence 11111 011233333333333333 78877665556789988721 256788888777 99997 43
Q ss_pred CCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHH
Q 046900 402 SCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 402 ~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~ 437 (442)
.+++|++++. .+++++ +++++|+++++..
T Consensus 324 ------~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 324 ------DYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp ------SSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred ------CCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 2579999973 277889 9999999887644
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-24 Score=215.78 Aligned_cols=325 Identities=13% Similarity=0.155 Sum_probs=225.9
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcC--------------CCCeEEEcCCCC
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD--------------PGDALLVPTPYY 154 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~--------------~gd~Vl~~~p~y 154 (442)
..|....+..++++++++|+.+.+|. +.+++.+++|+|+++++..++.++.+ +++.|+++.++|
T Consensus 125 ~~~~~~p~~~~le~~~~~~l~~~~g~--~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H 202 (511)
T 3vp6_A 125 FTYEIAPVFVLMEQITLKKMREIVGW--SSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSH 202 (511)
T ss_dssp SCTTTCHHHHHHHHHHHHHHHHHHTC--CSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSC
T ss_pred CCcccCchHHHHHHHHHHHHHHHhCC--CCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCch
Confidence 45766778899999999999999873 23357899999999999988777654 567899999999
Q ss_pred cChHHhHhhhcCc---EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHh
Q 046900 155 PGFDRDLRWRTGI---KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATR 231 (442)
Q Consensus 155 ~~~~~~~~~~~G~---~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~ 231 (442)
..+...++. .|+ +++.++.++ ++.+|+++|++++++...++..+++|++++|+||||.+-+ +++|+++|++
T Consensus 203 ~s~~~~~~~-~g~g~~~~~~v~~d~--~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~---l~~I~~ia~~ 276 (511)
T 3vp6_A 203 YSIKKAGAA-LGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEK 276 (511)
T ss_dssp THHHHHHHH-TTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC---HHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCCcEEEeecCC--CCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc---HHHHHHHHHH
Confidence 999999985 888 899999875 4789999999999876555556899999999999999965 8899999999
Q ss_pred cCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHH-HHccccC--
Q 046900 232 KNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTA-RRMSSFT-- 308 (442)
Q Consensus 232 ~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~-~~~~~~~-- 308 (442)
||+++++|++|+...+..+.+.....-.. .-..++.+++|.++.| ..+|++++.++.+.... .....+.
T Consensus 277 ~~~~lhvD~a~~~~~~~~~~~~~~~~g~~-------~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~ 348 (511)
T 3vp6_A 277 YNLWLHVDAAWGGGLLMSRKHRHKLNGIE-------RANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASYLFQ 348 (511)
T ss_dssp HTCEEEEEETTGGGGGGCTTTGGGGTTGG-------GCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTTTCC
T ss_pred cCCEEEEEccchhhHhhChhhhhhccCCc-------cCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCccccC
Confidence 99999999999975543322211110000 1124567999998744 67899988666544332 2111110
Q ss_pred --------------------CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec---CCceE
Q 046900 309 --------------------LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK---GNAGL 364 (442)
Q Consensus 309 --------------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~---~~~g~ 364 (442)
....+...++...+. .+.++++.++..++.+++.+.|++. |+++.. |..++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g-----~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~ 423 (511)
T 3vp6_A 349 QDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG-----TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTN 423 (511)
T ss_dssp SSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSC
T ss_pred cccccccccCccCCCCCCCCchHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEE
Confidence 011233333333332 3456778888888999999999887 888765 56665
Q ss_pred EEEEecCCccccc--Ch-------hhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee--cCCHHHHHHHHHHHHHH
Q 046900 365 FCWMNLSPLLEEQ--TR-------EGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA--NMSEQTLEVALKRIHNF 433 (442)
Q Consensus 365 ~~~~~~~~~~~~~--~~-------~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~e~i~~~l~~l~~~ 433 (442)
++|.-.|...... .. ....++.+.|.++ |+.+.. ..+...+.+++|++++ ..++++++.+++.|+++
T Consensus 424 v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~-~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~ 501 (511)
T 3vp6_A 424 VCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVG-YQPQGDKANFFRMVISNPAATQSDIDFLIEEIERL 501 (511)
T ss_dssp EEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEE-EEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEE-EEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 5543334322110 00 0134678888888 754433 1121122357999984 23789999999999887
Q ss_pred HHH
Q 046900 434 MQK 436 (442)
Q Consensus 434 l~~ 436 (442)
-+.
T Consensus 502 ~~~ 504 (511)
T 3vp6_A 502 GQD 504 (511)
T ss_dssp HC-
T ss_pred HHh
Confidence 654
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-24 Score=214.83 Aligned_cols=317 Identities=12% Similarity=0.156 Sum_probs=217.0
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCC-CcEEEecChHHHHHHHHHhh----c---------CC------CC-eEE
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDL-NRIVVTAGATAANELLTFIL----A---------DP------GD-ALL 148 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-~~i~~t~G~~~ai~~~~~~l----~---------~~------gd-~Vl 148 (442)
.|....+..++++++.+++.+.+| +++ +++++|+|+++++..++.++ + .+ |+ .|+
T Consensus 131 ~~~~~~~~~~le~~~~~~la~~~g----~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~ 206 (497)
T 2qma_A 131 SWDQASSATYVEQKVVNWLCDKYD----LSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIV 206 (497)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHHTT----CCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEE
T ss_pred chhhChHHHHHHHHHHHHHHHHhC----CCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEE
Confidence 354445678899998999988876 334 78999999999999988773 2 12 46 799
Q ss_pred EcCCCCcChHHhHhhhcCc---EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHH
Q 046900 149 VPTPYYPGFDRDLRWRTGI---KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEEL 225 (442)
Q Consensus 149 ~~~p~y~~~~~~~~~~~G~---~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l 225 (442)
++.+.|..+...+.. .|. +++.+|+++ ++.+|+++|++.+++....+.++.+|++++|+||||.+.+ +++|
T Consensus 207 ~s~~~h~s~~~~~~~-~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~---l~~I 280 (497)
T 2qma_A 207 CSKKSHFTVQKSASW-MGLGEKAVMTVDANA--DGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD---LDFI 280 (497)
T ss_dssp EETTSCTHHHHHHHH-TTSCGGGEEEECBCT--TSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHH
T ss_pred ECCCchHHHHHHHHH-cCCCcccEEEEecCC--CCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC---HHHH
Confidence 999999999888874 766 799999864 5789999999999864333333457888999999999877 7888
Q ss_pred HHHHHhcCcEEEEeccCCcCCCCCCCccc-HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc
Q 046900 226 LDFATRKNIHLVSDEIYSGSAFSSSEFVS-IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM 304 (442)
Q Consensus 226 ~~~~~~~~~~vi~De~y~~~~~~~~~~~s-~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~ 304 (442)
+++|++||+++++|++|+.+.+... +.. +..+ . ...+++.|+||.++.| .++|++++.++...+.+...
T Consensus 281 ~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi-~-------~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~~~~~ 350 (497)
T 2qma_A 281 ADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGV-E-------RAHSISVDFHKLFYQT-ISCGALLVNDKSNFKFLLHH 350 (497)
T ss_dssp HHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTG-G-------GCSEEEEETTTTTCCC-SSCEEEEESCGGGGGGGCC-
T ss_pred HHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCc-c-------cCCEEEEcchhccCCC-cceEEEEEeCHHHHHHhcCC
Confidence 8999999999999999997665332 111 1111 1 1125677999998755 79999998665533222111
Q ss_pred cccC-C-----C-------------cHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee-cCCce
Q 046900 305 SSFT-L-----I-------------SSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECL-KGNAG 363 (442)
Q Consensus 305 ~~~~-~-----~-------------s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~g 363 (442)
..+. . . ..+.+.++...+. .+.+++..+++.++++++.+.|++. ++++. ++.++
T Consensus 351 ~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 425 (497)
T 2qma_A 351 ADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVG-----PKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLS 425 (497)
T ss_dssp -------------------CCSCCCTHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSS
T ss_pred chhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCce
Confidence 1110 0 0 1222333333332 2345667777888999999999986 88874 45666
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee--cCCHHHHHHHHHHHHHHHHH
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA--NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~e~i~~~l~~l~~~l~~ 436 (442)
++++.+..... ....-..++.+.+.++ |+.+.++..+. +.+++|+++. ..+++++++++++|++++++
T Consensus 426 -~v~f~~~~~~~-~~~~l~~~l~~~l~~~-G~~~~~~~~~~--g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 426 -TVLFRATHETA-DLDELNKALRLEALTR-GIAVLGETIVD--GKTALKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp -EEEEEECCSSS-CHHHHHHHHHHHHHHH-TSCBCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -EEEEEEcCCcc-CHHHHHHHHHHHHHhC-CCEEEEeeEEC--CEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 55566643210 0000134566777777 98887654442 3468999983 33899999999999998765
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=205.50 Aligned_cols=283 Identities=15% Similarity=0.152 Sum_probs=191.5
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh----hcCcEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW----RTGIKIVP 171 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~----~~G~~v~~ 171 (442)
...+|++.+|++.+ .+++++++++++++.. +..++++||+|+++.|+|......+.. ..|++++.
T Consensus 68 ~~~~l~~~la~l~g----------~~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 136 (400)
T 3nmy_A 68 TRFAYERCVAALEG----------GTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSF 136 (400)
T ss_dssp HHHHHHHHHHHHHT----------CSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEE
T ss_pred HHHHHHHHHHHHhC----------CCCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEE
Confidence 34667777777653 3367777777999998 467889999999999999865554331 26999999
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
++.+ |++.+++++++ ++++|++++|+||||.+++ +++|+++|++||+++|+||+|+...+..
T Consensus 137 v~~~-------d~~~l~~~i~~------~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~-- 198 (400)
T 3nmy_A 137 VDLT-------DPAAFKAAIRA------DTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR-- 198 (400)
T ss_dssp ECTT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC--
T ss_pred ECCC-------CHHHHHHHhcc------CCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence 8864 78999998864 7899999999999999998 8888999999999999999998533211
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEE--EeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchh
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGT--IYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKF 327 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~--i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~ 327 (442)
++ . .+..+++.|+||.++.+|.++|. +++.++.+.+.++..... ...++....++...++.
T Consensus 199 --~~-~---------~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~--- 263 (400)
T 3nmy_A 199 --PL-S---------LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKT--- 263 (400)
T ss_dssp --GG-G---------GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTT---
T ss_pred --hh-h---------cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhH---
Confidence 10 0 13458899999999878877755 555567776666543332 34566666665555553
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee-cC----------------CceEEEEEecCCcccccChhhHHHHHHHH
Q 046900 328 TENYIKTNRERLQKRYQMIIEGLRSA-GIECL-KG----------------NAGLFCWMNLSPLLEEQTREGELALWDSM 389 (442)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~----------------~~g~~~~~~~~~~~~~~~~~~~~~l~~~l 389 (442)
+....++..++...+.+.|++. .+... .| ..|.+++++++... +....+.+.+
T Consensus 264 ----l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~-----~~~~~~~~~l 334 (400)
T 3nmy_A 264 ----LPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF-----DAAKRFCEKT 334 (400)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH-----HHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH-----HHHHHHHHcC
Confidence 2334455567777888888765 33322 11 24568888886521 1234455444
Q ss_pred HHcCcEEEeCCCCCCC---------------------CCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 390 LHEVKLNISPGSSCHC---------------------SEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 390 ~~~~gi~v~pg~~f~~---------------------~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
+..++.+..|..+.. -.++.+|||++. |+.+..++.|.+++.
T Consensus 335 -~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl---e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 335 -ELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI---EDLGDLRGDLERALV 397 (400)
T ss_dssp -SSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHC
T ss_pred -CcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc---CCHHHHHHHHHHHHh
Confidence 333555555543320 134789999986 345556677777765
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-23 Score=209.06 Aligned_cols=320 Identities=15% Similarity=0.200 Sum_probs=217.9
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc-------C-CCC------eEEEcCCCCc
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA-------D-PGD------ALLVPTPYYP 155 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~-------~-~gd------~Vl~~~p~y~ 155 (442)
.|....+..++.+.+.+++.+.+| ++++++++|+|+++++..++.++. + +|| .|+++.+.|+
T Consensus 139 ~~~~s~~~~~le~~~~~~la~l~g----~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~ 214 (515)
T 2jis_A 139 TYEIAPVFVLMEEEVLRKLRALVG----WSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHY 214 (515)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHHT----CSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCT
T ss_pred chhhchHHHHHHHHHHHHHHHHhC----CCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccH
Confidence 455556677888888888888776 457899999999999988887763 2 575 8999999999
Q ss_pred ChHHhHhhhcCc---EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhc
Q 046900 156 GFDRDLRWRTGI---KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK 232 (442)
Q Consensus 156 ~~~~~~~~~~G~---~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~ 232 (442)
.+...+.. .|. +++.+|+++ ++.+|+++|++++.+...++.++++|++++|+||||.+.+ +++|+++|+++
T Consensus 215 s~~~~~~~-~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~la~~~ 288 (515)
T 2jis_A 215 SIQKGAAF-LGLGTDSVRVVKADE--RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIADVCQRH 288 (515)
T ss_dssp HHHHHHHH-TTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCCcEEEEecCC--CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHHHHHHc
Confidence 99988885 787 899999874 5679999999999875545556899999999999999987 78888999999
Q ss_pred CcEEEEeccCCcCCCCCCCccc-HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCH-HH-HHHHHHccc---
Q 046900 233 NIHLVSDEIYSGSAFSSSEFVS-IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYND-KV-VTTARRMSS--- 306 (442)
Q Consensus 233 ~~~vi~De~y~~~~~~~~~~~s-~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~-~~-~~~~~~~~~--- 306 (442)
|+++++|++|+.+.+..+.+.. +..+ .+..+++.|++|.++ .+.++|++++.++ .+ ...+.....
T Consensus 289 g~~l~vD~a~~~~~~~~~~~~~~~~g~--------~~aD~v~~s~hK~l~-~p~g~G~l~~~~~~~~~~~~~~~~~~yl~ 359 (515)
T 2jis_A 289 GLWLHVDAAWGGSVLLSQTHRHLLDGI--------QRADSVAWNPHKLLA-AGLQCSALLLQDTSNLLKRCHGSQASYLF 359 (515)
T ss_dssp TCEEEEEETTGGGGGGCTTTGGGGTTG--------GGCSEEEECTTSTTC-CCSCCEEEEESCCSCHHHHHHCC------
T ss_pred CCeEEEehhhhhHHHhChhhHhhcCCC--------ccCCEEEECcccccC-CCCCeeEEEEeChHHHHHHHhcCCchhcc
Confidence 9999999999987654332221 1111 022367789999987 4467999999766 33 332110000
Q ss_pred -----------cC----C----CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec-CCceEE
Q 046900 307 -----------FT----L----ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK-GNAGLF 365 (442)
Q Consensus 307 -----------~~----~----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~g~~ 365 (442)
++ . ...+.+.++...+. .+.+++..++..++++++.+.|++. |+++.. +..+.+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v 434 (515)
T 2jis_A 360 QQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG-----DQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNV 434 (515)
T ss_dssp ---CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEE
T ss_pred CCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEE
Confidence 00 0 11344444444443 2335667778888899999999886 888765 445555
Q ss_pred EEEecCCcccc----cChhh-----HHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee--cCCHHHHHHHHHHHHHHH
Q 046900 366 CWMNLSPLLEE----QTREG-----ELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA--NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 366 ~~~~~~~~~~~----~~~~~-----~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~e~i~~~l~~l~~~l 434 (442)
++...|..... ..... ...+.+.+.+. |+.+...... ....+++|++++ ..+++++++++++|++++
T Consensus 435 ~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~-G~~~~~~~~~-~~~~~~lRis~~~~~~t~edid~~~~~l~~~~ 512 (515)
T 2jis_A 435 CFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQPH-GTRGNFFRVVVANSALTCADMDFLLNELERLG 512 (515)
T ss_dssp EEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEEEE-TTEEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEE-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 55433431110 11101 12356667666 7544211100 112468999995 228999999999999876
Q ss_pred H
Q 046900 435 Q 435 (442)
Q Consensus 435 ~ 435 (442)
+
T Consensus 513 ~ 513 (515)
T 2jis_A 513 Q 513 (515)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=206.28 Aligned_cols=283 Identities=11% Similarity=0.060 Sum_probs=186.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhH----hhhcCcEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDL----RWRTGIKIVP 171 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~~G~~v~~ 171 (442)
-..++++.+|++++ .+++++++|+++++.+++.+++++||+|+++.|.|.+....+ + ..|+++..
T Consensus 83 ~~~~le~~lA~l~g----------~~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~-~~G~~v~~ 151 (415)
T 2fq6_A 83 THFSLQQAMCELEG----------GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILS-KLGVTTSW 151 (415)
T ss_dssp HHHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGG-GGTCEEEE
T ss_pred hHHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHH-HcCcEEEE
Confidence 35678888888865 346778889999999999999999999999999998876543 3 37999998
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHh--cCcEEEEeccCCcCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATR--KNIHLVSDEIYSGSAFSS 249 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~--~~~~vi~De~y~~~~~~~ 249 (442)
++.+ |+++|++++++ ++++|++++|+||||.+.+ +++|+++|++ +|+++|+|++|+...+ .
T Consensus 152 v~~~-------d~~~le~ai~~------~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~-~ 214 (415)
T 2fq6_A 152 FDPL-------IGADIVKHLQP------NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVL-F 214 (415)
T ss_dssp ECTT-------CGGGGGGGCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTS-S
T ss_pred ECCC-------CHHHHHHhhcc------CCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCccccc-C
Confidence 8753 67889888764 7899999999999999998 7888899999 9999999999986432 1
Q ss_pred CCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce-eEEEeecCHHHHHHHHHccc-cC-CCcHHHHHHHHHHhcCch
Q 046900 250 SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR-VGTIYSYNDKVVTTARRMSS-FT-LISSQTQYLLASMLSNKK 326 (442)
Q Consensus 250 ~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R-iG~i~~~~~~~~~~~~~~~~-~~-~~s~~~q~~~~~~l~~~~ 326 (442)
. ++ .+ +..+++.|+||.+|.+|.+ +||++++++ +.+.++.... .+ ..++....++...++
T Consensus 215 ~---p~-~~---------g~Div~~S~sK~lg~~g~~~~G~l~~~~~-~~~~l~~~~~~~G~~~~~~~a~~~~~~l~--- 277 (415)
T 2fq6_A 215 K---AL-DF---------GIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLRENAYLMGQMVDADTAYITSRGLR--- 277 (415)
T ss_dssp C---GG-GG---------TCSEEEEETTTTTTCSSSCCCEEEEECTT-THHHHHHHHHHTTCCCCHHHHHHHHHHHH---
T ss_pred C---cc-cc---------CCeEEEEeCccccCCCCCceEEEEEeCHH-HHHHHHHHHHhcCCCCCHHHHHHHHhhhh---
Confidence 1 11 11 3458899999999978765 599998554 4444443222 22 234443333333222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-eecC----------------CceEEEEEecCCcccccChhhHHHHHHH
Q 046900 327 FTENYIKTNRERLQKRYQMIIEGLRSA-GIE-CLKG----------------NAGLFCWMNLSPLLEEQTREGELALWDS 388 (442)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (442)
.+....+...++...+.+.|++. .+. +..| ..+..+++.++... ...+...+...
T Consensus 278 ----~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~---~~~~~~~~l~~ 350 (415)
T 2fq6_A 278 ----TLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL---NNEELANYLDN 350 (415)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC---CHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCC---CHHHHHHHHHh
Confidence 23344455566777777888765 222 1111 13447788876420 01124444444
Q ss_pred HHHcCcEEEeCCCCCC-------------------CCCCCEEEEEeecC-CHHHHHHHHHHHH
Q 046900 389 MLHEVKLNISPGSSCH-------------------CSEPGWFRVCFANM-SEQTLEVALKRIH 431 (442)
Q Consensus 389 l~~~~gi~v~pg~~f~-------------------~~~~~~iRls~~~~-~~e~i~~~l~~l~ 431 (442)
+ +..++.+..|+.+. +..++.||||++.. ++++++.+.+.|+
T Consensus 351 l-~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~ 412 (415)
T 2fq6_A 351 F-SLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFA 412 (415)
T ss_dssp C-SSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHH
T ss_pred C-CcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHH
Confidence 3 33356666553311 11247899999852 3444555555444
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-23 Score=206.65 Aligned_cols=323 Identities=12% Similarity=0.090 Sum_probs=227.5
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCcc------CCCcEEEecChHHHHHHHHHhhcC-------------------C
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKF------DLNRIVVTAGATAANELLTFILAD-------------------P 143 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~------~~~~i~~t~G~~~ai~~~~~~l~~-------------------~ 143 (442)
..|....+..++++++++|+.+.+|.+... .....++|+|+++++..++.+..+ +
T Consensus 108 ~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~ 187 (481)
T 4e1o_A 108 FTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNA 187 (481)
T ss_dssp SSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHT
T ss_pred CCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccC
Confidence 457667788999999999999998742111 013689999999999888766532 5
Q ss_pred CCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHH
Q 046900 144 GDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLE 223 (442)
Q Consensus 144 gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~ 223 (442)
++.|+++.++|..+...+.. .|++++.+|+++ ++.+|+++|+++|++...++..+.+|+++.++|+||.+-+ ++
T Consensus 188 ~~~v~~s~~~H~s~~~~~~~-~g~~~~~v~~~~--~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~---l~ 261 (481)
T 4e1o_A 188 RLVAYASDQAHSSVEKAGLI-SLVKMKFLPVDD--NFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC---LS 261 (481)
T ss_dssp TEEEEEETTSCHHHHHHHHH-HTCEEEEECCCT--TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HH
T ss_pred CeEEEEcCcchHHHHHHHHh-CCCceEEEEcCC--CCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC---HH
Confidence 67999999999999999885 899999999864 5789999999999876555555788889999999998866 88
Q ss_pred HHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHH-HHH
Q 046900 224 ELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVT-TAR 302 (442)
Q Consensus 224 ~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~-~~~ 302 (442)
+|+++|++||+++++|++|+...+....+.....-.. .-..+..+++|.++.| ..+|++++.++.... .+.
T Consensus 262 ~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~-------~aDsi~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~ 333 (481)
T 4e1o_A 262 ELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE-------YADSFTFNPSKWMMVH-FDCTGFWVKDKYKLQQTFS 333 (481)
T ss_dssp HHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGG-------GCSEEEECHHHHSSCC-SSCEEEEESBHHHHHTTTC
T ss_pred HHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcc-------cCCEEEEChHHhcCCC-CceEEEEEeCHHHHHHHhc
Confidence 8999999999999999999875432222221110000 1124567999998755 567888776655432 211
Q ss_pred Hcccc------------------CC--CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC
Q 046900 303 RMSSF------------------TL--ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGN 361 (442)
Q Consensus 303 ~~~~~------------------~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 361 (442)
....+ .+ ...+.+.++...+. .+.++++.++..++++++.+.|++. |+++..+.
T Consensus 334 ~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~ 408 (481)
T 4e1o_A 334 VNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG-----VKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR 408 (481)
T ss_dssp CCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCC
T ss_pred CCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Confidence 10000 00 12344555444443 2346677788889999999999987 88887655
Q ss_pred ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeec--CCHHHHHHHHHHHHHHHHHHH
Q 046900 362 AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFAN--MSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 362 ~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~e~i~~~l~~l~~~l~~~~ 438 (442)
...++++.++... ....++.+.|.++..+.+.|+.. .+..++|+++.. .+++++++++++|+++.++..
T Consensus 409 ~~~~v~f~~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~---~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 409 HLGLVVFRLKGPN-----SLTENVLKEIAKAGRLFLIPATI---QDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp CSSEEEEEESSCH-----HHHHHHHHHHHHHCSSBCEEEEE---TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEeCCch-----HHHHHHHHHHHhCCeEEEEeeEE---CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 5557777775421 13568888888883355555433 234689999763 268999999999999987754
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-23 Score=206.18 Aligned_cols=322 Identities=12% Similarity=0.105 Sum_probs=222.9
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCcc-----CCCcEEEecChHHHHHHHHHhhcC-------------------CCC
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKF-----DLNRIVVTAGATAANELLTFILAD-------------------PGD 145 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-----~~~~i~~t~G~~~ai~~~~~~l~~-------------------~gd 145 (442)
.|....+..++++++++|+.+.+|.+... .....++|+|+|+++..++.+..+ +++
T Consensus 104 ~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~ 183 (475)
T 3k40_A 104 TWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKL 183 (475)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHE
T ss_pred CccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCe
Confidence 46666788999999999999988732110 113689999999998887766521 346
Q ss_pred eEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHH
Q 046900 146 ALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEEL 225 (442)
Q Consensus 146 ~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l 225 (442)
.|+++.++|..+...+.. .|++++.+|+++ ++ +|+++|+++|++....+..+.+|+++.++|+||.+-+ +++|
T Consensus 184 ~vi~s~~~H~s~~~~~~~-~g~~~~~v~~d~--~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~---l~~I 256 (475)
T 3k40_A 184 VGYCSDQAHSSVERAGLL-GGVKLRSVQSEN--HR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY---LDEC 256 (475)
T ss_dssp EEEEETTSCHHHHHHHHH-HTCEEEEECCBT--TB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHH
T ss_pred EEEECCCchHHHHHHHHH-cCCceEEEECCC--CC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC---HHHH
Confidence 899999999999999885 899999999875 45 9999999999876555555778899999999999866 8889
Q ss_pred HHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHH-HHHHHHc
Q 046900 226 LDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKV-VTTARRM 304 (442)
Q Consensus 226 ~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~-~~~~~~~ 304 (442)
+++|++||+++++|++|+...+....+.....-.. ....+..+++|.++ ....+|++++.++.. .+.+...
T Consensus 257 ~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~-------~~Ds~~~~~hK~l~-~p~g~g~l~~~~~~~l~~~~~~~ 328 (475)
T 3k40_A 257 GPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIE-------SADSFNFNPHKWML-VNFDCSAMWLKDPSWVVNAFNVD 328 (475)
T ss_dssp HHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGG-------GCSEEEECHHHHSS-CCSSCEEEEESSGGGC-------
T ss_pred HHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcc-------cCCEEEECchhccC-CCCceEEEEEeCHHHHHHHhcCC
Confidence 99999999999999999864332221211110000 11245689999886 445688888765543 2222111
Q ss_pred cccC----------------CC----cHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCce
Q 046900 305 SSFT----------------LI----SSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAG 363 (442)
Q Consensus 305 ~~~~----------------~~----s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g 363 (442)
..+. .. ..+.+.++...+. .+.++++.++..++.+++.+.|++. |+++..+...
T Consensus 329 ~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~ 403 (475)
T 3k40_A 329 PLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG-----VENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINM 403 (475)
T ss_dssp --------------------CCCGGGTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBT
T ss_pred ccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCce
Confidence 0000 00 1233344444332 2345677788888999999999987 8888765544
Q ss_pred EEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeec--CCHHHHHHHHHHHHHHHHHHHh
Q 046900 364 LFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFAN--MSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
.++++.++... ....++.+.|.++.++.+.|+..+ +..++|+++.+ .+++++++++++|+++.++..+
T Consensus 404 ~iv~f~~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~~---g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 404 GLVCFRLKGSN-----ERNEALLKRINGRGHIHLVPAKIK---DVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ 473 (475)
T ss_dssp TEEEEEESSCH-----HHHHHHHHHHHHHTSCBCEEEEET---TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCCch-----HHHHHHHHHHHhCCcEEEEeeEEC---CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 56667765421 135788889988844555554432 35789999873 2789999999999999887654
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-22 Score=196.39 Aligned_cols=291 Identities=18% Similarity=0.208 Sum_probs=195.4
Q ss_pred chHHHHHHH-HHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEe
Q 046900 96 GLKSFRQAM-ASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIH 173 (442)
Q Consensus 96 g~~~lr~~i-a~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~ 173 (442)
...+|++++ |++++ ..+++++++|+++++.+++.++ +++||+|+++.|+|..+...+.. .|++++.++
T Consensus 37 ~~~~l~~~~~a~~~g---------~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~~-~G~~~~~v~ 106 (377)
T 3ju7_A 37 INQRFEQTIMSGFFQ---------NRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAAIW-CGLEPYFID 106 (377)
T ss_dssp HHHHHHHHHHHHTST---------TCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHHH-TTCEEEEEC
T ss_pred HHHHHHHHHHHHHhC---------CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHH-cCCEEEEEe
Confidence 468999999 99864 1567899999999999999998 89999999999999999998885 999999999
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCc--eeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCC-CCC
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMR--VRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAF-SSS 250 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~--~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~-~~~ 250 (442)
+++ ++|.+|++++++++... + +|+|+ |+||+|.+.+ +++|.++|+ +|++||+|++|+.... .+.
T Consensus 107 ~~~-~~~~~d~~~l~~~i~~~-----~~~tk~v~---~~~~~G~~~~---~~~i~~la~-~~~~vi~D~a~a~g~~~~~~ 173 (377)
T 3ju7_A 107 ISI-DDWYMDKTVLWDKIEEL-----KEEVAIVV---PYATFGSWMN---LEEYEELEK-KGVPVVVDAAPGFGLMNGGM 173 (377)
T ss_dssp BCT-TTCSBCHHHHHHHHHHH-----GGGEEEEC---CBCGGGBCCC---CHHHHHHHH-TTCCBEEECTTCTTCEETTE
T ss_pred cCC-ccCCcCHHHHHHHHhcC-----CCCceEEE---EECCCCCccC---HHHHHHHHh-cCCEEEEECCCccCCeECCE
Confidence 875 46889999999998321 4 88776 7789999988 667788888 9999999999984321 111
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEec--CcccCCCCCceeEEEeecCHHHHHHHHHcccc--------------CCCcHHH
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYS--LSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--------------TLISSQT 314 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S--~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--------------~~~s~~~ 314 (442)
.+ ... ..+ +.+.| .+|.++ +| +.|+++++++.+.+.++..... ..++.+.
T Consensus 174 ---~~---g~~----~~d--~~~~S~~~~K~l~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~ 239 (377)
T 3ju7_A 174 ---HY---GQD----FSG--MIIYSFHATKPFG-IG-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYA 239 (377)
T ss_dssp ---ET---TTT----CSS--EEEEECBTTSSSC-CB-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHH
T ss_pred ---ec---cCC----CCc--EEEEECCCCCcCC-CC-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHH
Confidence 10 000 012 34455 469997 45 7899998888887777654432 2244454
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC---CeeecCCc--e--EEEEEecCCcccccChhhHHHHHH
Q 046900 315 QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAG---IECLKGNA--G--LFCWMNLSPLLEEQTREGELALWD 387 (442)
Q Consensus 315 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---~~~~~~~~--g--~~~~~~~~~~~~~~~~~~~~~l~~ 387 (442)
++++...++. +....++.+++++++.+.|++.+ +.+.+..+ . .|+.+.++... +..++.+
T Consensus 240 aa~~~~~l~~-------l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~ 306 (377)
T 3ju7_A 240 AAIGIATMKK-------WDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEV------RNKQVIE 306 (377)
T ss_dssp HHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTS------CHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChh------hHHHHHH
Confidence 4444444432 23334444555666667776653 22322211 1 12334444321 2567788
Q ss_pred HHHHcCcEEEeCCCC--CCC-----C---C---------CCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 388 SMLHEVKLNISPGSS--CHC-----S---E---------PGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 388 ~l~~~~gi~v~pg~~--f~~-----~---~---------~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.|.++ ||.++.+.. +.. . . ...+||.+. .++++++++.++.|++++.+.
T Consensus 307 ~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~~ 375 (377)
T 3ju7_A 307 DLKKQ-KIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVSA 375 (377)
T ss_dssp HHHTT-TBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC-----
T ss_pred HHHHC-CCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 87665 999887641 110 0 0 135899886 558999999999999887764
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-22 Score=200.59 Aligned_cols=302 Identities=13% Similarity=0.078 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCc---EEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH--------hHhhhcC
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNR---IVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR--------DLRWRTG 166 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~---i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~~G 166 (442)
..|++...+++.+.+| ++.++ .++++++++++..++.++++|||+|+++++.|.++.. .+.. .|
T Consensus 99 ~~lE~~a~~~~a~l~g----~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~-~g 173 (490)
T 2a7v_A 99 DEIELLCQRRALEAFD----LDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISA-TS 173 (490)
T ss_dssp THHHHHHHHHHHHHTT----CCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------
T ss_pred HHHHHHHHHHHHHHcC----CCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHH-cC
Confidence 4666555566666655 44442 3445577999999999999999999999999865421 1222 45
Q ss_pred c--EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCC-
Q 046900 167 I--KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYS- 243 (442)
Q Consensus 167 ~--~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~- 243 (442)
. ++++++++++ ++.+|+++|++.+++. ++|+|+++.|+||+ ..+ +++|.++|++||+++++|++|.
T Consensus 174 ~~~~~~~~~vd~~-~~~iD~d~le~~l~~~-----~~klIi~~~s~~~~--~~d---l~~i~~ia~~~g~~livD~Ah~~ 242 (490)
T 2a7v_A 174 IFFESMPYKLNPK-TGLIDYNQLALTARLF-----RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHIS 242 (490)
T ss_dssp -------CCBCTT-TCSBCHHHHHHHHHHH-----CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGH
T ss_pred CeEEEEecccccc-cCCcCHHHHHHHHhhc-----CCcEEEEcCCCCCC--ccc---HHHHHHHHHHcCCEEEEcccccc
Confidence 4 3445555533 4689999999999753 67888888899986 334 8889999999999999999975
Q ss_pred cCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCH--------------HHHHHHHHcccc--
Q 046900 244 GSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYND--------------KVVTTARRMSSF-- 307 (442)
Q Consensus 244 ~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~--------------~~~~~~~~~~~~-- 307 (442)
.+++.+..+.++ . ...+++.|+||++ .|.|.|+++++++ .+.+.+++...+
T Consensus 243 glv~~g~~~~~~-~----------~aDiv~~S~hK~l--~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~ 309 (490)
T 2a7v_A 243 GLVAAKVIPSPF-K----------HADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSL 309 (490)
T ss_dssp HHHHTTSSCCGG-G----------TCSEEEEESSGGG--CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTT
T ss_pred ccccCCcCCCCC-C----------CCCEEEECCcccC--ccccchheeeccchhcccccccchhhHHHHHHHHHHhcccC
Confidence 333333222222 1 1126789999988 4678899998654 244555543222
Q ss_pred -CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC-CceEEEEEecCCcccccChhhHHHH
Q 046900 308 -TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKG-NAGLFCWMNLSPLLEEQTREGELAL 385 (442)
Q Consensus 308 -~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l 385 (442)
++.+.....+++.++.. ......++..+++.++++++.+.|.+.|+++..+ ...+++|++++.... +..++
T Consensus 310 qggp~~~~iaAla~Al~~--~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~t~t~lv~vdl~~~g~-----~~~~~ 382 (490)
T 2a7v_A 310 QGGPHNHAIAAVAVALKQ--ACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGL-----DGARA 382 (490)
T ss_dssp CCSCCHHHHHHHHHHHHH--HHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTC-----CHHHH
T ss_pred CCCchHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCCCCCeEEEEEeCCCCC-----CHHHH
Confidence 22233333333333331 1112236677888899999999999999988652 345688999865211 13455
Q ss_pred HHHHHHcCcEEEeCCCCCCC---CCCCEEEEEeec-----CCHHHHHHHHHHHHHHHHH
Q 046900 386 WDSMLHEVKLNISPGSSCHC---SEPGWFRVCFAN-----MSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 386 ~~~l~~~~gi~v~pg~~f~~---~~~~~iRls~~~-----~~~e~i~~~l~~l~~~l~~ 436 (442)
.+.| ++.||.+..+..++. ..++.|||+... .++++++++++.|.+++..
T Consensus 383 ~~~L-~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 383 ERVL-ELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp HHHH-HHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 5555 566999986544432 224679997742 4789999999999988864
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=205.84 Aligned_cols=291 Identities=15% Similarity=0.128 Sum_probs=188.3
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHh-hcCCCCeEEEcCCCCcChHHhHhh---hcCcEE
Q 046900 94 YHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFI-LADPGDALLVPTPYYPGFDRDLRW---RTGIKI 169 (442)
Q Consensus 94 ~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~-l~~~gd~Vl~~~p~y~~~~~~~~~---~~G~~v 169 (442)
.+|..++.+.+.+.+.+.+| +++++|++++|++.++..+..+ ..++||+|+++.|+|+.+...++. ..|+++
T Consensus 103 ~~g~~~~~~~~~~~la~~~g----~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v 178 (438)
T 1wyu_A 103 SQGVLQATFEYQTMIAELAG----LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKL 178 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHT----SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEE
T ss_pred hhhHHHHHHHHHHHHHHHhC----CCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEE
Confidence 34656666666666666555 5677899999999443333322 247899999999999998765531 279999
Q ss_pred EEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEecc-CCcCCCC
Q 046900 170 VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEI-YSGSAFS 248 (442)
Q Consensus 170 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~-y~~~~~~ 248 (442)
+.++.+ ++.+|+++ +. .++++|++++| ||||.+.+ +++|+++|+++|+++++|-. .+ ++
T Consensus 179 ~~v~~~---~~~~d~~~----i~------~~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a---~g 238 (438)
T 1wyu_A 179 LTLPLE---GGRTPLPE----VG------EEVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLS---LG 238 (438)
T ss_dssp EEECCB---TTBCCCCC----CC------TTEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTG---GG
T ss_pred EEEcCc---CCccCHHH----hC------CCeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhh---cc
Confidence 999872 24677665 32 27899999999 99999987 88888999999999996622 21 11
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEecCcccCC----CCCceeEEEeecCHHHHHHHH----------------------
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVYSLSKDLG----LPGFRVGTIYSYNDKVVTTAR---------------------- 302 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g----~~G~RiG~i~~~~~~~~~~~~---------------------- 302 (442)
. +.....+ +..+++.| +|.|| +.|.|+||+++++ .+.+.+.
T Consensus 239 ~--~~~~~~~---------g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~l~~ 305 (438)
T 1wyu_A 239 V--LKPPGAY---------GADIAVGD-GQSLGLPMGFGGPHFGFLATKK-AFVRQLPGRLVSETVDVEGRRGFILTLQA 305 (438)
T ss_dssp T--BCCHHHH---------TCSEEEEE-CTTTTCCCGGGCSCCEEEEECG-GGGGGCCSCCEEEEEBTTSCEEEEECCGG
T ss_pred C--cCCCccC---------CCCEEEEC-CcccCCCccCCCCCeeEEEEcH-HHHHhCCCceeccccccCCCcceeeeccc
Confidence 1 1111222 11245556 66554 4567999999954 4333221
Q ss_pred ------HccccCCC---cHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEEEEecCC
Q 046900 303 ------RMSSFTLI---SSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSP 372 (442)
Q Consensus 303 ------~~~~~~~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~ 372 (442)
........ +.+....++.++.. ...+.+++..+++.++++++.+.|++. |+++..+. .+|.++.+..
T Consensus 306 ~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~--~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~ 382 (438)
T 1wyu_A 306 REQYIRRAKAKSNITTNAQLTALMGAMYLAA--LGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK-PFFNEFALAL 382 (438)
T ss_dssp GSHHHHGGGSSCCCCSCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS-SBCSEEEEEC
T ss_pred cccccchhcccCCccchHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC-CeEEEEEEeC
Confidence 00111111 11212111111221 112346778888999999999999988 88887653 3333222221
Q ss_pred cccccChhhHHHHHHHHHHcCcEEE--eCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHH
Q 046900 373 LLEEQTREGELALWDSMLHEVKLNI--SPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 373 ~~~~~~~~~~~~l~~~l~~~~gi~v--~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l 434 (442)
.. +..++++.|.++ ||.+ .+|..|. ++++|||+. ..+++++++++++|++++
T Consensus 383 ~~------~~~~~~~~L~~~-gi~v~~~~~~~~~---~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 383 PK------DPEAVRRALAER-GFHGATPVPREYG---ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp SS------CHHHHHHHHHHT-TCCCCEECCTTSC---SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred CC------CHHHHHHHHHHC-CceeccccccccC---CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 11 267888998876 9998 7777664 579999998 227999999999998764
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-22 Score=195.54 Aligned_cols=288 Identities=13% Similarity=0.124 Sum_probs=193.6
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-------cCCCCeEEEcCCCCcChHHhHhh
Q 046900 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-------ADPGDALLVPTPYYPGFDRDLRW 163 (442)
Q Consensus 91 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-------~~~gd~Vl~~~p~y~~~~~~~~~ 163 (442)
|.+..+..++|+++|++++ . +++++++++++++..++.++ +++||.|+++.|+|..+...+..
T Consensus 30 ~~~~~~~~~l~~~la~~~~--------~--~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~ 99 (390)
T 3b8x_A 30 FTMGEYVKQYETQFAKTFG--------S--KYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQ 99 (390)
T ss_dssp CSSCHHHHHHHHHHHHHHT--------C--SEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHC--------C--CcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHHH
Confidence 4455678999999999986 2 25677777778999999998 78999999999999999998884
Q ss_pred hcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCC
Q 046900 164 RTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYS 243 (442)
Q Consensus 164 ~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~ 243 (442)
.|++++.++++++ ++.+|++.|++.+++ ++++|+++| ++|...+ +++|.++|+++|+++|+|++|+
T Consensus 100 -~g~~~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~~~~---~~g~~~~---~~~i~~l~~~~~~~li~D~a~~ 165 (390)
T 3b8x_A 100 -YGLRVKFVDIDIN-TLNIDIESLKEAVTD------STKAILTVN---LLGNPNN---FDEINKIIGGRDIILLEDNCES 165 (390)
T ss_dssp -TTCEEEEECBCTT-TCSBCHHHHHHHCCT------TEEEEEEEC---GGGCCCC---HHHHHHHHTTSCCEEEEECTTC
T ss_pred -cCCEEEEEecCcc-ccCcCHHHHHHHhCc------CCeEEEEEC---CccChhh---HHHHHHHHHHcCCEEEEECcCc
Confidence 8999999998764 478999999998864 788988885 4555444 8888999999999999999998
Q ss_pred cCCCCCCCcccHHHHHhhhcCCCCCcEEEEecC----cccCCCCCceeEEEeecCHHHHHHHHHccccC-----------
Q 046900 244 GSAFSSSEFVSIAEILEARQYKDSERVHIVYSL----SKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT----------- 308 (442)
Q Consensus 244 ~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~----SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~----------- 308 (442)
....... . . .+....+.++ +|.++ +| +.|+++++++.+.+.++.....+
T Consensus 166 ~g~~~~~--~-------~-----~g~~~~~~~~s~~~~k~~~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~ 229 (390)
T 3b8x_A 166 MGATFNN--K-------C-----AGTFGLMGTFSSFYSNHIA-TM-EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKV 229 (390)
T ss_dssp TTCEETT--E-------E-----TTSSSSEEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETT
T ss_pred ccCEECC--c-------c-----cccccceEEEEccCCCCCc-cC-CceEEEeCCHHHHHHHHHHHhcCCCccccccccc
Confidence 4321110 0 0 0111122333 45553 33 45999986656655443321100
Q ss_pred ------------------C----CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC--Cce
Q 046900 309 ------------------L----ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKG--NAG 363 (442)
Q Consensus 309 ------------------~----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~--~~g 363 (442)
+ ++.+...++...+ +++++..++.++.++++.+.|++. |+++..+ .++
T Consensus 230 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-------~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 302 (390)
T 3b8x_A 230 TGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL-------KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESS 302 (390)
T ss_dssp TEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCC
T ss_pred cccccccccccccceeccccccCcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcc
Confidence 1 3344444333333 234566777788889999999876 7766543 233
Q ss_pred E-EEEEecCCcccccChhhHHHHHHHHHHcCcEEEeC---CCCCCC-C--C-----------------CCEEEEEee-cC
Q 046900 364 L-FCWMNLSPLLEEQTREGELALWDSMLHEVKLNISP---GSSCHC-S--E-----------------PGWFRVCFA-NM 418 (442)
Q Consensus 364 ~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~p---g~~f~~-~--~-----------------~~~iRls~~-~~ 418 (442)
+ .+++.++.... .+..++.+.|.++ ||.+.+ |+.+.. . . .+.+||++. .+
T Consensus 303 ~~~~~i~~~~~~~----~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 377 (390)
T 3b8x_A 303 WFGFSFIIKKDSG----VIRKQLVENLNSA-GIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIE 377 (390)
T ss_dssp CCEEEEEECTTSC----CCHHHHHHHHHHT-TBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSC
T ss_pred cEEEEEEecCcCc----ccHHHHHHHHHHC-CCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCC
Confidence 3 35566652100 0256788888665 999986 332111 0 0 035999986 45
Q ss_pred CHHHHHHHHHHH
Q 046900 419 SEQTLEVALKRI 430 (442)
Q Consensus 419 ~~e~i~~~l~~l 430 (442)
++++++++++.|
T Consensus 378 t~~di~~i~~~l 389 (390)
T 3b8x_A 378 LFDEIDYLREVL 389 (390)
T ss_dssp CHHHHHHHHHHT
T ss_pred CHHHHHHHHHhh
Confidence 899999988876
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=198.01 Aligned_cols=254 Identities=15% Similarity=0.094 Sum_probs=181.2
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE---ecChHHHHHHHHHhhcCCCCeEEEcC-CCCcChHH-----
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV---TAGATAANELLTFILADPGDALLVPT-PYYPGFDR----- 159 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~---t~G~~~ai~~~~~~l~~~gd~Vl~~~-p~y~~~~~----- 159 (442)
..|++. |...|++.+|++++ .+..++ ++|+++++..++.+++++||+|+++. |.|..+..
T Consensus 54 ~~y~~~-~~~~Le~~lA~l~g----------~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~ 122 (409)
T 3jzl_A 54 YGYDDE-GRDTLERVYATVFK----------TEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIR 122 (409)
T ss_dssp TCTTCH-HHHHHHHHHHHHHT----------CSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSS
T ss_pred CCCChh-HHHHHHHHHHHHhC----------CCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcc
Confidence 346554 67888888888875 344555 88999999999999999999999998 99999874
Q ss_pred -----hHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeC----CCCCCCcCCCHHHHHHHHHHHH
Q 046900 160 -----DLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITN----PSNPLGATIQRSVLEELLDFAT 230 (442)
Q Consensus 160 -----~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~----P~NPtG~~~~~~~l~~l~~~~~ 230 (442)
.++ ..|++++.+++++ ++.+|++++++++++ ++++|++++ |+||||.+ .++++|+++|+
T Consensus 123 g~~~~~l~-~~G~~~~~v~~~~--~g~~d~e~l~~ai~~------~tklV~i~~s~g~p~nptg~v---~~l~~I~~la~ 190 (409)
T 3jzl_A 123 KQGQGSLK-DFHIGYSSVPLLE--NGDVDFPRIAKKMTP------KTKMIGIQRSRGYADRPSFTI---EKIKEMIVFVK 190 (409)
T ss_dssp SSSSSCTG-GGTCEEEECCCCT--TSCCCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCH---HHHHHHHHHHH
T ss_pred cchhhHHH-HcCCEEEEeCCCC--CCCcCHHHHHHhccC------CCeEEEEECCCCCCCCCcCcc---ccHHHHHHHHH
Confidence 345 3799999999875 457899999998864 789999999 99999977 45889999999
Q ss_pred h--cCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcc-c
Q 046900 231 R--KNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMS-S 306 (442)
Q Consensus 231 ~--~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~-~ 306 (442)
+ +++++|+|++|+.+.+...+. . . +..++++|+||.+|.+| .+.||+++ ++.+.+.++... .
T Consensus 191 ~~~~~~~livD~a~~~~~~~~~p~-~---~---------g~Div~~S~sK~lgg~~~~~GG~v~~-~~~li~~l~~~~~~ 256 (409)
T 3jzl_A 191 NINPEVIVFVDNCYGEFVEYQEPP-E---V---------GADIIAGSLIKNPGGGLAKTGGYIAG-KEALVDLCGYRLTT 256 (409)
T ss_dssp HHCTTCEEEEECTTCTTTSSCCSG-G---G---------TCSEEEEETTSGGGTTTCSSCEEEEE-CHHHHHHHHHHHSC
T ss_pred hhCCCCEEEEeCCcccccccCCcc-c---c---------CCeEEEECccccCCccCCceEEEEEe-CHHHHHHHHHHhcc
Confidence 9 999999999999876433221 1 1 33488999999998555 44699998 566666665422 1
Q ss_pred c-C---CCcHHH-HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC----ceEEEEEecCCccccc
Q 046900 307 F-T---LISSQT-QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN----AGLFCWMNLSPLLEEQ 377 (442)
Q Consensus 307 ~-~---~~s~~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~g~~~~~~~~~~~~~~ 377 (442)
. . ..+.+. +.++...+. .+...+++..+++.++.+.|+++|+++.+.. ..+.+.+.+.+
T Consensus 257 ~~~g~~~g~~~~~~~~~l~gl~-------~~~~r~~~~~~~a~~la~~L~~~g~~v~p~~~~~~~~~i~~i~l~~----- 324 (409)
T 3jzl_A 257 PGIGREAGASLYSLLEMYQGFF-------LAPHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVSFHN----- 324 (409)
T ss_dssp TTTGGGCCCCTTCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCCEEECSC-----
T ss_pred ccccccccccHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCccEEEEEEeCC-----
Confidence 1 1 111111 222222221 2345566778889999999999998875432 22244555543
Q ss_pred ChhhHHHHHHHHHHc
Q 046900 378 TREGELALWDSMLHE 392 (442)
Q Consensus 378 ~~~~~~~l~~~l~~~ 392 (442)
.+...++++.|...
T Consensus 325 -~~~~~~~~~~L~~~ 338 (409)
T 3jzl_A 325 -KEKMVAFAQAIQAA 338 (409)
T ss_dssp -HHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhc
Confidence 23467788877554
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=199.26 Aligned_cols=281 Identities=16% Similarity=0.170 Sum_probs=185.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhH----hhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDL----RWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~~G~~v~~v 172 (442)
..++++++|++++ .+ +.|+ ++++++++..++.+++++||+|+++.|+|..+...+ . ..|++++.+
T Consensus 60 ~~~l~~~la~~~g--------~~-~~v~-~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-~~g~~~~~~ 128 (421)
T 2ctz_A 60 VDVLEKRLAALEG--------GK-AALA-TASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLK-RLGIEVRFT 128 (421)
T ss_dssp HHHHHHHHHHHHT--------CS-EEEE-ESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHH-HTTCEEEEC
T ss_pred HHHHHHHHHHHhC--------CC-ceEE-ecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHH-HcCCEEEEE
Confidence 5788999998875 12 3354 455599999999999999999999999999877665 5 489999888
Q ss_pred -ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccC-CcCCCCCC
Q 046900 173 -HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIY-SGSAFSSS 250 (442)
Q Consensus 173 -~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y-~~~~~~~~ 250 (442)
+.+ |++++++.+++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++| +.. +.+.
T Consensus 129 ~~~~-------d~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g-~~~~ 191 (421)
T 2ctz_A 129 SREE-------RPEEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGG-YLLR 191 (421)
T ss_dssp CTTC-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGG-TSCC
T ss_pred CCCC-------CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccc-ccCC
Confidence 643 78999988864 8899999999999999999 888999999999999999999 532 2222
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecC--HHH----HHHHHH---------------------
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYN--DKV----VTTARR--------------------- 303 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~--~~~----~~~~~~--------------------- 303 (442)
+. .. +..+++.|+||.++.+|.|+|++++.+ ..+ ...+..
T Consensus 192 ~~----~~---------~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~ 258 (421)
T 2ctz_A 192 PL----AW---------GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIV 258 (421)
T ss_dssp GG----GG---------TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHH
T ss_pred cc----cc---------CCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHH
Confidence 11 11 234788999999998999999988742 111 111110
Q ss_pred ------ccccC-CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec-C--------------
Q 046900 304 ------MSSFT-LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK-G-------------- 360 (442)
Q Consensus 304 ------~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~-------------- 360 (442)
...++ ..++...+++...++. +....++..++.+++.+.|.+. ++.... |
T Consensus 259 ~~r~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~ 331 (421)
T 2ctz_A 259 KARVDGLRDQGQALGPFEAWVVLLGMET-------LSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKY 331 (421)
T ss_dssp HHHHTHHHHHCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHcCcch-------HHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHh
Confidence 00111 2334333333333332 2233444456778888888876 665541 1
Q ss_pred ---CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC---------------------CCCCEEEEEee
Q 046900 361 ---NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC---------------------SEPGWFRVCFA 416 (442)
Q Consensus 361 ---~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~---------------------~~~~~iRls~~ 416 (442)
..|..+.+.+... ......+.+.+ +..++.+..|..+.. ..++.+|+|++
T Consensus 332 ~~~~~g~ivsf~l~~~-----~~~~~~~~~~l-~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g 405 (421)
T 2ctz_A 332 FKGKPGAVLTFGLKGG-----YEAAKRFISRL-KLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG 405 (421)
T ss_dssp HTTCCCSEEEEEETTH-----HHHHHHHHHTC-SSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECC
T ss_pred ccCCCceEEEEEeCCC-----HHHHHHHHHhC-CcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeC
Confidence 2233566666541 01233444443 223555555532110 12478999997
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 046900 417 NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 417 ~~~~e~i~~~l~~l~~~l 434 (442)
. +++++.++.|.+++
T Consensus 406 ~---e~~~~li~~l~~al 420 (421)
T 2ctz_A 406 L---EHVEDLKAELKEAL 420 (421)
T ss_dssp S---SCHHHHHHHHHHHT
T ss_pred C---CCHHHHHHHHHHHh
Confidence 5 46888888888765
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=198.80 Aligned_cols=255 Identities=15% Similarity=0.094 Sum_probs=180.5
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE---ecChHHHHHHHHHhhcCCCCeEEEcC-CCCcChHH------
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV---TAGATAANELLTFILADPGDALLVPT-PYYPGFDR------ 159 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~---t~G~~~ai~~~~~~l~~~gd~Vl~~~-p~y~~~~~------ 159 (442)
.|++. |...|++.+|++++ .+..++ ++|+++++..++.+++++||+|++++ |.|..+..
T Consensus 69 ~y~~~-~~~~Le~~lA~l~g----------~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~ 137 (427)
T 3i16_A 69 GYGDI-GRDSLDAVYARVFN----------TESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITE 137 (427)
T ss_dssp CTTCH-HHHHHHHHHHHHHT----------CSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSC
T ss_pred CCCHH-HHHHHHHHHHHHhC----------CcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccc
Confidence 45554 67888888888875 233355 78889999999999999999999999 99988763
Q ss_pred -----hHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeC----CCCCCCcCCCHHHHHHHHHHHH
Q 046900 160 -----DLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITN----PSNPLGATIQRSVLEELLDFAT 230 (442)
Q Consensus 160 -----~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~----P~NPtG~~~~~~~l~~l~~~~~ 230 (442)
.++ ..|++++.++++++ +.+|++++++++++ ..++|+|++++ |+||||.+ .++++|+++|+
T Consensus 138 ~~~~~~l~-~~G~~~~~v~~~~~--g~~D~e~l~~~l~~----~~~tklV~i~~s~~~p~nptg~i---~dl~~i~~la~ 207 (427)
T 3i16_A 138 NSNMGSLK-EFGINYKQVDLKED--GKPNLEEIEKVLKE----DESITLVHIQRSTGYGWRRALLI---EDIKSIVDCVK 207 (427)
T ss_dssp CCSSCCTG-GGTCEEEECCCCTT--SSCCHHHHHHHHHT----CTTEEEEEEECSCCSSSSCCCCH---HHHHHHHHHHH
T ss_pred cchHHHHH-HcCCEEEEecCccC--CCcCHHHHHHHhhC----CCCCEEEEEEcCCCCCCCCcccH---HHHHHHHHHHH
Confidence 344 37999999998754 46899999999972 12789999999 99999876 56999999999
Q ss_pred h--cCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcc-c
Q 046900 231 R--KNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMS-S 306 (442)
Q Consensus 231 ~--~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~-~ 306 (442)
+ +|+++|+|++|+.+.+...+. .. +..++++|+||.+|.+| .+.||+++ ++.+.+.++... .
T Consensus 208 ~~~~g~~livD~a~~~~~~~~~p~----~~---------gaDiv~~S~sK~lgg~g~~~gG~i~~-~~~li~~l~~~~~~ 273 (427)
T 3i16_A 208 NIRKDIICFVDNCYGEFMDTKEPT----DV---------GADLIAGSLIKNIGGGIAPTGGYLAG-TKDCIEKTSYRLTV 273 (427)
T ss_dssp HHCTTSEEEEECTTTTTSSSSCGG----GG---------TCSEEEEETTSGGGTTTCCSCEEEEE-CHHHHHHHHHHHSC
T ss_pred HhCCCCEEEEECCCccccccCCcc----cc---------CCeEEEecCcccCCCCCCceEEEEEE-CHHHHHHHHHhccc
Confidence 9 999999999999876433211 11 33488999999998555 67799998 566666665422 1
Q ss_pred c--CC-CcH-HH-HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc----eEEEEEecCCccccc
Q 046900 307 F--TL-ISS-QT-QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA----GLFCWMNLSPLLEEQ 377 (442)
Q Consensus 307 ~--~~-~s~-~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----g~~~~~~~~~~~~~~ 377 (442)
. +. +++ .. ...+...+ +.+..+.++..+++..+.+.|+++|+++.+..+ .+.+.+.+..
T Consensus 274 ~~~g~~~~~~~~~a~~~l~gl-------~~~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~~i~~i~l~~----- 341 (427)
T 3i16_A 274 PGIGGECGSTFGVVRSMYQGL-------FLAPHISMEALKGAILCSRIMELAGFEVMPKYDEKRSDIIQSIKFND----- 341 (427)
T ss_dssp TTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCEEEECSS-----
T ss_pred CccCccCCccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCccEEEEEEECC-----
Confidence 1 11 111 11 12222221 124556777888889999999999988855322 2255555543
Q ss_pred ChhhHHHHHHHHHHc
Q 046900 378 TREGELALWDSMLHE 392 (442)
Q Consensus 378 ~~~~~~~l~~~l~~~ 392 (442)
.+...++++.|...
T Consensus 342 -~~~~~~f~~~l~~~ 355 (427)
T 3i16_A 342 -KDKLIEFCKGIQTG 355 (427)
T ss_dssp -HHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHhhc
Confidence 22466777777554
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=196.56 Aligned_cols=253 Identities=15% Similarity=0.112 Sum_probs=179.1
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE---ecChHHHHHHHHHhhcCCCCeEEEcC-CCCcChH-------
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV---TAGATAANELLTFILADPGDALLVPT-PYYPGFD------- 158 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~---t~G~~~ai~~~~~~l~~~gd~Vl~~~-p~y~~~~------- 158 (442)
.|+++ |...|++.+|++++ .+..++ ++|+++++..++.++++|||+|++++ |.|..+.
T Consensus 70 ~Y~~~-g~~~Le~~lA~l~g----------~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~ 138 (427)
T 3hvy_A 70 GYNDI-GRDSLDRVYANIFN----------TESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDD 138 (427)
T ss_dssp CTTCH-HHHHHHHHHHHHHT----------CSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCT
T ss_pred CCCch-hHHHHHHHHHHHhC----------CCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhcccc
Confidence 46555 67888888888875 344566 78889999999999999999999999 9998876
Q ss_pred ----HhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeC----CCCCCCcCCCHHHHHHHHHHHH
Q 046900 159 ----RDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITN----PSNPLGATIQRSVLEELLDFAT 230 (442)
Q Consensus 159 ----~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~----P~NPtG~~~~~~~l~~l~~~~~ 230 (442)
..++ ..|++++.+++ + ++.+|++++++++++ ..++|+|++++ |+||||.+ .++++|+++|+
T Consensus 139 ~~~~~~l~-~~G~~~~~v~~-~--~~~~d~e~l~~~i~~----~~~tklV~i~~s~gyp~nptg~v---~dl~~i~~ia~ 207 (427)
T 3hvy_A 139 SKKVGSLR-EYGVKYKMVDL-K--DGKVDINTVKEELKK----DDSIKLIHIQRSTGYGWRKSLRI---AEIAEIIKSIR 207 (427)
T ss_dssp TCCSCCTG-GGTCEEEECCC-B--TTBCCHHHHHHHHHH----CTTEEEEEEESSCCSSSSCCCCH---HHHHHHHHHHH
T ss_pred chhhhHHH-HcCCEEEEecC-C--CCCcCHHHHHHHhhC----CCCCEEEEEECCCCCCCCccccH---HHHHHHHHHHH
Confidence 3345 37999999988 2 457999999999973 12889999999 99999876 56999999999
Q ss_pred h--cCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcc-c
Q 046900 231 R--KNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMS-S 306 (442)
Q Consensus 231 ~--~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~-~ 306 (442)
+ +|+++|+|++|+.+.+...+. .. +..++++|+||.+|.+| .+.||+++ ++.+.+.++... .
T Consensus 208 ~~~~g~~livD~a~~~~~~~~~p~----~~---------gaDiv~~S~sK~lgg~g~~~GG~i~~-~~~li~~l~~~~~~ 273 (427)
T 3hvy_A 208 EVNENVIVFVDNCYGEFVEEKEPT----DV---------GADIIAGSLIKNIGGGIATTGGYIAG-KEEYVTQATFRVTV 273 (427)
T ss_dssp HHCSSSEEEEECTTCTTTSSSCGG----GG---------TCSEEEEETTSGGGTTTCCSCEEEEE-CHHHHHHHHHHHSC
T ss_pred HhCCCCEEEEECCccccccCCCCc----cc---------CCeEEEECCcccccccccceEEEEEE-CHHHHHHHHHHhhc
Confidence 9 899999999999876433221 11 33488999999997444 56699998 566766665532 1
Q ss_pred cCC---CcH-HH-HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc----eEEEEEecCCccccc
Q 046900 307 FTL---ISS-QT-QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA----GLFCWMNLSPLLEEQ 377 (442)
Q Consensus 307 ~~~---~s~-~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----g~~~~~~~~~~~~~~ 377 (442)
... .++ +. ..++...+. .+..+.++..++..++.+.|+++|+++.+..+ .+.+.+.+..
T Consensus 274 ~~~g~~~~~~~~~a~~~~~gl~-------~~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~li~~~~l~~----- 341 (427)
T 3hvy_A 274 PGIGGECGSTFGVMRSLYEGLF-------MAPHVTIEAVKGAVFCARIMELAGFDVLPKYNDKRTDIIQAIKFND----- 341 (427)
T ss_dssp TTTGGGCCCCTTCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSEEEEECSS-----
T ss_pred CCcccccCCCHHHHHHHHHhHh-------HHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCceEEEEEeCCC-----
Confidence 111 111 22 222222221 23456667788889999999999988755322 2255566643
Q ss_pred ChhhHHHHHHHHHH
Q 046900 378 TREGELALWDSMLH 391 (442)
Q Consensus 378 ~~~~~~~l~~~l~~ 391 (442)
.+...++++.|..
T Consensus 342 -~~~~~~f~~~l~~ 354 (427)
T 3hvy_A 342 -EKKLIDFIKGIQT 354 (427)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcc
Confidence 1245677777754
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=202.94 Aligned_cols=347 Identities=13% Similarity=0.146 Sum_probs=213.8
Q ss_pred CCCCCceeeeeccccc--c--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLAENQ--V--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~~n~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+|||..+... + .++.+.+.+.+....... .....|+. ....++++++++.+.+..+ ..
T Consensus 59 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-------~~~~~~~~-~~~~~l~~~la~~l~~~~~----~~ 126 (472)
T 1ohv_A 59 DVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTF-------INRPALGI-LPPENFVEKLRESLLSVAP----KG 126 (472)
T ss_dssp BTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHH-------HCCCCTTT-SCBTTHHHHHHHTGGGGCC----TT
T ss_pred eCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccc-------cccccccc-ccHHHHHHHHHHHHHHhCC----CC
Confidence 3455678999776432 3 345566655543211000 00012332 2347899999997775432 35
Q ss_pred CCcEEEecChHHHHHHHHHhhc--------C-----------------CC---CeEEEcCCCCcChHHhHhhhcCcE---
Q 046900 120 LNRIVVTAGATAANELLTFILA--------D-----------------PG---DALLVPTPYYPGFDRDLRWRTGIK--- 168 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~--------~-----------------~g---d~Vl~~~p~y~~~~~~~~~~~G~~--- 168 (442)
.++|++++|+++|+..+++++. . +| +.|++.+++|.++...+....|..
T Consensus 127 ~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~ 206 (472)
T 1ohv_A 127 MSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIH 206 (472)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHH
T ss_pred cCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCcccc
Confidence 7899999999999999998773 1 45 899999999988765443123321
Q ss_pred ----------EEEEecCC---CCC--C-----cCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCc-CCCHHHHHHHHH
Q 046900 169 ----------IVPIHCDS---SNN--F-----QITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA-TIQRSVLEELLD 227 (442)
Q Consensus 169 ----------v~~v~~~~---~~~--~-----~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~-~~~~~~l~~l~~ 227 (442)
.+++|... ... + ..|++.|++.++++...+.++++|++...+|+||. +.+.+.+++|.+
T Consensus 207 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~ 286 (472)
T 1ohv_A 207 KIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRD 286 (472)
T ss_dssp HTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHH
T ss_pred ccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHH
Confidence 11222100 000 0 12678899888764322225776666555788996 567889999999
Q ss_pred HHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc--
Q 046900 228 FATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS-- 305 (442)
Q Consensus 228 ~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~-- 305 (442)
+|++||+++|+||+|..+.+.+. +..+..+. . ...+-+.||||++ +.| ||++ ++.+.. +....
T Consensus 287 l~~~~g~lli~DEv~~g~g~~g~-~~~~~~~g------v-~~~~Di~t~sK~~-l~G---G~~~--~~~~~~-~~~~~~~ 351 (472)
T 1ohv_A 287 ISRKHGCAFLVDEVQTGGGSTGK-FWAHEHWG------L-DDPADVMTFSKKM-MTG---GFFH--KEEFRP-NAPYRIF 351 (472)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSS-SSGGGGGC------C-SSCCSEEEECGGG-SSE---EEEE--CGGGSC-SSSSSSC
T ss_pred HHHHhCCEEEEeCcccCCCCCCC-chhccccC------C-CCCCCEEEEcccc-ccC---CccC--chhhcc-ccccccc
Confidence 99999999999999987655443 11221110 0 0002245899995 345 7776 333321 11111
Q ss_pred ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC--C----CeeecCCceEEEEEecCCcccccCh
Q 046900 306 SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA--G----IECLKGNAGLFCWMNLSPLLEEQTR 379 (442)
Q Consensus 306 ~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g----~~~~~~~~g~~~~~~~~~~~~~~~~ 379 (442)
..+..+++++.++.+.|+.. .+ ....++++++++++.+.|++. + +....+.+ ++++++++..
T Consensus 352 ~T~~~~~~~~aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g-~~~~~~~~~~------ 419 (472)
T 1ohv_A 352 NTWLGDPSKNLLLAEVINII---KR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRG-TFCSFDTPDE------ 419 (472)
T ss_dssp CSSSSCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEET-TEEEEECSSH------
T ss_pred CccCccHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCc-eEEEEEeCCh------
Confidence 22345788888877776521 11 123455666666666666543 1 33344554 4667777541
Q ss_pred hhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 380 EGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 380 ~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
....+++..|+++ ||.+.|+. .+++|++++ ..+++++++++++|.+++++
T Consensus 420 ~~~~~~~~~l~~~-Gv~~~~~g------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 420 SIRNKLISIARNK-GVMLGGCG------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp HHHHHHHHHHHHT-TEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHC-CeEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1356888899876 99999852 468999776 34899999999999998865
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-25 Score=218.44 Aligned_cols=336 Identities=13% Similarity=0.079 Sum_probs=209.9
Q ss_pred CCCCCceeeeeccccc--cc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 44 STNPSGVIQMGLAENQ--VS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 44 ~~~~~~~i~l~~~~n~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
+.....+|||..+... ++ ++.+.+.+.+..... ....|+. ....+|.+.|++++. .
T Consensus 96 D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~----------~~~~~~~-~~~~~Lae~L~~~~p---------~ 155 (465)
T 2yky_A 96 DVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVG----------LNLSTQT-ENEALFAEAVCDRFP---------S 155 (465)
Confidence 3445678898876543 32 344555444433210 0122322 233566666666542 2
Q ss_pred CCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHh---hhcCc--EEEEEecCCCCCCcCCHHHHHHHHH
Q 046900 120 LNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLR---WRTGI--KIVPIHCDSSNNFQITPQALEAAYK 192 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~---~~~G~--~v~~v~~~~~~~~~~d~~~l~~~l~ 192 (442)
.+.+++++++++++..+++.+. ..++.|++.+++|.++...+. ...|+ .++.+|. .|++.|++.++
T Consensus 156 ~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~ 228 (465)
T 2yky_A 156 IDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLK 228 (465)
Confidence 5789999999999999988752 345899999999987654332 01233 3333332 26889999887
Q ss_pred HHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEE
Q 046900 193 EAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVH 271 (442)
Q Consensus 193 ~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi 271 (442)
+. +.++++|++...+|+||.+. +.+.+++|.++|++||+++|+||+|. +.. +. ....... +...
T Consensus 229 ~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~-g~-~~a~~~~---------gv~p 293 (465)
T 2yky_A 229 RH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRL-SG-GGAQEML---------GISA 293 (465)
Confidence 42 12677666654356699655 57789999999999999999999999 632 22 1111111 2222
Q ss_pred EEecCcccCCCCCceeEEEeecCHHHHHHHHH-------ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 046900 272 IVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR-------MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQ 344 (442)
Q Consensus 272 ~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~-------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 344 (442)
-+.||||.+| .|+|+||++++ +.+.+.+.. ....+..++++|.++.+.|+... + ....++++++.+
T Consensus 294 Di~t~sK~lg-~G~piG~v~~~-~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~---~--~~~~~~~~~~~~ 366 (465)
T 2yky_A 294 DLTTLGKYIG-GGMSFGAFGGR-RDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIY---T--RQAASDLSASGD 366 (465)
Confidence 3558999999 69999999984 556655544 12234567888888877765321 1 123344445555
Q ss_pred HHHHHHHhC----CCeeecCCceEEEEEecCC-ccc---c---cChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEE
Q 046900 345 MIIEGLRSA----GIECLKGNAGLFCWMNLSP-LLE---E---QTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRV 413 (442)
Q Consensus 345 ~l~~~L~~~----g~~~~~~~~g~~~~~~~~~-~~~---~---~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRl 413 (442)
++.+.|++. ++....+..|.++|+.+.+ ... . ........++..|+++ ||.+.|+. |. . +
T Consensus 367 ~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-GV~v~p~~-~~----~---~ 437 (465)
T 2yky_A 367 RFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRK-GIYLAPRG-MY----A---L 437 (465)
Confidence 555555443 3333345667788888764 110 0 0011245788888876 99999975 32 1 6
Q ss_pred EeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 414 CFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 414 s~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
++.. +++++++++++|.+++++.+
T Consensus 438 s~~~-t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 438 SLEI-ADAGRDAFAEALADFIGEQR 461 (465)
Confidence 6655 89999999999999987653
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-22 Score=207.71 Aligned_cols=311 Identities=12% Similarity=0.046 Sum_probs=196.8
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh-HhhhcCcEEEEEec
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD-LRWRTGIKIVPIHC 174 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~-~~~~~G~~v~~v~~ 174 (442)
-..++++.+|++++ .+ ..+++++|+++++..++.+++++||.|+++.|+|..+... +.. .|++++.++.
T Consensus 174 ~i~e~e~~lA~~~g--------ae-~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l-~Ga~~v~v~~ 243 (730)
T 1c4k_A 174 PAVAAEKHAARVYN--------AD-KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAM-AGGRPVYLQT 243 (730)
T ss_dssp HHHHHHHHHHHHTT--------CS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTT-TCCEEEEECE
T ss_pred HHHHHHHHHHHHHC--------CC-cEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHH-CCCEEEEEeC
Confidence 35788888888875 22 3588999999999999999999999999999999988887 774 8999998887
Q ss_pred CCCCCCc----CCHHHH-----HHHHHHHHhc---CCce-eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEecc
Q 046900 175 DSSNNFQ----ITPQAL-----EAAYKEAESK---DMRV-RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEI 241 (442)
Q Consensus 175 ~~~~~~~----~d~~~l-----~~~l~~~~~~---~~~~-~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~ 241 (442)
+.+ .|. +|+++| ++++++.... ..++ +++++++| ||+|.+.+ +++|+++|+++++++++||+
T Consensus 244 ~~~-~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~livDeA 318 (730)
T 1c4k_A 244 NRN-PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDSA 318 (730)
T ss_dssp EEC-TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEECT
T ss_pred Ccc-ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEEEEcc
Confidence 532 333 688888 7776531000 1112 88999999 58999987 78899999999999999999
Q ss_pred CCcC-CCCCCCc-ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee-EEEeecCHHH--------HHHHHH---cccc
Q 046900 242 YSGS-AFSSSEF-VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV-GTIYSYNDKV--------VTTARR---MSSF 307 (442)
Q Consensus 242 y~~~-~~~~~~~-~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri-G~i~~~~~~~--------~~~~~~---~~~~ 307 (442)
|+.. .|++... .+..... ..+ .+..+++++.|+||++ +|++. |+++++++.+ ...++. ....
T Consensus 319 h~~~~~f~~~~~g~~~l~~~-~~g-~D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~s 394 (730)
T 1c4k_A 319 WVGYEQFIPMMRNSSPLLID-DLG-PEDPGIIVVQSVHKQQ--AGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMS 394 (730)
T ss_dssp TCCGGGSSGGGGGGCTTSCC-CCC-TTSCEEEEEECHHHHS--SCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSC
T ss_pred cccccccCcccCCcCccccc-ccC-CCCCCEEEEECCCCCC--CCCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCC
Confidence 9752 3322100 0111010 000 0134679999999986 55554 5664433322 112221 1111
Q ss_pred CCCcHHHHHHHH---HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeeecCCc--------------------
Q 046900 308 TLISSQTQYLLA---SMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS--AGIECLKGNA-------------------- 362 (442)
Q Consensus 308 ~~~s~~~q~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~-------------------- 362 (442)
...+.+...++. .++... .-.+..+++.++.+.+.+.|.+ .|+++..++.
T Consensus 395 tsp~~~~iaal~aA~~~l~~~-----~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~ 469 (730)
T 1c4k_A 395 TSPFYPMYAALDVNAAMQEGE-----AGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDY 469 (730)
T ss_dssp SSCCHHHHHHHHHHHHHHSHH-----HHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGG
T ss_pred CCCcHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchh
Confidence 233333333322 223221 1233445566667777788877 3777654321
Q ss_pred -----------------e-EE-----EEEecCCcc------cccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEE
Q 046900 363 -----------------G-LF-----CWMNLSPLL------EEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRV 413 (442)
Q Consensus 363 -----------------g-~~-----~~~~~~~~~------~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRl 413 (442)
+ ++ +.+.++... ...+ ..+.++.+.|.++ ||.+... +...+|+
T Consensus 470 ~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g-~~~~~l~~~L~e~-GI~v~~~------~~~~ir~ 541 (730)
T 1c4k_A 470 WRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFG-VPATIVANYLRDH-GIIPEKS------DLNSILF 541 (730)
T ss_dssp GBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSC-CCHHHHHHHHHHT-TCCCSEE------CSSEEEE
T ss_pred hccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccC-CCHHHHHHHHHHC-CcEEEEC------CCCeEEE
Confidence 1 12 445554210 0001 1367788888776 9987652 2467888
Q ss_pred Eee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 414 CFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 414 s~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
+++ ..++++++.+++.|.++.+.+.
T Consensus 542 ~~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 542 LMTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 876 2388999999999999987764
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.9e-21 Score=187.62 Aligned_cols=254 Identities=15% Similarity=0.103 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcC-CCCcChHHhHhh---------hcCcEEE
Q 046900 101 RQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPT-PYYPGFDRDLRW---------RTGIKIV 170 (442)
Q Consensus 101 r~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~-p~y~~~~~~~~~---------~~G~~v~ 170 (442)
++++++++.+.+| .+....+++++ ++++++..++.+++++||.|+++. |.|..+...+.. ..|++++
T Consensus 67 ~~~l~~~la~~~g--~~~~~~~i~~~-sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~ 143 (431)
T 3ht4_A 67 RDTLEKVYADVFG--AEAGLVRPQII-SGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYN 143 (431)
T ss_dssp HHHHHHHHHHHTT--CSEECCBTTSC-SHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEE
T ss_pred HHHHHHHHHHHhC--CCcccccceee-CHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEE
Confidence 5555555555544 11112233355 668999999999999999999998 999998854421 3799999
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEe-CCCCCCCcCCCHHHHHHHHHHHHh--cCcEEEEeccCCcCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLIT-NPSNPLGATIQRSVLEELLDFATR--KNIHLVSDEIYSGSAF 247 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~-~P~NPtG~~~~~~~l~~l~~~~~~--~~~~vi~De~y~~~~~ 247 (442)
.++++++ +.+|+++|++++++ ++++|+++ +|+||+|..++.+++++|+++|++ +|+++|+||+|+.+.+
T Consensus 144 ~v~~~~~--~~~d~e~l~~~l~~------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~ 215 (431)
T 3ht4_A 144 AVPLTEG--GLVDFEAVAAAIHS------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIE 215 (431)
T ss_dssp ECCBCTT--SSBCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSS
T ss_pred EeCCCCC--CCcCHHHHHhhcCC------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhcc
Confidence 9998763 67999999999864 88999999 599999999999999999999999 9999999999998776
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCC-CCceeEEEeecCHHHHHHHHHcccc---C-CC-cHHH-HHHHHH
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGL-PGFRVGTIYSYNDKVVTTARRMSSF---T-LI-SSQT-QYLLAS 320 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~-~G~RiG~i~~~~~~~~~~~~~~~~~---~-~~-s~~~-q~~~~~ 320 (442)
+..+. . + +..++++|+||.+|. .+...||+++ ++.+.+.++..... + .. +++. ..++..
T Consensus 216 ~~~~~-~---~---------g~Di~~~S~sK~lgg~~~~~GG~v~~-~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~ 281 (431)
T 3ht4_A 216 EQEPC-H---V---------GADLMAGSLIKNPGGGIVKTGGYIVG-KEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQ 281 (431)
T ss_dssp SCCGG-G---T---------TCSEEEEETTSGGGTTTCSSCEEEEE-CHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHH
T ss_pred CCCcc-c---c---------CCeEEEcCccccCCCCCCCceEEEEe-cHHHHHHHHHHhccCCcccccCccHHHHHHHHh
Confidence 43321 1 1 234889999999652 1133499999 56666665542211 1 01 1111 222222
Q ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC----CceEEEEEecCCcccccChhhHHHHHHHHHHc
Q 046900 321 MLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKG----NAGLFCWMNLSPLLEEQTREGELALWDSMLHE 392 (442)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 392 (442)
.+. .+....++..++.+++.+.|++.|+++.+. ..++.+.+.+++. +...++++.|.+.
T Consensus 282 ~l~-------~~~~~~~~~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~~------~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 282 GFF-------LAPHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDK------DRMIAFCQAIQYA 344 (431)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCCH------HHHHHHHHHHHHT
T ss_pred Hhh-------hHHHHHHHHHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCCH------HHHHHHHHHHHhc
Confidence 221 234456677788888999999888877542 2333555666531 2466788877654
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=196.77 Aligned_cols=177 Identities=18% Similarity=0.170 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS 176 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~ 176 (442)
..++++.++++++ . .+.+++++|+++++..++.+++++||.|+++.|+|.++...+.. .|++++.++.+.
T Consensus 207 v~~~ee~la~l~G--------~-d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~-~G~~~v~v~~~~ 276 (755)
T 2vyc_A 207 FGESEKYAARVFG--------A-DRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLML-TGAKPVYMVPSR 276 (755)
T ss_dssp HHHHHHHHHHHHT--------C-SEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHH-HCCEEEEECCCB
T ss_pred HHHHHHHHHHHhC--------C-CceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHH-cCCEEEEEeCCC
Confidence 5677777777765 2 24588999999999999999999999999999999999888885 899999998764
Q ss_pred CCCCc----C-----CHHHHHHHHHHHH----hcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCC
Q 046900 177 SNNFQ----I-----TPQALEAAYKEAE----SKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYS 243 (442)
Q Consensus 177 ~~~~~----~-----d~~~l~~~l~~~~----~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~ 243 (442)
+ .|. + |++.|++++++.. ..+.++++++++|| ||||.+.+ +++|+++|++|++++++||+|+
T Consensus 277 ~-~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~~ 351 (755)
T 2vyc_A 277 N-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWY 351 (755)
T ss_dssp C-TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTTC
T ss_pred C-ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcCc
Confidence 3 333 4 9999999997621 12334468999998 79999987 7888999999999999999998
Q ss_pred cCC-CCCC--CcccHHHHH--hhhcCCCCCcEEEEecCcccCCCCCce-eEEEeecCH
Q 046900 244 GSA-FSSS--EFVSIAEIL--EARQYKDSERVHIVYSLSKDLGLPGFR-VGTIYSYND 295 (442)
Q Consensus 244 ~~~-~~~~--~~~s~~~~~--~~~~~~~~~~vi~~~S~SK~~g~~G~R-iG~i~~~~~ 295 (442)
... ++.. +..++ .. .+ ...++++++.|+||++ +|++ .|+++++++
T Consensus 352 ~~~~~~~~~~~~~~~--~g~~aD---~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~ 402 (755)
T 2vyc_A 352 GYARFNPIYADHYAM--RGEPGD---HNGPTVFATHSTHKLL--NALSQASYIHVREG 402 (755)
T ss_dssp TTGGGCGGGTTSSSS--CSCCCC---CSSBEEEEEEETTTSS--SCCTTCEEEEEECC
T ss_pred hhcccCcccCCcchh--cCCcCC---ccCCCeEEEECccccc--cCcCCeeeeeecCc
Confidence 532 2211 11111 11 01 0135788999999986 5665 577766443
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-19 Score=182.70 Aligned_cols=175 Identities=17% Similarity=0.163 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS 176 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~ 176 (442)
..++++.+|++++ ....+++++|++.++..++.+++++||.|+++.++|.++...+.. .|++++.++.+.
T Consensus 197 i~eaE~~lA~~fG---------a~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~l-sGa~pv~v~~~~ 266 (715)
T 3n75_A 197 HKEAEQYIARVFN---------ADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMM-SDVTPIYFRPTR 266 (715)
T ss_dssp HHHHHHHHHHHHT---------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHH-SCCEEEEECCCB
T ss_pred HHHHHHHHHHHhC---------CCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHH-cCCEEEEEeccc
Confidence 5788888999876 134578889989999999999999999999999999999998885 999999998764
Q ss_pred CCCCcC---------CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC-
Q 046900 177 SNNFQI---------TPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA- 246 (442)
Q Consensus 177 ~~~~~~---------d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~- 246 (442)
+ .|.+ |++.|++++++... ...++++++++| ||+|.+++ +++|+++|+++ .+++||+|+...
T Consensus 267 ~-~~gi~~~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~--~livDEAH~~~~~ 338 (715)
T 3n75_A 267 N-AYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVK--SIHFDSAWVPYTN 338 (715)
T ss_dssp C-TTCCBCCCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCS--EEEEECTTCTTGG
T ss_pred c-ccccccCcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCC---HHHHHHHhCcC--cEEEccccccccc
Confidence 3 4554 89999999986321 012348999999 99999998 56667777665 379999998643
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcE-EEEecCcccCCCCCc-eeEEEeecCH
Q 046900 247 FSSSEFVSIAEILEARQYKDSERV-HIVYSLSKDLGLPGF-RVGTIYSYND 295 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~v-i~~~S~SK~~g~~G~-RiG~i~~~~~ 295 (442)
|+. .......+... ...+.+ +++.|+||+++ |+ ..||++++++
T Consensus 339 f~~-~~~~~~al~~g---~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~ 383 (715)
T 3n75_A 339 FSP-IYEGKCGMSGG---RVEGKVIYETQSTHKLLA--AFSQASMIHVKGD 383 (715)
T ss_dssp GSG-GGTTSSTTSSS---CCTTCEEEEEECHHHHSS--CCTTCEEEEEESC
T ss_pred cCC-ccccccccccC---cCCCEEEEEEeccccccc--CCCCeeEEEeCch
Confidence 321 11100011000 002443 56899999974 43 4688888554
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.1e-18 Score=162.01 Aligned_cols=289 Identities=13% Similarity=0.101 Sum_probs=188.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCC-CcEEE-ecChHHHHHHHHHhhcCC--CCeEEEcCCCCcC--hHHhHhhhcCcEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDL-NRIVV-TAGATAANELLTFILADP--GDALLVPTPYYPG--FDRDLRWRTGIKIV 170 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~-~~i~~-t~G~~~ai~~~~~~l~~~--gd~Vl~~~p~y~~--~~~~~~~~~G~~v~ 170 (442)
+.+.|+.++++++ +++ ++|++ |.|+|+++++++..++.+ ||+|++..-++.. +...++ ..|..++
T Consensus 60 ~~~ar~~la~ll~--------~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~-~~G~~~~ 130 (377)
T 3e77_A 60 INNTENLVRELLA--------VPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAK-KFGTINI 130 (377)
T ss_dssp HHHHHHHHHHHHT--------CCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHHHHHHHHT-TTSEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHHHHHHHHH-HhCCceE
Confidence 4566777777765 443 57888 578999999999998865 8998876655433 223344 3788877
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
.++.+.. +..+++.++..++ +++++|.+++..|.||.+.+. +|+++++++++|.+.+- +.
T Consensus 131 ~~~~~~~--~~~~~~~~~~~i~------~~t~lV~~~h~et~tG~~~pi--------i~~~~~~~~~vD~~q~~---g~- 190 (377)
T 3e77_A 131 VHPKLGS--YTKIPDPSTWNLN------PDASYVYYCANETVHGVEFDF--------IPDVKGAVLVCDMSSNF---LS- 190 (377)
T ss_dssp CSCCCSS--SCSCCCGGGCCCC------TTCSCEEEESEETTTTEECSS--------CCCCTTCCEEEECTTTT---TS-
T ss_pred EeccCCC--cCCCCChHHhccC------CCccEEEEeCccCchheEchh--------hhccCCCEEEEEccccc---CC-
Confidence 7776543 3455666655443 378899999888999999985 36788999999999884 22
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHH-------------HHHHHHccccCCCcHHHHHH
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKV-------------VTTARRMSSFTLISSQTQYL 317 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~-------------~~~~~~~~~~~~~s~~~q~~ 317 (442)
.+..+.. .+ +++.|..|.+|.+| +|+++..++.+ ....+....+++.+.....+
T Consensus 191 ~~id~~~---------~~--~~~~s~~K~~gp~G--~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~ 257 (377)
T 3e77_A 191 KPVDVSK---------FG--VIFAGAQKNVGSAG--VTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYV 257 (377)
T ss_dssp SCCCGGG---------CS--EEEEEGGGTTSCTT--CEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHH
T ss_pred CCCchhh---------cC--EEEEecccccCCCc--cEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHH
Confidence 2222221 13 35688999999888 57777643221 11111122234444444455
Q ss_pred HHHHhcCchhHHHH--HHHHHHHHHHHHHHHHHHHHhC-CCeeec----CCceEEEEEecCCcccccChhhHHHHHHHHH
Q 046900 318 LASMLSNKKFTENY--IKTNRERLQKRYQMIIEGLRSA-GIECLK----GNAGLFCWMNLSPLLEEQTREGELALWDSML 390 (442)
Q Consensus 318 ~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~ 390 (442)
+.+.++ ++.+. ++...++.++..+++.+.|++. |+...+ ..++..+.+.++.... ..+-...+...+.
T Consensus 258 l~~al~---~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~--~~~~~~~~l~~l~ 332 (377)
T 3e77_A 258 MGLVLE---WIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKG--DDALEKRFLDKAL 332 (377)
T ss_dssp HHHHHH---HHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTC--CHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCC--chhHHHHHHHHHH
Confidence 555544 33332 6777888889999999999987 776432 1234455566664211 0001135666665
Q ss_pred HcCcEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHH
Q 046900 391 HEVKLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 391 ~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~ 437 (442)
++ ||.+++|... .+.+|+|+.. .++++++.+++.|+++++++
T Consensus 333 ~~-Gi~~~~g~~~----~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 333 EL-NMLSLKGHRS----VGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp HT-TEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HC-CcEEeCCCCc----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 55 9999988632 3569999973 38999999999999998775
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-17 Score=155.97 Aligned_cols=330 Identities=13% Similarity=0.167 Sum_probs=198.1
Q ss_pred CCCceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCC--CcchHHHHHHHHHHHHHHhCCCCccC-CCc
Q 046900 46 NPSGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQD--YHGLKSFRQAMASFMEQIRGGRAKFD-LNR 122 (442)
Q Consensus 46 ~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~-~~~ 122 (442)
|+..+++|+.+..+++.+.++............+ .+ .....+... ..-+.+.|+.++++++ ++ +++
T Consensus 2 ~~~~~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~--~s-~~~~~hr~~~~~~~~~~~r~~la~ll~--------~~~~~~ 70 (361)
T 3m5u_A 2 NAMRKINFSAGPSTLPLEILEQAQKELCDYQGRG--YS-IMEISHRTKVFEEVHFGAQEKAKKLYE--------LNDDYE 70 (361)
T ss_dssp --CCCEECCSSSCCCCHHHHHHHHHTSSSGGGSS--SC-GGGSCSSSHHHHHHHHHHHHHHHHHHT--------CCTTEE
T ss_pred CccceEeecCCCCCCcHHHHHHHHHHHHhcccCC--ce-eeccCCCCHHHHHHHHHHHHHHHHHhC--------CCCCce
Confidence 3446678887777776655554443332110000 00 000000000 1224566777777765 43 457
Q ss_pred EEE-ecChHHHHHHHHHhhcCCCCeEEEcCC-CCcC-hHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCC
Q 046900 123 IVV-TAGATAANELLTFILADPGDALLVPTP-YYPG-FDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDM 199 (442)
Q Consensus 123 i~~-t~G~~~ai~~~~~~l~~~gd~Vl~~~p-~y~~-~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~ 199 (442)
|++ |+|+|+++++++..++ +||++++..- .|.. +...++ ..|+++..++.++.+.+.++++. + +++
T Consensus 71 v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~-~~G~~v~~~~~~~~g~~~~~~~~-~--l~~------ 139 (361)
T 3m5u_A 71 VLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQ-ILGVNVKTVASSEESNFDHIPRV-E--FSD------ 139 (361)
T ss_dssp EEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHH-HTTCCEEEEEECTTTTSCSCCCC-C--CCT------
T ss_pred EEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHH-HcCCceEEEecccCcCCCcCChh-h--cCC------
Confidence 887 9999999999999988 8886532222 2211 223344 37999999998876544345554 3 543
Q ss_pred ceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCccc
Q 046900 200 RVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKD 279 (442)
Q Consensus 200 ~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~ 279 (442)
++++|.+++..|.||.+.+. +++ +++++++|.+.+- +.. +..+.. .-+++.|..|.
T Consensus 140 ~t~lv~~~~~e~~tG~~~~~--------i~~-~~~~~~vD~~q~~---g~~-~id~~~-----------~d~~~~s~~K~ 195 (361)
T 3m5u_A 140 NADYAYICSNNTIYGTQYQN--------YPK-TKTPLIVDASSDF---FSR-KVDFSN-----------IALFYGGVQKN 195 (361)
T ss_dssp TSSEEEEESEETTTTEECSS--------CCC-CSSCEEEECGGGT---TSS-CCCCTT-----------EEEEEEETTTT
T ss_pred CCCEEEEeCCCCCcceeCCc--------ccc-cCCEEEEEccccc---CCC-CCCccc-----------CCEEEEechhc
Confidence 78899999888999998772 333 4999999999874 221 222211 12567899999
Q ss_pred CCCCCceeEEEeecCHHHHHHHHH---------------ccccCCCcHHHHHHHHHHhcCchhHHHH--HHHHHHHHHHH
Q 046900 280 LGLPGFRVGTIYSYNDKVVTTARR---------------MSSFTLISSQTQYLLASMLSNKKFTENY--IKTNRERLQKR 342 (442)
Q Consensus 280 ~g~~G~RiG~i~~~~~~~~~~~~~---------------~~~~~~~s~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~~~ 342 (442)
+|.+| +|+++.. +.+.+.+.. ...+++.+.....++.+.++ ++.+. ++...++.++.
T Consensus 196 ~gp~G--~g~l~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~---~l~~~gG~~~i~~~~~~l 269 (361)
T 3m5u_A 196 AGISG--LSCIFIR-KDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMD---WLLNQGGLDKVHEKNSQK 269 (361)
T ss_dssp SSCTT--CEEEEEE-HHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH---HHHTTTCHHHHHHHHHHH
T ss_pred cCCCc--cEEEEEc-HHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHH---HHHHccCHHHHHHHHHHH
Confidence 99777 6888884 443333221 11123334444444444443 22222 56777888888
Q ss_pred HHHHHHHHHhCC-C-eeec-C--CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeec
Q 046900 343 YQMIIEGLRSAG-I-ECLK-G--NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFAN 417 (442)
Q Consensus 343 ~~~l~~~L~~~g-~-~~~~-~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~ 417 (442)
++++.+.|++.+ + .... + .....+.+.+++.. .. ..++...| +++||.+++|... .+.+|+|+..
T Consensus 270 ~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~---~~--~~~~~~~L-~~~gI~~~~g~~~----~g~iRiS~~~ 339 (361)
T 3m5u_A 270 ATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKNK---DL--EPLFVKEA-EEAGMIGLKGHRI----LGGIRASIYN 339 (361)
T ss_dssp HHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSCT---TH--HHHHHHHH-HHTTEECCBCCTT----TCSEEEECCT
T ss_pred HHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCch---hh--hHHHHHHH-HHCCCEEecCCCc----cCeEEEEccC
Confidence 999999998875 5 4432 1 22334555665410 11 23566666 4459999887542 2459999973
Q ss_pred -CCHHHHHHHHHHHHHHHHHH
Q 046900 418 -MSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 418 -~~~e~i~~~l~~l~~~l~~~ 437 (442)
.++++++++++.|+++.+++
T Consensus 340 ~~t~edId~l~~al~~~~~~~ 360 (361)
T 3m5u_A 340 ALNLDQVKTLCEFMKEFQGKY 360 (361)
T ss_dssp TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 38999999999999998765
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=160.32 Aligned_cols=287 Identities=9% Similarity=0.056 Sum_probs=184.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCC-CcEEE-ecChHHHHHHHHHhhcCCCCeEEEcCCCCcC--hHHhHhhhcCcEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDL-NRIVV-TAGATAANELLTFILADPGDALLVPTPYYPG--FDRDLRWRTGIKIVP 171 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~-~~i~~-t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~--~~~~~~~~~G~~v~~ 171 (442)
-+.+.|+.++++++ ++. ++|++ |+|+|+++++++..++.+||+|++..-++.. +...++ ..| ++..
T Consensus 73 ~~~~ar~~la~ll~--------~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~~~~~a~-~~G-~v~~ 142 (386)
T 3qm2_A 73 VAEEAEQDFRDLLN--------IPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAK-KYC-APQI 142 (386)
T ss_dssp CCHHHHHHHHHHHT--------CCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHT-TTS-EEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHH-HhC-CeEE
Confidence 46789999999986 433 46888 6899999999999999999998754443332 223344 378 8888
Q ss_pred EecC-CCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC
Q 046900 172 IHCD-SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS 249 (442)
Q Consensus 172 v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~ 249 (442)
++.+ ++.++.++++.+++.+++ ++++|.+++..|.||.+ .+.++ |. +++++++|.+.+- +.
T Consensus 143 v~~~~~~~G~~~~~~~~~~~l~~------~t~lV~~~h~et~tG~~i~pi~~---i~-----~g~~~~vDa~qs~---g~ 205 (386)
T 3qm2_A 143 IDAKITVDGKRAVKPMREWQLSD------NAAYLHYCPNETIDGIAIDETPD---FG-----PEVVVTADFSSTI---LS 205 (386)
T ss_dssp EECEEEETTEEEECCGGGCCCCT------TCSCEEECSEETTTTEECCCCCC---CC-----TTCCEEEECTTTT---TS
T ss_pred EecCcccCCCCCCchHHHhhcCC------CCcEEEEECCcCCcCEecCchhh---hc-----CCCEEEEEccccc---CC
Confidence 8876 112333566777666543 78888888888899996 66333 32 7999999999873 22
Q ss_pred CCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHH-------------HHHHHHccccCCCcHHHHH
Q 046900 250 SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKV-------------VTTARRMSSFTLISSQTQY 316 (442)
Q Consensus 250 ~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~-------------~~~~~~~~~~~~~s~~~q~ 316 (442)
.+..+.. .+ +.+.|..|.+|.+| +|++++.++.+ ....+....+++.+.+...
T Consensus 206 -~pidv~~---------~~--~~~~s~hK~lGP~G--~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~ 271 (386)
T 3qm2_A 206 -APLDVSR---------YG--VIYAGAQKNIGPAG--LTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWY 271 (386)
T ss_dssp -SCCCGGG---------CS--EEEEETTTTTCCTT--EEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHH
T ss_pred -CCCCccc---------cC--EEEEecccccCCCc--cEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHH
Confidence 2223221 13 35688999999777 68888743321 0111111112233333444
Q ss_pred HHHHHhcCchhHHHH--HHHHHHHHHHHHHHHHHHHHhCCCe-ee-cC--CceEEEEEecCCcccccChhhHHHHHHHHH
Q 046900 317 LLASMLSNKKFTENY--IKTNRERLQKRYQMIIEGLRSAGIE-CL-KG--NAGLFCWMNLSPLLEEQTREGELALWDSML 390 (442)
Q Consensus 317 ~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~-~~-~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~ 390 (442)
++.++++ ++.+. ++...++.++.++++.+.|++.|+- .. .+ .+...+.+.++... . ..++...|
T Consensus 272 ~l~~Al~---~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~~~----~--~~~~~~~L- 341 (386)
T 3qm2_A 272 LSGLVFK---WLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLADNT----L--DKVFLEES- 341 (386)
T ss_dssp HHHHHHH---HHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESSGG----G--HHHHHHHH-
T ss_pred HHHHHHH---HHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCCcc----c--cHHHHHHH-
Confidence 4444443 33333 6777888888999999999887652 21 11 23335556666411 1 24566665
Q ss_pred HcCcEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHH
Q 046900 391 HEVKLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 391 ~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~ 437 (442)
+++||.+++|... .+.+|+|+.. .++++++++++.|+++.+++
T Consensus 342 ~~~gI~~~~g~~~----~~~iRiS~~~~~t~edId~l~~~l~~~~~~~ 385 (386)
T 3qm2_A 342 FAAGLHALKGHRV----VGGMRASIYNAMPIEGVKALTDFMIDFERRH 385 (386)
T ss_dssp HHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCEEeCCCCC----cCeEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4559999887643 2459999973 38999999999999998764
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-16 Score=155.75 Aligned_cols=280 Identities=16% Similarity=0.125 Sum_probs=168.9
Q ss_pred CCcEEEecChHHHHHHHHHhhcC--CCCeEEEcCCCCcChHHhHhhh-----cCcEEEEEecCCCCCCcCCHHHHHHHHH
Q 046900 120 LNRIVVTAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWR-----TGIKIVPIHCDSSNNFQITPQALEAAYK 192 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~-----~G~~v~~v~~~~~~~~~~d~~~l~~~l~ 192 (442)
.+.|++++++++|+..+++.... ..+.|+...-+|.+....+... .......+|. -|.+.+++.++
T Consensus 143 ~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-------nd~~~l~~~l~ 215 (454)
T 4ao9_A 143 IEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-------NDAQTARAQIE 215 (454)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-------TCHHHHHHHHH
T ss_pred CCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC-------chHHHHHHHHh
Confidence 57899999999999998876532 3467888888887643321100 1223334432 27899999987
Q ss_pred HHHhcCCceeEEEEeCCCCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEE
Q 046900 193 EAESKDMRVRGVLITNPSNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVH 271 (442)
Q Consensus 193 ~~~~~~~~~~~v~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi 271 (442)
+. +.++.+|++..-....|.+. +.+-+++|.++|++||+++|.||++.. ..+..+ ..+... ..+.
T Consensus 216 ~~---~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~--a~e~~g-----v~PD-- 281 (454)
T 4ao9_A 216 RH---GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHG--LANKLG-----IRSD-- 281 (454)
T ss_dssp HT---GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTC--HHHHHT-----CCCS--
T ss_pred hc---CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCcccc--chhccC-----CCCc--
Confidence 64 23565555543355677655 566699999999999999999999873 223222 111111 0122
Q ss_pred EEecCcccCCCCCceeEEEeecCHHHHHHHHHc------cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 046900 272 IVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM------SSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQM 345 (442)
Q Consensus 272 ~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (442)
+-+++|.+| .|+.+|.+++ .+++.+.+... ...+..++++.+++.+.|+...- + +..++++++-++
T Consensus 282 -i~t~gK~lg-gG~Piga~~~-~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~-~----~~~~~~~~~g~~ 353 (454)
T 4ao9_A 282 -LTTLGKYIG-GGMSFGAFGG-RADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT-P----EAAGALAERGEA 353 (454)
T ss_dssp -EEEEEGGGG-TTSSCEEEEE-CHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC-H----HHHHHHHHHHHH
T ss_pred -EEEeccccC-CCCcceeeee-HHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc-c----ChhHHHHHHHHH
Confidence 237889998 8999999998 66776665321 12234567777766665542211 1 122223333333
Q ss_pred HHHHHH----hCCCeeecCCceEEEEEecCCcc-----c--ccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEE
Q 046900 346 IIEGLR----SAGIECLKGNAGLFCWMNLSPLL-----E--EQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVC 414 (442)
Q Consensus 346 l~~~L~----~~g~~~~~~~~g~~~~~~~~~~~-----~--~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls 414 (442)
|.+.|+ +.++......-|.++.+.+.... . ..+..-...++..|+++ ||.+.|. +++.++
T Consensus 354 l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-Gv~~~p~--------~~~~~s 424 (454)
T 4ao9_A 354 LRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNE-DIYSSPR--------GFVVLS 424 (454)
T ss_dssp HHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHT-TEECCTT--------CEEECC
T ss_pred HHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHC-CEEEcCC--------CCEEEe
Confidence 333333 33433322233445555553211 0 01111235677788887 9998773 345556
Q ss_pred eecCCHHHHHHHHHHHHHHHHHHH
Q 046900 415 FANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 415 ~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
... +++++++++++|.+++.++.
T Consensus 425 ~~~-T~~dId~~l~al~~~l~~~~ 447 (454)
T 4ao9_A 425 LPL-TDADIDRYVAAIGSFIGGHG 447 (454)
T ss_dssp TTC-CHHHHHHHHHHHHHHHHHSG
T ss_pred CCC-CHHHHHHHHHHHHHHHHhcc
Confidence 554 89999999999999998765
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-15 Score=141.64 Aligned_cols=301 Identities=16% Similarity=0.177 Sum_probs=184.5
Q ss_pred CCcEEEecChHHHHHHHHHhhcCC----CCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC-CCCCcCCHHHHHHHHHHH
Q 046900 120 LNRIVVTAGATAANELLTFILADP----GDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS-SNNFQITPQALEAAYKEA 194 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~~----gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~-~~~~~~d~~~l~~~l~~~ 194 (442)
....++++|+|.++..++.+.+++ +|.|+++.-+|.....++.+ .|++++.++... +..+.+|++.++++|+++
T Consensus 134 ~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL-~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~ 212 (501)
T 3hl2_A 134 VANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMIT-AGFEPVVIENVLEGDELRTDLKAVEAKVQEL 212 (501)
T ss_dssp CCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHH-TTCEEEEECEEEETTEEEECHHHHHHHHHHH
T ss_pred CCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHH-cCCeEEEEeeeecccccCCCHHHHHHHHHhc
Confidence 346999999997777666666553 49999999999999999985 999999997621 125789999999999975
Q ss_pred HhcCCceeEEEEe-CCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhh-hcCCCCCcEEE
Q 046900 195 ESKDMRVRGVLIT-NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEA-RQYKDSERVHI 272 (442)
Q Consensus 195 ~~~~~~~~~v~l~-~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~-~~~~~~~~vi~ 272 (442)
+.+..+++++ .|+|-.|.+-+ +++|+++|++||+++++|++|+... .....+..+ ... ..--++
T Consensus 213 ---ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~gIpllVDeAhGah~------~~~~~lp~sA~~~--GrAD~v 278 (501)
T 3hl2_A 213 ---GPDCILCIHSTTSCFAPRVPDR---LEELAVICANYDIPHIVNNAYGVQS------SKCMHLIQQGARV--GRIDAF 278 (501)
T ss_dssp ---CGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTC------HHHHHHHHHHHHH--SCCCEE
T ss_pred ---CCCcEEEEEecCCCCCCccccc---HHHHHHHHHHcCCeEEEeCcchhhh------hhhhhhHHHHHhc--CCCcEE
Confidence 2233344444 44564445555 9999999999999999999998522 111111111 000 012357
Q ss_pred EecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046900 273 VYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS 352 (442)
Q Consensus 273 ~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 352 (442)
+.|.+|.+-++ +..|.+...++.+.+.+.....-...++++..+.+.++. +-.+.++++.++..+..+++.+.|++
T Consensus 279 VqS~HK~llvp-IGG~ii~~~d~e~l~~~~~~yPGr~S~Spsldl~~tLL~---lGr~Gy~~ll~e~~ela~~L~~~L~~ 354 (501)
T 3hl2_A 279 VQSLDKNFMVP-VGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLS---LGSNGYKKLLKERKEMFSYLSNQIKK 354 (501)
T ss_dssp EEEHHHHHCCC-SSCEEEEESCHHHHHHHHHTSCSCBCSHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Eecccccceee-cCceEEEeCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999997433 444555566666555543322111223344434444333 22333466666667777777777766
Q ss_pred C----CCeeec-CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcE---EE-eCCC----------CCCCCC----CC
Q 046900 353 A----GIECLK-GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKL---NI-SPGS----------SCHCSE----PG 409 (442)
Q Consensus 353 ~----g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi---~v-~pg~----------~f~~~~----~~ 409 (442)
. |-++.. +....-+.+.+...... .......+-..|..+ +| -| .+|. .|+.-. -.
T Consensus 355 la~~~ge~ll~~~~n~is~a~tl~~~~~~-~~~~~t~~gs~Lf~r-~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~ 432 (501)
T 3hl2_A 355 LSEAYNERLLHTPHNPISLAMTLKTLDEH-RDKAVTQLGSMLFTR-QVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCA 432 (501)
T ss_dssp HHHTTTCCBCCCTTCSSEEEEECTTSCTT-TSCHHHHHHHHHHHT-TCCSCEEECTTCCEEETTEEESSTTTTSSCCSSC
T ss_pred HHHhcChhhcCCCCCceeEEEeccccccc-ccccHHHHHHHHHhc-CCCcceeecCCCceEECCeeecCcccCCCCCCch
Confidence 3 545543 33334455555543111 111244555556554 43 33 4555 454321 24
Q ss_pred EEEEEee-cCCHHHHHHHHHHHHHHHHHHHhhc
Q 046900 410 WFRVCFA-NMSEQTLEVALKRIHNFMQKRERRR 441 (442)
Q Consensus 410 ~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~~~ 441 (442)
|+-++.+ .+++++++.++++|.+++.+.++++
T Consensus 433 yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~~ 465 (501)
T 3hl2_A 433 YLNAASAIGMKMQDVDLFIKRLDRCLKAVRKER 465 (501)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 6777665 4589999999999999999887654
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-14 Score=135.70 Aligned_cols=310 Identities=15% Similarity=0.127 Sum_probs=184.4
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCCccCCC----cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhH-----
Q 046900 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFDLN----RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDL----- 161 (442)
Q Consensus 91 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~----~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----- 161 (442)
|+...-...+..-..+...+.++ ++.. ||-.-+| ++|+..++.+|++|||+|+..+..+.++...-
T Consensus 92 YgGce~vD~iE~la~~rak~lF~----a~~A~w~VNVQP~SG-s~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~ 166 (490)
T 3ou5_A 92 YGGAEVVDEIELLCQRRALEAFD----LDPAQWGVNVQPYSG-SPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDV 166 (490)
T ss_dssp ----CHHHHHHHHHHHHHHHHTT----CCTTTEEEECCCSSH-HHHHHHHHHHHCC-CCCEECBC---------------
T ss_pred cCCChHHHHHHHHHHHHHHHHhC----CCccccCCCCCcCCH-HHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCC
Confidence 43333345565555667777766 4444 5666655 56888899999999999999888776653211
Q ss_pred -hh-hcC--cEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEE
Q 046900 162 -RW-RTG--IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLV 237 (442)
Q Consensus 162 -~~-~~G--~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi 237 (442)
.. ..| .+.++++++++ ...+|.|.+++...++ ++|+|+...-.+|- .++ .+++.++|.+.|.+++
T Consensus 167 ~~v~~sg~~~~~~~Y~vd~~-t~~IDyd~~~~~A~~~-----kPklIi~G~SaY~r--~id---~~~~reIAd~vGA~Lm 235 (490)
T 3ou5_A 167 KRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLF-----RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLL 235 (490)
T ss_dssp -------------CBCEETT-TTEECHHHHHHHHHHH-----CCSEEEECCSSCCS--CCC---HHHHHHHHHHHTCEEE
T ss_pred cccccccccccccccccCCC-CCcccHHHHHHHHhhc-----CCCeEEECCccCcc--ccC---HHHHHHHHhhcccEEE
Confidence 00 012 25566666654 3579999999998876 88887765433443 233 6777777889999999
Q ss_pred EeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCH--------------HHHHHHHH
Q 046900 238 SDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYND--------------KVVTTARR 303 (442)
Q Consensus 238 ~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~--------------~~~~~~~~ 303 (442)
+|-+|......+..+++..... -++..|.+|+| .|-|.|.|++.++ .+.+.+.+
T Consensus 236 ~DmAHiaGLVA~g~~psP~~~A----------DvVTtTTHKTL--rGPrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~ 303 (490)
T 3ou5_A 236 ADMAHISGLVAAKVIPSPFKHA----------DIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINF 303 (490)
T ss_dssp EECGGGHHHHHTTSSCCGGGTC----------SEEEEESSSTT--CSCSCEEEEEECSEEEECC--CCEEECCCHHHHHH
T ss_pred echhhhhhhhcccccCCccccc----------eEEeccccccc--cCCCceEEEeccccccccccccchhHHHHHHHHHh
Confidence 9999864322233343433331 16789999988 7889999998542 34455554
Q ss_pred ccccCC-CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec-CCceEEEEEecCCcccccChhh
Q 046900 304 MSSFTL-ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK-GNAGLFCWMNLSPLLEEQTREG 381 (442)
Q Consensus 304 ~~~~~~-~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~ 381 (442)
...++. .++..-.+++.+..-.+......+...++..++.+.|.+.|.+.|+++.. ...+-.+++++.....
T Consensus 304 aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGgTdnHlvLvDl~~~g~------ 377 (490)
T 3ou5_A 304 AVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGL------ 377 (490)
T ss_dssp HHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC------
T ss_pred hcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCceEEEEeccccCC------
Confidence 433322 22221111111111111122234566778888999999999999999875 2334466778754211
Q ss_pred HHHHHHHHHHcCcEEEe----CCCCCCCCCCCEEEEEee-----cCCHHHHHHHHHHHHHHHH
Q 046900 382 ELALWDSMLHEVKLNIS----PGSSCHCSEPGWFRVCFA-----NMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 382 ~~~l~~~l~~~~gi~v~----pg~~f~~~~~~~iRls~~-----~~~~e~i~~~l~~l~~~l~ 435 (442)
....++.+|++.||.+. |+.. .+..++.|||+.. .+.++++++..+.|.+++.
T Consensus 378 tG~~ae~~Le~agItvNkN~iP~D~-sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 378 DGARAERVLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CHHHHHHHHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcEECCCCCCCCC-CCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 12445666788899886 5542 1122456999975 3478889888888877764
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-14 Score=141.53 Aligned_cols=365 Identities=14% Similarity=0.099 Sum_probs=201.2
Q ss_pred CCCCCCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|.-+...+.+||+..+ .+.++ ++.+.+.+.++...... ....+.+. +....+++.+.+...
T Consensus 56 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~--------~~~~~~~~----~~~~~lae~L~~~~p-- 121 (456)
T 4atq_A 56 GIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTH--------TCFMVTPY----EGYVAVTEQLNRLTP-- 121 (456)
T ss_dssp TEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSC--------CTTTTSCC----HHHHHHHHHHHHHSS--
T ss_pred CEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccC--------cccCccCc----HHHHHHHHHHHHhCC--
Confidence 34445566788998765 34443 35555555433211000 00111122 233345555554321
Q ss_pred CccCCCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcC-------------cEEEEEecCCC---
Q 046900 116 AKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTG-------------IKIVPIHCDSS--- 177 (442)
Q Consensus 116 ~~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G-------------~~v~~v~~~~~--- 177 (442)
.-..+.+++++++++|++.+++... .....|+...-+|.+....+....+ -.+..+|....
T Consensus 122 -~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~ 200 (456)
T 4atq_A 122 -GDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFRE 200 (456)
T ss_dssp -CSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGC
T ss_pred -CCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceeccccccccc
Confidence 0124579999999999999886542 2346888888888775432210111 13444443211
Q ss_pred -CCCcCCHHHHHHHHHHHHh--cCCceeEEEEeCCCCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 178 -NNFQITPQALEAAYKEAES--KDMRVRGVLITNPSNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 178 -~~~~~d~~~l~~~l~~~~~--~~~~~~~v~l~~P~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
....-+.+.+++.+..... .+.++.++++..-..-.|.+ .+.+-+++|.++|++||+++|.||+...+...|..+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a 280 (456)
T 4atq_A 201 ENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFA 280 (456)
T ss_dssp SSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSG
T ss_pred CCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCcccccc
Confidence 1011124444444443221 12355555554335556765 4566799999999999999999999998655554322
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhcC---chhH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLSN---KKFT 328 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~---~~~~ 328 (442)
...+.- .+| +-+++|.+| .|+.+|.+++ .+.+.+.+.. ....+..++++.+++.+.|+. .+.
T Consensus 281 -~e~~gv-----~PD----ivt~gK~lg-gg~P~~av~~-~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~~l- 347 (456)
T 4atq_A 281 -VDHEGV-----VPD----IITMAKGIA-GGLPLSAITG-RADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHDL- 347 (456)
T ss_dssp -GGGTTC-----CCS----EEEECGGGG-TTSSCEEEEE-EHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTH-
T ss_pred -ccccCC-----CCc----hhhhhhccc-CcCCceeeEe-cHHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhccH-
Confidence 111110 122 236789998 8999999998 5666555432 223355678777777776652 221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeeec--CCceEEEEEecCCcc-cccChhhHHHHHHHHHHcCcEEEeCCCCCCC
Q 046900 329 ENYIKTNRERLQKRYQMIIEGLRSAGIECLK--GNAGLFCWMNLSPLL-EEQTREGELALWDSMLHEVKLNISPGSSCHC 405 (442)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~ 405 (442)
.++.+++-+.+.++.+.+.+.+...+..+.. -.-|+++.+++.... .....+....+...++++ ||++.++..
T Consensus 348 ~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~-Gvl~~~~g~--- 423 (456)
T 4atq_A 348 NGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKE-GVIILTCGT--- 423 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECEEECT---
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHC-CCEEEecCC---
Confidence 2223333333333333333322111112211 234567777764321 112223356788888887 999887532
Q ss_pred CCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 406 SEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 406 ~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
....|||... .++++++++++++|.++++.+
T Consensus 424 -~~~~irl~PpL~it~~~id~~l~~l~~al~a~ 455 (456)
T 4atq_A 424 -YGNVIRLLPPLVISDELLIDGLEVLAAAIKAH 455 (456)
T ss_dssp -TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -CCCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 2357999876 458999999999999998753
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-12 Score=124.85 Aligned_cols=322 Identities=14% Similarity=0.134 Sum_probs=184.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCC----CCeEEEcCCCCcChHHhHhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADP----GDALLVPTPYYPGFDRDLRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~----gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v 172 (442)
...+.+.+..++.+..|.+ +....++++|+|.++.+++.+.+++ ++.|+++.-+|..+..++.. .|+.++.+
T Consensus 96 ~~~~e~~~~~~~~~~lGlp---~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l-~Gl~p~~v 171 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAGVH---SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVT-AGFEPVVI 171 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCT---TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHH-TTCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCC---CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHH-cCCeeEEE
Confidence 5567778888888877621 2234688999884444444444343 89999999999999999995 99998888
Q ss_pred ecCC-CCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCC-CCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 173 HCDS-SNNFQITPQALEAAYKEAESKDMRVRGVLITNPS-NPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 173 ~~~~-~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~-NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
+... +..+.+|++.|+++|++... +.+++++.+|+ +.+|.+-+ +++|+++|++||+++++|++|+....
T Consensus 172 ~~~~~~~~~~id~~~le~aI~~~~~---~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~~~~--- 242 (450)
T 3bc8_A 172 ENVLEGDELRTDLKAVEAKIQELGP---EHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSS--- 242 (450)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHCG---GGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCH---
T ss_pred EeeecCccCCcCHHHHHHHHHhcCC---CCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCchhhh---
Confidence 6521 23578999999999987521 23466666664 56777766 88999999999999999999985221
Q ss_pred CcccHHHHHhh-hcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHH
Q 046900 251 EFVSIAEILEA-RQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 251 ~~~s~~~~~~~-~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~ 329 (442)
....+..+ ... ..--.++.|++|.+. .....+++...++...+.+.........++++......++..+ .
T Consensus 243 ---~~~~l~~~a~~~--~~AD~~v~S~HK~l~-a~~~~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~G---~ 313 (450)
T 3bc8_A 243 ---KCMHLIQQGARV--GRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG---C 313 (450)
T ss_dssp ---HHHHHHHHHHHH--SCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH---H
T ss_pred ---hhHhHHHHHhcc--cCCCEEEECCccCCC-chhccEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH---H
Confidence 11111111 000 011246689999985 5556778777565555444432211122344444444433221 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----hCCCeeecCCc-eEEEEEecCCcccccChhhHHHHHHHHHHc--CcEEEeC---
Q 046900 330 NYIKTNRERLQKRYQMIIEGLR----SAGIECLKGNA-GLFCWMNLSPLLEEQTREGELALWDSMLHE--VKLNISP--- 399 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~----~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~gi~v~p--- 399 (442)
+.+.+..+...+..+++.+.|+ ++|..+...+. +.-..+.++....... .+...+.-.+... .|..+.+
T Consensus 314 ~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~D~tkl~i~~~~~g~sG~~v~~~~~ 392 (450)
T 3bc8_A 314 SGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHD-KAVTQLGSMLFTRQVSGARAVPLGN 392 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSS-CHHHHHHHHHHHTTCCSCEEECSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeeccccccccc-CCCceeEEEecCCCCccceeeeccc
Confidence 2233333333334444444443 34665543221 0011122322111001 1344555555333 2333331
Q ss_pred -----CC---CCCC----CCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHhhc
Q 046900 400 -----GS---SCHC----SEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRERRR 441 (442)
Q Consensus 400 -----g~---~f~~----~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~~~ 441 (442)
|. .|+. ....++-+.++ ..+++++++++++|.+++++.+++.
T Consensus 393 ~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~~~ 447 (450)
T 3bc8_A 393 VQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQ 447 (450)
T ss_dssp EEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 11 1111 12345555443 2389999999999999988776653
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.57 E-value=6.2e-13 Score=132.08 Aligned_cols=308 Identities=14% Similarity=0.145 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc-------CC-CCeEEEcCCCCcChHHhHhhhcC----
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA-------DP-GDALLVPTPYYPGFDRDLRWRTG---- 166 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~-------~~-gd~Vl~~~p~y~~~~~~~~~~~G---- 166 (442)
+....+|+.+.+... .+-+.|++++++++|++.+++... .+ ...|+...-+|.+....+....|
T Consensus 111 ~~~~~lAe~L~~~~p----~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~ 186 (473)
T 4e3q_A 111 DQTVMLSEKLVEVSP----FDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYN 186 (473)
T ss_dssp HHHHHHHHHHHHHSS----CSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGG
T ss_pred HHHHHHHHHHHhhCC----CCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccc
Confidence 444556776665432 345689999999999999987642 12 25788888888764332210111
Q ss_pred -------cEEEEEecCCC---CCCcCC--------HHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCcCC-CHHHHHHHH
Q 046900 167 -------IKIVPIHCDSS---NNFQIT--------PQALEAAYKEAESKDMRVRGVLITNP-SNPLGATI-QRSVLEELL 226 (442)
Q Consensus 167 -------~~v~~v~~~~~---~~~~~d--------~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~~~-~~~~l~~l~ 226 (442)
.....++.... +...-. .+++++.+.+. +.+.-+.++.-| ..-.|.+. +.+-+++|.
T Consensus 187 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~---~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr 263 (473)
T 4e3q_A 187 SVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQRE---GADTIAGFFAEPVMGAGGVIPPAKGYFQAIL 263 (473)
T ss_dssp GGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHH---CGGGEEEEEECSSBSTTTSBCCCTTHHHHHH
T ss_pred cccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhh---CCCceEEEEeCCccCCCCceeCCHHHHHHHH
Confidence 11222222110 000001 23455555432 222234455555 55567654 556799999
Q ss_pred HHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH--
Q 046900 227 DFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR-- 303 (442)
Q Consensus 227 ~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~-- 303 (442)
++|++||+++|.||+...|...+..+ ....+.- .+.+ -+++|.++ .| +.+|.+++ .+++.+.+..
T Consensus 264 ~lc~~~gilLI~DEV~tGfGRtG~~f-a~e~~gv------~PDi---~t~~K~l~-gG~~Pl~av~~-~~~i~~~~~~~~ 331 (473)
T 4e3q_A 264 PILRKYDIPVISDEVICGFGRTGNTW-GCVTYDF------TPDA---IISSKNLT-AGFFPMGAVIL-GPELSKRLETAI 331 (473)
T ss_dssp HHHHHTTCCEEEECTTTSSSTTSSSC-HHHHTTC------CCSE---EEECGGGG-TTSSCCEEEEE-CHHHHHHHHHHH
T ss_pred HHhcccceEEeccCccccCCcccchh-HHHhcCC------CCCh---HHhccccc-CCCCCcccccc-cHHHHHHhcccc
Confidence 99999999999999999876555432 1111111 1222 36789998 66 89999999 5677665532
Q ss_pred -------ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCceEEEEEecCC
Q 046900 304 -------MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA----GIECLKGNAGLFCWMNLSP 372 (442)
Q Consensus 304 -------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~ 372 (442)
....+..++++.+++.+.|+..+ + +...++.++.-+++.+.|+++ .+.-.. .-|+++-+++..
T Consensus 332 ~~~~~~~hg~T~~Gnpla~Aaala~L~~i~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vR-G~Gl~~gielv~ 405 (473)
T 4e3q_A 332 EAIEEFPHGFTASGHPVGCAIALKAIDVVM--N---EGLAENVRRLAPRFEERLKHIAERPNIGEYR-GIGFMWALEAVK 405 (473)
T ss_dssp HHHSCCCCCCTTTTCHHHHHHHHHHHHHHH--H---SSHHHHHHHHHHHHHHHHHHHTTSTTEEEEE-EETTEEEEEECS
T ss_pred ccccccccCCCCCCCcchhhhhhhhhhhhc--c---ccHHHHHHHHHHHHHHHHHHHhcCCCeeEEe-ecceEEEEEEec
Confidence 12234556777777666665211 1 112223333334444444432 222122 334566666532
Q ss_pred cccc-----cChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 373 LLEE-----QTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 373 ~~~~-----~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
.... ........+...++++ ||++.|. ...+|++.. .++++++++++++|.+++++...
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~-------g~~i~l~PPL~it~~eid~~~~~l~~al~~v~a 470 (473)
T 4e3q_A 406 DKASKTPFDGNLSVSERIANTCTDL-GLICRPL-------GQSVVLCPPFILTEAQMDEMFDKLEKALDKVFA 470 (473)
T ss_dssp BTTTTBCCCGGGCHHHHHHHHHHHT-TEECEEE-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccccHHHHHHHHHHHHHC-CcEEEec-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2110 0111256778888777 9999873 146888865 45899999999999999987643
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=145.19 Aligned_cols=231 Identities=11% Similarity=0.090 Sum_probs=137.3
Q ss_pred HHHHHHHHHHH--hcCCceeEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHh
Q 046900 185 QALEAAYKEAE--SKDMRVRGVLITNP-SNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILE 260 (442)
Q Consensus 185 ~~l~~~l~~~~--~~~~~~~~v~l~~P-~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~ 260 (442)
+.|++.+++.. ....++.+|++..- ++..|... +.+.+++|.++|++||+++|+||++..+...|..+ ....+.-
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~f-a~e~~gv 655 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVET-TTELLGC 655 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSS-THHHHSS
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCch-hhHhcCC
Confidence 45666664311 11235555555432 68888755 77789999999999999999999999876666544 2222211
Q ss_pred hhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHH--------ccccCCCcHHHHHHHHHHhc---CchhH
Q 046900 261 ARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARR--------MSSFTLISSQTQYLLASMLS---NKKFT 328 (442)
Q Consensus 261 ~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~--------~~~~~~~s~~~q~~~~~~l~---~~~~~ 328 (442)
...+ .++||.++ .| +++|++++ ++.+.+.+.. ....+..++++++++.+.|+ +.++
T Consensus 656 ------~PDi---itlsK~L~-gG~~Plgav~~-~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l- 723 (831)
T 4a0g_A 656 ------KPDI---ACFAKLLT-GGMVPLAVTLA-TDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPET- 723 (831)
T ss_dssp ------CCSE---EEECGGGG-TTSSCCEEEEE-CHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTT-
T ss_pred ------CCcE---EEEecccc-cCccCcEEEEE-CHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHH-
Confidence 1222 37999998 67 79999999 6777766543 11224567787777766664 2221
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhCC-CeeecCCceEEEEEecCCccccc--ChhhHHHHHHHHHHcCcEEEeCCCCCC
Q 046900 329 ENYIKTNRERLQKR-YQMIIEGLRSAG-IECLKGNAGLFCWMNLSPLLEEQ--TREGELALWDSMLHEVKLNISPGSSCH 404 (442)
Q Consensus 329 ~~~~~~~~~~~~~~-~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~gi~v~pg~~f~ 404 (442)
.+.+.++.+.+++. ++.+.+.+.+.. +.... ..|+++.+++....... ....+.+++..|+++ ||.+.|+
T Consensus 724 ~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gv~v~p~---- 797 (831)
T 4a0g_A 724 NHNITSQGKTLRELWDEELVQQISSHSAVQRVV-VIGTLFALELKADASNSGYASLYAKSLLIMLRED-GIFTRPL---- 797 (831)
T ss_dssp CTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEE-EETTEEEEEEC---------CHHHHHHHHHHHHT-TEECCCB----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEe-ecccEEEEEEecCccccccchHHHHHHHHHHHHC-CcEEEec----
Confidence 11111111111110 122344455543 33333 34557777764321000 112356788888776 9999984
Q ss_pred CCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 405 CSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 405 ~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
...+|++.. .++++++++++++|.+++++.
T Consensus 798 ---g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 798 ---GNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp ---TTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred ---CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 257999854 348999999999999988654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=83.12 E-value=5.3 Score=35.90 Aligned_cols=100 Identities=15% Similarity=0.187 Sum_probs=60.6
Q ss_pred cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCce
Q 046900 122 RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (442)
-++||.|++..=..+...|.+.|-.|++..-.-......++. .|.+...+..|- -|.+++++.+++..++-.+.
T Consensus 31 valVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~-~g~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~G~i 104 (273)
T 4fgs_A 31 IAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAE-IGGGAVGIQADS-----ANLAELDRLYEKVKAEAGRI 104 (273)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HCTTCEEEECCT-----TCHHHHHHHHHHHHHHHSCE
T ss_pred EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-cCCCeEEEEecC-----CCHHHHHHHHHHHHHHcCCC
Confidence 355555544433456678889998888765443334444553 677777777664 36778887777655444456
Q ss_pred eEEEEeCC-CCCCCc--CCCHHHHHHHHHH
Q 046900 202 RGVLITNP-SNPLGA--TIQRSVLEELLDF 228 (442)
Q Consensus 202 ~~v~l~~P-~NPtG~--~~~~~~l~~l~~~ 228 (442)
.. +++|. .++.+. -++.++++++.++
T Consensus 105 Di-LVNNAG~~~~~~~~~~~~e~w~~~~~v 133 (273)
T 4fgs_A 105 DV-LFVNAGGGSMLPLGEVTEEQYDDTFDR 133 (273)
T ss_dssp EE-EEECCCCCCCCCTTSCCHHHHHHHHHH
T ss_pred CE-EEECCCCCCCCChhhccHHHHHHHHHH
Confidence 64 45554 333332 3577778877764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 442 | ||||
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-110 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-107 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 3e-57 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 6e-57 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 1e-55 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 4e-38 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 6e-37 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 4e-34 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 3e-31 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 3e-30 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 5e-28 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 4e-27 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 1e-26 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 1e-25 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 2e-24 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 4e-22 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 5e-22 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 7e-22 | |
| d1bw0a_ | 412 | c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try | 2e-19 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 9e-15 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 3e-13 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 2e-12 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 9e-10 | |
| d1fg7a_ | 354 | c.67.1.1 (A:) Histidinol-phosphate aminotransferas | 1e-04 | |
| d1lc5a_ | 355 | c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxyl | 2e-04 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 4e-04 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 6e-04 | |
| d2e7ja1 | 364 | c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase ( | 7e-04 | |
| d2aeua1 | 366 | c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar | 0.001 |
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 330 bits (846), Expect = e-110
Identities = 255/428 (59%), Positives = 332/428 (77%), Gaps = 5/428 (1%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LS+ A +HG+DS YF GW+ Y++NPY E N +G+IQMGLAENQ+ FDLLE +L + P
Sbjct: 2 LSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKNP 61
Query: 74 EASTWGK-GAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA 132
EA+ + K G F E ALFQDYHGL +F++AM FM +IRG + FD N +V+TAGAT+A
Sbjct: 62 EAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSA 121
Query: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYK 192
NE F LADPG+A+L+PTPYYPGFDRDL+WRTG++IVPIHC SSN FQIT ALE AY+
Sbjct: 122 NETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQ 181
Query: 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252
EAE +++RV+GVL+TNPSNPLG T+ R+ L LL F K IHL+SDEIYSG+AFSS F
Sbjct: 182 EAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSF 241
Query: 253 VSIAEILEAR----QYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT 308
+S+ E+L+ R + +RVH+VYSLSKDLGLPGFRVG IYS +D VV A +MSSF
Sbjct: 242 ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG 301
Query: 309 LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWM 368
L+SSQTQ+LL++MLS+KK T+NYI N +RL++R + ++ GL+ +GI CL GNAGLFCW+
Sbjct: 302 LVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWV 361
Query: 369 NLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALK 428
++ LL T E E+ LW +++EV LNISPGSSCHC+EPGWFRVCFAN+ E+TL++A++
Sbjct: 362 DMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQ 421
Query: 429 RIHNFMQK 436
R+ F+ +
Sbjct: 422 RLKAFVGE 429
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 323 bits (827), Expect = e-107
Identities = 241/426 (56%), Positives = 328/426 (76%), Gaps = 2/426 (0%)
Query: 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQP 73
LSK+A +E HGE+SPYF GWKAYD +P+ NP+GVIQMGLAENQ+ DL+E+++++ P
Sbjct: 2 LSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRNP 61
Query: 74 EASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAAN 133
+ S +G F+ A FQDYHGL FR+A+A FME+ RGGR +FD R+V+ GAT AN
Sbjct: 62 KGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGAN 121
Query: 134 ELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKE 193
E + F LADPGDA LVP+PYYP F+RDLRWRTG++++PIHC+SSNNF+IT +A++ AY+
Sbjct: 122 ETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYEN 181
Query: 194 AESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253
A+ +++V+G+++TNPSNPLG T+ + L+ +L F + NIHLV DEIY+ + F + +FV
Sbjct: 182 AQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFV 241
Query: 254 SIAEILEARQ--YKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLIS 311
SIAEIL+ ++ Y + + VHIVYSLSKD+GLPGFRVG IYS+ND VV AR+MSSF L+S
Sbjct: 242 SIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVS 301
Query: 312 SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLS 371
+QTQY LA+MLS++KF +N+++ + RL KR++ GL GI+CLK NAGLFCWM+L
Sbjct: 302 TQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLR 361
Query: 372 PLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIH 431
PLL E T + E++LW ++++VKLN+SPGSS C EPGWFRVCFANM + T+++AL RI
Sbjct: 362 PLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIR 421
Query: 432 NFMQKR 437
F+
Sbjct: 422 RFVGVE 427
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 191 bits (485), Expect = 3e-57
Identities = 57/345 (16%), Positives = 139/345 (40%), Gaps = 24/345 (6%)
Query: 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVP 150
+ G R+A+A +++ + + I+VT G + L + +PGD +++P
Sbjct: 63 YGPAAGEPRLREAIAQKLQRDN--GLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIP 120
Query: 151 TPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPS 210
P++ + ++ G V + F+++P+ + A + + ++ PS
Sbjct: 121 APFWVSYPEMVKLAEG-TPVILPTTVETQFKVSPEQIRQAITP------KTKLLVFNTPS 173
Query: 211 NPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERV 270
NP G + + A + ++SDEIY + ++ +SI + ER
Sbjct: 174 NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASP----EAYERS 229
Query: 271 HIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTEN 330
+ +K + G+RVG + V + T + ++ + +++
Sbjct: 230 VVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVC--TFAQYGAIAAYENSQD 287
Query: 331 YIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSM 389
++ +R + +++ L + G+EC K + + + +++ T L +
Sbjct: 288 CVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAK-----TGRSSLDFCSEL 342
Query: 390 LHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434
L + ++ PG++ R+ +A T++ ++R+ F+
Sbjct: 343 LDQHQVATVPGAAFGA--DDCIRLSYAT-DLDTIKRGMERLEKFL 384
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 190 bits (483), Expect = 6e-57
Identities = 70/342 (20%), Positives = 144/342 (42%), Gaps = 19/342 (5%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
GL R+A+A +++ G A I+V GA A + G+ +L+PTP +
Sbjct: 63 GLLELREAIAEKLKKQNGIEADPKTE-IMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFV 121
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA 215
+ + G K V + + F++ L+ + + R ++I +P NP GA
Sbjct: 122 SYAPAVIL-AGGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALIINSPCNPTGA 174
Query: 216 TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275
+ + LEE+ DF ++ ++SDE+Y + + SIA + ER V
Sbjct: 175 VLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMF-----ERTITVNG 229
Query: 276 LSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTN 335
SK + G+R+G + + + + + A+ + + ++
Sbjct: 230 FSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEM 289
Query: 336 RERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKL 395
R+ +R +++ + L G+ +K + + + T + ML E ++
Sbjct: 290 RKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRD-----TGLTSKKFSELMLKEARV 344
Query: 396 NISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437
+ PGS+ + G+ R+ +A + + LE A+ R+ +++R
Sbjct: 345 AVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLKER 385
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 187 bits (475), Expect = 1e-55
Identities = 78/343 (22%), Positives = 145/343 (42%), Gaps = 27/343 (7%)
Query: 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTP 152
G+ R+A+A + +VT G + A L + DPGD ++V +P
Sbjct: 66 PPAGIPELREALAEKFRREN--GLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSP 123
Query: 153 YYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP 212
Y+ + +R+ G +V + F P+ + A R + +++ +P+NP
Sbjct: 124 YWVSYPEMVRFAGG-VVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNP 176
Query: 213 LGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHI 272
GA + VLE L A + +LVSDEIY + F E
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGR--------VAPEHTLT 228
Query: 273 VYSLSKDLGLPGFRVGTIYSYNDKVVTTAR-RMSSFTLISSQTQYLLASMLSNKKFTENY 331
V +K + G+R+G + + A S T + Q+ L+N++ + +
Sbjct: 229 VNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAF 288
Query: 332 IKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLH 391
++ RE ++R +++EGL + G++ ++ + + M+ SP+ ++ R E L
Sbjct: 289 VEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPDEVRAAERLL------ 342
Query: 392 EVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434
E + + PG+ G R+ +A SE+ L AL+R +
Sbjct: 343 EAGVAVVPGTDFAA--FGHVRLSYAT-SEENLRKALERFARVL 382
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 140 bits (353), Expect = 4e-38
Identities = 82/354 (23%), Positives = 138/354 (38%), Gaps = 31/354 (8%)
Query: 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVP 150
+ D GL R+A+ ++ G D R+ T A +L+ L DPGD +LVP
Sbjct: 66 YGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAV--TEALQLIFGALLDPGDEILVP 123
Query: 151 TPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPS 210
P YP + L G K V ++Q + R + + + NP+
Sbjct: 124 GPSYPPY-TGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKI------TDRTKAIAVINPN 176
Query: 211 NPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERV 270
NP GA + LEE+L+ A I ++SDEIY + + V
Sbjct: 177 NPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGS-------LTKDVPV 229
Query: 271 HIVYSLSKDLGLPGFRVGTIYSYN-----DKVVTTARRMSSFTL-ISSQTQYLLASMLSN 324
++ LSK G+R+G +Y + +V R++ L ++ Q+ + L+
Sbjct: 230 IVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTG 289
Query: 325 KKFTENYIKTNRERLQKRYQMIIEGLRSAG-IECLKGNAGLFCWMNLSPLLEEQTREGEL 383
+Y+K ++L++R I + L I K + + + E + +
Sbjct: 290 ---PMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKI----EVGPWKNDK 342
Query: 384 ALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437
+LH + GS G FR F + LE A+ R FM++R
Sbjct: 343 EFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMDRFEKFMKER 395
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 137 bits (347), Expect = 6e-37
Identities = 55/410 (13%), Positives = 112/410 (27%), Gaps = 86/410 (20%)
Query: 63 DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFM-----EQIRG---- 113
LEEY +Q EAS L +H + F +++F+ + I+
Sbjct: 67 LFLEEYWKQHKEASAV-----------LVSPWHRMSYFFNPVSNFISFELEKTIKELHEV 115
Query: 114 -GRAKFDLNRIVVTAGATAANELLTFILAD--------PGDALLVPTPYYPGFDRDLRWR 164
G A IV G T L L+ P ++ P+YP F
Sbjct: 116 VGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVF------- 168
Query: 165 TGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEE 224
+ + ++T+P+NP G
Sbjct: 169 --REQTKYFDKKGYVWAGNAANYVNVSNP------EQYIEMVTSPNNPEGLL-------- 212
Query: 225 LLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284
R + IY + + I ++ +++++SK G G
Sbjct: 213 ------RHAVIKGCKSIYDM-VYYWPHYTPIKY--------KADEDILLFTMSKFTGHSG 257
Query: 285 FRVGTIYSYNDKVVTTARRMSSFTLI--SSQTQYLLASMLSN--------KKFTENYIKT 334
R G ++ V + +TQ +L K +
Sbjct: 258 SRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTF 317
Query: 335 NRERLQKRYQMIIEGLRSAGIECL----KGNAGLFCWMNLSP---LLEEQTREGELALWD 387
++L++R+ I L + + + P + E
Sbjct: 318 GFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCY 377
Query: 388 SMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437
++N G + R+ ++ + + + + ++ +
Sbjct: 378 QTFQNGRINTQNGVGFEA-SSRYVRLSLIK-TQDDFDQLMYYLKDMVKAK 425
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 130 bits (326), Expect = 4e-34
Identities = 55/363 (15%), Positives = 108/363 (29%), Gaps = 49/363 (13%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-------ADPGDALL 148
GL FR + + V + G T A + L + +
Sbjct: 75 GLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVY 134
Query: 149 VPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITN 208
V +P + + I + + Q + + VL
Sbjct: 135 VSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN---APEFSIFVLHAC 191
Query: 209 PSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSE 268
NP G +++ R+ + D Y G A + E + A +
Sbjct: 192 AHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEG---F 248
Query: 269 RVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQT--------QYLLAS 320
+ S SK+ GL RVG + + + R +S I T ++A
Sbjct: 249 ELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVAR 308
Query: 321 MLSNKKFTE---NYIKTNRERLQKRYQMIIEGLRSAGIEC----LKGNAGLFCWMNLSPL 373
LS+ + +KT +R+ + L + + G+F + L+P
Sbjct: 309 TLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNP- 367
Query: 374 LEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNF 433
+Q ++++ + + P R+ ++ + L+ IH
Sbjct: 368 --KQVEY--------LINQKHIYLLPSG----------RINMCGLTTKNLDYVATSIHEA 407
Query: 434 MQK 436
+ K
Sbjct: 408 VTK 410
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 121 bits (303), Expect = 3e-31
Identities = 74/342 (21%), Positives = 142/342 (41%), Gaps = 31/342 (9%)
Query: 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTP 152
D G+ R+ + + +++VVT GA A L DPGD ++V +P
Sbjct: 63 DPRGIYELREGI--AKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSP 120
Query: 153 YYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP 212
+ G + + S NFQ + + +E + + VLI +P+NP
Sbjct: 121 VWV-SYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAVLINSPNNP 173
Query: 213 LGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHI 272
G +R LE L+ A ++N +++SDE+Y ++ + + +R+
Sbjct: 174 TGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSIL------DVSEGFDRIVY 227
Query: 273 VYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYI 332
+ SK + G+RVG + S ++ S T + + K E
Sbjct: 228 INGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVA-----QYAALKALEVDN 282
Query: 333 KTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHE 392
+ ++R ++E L+ G++ ++ + + + R ++ + +L E
Sbjct: 283 SYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKV--------RGDDVKFCERLLEE 334
Query: 393 VKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434
K+ + PGS+ +PG+ R+ FA S + L AL RI +F+
Sbjct: 335 KKVALVPGSAFL--KPGFVRLSFAT-SIERLTEALDRIEDFL 373
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 118 bits (297), Expect = 3e-30
Identities = 62/353 (17%), Positives = 103/353 (29%), Gaps = 46/353 (13%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPY 153
G+ F + + R T G T A + LA + V P
Sbjct: 70 GIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPS 129
Query: 154 YPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPL 213
+P G+++ + N + AL + EA + NP
Sbjct: 130 WPNHKSVFNSA-GLEVREYAYYDAENHTLDFDALINSLNEA---QAGDVVLFHGCCHNPT 185
Query: 214 GATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIV 273
G + L + K + D Y G A E A + + +
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAA----MHKELIVA 241
Query: 274 YSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLI--------SSQTQYLLASMLSNK 325
S SK+ GL RVG T R S + ++A++LSN
Sbjct: 242 SSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSND 301
Query: 326 KFT---ENYIKTNRERLQKRYQMIIEGLRSAGIEC----LKGNAGLFCWMNLSPLLEEQT 378
E + R+R+Q+ Q+ + L+ G + G+F + L+ EQ
Sbjct: 302 ALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK---EQV 358
Query: 379 REGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIH 431
+ E + RV A M+ + + I
Sbjct: 359 --------LRLREEFGVYAVASG----------RVNVAGMTPDNMAPLCEAIV 393
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 112 bits (281), Expect = 5e-28
Identities = 53/362 (14%), Positives = 108/362 (29%), Gaps = 46/362 (12%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILAD--PGDALLVPTPY 153
GL S A + + + D V + T A + + P + + P
Sbjct: 74 GLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPT 133
Query: 154 YPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPL 213
+ + G+K ++ + A ++ VL + NP
Sbjct: 134 WANHMAIFENQ-GLKTATYPYWANETKSLDLNGFLNAIQK---APEGSIFVLHSCAHNPT 189
Query: 214 GATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIV 273
G +++D KN + D Y G A + + A L + V +
Sbjct: 190 GLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVC 249
Query: 274 YSLSKDLGLPGFRVGTIYSYNDKVVTTARRM------------SSFTLISSQTQYLLASM 321
S +K+ G+ G RVG + K S + + ++A +
Sbjct: 250 QSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKL 309
Query: 322 LSN---KKFTENYIKTNRERLQKRYQMIIEGLRSAGI----ECLKGNAGLFCWMNLSPLL 374
L + + T R+ K + + L G + + G+F + L+P
Sbjct: 310 LETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTP-- 367
Query: 375 EEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434
+ + + + + R A +++ +E K I +
Sbjct: 368 -QMVKR--------LEETHAVYLVASG----------RASIAGLNQGNVEYVAKAIDEVV 408
Query: 435 QK 436
+
Sbjct: 409 RF 410
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 110 bits (274), Expect = 4e-27
Identities = 53/353 (15%), Positives = 104/353 (29%), Gaps = 46/353 (13%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATA--ANELLTFILADPGDALLVPTPY 153
GL +R A+A + K + T G + P + V P
Sbjct: 71 GLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPT 130
Query: 154 YPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPL 213
+ G ++ + L A K R +L NP
Sbjct: 131 WENHVAIFAG-AGFEVSTYPWYDEATNGVRFNDLLATLKTL---PARSIVLLHPCCHNPT 186
Query: 214 GATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIV 273
GA + + +++ + + D Y G E + +
Sbjct: 187 GADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIA----SAGLPALVS 242
Query: 274 YSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS--------SFTLISSQTQYLLASMLSNK 325
S SK L G RVG + + R + +++ + ++A++L+++
Sbjct: 243 NSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDE 302
Query: 326 KFTE---NYIKTNRERLQKRYQMIIEGLRSAGIE----CLKGNAGLFCWMNLSPLLEEQT 378
++ R R+ Q +++ L + E L G+F + LS
Sbjct: 303 ALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSA------ 356
Query: 379 REGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIH 431
A D + E + + R+C A ++ ++ K
Sbjct: 357 -----AQVDRLREEFGVYLIASG----------RMCVAGLNTANVQRVAKAFA 394
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (270), Expect = 1e-26
Identities = 58/363 (15%), Positives = 117/363 (32%), Gaps = 27/363 (7%)
Query: 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTP 152
G + +ASF ++ G ++VT G A L D GD +++ P
Sbjct: 62 KTFGYPPLTKILASFFGELLGQEIDPL-RNVLVTVGGYGALFTAFQALVDEGDEVIIIEP 120
Query: 153 YYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMR---VRGVLITNP 209
++ ++ G + + E + +++ P
Sbjct: 121 FFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTP 180
Query: 210 SNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSER 269
+NPLG R LE + + ++ ++DE+Y + + +SIA + ER
Sbjct: 181 NNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMW-----ER 235
Query: 270 VHIVYSLSKDLGLPGFRVGTIYSYN-----DKVVTTARRMSSFTLISSQTQYLLASMLSN 324
+ S K G++VG + + + V T +
Sbjct: 236 TLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLL 295
Query: 325 KKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTR----- 379
+ +Y + +Q+ +I L+S G++ L F ++S +
Sbjct: 296 FRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAV 355
Query: 380 --EGELALWDSMLHEVKLNISPGSSCHCSE-----PGWFRVCFANMSEQTLEVALKRIHN 432
+ M+ L P S + + R CF E TL+ +++
Sbjct: 356 DEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLRK 414
Query: 433 FMQ 435
+
Sbjct: 415 WKV 417
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 105 bits (262), Expect = 1e-25
Identities = 49/354 (13%), Positives = 101/354 (28%), Gaps = 46/354 (12%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL---ADPGDALLVPTP 152
GL F +A A K V T + + L + +P P
Sbjct: 72 GLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKP 131
Query: 153 YYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP 212
+ + G+++ + + + +L NP
Sbjct: 132 SWGNH-TPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISK---IPEKSIILLHACAHNP 187
Query: 213 LGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHI 272
G ++ +EL ++N+ D Y G A + A + V +
Sbjct: 188 TGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWA---LRHFIEQGIDVVL 244
Query: 273 VYSLSKDLGLPGFRVGTIY--------SYNDKVVTTARRMSSFTLISSQTQYLLASMLSN 324
S +K++GL G R G + + ++ + + +L+
Sbjct: 245 SQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNT 304
Query: 325 KKFT---ENYIKTNRERLQKRYQMIIEGLRSAGIEC----LKGNAGLFCWMNLSPLLEEQ 377
+ +K +R+ ++ L+ G + G+FC+ L P EQ
Sbjct: 305 PELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKP---EQ 361
Query: 378 TREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIH 431
+ E + ++ R+ A ++ + IH
Sbjct: 362 VER--------LTKEFSIYMTKDG----------RISVAGVASSNVGYLAHAIH 397
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 102 bits (253), Expect = 2e-24
Identities = 67/353 (18%), Positives = 131/353 (37%), Gaps = 24/353 (6%)
Query: 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTP 152
G R A+A +ME+ I+ AG+ A +L+ + +PGD ++V P
Sbjct: 69 TTKGFTPLRLALARWMEKRYD--IPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAP 126
Query: 153 YYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP 212
Y + ++ + + I D + ++ + V V
Sbjct: 127 TYLAAIQAFKYYD-PEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPA- 184
Query: 213 LGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHI 272
G T+ ++LL+ A + +V D YS +S I + + D RV
Sbjct: 185 -GVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPI------KHFDDYGRVIY 237
Query: 273 VYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYI 332
+ + SK L PGFR+G + ++ + S L ++ +A + + +I
Sbjct: 238 LGTFSKILA-PGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHI 296
Query: 333 KTNRERLQKRYQMIIEGLR---SAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSM 389
E + R ++E L G+E K G+F + L ++ + L
Sbjct: 297 PKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGIDTK-------LMMER 349
Query: 390 LHEVKLNISPGS--SCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRERR 440
+ PG H + R+ F + E+T+ ++R+ +++ +R
Sbjct: 350 AVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEMKR 402
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 95.5 bits (236), Expect = 4e-22
Identities = 51/351 (14%), Positives = 114/351 (32%), Gaps = 45/351 (12%)
Query: 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYP 155
G F++AM + G +++ V L +A+P + V P +P
Sbjct: 70 GEPEFQKAMGELILG-DGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWP 128
Query: 156 GFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA 215
+ + G+ + + + + ++A A +L NP GA
Sbjct: 129 NHVSIMNFM-GLPVQTYRYFDAETRGVDFEGMKADLAAA---KKGDMVLLHGCCHNPTGA 184
Query: 216 TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYS 275
+ E+ + + D Y G E + ++ V I S
Sbjct: 185 NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIA----SRIPEVLIAAS 240
Query: 276 LSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQT--------QYLLASMLSNKKF 327
SK+ G+ R G + + T + ++ QT +++++L+ +
Sbjct: 241 CSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPEL 300
Query: 328 TE---NYIKTNRERLQKRYQMIIEGLRSAGIEC----LKGNAGLFCWMNLSPLLEEQTRE 380
++ R + + + + LR + + G+F + +P EQ +
Sbjct: 301 RADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATP---EQVKR 357
Query: 381 GELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIH 431
+ E + + S R+ A +++ T+ + + I
Sbjct: 358 --------IKEEFGIYMVGDS----------RINIAGLNDNTIPILARAII 390
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 95.6 bits (236), Expect = 5e-22
Identities = 63/359 (17%), Positives = 122/359 (33%), Gaps = 24/359 (6%)
Query: 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTP 152
G QA++ Q+ ++VT GA A D GD +++ P
Sbjct: 64 RGFGHPRLVQALSKLYSQLVDRTINPM-TEVLVTVGAYEALYATIQGHVDEGDEVIIIEP 122
Query: 153 YYPGFDRDLRWRTGIKI-VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSN 211
++ ++ ++ GI +P+ + + + + + + + + ++I P N
Sbjct: 123 FFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHN 182
Query: 212 PLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVH 271
PLG + R+ LE + + + N+ VSDE+Y F E + I + +
Sbjct: 183 PLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWER-----TI 237
Query: 272 IVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT-----LISSQTQYLLASMLSNKK 326
+ S K L G+++G Y + + I + L K
Sbjct: 238 TIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLK 297
Query: 327 FTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPL------LEEQTRE 380
E Y + L + + L G+ G F + S L +E
Sbjct: 298 SPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDAR 357
Query: 381 GELALWDSMLHEVKLNISPGSSCHCSEP-----GWFRVCFANMSEQTLEVALKRIHNFM 434
+ M V L P S+ + + R CF ++ L+ A + + +
Sbjct: 358 KDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK-KDENLQKAAEILRKWK 415
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 94.4 bits (233), Expect = 7e-22
Identities = 75/344 (21%), Positives = 130/344 (37%), Gaps = 36/344 (10%)
Query: 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTP 152
GL + R+A+A + +VVT+GAT A +L L PGD ++V P
Sbjct: 59 PPAGLPALREALAEEF--------AVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEP 110
Query: 153 YYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP 212
++ + D + + F++ ALE A R R +L+ P NP
Sbjct: 111 FFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP------RTRALLLNTPMNP 164
Query: 213 LGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHI 272
G LE + A ++ L+SDE+Y + + E + ER
Sbjct: 165 TGLVFGERELEAIARLARAHDLFLISDEVY--------DELYYGERPRRLREFAPERTFT 216
Query: 273 VYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYI 332
V S K L G+RVG I + + A + + + E +
Sbjct: 217 VGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFY 276
Query: 333 KTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHE 392
+ RE ++R ++ GLR+ G+ F L + ++ E
Sbjct: 277 EALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWDAFR-----------LVEE 325
Query: 393 VKLNISPGSSCHCSEP--GWFRVCFANMSEQTLEVALKRIHNFM 434
++ + P S+ + +P FR F +E+ L +AL+R+ +
Sbjct: 326 ARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVV 368
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Score = 88.0 bits (216), Expect = 2e-19
Identities = 68/408 (16%), Positives = 154/408 (37%), Gaps = 27/408 (6%)
Query: 39 NPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLK 98
+ + S +P +I++ + + + +L K A +E + G
Sbjct: 21 DNAKPSPSPKPIIKLSVGDPTLDKNL-----LTSAAQIKKLKEAIDSQECNGYFPTVGSP 75
Query: 99 SFRQAMASFMEQIRGGRAKFDL----NRIVVTAGATAANELLTFILADPGDALLVPTPYY 154
R+A+A++ + + + +V+ +G + + + D GD LVP P +
Sbjct: 76 EAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGF 135
Query: 155 PGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLG 214
P + GI + +C N+++ + D + + +++TNPSNP G
Sbjct: 136 P-HYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLK------DDKTKLLIVTNPSNPCG 188
Query: 215 ATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVY 274
+ R +E+++ A + L SDEIY+G F + + ++ + I+
Sbjct: 189 SNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNAT--FTSVADFETTVPRVILG 246
Query: 275 SLSKDLGLPGFRVGTIYSYNDKVVT-----TARRMSSFTLISSQTQYLLASMLSNKKFTE 329
+K+L +PG+R+G + + +R+ E
Sbjct: 247 GTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQE 306
Query: 330 NYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSM 389
+ + + + + G+ ++ + L + + + ++ ++ +
Sbjct: 307 HLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRI-DLEKYRDIKTDVEFFEKL 365
Query: 390 LHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437
L E + + PG+ H PG+ R+ + A++RI F Q+
Sbjct: 366 LEEENVQVLPGTIFHA--PGFTRLTTTR-PVEVYREAVERIKAFCQRH 410
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 73.2 bits (178), Expect = 9e-15
Identities = 69/340 (20%), Positives = 122/340 (35%), Gaps = 23/340 (6%)
Query: 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTP 152
G+++ R+A+A E++ G + D + I VTAGAT A L GD ++ P
Sbjct: 61 PMTGVQALREAIAQKTERLYGYQPDAD-SDITVTAGATEALYAAITALVRNGDEVICFDP 119
Query: 153 YYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP 212
Y + IV +F++ Q A R R V++ P NP
Sbjct: 120 SYDSYAP--AIALSGGIVKRMALQPPHFRVDWQEFAALL------SERTRLVILNTPHNP 171
Query: 213 LGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHI 272
Q++ L I ++SDE+Y FS S+ + ER
Sbjct: 172 SATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLA-----HPQLRERAVA 226
Query: 273 VYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYI 332
V S K + G++VG + + R L S ++ + +
Sbjct: 227 VSSFGKTYHMTGWKVGYCVAPAPI--SAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHY 284
Query: 333 KTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHE 392
+ +++ +++ L + +E L F ++ S + + ++ + E
Sbjct: 285 LALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAV----STLDDVEFCQWLTQE 340
Query: 393 VKLNISPGSSCHCSEPG--WFRVCFANMSEQTLEVALKRI 430
+ P S R+CFA E TL A +R+
Sbjct: 341 HGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERL 379
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 68.6 bits (166), Expect = 3e-13
Identities = 58/357 (16%), Positives = 127/357 (35%), Gaps = 23/357 (6%)
Query: 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTP 152
G +Q + +E++ G D + ++ T G+ A +L+ + D ++ P
Sbjct: 78 TTEGDPVLKQQILKLLERMYGITG-LDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDP 136
Query: 153 YYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNP 212
Y G R +V D + + + L K + K ++ V ++N NP
Sbjct: 137 AYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYV-VSNFHNP 195
Query: 213 LGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHI 272
G T + L++ A + ++ +V D+ Y + +
Sbjct: 196 AGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDP-------IFKIGGPERVV 248
Query: 273 VYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYI 332
+ + + PG R+G + + + + S L S + LA+ + +
Sbjct: 249 LLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQL 308
Query: 333 KTNRERLQKRYQMIIEGLRSA-----GIECLKGNAGLFCWMNLSPLLEEQTREGELALWD 387
K E +++ +++ L G++ +K GLF W+ L E E+
Sbjct: 309 KPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLP----EGFDTWEMF--- 361
Query: 388 SMLHEVKLNISPGSSCHCSE--PGWFRVCFANMSEQTLEVALKRIHNFMQKRERRRN 442
K+ PG + R+ F ++ + +KR+ + + + ++
Sbjct: 362 EYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGKEKH 418
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 66.0 bits (159), Expect = 2e-12
Identities = 55/352 (15%), Positives = 119/352 (33%), Gaps = 19/352 (5%)
Query: 87 ENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDA 146
+ + + +++ + +M+ + I+ TAG A PGD
Sbjct: 58 DETVLGYTGPTEEYKKTVKKWMKDRHQWD--IQTDWIINTAGVVPAVFNAVREFTKPGDG 115
Query: 147 LLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206
+++ TP Y F ++ + I + + I Q LE K D + +L
Sbjct: 116 VIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSK-----DKNNKALLF 170
Query: 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKD 266
+P NP+G ++ L+++ D + ++ L SDEI+ E I +
Sbjct: 171 CSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSI----DEQL 226
Query: 267 SERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKK 326
+++ + SK + G + I N + + T T + K
Sbjct: 227 ADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYK 286
Query: 327 FTE--NYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELA 384
+R + I+ W++ L + A
Sbjct: 287 ECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRAL-----KMDHKA 341
Query: 385 LWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436
+ + M+H+ ++ G G+ R+ A ++ +L+R++ ++
Sbjct: 342 MEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALKD 392
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 57.6 bits (137), Expect = 9e-10
Identities = 45/341 (13%), Positives = 102/341 (29%), Gaps = 23/341 (6%)
Query: 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD 158
F A+A + D +V L ++ G+ +++ TP Y F
Sbjct: 39 EFLAAIAHWFSTQHY--TAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFY 96
Query: 159 RDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQ 218
+ + + ++ + LEA + E K M + ++
Sbjct: 97 KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELE 156
Query: 219 RSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSK 278
+ + D ++ ++ S SK
Sbjct: 157 IMADLCERHGVRVISDEIHMDMVWGEQPHIP------------WSNVARGDWALLTSGSK 204
Query: 279 DLGLPGFRVG-TIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRE 337
+P I + + +SS + L + ++ + ++ R
Sbjct: 205 SFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRI 264
Query: 338 RLQKRYQMIIEGLRSA--GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKL 395
L+ I + + +A + + W++L PL + AL +++ + K+
Sbjct: 265 YLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPL-----NIDDNALQKALIEQEKV 319
Query: 396 NISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436
I PG + G+ R+ LE + + N ++
Sbjct: 320 AIMPGYTYGEEGRGFVRLNAG-CPRSKLEKGVAGLINAIRA 359
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 19/162 (11%), Positives = 51/162 (31%), Gaps = 14/162 (8%)
Query: 271 HIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTEN 330
I+ +LSK L G R G + + + + ++ + L + ++
Sbjct: 205 AILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMR 264
Query: 331 YIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSML 390
++ ++ + +E + + + + A++ S+
Sbjct: 265 ERVAQIIAEREYLIAALKEI--PCVEQVFDSETNYILARF---------KASSAVFKSLW 313
Query: 391 HEVKLNISPGSSCHCSEPGWFRVCFANMSE-QTLEVALKRIH 431
+ + + + S G R+ E Q + AL+
Sbjct: 314 DQ-GIILRDQNK-QPSLSGCLRITVGTREESQRVIDALRAEQ 353
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 10/102 (9%), Positives = 36/102 (35%), Gaps = 10/102 (9%)
Query: 330 NYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSM 389
+ + L++ + L + + + + ++ L +
Sbjct: 262 AWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLLRCE--------REDIDLQRRL 313
Query: 390 LHEVKLNISPGSSCHCSEPGWFRVCFANMSE-QTLEVALKRI 430
L + ++ I ++ + ++RV + ++ + L AL+ +
Sbjct: 314 LTQ-RILIRSCANYPGLDSRYYRVAIRSAAQNERLLAALRNV 354
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 40.3 bits (93), Expect = 4e-04
Identities = 41/316 (12%), Positives = 93/316 (29%), Gaps = 30/316 (9%)
Query: 115 RAKFDLNRIVVTAGATAANELLTFILADPGDALL------VPTPYYPGFDRDLRWRTGIK 168
+ F+ + I+ A +L +L + ++ G K
Sbjct: 85 KELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCK 144
Query: 169 IVPIHCDSSNNFQ--------ITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRS 220
+ I + + + + + L+ + + ++ +T S G + S
Sbjct: 145 AINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSA-GGQPVSMS 203
Query: 221 VLEELLDFATRKNIHLVSDEIYSGSA-------FSSSEFVSIAEILEARQYKDSERVHIV 273
L+E+ + A + I +V D + +I E++ D +
Sbjct: 204 NLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVI-----FDMYKYADA 258
Query: 274 YSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIK 333
++S G + +++ + T R + T LA
Sbjct: 259 LTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG 318
Query: 334 TNRERLQKR---YQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSML 390
T E L R + + + LR AGI G +++ L+ + + A
Sbjct: 319 TEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINA 378
Query: 391 HEVKLNISPGSSCHCS 406
++ +
Sbjct: 379 LYLESGVRAVEIGSFL 394
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 39.8 bits (92), Expect = 6e-04
Identities = 51/358 (14%), Positives = 100/358 (27%), Gaps = 42/358 (11%)
Query: 118 FDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD-- 175
F IV T A LL+ + PG + + R + + G V I D
Sbjct: 88 FGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTT--RFHQEKNGATFVDIVRDEA 145
Query: 176 ------SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLG-ATIQRSVLEELLDF 228
I L KE ++++ + + N G + + + + +
Sbjct: 146 HDASLNLPFKGDIDLNKLATLIKEKGAENIAY--ICLAVTVNLAGGQPVSMANMRAVHEM 203
Query: 229 ATRKNIHLVSD--EIYSGSAFSSSEFVSIAEILEARQYKDSERV--HIVYSLSKDLGLPG 284
A+ I + D + F + + + S KD +
Sbjct: 204 ASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI 263
Query: 285 FRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKR-- 342
G ND+ + +A + + LA E ++ R
Sbjct: 264 ---GGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVK 320
Query: 343 -YQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLE----EQTREGELALWDSMLHEVKLNI 397
+ + + LR AG+ ++ G +++ +Q LA + E +
Sbjct: 321 QVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAAS--IYMETGVRS 378
Query: 398 SPGSSC-----------HCSEPGWFRVCFA--NMSEQTLEVALKRIHNFMQKRERRRN 442
H + R+ + ++V I Q +E R
Sbjct: 379 MERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRG 436
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 39.4 bits (90), Expect = 7e-04
Identities = 40/319 (12%), Positives = 97/319 (30%), Gaps = 24/319 (7%)
Query: 122 RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQ 181
VT GA A + LA +++ + + I + ++
Sbjct: 64 VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAG-LNIALVPKTDYPDYA 122
Query: 182 ITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEI 241
ITP+ +E + + V LIT P G + ++ + + I
Sbjct: 123 ITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAI 181
Query: 242 YSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTA 301
+ S + ++ + ++ R Y
Sbjct: 182 GRMPVSLKEIGADFIVGSGHKSMAASGPIGVMG-MKEEWAEIVLRRSEKYKN------KE 234
Query: 302 RRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN 361
+ T + L+AS ++ + + + ++ + + GI+ L N
Sbjct: 235 VELLGCTARGATIITLMASFPHVRERIKRW-----DEEVEKARRFAAEMEKLGIKQLGDN 289
Query: 362 ----AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFAN 417
+F + + ++ + G L+ + I PG + +F++
Sbjct: 290 PHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLT------RYFKLSTYG 343
Query: 418 MSEQTLEVALKRIHNFMQK 436
+S++ ++ L ++K
Sbjct: 344 LSDEEVDYVLNAFKEIIEK 362
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 38.3 bits (88), Expect = 0.001
Identities = 33/335 (9%), Positives = 86/335 (25%), Gaps = 35/335 (10%)
Query: 105 ASFMEQIRGGRAKF----DLNRIVVTAGATAANELLTFILADPGDALLVP-TPYYPGFDR 159
+ F E++ K + ++ V ++A L +P P +P +R
Sbjct: 49 SYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGHPSIER 108
Query: 160 DLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQR 219
+ K + + ++ + + I+
Sbjct: 109 SCKIV-NAKYFESDK---------VGEILNKIDK------DTLVIITGSTMDL--KVIEL 150
Query: 220 SVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKD 279
+++++ A K + D+ G+ A L A S +
Sbjct: 151 ENFKKVINTAKNKEAIVFVDDAS-GARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGL 209
Query: 280 LGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERL 339
L V IY K A+ + + + L + +K E
Sbjct: 210 LAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERI---RKAFERAKN-FDLSK 265
Query: 340 QKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISP 399
++ ++ + + F + + + + ++L +
Sbjct: 266 IEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDD-TINIKKLIEIGFNLLKNYGIITIT 324
Query: 400 GSSCHCSEPGWFRVCFA-----NMSEQTLEVALKR 429
+ R+ + + + A+
Sbjct: 325 VAG-MPGASKSLRIDLTSRDAERIDDNYIIKAIVE 358
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 442 | |||
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.96 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.96 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.93 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.93 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.93 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.93 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.92 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.91 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.87 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.85 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.85 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.84 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.84 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.84 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.82 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.81 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.8 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.8 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.78 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.78 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.78 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.76 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.75 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.75 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.75 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.74 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.74 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.73 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.71 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.71 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.7 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.7 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.69 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.69 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.69 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.69 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.69 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.69 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.68 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.68 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.66 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.63 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.63 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.63 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.62 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.62 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.61 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.6 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.58 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.57 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.53 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.52 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.47 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.4 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.22 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.06 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.04 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.98 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 98.88 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 80.93 |
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=1.5e-70 Score=543.92 Aligned_cols=425 Identities=57% Similarity=1.063 Sum_probs=376.9
Q ss_pred ccchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccC
Q 046900 13 GLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQ 92 (442)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 92 (442)
++||++.+..||++|+++.+|+.+..++|++..||.|+|+|+++||.++++.+.+++.+.+......++...+....+|+
T Consensus 1 ~~~~~~~~~~~~~~s~y~~g~~~~~~~~~~~~~np~G~i~l~~aen~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 80 (428)
T d1iaya_ 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQ 80 (428)
T ss_dssp CCCTTGGGC-----CCTTHHHHHHHHSBCCSSSSTTSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCC
T ss_pred CcccccccCCCCCCChhhHhHHHhccCCCCCcCCCCceEEeecccCccchHHHHHHHHhCCchhhhHhHhhhCHHhccCc
Confidence 58999999999999999999999999999999999999999999999999999999998876554433444445567899
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEE
Q 046900 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPI 172 (442)
Q Consensus 93 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v 172 (442)
++.|.++||++||+|++++++..+.+++++|++|+|+++++..++.+++++||.|++++|+|+.+...+....|++++++
T Consensus 81 ~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v 160 (428)
T d1iaya_ 81 DYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPI 160 (428)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEe
Confidence 99999999999999999999877778999999999999999999999999999999999999999887765469999999
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+++.+++|.+|++.++.++......+.++++++++|||||||.+++.+++++|+++|++|+++||+||+|+++.|++..+
T Consensus 161 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~ 240 (428)
T d1iaya_ 161 HCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQF 240 (428)
T ss_dssp CCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCC
T ss_pred ecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccc
Confidence 99988899999999999888777777889999999999999999999999999999999999999999999999998888
Q ss_pred ccHHHHHhhhc--CCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHH
Q 046900 253 VSIAEILEARQ--YKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTEN 330 (442)
Q Consensus 253 ~s~~~~~~~~~--~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~ 330 (442)
.++.++..... ....+++++++||||.|+++|+|+||++++++.+.+.++....+..++.+.|.++++.+.+..+.++
T Consensus 241 ~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~ 320 (428)
T d1iaya_ 241 VSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDN 320 (428)
T ss_dssp CCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHHH
T ss_pred cccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhhcccccccccccchhhhhhhhccccc
Confidence 88888765321 2345789999999999999999999999988888888888777777888999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCE
Q 046900 331 YIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGW 410 (442)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~ 410 (442)
++++.++.++++++.+.+.|+..|+++.+|+||||+|++++........+++.++++.|++++||.+.||+.|+..+++|
T Consensus 321 ~~~~~~~~l~~r~~~~~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~ 400 (428)
T d1iaya_ 321 FLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGW 400 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSE
T ss_pred cccccccccchhHHHHHHHHHhCCCEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCE
Confidence 99999999999999999999999999999999999999998876666666788999999998999999999999888899
Q ss_pred EEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 411 FRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 411 iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
|||||+..++++++++++||++++..+
T Consensus 401 ~Ris~a~~~~~~l~~al~Rl~~~l~~~ 427 (428)
T d1iaya_ 401 FRVCFANMDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp EEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence 999998757888999999999998653
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=6e-70 Score=539.99 Aligned_cols=424 Identities=60% Similarity=1.064 Sum_probs=373.0
Q ss_pred cchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCceeeeecccccccHHHHHHHHHhCCCCcccC-CCCCCCCcccccC
Q 046900 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSFDLLEEYLEQQPEASTWG-KGAPGFRENALFQ 92 (442)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Y~ 92 (442)
+|+|+.--.||.+||++.+|+.+.+++|++..||.|+|+|+++||.++.+.+++++...+...... .+.........|+
T Consensus 2 ~~~~~~~~~~~~~s~y~~g~~~~~~~~~~~~~np~G~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~ 81 (431)
T d1m7ya_ 2 LSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQ 81 (431)
T ss_dssp CCSTTC-------CHHHHHHHHHHHSBCCSSSCTTSBEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCC
T ss_pred cchhhcccCCccCCchhhhhhhhhcCCCCCcCCCCcEEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCc
Confidence 689999778999999999999999999999999999999999999999999999998876543222 2222223456799
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEE
Q 046900 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPI 172 (442)
Q Consensus 93 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v 172 (442)
++.|.++||++||+|++++++.++++++++|++|+|+++++..++.+|++|||.|+++.|+|+.+...+..+.|++++++
T Consensus 82 ~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v 161 (431)
T d1m7ya_ 82 DYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPI 161 (431)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEE
T ss_pred CCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccc
Confidence 99999999999999999998877888999999999999999999999999999999999999999888875578999999
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+++++++|.+|++.+++.+.+....+.++++++++|||||||.+++.+++++|+++|++++++||+||+|+++.|++..+
T Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~ 241 (431)
T d1m7ya_ 162 HCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSF 241 (431)
T ss_dssp ECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCC
T ss_pred cccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCC
Confidence 99988899999999999999888788889999999999999999999999999999999999999999999999998888
Q ss_pred ccHHHHHhhhcC----CCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhH
Q 046900 253 VSIAEILEARQY----KDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFT 328 (442)
Q Consensus 253 ~s~~~~~~~~~~----~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~ 328 (442)
.++.++..+... ...+++++++||||.||++|+|+||++++++.+...+........+++..|.++++.+.+..+.
T Consensus 242 ~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~ 321 (431)
T d1m7ya_ 242 ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLT 321 (431)
T ss_dssp CCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHH
T ss_pred CCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHHhccccccccccchhhhhhccchhh
Confidence 898887654211 1236899999999999999999999999887777777777777778888888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCC
Q 046900 329 ENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEP 408 (442)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~ 408 (442)
++++.++++.++++++.+.+.|++.|+++.+|+||||+|++++........+++.+++++|++++||.+.||+.|+...+
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~ 401 (431)
T d1m7ya_ 322 KNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEP 401 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSST
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcCCcEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCC
Confidence 88999999999999999999999999999999999999999998776666777889999999999999999999998888
Q ss_pred CEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 409 GWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 409 ~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+|+||+|+..++++++++++||+++++++
T Consensus 402 ~~~Ri~~a~~~e~~l~~al~rL~~~l~~~ 430 (431)
T d1m7ya_ 402 GWFRVCFANLPERTLDLAMQRLKAFVGEY 430 (431)
T ss_dssp TEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCcCCHHHHHHHHHHHHHHHHHh
Confidence 99999998767889999999999999886
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.5e-59 Score=459.39 Aligned_cols=359 Identities=22% Similarity=0.376 Sum_probs=306.9
Q ss_pred CceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 48 SGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 48 ~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
+++|+|+++++.++. +.+.+.+.+.... ...+|++..|.++||++||+|+++.++. ...++++|++|
T Consensus 25 ~dvi~l~~g~p~~~~p~~v~~~~~~a~~~-----------~~~~Y~~~~G~~~lr~aia~~~~~~~~~-~~~~~~~i~~t 92 (388)
T d1gdea_ 25 KDVISLGIGEPDFDTPQHIKEYAKEALDK-----------GLTHYGPNIGLLELREAIAEKLKKQNGI-EADPKTEIMVL 92 (388)
T ss_dssp TTCEECCCCSCCSCCCHHHHHHHHHHHHT-----------TCCSCCCTTCCHHHHHHHHHHHHHHHCC-CCCTTTSEEEE
T ss_pred CCeEECCCCCCCCCCCHHHHHHHHHHHhc-----------CccCCCCCcCCHHHHHHHHHHHHhhccc-cCCChheeeec
Confidence 478999999987753 5666665544321 2357999999999999999999887663 23567789999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+|+++++..++.+|+++||.|++++|+|+.|...++. .|++++.+|++++++|.+|+++|++.+++ +++++++
T Consensus 93 ~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~~ 165 (388)
T d1gdea_ 93 LGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVIL-AGGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALII 165 (388)
T ss_dssp SSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHH-HTCEEEEEECCGGGTTCCCHHHHHHHCCT------TEEEEEE
T ss_pred cCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHH-cCCEEEEeecccccCCCCCHHHHHHhCcc------CCeEEEE
Confidence 9999999999999999999999999999999999985 99999999998888999999999998764 7899999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
+|||||||.+++.+++++|+++|++|+++||+||+|+++.+++..+.++.++... .+++|+++||||.||+||+|
T Consensus 166 ~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~-----~~~~i~~~S~SK~~~~~GlR 240 (388)
T d1gdea_ 166 NSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGM-----FERTITVNGFSKTFAMTGWR 240 (388)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTC-----GGGEEEEEESTTTTTCGGGC
T ss_pred CCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCC-----CCeEEEEeCChhhccCcccc
Confidence 9999999999999999999999999999999999999999887777776665432 47899999999999999999
Q ss_pred eEEEeecCHHHHHHHHHc--cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceE
Q 046900 287 VGTIYSYNDKVVTTARRM--SSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGL 364 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~ 364 (442)
+||++++ +.+...+... ......+.+.|.++..++.++.+ .+++...++.++++++.+.+.|...++.+..|+||+
T Consensus 241 ~G~ii~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~ 318 (388)
T d1gdea_ 241 LGFVAAP-SWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAF 318 (388)
T ss_dssp CEEEECC-HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTT
T ss_pred EEEEEee-ccchhhhhhccccccccccccchhhHHHHHhhccc-hhHHHHHHHHHHHhhhhhhhhhhhccccccCCCceE
Confidence 9999995 4444444332 22355678899999999998765 667788889999999999999999999999999999
Q ss_pred EEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 365 FCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
|+|+++++... ++.+++++|++++||.+.||+.|+..+++|+|||++. +++++++++++|++++++++
T Consensus 319 fl~~~l~~~~~-----~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~-~~e~l~~al~rL~~~l~e~k 386 (388)
T d1gdea_ 319 YIFPRIRDTGL-----TSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLKERK 386 (388)
T ss_dssp EECCBCGGGTC-----CHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCC-----CHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHhcC
Confidence 99999975321 3678899999888999999999987778999999997 88999999999999998764
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.6e-59 Score=457.96 Aligned_cols=378 Identities=22% Similarity=0.389 Sum_probs=308.7
Q ss_pred cccchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccc
Q 046900 12 VGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENAL 90 (442)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (442)
.++|+|..+. .+|+...--+.. + ....++.++|+|+++++.++. +.+.+.+.+... ....+
T Consensus 2 ~~~~~r~~~~---~~s~~~~i~~~a-~---~~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~-----------~~~~~ 63 (382)
T d1b5pa_ 2 RGLSRRVQAM---KPSATVAVNAKA-L---ELRRQGVDLVALTAGEPDFDTPEHVKEAARRALA-----------QGKTK 63 (382)
T ss_dssp CCCCHHHHHC---CCCHHHHHHHHH-H---HHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHH-----------TTCCS
T ss_pred hHHHHHHHhC---CCCHHHHHHHHH-H---HHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHh-----------cCCcC
Confidence 3678888776 344333111111 1 112335679999999987753 555555554321 12457
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEE
Q 046900 91 FQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIV 170 (442)
Q Consensus 91 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~ 170 (442)
|+++.|+++||+++++|+.+.++ ..+++++|++|+|+++++..++.+++++||.|++++|+|+.|...++. .|++++
T Consensus 64 Y~~~~G~~~lR~~ia~~~~~~~~--~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~-~g~~~~ 140 (382)
T d1b5pa_ 64 YAPPAGIPELREALAEKFRRENG--LSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRF-AGGVVV 140 (382)
T ss_dssp CCCTTCCHHHHHHHHHHHHHTTC--CCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHH-TTCEEE
T ss_pred CCCCCCCHHHHHHHHhhhhhhcc--cccccccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHHH-hcCeEE
Confidence 99999999999999999998876 568899999999999999999999999999999999999999999985 999999
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
.++++++++|.+|++.+++.+.+ +++++++||||||||.+++.+++++|+++|++|+++||+||+|+++.|++.
T Consensus 141 ~v~~~~~~~~~~d~~~l~~~~~~------~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~ 214 (382)
T d1b5pa_ 141 EVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE 214 (382)
T ss_dssp EEECCGGGTTCCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC
T ss_pred EEecccccccCCCHHHHHHhCCC------CCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCC
Confidence 99998888899999999988754 789999999999999999999999999999999999999999999999876
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhH
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFT 328 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~ 328 (442)
.+.+.. . ..+++++++||||.|++||+|+||++++ +.+.+.+.+... ....+.+.|.++...+......
T Consensus 215 ~~~~~~-~-------~~~~~i~~~s~SK~~~~~GlR~G~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (382)
T d1b5pa_ 215 HFSPGR-V-------APEHTLTVNGAAKAFAMTGWRIGYACGP-KEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEAS 285 (382)
T ss_dssp CCCGGG-T-------CTTTEEEEEESTTTTTCGGGCCEEEECC-HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHH
T ss_pred CCCHHH-c-------CCCCEEEEecchhhccCcHhheEEEEEC-HHHHHHHHHHHHhcccCcccccccccccccccccch
Confidence 554422 2 2478999999999999999999999995 555555443322 3456778888888888776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCC
Q 046900 329 ENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEP 408 (442)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~ 408 (442)
..++...++.++++++.+.+.+.+.|+++..|+||||+|++++.... +...+++.|+++ ||.+.||+.|+. +
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~gg~~~~~~~~~~~~-----~~~~~~~~l~e~-gV~v~PG~~F~~--~ 357 (382)
T d1b5pa_ 286 RAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAP-----DEVRAAERLLEA-GVAVVPGTDFAA--F 357 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBTTEEEEECTTTCS-----SHHHHHHHHHHT-TEECEESGGGTC--T
T ss_pred hHHHHHHHHHHHhhhhHHHHHHhhcCCeEecCCceEEEeEeCCCCCC-----CHHHHHHHHHHC-CEEEEeCcccCC--C
Confidence 78888899999999999999999989999999999999999975422 356677777665 999999999974 5
Q ss_pred CEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 409 GWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 409 ~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
+|+||+++. ++|+++++++||++++
T Consensus 358 ~~iRis~~~-~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 358 GHVRLSYAT-SEENLRKALERFARVL 382 (382)
T ss_dssp TEEEEECCS-CHHHHHHHHHHGGGGC
T ss_pred CeEEEEEcC-CHHHHHHHHHHHHHhC
Confidence 799999997 8999999999998763
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=2.9e-59 Score=456.69 Aligned_cols=355 Identities=18% Similarity=0.358 Sum_probs=303.3
Q ss_pred CCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEE
Q 046900 47 PSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVV 125 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 125 (442)
..++|||+++++.++. +.+.+.+.+..+. ...+|+++.|.++||+++|+|+.+.+| ..+++++|++
T Consensus 29 g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~-----------~~~~Y~~~~G~~~lR~aia~~~~~~~g--~~~~~~~i~i 95 (388)
T d1j32a_ 29 GIDVCSFSAGEPDFNTPKHIVEAAKAALEQ-----------GKTRYGPAAGEPRLREAIAQKLQRDNG--LCYGADNILV 95 (388)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHT-----------TCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCCeEECCCCCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCHHHHHHHHHHHHHhcc--cCCCCceEEE
Confidence 3578999999987753 5556655544321 245799999999999999999999887 5588999999
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
|+|+++++..++.+++++||.|++++|+|+.|...++. .|.+++.++++.+++|.+|++++++.+++ ++++++
T Consensus 96 t~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~-~~~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~~~~~ 168 (388)
T d1j32a_ 96 TNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKL-AEGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLV 168 (388)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHH-TTCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEEE
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHH-hcCeEEEEecccccccCCCHHHHHHhCCC------CCeEEE
Confidence 99999999999999999999999999999999999985 89999999998888899999999998764 789999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
++|||||||.+++.+++++|+++|++++++||+||+|+++.+++..+.++....+. ..+++++++||||.|++||+
T Consensus 169 ~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~----~~~~~i~~~S~SK~~~~~Gl 244 (388)
T d1j32a_ 169 FNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPE----AYERSVVCSGFAKTYAMTGW 244 (388)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHH----HHHTEEEEEESTTTTTCTTT
T ss_pred ECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcc----cccceeEecCChhhhhcchh
Confidence 99999999999999999999999999999999999999999988777776554332 13689999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCc
Q 046900 286 RVGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNA 362 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 362 (442)
|+||++++ +.+.+.+.+.. .....+...|.++...+... ++++++.++.++++++.+.+.|++. |+.+..|+|
T Consensus 245 RvG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~g 320 (388)
T d1j32a_ 245 RVGFLAGP-VPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDG 320 (388)
T ss_dssp CCEEEECC-HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCB
T ss_pred HeEEEEEC-HHHHHHHHHhhhhccccccHHHHHHHhhcccch---HHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCCc
Confidence 99999995 55555544433 23567788998888887754 3578889999999999999999987 899999999
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
|||+|++++.... ++.+++++|++++||.+.||+.|+. ++|+||+++. +++++++++++|+++++.+
T Consensus 321 g~~l~~~l~~~~~-----~~~~~~~~ll~~~gV~v~pG~~F~~--~~~~Rls~~~-~~e~l~~al~rl~~~l~~l 387 (388)
T d1j32a_ 321 AFYMFPSIAKTGR-----SSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYAT-DLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp TTEECCBCGGGTC-----CHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCC-----CHHHHHHHHHHhCCEEEEeccccCC--CCeEEEEEeC-CHHHHHHHHHHHHHHHHHh
Confidence 9999999876422 3678899998888999999999974 6899999997 8999999999999999864
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.1e-57 Score=443.34 Aligned_cols=383 Identities=23% Similarity=0.337 Sum_probs=307.2
Q ss_pred ccccchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCceeeeecccc---ccc-HHHHHHHHHhCCCCcccCCCCCCCC
Q 046900 11 SVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAEN---QVS-FDLLEEYLEQQPEASTWGKGAPGFR 86 (442)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (442)
|++.|||.... ++. ++ ......+. ....+.++|+|+++++ .++ ++.+.+.+.+....
T Consensus 1 ~~~~s~r~~~~---~~~-ir-~i~~~a~~---l~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~----------- 61 (395)
T d1xi9a_ 1 SIRASKRALSV---EYA-IR-DVVLPARE---LEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKE----------- 61 (395)
T ss_dssp CCCCCHHHHTC---CC---------CHHH---HHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHT-----------
T ss_pred CccchhccccC---cHH-HH-HHHHHHHH---HHHCCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhc-----------
Confidence 56788998876 222 11 11011111 1122457999999875 343 35556555544311
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcC
Q 046900 87 ENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTG 166 (442)
Q Consensus 87 ~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G 166 (442)
...+|+++.|+++||++||+|+++++| +.+++++|++|+|+++++.+++.+++++||.|++++|+|+.|...++. .|
T Consensus 62 ~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~-~g 138 (395)
T d1xi9a_ 62 GHNYYGDSEGLPELRKAIVEREKRKNG--VDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKF-YG 138 (395)
T ss_dssp TCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHH-TT
T ss_pred CCCCCCCCCCCHHHHHHHHHhhhhccc--ccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccccchhhhhh-cC
Confidence 235799999999999999999999987 567899999999999999999999999999999999999999999995 99
Q ss_pred cEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCC
Q 046900 167 IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSA 246 (442)
Q Consensus 167 ~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~ 246 (442)
++++.+++..+++|.+|++.+++.+.+ ++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.
T Consensus 139 ~~~v~v~~~~~~~~~~d~~~~~~~~~~------~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~ 212 (395)
T d1xi9a_ 139 GKPVEYRTIEEEDWQPDIDDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMT 212 (395)
T ss_dssp CEEEEEEEEGGGTSEECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCB
T ss_pred CEEEEEeccccccccchHHHHHHhhcc------cccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEecccccccc
Confidence 999999988888899999999988764 88999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCH-----HHHHHHHHcc-ccCCCcHHHHHHHHH
Q 046900 247 FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYND-----KVVTTARRMS-SFTLISSQTQYLLAS 320 (442)
Q Consensus 247 ~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~-----~~~~~~~~~~-~~~~~s~~~q~~~~~ 320 (442)
|++. ..+...+.. .++||+++||||.|++||+|+||++++++ .+.+...... ..+..+.++|.++..
T Consensus 213 ~~~~-~~~~~~~~~------~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~ 285 (395)
T d1xi9a_ 213 YEGE-HISPGSLTK------DVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIA 285 (395)
T ss_dssp SSSC-CCCHHHHCS------SSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHH
T ss_pred cccc-ccchhhcCC------CCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHH
Confidence 8764 445555443 47899999999999999999999876432 2222222222 235567889999888
Q ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeC
Q 046900 321 MLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAG-IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISP 399 (442)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~p 399 (442)
++.+. ++|+++.++.++++++.+.+.|.+.+ +.+..|+||+|+|++++..... ++.+++.++++++||.+.|
T Consensus 286 ~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg~~~~~~l~~~~~~----~~~~~~~~ll~~~gV~v~P 358 (395)
T d1xi9a_ 286 GLTGP---MDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPWK----NDKEFVLDVLHNAHVLFVH 358 (395)
T ss_dssp HHHSC---CHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSCS----SHHHHHHHHHHHHCEECEE
T ss_pred HhcCC---HHHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCeeEEEeEECCCCCCC----CHHHHHHHHHHhCCEEEEc
Confidence 88754 34688899999999999999999884 6778899999999999864221 3677888888888999999
Q ss_pred CCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 400 GSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 400 g~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
|+.|+..+++|+||+++. ++|++++++++|++++++
T Consensus 359 G~~Fg~~~~~~~Ris~~~-~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 359 GSGFGEYGAGHFRAVFLP-PIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp GGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred ChhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 999987678999999987 899999999999999875
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=2.3e-56 Score=439.98 Aligned_cols=393 Identities=18% Similarity=0.316 Sum_probs=308.1
Q ss_pred cccchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCceeeeeccccccc-----HHHHHHHHHhCCCCcccCCCCCCCC
Q 046900 12 VGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVS-----FDLLEEYLEQQPEASTWGKGAPGFR 86 (442)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (442)
+.+|.++... ++ +++.+... ..+..++.++|+|+++++.++ .+.+.+.+.+.... .
T Consensus 3 ~~~~~~~~~~----~~----pir~~~~~-~~~~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~----------~ 63 (412)
T d1bw0a_ 3 VSMSNHAGLV----FN----PIRTVSDN-AKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDS----------Q 63 (412)
T ss_dssp CCCCHHHHTC----CC----HHHHHHHT-CCCCCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHT----------T
T ss_pred CChhhcccCC----cc----HHHHHHHh-cCCCCCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhC----------C
Confidence 4677776554 33 34454333 355667789999999987543 23333333332111 1
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHhCC----CCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHh
Q 046900 87 ENALFQDYHGLKSFRQAMASFMEQIRGG----RAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLR 162 (442)
Q Consensus 87 ~~~~Y~~~~g~~~lr~~ia~~l~~~~~~----~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~ 162 (442)
...+|++..|+++||++||+|++++++. +..+++++|++|+|+++++..++.+|+++||.|++++|+|+.|...++
T Consensus 64 ~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~ 143 (412)
T d1bw0a_ 64 ECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCK 143 (412)
T ss_dssp CSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhccccceeeeeccchhhhhhhh
Confidence 3467999999999999999999988642 245789999999999999999999999999999999999999999998
Q ss_pred hhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccC
Q 046900 163 WRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIY 242 (442)
Q Consensus 163 ~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y 242 (442)
. .|++++.+|++++++|.++++.+++.+.+ ++++++++|||||||.+++.+++++|+++|++|+++||+||+|
T Consensus 144 ~-~G~~~~~v~~~~~~~~~~~~~~l~~~~~~------~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y 216 (412)
T d1bw0a_ 144 A-YGIGMHFYNCRPENDWEADLDEIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIY 216 (412)
T ss_dssp H-TTCEEEEEEEEGGGTTEECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred c-cCccccccccccccccchhhHHHHhhhhc------cccccccccccccccccchhhhccccccccccCCeeeechhhH
Confidence 5 99999999999888999999999987654 8899999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCH-----HHHHHHHHccc-cCCCcHHHHH
Q 046900 243 SGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYND-----KVVTTARRMSS-FTLISSQTQY 316 (442)
Q Consensus 243 ~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~-----~~~~~~~~~~~-~~~~s~~~q~ 316 (442)
.++.|++..+.+....... .....++++++||||.++++|+|+||++++++ .+.....+... ....+++.|.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (412)
T d1bw0a_ 217 AGMVFKGKDPNATFTSVAD--FETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQA 294 (412)
T ss_dssp TTCBCCSSCTTCCCCCTTS--SCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred HHhccCCCCCccccccccc--cccccccccccccCccCccCCCCcccccccchhhcchhhhhhhccccccccCCchhhhh
Confidence 9999987543332211111 12246788999999999999999999998643 22222222222 2344556666
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcE
Q 046900 317 LLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKL 395 (442)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi 395 (442)
++...+.... ++++.++++.++++|+.+.+.|.+. |+.+..|+||||+|++++.... ....++.+++++|++++||
T Consensus 295 ~~~~~~~~~~--~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~-~~~~~~~~~~~~ll~~~gV 371 (412)
T d1bw0a_ 295 ALGEALLNTP--QEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKY-RDIKTDVEFFEKLLEEENV 371 (412)
T ss_dssp HHHHHHHSSC--HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGB-SSCCSHHHHHHHHHHHHCE
T ss_pred hccccccccc--ccccccccchhHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhhc-CCCCCHHHHHHHHHHhCCE
Confidence 6555554432 5688899999999999999999775 8999999999999999874221 1222478899999998899
Q ss_pred EEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 396 NISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 396 ~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
.+.||+.|+ .++|+|||++. ++++++++++||+++++++.
T Consensus 372 ~v~PG~~Fg--~~g~iRis~~~-~~e~l~eal~Rl~~~l~~~~ 411 (412)
T d1bw0a_ 372 QVLPGTIFH--APGFTRLTTTR-PVEVYREAVERIKAFCQRHA 411 (412)
T ss_dssp ECEEGGGGT--CTTEEEEECCS-CHHHHHHHHHHHHHHHHHHB
T ss_pred EEEeccccC--CCCeEEEEEcC-CHHHHHHHHHHHHHHHHhcC
Confidence 999999997 46899999987 89999999999999998874
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=4.9e-55 Score=431.07 Aligned_cols=363 Identities=19% Similarity=0.282 Sum_probs=297.4
Q ss_pred ceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC-CcEEEe
Q 046900 49 GVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL-NRIVVT 126 (442)
Q Consensus 49 ~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-~~i~~t 126 (442)
++|||+.+++.++. +.+.+.+.+...... ....+|++..|+++||++||+|+.+++| ..+++ ++|++|
T Consensus 27 ~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~--------~~~~~Y~~~~G~~~lReaiA~~~~~~~g--~~~~p~~~I~it 96 (418)
T d2r5ea1 27 KPLNLGQGFPDYHAPKYALNALAAAANSPD--------PLANQYTRGFGHPRLVQALSKLYSQLVD--RTINPMTEVLVT 96 (418)
T ss_dssp CCEECSSSCCSSCCCHHHHHHHHHHHTCSC--------GGGGSCCCTTCCHHHHHHHHHHHHHHHT--SCCCTTTSEEEE
T ss_pred CCEEccCCCCCCCCCHHHHHHHHHHHhCCC--------ccCcCCCCCCCCHHHHHHHHHHHHHHhC--CCCCccceEEEc
Confidence 67999999887643 556665554432110 1245799999999999999999999887 45664 789999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCC--------CCcCCHHHHHHHHHHHHhcC
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSN--------NFQITPQALEAAYKEAESKD 198 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~--------~~~~d~~~l~~~l~~~~~~~ 198 (442)
+|+++++.+++++++++||.|++++|+|+.|...+.. .|.+++.++++.++ .|..+.+.+.+....
T Consensus 97 ~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 170 (418)
T d2r5ea1 97 VGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKA-AGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE----- 170 (418)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-TTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCT-----
T ss_pred CCCchhhhhhhhhccccccceeccccccchhhHHHHH-cCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhc-----
Confidence 9999999999999999999999999999999999995 99999999986543 366778888776543
Q ss_pred CceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcc
Q 046900 199 MRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSK 278 (442)
Q Consensus 199 ~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK 278 (442)
++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++....++..+... .+++++++|+||
T Consensus 171 -~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~-----~~~~i~~~S~SK 244 (418)
T d2r5ea1 171 -KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGM-----WERTITIGSAGK 244 (418)
T ss_dssp -TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTT-----GGGEEEEEEHHH
T ss_pred -cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccc-----cceeeeeecCCc
Confidence 88999999999999999999999999999999999999999999999987666666555432 579999999999
Q ss_pred cCCCCCceeEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHHHhcCc----hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046900 279 DLGLPGFRVGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLASMLSNK----KFTENYIKTNRERLQKRYQMIIEGLRS 352 (442)
Q Consensus 279 ~~g~~G~RiG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~l~~~L~~ 352 (442)
.+++||+|+||++++ +.+.+.+.+.. ..+.++++.|.+++.++... ...++|++++++.++++|+.+.+.|++
T Consensus 245 ~~~~pGlRiG~~~~~-~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 323 (418)
T d2r5ea1 245 TFSLTGWKIGWAYGP-EALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAE 323 (418)
T ss_dssp HTTCGGGCCEEEESC-HHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCccccccccc-chhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhh
Confidence 999999999999995 55555554433 23567888888877666432 122467889999999999999999999
Q ss_pred CCCeeecCCceEEEEEecCCccc------ccChhhHHHHHHHHHHcCcEEEeCCCCCCCC-----CCCEEEEEeecCCHH
Q 046900 353 AGIECLKGNAGLFCWMNLSPLLE------EQTREGELALWDSMLHEVKLNISPGSSCHCS-----EPGWFRVCFANMSEQ 421 (442)
Q Consensus 353 ~g~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~-----~~~~iRls~~~~~~e 421 (442)
.|+++..|+||||+|++++.... .....++.++++.|++++||.+.||+.|+.. +++|||||++. ++|
T Consensus 324 ~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~-~~e 402 (418)
T d2r5ea1 324 VGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK-KDE 402 (418)
T ss_dssp TTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCS-CHH
T ss_pred cCCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEecC-CHH
Confidence 99999999999999999875321 1122357899999999889999999999753 24799999987 899
Q ss_pred HHHHHHHHHHHHHH
Q 046900 422 TLEVALKRIHNFMQ 435 (442)
Q Consensus 422 ~i~~~l~~l~~~l~ 435 (442)
++++++++|++++.
T Consensus 403 ~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 403 NLQKAAEILRKWKG 416 (418)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998863
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.8e-54 Score=418.21 Aligned_cols=346 Identities=25% Similarity=0.426 Sum_probs=288.3
Q ss_pred CCCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEE
Q 046900 46 NPSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIV 124 (442)
Q Consensus 46 ~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 124 (442)
++.++|||+++++.+++ +.+.+.+.+... ....+|++..|+++||+++++++.+.++ ..+++++|+
T Consensus 26 ~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~-----------~~~~~Y~~~~G~~~lR~aia~~~~~~~~--~~~~~~~i~ 92 (375)
T d1o4sa_ 26 KGEDVINLTAGEPDFPTPEPVVEEAVRFLQ-----------KGEVKYTDPRGIYELREGIAKRIGERYK--KDISPDQVV 92 (375)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHHHHHT-----------TCCCCCCCTTCCHHHHHHHHHHHHHHHT--CCCCGGGEE
T ss_pred CCCCeEECCCcCCCCCCCHHHHHHHHHHHh-----------cCCcCCCCCcCCHHHHHHHHhhhhhccc--ccccccccc
Confidence 35679999999987743 555555544321 1235799999999999999999998877 567899999
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
+|+|+++++..++.+|+++||.|++++|+|+.|...+.. .|...+.++++++++|.+|.+.++....+ +++++
T Consensus 93 ~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 165 (375)
T d1o4sa_ 93 VTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIIL-AGGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAV 165 (375)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-TTCEEEEEECCGGGTTCCCHHHHHHTCCT------TEEEE
T ss_pred ccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhhc-cccccccccccccccccchhHHHHHhhcc------CccEE
Confidence 999999999999999999999999999999999998885 89999999998888899999988876543 78899
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
+++|||||||.+++.+++++|+++|++|+++||+||+|.++.++.... +...... ..+++++++||||.|++||
T Consensus 166 ~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~-----~~~~~i~~~S~SK~~~l~G 239 (375)
T d1o4sa_ 166 LINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFT-SILDVSE-----GFDRIVYINGFSKSHSMTG 239 (375)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCC-CHHHHCS-----SSTTEEEEEESTTTTTCGG
T ss_pred EEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhcccccccccc-ccccccC-----CCCCEEEEeechhhccCCc
Confidence 999999999999999999999999999999999999999988876544 3333332 3689999999999999999
Q ss_pred ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc
Q 046900 285 FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNA 362 (442)
Q Consensus 285 ~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 362 (442)
+|+||++++ +.+.+.+...... ...+.+.|......+... ....++.++++++.+.+.|++.|+++..|+|
T Consensus 240 ~R~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~l~~~g~~~~~p~g 312 (375)
T d1o4sa_ 240 WRVGYLISS-EKVATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKMGVKFVEPEG 312 (375)
T ss_dssp GCCEEEECC-HHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCSB
T ss_pred ccccccccc-ccchhhhhhhhccccccccccchhhhhhhcccc------hhhhHHHHHHHHHHHHHHHHhcCceEecCCc
Confidence 999999995 5555554433322 445666776666655543 2445678899999999999999999999999
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~ 435 (442)
|||+|++++. ++.+++.++++++||.+.||+.|+ .++|+||+++. +++++++++++|+++++
T Consensus 313 g~f~~~~~~~--------~~~~~~~~ll~~~gV~v~pG~~F~--~~g~iRis~~~-~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 313 AFYLFFKVRG--------DDVKFCERLLEEKKVALVPGSAFL--KPGFVRLSFAT-SIERLTEALDRIEDFLN 374 (375)
T ss_dssp SSEEEEECSS--------CHHHHHHHHHHHHCEECEEGGGGT--CTTEEEEECCS-CHHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCC--------CHHHHHHHHHHhCCEEEEEccccC--CCCeEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence 9999999986 266788888887799999999996 46799999997 89999999999999875
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=8.4e-55 Score=426.11 Aligned_cols=371 Identities=16% Similarity=0.230 Sum_probs=294.9
Q ss_pred hhhhhhcCCCCCCCCCCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHH
Q 046900 32 GWKAYDENPYEESTNPSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQ 110 (442)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~ 110 (442)
.|..+.+.. .....++|+|+++++.++. +.+.+.+.+..+. ...+|+ .|.++||++||+|+++
T Consensus 18 k~~~~~~~~---~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~-----------~~~~Y~--~g~~~Lr~aia~~~~~ 81 (394)
T d1c7na_ 18 KWDLMYSQN---PEVGNEVVPLSVADMEFKNPPELIEGLKKYLDE-----------TVLGYT--GPTEEYKKTVKKWMKD 81 (394)
T ss_dssp HHHHHHHHC---TTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHH-----------CCCSSB--CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---HhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhC-----------CCcCCC--CCCHHHHHHHHHHHHH
Confidence 575554432 2234589999999988763 5566655544321 134575 4678999999999999
Q ss_pred HhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC-CCCCcCCHHHHHH
Q 046900 111 IRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS-SNNFQITPQALEA 189 (442)
Q Consensus 111 ~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~-~~~~~~d~~~l~~ 189 (442)
++| +.+++++|++|+|+++++.+++.++++|||.|++++|.|.++...+.. .|.+.+.++... ++.|.+|.+.++.
T Consensus 82 ~~g--~~~~~~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~d~~~~~~ 158 (394)
T d1c7na_ 82 RHQ--WDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKN-QERKIIECELLEKDGYYTIDFQKLEK 158 (394)
T ss_dssp HHC--CCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHT-TTCEEEECCCEEETTEEECCHHHHHH
T ss_pred hcC--CCCCCcceEeeccchhhhhhhhccccccccccccccCcccchhhHHhh-hhhcccccccccccccccchhhhhhh
Confidence 887 567899999999999999999999999999999999999999998884 899998888643 4567889888887
Q ss_pred HHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCc
Q 046900 190 AYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSER 269 (442)
Q Consensus 190 ~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~ 269 (442)
.+.. .+++++++||||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.+....... ..++
T Consensus 159 ~~~~-----~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~----~~~~ 229 (394)
T d1c7na_ 159 LSKD-----KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQ----LADK 229 (394)
T ss_dssp HHTC-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHH----HHTT
T ss_pred hhcc-----ccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcc----cccc
Confidence 7642 478999999999999999999999999999999999999999999999987655544332222 1378
Q ss_pred EEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccC-CC-cHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 046900 270 VHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT-LI-SSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMII 347 (442)
Q Consensus 270 vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~-~~-s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 347 (442)
++++.|+||.|+++|+|+||++++++.+.+.+.+..... .. +...+.+++..... ...++.++.++.++++++.+.
T Consensus 230 ~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 307 (394)
T d1c7na_ 230 TITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYK--ECGKWLDGCIKVIDKNQRIVK 307 (394)
T ss_dssp EEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHH
T ss_pred eeecccccccccccccccccccccChhhhhhhhhhhhhccccccccccchhhhhhhc--chhhhhcccccccchhhhhhh
Confidence 899999999999999999999998888887776554332 22 22223232222221 225677888889999999999
Q ss_pred HHHHhC--CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHH
Q 046900 348 EGLRSA--GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEV 425 (442)
Q Consensus 348 ~~L~~~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~ 425 (442)
+.++.. ++++..|+||||+|++++.... ++.++++.|++++||.+.||+.|+..+++|+|||++. +++++++
T Consensus 308 ~~l~~~~~~~~~~~p~g~~~~~~~~~~~~~-----~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~-~~e~i~e 381 (394)
T d1c7na_ 308 DFFEVNHPEIKAPLIEGTYLQWIDFRALKM-----DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQE 381 (394)
T ss_dssp HHHHHHCTTSBCCCCSBSSEEEEECGGGCC-----CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHH
T ss_pred hhhhccccceeecCCCceeEEEEECCCCCC-----CHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeC-CHHHHHH
Confidence 988764 6778889999999999986321 3778999999999999999999987678899999987 8899999
Q ss_pred HHHHHHHHHHHHH
Q 046900 426 ALKRIHNFMQKRE 438 (442)
Q Consensus 426 ~l~~l~~~l~~~~ 438 (442)
+++||++++++++
T Consensus 382 al~rl~~~l~~Lk 394 (394)
T d1c7na_ 382 SLERLNKALKDLK 394 (394)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999864
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-54 Score=424.17 Aligned_cols=363 Identities=20% Similarity=0.331 Sum_probs=298.5
Q ss_pred CCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCC-CcEE
Q 046900 47 PSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDL-NRIV 124 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-~~i~ 124 (442)
..++|||+++++.++ ++.+.+.+.+..... ....+|++..|+++||++||+|+++.+| .++++ ++|+
T Consensus 24 ~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~---------~~~~~Y~~~~G~~~LReaia~~~~~~~g--~~~~~~~~I~ 92 (418)
T d1w7la_ 24 EHDVVNLGQGFPDFPPPDFAVEAFQHAVSGD---------FMLNQYTKTFGYPPLTKILASFFGELLG--QEIDPLRNVL 92 (418)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTSSC---------GGGGSCCCTTCCHHHHHHHHHHHHHHHT--CCCCHHHHEE
T ss_pred CCCCEECCCCCCCCCCCHHHHHHHHHHHhCC---------CcccCCCCCcCCHHHHHHHHHHHHHHhC--CCCCccccee
Confidence 347899999998775 466666666544221 1245799999999999999999999887 44665 6899
Q ss_pred EecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC----------CCCCcCCHHHHHHHHHHH
Q 046900 125 VTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS----------SNNFQITPQALEAAYKEA 194 (442)
Q Consensus 125 ~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~----------~~~~~~d~~~l~~~l~~~ 194 (442)
+|+|+++++.+++++++++||.|++++|+|+.|...+.. .|++++.++.+. +.+|.+|.+++.....
T Consensus 93 it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~-~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-- 169 (418)
T d1w7la_ 93 VTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMM-AGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT-- 169 (418)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-TTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCC--
T ss_pred eccCcHHHHHHHHHhhccCCceeeccccccchhHHHHHH-cCCEeeccccccccccccccccccCcccchhhhhcccc--
Confidence 999999999999999999999999999999999999985 999999888654 2356777777666543
Q ss_pred HhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEe
Q 046900 195 ESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVY 274 (442)
Q Consensus 195 ~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~ 274 (442)
.++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++.++... .++++++.
T Consensus 170 ----~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~-----~~~~i~~~ 240 (418)
T d1w7la_ 170 ----SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGM-----WERTLTIG 240 (418)
T ss_dssp ----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTT-----GGGEEEEE
T ss_pred ----ccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHcccc-----ccccceec
Confidence 378899999999999999999999999999999999999999999999988777777665432 47899999
Q ss_pred cCcccCCCCCceeEEEeecCHHHHHHHHHccc--cCCCcHHHHHHHHHHhcCchhH----HHHHHHHHHHHHHHHHHHHH
Q 046900 275 SLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS--FTLISSQTQYLLASMLSNKKFT----ENYIKTNRERLQKRYQMIIE 348 (442)
Q Consensus 275 S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~ 348 (442)
|+||.+++||+|+||++++ +.+...+.+... ...++++.|.++..++.+.... .+++..+++.++++|+.+.+
T Consensus 241 S~SK~~~~pG~RvG~~v~~-~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~ 319 (418)
T d1w7la_ 241 SAGKTFSATGWKVGWVLGP-DHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIR 319 (418)
T ss_dssp EHHHHTTCGGGCCEEEECC-HHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccCCCCcccccccc-hhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhh
Confidence 9999999999999999994 556656554433 3567888998888887653321 35678889999999999999
Q ss_pred HHHhCCCeeecCCceEEEEEecCCccc-------ccChhhHHHHHHHHHHcCcEEEeCCCCCCC-----CCCCEEEEEee
Q 046900 349 GLRSAGIECLKGNAGLFCWMNLSPLLE-------EQTREGELALWDSMLHEVKLNISPGSSCHC-----SEPGWFRVCFA 416 (442)
Q Consensus 349 ~L~~~g~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~-----~~~~~iRls~~ 416 (442)
.|++.|+++..|+||||+|+++++... .....++.+++.+|++++||.|.||+.|+. ..++|||||++
T Consensus 320 ~L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~ 399 (418)
T d1w7la_ 320 SLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFV 399 (418)
T ss_dssp HHHTTTCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECC
T ss_pred hhhhcCCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEc
Confidence 999999999999999999999875321 111224678999999999999999999974 23589999998
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 046900 417 NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 417 ~~~~e~i~~~l~~l~~~l 434 (442)
. +++++++++++|+++.
T Consensus 400 ~-~~~~l~~a~~rl~~~~ 416 (418)
T d1w7la_ 400 K-DEATLQAMDEKLRKWK 416 (418)
T ss_dssp C-CHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHh
Confidence 7 8999999999999874
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.4e-53 Score=415.47 Aligned_cols=390 Identities=18% Similarity=0.286 Sum_probs=309.8
Q ss_pred ccccchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCceeeeeccccc---ccHHHHHHHHHhCCCCcccCCCCCCCCc
Q 046900 11 SVGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQ---VSFDLLEEYLEQQPEASTWGKGAPGFRE 87 (442)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (442)
+=+||+++++. ..+.+ +.+..- ...+++|+|+.+.+. +|.+.+.+.+++..... ...
T Consensus 13 ~~~~s~~~~~~---~~s~i----r~~~~~-----~~~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~--------~~~ 72 (420)
T d1vp4a_ 13 EGKISKIGQNM---KSSII----REILKF-----AADKDAISFGGGVPDPETFPRKELAEIAKEIIEKE--------YHY 72 (420)
T ss_dssp HHHCCHHHHTC---CCCCH----HHHTTT-----TTSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHS--------HHH
T ss_pred HHHHhHHHHhC---CCcHH----HHHHHH-----hCCCCcEecCCcCCCCccCCHHHHHHHHHHHHhhC--------Ccc
Confidence 34588888886 34433 333221 134579999998642 46666665554432110 012
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCc
Q 046900 88 NALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGI 167 (442)
Q Consensus 88 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~ 167 (442)
..+|+++.|+++||++||+|+++++|.. .+++++|++|+|+++++.+++.+++++||.|++++|+|+.|...++. .|+
T Consensus 73 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~-~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~-~g~ 150 (420)
T d1vp4a_ 73 TLQYSTTEGDPVLKQQILKLLERMYGIT-GLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQ-YLA 150 (420)
T ss_dssp HTSCCCTTCCHHHHHHHHHHHHHHHCCC-SCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHT-TTC
T ss_pred ccCCCCCcCCHHHHHHHHHHHHHHhCCC-CCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchhHHHHH-Hhh
Confidence 4579999999999999999999988732 26899999999999999999999999999999999999999999985 999
Q ss_pred EEEEEecCCCCCCcCCHHHHHHHHHHHHhcC--Cc-eeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCc
Q 046900 168 KIVPIHCDSSNNFQITPQALEAAYKEAESKD--MR-VRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSG 244 (442)
Q Consensus 168 ~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~--~~-~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~ 244 (442)
+++.+|+++++ +|++.++..+.+..... .+ ..+++++|||||||.+++.+++++|+++|++|+++||+||+|.+
T Consensus 151 ~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~ 227 (420)
T d1vp4a_ 151 NFVVVPLEDDG---MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGA 227 (420)
T ss_dssp EEEEEEEETTE---ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred hcccccccccc---cccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhh
Confidence 99999988654 78888888776543321 23 34556779999999999999999999999999999999999999
Q ss_pred CCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHh
Q 046900 245 SAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASML 322 (442)
Q Consensus 245 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l 322 (442)
+.|++....+...... .+++++++|+||.++ +|+|+||+++ ++.+++.+.+.... ...+.+.|.+++.++
T Consensus 228 l~~~~~~~~~~~~~~~------~~~~i~~~s~sk~~~-~G~RiG~~~~-~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l 299 (420)
T d1vp4a_ 228 LRYEGETVDPIFKIGG------PERVVLLNTFSKVLA-PGLRIGMVAG-SKEFIRKIVQAKQSADLCSPAITHRLAARYL 299 (420)
T ss_dssp CBCSSCCCCCHHHHHC------TTTEEEEEESTTTTC-GGGCEEEEEC-CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred ccccCccccccccccc------ccceeEEeccccccc-cccccccccc-cchhhhhhhhhhhhccccCchhhhhhhhhhc
Confidence 9998877777666554 488999999999885 9999999999 55666655543333 456788999988888
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEE
Q 046900 323 SNKKFTENYIKTNRERLQKRYQMIIEGLRSA-----GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNI 397 (442)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v 397 (442)
.+..+ .+++++.++.++++++.+.+.|.+. |+++..|+||||+|+++++..+ +.++++.|.++ ||.+
T Consensus 300 ~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~~~d------~~~~~~~l~~~-gV~v 371 (420)
T d1vp4a_ 300 ERYDL-LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFD------TWEMFEYAKRK-KVFY 371 (420)
T ss_dssp HHSCH-HHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCC------TTTTHHHHHHH-TEEC
T ss_pred ccccc-cccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECCCCCC------HHHHHHHHHHC-CeEE
Confidence 87655 6677888899999999999998764 7889999999999999987543 34566666565 9999
Q ss_pred eCCCCCCCCC--CCEEEEEeecCCHHHHHHHHHHHHHHHHHHHhhc
Q 046900 398 SPGSSCHCSE--PGWFRVCFANMSEQTLEVALKRIHNFMQKRERRR 441 (442)
Q Consensus 398 ~pg~~f~~~~--~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~~~ 441 (442)
.||+.|+..+ .+|+|||++..+++++++++++|+++++++.+++
T Consensus 372 ~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a~~rL~~~l~~~~~~~ 417 (420)
T d1vp4a_ 372 VPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGKEK 417 (420)
T ss_dssp EEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EechhhCCCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHHhhHhh
Confidence 9999997643 5799999986688999999999999999998765
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-53 Score=409.51 Aligned_cols=353 Identities=16% Similarity=0.232 Sum_probs=286.8
Q ss_pred eeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecC
Q 046900 50 VIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAG 128 (442)
Q Consensus 50 ~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G 128 (442)
+|+|+++++.++. +.+.+.+.+.... ...+|++..| +++|++|++++.+++| .++++++|++|+|
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~~-----------~~~~Y~~~~g-~~lr~~ia~~~~~~~g--~~~~~~~i~it~G 66 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLMH-----------GVFGYSRWKN-DEFLAAIAHWFSTQHY--TAIDSQTVVYGPS 66 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHTT-----------CCCCCCCSCC-HHHHHHHHHHHHHHSC--CCCCGGGEEEESC
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCC-HHHHHHHHHHHHHHhC--CCCCcceEEEeCC
Confidence 4789999988864 5666666554321 2347998888 6899999999999887 5678999999999
Q ss_pred hHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC-CCCCcCCHHHHHHHHHHHHhcCCceeEEEEe
Q 046900 129 ATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS-SNNFQITPQALEAAYKEAESKDMRVRGVLIT 207 (442)
Q Consensus 129 ~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~-~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~ 207 (442)
+++++..++.+++++||+|++++|+|+.|...+.. .|.++++++.+. +++|.+|++.+++.+.+ .++++++++
T Consensus 67 ~~~~l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~-----~~~~~i~l~ 140 (361)
T d1d2fa_ 67 VIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEG-NQRTVMPVALEKQADGWFCDMGKLEAVLAK-----PECKIMLLC 140 (361)
T ss_dssp HHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHH-TTCEEEEEECEECSSSEECCHHHHHHHHTS-----TTEEEEEEE
T ss_pred HHHHHHHHhhhccccccccccccccccchhHHHHh-hcceEEeecccccccccccccccchhhccc-----CCceeEEec
Confidence 99999999999999999999999999999998885 899999998764 45688999999998853 488999999
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCcee
Q 046900 208 NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRV 287 (442)
Q Consensus 208 ~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~Ri 287 (442)
|||||||.+++.+++++|+++|++++++||+||+|.++.|++....++.... .++++++.|+||.++++|+|+
T Consensus 141 ~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-------~~~~v~~~s~SK~~~~~g~R~ 213 (361)
T d1d2fa_ 141 SPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVA-------RGDWALLTSGSKSFNIPALTG 213 (361)
T ss_dssp SSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTC-------CSSEEEEECSHHHHTCGGGCC
T ss_pred ccccccccccchhhhhhhhhhhhhhheeeeeccccccccccccccccccccc-------ccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999876665554332 478899999999999999999
Q ss_pred EEEeecCHHHHHH-HHHccccCC---CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeecCC
Q 046900 288 GTIYSYNDKVVTT-ARRMSSFTL---ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA--GIECLKGN 361 (442)
Q Consensus 288 G~i~~~~~~~~~~-~~~~~~~~~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~ 361 (442)
||++++++..... +........ .+...+.+....+. ...++.++.+..++++++.+.+.+.+. ++.+..|+
T Consensus 214 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~ 290 (361)
T d1d2fa_ 214 AYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQ---QGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQ 290 (361)
T ss_dssp EEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCS
T ss_pred eeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhh---ccchhhhcccccchhhHHHHHHHhhhhcccccccccC
Confidence 9998866554433 333333222 22333333322332 224567788888999999988887664 77888899
Q ss_pred ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 362 AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 362 ~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
||+|+|++++.... ++.+++.+|++++||.|.||+.|+..+++|+|||++. +++++++++++|++++++++
T Consensus 291 gg~~~~~~l~~~~~-----~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~-~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 291 STYLAWLDLRPLNI-----DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp BCSEEEEECGGGCC-----CHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred ceeEEEEEccCCCC-----CHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcC-CHHHHHHHHHHHHHHHHhcC
Confidence 99999999864211 3788999999999999999999987777899999986 88999999999999998864
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1e-52 Score=410.78 Aligned_cols=377 Identities=20% Similarity=0.341 Sum_probs=300.3
Q ss_pred cchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccC
Q 046900 14 LSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQ 92 (442)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 92 (442)
+|+|.... ..+++. .-..+.+. ....+.++|+|+++++.+++ +.+.+.+.+.. ....+|+
T Consensus 1 ~~~r~~~~---~~~~i~-~l~~~a~~---~~~~g~~vi~l~~G~p~~~~p~~~~~al~~~~------------~~~~~Y~ 61 (389)
T d2gb3a1 1 FSDRVLLT---EESPIR-KLVPFAEM---AKKRGVRIHHLNIGQPDLKTPEVFFERIYENK------------PEVVYYS 61 (389)
T ss_dssp CCHHHHSC---CCCTTG-GGHHHHHH---HHHTTCEEEECSSCCCCSCCCTHHHHHHHHTC------------CSSCCCC
T ss_pred CChhhhcC---CCCHHH-HHHHHHHH---HHHcCCCEEECCCCCCCCCCCHHHHHHHHhcC------------CCCCCCC
Confidence 47777776 345443 21222211 12335689999999987753 45555665543 2356799
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEE
Q 046900 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPI 172 (442)
Q Consensus 93 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v 172 (442)
+..|.++||++||+|+.+++| +.+++++|++|+|+++++..++.+++++||.|++++|+|+.+...+.. .|+.++.+
T Consensus 62 ~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~-~g~~~~~~ 138 (389)
T d2gb3a1 62 HSAGIWELREAFASYYKRRQR--VDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKI-AGVKLIPV 138 (389)
T ss_dssp CTTCCHHHHHHHHHHHHHTSC--CCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHH-HTCEEEEE
T ss_pred CCcCCHHHHHHHHHHHHHhcC--CCcccceEEecccccccccccccccccCCCeEEEeCCCCccccccccc-cCcccccc
Confidence 999999999999999998876 568899999999999999999999999999999999999999999985 89999999
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+.+.++.+ .+.+.+...+. .++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++...
T Consensus 139 ~~~~~~~~-~~~~~~~~~~~------~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~ 211 (389)
T d2gb3a1 139 TRRMEEGF-AIPQNLESFIN------ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFA 211 (389)
T ss_dssp ECCGGGTS-CCCTTGGGGCC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC
T ss_pred cccccccc-chhhhhhhhcc------cCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccc
Confidence 98765433 33344444332 388999999999999999999999999999999999999999999999877543
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc-cCCCcHHHHHHHHHHhcCchhHHHH
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS-FTLISSQTQYLLASMLSNKKFTENY 331 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~ 331 (442)
.. ... ..++++++.|+||.+++||+|+||++++++.+.+....... .+..+.+.|.++..++... +++
T Consensus 212 ~~-~~~-------~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~ 280 (389)
T d2gb3a1 212 SA-LSI-------ESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSF 280 (389)
T ss_dssp CG-GGS-------CCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCC---HHH
T ss_pred cc-ccc-------ccccccccccccccccCcccceeeeeccchhHHHHHhhhhhcccccccccccccccccccc---chh
Confidence 22 211 25788999999999999999999999988777766554333 3555677777777777643 457
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-eeecCCceEEEEEecCCcccccChhhHHHHHHHHHHc-----CcEEEeCCCCCCC
Q 046900 332 IKTNRERLQKRYQMIIEGLRSAGI-ECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHE-----VKLNISPGSSCHC 405 (442)
Q Consensus 332 ~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~gi~v~pg~~f~~ 405 (442)
++++++.++++++.+.+.|+++|+ .+..|++|+|+|++++.. ++.+++++|+++ +||.+.||+.|+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~lp~~-------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~ 353 (389)
T d2gb3a1 281 FDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVE-------DAEEFARWMLTDFNMDGETTMVAPLRGFYL 353 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECSSS-------CHHHHHHHHHHSCCBTTEEEECEEGGGGCS
T ss_pred cccccccccccchhhhhhhhhhccccccCCCceEEEEEeCCCC-------CHHHHHHHHHHhhhhhhCCEEEEeCccccc
Confidence 888999999999999999999865 467799999999999753 367888888775 3789999998875
Q ss_pred C---CCCEEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 046900 406 S---EPGWFRVCFANMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 406 ~---~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
. +++|+||+++. +++++++++++|++++++..
T Consensus 354 ~~~~~~~~iRis~~~-~~~~l~~a~~~L~~~lk~f~ 388 (389)
T d2gb3a1 354 TPGLGKKEIRIACVL-EKDLLSRAIDVLMEGLKMFC 388 (389)
T ss_dssp STTTTSSEEEEECCS-CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEcC-CHHHHHHHHHHHHHHHHHhh
Confidence 3 35799999986 89999999999999998763
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-52 Score=407.18 Aligned_cols=349 Identities=22% Similarity=0.311 Sum_probs=292.6
Q ss_pred ceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC-cEEEe
Q 046900 49 GVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN-RIVVT 126 (442)
Q Consensus 49 ~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~i~~t 126 (442)
++|||+.+.+.+++ +.+.+.+.+.... ...+|++..|.++||++||+|+++.+| +.++++ +|++|
T Consensus 27 ~~i~l~~G~Pd~~~p~~i~~a~~~~~~~-----------~~~~Y~~~~G~~~LReaia~~~~~~~g--~~~~~~~~I~vt 93 (382)
T d1u08a_ 27 QAINLSQGFPDFDGPRYLQERLAHHVAQ-----------GANQYAPMTGVQALREAIAQKTERLYG--YQPDADSDITVT 93 (382)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHHT-----------TCCSCCCTTCCHHHHHHHHHHHHHHHS--CCCCTTTTEEEE
T ss_pred CCEEccCCCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCcCCHHHHHHHHHHHHHHhC--CCCCCCceEEec
Confidence 77999999887643 5566655544321 245799999999999999999999887 456676 59999
Q ss_pred cChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
+|+++++.+++.+++++||.|++++|+|+.+...+.. .|+.++.+++++ +++.+|.+++++.+.+ +++++++
T Consensus 94 ~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~-~~~~~d~~~l~~~~~~------~~~~i~l 165 (382)
T d1u08a_ 94 AGATEALYAAITALVRNGDEVICFDPSYDSYAPAIAL-SGGIVKRMALQP-PHFRVDWQEFAALLSE------RTRLVIL 165 (382)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-TTCEEEEEECCT-TTCCCCHHHHHHHCCT------TEEEEEE
T ss_pred cchHHHHHHHHhhcccccceEEEecccccchhhhhhh-ccccceeccccc-ccccCCHHHHhhhhcc------CccEEEE
Confidence 9999999999999999999999999999999998885 899888888764 5678899999887654 8899999
Q ss_pred eCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCce
Q 046900 207 TNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFR 286 (442)
Q Consensus 207 ~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~R 286 (442)
+|||||||.+++.+++++|+++|.+++++++.|++|..+.+.+....+....... .+++|++.|+||.+++||+|
T Consensus 166 ~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~s~SK~~~~pG~R 240 (382)
T d1u08a_ 166 NTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQL-----RERAVAVSSFGKTYHMTGWK 240 (382)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHH-----HTTEEEEEEHHHHTTCGGGC
T ss_pred CCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccc-----cCcEEEEeeccccccCCccc
Confidence 9999999999999999999999999999999999999988876544444333332 37899999999999999999
Q ss_pred eEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceE
Q 046900 287 VGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGL 364 (442)
Q Consensus 287 iG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~ 364 (442)
+||++++ +.+.+.+.+.. ....++.+.|.++..++..++ +++.++++.++++++.+.+.+...|+.+..|+|||
T Consensus 241 iG~~v~~-~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~ 316 (382)
T d1u08a_ 241 VGYCVAP-APISAEIRKVHQYLTFSVNTPAQLALADMLRAEP---EHYLALPDFYRQKRDILVNALNESRLEILPCEGTY 316 (382)
T ss_dssp CEEEECC-HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCT---HHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSS
T ss_pred chhhhcc-chhHHHHHhhhcccccccccccccccccccccch---HHHHHHHHHHHhhhhhhhhhhccCCcEEecCCceE
Confidence 9999995 55555544332 236678899999999987543 57888999999999999999988899999999999
Q ss_pred EEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC--CCCEEEEEeecCCHHHHHHHHHHHHH
Q 046900 365 FCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS--EPGWFRVCFANMSEQTLEVALKRIHN 432 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~--~~~~iRls~~~~~~e~i~~~l~~l~~ 432 (442)
|+|++++.... .++.+++.+|++++||.+.||+.|+.. ..+||||||+. ++|+++++++||++
T Consensus 317 ~~~~~~~~~~~----~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~-~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 317 FLLVDYSAVST----LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ 381 (382)
T ss_dssp EEEEECTTTCC----SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred EEEEecCCCCC----CCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHhC
Confidence 99999986422 136789999999889999999999753 34799999987 89999999999976
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=6.7e-52 Score=406.87 Aligned_cols=387 Identities=19% Similarity=0.264 Sum_probs=303.4
Q ss_pred cccchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCceeeeecccc---cccHHHHHHHHHhCCCCcccCCCCCCCCcc
Q 046900 12 VGLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAEN---QVSFDLLEEYLEQQPEASTWGKGAPGFREN 88 (442)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (442)
=.+|+|++.. +.|.+. .+..+. +.+++|||+.+.+ .+|.+.+++.+.+..... ..+.
T Consensus 5 ~~~~~~~~~~---~~s~ir-e~~~~~--------~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~--------~~~~ 64 (403)
T d1wsta1 5 SFFSEKAMLM---KASEVR-ELLKLV--------ETSDVISLAGGLPAPETFPVETIKKIAVEVLEEH--------ADKA 64 (403)
T ss_dssp GGCCHHHHHC---CCHHHH-HHHHHH--------TSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHS--------HHHH
T ss_pred HHHHHHHhcC---CCcHHH-HHHHHh--------CCCCcEECCCCCCCccccCHHHHHHHHHHHHHhC--------cccc
Confidence 3578888887 334332 222222 1246899998754 345566666555432110 0134
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcE
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIK 168 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~ 168 (442)
.+|++..|+++||++||+|+++++| .++++++|++|+|+++++..++.+++++||.|++++|+|+.+...+.. .|++
T Consensus 65 ~~Y~~~~G~~~lR~aia~~l~~~~g--~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~-~g~~ 141 (403)
T d1wsta1 65 LQYGTTKGFTPLRLALARWMEKRYD--IPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKY-YDPE 141 (403)
T ss_dssp HSCCCSSCCHHHHHHHHHHHHHHHC--CCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHT-TCCE
T ss_pred cCCCCCcCCHHHHHHHHHHHHHHhC--CCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHhh-cccc
Confidence 6799999999999999999999887 567899999999999999999999999999999999999999999985 9999
Q ss_pred EEEEecCCCCCCcCCHHHHHHHHHHHHh-cCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCC
Q 046900 169 IVPIHCDSSNNFQITPQALEAAYKEAES-KDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAF 247 (442)
Q Consensus 169 v~~v~~~~~~~~~~d~~~l~~~l~~~~~-~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~ 247 (442)
++.++.++.+ .+...+......... ......++++++||||||.++|.+++++|+++|++|+++||+||+|.++.|
T Consensus 142 ~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~ 218 (403)
T d1wsta1 142 FISIPLDDKG---MRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRY 218 (403)
T ss_dssp EEEEEEETTE---ECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC
T ss_pred ceeEeecccC---CccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheec
Confidence 9999998754 343444333332222 223445677789999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHHHhcCc
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLASMLSNK 325 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~ 325 (442)
++.+..++.... ..+++++++|+||.++ ||+|+||++++ +.+.+.+.... .....+...|.+.+.++...
T Consensus 219 ~~~~~~~~~~~~------~~~~~i~~~S~SK~~~-~G~RiG~~i~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (403)
T d1wsta1 219 SGEPTPPIKHFD------DYGRVIYLGTFSKILA-PGFRIGWVAAH-PHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENG 290 (403)
T ss_dssp SSCCCCCGGGGC------SSSCEEEEEESTTTTC-GGGCCEEEEEC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTT
T ss_pred CCCCCCcccccC------CCCcEEEEccccceec-Ccccccccccc-hHHHHHHHHHHhhhccccccchhhhHHhhhhcc
Confidence 887766654443 2589999999999996 99999999994 55555444322 22556778888888887776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC---CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCC
Q 046900 326 KFTENYIKTNRERLQKRYQMIIEGLRSA---GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSS 402 (442)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~ 402 (442)
.. ++++++.++.++++++.+.+.|.+. |+.+..|.||+|+|+++++..+ ...+++.|+++ ||.+.||+.
T Consensus 291 ~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~gg~~~~~~~~~~~~------~~~~~~~l~~~-gV~v~pg~~ 362 (403)
T d1wsta1 291 YL-DEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGID------TKLMMERAVAK-GVAYVPGEA 362 (403)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECCTTCC------TTTTHHHHHHT-TEECEEGGG
T ss_pred cc-chhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCCCceeEEEEECCCCCC------HHHHHHHHHHC-CEEEEechh
Confidence 54 7788999999999999999999874 7888899999999999997543 34567777666 999999999
Q ss_pred CCCC--CCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHhh
Q 046900 403 CHCS--EPGWFRVCFANMSEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 403 f~~~--~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
|+.. .++|+||+++..+++++++++++|+++++++.+|
T Consensus 363 f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~~~k~ 402 (403)
T d1wsta1 363 FFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEMKR 402 (403)
T ss_dssp GSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9753 3589999998668999999999999999988775
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.1e-51 Score=395.73 Aligned_cols=361 Identities=24% Similarity=0.361 Sum_probs=290.6
Q ss_pred ccchhhhhcccCCCCcchhhhhhhhcCCCCCCCCCCceeeeeccccccc-HHHHHHHHHhCCCCcccCCCCCCCCccccc
Q 046900 13 GLSKVAVSETHGEDSPYFAGWKAYDENPYEESTNPSGVIQMGLAENQVS-FDLLEEYLEQQPEASTWGKGAPGFRENALF 91 (442)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 91 (442)
++|+|.... ..+.+....++.+. .++|||+++.+.++ ++.+.+.+.+..+ ...+|
T Consensus 2 ~~~~~~~~~----~~~~~~~~~~la~~--------~~~I~ls~g~p~~~~p~~i~~al~~~l~------------~~~~Y 57 (368)
T d1v2da_ 2 RLHPRTEAA----KESIFPRMSGLAQR--------LGAVNLGQGFPSNPPPPFLLEAVRRALG------------RQDQY 57 (368)
T ss_dssp CCCGGGGGC-------CHHHHHHHHHH--------HTCEECCCCSCSSCCCHHHHHHHHHHTT------------TSCSC
T ss_pred CCChhhhhc----CCCHHHHHHHHhcc--------CCCEEecCCCCCCCCCHHHHHHHHHHhh------------cccCC
Confidence 456666554 22444444444332 36899999987664 3666666665432 23579
Q ss_pred CCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEE
Q 046900 92 QDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVP 171 (442)
Q Consensus 92 ~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~ 171 (442)
+++.|.++||++||++++ +++++|++|+|+++++..++.+++++||.|++++|+|+.+...+.. .|.+++.
T Consensus 58 ~~~~G~~elr~aiA~~~~--------~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~-~g~~~~~ 128 (368)
T d1v2da_ 58 APPAGLPALREALAEEFA--------VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFL-AGAKARL 128 (368)
T ss_dssp CCTTCCHHHHHHHHHHHT--------SCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-TTCEEEE
T ss_pred CCCcCCHHHHHHHHhhcc--------cCCcceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHHh-cCCccce
Confidence 999999999999999975 7899999999999999999999999999999999999999999885 8999998
Q ss_pred EecCC-CCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 172 IHCDS-SNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 172 v~~~~-~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
++++. .+++.+|++.+++.+++ ++++++++|||||||.+++.+++++|+++|++|+++||+||+|..+.+...
T Consensus 129 ~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~ 202 (368)
T d1v2da_ 129 VRLDLTPEGFRLDLSALEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGER 202 (368)
T ss_dssp EECEEETTEEECCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC
T ss_pred eccccccccccCCHHHHHHhhcc------CceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccc
Confidence 88754 34688999999998865 788999999999999999999999999999999999999999998766554
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc--ccCCCcHHHHHHHHHHhcCchhH
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS--SFTLISSQTQYLLASMLSNKKFT 328 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~ 328 (442)
.. ..... . .++++++.|+||.++++|+|+||++++++. .+.+.+.. ....++.+.|.+++.++....+
T Consensus 203 ~~-~~~~~-~------~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~- 272 (368)
T d1v2da_ 203 PR-RLREF-A------PERTFTVGSAGKRLEATGYRVGWIVGPKEF-MPRLAGMRQWTSFSAPTPLQAGVAEALKLARR- 272 (368)
T ss_dssp CC-CHHHH-C------TTTEEEEEEHHHHTTCGGGCCEEEECCTTT-HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-
T ss_pred cc-ccccc-c------ccccceeecccccccccccccccccccccc-cchhhhhhhccccccccccccccccccccccc-
Confidence 33 22222 1 467888999999999999999999996544 44443322 2356788899998888876554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC--
Q 046900 329 ENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS-- 406 (442)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~-- 406 (442)
.+++++.++.++++++++.+.|++.|+++..|++|+|+|++++.. +.. ++++++||.+.||+.|+..
T Consensus 273 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~~~-------~~~----~ll~~~gI~v~pg~~F~~~~~ 341 (368)
T d1v2da_ 273 EGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGW-------DAF----RLVEEARVALIPASAFYLEDP 341 (368)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTTC-------CHH----HHHHHTCEECEEGGGGCSSSC
T ss_pred hhhHHHHHHHHHHhhhhhhhhHHhcCcEEecCCceeEEEEeCCcc-------HHH----HHHHhCCEEEEechhhCCCCC
Confidence 567889999999999999999999999999999999999999853 122 3456679999999999753
Q ss_pred CCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 407 EPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 407 ~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
.++|+|||++. ++|++++++++|++++
T Consensus 342 ~~~~iRis~~~-~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 342 PKDLFRFAFCK-TEEELHLALERLGRVV 368 (368)
T ss_dssp CTTEEEEECCS-CHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEecC-CHHHHHHHHHHHHHhC
Confidence 45899999987 8999999999999874
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.8e-49 Score=382.82 Aligned_cols=336 Identities=17% Similarity=0.254 Sum_probs=275.5
Q ss_pred CCCCCceeeeecccccccH-HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCc
Q 046900 44 STNPSGVIQMGLAENQVSF-DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR 122 (442)
Q Consensus 44 ~~~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~ 122 (442)
+.+|.++|||++++|++++ +.+.+.+.+.. .....|+++ |..+||+++|++++ +++++
T Consensus 18 g~~p~~~idls~~~np~~~p~~~~~a~~~~~------------~~~~~Yp~~-~~~~Lr~aia~~~~--------v~~~~ 76 (355)
T d1lc5a_ 18 GISPDQLLDFSANINPLGMPVSVKRALIDNL------------DCIERYPDA-DYFHLHQALARHHQ--------VPASW 76 (355)
T ss_dssp TSCGGGSEECSSCCCTTCCCHHHHHHHHHTG------------GGGGSCCCT-TCHHHHHHHHHHHT--------SCGGG
T ss_pred CCChhheEEccCCCCCCCCCHHHHHHHHHHH------------HHhccCCCC-ChHHHHHHHHHHhC--------CCHHH
Confidence 3457789999999998854 55666666543 235679765 56899999999985 68999
Q ss_pred EEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCcee
Q 046900 123 IVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVR 202 (442)
Q Consensus 123 i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 202 (442)
|++|+|+++++.+++.++ .++.+++..|.|+.|...... .+++++.+|++.+++|.++. .+.+.+. .+++
T Consensus 77 I~~~~g~~~~~~~~~~~~--~~~~~~v~~p~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~~~~------~~~~ 146 (355)
T d1lc5a_ 77 ILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQ-SGCEIRRWSLREADGWQLTD-AILEALT------PDLD 146 (355)
T ss_dssp EEEESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHHH-TTCEEEEEECCGGGTTCCCT-THHHHCC------TTCC
T ss_pred EEecccHHHHHHHHHhhh--ccccccccCCccceecccccc-ccccceeeeeeccCCcccee-eeeeccc------cccc
Confidence 999999999999988777 456677788999999888874 89999999998877888774 4444433 3889
Q ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCC
Q 046900 203 GVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGL 282 (442)
Q Consensus 203 ~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~ 282 (442)
+++++|||||||.+++.+++++|+++|++|++++|+||+|.++.+........ .. ..+++++++||||.||+
T Consensus 147 ~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~---~~-----~~~~~i~~~S~SK~~~l 218 (355)
T d1lc5a_ 147 CLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPA---LK-----DNPHIWVLRSLTKFYAI 218 (355)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGG---CT-----TCTTEEEEEESTTTTTC
T ss_pred eeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeeccccccc---cc-----ccccceeeccccccccc
Confidence 99999999999999999999999999999999999999999987765433221 11 25789999999999999
Q ss_pred CCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC
Q 046900 283 PGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGN 361 (442)
Q Consensus 283 ~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 361 (442)
||+|+||++++++.+.+.+++....+..+.++|.++..++++.+ ++.+.++.++++++++.+.|.+. ++++. |.
T Consensus 219 ~GlR~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-p~ 293 (355)
T d1lc5a_ 219 PGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEVALQDSA----WQQATWHWLREEGARFYQALCQLPLLTVY-PG 293 (355)
T ss_dssp TTTCCEEEECCCHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCHH----HHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CC
T ss_pred ccccccceeccchhhhHHHHhhcCCccccccccccccccccccc----hhHHHHHHHHHHHHHHHHHHhhcCCcEEC-CC
Confidence 99999999998787878787777778889999999999998754 46677888999999999999987 66654 56
Q ss_pred ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHH
Q 046900 362 AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 362 ~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l 434 (442)
+|+|+|++++. ++.++++.|+++ ||.|+||+.|+...++|+||+++ +++++++++++|++++
T Consensus 294 ~~~f~~~~~~~--------~~~~~~~~L~~~-gv~vr~~~~f~~~~~~~iRis~~--~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 294 RANYLLLRCER--------EDIDLQRRLLTQ-RILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVL 355 (355)
T ss_dssp SSSEEEEEESC--------TTCCHHHHHHTT-TEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCC--------CHHHHHHHHHHC-CcEEEeCccCCCCCCCEEEEEeC--CHHHHHHHHHHHHHhC
Confidence 67899999875 245678888766 99999999998777899999997 4788999999999874
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-46 Score=362.20 Aligned_cols=323 Identities=18% Similarity=0.285 Sum_probs=261.5
Q ss_pred CCceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEe
Q 046900 47 PSGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVT 126 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 126 (442)
..+.|.|+.|||+++.+. +... ..+.+||++.+ .+||+++|+|++ +++++|++|
T Consensus 26 ~~~~i~L~~ne~p~~~~~------~~~~-----------~~l~rYPd~~~-~~Lr~~ia~~~g--------v~pe~I~it 79 (354)
T d1fg7a_ 26 GNGDVWLNANEYPTAVEF------QLTQ-----------QTLNRYPECQP-KAVIENYAQYAG--------VKPEQVLVS 79 (354)
T ss_dssp TTCSEECSSCCCSSCCCC------CCCC-----------CCTTSCCCSSC-HHHHHHHHHHHT--------SCGGGEEEE
T ss_pred CCCCEEeeCCCCCCCCCH------HHHH-----------HHHhcCCCCcH-HHHHHHHHHHhC--------CChHHeeec
Confidence 356789999999875321 1110 23567988754 899999999985 789999999
Q ss_pred cChHHHHHHHHHhhcCCCC-eEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEE
Q 046900 127 AGATAANELLTFILADPGD-ALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVL 205 (442)
Q Consensus 127 ~G~~~ai~~~~~~l~~~gd-~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 205 (442)
+|++++|.+++++++++|| .|+++.|+|+.|...+.. .|++++.++.++ +|.+|++.+++.+. ++++++
T Consensus 80 ~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~~-~g~~v~~~~~~~--~~~~d~~~l~~~~~-------~~~~v~ 149 (354)
T d1fg7a_ 80 RGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAET-IGVECRTVPTLD--NWQLDLQGISDKLD-------GVKVVY 149 (354)
T ss_dssp SHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHH-HTCEEEECCCCT--TSCCCHHHHHTSCT-------TEEEEE
T ss_pred cCchHHHHHHHHHhhccccccccccccccccchhhhhc-cCceeecccccc--ccccchhhhhhccc-------ccceee
Confidence 9999999999999999998 588999999999999985 899999988764 68999999987653 789999
Q ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 206 ITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 206 l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
+||||||||.+++.++++.+.+.++ ++.++|+||+|.++.++.... . ... ..+++++++||||.||++|+
T Consensus 150 ~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~~-~---~~~-----~~~~~iv~~S~SK~~~laGl 219 (354)
T d1fg7a_ 150 VCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLA-G---WLA-----EYPHLAILRTLSKAFALAGL 219 (354)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSG-G---GTT-----TCTTEEEEEESSSTTCCGGG
T ss_pred ccCCCccceeEeeeccccccccccc-ccccccccccchhhccccccc-h---hhc-----ccccceEEeCCccccCCCcc
Confidence 9999999999999999999888876 577889999998876543221 1 111 25889999999999999999
Q ss_pred eeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCceE
Q 046900 286 RVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAG-IECLKGNAGL 364 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~ 364 (442)
|+||+++ ++.+++.+.+....+.++.+.|.++..++.+..+ .+.....+.+.++|+.+.+.+.+.+ +....|.+++
T Consensus 220 RiGy~i~-~~~~i~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~ 296 (354)
T d1fg7a_ 220 RCGFTLA-NEEVINLLMKVIAPYPLSTPVADIAAQALSPQGI--VAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETN 296 (354)
T ss_dssp CCEEEEE-CHHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHH--HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSS
T ss_pred ccccccc-cchhhhhhhhhcCccchhhHHHHHHHHHHhhhcc--ccccccchhhhhHHHHHHHHHHhCCCcceeCCCCce
Confidence 9999999 5677777777777888898888888877765442 3455666778889999999999885 4456677888
Q ss_pred EEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHH
Q 046900 365 FCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIH 431 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~ 431 (442)
|+|+++++ +.++++.|+++ ||+|++|+.|+. .++|+|||+++ ++++++++++|+
T Consensus 297 f~~~~~~~---------~~~~~~~L~~~-gIlvr~~~~~~~-~~~~lRisigt--~ee~~~~l~aLk 350 (354)
T d1fg7a_ 297 YILARFKA---------SSAVFKSLWDQ-GIILRDQNKQPS-LSGCLRITVGT--REESQRVIDALR 350 (354)
T ss_dssp EEEEEETT---------HHHHHHHHHHT-TEECEECTTSTT-CTTEEEEECCC--HHHHHHHHHHHH
T ss_pred EEEEeCCC---------HHHHHHHHHHC-CcEEecCCCCCC-CCCEEEEEeCC--HHHHHHHHHHHh
Confidence 99999875 56788888777 999999988763 46899999974 778888888876
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=1.4e-47 Score=375.55 Aligned_cols=345 Identities=15% Similarity=0.224 Sum_probs=273.0
Q ss_pred ceeeeeccc----c--cccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCc
Q 046900 49 GVIQMGLAE----N--QVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR 122 (442)
Q Consensus 49 ~~i~l~~~~----n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~ 122 (442)
+.|||+++. + +..++.+++........ .....|++..|.++||+++++|+.+.++ ..+++++
T Consensus 29 ~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~----------~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~~~ 96 (401)
T d7aata_ 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK----------KMDKEYLPIAGLADFTRASAELALGENS--EAFKSGR 96 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT----------TCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHTTC
T ss_pred CcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhC----------CCCCCCCCCCCCHHHHHHHHHHHhccCC--cccCcCc
Confidence 568999983 2 22346777655543211 1234799999999999999999987654 4466777
Q ss_pred EEEecChH-----HHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhc
Q 046900 123 IVVTAGAT-----AANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESK 197 (442)
Q Consensus 123 i~~t~G~~-----~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 197 (442)
|+++.|+. +++..+++++++|||.|++++|+|+.|...++. .|++++.+|+.++++|..|.+.+.+.+...
T Consensus 97 i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 172 (401)
T d7aata_ 97 YVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRD-AGLQLQAYRYYDPKTCSLDFTGAMEDISKI--- 172 (401)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHH-TTCEEEEEECEETTTTEECHHHHHHHHTTS---
T ss_pred eEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHH-cCCeEEEEeccccccccccHHHHHHHHhcC---
Confidence 87765543 577888889999999999999999999999995 999999999988888999999988887542
Q ss_pred CCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHH--HHHhhhcCCCCCcEEEEec
Q 046900 198 DMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIA--EILEARQYKDSERVHIVYS 275 (442)
Q Consensus 198 ~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~--~~~~~~~~~~~~~vi~~~S 275 (442)
..++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++....+.. .... ...+++++.|
T Consensus 173 ~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~s 247 (401)
T d7aata_ 173 PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIE-----QGIDVVLSQS 247 (401)
T ss_dssp CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHH-----TTCCCEEEEE
T ss_pred CCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhh-----hhcccceeEe
Confidence 34788999999999999999999999999999999999999999999999764333322 2222 2467888999
Q ss_pred CcccCCCCCceeEEEeecCHHHHHHHHH--------ccccCCCcHHHHHHHHHHhcCchhH---HHHHHHHHHHHHHHHH
Q 046900 276 LSKDLGLPGFRVGTIYSYNDKVVTTARR--------MSSFTLISSQTQYLLASMLSNKKFT---ENYIKTNRERLQKRYQ 344 (442)
Q Consensus 276 ~SK~~g~~G~RiG~i~~~~~~~~~~~~~--------~~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~ 344 (442)
+||.++++|+|+||++++...+....+. .......+.+.|.+++.++.+..+. .++++.++++|+++|+
T Consensus 248 ~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~ 327 (401)
T d7aata_ 248 YAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRT 327 (401)
T ss_dssp CTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999966543322111 1223456788999999999987643 3556778899999999
Q ss_pred HHHHHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCH
Q 046900 345 MIIEGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSE 420 (442)
Q Consensus 345 ~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~ 420 (442)
.+.+.|++++ +.+..+++|||+|+.++. +++++|++++||.+.|| +|||++.+++
T Consensus 328 ~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~-----------e~~~~L~~e~gV~~~pg----------~Ris~a~~~~ 386 (401)
T d7aata_ 328 QLVSNLKKEGSSHNWQHITDQIGMFCFTGLKP-----------EQVERLTKEFSIYMTKD----------GRISVAGVAS 386 (401)
T ss_dssp HHHHHHHHTTCCSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGCCT
T ss_pred HHHHHHHHhCCCCCcceECCCCeEEEecCCCH-----------HHHHHHHHhCCEEECCC----------cEEEeccCCH
Confidence 9999999875 456689999999987632 45788888889999997 3999997788
Q ss_pred HHHHHHHHHHHHHHH
Q 046900 421 QTLEVALKRIHNFMQ 435 (442)
Q Consensus 421 e~i~~~l~~l~~~l~ 435 (442)
++++.+.++|.++++
T Consensus 387 ~~i~~la~ai~~v~k 401 (401)
T d7aata_ 387 SNVGYLAHAIHQVTK 401 (401)
T ss_dssp TTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988763
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.9e-44 Score=344.36 Aligned_cols=320 Identities=16% Similarity=0.228 Sum_probs=251.5
Q ss_pred CCCCCCCceeeeecccccccH--HHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC
Q 046900 42 EESTNPSGVIQMGLAENQVSF--DLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD 119 (442)
Q Consensus 42 ~~~~~~~~~i~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 119 (442)
.....+.++|+|+++||++++ ..++...+.... .....| +..|.++||++||+|+++. .++
T Consensus 13 ~~~~~~~d~~~l~~~enp~~~p~~i~~~~~~~~~~-----------~~~~~y-p~~g~~~Lr~aia~~~~~~-----~v~ 75 (334)
T d2f8ja1 13 PYETEKRDKTYLALNENPFPFPEDLVDEVFRRLNS-----------DALRIY-YDSPDEELIEKILSYLDTD-----FLS 75 (334)
T ss_dssp CCCCCCCCSEECSSCCCSSCCCHHHHHHHHHHCCT-----------TGGGSC-CCSSCHHHHHHHHHHHTCS-----SCC
T ss_pred cccccCCCceEEECCCCCCCCCHHHHHHHHHHhhc-----------chhcCC-CCCCcHHHHHHHHHHhccc-----CCC
Confidence 334456789999999998865 334444444432 123345 4569999999999999742 268
Q ss_pred CCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCC
Q 046900 120 LNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDM 199 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~ 199 (442)
+++|++|+|+++++.+++. +||+|++++|+|+.|...++. .|++++.+|++++..+ + +. ...
T Consensus 76 ~d~I~it~G~~~~l~~l~~----~~d~v~i~~P~y~~~~~~~~~-~g~~~v~v~~~~~~~~--~-~~----------~~~ 137 (334)
T d2f8ja1 76 KNNVSVGNGADEIIYVMML----MFDRSVFFPPTYSCYRIFAKA-VGAKFLEVPLTKDLRI--P-EV----------NVG 137 (334)
T ss_dssp GGGEEEEEHHHHHHHHHHH----HSSEEEECSSCCHHHHHHHHH-HTCCEEECCCCTTSCC--C-CC----------CCC
T ss_pred cceEEecCcchhHHHHHhh----hccccccccccccccccchhc-cCCccccccccccccc--c-cc----------ccc
Confidence 9999999999999988765 458999999999999999995 9999999999875432 1 10 113
Q ss_pred ceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCccc
Q 046900 200 RVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKD 279 (442)
Q Consensus 200 ~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~ 279 (442)
++++++++|||||||.+++.+++.++ .++++++|+||+|.++.+...... .. ..+++++++||||.
T Consensus 138 ~~~~l~l~nP~NPtG~~~s~~~l~~~----~~~~~~ii~Dd~~~~~~~~~~~~~-----~~-----~~~~~i~~~S~SK~ 203 (334)
T d2f8ja1 138 EGDVVFIPNPNNPTGHVFEREEIERI----LKTGAFVALDEAYYEFHGESYVDF-----LK-----KYENLAVIRTFSKA 203 (334)
T ss_dssp TTEEEEEESSCTTTCCCCCHHHHHHH----HTTTCEEEEECTTGGGTCCCCGGG-----GG-----TCSSEEEEEESTTT
T ss_pred cceEEEecccccccceeecHHHhhcc----ccceeEEeecccchhhcccccccc-----cc-----cCceEEEEecCccc
Confidence 67899999999999999997776553 457999999999987654332211 11 25899999999999
Q ss_pred CCCCCceeEEEeecCHHHHHHHHHccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 046900 280 LGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK 359 (442)
Q Consensus 280 ~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 359 (442)
++++|+|+||+++ ++.+...++.....+.++.++|.++.+++.+.+ ++.+.++.++++|+.+.+.|++.|+++.+
T Consensus 204 ~~~~G~R~G~~~~-~~~~i~~l~~~~~~~~~s~~~~~~a~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~g~~~~~ 278 (334)
T d2f8ja1 204 FSLAAQRVGYVVA-SEKFIDAYNRVRLPFNVSYVSQMFAKVALDHRE----IFEERTKFIVEERERMKSALREMGYRITD 278 (334)
T ss_dssp SSCTTTCEEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTCEECC
T ss_pred cchhhhhhhhccc-chHHHHHHHHhhcccccchhhhhhccccccccc----chhhHHHHHHHHHHHHHHHHHHCCCeECC
Confidence 9999999999999 677788888777778889999999888887644 56777889999999999999999999998
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNF 433 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~ 433 (442)
++|+ |+|+.++.. ++.++++.|+++ ||.|+++ ++|+|||++. .+++++++++|+++
T Consensus 279 ~~g~-f~~~~~~~~-------~~~~~~~~L~~~-GI~vr~~-------~~~vRis~g~--~ee~~~l~~~l~~f 334 (334)
T d2f8ja1 279 SRGN-FVFVFMEKE-------EKERLLEHLRTK-NVAVRSF-------REGVRITIGK--REENDMILRELEVF 334 (334)
T ss_dssp CCSS-EEEEECCHH-------HHHHHHHHHHHT-TEECEEE-------TTEEEEECCC--HHHHHHHHHHHHHC
T ss_pred CCce-EEEEECCCC-------CHHHHHHHHHHC-CCEECCC-------CCeEEEEcCC--HHHHHHHHHHHhcC
Confidence 8877 788887752 467888888776 9999763 4689999975 67789998888763
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-46 Score=366.78 Aligned_cols=346 Identities=15% Similarity=0.205 Sum_probs=270.3
Q ss_pred ceeeeeccc---cc--cc-HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCc
Q 046900 49 GVIQMGLAE---NQ--VS-FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR 122 (442)
Q Consensus 49 ~~i~l~~~~---n~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~ 122 (442)
+.|||+++. +. .+ ++.++++........ .....|++..|+++||+++|+|+.+.++ ..+++++
T Consensus 27 ~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~---------~~~~~Y~p~~G~~~lR~aia~~~~~~~~--~~~~~~~ 95 (397)
T d3tata_ 27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP---------HGASLYLPMEGLNCYRHAIAPLLFGADH--PVLKQQR 95 (397)
T ss_dssp SCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSC---------CSSBCCCCTTCCHHHHHHHHHHHTCSSC--HHHHTTC
T ss_pred CcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCc---------ccCCCCCCcccCHHHHHHHHHHHhhccC--CcCCcCc
Confidence 348999983 21 22 366777655432111 1245799999999999999999987655 4567889
Q ss_pred EEEecChHHH----HHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcC
Q 046900 123 IVVTAGATAA----NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKD 198 (442)
Q Consensus 123 i~~t~G~~~a----i~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 198 (442)
|+++.|++++ +.+++..++++||.|++++|+|+.|...++. .|++++.+|++.++++..|.+.+.+.+.. ..
T Consensus 96 i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~-~G~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~ 171 (397)
T d3tata_ 96 VATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAG-AGFEVSTYPWYDEATNGVRFNDLLATLKT---LP 171 (397)
T ss_dssp EEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHT-TTCCCEECCCCCTTTSSCCHHHHHHHHTT---CC
T ss_pred EEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHH-cCCEEEEEecchhhccccchHHHHHHhhh---cc
Confidence 9988876664 5666677789999999999999999999995 99999999999888889998888877653 23
Q ss_pred CceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcc
Q 046900 199 MRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSK 278 (442)
Q Consensus 199 ~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK 278 (442)
.++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++....+....... ..++++++.|+||
T Consensus 172 ~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~----~~~~~i~~~s~SK 247 (397)
T d3tata_ 172 ARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIAS----AGLPALVSNSFSK 247 (397)
T ss_dssp SSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHT----TTCCCEECBCCHH
T ss_pred cccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhh----cCCceEEEecCcc
Confidence 467788999999999999999999999999999999999999999999975433333333332 2578999999999
Q ss_pred cCCCCCceeEEEeecCHHHHHH------HHH--ccccCCCcHHHHHHHHHHhcCchhHH---HHHHHHHHHHHHHHHHHH
Q 046900 279 DLGLPGFRVGTIYSYNDKVVTT------ARR--MSSFTLISSQTQYLLASMLSNKKFTE---NYIKTNRERLQKRYQMII 347 (442)
Q Consensus 279 ~~g~~G~RiG~i~~~~~~~~~~------~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~ 347 (442)
.++++|+|+||+++++..+... ... .......+...|.++..++.+..+.. ++++.++++++++|+.+.
T Consensus 248 ~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~ 327 (397)
T d3tata_ 248 IFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELV 327 (397)
T ss_dssp HHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999865432211 111 12234556788999888888765443 456667888999999999
Q ss_pred HHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHH
Q 046900 348 EGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTL 423 (442)
Q Consensus 348 ~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i 423 (442)
+.|...+ +.+.++++|||+|+.++. +++++|++++||.+.||+ ||+++.++++++
T Consensus 328 ~~L~~~~~~~~~~~~~~~~G~F~~~~ls~-----------e~~~~L~~e~~V~l~~g~----------Ri~~a~~~~~~i 386 (397)
T d3tata_ 328 KVLSTEMPERNFDYLLNQRGMFSYTGLSA-----------AQVDRLREEFGVYLIASG----------RMCVAGLNTANV 386 (397)
T ss_dssp HTTTTTCTTSCTTHHHHCCSSBCCCCCCH-----------HHHHHHTTTTCEECCSSS----------CCBTTSCCTTTH
T ss_pred HHHHHhCCCCceEEEcCCCceEEecCcCH-----------HHHHHHHHhCCEEeCCCC----------EEEeccCCHHHH
Confidence 9998763 667789999999987643 467889999999999963 999987788999
Q ss_pred HHHHHHHHHHH
Q 046900 424 EVALKRIHNFM 434 (442)
Q Consensus 424 ~~~l~~l~~~l 434 (442)
+++.++|.+++
T Consensus 387 ~~~~~ai~~v~ 397 (397)
T d3tata_ 387 QRVAKAFAAVM 397 (397)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999988763
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=9.6e-45 Score=356.17 Aligned_cols=353 Identities=17% Similarity=0.192 Sum_probs=265.7
Q ss_pred ceeeeeccc----c--cccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCc
Q 046900 49 GVIQMGLAE----N--QVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR 122 (442)
Q Consensus 49 ~~i~l~~~~----n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~ 122 (442)
+.|||+++. + +..++.+++..+...... ...++|++..|.++||+++++++.+.++ .....+.
T Consensus 30 ~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~---------~~~~~Y~p~~G~~~lr~aia~~~~~~~~--~~~~~~~ 98 (412)
T d1yaaa_ 30 TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS---------SYNHEYLGITGLPSLTSNAAKIIFGTQS--DALQEDR 98 (412)
T ss_dssp SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT---------TCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHTTC
T ss_pred CcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCc---------ccCCCCCCCCCCHHHHHHHHHHHhcccC--ccccccc
Confidence 458999972 2 222366766543321110 1245799999999999999999987654 2233333
Q ss_pred EEE--ecChHHHHHHH--HHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcC
Q 046900 123 IVV--TAGATAANELL--TFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKD 198 (442)
Q Consensus 123 i~~--t~G~~~ai~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 198 (442)
+++ +.|+..++..+ +..+..+||.|++++|+|+.|...+.. .|++++.+|+..++++.++.+.+++.+... .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 174 (412)
T d1yaaa_ 99 VISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFEN-QGLKTATYPYWANETKSLDLNGFLNAIQKA---P 174 (412)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHT-TTCCEEEEECEETTTTEECHHHHHHHHHHS---C
T ss_pred eeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHH-cCCceecccccccccccccchhhhcccccC---C
Confidence 333 23444444443 344578999999999999999999985 999999999988888999999998888752 2
Q ss_pred CceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcc
Q 046900 199 MRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSK 278 (442)
Q Consensus 199 ~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK 278 (442)
.+++++++++||||||.+++.+++++|+++|++++++||+||+|.++.|++....+.............++++++.|+||
T Consensus 175 ~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK 254 (412)
T d1yaaa_ 175 EGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAK 254 (412)
T ss_dssp TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTT
T ss_pred CceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCC
Confidence 35678899999999999999999999999999999999999999999997643333222111000123578999999999
Q ss_pred cCCCCCceeEEEeecCHHH------HHHHH------HccccCCCcHHHHHHHHHHhcCchhH---HHHHHHHHHHHHHHH
Q 046900 279 DLGLPGFRVGTIYSYNDKV------VTTAR------RMSSFTLISSQTQYLLASMLSNKKFT---ENYIKTNRERLQKRY 343 (442)
Q Consensus 279 ~~g~~G~RiG~i~~~~~~~------~~~~~------~~~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~~ 343 (442)
.|+++|+|+||++++++.+ ...+. ........+.+.|.++..++.+..+. .++++.+++.|+++|
T Consensus 255 ~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 334 (412)
T d1yaaa_ 255 NAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMR 334 (412)
T ss_dssp TSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999865322 11111 11234567789999999999987543 456778899999999
Q ss_pred HHHHHHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCC
Q 046900 344 QMIIEGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMS 419 (442)
Q Consensus 344 ~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~ 419 (442)
+.+.+.|++.| +.+..+++|||+|+.++. +++++|++++||.+.||+ ||+++.++
T Consensus 335 ~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls~-----------e~~~~L~~e~~V~~~~g~----------Ris~~g~~ 393 (412)
T d1yaaa_ 335 HALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTP-----------QMVKRLEETHAVYLVASG----------RASIAGLN 393 (412)
T ss_dssp HHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTTS----------EEEGGGCC
T ss_pred HHHHHHHHHhCCCCCCceeCCCceEEEecCcCH-----------HHHHHHHHhCCEEECCCC----------EEEeccCC
Confidence 99999998875 556789999999986632 567888888899998863 99998778
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 046900 420 EQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 420 ~e~i~~~l~~l~~~l~~~ 437 (442)
++.++.+.++|.++++.+
T Consensus 394 ~~~i~~l~~ai~~v~k~~ 411 (412)
T d1yaaa_ 394 QGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp TTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 888999999999988753
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=3.8e-44 Score=352.21 Aligned_cols=348 Identities=16% Similarity=0.204 Sum_probs=262.0
Q ss_pred ceeeeeccc---c---cccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCc
Q 046900 49 GVIQMGLAE---N---QVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR 122 (442)
Q Consensus 49 ~~i~l~~~~---n---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~ 122 (442)
+.|||+++. + +..++.++++.+...... ...++|++..|.++||+++++|+.+.++ ..++.++
T Consensus 31 ~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~---------~~~~~Y~p~~G~p~lreaia~~~~~~~~--~~~~~~~ 99 (412)
T d1ajsa_ 31 RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNS---------SLNHEYLPILGLAEFRTCASRLALGDDS--PALQEKR 99 (412)
T ss_dssp TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCT---------TCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHTTC
T ss_pred CcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCC---------CcCCCCCCCCCCHHHHHHHHHHHhccCC--ccccccc
Confidence 568999983 1 223466666544321110 1245799999999999999999987654 3345555
Q ss_pred --EEEecChHHHHHHHH-------HhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEe-cCCCCCCcCCHHHHHHHHH
Q 046900 123 --IVVTAGATAANELLT-------FILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIH-CDSSNNFQITPQALEAAYK 192 (442)
Q Consensus 123 --i~~t~G~~~ai~~~~-------~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~-~~~~~~~~~d~~~l~~~l~ 192 (442)
++.|.|++.++..+. .++++|||.|++++|+|+.|...+.. .|++.+.++ ..+++++..|.+.+++.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~-~G~~~v~~~~~~~~~~~~~d~~~~~~~~~ 178 (412)
T d1ajsa_ 100 VGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTT-AGFKDIRSYRYWDTEKRGLDLQGFLSDLE 178 (412)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHH-TTCSCEEEEECEETTTTEECHHHHHHHHH
T ss_pred ceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHH-cCCeEEEeecccccccccccHHHHHHHHH
Confidence 444555555544433 34479999999999999999999995 898766554 4455677889888887776
Q ss_pred HHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccH--HHHHhhhcCCCCCcE
Q 046900 193 EAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSI--AEILEARQYKDSERV 270 (442)
Q Consensus 193 ~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~--~~~~~~~~~~~~~~v 270 (442)
.. ..+++++++|+||||||.+++.+++++|+++|++|+++||+||+|.++.|++....+. ..... ..+++
T Consensus 179 ~~---~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~-----~~~~~ 250 (412)
T d1ajsa_ 179 NA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVS-----EGFEL 250 (412)
T ss_dssp HS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH-----TTCCE
T ss_pred hc---cCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhh-----hcccc
Confidence 52 3477889999999999999999999999999999999999999999999876432222 22222 24788
Q ss_pred EEEecCcccCCCCCceeEEEeecCHHHHHHH------HH--ccccCCCcHHHHHHHHHHhcCchhH---HHHHHHHHHHH
Q 046900 271 HIVYSLSKDLGLPGFRVGTIYSYNDKVVTTA------RR--MSSFTLISSQTQYLLASMLSNKKFT---ENYIKTNRERL 339 (442)
Q Consensus 271 i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~------~~--~~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~ 339 (442)
+++.|+||.++++|+|+||++++........ .. .......+...|.++..++.+..+. .++++.+++.|
T Consensus 251 ~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (412)
T d1ajsa_ 251 FCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRI 330 (412)
T ss_dssp EEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999654332221 11 1223456778899998888875432 45677889999
Q ss_pred HHHHHHHHHHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEe
Q 046900 340 QKRYQMIIEGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCF 415 (442)
Q Consensus 340 ~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~ 415 (442)
+++|+.+.+.|++++ +.+..+++|||.|+.+.. +++++|++++||.+.||+ ||++
T Consensus 331 ~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls~-----------~~v~~L~~e~gV~~vpg~----------Ri~~ 389 (412)
T d1ajsa_ 331 LSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNP-----------KQVEYLINQKHIYLLPSG----------RINM 389 (412)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEECCTTS----------EEEG
T ss_pred HHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCCCH-----------HHHHHHHHhCCEEEeCCC----------eEEe
Confidence 999999999999885 345678899999976532 456788899999999973 9999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHH
Q 046900 416 ANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 416 ~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+.+++++++.+.++|.+++++.
T Consensus 390 ag~~~~~i~~~a~aI~~av~~~ 411 (412)
T d1ajsa_ 390 CGLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp GGCCTTTHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHHHhc
Confidence 8668899999999999999874
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-44 Score=353.86 Aligned_cols=345 Identities=18% Similarity=0.212 Sum_probs=263.0
Q ss_pred ceeeeeccc----c--cccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCc
Q 046900 49 GVIQMGLAE----N--QVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR 122 (442)
Q Consensus 49 ~~i~l~~~~----n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~ 122 (442)
+.|||+++. + +..++.++++....... ...+.|++..|+++||+++|+|+.++++ ..+.++.
T Consensus 27 ~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~----------~~~~~Y~p~~G~~~lR~aia~~~~~~~~--~~~~~~~ 94 (396)
T d2q7wa1 27 GKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN----------ETTKNYLGIDGIPEFGRCTQELLFGKGS--ALINDKR 94 (396)
T ss_dssp -CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHH----------CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHTTC
T ss_pred CcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhC----------CCCCCCCCCcCCHHHHHHHHHHHHhhcC--Ccccccc
Confidence 458999982 2 12236666655443211 1234799999999999999999987655 2334443
Q ss_pred --EEEecChHHHHHHHH--HhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcC
Q 046900 123 --IVVTAGATAANELLT--FILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKD 198 (442)
Q Consensus 123 --i~~t~G~~~ai~~~~--~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 198 (442)
+++|.|++.++.+++ ..++++||.|++++|+|+.|...+.. .|++++.+++..++++..+.+.+.+.... ..
T Consensus 95 ~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 170 (396)
T d2q7wa1 95 ARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNS-AGLEVREYAYYDAENHTLDFDALINSLNE---AQ 170 (396)
T ss_dssp EEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHH-TTCEEEEEECEETTTTEECHHHHHHHHTT---CC
T ss_pred eeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHH-cCCeeEecccccccccccccchHHHHHHH---hc
Confidence 445667666665554 34478999999999999999999995 99999999998888888888877776543 23
Q ss_pred CceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcc
Q 046900 199 MRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSK 278 (442)
Q Consensus 199 ~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK 278 (442)
.++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++....+......+ ..++++++.|+||
T Consensus 171 ~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~----~~~~~~~~~s~sk 246 (396)
T d2q7wa1 171 AGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAA----MHKELIVASSYSK 246 (396)
T ss_dssp TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHH----HCSCEEEEEECTT
T ss_pred cCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhh----hcccccccccccc
Confidence 467888999999999999999999999999999999999999999999976544444333332 1477888999999
Q ss_pred cCCCCCceeEEEeecCHHHHHHHHH--------ccccCCCcHHHHHHHHHHhcCchh---HHHHHHHHHHHHHHHHHHHH
Q 046900 279 DLGLPGFRVGTIYSYNDKVVTTARR--------MSSFTLISSQTQYLLASMLSNKKF---TENYIKTNRERLQKRYQMII 347 (442)
Q Consensus 279 ~~g~~G~RiG~i~~~~~~~~~~~~~--------~~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l~ 347 (442)
.++++|+|+||+++++..+...... .......+...|.++..++.+... .+++++.+++.++++|+.+.
T Consensus 247 ~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~ 326 (396)
T d2q7wa1 247 NFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326 (396)
T ss_dssp TTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHH
T ss_pred cccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999976543322111 122345567788888888887543 24667788999999999999
Q ss_pred HHHHhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHH
Q 046900 348 EGLRSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTL 423 (442)
Q Consensus 348 ~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i 423 (442)
+.|+++| +.+..+++|+|.|+.++. +++++|++++||.+.||+ ||+++.++++++
T Consensus 327 ~~L~~~~~~~~~~~~~~~~G~F~~~~l~~-----------e~~~~L~~e~gV~~~~g~----------Ri~~a~l~~~~i 385 (396)
T d2q7wa1 327 NTLQEKGANRDFSFIIKQNGMFSFSGLTK-----------EQVLRLREEFGVYAVASG----------RVNVAGMTPDNM 385 (396)
T ss_dssp HHHHHTTCCSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTTC----------EEEGGGCCTTTH
T ss_pred HHHHHhCCCCCcceecCCCeEEEeeCCCH-----------HHHHHHHHhCCEEECCCC----------EEEecCCCHHHH
Confidence 9999986 445678899999987642 457888888899998864 999997788899
Q ss_pred HHHHHHHHHHH
Q 046900 424 EVALKRIHNFM 434 (442)
Q Consensus 424 ~~~l~~l~~~l 434 (442)
+.++++|.+++
T Consensus 386 ~~~~~ai~~v~ 396 (396)
T d2q7wa1 386 APLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998864
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=5.7e-43 Score=341.93 Aligned_cols=344 Identities=15% Similarity=0.211 Sum_probs=261.2
Q ss_pred ceeeeeccc------ccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCc
Q 046900 49 GVIQMGLAE------NQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNR 122 (442)
Q Consensus 49 ~~i~l~~~~------n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~ 122 (442)
+.|||+++. ++.+++.++++.+..... ...++|++..|+++||+++++++.+..+ ....++.
T Consensus 27 ~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~----------~~~~~Y~p~~G~~~lr~aia~~~~~~~~--~~~~~~~ 94 (394)
T d2ay1a_ 27 GKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET----------ETTKTYAGLSGEPEFQKAMGELILGDGL--KSETTAT 94 (394)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH----------CCCCCCCCSSCCHHHHHHHHHHHHGGGC--CGGGEEE
T ss_pred CCEEccCCCccCCCCCCCCCHHHHHHHHHHhhC----------CCCCCCCCCCCCHHHHHHHHHHHhcccc--ccccccc
Confidence 458999983 223346777665544321 1235799999999999999999987654 2223334
Q ss_pred EEEecC-hHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCce
Q 046900 123 IVVTAG-ATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRV 201 (442)
Q Consensus 123 i~~t~G-~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (442)
++++.| +..++.+.+..+.++||.|++++|+|+.|...++. .|++++.+++..++++..+.+.+++..... ..++
T Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~-~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 170 (394)
T d2ay1a_ 95 LATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNF-MGLPVQTYRYFDAETRGVDFEGMKADLAAA---KKGD 170 (394)
T ss_dssp EEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHH-HTCCEEEEECEETTTTEECHHHHHHHHHTC---CTTC
T ss_pred eeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHH-cCCEEEEecccchhcccccchhHHHHHhhc---ccCc
Confidence 444444 34446666677789999999999999999999995 999999999987777888888887776542 2356
Q ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC
Q 046900 202 RGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG 281 (442)
Q Consensus 202 ~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g 281 (442)
+++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++....+....... ...+++++.|+||.++
T Consensus 171 ~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~----~~~~~~~~~s~sk~~~ 246 (394)
T d2ay1a_ 171 MVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIAS----RIPEVLIAASCSKNFG 246 (394)
T ss_dssp EEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHH----HCSSEEEEEECTTTTT
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhh----hccccccccccccccc
Confidence 778888999999999999999999999999999999999999999976544344333322 1367888999999999
Q ss_pred CCCceeEEEeecCHHHHHHHH--------HccccCCCcHHHHHHHHHHhcCchhH---HHHHHHHHHHHHHHHHHHHHHH
Q 046900 282 LPGFRVGTIYSYNDKVVTTAR--------RMSSFTLISSQTQYLLASMLSNKKFT---ENYIKTNRERLQKRYQMIIEGL 350 (442)
Q Consensus 282 ~~G~RiG~i~~~~~~~~~~~~--------~~~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~l~~~L 350 (442)
++|+|+||++++...+....+ ........+...|.++..++.+..+. .++++.++++++++|+.+.+.|
T Consensus 247 ~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L 326 (394)
T d2ay1a_ 247 IYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGEL 326 (394)
T ss_dssp CGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999986544332211 11222445667888888888876532 4567778899999999999999
Q ss_pred HhCC----CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecCCHHHHHHH
Q 046900 351 RSAG----IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANMSEQTLEVA 426 (442)
Q Consensus 351 ~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~~~e~i~~~ 426 (442)
++++ +.+..+++|||+|+.++. +++++|++++||.+.||. ||+++.++++.++.+
T Consensus 327 ~~~~~~~~~~~~~~~~G~F~~~~ls~-----------~~~~~L~~~~~V~~~~g~----------Ri~~a~l~~~~i~~l 385 (394)
T d2ay1a_ 327 RDLSGSDRFGFVAEHRGMFSRLGATP-----------EQVKRIKEEFGIYMVGDS----------RINIAGLNDNTIPIL 385 (394)
T ss_dssp HHHHTSSTTTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTTC----------EEEGGGCCTTTHHHH
T ss_pred HHhCCCCceeeECCCceeEEecCcCH-----------HHHHHHHHhCCEEecCCC----------EEEecCCCHHHHHHH
Confidence 8863 566789999999987642 457888888899999862 999998888889988
Q ss_pred HHHHHHH
Q 046900 427 LKRIHNF 433 (442)
Q Consensus 427 l~~l~~~ 433 (442)
.++|.++
T Consensus 386 ~~ai~~v 392 (394)
T d2ay1a_ 386 ARAIIEV 392 (394)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888765
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=1.8e-40 Score=323.42 Aligned_cols=333 Identities=14% Similarity=0.167 Sum_probs=241.0
Q ss_pred CCceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCC--cc--hHHHHHHHHHHHHHHhCCCCccCCCc
Q 046900 47 PSGVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDY--HG--LKSFRQAMASFMEQIRGGRAKFDLNR 122 (442)
Q Consensus 47 ~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~--~g--~~~lr~~ia~~l~~~~~~~~~~~~~~ 122 (442)
|+-++|++.+++.+..+.+.+....... .. .| +. .+.|.-. .+ .++|+++|++++... | +..++..+
T Consensus 55 ~~~~~~~~~gdp~~~~~~w~~~~~~~~~--~~-~~---~~-~~sy~~~~~~~~~~~~L~~~i~~lh~~~-g-na~t~~~~ 125 (425)
T d2hoxa1 55 QGCSADVASGDGLFLEEYWKQHKEASAV--LV-SP---WH-RMSYFFNPVSNFISFELEKTIKELHEVV-G-NAAAKDRY 125 (425)
T ss_dssp TTCCEECCSCCCGGGHHHHTTSHHHHCE--EE-CT---TT-TCSSSCSSCCTTCCHHHHHHHHHHHHHH-T-CBCCTTCE
T ss_pred CCceeeCCCCCCCCCCHHHHhCcccceE--Ee-ec---cc-ccceecCCccccCCHHHHHHHHHHHhhh-C-CCCCCCCE
Confidence 5677899999988765554432222211 00 01 11 1223221 11 279999999987654 3 23345567
Q ss_pred EEEecChHHHHHHHHHhh--------cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHH
Q 046900 123 IVVTAGATAANELLTFIL--------ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEA 194 (442)
Q Consensus 123 i~~t~G~~~ai~~~~~~l--------~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~ 194 (442)
|++|+|++|+|.+++.+| ++|||+|+++.|+|+.|...++. .|.+.+. |.+|.+.++++++.
T Consensus 126 IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~-~~~~~~~--------~~~D~~~~~~~~~~- 195 (425)
T d2hoxa1 126 IVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKY-FDKKGYV--------WAGNAANYVNVSNP- 195 (425)
T ss_dssp EEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHH-SCBTTEE--------EEEEGGGGTTCSCG-
T ss_pred EEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHH-cCCCCCc--------cCCCHHHHHhhCCC-
Confidence 999999999999999999 56899999999999999998885 7765443 45667777665543
Q ss_pred HhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEe
Q 046900 195 ESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVY 274 (442)
Q Consensus 195 ~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~ 274 (442)
+++++++||||||||.+.. +..+++.+|.||+|.+..|.. +. . ..+++|+++
T Consensus 196 -----~~~ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~~-----~~---~-----~~~~~Ivl~ 247 (425)
T d2hoxa1 196 -----EQYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTP-----IK---Y-----KADEDILLF 247 (425)
T ss_dssp -----GGEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTSC-----CC---S-----CBCCSEEEE
T ss_pred -----CceEEEEECCCCCCcchhh----------hhhhCCEEEEeccccCccccc-----hh---h-----hcCCeEEEE
Confidence 8899999999999998742 234689999999997544432 11 1 247889999
Q ss_pred cCcccCCCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCch--------hHHHHHHHHHHHHHHHHH
Q 046900 275 SLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKK--------FTENYIKTNRERLQKRYQ 344 (442)
Q Consensus 275 S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~ 344 (442)
||||.||++|||+||++++++.+.+.+.+.... .+++.++|.++..+++... ...++.+..++.++++++
T Consensus 248 S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 327 (425)
T d2hoxa1 248 TMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWV 327 (425)
T ss_dssp EHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHH
T ss_pred eCHHhccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888888777655443 5678999999888886421 112356677889999999
Q ss_pred HHHHHHHhCCCee---------------ecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCC
Q 046900 345 MIIEGLRSAGIEC---------------LKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPG 409 (442)
Q Consensus 345 ~l~~~L~~~g~~~---------------~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~ 409 (442)
.+.+.|++.+... ..+..+.|+|+++... ..+.+.++++++||.++||+.|+. +++
T Consensus 328 ~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~--------~~~~~~~lL~e~gI~v~pGs~FG~-~~~ 398 (425)
T d2hoxa1 328 NITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE--------EDKDCYQTFQNGRINTQNGVGFEA-SSR 398 (425)
T ss_dssp HHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG--------GGCSHHHHHHHTTEECEEGGGGTS-CTT
T ss_pred HHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCC--------hHHHHHHHHHhCCEEEEechhcCC-CCC
Confidence 9999998764211 1233445788877542 223355566777999999999974 568
Q ss_pred EEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 410 WFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 410 ~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
|+|||+.. ++|++++++++|+++++.
T Consensus 399 yvRisl~~-~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 399 YVRLSLIK-TQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp EEEEECSS-CHHHHHHHHHHHHHHHTC
T ss_pred EEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 99999988 899999999999999863
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=1.3e-29 Score=243.83 Aligned_cols=284 Identities=9% Similarity=0.004 Sum_probs=194.6
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEc-CCCCcChHHhHhhhcCcEEEEEe
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVP-TPYYPGFDRDLRWRTGIKIVPIH 173 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~-~p~y~~~~~~~~~~~G~~v~~v~ 173 (442)
.+.+++++..+++++. ...+++++|+|+++++..++.+|..++|.|+++ .|+|+.+...++. .|++++..
T Consensus 50 ~~~~~l~~~~~~~~~~-------~~~e~~~~~~~~~~a~~~~l~al~~~~~vi~~~~~~~~~~~~~~~~l-~g~~~v~~- 120 (366)
T d2aeua1 50 YFAEKVNEYGLKHLGG-------DENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGHPSIERSCKI-VNAKYFES- 120 (366)
T ss_dssp HHHHHHHHHHHHHHTC-------CTTEEEEEESSHHHHHHHHHHHHCCSEEEEECSSSSCCTHHHHHHHH-TTCEEEEE-
T ss_pred hhHHHHHHHHHHHccC-------CCccEEEEeCCHHHHHHHHHHHhCCCCEEEEecCCCcchhHHHHHHh-cCCeEECC-
Confidence 4567788877777651 346789999999999999999987554544554 6899999999995 89986543
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
+ |+++|++++++ ++|+|++++|+||+ +++.+++++|+++|++||+++|+||+|+...++.....
T Consensus 121 -~-------d~e~l~~~i~~------~tk~i~~~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~ 184 (366)
T d2aeua1 121 -D-------KVGEILNKIDK------DTLVIITGSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQP 184 (366)
T ss_dssp -S-------CHHHHHTTCCT------TEEEEEECBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCC
T ss_pred -C-------CHHHHHHhcCC------CceEEEEEecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCccccccccccCC
Confidence 2 68999988865 89999999999986 46788999999999999999999999987666543333
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchh--HH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKF--TE 329 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~--~~ 329 (442)
+.... +..+++.|+||.+ +|+|+||++++ +.+.+.++..... +.++++.|.++...|+.... ++
T Consensus 185 ~~~~~---------~~di~~~S~sK~~--~g~~~G~i~~~-~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~ 252 (366)
T d2aeua1 185 PALKL---------GADLVVTSTDKLM--EGPRGGLLAGK-KELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIR 252 (366)
T ss_dssp CHHHH---------TCSEEEEETTSSS--SSCSCEEEEEE-HHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHH
T ss_pred CHhhc---------CceEEEecccccc--cccceeEEEec-HHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHH
Confidence 33333 2347889999976 68999999994 5666666544322 45678888888877764321 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-C--CeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSA-G--IECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCS 406 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~-g--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~ 406 (442)
++.+..++......+.+....... + .....+.+.+|+|........ ....+..+++.+|++++||.+.||..|+ .
T Consensus 253 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~Ll~~~gV~~ip~~~~p-~ 330 (366)
T d2aeua1 253 KAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDT-INIKKLIEIGFNLLKNYGIITITVAGMP-G 330 (366)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHH-HHHHHHHHHHHHHHHHHCEECSTTSSSC-S
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCccee-ecccCHHHHHHHHHHhCCEEEEECCCCC-C
Confidence 221111111111122222222221 2 222334556677776554321 1122467889999999999999999885 4
Q ss_pred CCCEEEEEeec
Q 046900 407 EPGWFRVCFAN 417 (442)
Q Consensus 407 ~~~~iRls~~~ 417 (442)
.++++|||++.
T Consensus 331 ~~~~lRis~~~ 341 (366)
T d2aeua1 331 ASKSLRIDLTS 341 (366)
T ss_dssp SCCSEEEETTS
T ss_pred CCCEEEEeccc
Confidence 56789999985
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=2.3e-27 Score=227.90 Aligned_cols=302 Identities=17% Similarity=0.223 Sum_probs=200.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCC
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDS 176 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~ 176 (442)
...+++.+|+|++ .+++++|+|+++|+.+++.+++++||.|+++.++|......+.. .|++++.+|+++
T Consensus 49 ~~~~~~~~A~~~g----------~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~-~g~~v~~v~~~~ 117 (364)
T d2e7ja1 49 HDFIHNQLPKFLG----------CDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAER-AGLNIALVPKTD 117 (364)
T ss_dssp HHHHHTHHHHHTT----------SSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHH-TTCEEEEECCCC
T ss_pred HHHHHHHHHHHhC----------cCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHHh-ccceEEEeeecc
Confidence 3557778888764 57899999999999999999999999999999999888888884 899999999987
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHH
Q 046900 177 SNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIA 256 (442)
Q Consensus 177 ~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~ 256 (442)
.+++.+|++.+++.+++..+ ..++++|++++|+||||.+.+ +++|+++|++||+++++|++|+...+ ..+..
T Consensus 118 ~~~~~i~~~~l~~~i~~~~k-~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~----~~~~~ 189 (364)
T d2e7ja1 118 YPDYAITPENFAQTIEETKK-RGEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM----PVSLK 189 (364)
T ss_dssp TTTCCCCHHHHHHHHHHHTT-TSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB----CCCHH
T ss_pred ccccccCHHHHHhhhhhhcc-cCCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhh----hhccc
Confidence 77889999999999987532 235678899999999999988 77889999999999999999974322 23444
Q ss_pred HHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc---------CCCcHHHHHHHHHHhcCchh
Q 046900 257 EILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF---------TLISSQTQYLLASMLSNKKF 327 (442)
Q Consensus 257 ~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~---------~~~s~~~q~~~~~~l~~~~~ 327 (442)
++. ..+++.|+||.+|.+| ++||++++++.+....+....+ .........++.+.+. .
T Consensus 190 ~~g---------~D~~~~S~~K~~~~~g-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~ 256 (364)
T d2e7ja1 190 EIG---------ADFIVGSGHKSMAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFP---H 256 (364)
T ss_dssp HHT---------CSEEEEEHHHHSSCCS-SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHH---H
T ss_pred ccc---------cceeeeccccccCCCC-CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHH---H
Confidence 442 2377899999998666 7999999544332222111111 0111122222222222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec--CCceEEEEEecCCccc--ccChhhHHHHHHHHHHcCcEEEeCCCCC
Q 046900 328 TENYIKTNRERLQKRYQMIIEGLRSAGIECLK--GNAGLFCWMNLSPLLE--EQTREGELALWDSMLHEVKLNISPGSSC 403 (442)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~gi~v~pg~~f 403 (442)
..++++...+.+ ++++++.+.|.+.|+.... +......++..+.... .........+...+ ...|+.... .
T Consensus 257 ~~~~~~~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~---~ 331 (364)
T d2e7ja1 257 VRERIKRWDEEV-EKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYREL-KSRKIHGIK---P 331 (364)
T ss_dssp HHHHGGGHHHHH-HHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHH-HHTTEECSC---T
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHcCCeecCCCCCCcceEEEeccchHHHHHHhhccchHHHHHH-HhcCCceec---C
Confidence 233333333333 4556778888888877653 2222233333322100 00000011223333 444765332 1
Q ss_pred CCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 046900 404 HCSEPGWFRVCFANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 404 ~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.....+|++....+++++++++++|+++++++
T Consensus 332 --g~~~~~~~~~~~~t~edid~~~~~l~ei~~~y 363 (364)
T d2e7ja1 332 --GLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 363 (364)
T ss_dssp --TCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred --CCcceEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 12356777754348999999999999999875
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=4.1e-24 Score=205.75 Aligned_cols=296 Identities=11% Similarity=0.088 Sum_probs=212.1
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEE
Q 046900 93 DYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPI 172 (442)
Q Consensus 93 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v 172 (442)
...-+.+|++.+|+|++ .+..++++++..++..++.++..++|.|+++.-.|..+...++. .+.+++.+
T Consensus 81 ~~~~~~~lE~~LA~~~g----------~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~-~~~~~~~~ 149 (383)
T d1bs0a_ 81 YSVVHQALEEELAEWLG----------YSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASL-SPSQLRRF 149 (383)
T ss_dssp CCHHHHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHT-SSSEEEEE
T ss_pred cchHHHHHHHHHHHhcC----------CCceEEecccchhhHHHHHhhcCCCceEEeeccccHHHhhcccc-CCCcceEe
Confidence 33445788888888875 67888999999999999999999999999999999999888885 88998888
Q ss_pred ecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 173 HCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 173 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
+. .|++++++.+.+. ..+.++|+++.+++++|.+.+ +.+|+++|++||+++++||+|+..+++.. .
T Consensus 150 ~h-------nd~~~le~~l~~~---~~~~~~vv~e~v~s~~G~i~p---l~~l~~l~~~~~~~livDeah~~gv~G~~-g 215 (383)
T d1bs0a_ 150 AH-------NDVTHLARLLASP---CPGQQMVVTEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQ-G 215 (383)
T ss_dssp CT-------TCHHHHHHHHHSC---CSSCEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGG-G
T ss_pred cc-------hHHHHHHHHhccc---CCCceEEEecCCCCCCCcccc---hhHHHHHHHhcCcEEEeecceeeeecCCc-c
Confidence 74 4789999988753 335567788888999999999 66777888899999999999998777543 2
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc----CCCcHHHHHHHHHHhcCchhH
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF----TLISSQTQYLLASMLSNKKFT 328 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~ 328 (442)
....+... ....+++.|+||++|.+| |++.+ +..+.+.++..... ...+++...++.+.++-..
T Consensus 216 ~G~~~~~~------~~~~~~~~t~~ka~g~~G---g~v~~-~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~-- 283 (383)
T d1bs0a_ 216 RGSCWLQK------VKPELLVVTFGKGFGVSG---AAVLC-SSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIR-- 283 (383)
T ss_dssp CCHHHHTT------CCCSEEEEESSSTTSSCC---EEEEE-CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH--
T ss_pred cchHHHcC------Cccccccccccccccccc---ccccc-chhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHH--
Confidence 22333322 234456789999999887 99988 56677777654332 2223333333333332110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCC-CCC
Q 046900 329 ENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCH-CSE 407 (442)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~-~~~ 407 (442)
.......++++.++..++.+.|.+.|+.+....+. .+.+.+.. ...+.++.+.|+++ ||.+.+..... +.+
T Consensus 284 ~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~s~-Ii~v~~g~------~~~a~~~~~~L~~~-Gi~v~~~~~PtVp~g 355 (383)
T d1bs0a_ 284 SDEGDARREKLAALITRFRAGVQDLPFTLADSCSA-IQPLIVGD------NSRALQLAEKLRQQ-GCWVTAIRPPTVPAG 355 (383)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTSSCEECSCCSS-BCCEEEES------HHHHHHHHHHHHHT-TEECCEECTTSSCTT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCccCCCCCC-EEEEEECC------HHHHHHHHHHHHHC-CceEEEEcCCCCCCC
Confidence 11234567788888999999999989887665554 22222222 12467888999877 99998743211 123
Q ss_pred CCEEEEEee-cCCHHHHHHHHHHHHHH
Q 046900 408 PGWFRVCFA-NMSEQTLEVALKRIHNF 433 (442)
Q Consensus 408 ~~~iRls~~-~~~~e~i~~~l~~l~~~ 433 (442)
...+||++. ..++|+++++++.|..+
T Consensus 356 ~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 356 TARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp CEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 456999997 44899999999998764
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.93 E-value=4.5e-24 Score=204.55 Aligned_cols=297 Identities=12% Similarity=0.064 Sum_probs=209.6
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh--cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEe
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL--ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIH 173 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~ 173 (442)
-+.+|++.+|+|++ .+..++++.+..++..++.+| ..++|.|+.+.-.|......++. .+++++.++
T Consensus 91 ~h~~LE~~lA~~~g----------~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~l-s~a~~~~f~ 159 (396)
T d2bwna1 91 YHRRLEAEIAGLHQ----------KEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKR-NAGPKRIFR 159 (396)
T ss_dssp HHHHHHHHHHHHTT----------CSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHH-SCCCEEEEC
T ss_pred HHHHHHHHHHHHhC----------CCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhc-cccCceEee
Confidence 45788888888875 677888888888998888887 46889999999999999899885 899988887
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
.+ |++++++.++... ..+.++|++..-.+.+|.+.| +.+|+++|++||+++++||+|+..+++... .
T Consensus 160 Hn-------d~~~l~~l~~~~~--~~~~~~iv~egvySmdGd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G-~ 226 (396)
T d2bwna1 160 HN-------DVAHLRELIAADD--PAAPKLIAFESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRG-A 226 (396)
T ss_dssp TT-------CHHHHHHHHHHSC--TTSCEEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTS-C
T ss_pred cc-------hHHHhhhHHhhhc--ccCceeEEEEeeccCcccccc---cHhHHHHhhhhcceeeeccceeeeeecccc-c
Confidence 53 6788888776532 224456666677899999999 778888888999999999999987775432 2
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc----CCCcHHHHHHHHHHhcCchhHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF----TLISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~ 329 (442)
.+.....- .....++++||||+||..| ||+++ ++.+++.++..... ...++....++.+.++-.. .
T Consensus 227 G~~~~~~~----~~~~di~~gTlsKa~g~~G---g~v~~-~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~--~ 296 (396)
T d2bwna1 227 GVAERDGL----MHRIDIFNGTLAKAYGVFG---GYIAA-SARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK--T 296 (396)
T ss_dssp CHHHHHTC----GGGCSEEEEESSSTTCSCC---EEEEE-CHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT--S
T ss_pred cchhhcCC----ceeeeeeeecccccccccc---cccch-hHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhh--c
Confidence 23322211 1245688999999999888 99888 67777777654332 2233333333333332111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC-CCC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC-SEP 408 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~-~~~ 408 (442)
+..++.++.++.+.+++.+.|.+.|+.+...++. .+.+.+... ..+.+++++|++++||.+.+...... .+.
T Consensus 297 ~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~sp-Ivpv~ig~~------~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~ 369 (396)
T d2bwna1 297 AEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSH-IVPVVIGDP------VHTKAVSDMLLSDYGVYVQPINFPTVPRGT 369 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSS-CEEEECCCH------HHHHHHHHHHHHHHCEECCEECTTTSCTTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCC-EEEEEeCCH------HHHHHHHHHHHHhCCEEEEEECCCcCCCCC
Confidence 1134567777888888989998888887665544 343444331 23678888888766999876433221 234
Q ss_pred CEEEEEee-cCCHHHHHHHHHHHHHH
Q 046900 409 GWFRVCFA-NMSEQTLEVALKRIHNF 433 (442)
Q Consensus 409 ~~iRls~~-~~~~e~i~~~l~~l~~~ 433 (442)
..+||++. ..++++|+++++.|+++
T Consensus 370 ~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 370 ERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp CEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred eeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 57999986 34899999999999876
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=6.8e-24 Score=205.29 Aligned_cols=301 Identities=16% Similarity=0.103 Sum_probs=217.7
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEec
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHC 174 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~ 174 (442)
.-+.+|.+.+|+|++ .+.+++++++++++..++.+++.++|.|+++.-+|..+...+.. .++++..++.
T Consensus 90 ~~~~~lE~~lA~~~g----------~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~-~~a~~~~~~~ 158 (401)
T d1fc4a_ 90 DSHKELEQKLAAFLG----------MEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRL-CKAKRYRYAN 158 (401)
T ss_dssp HHHHHHHHHHHHHHT----------CSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHT-SCSEEEEECT
T ss_pred HHHHHHHHHHHHhhc----------CCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHccccc-cCceEEEEcC
Confidence 345688888888875 67899999999999999999999999999999999999888885 8888887764
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s 254 (442)
.|.+++++.+......+....+|++....+..|.+.+ +.++.++|++||+++|+||+|+.++++.... .
T Consensus 159 -------~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~G~-G 227 (401)
T d1fc4a_ 159 -------NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGR-G 227 (401)
T ss_dssp -------TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSC-C
T ss_pred -------CChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh---hhHHHHHHhhcCcEEEehhhhccccccCCCC-c
Confidence 4778888888776655555556666666778888887 7888888999999999999999888764322 2
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc-c---CCCcHHHHHHHHHHhcCchhHHH
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS-F---TLISSQTQYLLASMLSNKKFTEN 330 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~-~---~~~s~~~q~~~~~~l~~~~~~~~ 330 (442)
....... ..+..++++||||++| |...|++.+ ++.+++.++.... + ...++....++...++.. .
T Consensus 228 ~~~~~~~----~~~~dii~~tl~Ka~g--g~~Gg~v~g-~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~----~ 296 (401)
T d1fc4a_ 228 SHEYCDV----MGRVDIITGTLGKALG--GASGGYTAA-RKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV----E 296 (401)
T ss_dssp HHHHTTC----TTCCSEEEEESSSTTC--SSSCEEEEE-CHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH----H
T ss_pred cchhccC----CCCCeEEEeecccccc--cCCcccccC-CHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhccc----c
Confidence 3222211 1345578999999984 444588888 6777777664332 1 234444444444444321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCC--CCCC
Q 046900 331 YIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCH--CSEP 408 (442)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~--~~~~ 408 (442)
..++.+++++++.+++.+.+.+.|+.+..+++. .+.+.+.+. ..+.+++++|+++ ||.+.+- .|. +.+.
T Consensus 297 ~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~~p-Iv~v~~~~~------~~a~~~~~~L~~~-Gi~v~~i-~~PtVp~g~ 367 (401)
T d1fc4a_ 297 AGSELRDRLWANARQFREQMSAAGFTLAGADHA-IIPVMLGDA------VVAQKFARELQKE-GIYVTGF-FYPVVPKGQ 367 (401)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTCCBCCSSSS-EEEEEEECH------HHHHHHHHHHHHT-TEECCEE-CTTSSCTTC
T ss_pred cCHHHHHHHHHHHHHHHhhhcccCCccCCCCCC-EEEEEECCH------HHHHHHHHHHHHC-CceEEeE-CCCCCCCCC
Confidence 135667888899999999999988887766665 333333331 2366788898777 9998763 222 1234
Q ss_pred CEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 409 GWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 409 ~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
..+|+++. ..++|+++++++.|+++.+++
T Consensus 368 ~~lRi~~~a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 368 ARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 56999986 459999999999999998775
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=3.7e-24 Score=207.51 Aligned_cols=297 Identities=16% Similarity=0.206 Sum_probs=196.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh----cCCCCeEEEcCCCCcChHHhHhh--hcCcEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL----ADPGDALLVPTPYYPGFDRDLRW--RTGIKIV 170 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l----~~~gd~Vl~~~p~y~~~~~~~~~--~~G~~v~ 170 (442)
+.++|+.+|++++ +++++|++|+|+++++..++.++ .++||.|++.++.|+.+...++. ..|+++.
T Consensus 50 ~~~~R~~iA~~lg--------~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~ 121 (391)
T d1p3wa_ 50 VDIARNQIADLVG--------ADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVT 121 (391)
T ss_dssp HHHHHHHHHHHHT--------CCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHcC--------CCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEE
Confidence 3467888888876 78999999999999999888765 47999999999999887654431 2699999
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
.+|.+.. ..+|++.+++++++ +|++|++++|+||||.+++ +++|+++|+++|+++++|.+|+....
T Consensus 122 ~v~~~~~--~~~d~~~~~~~i~~------~T~lv~is~~~n~tG~~~~---~~~I~~~~~~~~~~~ivD~~~~~g~~--- 187 (391)
T d1p3wa_ 122 YLAPQRN--GIIDLKELEAAMRD------DTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKL--- 187 (391)
T ss_dssp EECCCTT--SCCCHHHHHHHCCT------TEEEEECCSBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTBTTB---
T ss_pred EeCCCCC--CeEcHHHHHHhCCC------CcEEEEEECCCCCCeeECC---HHHHHHHhccCCcEEEEeeccccCCc---
Confidence 9998754 35899999999865 8999999999999999999 66788899999999999999985322
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--------ccccCCCcHHHHHHHHHHh
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--------MSSFTLISSQTQYLLASML 322 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--------~~~~~~~s~~~q~~~~~~l 322 (442)
...+... +..+++.|.+|.+|.+| +|+++..+..+...... ....+..+.....++...+
T Consensus 188 -~~d~~~~---------~~D~~~~s~~k~~g~~g--~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~ 255 (391)
T d1p3wa_ 188 -PIDLSQL---------KVDLMSFSGHKIYGPKG--IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAY 255 (391)
T ss_dssp -CCCTTTS---------CCSEEEEESTTTTSCSS--CEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHH
T ss_pred -cccchhc---------cccccccccccccCCCc--eEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhh
Confidence 1122212 23367789999998776 57777643321111000 0111222333333333332
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeee-c--CC-ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe
Q 046900 323 SNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECL-K--GN-AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS 398 (442)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~--~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~ 398 (442)
. ...+......+++++.++.+.+.|.+.+.... . +. ....+.+.++.. ....+...+ .++.++
T Consensus 256 ~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l---~~i~v~ 322 (391)
T d1p3wa_ 256 R---IAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV-------EGESLIMAL---KDLAVS 322 (391)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTS-------CHHHHHHHT---TTEECB
T ss_pred h---HHHHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCC-------ChHHHHHHh---CCCEEE
Confidence 2 11233444556677777888888876632222 1 11 122222333332 134455444 378887
Q ss_pred CCCCCCCCC-----------------CCEEEEEeecC-CHHHHHHHHHHHHHHHHHHHhh
Q 046900 399 PGSSCHCSE-----------------PGWFRVCFANM-SEQTLEVALKRIHNFMQKRERR 440 (442)
Q Consensus 399 pg~~f~~~~-----------------~~~iRls~~~~-~~e~i~~~l~~l~~~l~~~~~~ 440 (442)
.|..|.... .+++|+|++.. +++|++.+++.|+++++++++.
T Consensus 323 ~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~ 382 (391)
T d1p3wa_ 323 SGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDL 382 (391)
T ss_dssp CCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 776553210 25799999722 7899999999999999998764
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.92 E-value=1.8e-24 Score=208.90 Aligned_cols=290 Identities=18% Similarity=0.242 Sum_probs=189.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHh----HhhhcCcEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRD----LRWRTGIKIVP 171 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~----~~~~~G~~v~~ 171 (442)
..++|+.+|++++ +++++|++|+|+|+++.+++.++ .++||.|+++.+.|+..... .+ ..|+++..
T Consensus 52 ~~~~r~~la~~~~--------~~~~~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~-~~g~~~~~ 122 (381)
T d1elua_ 52 IAQLRQALAETFN--------VDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAA-RFGITYRF 122 (381)
T ss_dssp HHHHHHHHHHHTT--------SCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHH-HHCCEEEE
T ss_pred HHHHHHHHHHHhC--------CCcccEEEECChHHHhhhcchhhhhcCCceEEEeccccceeeeccccccc-cccccccc
Confidence 3456777777764 67899999999999999999988 67999999999999865443 33 37999999
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHh----cCcEEEEeccCCcCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATR----KNIHLVSDEIYSGSAF 247 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~----~~~~vi~De~y~~~~~ 247 (442)
+|.+.......+.+.+++.+. ++++++++++|+||||.+++.+ +|.++|++ +++++++|.+++...
T Consensus 123 v~~~~~~~~~~~~~~l~~~i~------~~t~~v~i~~~~n~tG~~~~~~---~I~~l~~~~~~~~~~~~~vD~~~~~g~- 192 (381)
T d1elua_ 123 FPVAATLNQGDAAAVLANHLG------PKTRLVILSHLLWNTGQVLPLA---EIMAVCRRHQGNYPVRVLVDGAQSAGS- 192 (381)
T ss_dssp ECCGGGSSSSCHHHHHHTTCC------TTEEEEEEESBCTTTCCBCCHH---HHHHHHHHCCSSSCCEEEEECTTTBTT-
T ss_pred cccccccccchHHHHHHhhhc------ccccccccccccccccccchhh---HHHHHHhhccccccccccccccccccc-
Confidence 987654322222444544443 4899999999999999999954 55666655 469999999988422
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc-----------------------
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM----------------------- 304 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~----------------------- 304 (442)
.+..+..+ +..+++.|++|.++ ...++|+++..+... +.+...
T Consensus 193 ---~~~~~~~~---------~~D~~~~s~~K~~~-~p~G~g~l~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 258 (381)
T d1elua_ 193 ---LPLDFSRL---------EVDYYAFTGHKWFA-GPAGVGGLYIHGDCL-GEINPTYVGWRSITYGAKGEPTGWAEGGK 258 (381)
T ss_dssp ---BCCCTTTS---------CCSEEEEESSSTTC-CCTTCEEEEECTTTG-GGCCCCSCCTTTEEECTTSCEEEECSGGG
T ss_pred ---cccccccc---------cccccccccccccc-ccchhhHHHhhHHHH-HhcCccccccccccccccccccccccccc
Confidence 12222211 33477899999986 445678888744322 221100
Q ss_pred -cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec---CCceEEEEEecCCcccccCh
Q 046900 305 -SSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK---GNAGLFCWMNLSPLLEEQTR 379 (442)
Q Consensus 305 -~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~---~~~g~~~~~~~~~~~~~~~~ 379 (442)
...+..+.....++.+.++.... .-..+...++.+++++++.+.|++. |+++.. +.++ ++++.++...
T Consensus 259 ~~~~gt~~~~~~~~~~~a~~~~~~-~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~vsf~~~~~~----- 331 (381)
T d1elua_ 259 RFEVATSAYPQYAGLLAALQLHQR-QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAG-LVSFTVDSPL----- 331 (381)
T ss_dssp GGCCSCCCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSS-EEEEEECSSS-----
T ss_pred ccccccccchhhhhhhhhhhhHHH-hcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCcccc-EEEEEcCCCC-----
Confidence 00112333333333333331110 0012334567777888999999887 777653 4555 5555555432
Q ss_pred hhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeecC-CHHHHHHHHHHHHHH
Q 046900 380 EGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFANM-SEQTLEVALKRIHNF 433 (442)
Q Consensus 380 ~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~~-~~e~i~~~l~~l~~~ 433 (442)
...++.+.|.+ +||.++.. ..++++|+|++.. ++++++++++.|+++
T Consensus 332 -~~~~i~~~L~~-~gi~v~~~-----~~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 332 -GHRAIVQKLEE-QRIYLRTI-----ADPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp -CHHHHHHHHHH-TTEECEEE-----TTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred -CHHHHHHHHHh-CCcEEEec-----CCCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 24566666654 59988642 2368999998722 789999999999864
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=4.3e-24 Score=202.06 Aligned_cols=335 Identities=12% Similarity=0.110 Sum_probs=213.6
Q ss_pred eeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecCh
Q 046900 50 VIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGA 129 (442)
Q Consensus 50 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~ 129 (442)
+|||.+..-.-|.+.+.+++.+... ....|++.....+|++.+|++++ .+++++++|+
T Consensus 1 ~~~~~~~~~t~p~p~v~~A~~~a~~------------g~~~yg~~p~~~~le~~lA~~~G----------~~~~~~~~sG 58 (343)
T d1m6sa_ 1 MIDLRSDTVTKPTEEMRKAMAQAEV------------GDDVYGEDPTINELERLAAETFG----------KEAALFVPSG 58 (343)
T ss_dssp CEECSCGGGCCCCHHHHHHHHTCCC------------CCGGGTCCHHHHHHHHHHHHHTT----------CSEEEEESCH
T ss_pred CcccccccCCCCCHHHHHHHHhhhc------------CCcccCCCHHHHHHHHHHHHHHC----------CCeEEEeCCH
Confidence 4788665544455666777665431 12347666678899999999875 4578999999
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCCcChHH---hHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEE
Q 046900 130 TAANELLTFILADPGDALLVPTPYYPGFDR---DLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLI 206 (442)
Q Consensus 130 ~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~---~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 206 (442)
++|+.+++.++..+||.+++..+.+..+.. ... ..+..+..++.+. ...|++.+++.+........++..+++
T Consensus 59 t~A~~~al~a~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~ 134 (343)
T d1m6sa_ 59 TMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAV-LSGVMPHPVPGKN---GAMDPDDVRKAIRPRNIHFPRTSLIAI 134 (343)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHH-HTCCEEEEECEET---TEECHHHHHHHSCCSCTTSCCEEEEEE
T ss_pred HHHHHHHHHHHhccCCceeccccccceeeecccccc-cccceeecccccc---CccCHHHHHHhhhhhhccccccccccc
Confidence 999999999999999999999998765443 222 2456666665442 346899999888754444445555544
Q ss_pred e-CCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCc
Q 046900 207 T-NPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGF 285 (442)
Q Consensus 207 ~-~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~ 285 (442)
. .++|++|.+++.+++.+|+++|+++++++++|++|..+...... ........ .....+.+.+| +..|.
T Consensus 135 ~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~--~~~g~ 204 (343)
T d1m6sa_ 135 ENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASG-VPVKEYAG-------YADSVMFCLSK--GLCAP 204 (343)
T ss_dssp ESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHC-CCHHHHHH-------TCSEEEEESSS--TTCCS
T ss_pred ccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccc-cchhhhcc-------ccccccccccc--ccccc
Confidence 4 56889999999999999999999999999999999864433221 12222222 12233333333 34566
Q ss_pred eeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCc
Q 046900 286 RVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNA 362 (442)
Q Consensus 286 RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 362 (442)
+.|+++. .............. +..+.....++........ .....+.+.+++..+.+.+.+. +.....+..
T Consensus 205 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (343)
T d1m6sa_ 205 VGSVVVG-DRDFIERARKARKMLGGGMRQAGVLAAAGIIALTK-----MVDRLKEDHENARFLALKLKEIGYSVNPEDVK 278 (343)
T ss_dssp SCEEEEE-CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHH-----SSTTHHHHHHHHHHHHHHHHHHTCBCCGGGCC
T ss_pred ccccccc-cHHHHhhhHhhCcccccccchhHHHHHhhhhhhhh-----hHHHHHHHHHHHHHhhhHHHHhccCccCCCCC
Confidence 6788887 44444333322221 2222222222222111110 0111222334444455555443 333334455
Q ss_pred eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHH
Q 046900 363 GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 363 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
++++|++++.... .+.++++.|.++ ||.+.|. ++.++||+++ ..++|++++++++|++++++++
T Consensus 279 ~~~v~~~~~~~~~-----~a~~l~~~L~~~-Gi~v~~~------~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~~ 343 (343)
T d1m6sa_ 279 TNMVILRTDNLKV-----NAHGFIEALRNS-GVLANAV------SDTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS 343 (343)
T ss_dssp SSEEEEECTTSSS-----CHHHHHHHHHHH-TEECEEE------ETTEEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEeCCCcc-----cHHHHHHHHHHC-CCEEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 6689998875321 367899999887 9999873 3468999886 3489999999999999999863
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.6e-20 Score=182.40 Aligned_cols=295 Identities=16% Similarity=0.206 Sum_probs=204.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHh----hcCCCCeEEEcCCCCcChHHhHhh---hcCcEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFI----LADPGDALLVPTPYYPGFDRDLRW---RTGIKI 169 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~----l~~~gd~Vl~~~p~y~~~~~~~~~---~~G~~v 169 (442)
+.+.|+.+|++++. .++++|++|+|+|+++..++.+ ...+||.|++..-.|+.....++. ..|+++
T Consensus 68 ~e~~R~~ia~~l~~-------~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v 140 (405)
T d1jf9a_ 68 MENVRKRASLFINA-------RSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAEL 140 (405)
T ss_dssp HHHHHHHHHHHTTC-------SCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHcCC-------CCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEE
Confidence 45677888888751 2468999999999999988765 357899999999999885544421 379999
Q ss_pred EEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCC
Q 046900 170 VPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSS 249 (442)
Q Consensus 170 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~ 249 (442)
..+|+++++ .+|++.+++.+.+ +|++++++..+|.||.++| +++|.++|+++|+++++|.+++. +
T Consensus 141 ~~~~~~~~g--~~~~~~~~~~i~~------~t~lv~~~~v~~~tG~~~p---i~~i~~~~~~~g~~~~vD~~q~~----g 205 (405)
T d1jf9a_ 141 RVIPLNPDG--TLQLETLPTLFDE------KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAV----M 205 (405)
T ss_dssp EEECBCTTS--CBCGGGHHHHCCT------TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTT----T
T ss_pred EEECCCCCC--cCCHHHHHHhccC------CcEEEEEecCCCcccccCc---hHHhhhHHHHcCCeeecccceec----c
Confidence 999998755 5788899887764 8999999999999999999 77888899999999999999884 3
Q ss_pred CCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc------------------------
Q 046900 250 SEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS------------------------ 305 (442)
Q Consensus 250 ~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~------------------------ 305 (442)
.....+..+..+ +++.|++|.+|.+| +|+++. ++.+.+.+....
T Consensus 206 ~~~id~~~~~~D---------~~~~s~hK~~Gp~G--~g~l~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 273 (405)
T d1jf9a_ 206 HHPVDVQALDCD---------FYVFSGHKLYGPTG--IGILYV-KEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRF 273 (405)
T ss_dssp TSCCCHHHHTCS---------EEEEEGGGTTSCSS--CEEEEE-CHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGG
T ss_pred ccccchhhcCCc---------eeeccccccccCCC--ceeeee-chhhhcccCcccccccccCccccccccccccchhhh
Confidence 334456655443 78899999988666 688888 444433211100
Q ss_pred ccCCCcHHHHHHHHHHhcCchhHHH-HHHHHHHHHHHHHHHHHHHHHhCCC-eeecC--CceEEEEEecCCcccccChhh
Q 046900 306 SFTLISSQTQYLLASMLSNKKFTEN-YIKTNRERLQKRYQMIIEGLRSAGI-ECLKG--NAGLFCWMNLSPLLEEQTREG 381 (442)
Q Consensus 306 ~~~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~--~~g~~~~~~~~~~~~~~~~~~ 381 (442)
..++.+.....++...++ +..+ .++...+......+++.+.++..+. ....+ .++ .+.+.++.. .
T Consensus 274 e~GT~~~~~~~~l~~al~---~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~-ivsf~~~~~-------~ 342 (405)
T d1jf9a_ 274 EAGTPNTGGIIGLGAALE---YVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLG-VIAFNLGKH-------H 342 (405)
T ss_dssp CCSSCCHHHHHHHHHHHH---HHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCS-EEEEEETTC-------C
T ss_pred cCCCCcHHHHHHHHHHHH---HHHHhChHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCc-EEEEEcCCC-------C
Confidence 012334444444444443 2111 2344555555556677777776643 33332 244 444566542 2
Q ss_pred HHHHHHHHHHcCcEEEeCCCCCCC------CCCCEEEEEeecC-CHHHHHHHHHHHHHHHHHH
Q 046900 382 ELALWDSMLHEVKLNISPGSSCHC------SEPGWFRVCFANM-SEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 382 ~~~l~~~l~~~~gi~v~pg~~f~~------~~~~~iRls~~~~-~~e~i~~~l~~l~~~l~~~ 437 (442)
..++...| +++||.++.|+.+.. ..++++|+|++.. +++|++.+++.|+++.+-+
T Consensus 343 ~~~~~~~L-~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~~ 404 (405)
T d1jf9a_ 343 AYDVGSFL-DNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 404 (405)
T ss_dssp HHHHHHHH-HHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 45566665 556999998876532 2357899999822 8899999999999887643
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.85 E-value=2.9e-19 Score=173.48 Aligned_cols=294 Identities=15% Similarity=0.193 Sum_probs=204.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCccC-CCcEEEecChHHHHHHHHHh----hcCCCCeEEEcCCCCcChHHhHhh---hcCcE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFD-LNRIVVTAGATAANELLTFI----LADPGDALLVPTPYYPGFDRDLRW---RTGIK 168 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~-~~~i~~t~G~~~ai~~~~~~----l~~~gd~Vl~~~p~y~~~~~~~~~---~~G~~ 168 (442)
+++.|+.+|++++ ++ ++.|++++++++++.+++.. -.++||+|++.+-.|+.....++. ..|++
T Consensus 68 ~e~aR~~ia~llg--------a~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~ 139 (408)
T d1t3ia_ 68 YEAVRNKVAKFIN--------ARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAV 139 (408)
T ss_dssp HHHHHHHHHHHTT--------CSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHhC--------CCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCce
Confidence 3467777888765 55 57899999999999988765 356899999999899876544321 36999
Q ss_pred EEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCC
Q 046900 169 IVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFS 248 (442)
Q Consensus 169 v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~ 248 (442)
+..+|.+..+ ..+.+.+++.+.+ ++++|.++.-+|-||..++ +++|.++|+++|+++++|.+++.
T Consensus 140 v~~~~~~~~~--~~~~~~l~~~~~~------~t~lv~i~~~~~~tG~~~p---~~~i~~~~~~~g~~~ivDa~q~~---- 204 (408)
T d1t3ia_ 140 LKFVQLDEQE--SFDLEHFKTLLSE------KTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSA---- 204 (408)
T ss_dssp EEEECBCTTS--SBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTT----
T ss_pred Eeeeeccccc--cccHHHhhhccCC------CceEEEEecccccccccCc---HHHHhhhhhccCceeeeccceec----
Confidence 9999987644 4678888888754 8999999999999999999 67788889999999999999874
Q ss_pred CCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc-----------------------
Q 046900 249 SSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS----------------------- 305 (442)
Q Consensus 249 ~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~----------------------- 305 (442)
+.....+..+..+ +++.|..|.+|.+| +|+++. ++..........
T Consensus 205 g~~~id~~~~~~D---------~~~~s~hK~~gp~G--~g~l~v-~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~ 272 (408)
T d1t3ia_ 205 PHYPLDVQLIDCD---------WLVASGHKMCAPTG--IGFLYG-KEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKF 272 (408)
T ss_dssp TTSCCCHHHHTCS---------EEEEEGGGTTSCTT--CEEEEE-CHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGG
T ss_pred ccccccccccCCc---------eEEeccccccCCCC--cccccc-chhhhhcCCceecCCcccccccccccccCCchhhh
Confidence 3334566655443 77899999887555 688888 444443321100
Q ss_pred ccCCCcHHHHHHHHHHhcCchhHHH-HHHHHHHHHHHHHHHHHHHHHhC-CCeeecC------CceEEEEEecCCccccc
Q 046900 306 SFTLISSQTQYLLASMLSNKKFTEN-YIKTNRERLQKRYQMIIEGLRSA-GIECLKG------NAGLFCWMNLSPLLEEQ 377 (442)
Q Consensus 306 ~~~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~------~~g~~~~~~~~~~~~~~ 377 (442)
..++.+.+...++...++ ++.+ .+++.+++..+..+++.+.+.+. ++.+..+ .++ .+.+.++..
T Consensus 273 e~Gt~~~~~~~~l~~al~---~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-iv~f~~~~~---- 344 (408)
T d1t3ia_ 273 EAGTPAIAEAIALGAAVD---YLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAA-LASFNVAGL---- 344 (408)
T ss_dssp CCSSCCHHHHHHHHHHHH---HHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCS-EEEEEETTB----
T ss_pred cCCcHHHHHHHHHHHHHH---HHHHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcce-EEEEEeCCC----
Confidence 012334444444444443 2121 23455566666777788888776 4554421 133 444455542
Q ss_pred ChhhHHHHHHHHHHcCcEEEeCCCCCCC------CCCCEEEEEeecC-CHHHHHHHHHHHHHHHHHH
Q 046900 378 TREGELALWDSMLHEVKLNISPGSSCHC------SEPGWFRVCFANM-SEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 378 ~~~~~~~l~~~l~~~~gi~v~pg~~f~~------~~~~~iRls~~~~-~~e~i~~~l~~l~~~l~~~ 437 (442)
+..++...| .++||.++.|+.|.. ..++++|||+... +++|++++++.|+++++..
T Consensus 345 ---~~~~v~~~L-~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~f 407 (408)
T d1t3ia_ 345 ---HASDVATMV-DQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 407 (408)
T ss_dssp ---CHHHHHHHH-HTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHH-hhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 245666666 556999998887642 2357899999822 8999999999999998753
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=2.7e-20 Score=179.04 Aligned_cols=296 Identities=14% Similarity=0.156 Sum_probs=186.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHh----hcCCCCeEEEcCCCCcChHHhHhh--hcCcEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFI----LADPGDALLVPTPYYPGFDRDLRW--RTGIKIV 170 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~----l~~~gd~Vl~~~p~y~~~~~~~~~--~~G~~v~ 170 (442)
+.+.|+++|++++ +++++|++++|+|+++..++.+ ...+|+.|++....|+.+....+. ..|++++
T Consensus 46 ~~~aR~~ia~l~~--------~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~ 117 (376)
T d1eg5a_ 46 MEKAREKVAKVLG--------VSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVK 117 (376)
T ss_dssp HHHHHHHHHHHHT--------SCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHcC--------CCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEE
Confidence 4466888888876 7899999999999999998754 456788888888888776654431 3699999
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
.+|++++ ..+|++++++++++ ++++++++.++|+||...+.+++.++++.. ..++++++|.+++....
T Consensus 118 ~vp~~~~--~~id~~~l~~~i~~------~t~lv~is~v~~~tG~~~~~~~i~~~~~~~-~~~~~~~vD~~q~~g~~--- 185 (376)
T d1eg5a_ 118 YVPVDSR--GVVKLEELEKLVDE------DTFLVSIMAANNEVGTIQPVEDVTRIVKKK-NKETLVHVDAVQTIGKI--- 185 (376)
T ss_dssp ECCBCTT--SCBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCCHHHHHHHHHHH-CTTCEEEEECTTTTTTS---
T ss_pred EEcCCCC--CeECHHHHHHhcCC------CceEEEEECCccccceeeeehhhhhhhhhc-ccCceeEEEeeeccccc---
Confidence 9999864 46999999999875 999999999999999999966666555433 44899999999874221
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHH-----HccccCCCcHHHHHHHHHHhcCc
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTAR-----RMSSFTLISSQTQYLLASMLSNK 325 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~-----~~~~~~~~s~~~q~~~~~~l~~~ 325 (442)
+..+..+ +..++++|++|.+|.+|..+.|+-- ...+..... .....+..+..............
T Consensus 186 -~~d~~~~---------~~D~~~~s~~K~~gp~G~~~l~~~~-~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (376)
T d1eg5a_ 186 -PFSLEKL---------EVDYASFSAHKFHGPKGVGITYIRK-GVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA 254 (376)
T ss_dssp -CCCCTTT---------CCSEEEEEGGGGTSCTTCEEEEECT-TSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH
T ss_pred -ccccccc---------CccceecccceeecCCCceeEEecc-CcccCCcccCCCCcccccCCcccchhhhhHHHHhhcc
Confidence 2222212 3447889999999988877776532 111100000 00001112233333333322211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC----CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCC
Q 046900 326 KFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKG----NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGS 401 (442)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~ 401 (442)
..............++++.+.|.......... ..+ .+...++.. ....+...| +++||.+++|.
T Consensus 255 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~L-~~~gI~vr~G~ 322 (376)
T d1eg5a_ 255 ---VEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPN-TLSVSFPNI-------RGSTLQNLL-SGYGIYVSTSS 322 (376)
T ss_dssp ---HHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTT-EEEEECTTC-------CHHHHHHHH-HHTTEECBC--
T ss_pred ---ccchhhhhhhhhhhhhhhccccccccccccccccccccc-eeeeccCCC-------CHHHHHHHH-hhCCeEEeCcc
Confidence 11123334445555667777776654333221 111 222333332 245555554 56699999887
Q ss_pred CCCCCC-----------------CCEEEEEeecC-CHHHHHHHHHHHHHHHH
Q 046900 402 SCHCSE-----------------PGWFRVCFANM-SEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 402 ~f~~~~-----------------~~~iRls~~~~-~~e~i~~~l~~l~~~l~ 435 (442)
.+.... .+++|+|++.. +++|++++++.|++++.
T Consensus 323 ~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 323 ACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp ----------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 653211 24699999722 79999999999999876
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.84 E-value=4.4e-19 Score=173.86 Aligned_cols=322 Identities=16% Similarity=0.159 Sum_probs=210.3
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEE
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKI 169 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v 169 (442)
.|+......+|.+.+|++++ .+.++++++++.|+.+++.+++++||.|+.... |......+.. .|+..
T Consensus 70 ~Y~~dpt~~~lE~~~a~l~G----------~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~-f~~~~~~i~~-~g~~~ 137 (456)
T d1c7ga_ 70 AYAGSENFYHLEKTVKELFG----------FKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMY-FTTTRFHQEK-NGATF 137 (456)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CSEEEEESSHHHHHHHHHHHHCCTTEEEEESSC-CHHHHHHHHH-TTEEE
T ss_pred hccCCchHHHHHHHHHHHhC----------CCeEEECCCHHHHHHHHHHHhcCCCCeEecCcc-hHHHHHHHHH-cCcee
Confidence 47777788899999999986 567899999999999999999999999887664 3334444553 78887
Q ss_pred EEEecCC--------CCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC-CcCCCHHHHHHHHHHHHhcCcEEEEec
Q 046900 170 VPIHCDS--------SNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPL-GATIQRSVLEELLDFATRKNIHLVSDE 240 (442)
Q Consensus 170 ~~v~~~~--------~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPt-G~~~~~~~l~~l~~~~~~~~~~vi~De 240 (442)
+.+..+. ...+.+|++.|++.+++..+ ..+.++++.+|+|+. |.+++.+++++|.++|++||+.+++|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~--~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~ 215 (456)
T d1c7ga_ 138 VDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGA--ENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDA 215 (456)
T ss_dssp EECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred eeccccccccccccCCccccCCHHHHHHHhhhcCC--ccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEc
Confidence 7665432 12456899999999987532 256788999999985 688999999999999999999999999
Q ss_pred cCCcCC-------CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc-------c
Q 046900 241 IYSGSA-------FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS-------S 306 (442)
Q Consensus 241 ~y~~~~-------~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~-------~ 306 (442)
++.... ..+....++.++..+.. ..-. ++..|++|.++.++ .|+++.+++.+.+.++... .
T Consensus 216 a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~--~~ad-~~s~s~~K~~~~~~--GG~i~~~~~~l~~~~r~~~~~~~g~~~ 290 (456)
T d1c7ga_ 216 TRCVENAYFIKEQEAGYENVSIKDIVHEMF--SYAD-GCTMSGKKDCLVNI--GGFLCMNDEEMFSAAKELVVVYEGMPS 290 (456)
T ss_dssp TTHHHHHHHHHHHSTTCTTSCHHHHHHHHH--TTCS-EEEEETTTTTCCSS--CEEEEESCHHHHHHHHHHHHHHTCCTT
T ss_pred chhhcchhhhcccccccCCCChhhhccccc--cccc-cEEEeccccccccc--eeEEEcCCHHHHHHHHHhccccCCCcc
Confidence 964210 01112234444433210 0122 44569999987443 4888887777776655321 1
Q ss_pred cCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcc---cccChhhHH
Q 046900 307 FTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLL---EEQTREGEL 383 (442)
Q Consensus 307 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~ 383 (442)
.+..+.....+++..+..... .+++ +.-.++.++|.+.|.+.|+.+..|.++..++++..... ....+ ...
T Consensus 291 ~g~~~~~~~~a~a~~l~e~~~-~~~l----~~r~~~~~~L~e~L~~~g~~vv~p~g~~~v~vda~~~~~~i~~~~~-~~~ 364 (456)
T d1c7ga_ 291 YGGLAGRDMEAMAIGLREAMQ-YEYI----EHRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQF-PAQ 364 (456)
T ss_dssp TTTCCHHHHHHHHHHHHHHTC-HHHH----HHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHCTTSCGGGC-HHH
T ss_pred cchhhHHHHHHHHHHHHHhcC-HHHH----HHHHHHHHHHHHHHHhccCCcccCCCCcceeEechhhccCCCcccc-cHH
Confidence 122333323332222221110 1122 22234457888899999999988888888877643211 11111 245
Q ss_pred HHHHHHHHcCcEEEeCCCCC--CC---------CCCCEEEEEee--cCCHHHHHHHHHHHHHHHHH
Q 046900 384 ALWDSMLHEVKLNISPGSSC--HC---------SEPGWFRVCFA--NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 384 ~l~~~l~~~~gi~v~pg~~f--~~---------~~~~~iRls~~--~~~~e~i~~~l~~l~~~l~~ 436 (442)
++...++.+.||...+...+ +. .....+|+++. ..++++++..++.|+++.++
T Consensus 365 ~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~ 430 (456)
T d1c7ga_ 365 SLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp HHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhh
Confidence 66677766779975432111 00 11246999986 23899999999999988764
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=8.1e-20 Score=172.09 Aligned_cols=332 Identities=13% Similarity=0.101 Sum_probs=201.6
Q ss_pred ceeeeecccccc-cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEec
Q 046900 49 GVIQMGLAENQV-SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTA 127 (442)
Q Consensus 49 ~~i~l~~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~ 127 (442)
..++|++ +|+. +.+.+.+.+.+... .....|.......++|+.+|++++ .+..+++|+
T Consensus 3 ~~~~f~s-~n~~g~~P~v~~A~~~a~~-----------~~~~~~~~~~~~~~l~~~la~~~g---------~~~~v~f~~ 61 (345)
T d1v72a1 3 PALGFSS-DNIAGASPEVAQALVKHSS-----------GQAGPYGTDELTAQVKRKFCEIFE---------RDVEVFLVP 61 (345)
T ss_dssp CCCBCSC-GGGCCCCHHHHHHHHHTTS-----------SCCCSTTCSHHHHHHHHHHHHHHT---------SCCEEEEES
T ss_pred CCcCcCC-CCCCCCCHHHHHHHHHHhc-----------cCccccCCCHHHHHHHHHHHHHHC---------CCcEEEECC
Confidence 3467875 4444 34556666665431 122346555567889999988875 145799999
Q ss_pred ChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh---HhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCcee-E
Q 046900 128 GATAANELLTFILADPGDALLVPTPYYPGFDRD---LRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVR-G 203 (442)
Q Consensus 128 G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~-~ 203 (442)
|+++++..++..++.+++.+++....+...... .. ..+..+..++.+. ....+++.+++.+.+.......+. .
T Consensus 62 sGt~An~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~ 138 (345)
T d1v72a1 62 TGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEF-FSNGAKLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQPA 138 (345)
T ss_dssp CHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHH-HTTSCEEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEEE
T ss_pred chHHHHHHHHHHHHhcCCccccccccceeeechhhHHH-hcCcccccccccc--cccccHHHhhhhhcccccccccccce
Confidence 999999999999999998888877665443322 22 2566666655433 345789999998865322222233 3
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
++.+++.|++|...+.++++++.++|++||+++++|+++....+.... .++...... ........+.+|..+ .
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~-~ 211 (345)
T d1v72a1 139 CVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLG-CSPAEMTWK-----AGVDALSFGATKNGV-L 211 (345)
T ss_dssp EEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHT-CCTTTTTGG-----GTCCEEEECCGGGTC-S
T ss_pred eeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccc-cCHHHhhcc-----ccccccccCcccccc-c
Confidence 455677899999999999999999999999999999998743322110 011100000 123334445555443 2
Q ss_pred CceeEEEeecCHHHHHHHHHc-cccCCCcH--HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec
Q 046900 284 GFRVGTIYSYNDKVVTTARRM-SSFTLISS--QTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK 359 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~-~~~~~~s~--~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 359 (442)
+.+.+.... ........... ......+. ....+....+.+.. .........++..++.+.+.+. |+.+..
T Consensus 212 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 285 (345)
T d1v72a1 212 AAEAIVLFN-TSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDL-----WLRNARKANAAAQRLAQGLEGLGGVEVLG 285 (345)
T ss_dssp SCEEEEESS-GGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTH-----HHHHHHHHHHHHHHHHHHHTTCTTEEEES
T ss_pred cccccccch-hhhhhhccccccccccccchhhHHhhhhHHHHHHhh-----hhhhccchhhHHHHHHHHHHhcCCcEecc
Confidence 322332222 22222222211 11122222 22222233333322 2334444556666777888776 777777
Q ss_pred CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHH
Q 046900 360 GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNF 433 (442)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~ 433 (442)
|..+++++++++. ++++.|+++ |+.+.++. .+++.+|++++ ..|+|+++++++.|+++
T Consensus 286 p~~~niv~~~~~~-----------~~~~~L~~~-gi~v~~~~----~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 286 GTEANILFCRLDS-----------AMIDALLKA-GFGFYHDR----WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp CCCSSEEEEEECH-----------HHHHHHHHT-TCBCBCSS----SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred CCCccEEEEEcCH-----------HHHHHHHHc-CCCccccC----CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 7667788888753 456677777 99876542 24678999987 33899999999999864
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.84 E-value=1.1e-19 Score=169.70 Aligned_cols=306 Identities=14% Similarity=0.133 Sum_probs=187.3
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh-hcCc
Q 046900 89 ALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW-RTGI 167 (442)
Q Consensus 89 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~-~~G~ 167 (442)
..|++.....++|+.||++++ +++++|++|+|+++++..++..+..+++.+++..+.+..+...... ..+.
T Consensus 29 ~~y~~~~~~~~lr~~ia~~~g--------~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (340)
T d1svva_ 29 AGYGQDSHCAKAARLIGELLE--------RPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGH 100 (340)
T ss_dssp CSTTCSHHHHHHHHHHHHHHT--------CTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHhC--------CCcceEEEcCCHHHHHHHHHHHHhhhccccccccccceeeeecccccccce
Confidence 457666677899999999986 5678999999999999999999999999999998887655432221 1344
Q ss_pred EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCC
Q 046900 168 KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAF 247 (442)
Q Consensus 168 ~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~ 247 (442)
......... ...+.+..................++++.+.|++|.+.+.+++..+...|.+++.++++|++|.....
T Consensus 101 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~ 177 (340)
T d1svva_ 101 KVVTAPCPD---GKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASAL 177 (340)
T ss_dssp CEEEECCTT---SCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHH
T ss_pred eeeeccccc---ccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeeee
Confidence 433433222 12344444444433221222334455555556677788889999999999999999999999874333
Q ss_pred CCC-CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHH---HccccCCCcHHHHHHHHHHhc
Q 046900 248 SSS-EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTAR---RMSSFTLISSQTQYLLASMLS 323 (442)
Q Consensus 248 ~~~-~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~---~~~~~~~~s~~~q~~~~~~l~ 323 (442)
... ...+...... ...+...+.+|..+ +.+.++............. ..............++..++.
T Consensus 178 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~ 248 (340)
T d1svva_ 178 SSPVNDLTLADIAR-------LTDMFYIGATKAGG--MFGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMK 248 (340)
T ss_dssp TSTTCCCCHHHHHH-------HCSEEEEECTTTTC--SSCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTS
T ss_pred cccccccccccccc-------cceeeecCCccccc--cccccccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhh
Confidence 222 2223333322 22344455555543 3344555542222211111 111112223334444555555
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCC
Q 046900 324 NKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSC 403 (442)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f 403 (442)
...+ ....+...++++++.+.|+..|+++..|..++++++.++. +...+|+++..+...+..
T Consensus 249 ~~~~-----~~~~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~v~~~~~~-----------~~~~~l~~~~~~~~~~~~-- 310 (340)
T d1svva_ 249 DNLF-----FELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPILEN-----------TMIAELNNDFDMYTVEPL-- 310 (340)
T ss_dssp TTHH-----HHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEECBEEEH-----------HHHHHHTTTEECEEEEEE--
T ss_pred hhHH-----HHHHHHHHHHHhhhHHHHhcCCCeeecCCCceEEEEeCCH-----------HHHHHHHHhhhhhccccc--
Confidence 5432 3345566777888889999999998766666688877643 334555554222222211
Q ss_pred CCCCCCEEEEEee-cCCHHHHHHHHHHHHHH
Q 046900 404 HCSEPGWFRVCFA-NMSEQTLEVALKRIHNF 433 (442)
Q Consensus 404 ~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~ 433 (442)
..+.+++|+|++ ..+++++++++++|+++
T Consensus 311 -~~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 311 -KDGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp -TTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred -CCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 134678999876 23899999999999863
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=4.4e-18 Score=167.06 Aligned_cols=321 Identities=13% Similarity=0.116 Sum_probs=197.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHH-HHHHHHhh---cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAA-NELLTFIL---ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPI 172 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~a-i~~~~~~l---~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v 172 (442)
...+...+.+++.+.+|.. .....++|+|++++ +.+++.++ ..+++.|+++...|..+..++.. +|++.+.|
T Consensus 92 ~~~le~~~~~~~~~l~g~~---~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~-~g~~~~~v 167 (445)
T d3bc8a1 92 LNKITNSLVLNVIKLAGVH---SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVT-AGFEPVVI 167 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCT---TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHH-TTCEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCC---cccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHH-cCCeeEEE
Confidence 4567778888888877621 12456666766654 44444433 45678999999999999999985 99998888
Q ss_pred ecC-CCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 173 HCD-SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 173 ~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
+.. .++.+.+|+++|++++.+... .++.+|+++.|+|++|.+.+ +++|+++|++||+++++|++|+.....
T Consensus 168 ~~~~~~~~~~id~~~l~~~i~~~~~--~~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~--- 239 (445)
T d3bc8a1 168 ENVLEGDELRTDLKAVEAKIQELGP--EHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSK--- 239 (445)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHCG--GGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH---
T ss_pred EeeccCcccccCHHHHHHHHHhccc--cCeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhh---
Confidence 642 234578999999999987532 25788899999999999987 888899999999999999999853211
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcH--HHHHHHHHHhcCchhHH
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISS--QTQYLLASMLSNKKFTE 329 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~--~~q~~~~~~l~~~~~~~ 329 (442)
........... .+..++..|.+|.++ .+...|+++..+....+.+......+.... ..+.+....+....
T Consensus 240 ~~~~~~~~~~~----~~vd~~~~s~hK~~~-~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--- 311 (445)
T d3bc8a1 240 CMHLIQQGARV----GRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSG--- 311 (445)
T ss_dssp HHHHHHHHHHH----SCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHH---
T ss_pred ccccchhccCc----CCcceEEecCccccc-cCCCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhc---
Confidence 01111112111 122366789999876 334567888877776666554433332222 23333332222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----hCCCeeec-CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe----CC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLR----SAGIECLK-GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS----PG 400 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~----~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~----pg 400 (442)
.....+...++.+++.+.|. ..+..+.. +......++.+....... ..+..++...|.+. ||... ++
T Consensus 312 --~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~~l~~~L~~~-gI~~~~~~~~~ 387 (445)
T d3bc8a1 312 --YRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHH-DKAVTQLGSMLFTR-QVSGARAVPLG 387 (445)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSS-SCHHHHHHHHHHHT-TCCSCEEECSC
T ss_pred --chhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccC-CCCHHHHHHHHHHc-CCCcceeeccc
Confidence 22333333334444444443 34554433 333334444443321111 12355666666555 66311 11
Q ss_pred C-------C---CCC----CCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHHHhhc
Q 046900 401 S-------S---CHC----SEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKRERRR 441 (442)
Q Consensus 401 ~-------~---f~~----~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~~~~~ 441 (442)
. . |+. ....++|++++ ..+++|++.++++|.+++++.++++
T Consensus 388 ~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~~ 443 (445)
T d3bc8a1 388 NVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQ 443 (445)
T ss_dssp CEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 1 0 111 11246898876 3489999999999999999998876
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=7.1e-19 Score=169.61 Aligned_cols=299 Identities=14% Similarity=0.158 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCC-cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHH--hHhhhcCcEEEEEec
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLN-RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDR--DLRWRTGIKIVPIHC 174 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~-~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~--~~~~~~G~~v~~v~~ 174 (442)
.+.|+.++++++ ++.+ .|+++.|+|++++.++..++.+|+.+++....+..... .+. ..+..+..+..
T Consensus 55 ~ea~~~l~~llg--------~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 125 (388)
T d1h0ca_ 55 DEIKEGIQYVFQ--------TRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGE-RIGARVHPMTK 125 (388)
T ss_dssp HHHHHHHHHHHT--------CCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHH-HHC--CBCCBC
T ss_pred HHHHHHHHHHhC--------CCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeeccccc-ccccccccccc
Confidence 444555555543 3333 68899999999999999999999999999887765432 233 35666666655
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s 254 (442)
+. +-.+|.+.+++.+.+. ++++++++..+|.||.+.+ +++|.++|+++|+++++|.+++.... ...
T Consensus 126 ~~--~~~~~~~~~~~~~~~~-----~~~~v~~~~~~n~tG~i~p---i~~i~~~~~~~g~~~~vD~~qs~g~~----~~d 191 (388)
T d1h0ca_ 126 DP--GGHYTLQEVEEGLAQH-----KPVLLFLTHGESSTGVLQP---LDGFGELCHRYKCLLLVDSVASLGGT----PLY 191 (388)
T ss_dssp CT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHTTTCEEEEECTTTTTTS----CCC
T ss_pred CC--ccccchHHHHHHhccC-----CcceEEEeeeeeccccccC---HHHHHHHhhcccccceeccccccccc----ccc
Confidence 44 3357888888877653 7889999999999999998 77888899999999999999884221 222
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc-----------------------cc--CC
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS-----------------------SF--TL 309 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~-----------------------~~--~~ 309 (442)
+... +..+++.|..|.++.|+ .+|+++. .+...+.+.... .. +.
T Consensus 192 ~~~~---------~~D~~~~s~~K~~~gp~-g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 260 (388)
T d1h0ca_ 192 MDRQ---------GIDILYSGSQKALNAPP-GTSLISF-SDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHT 260 (388)
T ss_dssp TTTT---------TCSEEEEESSSTTCCCT-TCEEEEE-CHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSC
T ss_pred cccc---------ccceecccccccccCCC-ceEEEee-cHHHHHhhhhccccccccccccchhhhhhhhcccccccccc
Confidence 2212 33367888999986343 4677777 344333322110 00 11
Q ss_pred CcHHHHHHHHHHhcCchhHHH-HHHHHHHHHHHHHHHHHHHHHhCCCeeecCC----ceEEEEEecCCcccccChhhHHH
Q 046900 310 ISSQTQYLLASMLSNKKFTEN-YIKTNRERLQKRYQMIIEGLRSAGIECLKGN----AGLFCWMNLSPLLEEQTREGELA 384 (442)
Q Consensus 310 ~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~ 384 (442)
.+.....++...+. +..+ -++...++..+..+++.+.+...|+....++ ....+.+.+|+..+ ..+
T Consensus 261 ~~~~~~~~~~~al~---~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~~~------~~~ 331 (388)
T d1h0ca_ 261 IPVISLYSLRESLA---LIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYD------WRD 331 (388)
T ss_dssp CCHHHHHHHHHHHH---HHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCC------HHH
T ss_pred ccHHHHHHHHHHHH---HHHHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCCCCC------HHH
Confidence 22222222223222 2111 2455566667777788888877665543221 22245566765432 678
Q ss_pred HHHHHHHcCcEEEeCCCCCCCCCCCEEEEE-ee-cCCHHHHHHHHHHHHHHHHHHHhhc
Q 046900 385 LWDSMLHEVKLNISPGSSCHCSEPGWFRVC-FA-NMSEQTLEVALKRIHNFMQKRERRR 441 (442)
Q Consensus 385 l~~~l~~~~gi~v~pg~~f~~~~~~~iRls-~~-~~~~e~i~~~l~~l~~~l~~~~~~~ 441 (442)
+...|++++||.+..|... ...+.|||| ++ ..+.++++++++.|++++++++++|
T Consensus 332 ~~~~L~~~~gI~v~~G~~~--~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~~ 388 (388)
T d1h0ca_ 332 IVSYVIDHFDIEIMGGLGP--STGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKKK 388 (388)
T ss_dssp HHHHHHHHHCEECEECCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC-
T ss_pred HHHHHHhcCCEEEeCCchh--hcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 8888888889999988643 235689999 54 3378999999999999999988765
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.80 E-value=1.2e-17 Score=158.19 Aligned_cols=209 Identities=21% Similarity=0.219 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---hcCcEEEEEe
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---RTGIKIVPIH 173 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~~G~~v~~v~ 173 (442)
...|++++|+..+ .+..++++++..|+..++.+++++||+|+++...|.+....+.. ..|+++..++
T Consensus 61 ~~~LE~~la~LEg----------~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d 130 (392)
T d1gc0a_ 61 LNLLEARMASLEG----------GEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVD 130 (392)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEEC
T ss_pred HHHHHHHHHHHhC----------CcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCC
Confidence 4566666666543 56788999999999999999999999999999999886655432 3799988876
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
. -|++.+++++++ ++|+|++.+|+|||..+.+ +++|+++|+++|+++|+|..|+.-.+-
T Consensus 131 ~-------~d~~~~~~ai~~------~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~~----- 189 (392)
T d1gc0a_ 131 M-------ADLQALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQ----- 189 (392)
T ss_dssp T-------TCHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHC-----
T ss_pred c-------cCHHHHHHhCCC------CCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCcccc-----
Confidence 4 368999998875 8999999999999999999 889999999999999999999742221
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHH--HHccc--cCCCcHHHHHHHHHHhcCchhH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTA--RRMSS--FTLISSQTQYLLASMLSNKKFT 328 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~--~~~~~--~~~~s~~~q~~~~~~l~~~~~~ 328 (442)
...++ +--|++.|.+|.++ -...=.|.+++ +....... ...+. -..+++...+.+..-+++..
T Consensus 190 ~Pl~~---------GaDivihS~TKyi~Ghsd~~~G~v~~-~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~TL~-- 257 (392)
T d1gc0a_ 190 RPLEL---------GADLVVHSATKYLSGHGDITAGIVVG-SQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLN-- 257 (392)
T ss_dssp CGGGG---------TCSEEEEETTTTTTCSSSCCCEEEEE-CHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTHH--
T ss_pred ChHHh---------CCCEEEEecceeecCCcccccccccc-hhHHHHHHHHHHHHHccCCcCChhhHHHHHhccccHH--
Confidence 11122 33388999999985 33355677777 44443332 22222 24567777787777777633
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 329 ENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
.+.++..++...+.+.|+++
T Consensus 258 -----lRm~~~~~nA~~lA~~L~~h 277 (392)
T d1gc0a_ 258 -----LRMDRHCANAQVLAEFLARQ 277 (392)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTC
T ss_pred -----HHHHHHHHHHHHHHHHHHhC
Confidence 33455566777888888876
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.80 E-value=5.8e-18 Score=167.15 Aligned_cols=326 Identities=13% Similarity=0.137 Sum_probs=200.9
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCe-------EEEcCCCCcChHHhHh
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDA-------LLVPTPYYPGFDRDLR 162 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~-------Vl~~~p~y~~~~~~~~ 162 (442)
.|+...+..+|+++++++++ .+.+++++++++|+..++++++++|+. ++...+.+..+...+.
T Consensus 70 ~y~~~~~~~~le~~~a~l~g----------~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~ 139 (465)
T d1ax4a_ 70 AYAGSRNYYDLKDKAKELFN----------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE 139 (465)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHC----------CCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHH
Confidence 47777788899999999874 578999999999999999998765543 4455544444444555
Q ss_pred hhcCcEEEEEecC--------CCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC-CcCCCHHHHHHHHHHHHhcC
Q 046900 163 WRTGIKIVPIHCD--------SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPL-GATIQRSVLEELLDFATRKN 233 (442)
Q Consensus 163 ~~~G~~v~~v~~~--------~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPt-G~~~~~~~l~~l~~~~~~~~ 233 (442)
. .|+..+.++.. ....+.+|++.|++++++..+ ..+.++++..++|.. |.+++.+.+++|.++|++||
T Consensus 140 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g 216 (465)
T d1ax4a_ 140 L-NGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGA--DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 216 (465)
T ss_dssp H-TTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred H-cCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhcc--ccccceeeccccccCceecCCHHHHHHHHHHHHHcC
Confidence 3 78888766432 123467899999999987432 245556666666665 46789999999999999999
Q ss_pred cEEEEeccCCcCCC-------CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHH-HHHHHHH--
Q 046900 234 IHLVSDEIYSGSAF-------SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDK-VVTTARR-- 303 (442)
Q Consensus 234 ~~vi~De~y~~~~~-------~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~-~~~~~~~-- 303 (442)
+++++|+++..... .+....+.....++.. .-..++..|.+|.+ .|++.|+++.++.. +......
T Consensus 217 ~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~d~~s~s~~k~~--~~~~~g~l~~~~~~~~~~~~~~~~ 291 (465)
T d1ax4a_ 217 IFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMY---KYADALTMSAKKDP--LLNIGGLVAIRDNEEIFTLARQRC 291 (465)
T ss_dssp CCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHG---GGCSEEEEETTSTT--CCSSCEEEEESSCHHHHHHHHHHH
T ss_pred CEEEEECcchhhhhcccccccccccccchhhhccccc---cccceeEeecccCc--ccccceeEeecchHHHHHhhhccc
Confidence 99999999863111 0111123343333210 01113345666654 56678999885432 2222211
Q ss_pred --c---cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccC
Q 046900 304 --M---SSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQT 378 (442)
Q Consensus 304 --~---~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 378 (442)
. ......+.....++...+.... .....+...++.+++.+.|.+.|+++..+.+++++.++.........
T Consensus 292 ~~~~~~~~~~~~~~~~~~a~~~~~~e~~-----~~~~~~~~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 366 (465)
T d1ax4a_ 292 VPMEGFVTYGGLAGRDMAAMVQGLEEGT-----EEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIP 366 (465)
T ss_dssp HHHTCSTTTTTCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSC
T ss_pred cccccCCCcchhhHHHHHHHhhhhHHhh-----hHHHHHHHHHHHHHHHHHHHhhcCccccCCCcceeeeehhhhcCCCc
Confidence 1 1122233333333333222111 11223334556778899999999998888888787776654322111
Q ss_pred h--hhHHHHHHHHHHcCcEEEeCCCCC--------C---CCCCCEEEEEee--cCCHHHHHHHHHHHHHHHHHHH
Q 046900 379 R--EGELALWDSMLHEVKLNISPGSSC--------H---CSEPGWFRVCFA--NMSEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 379 ~--~~~~~l~~~l~~~~gi~v~pg~~f--------~---~~~~~~iRls~~--~~~~e~i~~~l~~l~~~l~~~~ 438 (442)
. .....+..+++.+.||...+.... + ....+.+|+++. ..|+|+++..++.|.+++++.+
T Consensus 367 ~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~ 441 (465)
T d1ax4a_ 367 GDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 441 (465)
T ss_dssp GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred cccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 123445555666669875432110 0 012357999875 2389999999999999887654
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=6.3e-17 Score=152.82 Aligned_cols=286 Identities=20% Similarity=0.189 Sum_probs=187.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---hcCcEEEEEe
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---RTGIKIVPIH 173 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~~G~~v~~v~ 173 (442)
...|.+.+|+..+ .+..++++++..|+..++.+++++||+|++....|.+....+.. ..|.++..+.
T Consensus 52 ~~~le~~la~LEg----------g~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d 121 (384)
T d1cs1a_ 52 RDVVQRALAELEG----------GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 121 (384)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEEC
T ss_pred HHHHHHHHHHHhC----------CCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhccccccccccc
Confidence 4566666666543 56789999999999999999999999999999999776444322 2677776665
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
. .|.+.+++.+.+ ++++|++.+|+|||..+.+ +++|+++|+++|+++|+|..++...+-
T Consensus 122 ~-------~d~~~~~~~~~~------~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~~----- 180 (384)
T d1cs1a_ 122 Q-------GDEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQ----- 180 (384)
T ss_dssp T-------TCHHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC-----
T ss_pred C-------CCHHHHHhhccc------cccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCcccc-----
Confidence 2 367899988876 8999999999999999999 788888999999999999999743221
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTEN 330 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~ 330 (442)
....+ +--|+++|.+|.++-.| .=.|.+++.++.+.+.+...... ..+++...+.+..-+++..
T Consensus 181 ~Pl~~---------GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~TL~---- 247 (384)
T d1cs1a_ 181 NPLAL---------GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLV---- 247 (384)
T ss_dssp CGGGG---------TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHH----
T ss_pred ccccc---------CCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccchhH----
Confidence 11222 23388999999985233 44577777676665554432222 3467777777777777633
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCe-eecC-----------------CceEEEEEecCCcccccChhhHHHHHHHHHH
Q 046900 331 YIKTNRERLQKRYQMIIEGLRSA-GIE-CLKG-----------------NAGLFCWMNLSPLLEEQTREGELALWDSMLH 391 (442)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~-----------------~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 391 (442)
-+.++..++...+.+.|+++ .++ +.-| .|| .+.+.+... .+....+++.| +
T Consensus 248 ---lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg-~~sf~l~~~-----~~~a~~f~~~L-~ 317 (384)
T d1cs1a_ 248 ---PRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGA-MLSFELDGD-----EQTLRRFLGGL-S 317 (384)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCS-EEEEEESSC-----HHHHHHHHHTC-S
T ss_pred ---HHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcc-eeEEeecch-----HHHHHHHHHhC-C
Confidence 23445566778888889875 222 1111 144 444555432 11233444333 1
Q ss_pred cCcEEEeCCCCCC----------C-----------CCCCEEEEEeecCCHHHHHHHHHHHHHHHHHHHh
Q 046900 392 EVKLNISPGSSCH----------C-----------SEPGWFRVCFANMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 392 ~~gi~v~pg~~f~----------~-----------~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
--.+.+.-|.... . -.++.||||++- |+.+.+++.|.++++...+
T Consensus 318 l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl---Ed~eDLi~Dl~~AL~aa~~ 383 (384)
T d1cs1a_ 318 LFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRAANK 383 (384)
T ss_dssp SSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHHHTC
T ss_pred cceeccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHHHhcC
Confidence 1111111121110 0 134689999996 5577778888888887654
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.78 E-value=9.8e-17 Score=151.80 Aligned_cols=210 Identities=17% Similarity=0.178 Sum_probs=150.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHh---hhcCcEEEEEe
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLR---WRTGIKIVPIH 173 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~---~~~G~~v~~v~ 173 (442)
...|.+.+|...+ .+..++++++..|+..++.+++++||+|+++...|.+....+. .+.|+++..++
T Consensus 65 ~~~LE~~la~LEg----------g~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd 134 (397)
T d1y4ia1 65 TDALEKKLAVLER----------GEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVD 134 (397)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHhC----------CccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccC
Confidence 3455555555543 5668899999999999999999999999999999977655432 14799998886
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
. -|++.+++++++ ++|+|++.+|+||+..+.+ +++|+++|+++|+++|+|..++...+ ..
T Consensus 135 ~-------~d~~~~~~~i~~------~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~~----~~ 194 (397)
T d1y4ia1 135 A-------GKPEEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYC----QQ 194 (397)
T ss_dssp T-------TSHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT----CC
T ss_pred C-------CCHHHHHHhcCC------CCcEEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccCccc----Cc
Confidence 4 367999998865 8999999999999999988 88888999999999999999885332 11
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHH-HHHcccc--CCCcHHHHHHHHHHhcCchhHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTT-ARRMSSF--TLISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~-~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~ 329 (442)
+ ..+ +--|++.|++|.++-.+ .=.|.+++.++.+.+. +...... ..+++...+.+..-|+...
T Consensus 195 P-l~~---------GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~TL~--- 261 (397)
T d1y4ia1 195 P-LQL---------GADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLG--- 261 (397)
T ss_dssp G-GGG---------TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHH---
T ss_pred c-hhc---------CCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCcHH---
Confidence 1 222 23388999999985333 4346666644433332 2222222 3467777777777777633
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
-+.++..++...+.+.|+++
T Consensus 262 ----lRm~~~~~nA~~lA~~L~~h 281 (397)
T d1y4ia1 262 ----IRMERHCENALKIARFLEGH 281 (397)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHHHHHHHHHHhC
Confidence 23344566777888889876
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.78 E-value=4.8e-17 Score=159.02 Aligned_cols=299 Identities=9% Similarity=0.070 Sum_probs=187.1
Q ss_pred HHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC-CCC
Q 046900 102 QAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD-SSN 178 (442)
Q Consensus 102 ~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~-~~~ 178 (442)
..+..++.+..| .+.....+..|+++++.+++.+.. .+++.|+++.-.|+.+..++.. .|++++.++.. .+.
T Consensus 116 ~~~~~~~~~~~g----~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~-~g~~~~~v~~~~~~~ 190 (434)
T d2z67a1 116 NKILESFFKQLG----LNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSF-VGMNMRLVETVLDGD 190 (434)
T ss_dssp HHHHHHHHHHTT----CCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH-TTCEEEEECCEEETT
T ss_pred HHHHHHHHHhcC----CCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHH-hCCcceEEEeecCCC
Confidence 333344444444 334455666677777777766653 2789999999999999888885 89998888642 233
Q ss_pred CCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHH
Q 046900 179 NFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEI 258 (442)
Q Consensus 179 ~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~ 258 (442)
.+.+|+++|++.+.+....+ ++.+|+.++|++++|.+.+ +++|+++|++||+++++|++|+.... ........
T Consensus 191 ~~~~d~~~l~~~i~~~~~~~-~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~---~~~~~~~~ 263 (434)
T d2z67a1 191 RVYVPVEDIENAIKKEIELG-NRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNN---YYLEKLKK 263 (434)
T ss_dssp EEECCHHHHHHHHHHHHHTT-CCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCH---HHHHHHHH
T ss_pred ccCCCHHHHHHHHHhhhhcC-CceEEEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhh---hccccccc
Confidence 46799999999998765433 4567888899999999977 88889999999999999999974220 00011111
Q ss_pred HhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccCCCcHH--HHHHHHHHhcCchhHHHHHHHHH
Q 046900 259 LEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQ--TQYLLASMLSNKKFTENYIKTNR 336 (442)
Q Consensus 259 ~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~s~~--~q~~~~~~l~~~~~~~~~~~~~~ 336 (442)
..+ .+-.+++.|++|.++ .+...|++...++.+.+.+.+.......... ...+....+.. +..+...
T Consensus 264 ~~~-----~~~D~~~~s~hK~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~-----~g~~~~~ 332 (434)
T d2z67a1 264 AFK-----YRVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGS-----KNYLELV 332 (434)
T ss_dssp HHT-----SCCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHH-----HHHHHHH
T ss_pred ccc-----CCcceEEEcCccccc-cCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHH-----hcchhHH
Confidence 111 234467889999886 4445677777777777666654433222222 22333333332 2233444
Q ss_pred HHHHHHHHHHHHHHHh----CCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe----CCCCC-----
Q 046900 337 ERLQKRYQMIIEGLRS----AGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS----PGSSC----- 403 (442)
Q Consensus 337 ~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~----pg~~f----- 403 (442)
++..+..+++.+.|++ .|..+........+.+.+.. +..++...|.+. ||... +...+
T Consensus 333 ~~~~~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~--------~~~~l~~~L~~~-gI~g~~v~~~l~~~g~~~~ 403 (434)
T d2z67a1 333 KNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNS--------DPVEIAAKLYNL-RVTGPRGIKKTDHFGNCYL 403 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECSS--------CHHHHHHHHHHT-TEESCEEECTTCHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHhhhhcCceecCCCCCceeeeecCC--------CHHHHHHHHHHc-CCeeeehhhhccccCeeee
Confidence 4445555555555544 46666544333233333332 256777777666 88532 11111
Q ss_pred CCCCCCEEEEEee-cCCHHHHHHHHHHHHH
Q 046900 404 HCSEPGWFRVCFA-NMSEQTLEVALKRIHN 432 (442)
Q Consensus 404 ~~~~~~~iRls~~-~~~~e~i~~~l~~l~~ 432 (442)
......++|++++ ..++|++++++++|++
T Consensus 404 ~~~~~~~l~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 404 GTYTHDYIVMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp SCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred cccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence 1112467999886 2389999999999986
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.76 E-value=1.3e-16 Score=150.55 Aligned_cols=208 Identities=15% Similarity=0.183 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---hcCcEEEEEec
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---RTGIKIVPIHC 174 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~~G~~v~~v~~ 174 (442)
..|.+.+|...+ .+..++++++..|+..+ ..++++||+|++..+.|......+.. ..|+++..++.
T Consensus 52 ~~le~~la~LE~----------~~~a~~fsSGMaAisal-l~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~ 120 (380)
T d1ibja_ 52 DALESLLAKLDK----------ADRAFCFTSGMAALSAV-THLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT 120 (380)
T ss_dssp HHHHHHHHHHHT----------CSEEEEESSHHHHHHHH-HTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT
T ss_pred HHHHHHHHHHcC----------CceEEehhhHHHHHHHH-HHhhCCCCEEEEEecccccccchhhhhhccccccccccCc
Confidence 455566666543 56788888889999754 57889999999999999886655432 37888877753
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s 254 (442)
.|.+.+++++++ ++|+|++..|+||+..+.+ +++|+++|+++|+++|+|..++.... ..+
T Consensus 121 -------~~~~~~~~ai~~------~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~----~~P 180 (380)
T d1ibja_ 121 -------TKLDEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVL----SRP 180 (380)
T ss_dssp -------TSHHHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTT----CCG
T ss_pred -------chHHHHHHHhcc------CccEEEecccccccccccc---HHHHHHHHHHcCCeEEeecccccccc----ccc
Confidence 367888888754 8999999999999999999 78888889999999999999975332 111
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHHH
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTENY 331 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~ 331 (442)
+ .+ +-.+++.|++|.++-.| .=.|.++..++.+.+.++..... ..+++...+.+..-+++..
T Consensus 181 l-~~---------GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~----- 245 (380)
T d1ibja_ 181 L-EL---------GADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA----- 245 (380)
T ss_dssp G-GT---------TCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHH-----
T ss_pred c-cc---------CCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchhhh-----
Confidence 1 22 33488999999985333 34577777666666555443332 3467777777777777633
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC
Q 046900 332 IKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 332 ~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
.+.++..++...+.+.|+++
T Consensus 246 --lRm~~~~~nA~~lA~~L~~h 265 (380)
T d1ibja_ 246 --LRIEKQQENARKIAMYLSSH 265 (380)
T ss_dssp --HHHHHHHHHHHHHHHHHHTC
T ss_pred --hhHHHHHHHHHHHHHHHHhC
Confidence 34455566777888888875
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.75 E-value=5e-16 Score=147.13 Aligned_cols=210 Identities=16% Similarity=0.201 Sum_probs=148.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---hcCcEEEEEe
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---RTGIKIVPIH 173 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~~G~~v~~v~ 173 (442)
...|.+.+|+..+ .+..++++++..|+..++.+++++||+|++....|.+....+.. ..|.++..++
T Consensus 69 ~~~LE~~la~LEg----------g~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~ 138 (398)
T d1qgna_ 69 TVVLEEKISALEG----------AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVID 138 (398)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred HHHHHHHHHHHhC----------CceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhccccccccccccccc
Confidence 3566666666543 56789999999999999999999999999999999876544321 3788887775
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
.. +.+..++.+.. .++++|++.+|+|||..+.+ +++|+++|+++|+++|+|..++...+-.
T Consensus 139 ~~-------~~~~~~~~~~~-----~~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~~~---- 199 (398)
T d1qgna_ 139 PA-------DVGALELALNQ-----KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK---- 199 (398)
T ss_dssp SS-------CHHHHHHHHHH-----SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC----
T ss_pred cc-------chhhhhhhhcc-----ccceEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeeccccCC----
Confidence 32 34444444332 38999999999999999988 8888999999999999999997533211
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHHHHhcCchhHHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLASMLSNKKFTEN 330 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~ 330 (442)
+ .++ +--|++.|++|.++-.| +=.|.++. ++.+...++..... ..+++...+.+..-+++.
T Consensus 200 P-l~~---------GaDiVihS~TKy~~Ghsdv~~G~v~~-~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~TL----- 263 (398)
T d1qgna_ 200 A-LAL---------GADLVLHSATKFLGGHNDVLAGCISG-PLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTL----- 263 (398)
T ss_dssp T-TTT---------TCSEEEECTTTTTTCSSSCCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGH-----
T ss_pred c-hhh---------CCCEEEEechhhcCcccceeehhhcc-hhhhhhhhhhhcccCCCcCCHHHHHHHHhcchHH-----
Confidence 1 122 33388999999986344 33455555 66665555543332 346777777777777653
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 046900 331 YIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
..+.++..++...+.+.|+++
T Consensus 264 --~lRm~~~~~nA~~lA~~L~~h 284 (398)
T d1qgna_ 264 --HLRVQQQNSTALRMAEILEAH 284 (398)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHHHHHHHhC
Confidence 233455566777888888875
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.75 E-value=1.9e-16 Score=147.88 Aligned_cols=346 Identities=14% Similarity=0.130 Sum_probs=214.4
Q ss_pred ceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecC
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAG 128 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G 128 (442)
.-|+|-..||..++ .+.+++...... ++. +.+.....|+...-..++.+...+...+.++ +..-+|-..+|
T Consensus 24 ~~l~LiaSEN~~S~-~v~~a~~S~l~n---kya-eG~pg~ryy~G~~~id~iE~la~~ra~~lF~----a~~anVqp~SG 94 (405)
T d1kl1a_ 24 AKIELIASENFVSR-AVMEAQGSVLTN---KYA-EGYPGRRYYGGCEYVDIVEELARERAKQLFG----AEHANVQPHSG 94 (405)
T ss_dssp HSEECCTTCCCCCH-HHHHHHTSGGGG---CCC-CEETTEESSSCCHHHHHHHHHHHHHHHHHHC----CSEEECCCSSH
T ss_pred cCceEeccCCcCCH-HHHHHhcCcccC---cCc-CCCCCccccCCchhHHHHHHHHHHHHHHHhC----CCcceeeccCc
Confidence 44788888887764 333333322110 000 0011112233333344555545566666665 34445655555
Q ss_pred hHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh-----HhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeE
Q 046900 129 ATAANELLTFILADPGDALLVPTPYYPGFDRD-----LRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRG 203 (442)
Q Consensus 129 ~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~-----~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 203 (442)
+.|+..++.+|++|||+|+..++...++... .. ....+++.++++.+ ++.+|.|++++.+++. ++|+
T Consensus 95 -s~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~-g~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~-----kPkl 166 (405)
T d1kl1a_ 95 -AQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFS-GVQYNFVAYGVDPE-THVIDYDDVREKARLH-----RPKL 166 (405)
T ss_dssp -HHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHH-HHHSEEEEECBCTT-TCSBCHHHHHHHHHHH-----CCSE
T ss_pred -hHHHHHHHHHhcCCCCEEEEeecccccccccCcccccc-ceEEEEEEeccchh-cccccHHHHHHHHHhh-----Ccce
Confidence 5677888899999999999988877664432 12 14568888888864 5689999999999885 8888
Q ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCC
Q 046900 204 VLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLP 283 (442)
Q Consensus 204 v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (442)
|++..-.+|- .++ .+++.++|.+.|.+++.|-+|......+..+++.... - -++..|.+|+| +
T Consensus 167 Ii~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~---------a-Dvvt~tThKtl--r 229 (405)
T d1kl1a_ 167 IVAAASAYPR--IID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY---------A-HFVTTTTHKTL--R 229 (405)
T ss_dssp EEECCSSCCS--CCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT---------C-SEEEEESSSTT--C
T ss_pred EEeccccccc--ccC---hHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhh---------h-hheeccccccc--c
Confidence 7775444443 233 7788888889999999999986422223333333222 1 25678999998 7
Q ss_pred CceeEEEeecCHHHHHHHHHccccCC-CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC-C
Q 046900 284 GFRVGTIYSYNDKVVTTARRMSSFTL-ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKG-N 361 (442)
Q Consensus 284 G~RiG~i~~~~~~~~~~~~~~~~~~~-~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~ 361 (442)
|-|.|.|++ ++.+.+.+.+...++. .++....+++.+..-.+......+...++..++.+.|.+.|.+.|+++... .
T Consensus 230 GPrgg~I~~-~~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~ggT 308 (405)
T d1kl1a_ 230 GPRGGMILC-QEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGT 308 (405)
T ss_dssp CCSCEEEEE-CHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC
T ss_pred CCCCceEEe-cchhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCceeecCCC
Confidence 889999998 5677777665444422 222211211111111111122345667788889999999999999998752 3
Q ss_pred ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe----CCCCCCCCCCCEEEEEee-----cCCHHHHHHHHHHHHH
Q 046900 362 AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS----PGSSCHCSEPGWFRVCFA-----NMSEQTLEVALKRIHN 432 (442)
Q Consensus 362 ~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~----pg~~f~~~~~~~iRls~~-----~~~~e~i~~~l~~l~~ 432 (442)
.+..+|+++..... ....++++|++.||.+. |+..=.+..+..|||+.. .+.++++++..+.|.+
T Consensus 309 d~H~vlvdl~~~~~------~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~ 382 (405)
T d1kl1a_ 309 DNHLLLVDLRPQQL------TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGL 382 (405)
T ss_dssp SSSEEEEECGGGTC------CHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccceeeccccccCC------cHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHH
Confidence 34477888754211 22445566677799887 432111112356999975 3478999999998888
Q ss_pred HHH
Q 046900 433 FMQ 435 (442)
Q Consensus 433 ~l~ 435 (442)
+++
T Consensus 383 ~l~ 385 (405)
T d1kl1a_ 383 VLK 385 (405)
T ss_dssp HHT
T ss_pred HHh
Confidence 874
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.75 E-value=2.1e-16 Score=150.49 Aligned_cols=296 Identities=15% Similarity=0.185 Sum_probs=184.8
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCc--EEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcCh--HHhHhhhcCcEEEE
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNR--IVVTAGATAANELLTFILADPGDALLVPTPYYPGF--DRDLRWRTGIKIVP 171 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~--i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~--~~~~~~~~G~~v~~ 171 (442)
-..+.|+.++++++ ++++. +++|+|+|+++..++..+..+++.+++....+... ..... ..+.....
T Consensus 34 ~~~~~r~~l~~l~~--------~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 104 (361)
T d1m32a_ 34 VVEQIRQQLTALAT--------ASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAG-LMGIAHHA 104 (361)
T ss_dssp THHHHHHHHHHHHC--------SSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHH-HHTCCEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhh-hhhccccc
Confidence 45788888888876 55554 77888899999999999988888887776654332 22223 35555555
Q ss_pred EecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCC
Q 046900 172 IHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 172 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~ 251 (442)
+....... .+.+..+.... ...+++++.++.-+|-||...+ +++|.++|+++|+++++|.+++... .
T Consensus 105 ~~~~~~~~--~~~~~~~~~~~----~~~~~~~v~~~~~~~~tG~~~~---i~~i~~~~~~~g~~~~vDa~qs~G~----~ 171 (361)
T d1m32a_ 105 YDCGEVAR--PDVQAIDAILN----ADPTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGG----I 171 (361)
T ss_dssp EECCTTSC--CCHHHHHHHHH----HCTTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTT----S
T ss_pred ccccccCC--ccchhhHHHHH----hccCccceEEEeeecccccchh---hhhhhhhhcccceeeEeecccccCc----c
Confidence 55443322 22222222211 1348889999999999999999 7788889999999999999998422 2
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHHH--------------------ccccCCC
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARR--------------------MSSFTLI 310 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~--------------------~~~~~~~ 310 (442)
...+..+ +..+++.|..|.++ .+| +|+++.. +......+. .....+.
T Consensus 172 ~~d~~~~---------~~D~~~~s~~K~l~gp~G--~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 239 (361)
T d1m32a_ 172 PMDIAAL---------HIDYLISSANKCIQGVPG--FAFVIAR-EQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTS 239 (361)
T ss_dssp CCCTTTT---------TCSEEEEESSSTTCCCSS--EEEEEEE-HHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCC
T ss_pred ccccccc---------ccceEEeeecccccCCCC--ceEEEec-hhhhhhhccccccccccchhhhccccccccccCCCC
Confidence 2222222 44578889999884 346 6888774 322211110 1111223
Q ss_pred cHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC---ceEEEEEecCCcccccChhhHHHHHH
Q 046900 311 SSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN---AGLFCWMNLSPLLEEQTREGELALWD 387 (442)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~l~~ 387 (442)
+.....++...+.... .+.......++.++..+.+.+.++..|+....++ +...+.+.+|+.... +..++..
T Consensus 240 ~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~----~~~~~~~ 314 (361)
T d1m32a_ 240 PTHTVLAFAQALKELA-KEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQY----RFSEFYR 314 (361)
T ss_dssp CHHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTC----CHHHHHH
T ss_pred CchhhhHHHHHHHHHH-HhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcEEEEECCCCCCC----CHHHHHH
Confidence 3344444443333111 0112334445566666777788877776554322 233445566653221 2567788
Q ss_pred HHHHcCcEEEeCCCCCCCCCCCEEEEEe-ecCCHHHHHHHHHHHHHHH
Q 046900 388 SMLHEVKLNISPGSSCHCSEPGWFRVCF-ANMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 388 ~l~~~~gi~v~pg~~f~~~~~~~iRls~-~~~~~e~i~~~l~~l~~~l 434 (442)
.|.++ ||.+.+|... .++.+|||. +..++++++++++.|+++|
T Consensus 315 ~l~~~-gi~i~~G~~~---~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 315 RLKEQ-GFVIYPGKVS---QSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp HHHHT-TEECEECCCS---SSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHHC-CcEEECCCcC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 87666 9999988653 457899995 3348999999999999876
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=5.2e-16 Score=145.65 Aligned_cols=346 Identities=15% Similarity=0.112 Sum_probs=212.5
Q ss_pred ceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecC
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAG 128 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G 128 (442)
.-|+|-..||..++. +.+++....... +.+| +.....|+...-..++.+-..+...+.++ +...+|-.. +
T Consensus 27 ~~i~LiaSEN~~S~~-v~~a~~S~l~nk-YaeG---~pg~Ryy~G~~~iD~iE~la~~ra~~lF~----a~~anVqp~-S 96 (416)
T d1dfoa_ 27 EHIELIASENYTSPR-VMQAQGSQLTNK-YAEG---YPGKRYYGGCEYVDIVEQLAIDRAKELFG----ADYANVQPH-S 96 (416)
T ss_dssp HSEECCTTCCCCCHH-HHHHHTSGGGGC-CCCE---ETTEESSSCCHHHHHHHHHHHHHHHHHHT----CSEEECCCS-S
T ss_pred cCceEecCcccCCHH-HHHHhcCcccCc-ccCC---CCCCcccCCChhHHHHHHHHHHHHHHHhC----CCcceeecc-c
Confidence 447888888877643 333333221100 0001 11111233332234444444566666665 334455554 4
Q ss_pred hHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh----hcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEE
Q 046900 129 ATAANELLTFILADPGDALLVPTPYYPGFDRDLRW----RTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGV 204 (442)
Q Consensus 129 ~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~----~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 204 (442)
++.|+..++.+|++|||+|+..++.+.++...-.. ....+.++++++.+ ..+|.|++++..++. ++|+|
T Consensus 97 Gs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~--~~IDyd~l~~~a~~~-----kPklI 169 (416)
T d1dfoa_ 97 GSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDAT--GHIDYADLEKQAKEH-----KPKMI 169 (416)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSS--SSBCHHHHHHHHHHH-----CCSEE
T ss_pred CccHHHHHHHHhcCCCCeeeeccccccccccccccccccCceEEEEecccCCc--cCccHHHHHHHHHHh-----ccceE
Confidence 56788888999999999999999988776442110 13457888888753 349999999999875 88888
Q ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCC
Q 046900 205 LITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPG 284 (442)
Q Consensus 205 ~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (442)
+...-.+| ..++ .+++.++|.+.|.+++.|.+|......+..+.+.... . -++.+|++|+| +|
T Consensus 170 i~G~S~y~--r~~d---~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~---------a-Dvvt~tThKtl--rG 232 (416)
T d1dfoa_ 170 IGGFSAYS--GVVD---WAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH---------A-HVVTTTTHKTL--AG 232 (416)
T ss_dssp EEECSSCC--SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT---------S-SEEEEESSSTT--CC
T ss_pred Eecccccc--cccC---HHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc---------c-ceeeeehhhcc--cC
Confidence 87644443 3344 7778888889999999999987432223333332222 1 26789999998 78
Q ss_pred ceeEEEeec--CHHHHHHHHHccccCC-CcHHHHHHH--HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 046900 285 FRVGTIYSY--NDKVVTTARRMSSFTL-ISSQTQYLL--ASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK 359 (442)
Q Consensus 285 ~RiG~i~~~--~~~~~~~~~~~~~~~~-~s~~~q~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 359 (442)
-|.|.|++. .+.+.+.+.+...++. .++....++ +..+. +......+...+++.++.+.|.+.|.+.|+++..
T Consensus 233 PrggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~--Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ 310 (416)
T d1dfoa_ 233 PRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALK--EAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVS 310 (416)
T ss_dssp CSCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHH--HTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGG
T ss_pred CCceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHH--HHcCHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Confidence 899999984 3566666655443322 222111111 22222 1111223566778888999999999999999874
Q ss_pred C-CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe----CCCCCCCCCCCEEEEEee-----cCCHHHHHHHHHH
Q 046900 360 G-NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS----PGSSCHCSEPGWFRVCFA-----NMSEQTLEVALKR 429 (442)
Q Consensus 360 ~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~----pg~~f~~~~~~~iRls~~-----~~~~e~i~~~l~~ 429 (442)
. ..+..+++++..... ....++.++++.||.+. |+..=.+..+..|||+.. .+.++++++..+.
T Consensus 311 ggTdnHlvlvdl~~~~~------~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~ 384 (416)
T d1dfoa_ 311 GGTDNHLFLVDLVDKNL------TGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGW 384 (416)
T ss_dssp GSCSSSEEEEECGGGTC------CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCceeEEEecccCC------CHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHH
Confidence 2 333467788754211 22445666788899876 332111112456999975 3478999999888
Q ss_pred HHHHHHH
Q 046900 430 IHNFMQK 436 (442)
Q Consensus 430 l~~~l~~ 436 (442)
|.++++.
T Consensus 385 I~~~l~~ 391 (416)
T d1dfoa_ 385 MCDVLDS 391 (416)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 8888764
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.74 E-value=3.2e-17 Score=158.73 Aligned_cols=287 Identities=9% Similarity=0.018 Sum_probs=176.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh------cCCCCeEEEcCCCCcChHHhHhhhcCcEEE
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL------ADPGDALLVPTPYYPGFDRDLRWRTGIKIV 170 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l------~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~ 170 (442)
....|+.+|++++ +++++|++|+++|+++..++... ..+++.|++.+-.++........ .+.++.
T Consensus 72 ~e~~R~~iA~llg--------a~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~ 142 (404)
T d1qz9a_ 72 SERLGNRLATLIG--------ARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAE-GLADML 142 (404)
T ss_dssp HHHHHHHHHTTTT--------CCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHh-hhheee
Confidence 3567888888765 78999999999999998776432 35788888887776654333321 222222
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
.++.+..+ ..+++.+++++.+ ++++|+++..+|.||.+++ +++|+++|+++++++++|.+++. +.
T Consensus 143 ~~~~~~~~--~~~~~~~~~~i~~------~T~lV~i~~v~~~tG~~~p---v~~i~~~~~~~~~~~~vD~~q~~----g~ 207 (404)
T d1qz9a_ 143 QQGYTLRL--VDSPEELPQAIDQ------DTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSA----GA 207 (404)
T ss_dssp CSSCEEEE--ESSGGGHHHHCST------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT----TT
T ss_pred eeceeccc--cccchhHHHhcCC------CceEEEEecccccccceec---HHHHhccccccccceeEEeeccc----cc
Confidence 22222111 2467788887764 8999999999999999999 78888999999999999999984 22
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc-------------------------
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS------------------------- 305 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~------------------------- 305 (442)
....+.... ..+++.|.+|.++.+..-+|+++.++ ...+.+....
T Consensus 208 ~~~~~~~~~---------~d~~~~s~~K~~~~~~g~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (404)
T d1qz9a_ 208 VPVDLHQAG---------ADYAIGCTYKYLNGGPGSQAFVWVSP-QLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARY 277 (404)
T ss_dssp SCCCHHHHT---------CSEEEECSSSTTCCCTTCCCEEEECT-TTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGG
T ss_pred ccccccccc---------ceEEEEechhhcccCCceEEEEEech-hhhhhCCccccccCCccccccccccccccccchhh
Confidence 334454443 23677888998753433457777643 2222111000
Q ss_pred ccCCCcHHH---HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh-CCCeeecCC-----ceEEEEEecCCcccc
Q 046900 306 SFTLISSQT---QYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRS-AGIECLKGN-----AGLFCWMNLSPLLEE 376 (442)
Q Consensus 306 ~~~~~s~~~---q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~-----~g~~~~~~~~~~~~~ 376 (442)
..+..+... .......+.... ...+.+....+......+.+.+.. .|+++..|. ++ .+.+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~-~vsf~~~~---- 350 (404)
T d1qz9a_ 278 LCGTQPITSLAMVECGLDVFAQTD--MASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGS-HVSFEHPE---- 350 (404)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCS-EEEEECTT----
T ss_pred hhhhccchhHHHHHHHHHHHHHhh--HHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceee-EEEEecCC----
Confidence 001112222 222233333322 122333333333333334444433 477776532 44 45555554
Q ss_pred cChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeec--CCHHHHHHHHHHHHHHHHH
Q 046900 377 QTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFAN--MSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 377 ~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~e~i~~~l~~l~~~l~~ 436 (442)
..++.+.|.++ ||.+.. ..++.||||++. -+++|++++++.|++++++
T Consensus 351 -----~~~v~~~L~~~-gi~~~~------r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 351 -----GYAVIQALIDR-GVIGDY------REPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp -----HHHHHHHHHTT-TEECEE------ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHC-CCEEee------cCCCeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 56777777554 996532 124789999862 2899999999999999876
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.73 E-value=3.3e-16 Score=149.94 Aligned_cols=290 Identities=12% Similarity=0.141 Sum_probs=186.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEec
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHC 174 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~ 174 (442)
...++++.+|+|++ .+.++.++++|.|+.+++.++ +++||.|+++..+|.....++.. .|++++.+++
T Consensus 32 ~v~~~E~~la~~~g----------~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~~-~g~~pv~~d~ 100 (376)
T d1mdoa_ 32 KNQELEAAFCRLTG----------NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVL-LGANPVMVDV 100 (376)
T ss_dssp HHHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHH-TTCEEEEECB
T ss_pred HHHHHHHHHHHHHC----------cCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccchhc-cccceeeecc
Confidence 46788888888876 456788888899999999998 89999999999999999999985 9999999999
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s 254 (442)
+.+ .+.+|++.|++++++ ++++|+++ +..|...+ +.+|.++|+++|++||+|.+++....-... .
T Consensus 101 ~~~-~~~~d~~~l~~~i~~------~tkaIi~~---h~~G~~~~---~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~--~ 165 (376)
T d1mdoa_ 101 DRD-TLMVTPEHIEAAITP------QTKAIIPV---HYAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYKGR--H 165 (376)
T ss_dssp CTT-TCCBCHHHHHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTE--E
T ss_pred ccc-ccCCCHHHHHHhcCC------CCeEEEEe---CCCCCccc---hhHHHHHHHhcCceEEeccchhccCeeCCe--e
Confidence 864 578999999999875 88988876 46787776 677888888999999999999842210100 0
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccccC--------------------------
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT-------------------------- 308 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~-------------------------- 308 (442)
. ...+..++-...+|.++ +| ..|.+++.++.+.+.++.....+
T Consensus 166 ~---------g~~g~~~~Sf~~~K~l~-~g-~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~ 234 (376)
T d1mdoa_ 166 I---------GARGTAIFSFHAIKNIT-CA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKY 234 (376)
T ss_dssp T---------TSSSEEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBC
T ss_pred c---------ccccCccccCCCcCCCC-CC-CCCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhccccc
Confidence 0 01232222223468885 33 46889988888877765543221
Q ss_pred CCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCe-eecCC----ceEEEEEecCCcccccChhhHH
Q 046900 309 LISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIE-CLKGN----AGLFCWMNLSPLLEEQTREGEL 383 (442)
Q Consensus 309 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~----~g~~~~~~~~~~~~~~~~~~~~ 383 (442)
.++....+....-|. .+.+..++.++..+.+.+.|.+.... ..... ..++.++......... ....
T Consensus 235 ~~~~~~Aai~~~qL~-------~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Rd 305 (376)
T d1mdoa_ 235 NLPDLNAAIALAQLQ-------KLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCG--ITRD 305 (376)
T ss_dssp CCCHHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHS--SCHH
T ss_pred ccchhhhhhhhhhhh-------hhhHHHHHHhhhhhhhhhhcccccccccccccccccccccccccccccccch--hhHH
Confidence 122222222222222 12334445556667777888765322 22111 1111222211110000 0134
Q ss_pred HHHHHHHHcCcEEEeCCCCCCC------------CC---------CCEEEEEee-cCCHHHHHHHHHHHHHHH
Q 046900 384 ALWDSMLHEVKLNISPGSSCHC------------SE---------PGWFRVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 384 ~l~~~l~~~~gi~v~pg~~f~~------------~~---------~~~iRls~~-~~~~e~i~~~l~~l~~~l 434 (442)
++.+.|.++ ||.+++. |.+ .. ...+.|-+. .++++++++.++.|++++
T Consensus 306 ~l~~~L~~~-gI~~~~~--y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 306 ALMASLKTK-GIGTGLH--FRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp HHHHHHHHT-TBCCBCC--CCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCeeeE--CcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 678888665 9988643 211 00 133666443 558899999999999875
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=4.2e-16 Score=151.39 Aligned_cols=366 Identities=11% Similarity=0.031 Sum_probs=204.1
Q ss_pred CCCCCCCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCC
Q 046900 39 NPYEESTNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGG 114 (442)
Q Consensus 39 ~~~~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~ 114 (442)
..|..+.....+||+..+ .+.++ ++.+.+.+.++.... ..........+....+|+.+.+....
T Consensus 31 G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~------------~~~~~~~~~~~~~~~la~~l~~~~p~ 98 (425)
T d1sffa_ 31 NCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL------------SHTCFQVLAYEPYLELCEIMNQKVPG 98 (425)
T ss_dssp BTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC------------SCCCTTTEECHHHHHHHHHHHHHSSC
T ss_pred cCEEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhc------------CCcccccccCcHHHHHHHHHHhhhhh
Confidence 345555667788998865 34443 455666665543221 00011112234556677777765320
Q ss_pred CCccCCCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcCc-------------EEEEEec--CCC
Q 046900 115 RAKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGI-------------KIVPIHC--DSS 177 (442)
Q Consensus 115 ~~~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G~-------------~v~~v~~--~~~ 177 (442)
-..+.+++++++++++..+++... .....|+...-+|.+....+....|. .....+. ...
T Consensus 99 ---~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (425)
T d1sffa_ 99 ---DFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLH 175 (425)
T ss_dssp ---SSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGG
T ss_pred ---cccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccc
Confidence 113579999999999999876642 23467888888887754433211221 1111111 111
Q ss_pred CCCcCCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc-
Q 046900 178 NNFQITPQALEAAYKEAESKDMRVRGVLITNP-SNPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS- 254 (442)
Q Consensus 178 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s- 254 (442)
+.+..........+........++.+++ .-| ....|. ..+.+-++.|.++|++||+++|.||++..+...+..+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~vaavi-~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~ 254 (425)
T d1sffa_ 176 GISEDDAIASIHRIFKNDAAPEDIAAIV-IEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAME 254 (425)
T ss_dssp TBCHHHHHHHHHHHHHHTCCGGGEEEEE-ECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGG
T ss_pred cccchhhHHHHHHHHHhcccccceEEEE-ecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHH
Confidence 1111111111111111112223454444 445 444565 456777999999999999999999999975444433211
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhcCchhHHHHH
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLSNKKFTENYI 332 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~ 332 (442)
...+. +| +.+++|++| .|+.+|.+++ ++.+.+.+.. ....+..++++.+++.+.|+-.+- .+..
T Consensus 255 ~~gv~-------PD----i~~~gK~l~-gG~P~~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~-~~~~ 320 (425)
T d1sffa_ 255 QMGVA-------PD----LTTFAKSIA-GGFPLAGVTG-RAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ-ENLL 320 (425)
T ss_dssp GTTSC-------CS----EEEECGGGG-TSSCCEEEEE-EHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-TTHH
T ss_pred hcCCC-------cc----ceecccccC-CCcceEEEEE-cHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHH-hhhh
Confidence 11111 22 346899998 7999999998 5666555432 222355677777777777663210 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcc--cccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCE
Q 046900 333 KTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLL--EEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGW 410 (442)
Q Consensus 333 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~ 410 (442)
++..+.-...++.+.+.+++.++......-|+++.+.+.... ..........+..+++++ ||++.++.. ....
T Consensus 321 ~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~-Gvl~~~~g~----~~n~ 395 (425)
T d1sffa_ 321 QKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCGP----YYNV 395 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHT-TEECEEEST----TSCE
T ss_pred hhhhhhhhhhhhhhhhhHhhCCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHHC-CCEEeccCC----CCCE
Confidence 222222222333444444545543332333445555553211 111222356788888887 999987543 2357
Q ss_pred EEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 411 FRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 411 iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
+|++.+ .+++++++++++++.+++++.++
T Consensus 396 i~~~PpL~it~~eid~~l~~l~~al~eikk 425 (425)
T d1sffa_ 396 LRILVPLTIEDAQIRQGLEIISQCFDEAKQ 425 (425)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999876 45999999999999999998764
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=2.1e-15 Score=142.90 Aligned_cols=209 Identities=11% Similarity=0.067 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---hcCcEEEEEec
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---RTGIKIVPIHC 174 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~~G~~v~~v~~ 174 (442)
..|.+.+|+..+ .+..++++++..|+..++.+++++||+|++....|.+....+.. ..|+++..++.
T Consensus 61 ~~le~~la~LEg----------~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~ 130 (391)
T d1cl1a_ 61 FSLQQAMCELEG----------GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDP 130 (391)
T ss_dssp HHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred HHHHHHHHHHhC----------CccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccC
Confidence 455555555432 57799999999999999999999999999999999876554432 37888888763
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHh--cCcEEEEeccCCcCCCCCCCc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATR--KNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~--~~~~vi~De~y~~~~~~~~~~ 252 (442)
. |.+.+++++++ ++++|++.+|+||+..+.+ +++++++|++ +|+++|+|..++...+-
T Consensus 131 ~-------d~~~~~~~i~~------~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~atP~~~---- 190 (391)
T d1cl1a_ 131 L-------IGADIVKHLQP------NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF---- 190 (391)
T ss_dssp T-------CGGGGGGTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS----
T ss_pred c-------ccccccccccc------ccceeeecccCcccccccc---cHHHHHHHHhccCCcEEEEeccccchhhh----
Confidence 2 56777777654 8999999999999999998 6666777755 59999999999853321
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHcccc-CCCcHHHHHHHHHHhcCchhHHH
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSSF-TLISSQTQYLLASMLSNKKFTEN 330 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~ 330 (442)
...++ +-.|++.|.+|.++-.| .=.|.++.+++............ ..+++...+.+..-+++.
T Consensus 191 -~Pl~~---------GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~TL----- 255 (391)
T d1cl1a_ 191 -KALDF---------GIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTL----- 255 (391)
T ss_dssp -CGGGG---------TCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTTH-----
T ss_pred -ccccc---------ccceEEeecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhccchhH-----
Confidence 11222 23388999999985333 34566776444333332222222 456777777777666653
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 046900 331 YIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
..+.++..++...+.+.|+++
T Consensus 256 --~lR~~~~~~nA~~vA~~L~~h 276 (391)
T d1cl1a_ 256 --GVRLRQHHESSLKVAEWLAEH 276 (391)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHHHHHHHhc
Confidence 233445566777888888876
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2.4e-15 Score=146.59 Aligned_cols=352 Identities=12% Similarity=0.025 Sum_probs=224.0
Q ss_pred eeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccC-CCcEEEecCh
Q 046900 51 IQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFD-LNRIVVTAGA 129 (442)
Q Consensus 51 i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~~~i~~t~G~ 129 (442)
+||.+..+....+...+++...... ....+..+....++.+.+.+++.+.++.+-... ...-.+|+|+
T Consensus 56 ~n~asf~~t~~~~~~~~l~~~~~~~-----------N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~Gg 124 (450)
T d1pmma_ 56 QNLATFCQTWDDENVHKLMDLSINK-----------NWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 124 (450)
T ss_dssp GBCSCCSCCCCCHHHHHHHHHTTTC-----------BTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSH
T ss_pred ccccccccCCCCHHHHHHHHHHHhc-----------CCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCch
Confidence 4666555555556666666665432 112233344568999999999999887422111 1236899999
Q ss_pred HHHHHHHHHhhcC------------CCCeEEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhc
Q 046900 130 TAANELLTFILAD------------PGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESK 197 (442)
Q Consensus 130 ~~ai~~~~~~l~~------------~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 197 (442)
|+++.+.+.+... ....+++....|..+..+++. .|+++..+|.+++ ++.+|++.|++.+.+
T Consensus 125 SeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~-~gi~~~~v~~~~~-~~~~d~~~L~~~i~~---- 198 (450)
T d1pmma_ 125 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARY-WDVELREIPMRPG-QLFMDPKRMIEACDE---- 198 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHH-TTCEEEECCCBTT-BCSCCHHHHHHHCCT----
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHH-cCCCceEeeecCC-CCcCcHHHHHHHhhh----
Confidence 9999987765421 123577788889999999995 9999999998863 588999999999875
Q ss_pred CCceeEEEEeCCCCCCCcCCCHHHHHHHHH---HHHhcCcEEEEeccCCcCCC--CCCCcccHHHHHhhhcCCCCCcEEE
Q 046900 198 DMRVRGVLITNPSNPLGATIQRSVLEELLD---FATRKNIHLVSDEIYSGSAF--SSSEFVSIAEILEARQYKDSERVHI 272 (442)
Q Consensus 198 ~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~---~~~~~~~~vi~De~y~~~~~--~~~~~~s~~~~~~~~~~~~~~~vi~ 272 (442)
++.+|+.+.++|.||.+-+.+++.++++ .|+++++++.+|.+|+.+.. ..+...-.. ....-.-+
T Consensus 199 --~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~--------~~~~aDSi 268 (450)
T d1pmma_ 199 --NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF--------RLPRVKSI 268 (450)
T ss_dssp --TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST--------TSTTEEEE
T ss_pred --CceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhh--------cccceeEe
Confidence 7888888899999999999887666654 46788999999999986431 111000000 01133345
Q ss_pred EecCcccCCCCCceeEEEeecCHHHHHHHHH---------cccc-CCCc-----HHHHHHHHHHhcCchhHHHHHHHHHH
Q 046900 273 VYSLSKDLGLPGFRVGTIYSYNDKVVTTARR---------MSSF-TLIS-----SQTQYLLASMLSNKKFTENYIKTNRE 337 (442)
Q Consensus 273 ~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~---------~~~~-~~~s-----~~~q~~~~~~l~~~~~~~~~~~~~~~ 337 (442)
..|.+|.++ ....+||++..++........ .... ...+ ...+.+....+. .+.+++..+
T Consensus 269 ~~s~HK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G-----~~G~~~~~~ 342 (450)
T d1pmma_ 269 SASGHKFGL-APLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG-----REGYTKVQN 342 (450)
T ss_dssp EEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred ecChhhccC-CCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhh-----HHHHHHHHH
Confidence 679999765 556689999866543221111 0011 0111 122333333332 334567777
Q ss_pred HHHHHHHHHHHHHHhC-CCeeecC---Cc-eEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCC--CCCCE
Q 046900 338 RLQKRYQMIIEGLRSA-GIECLKG---NA-GLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHC--SEPGW 410 (442)
Q Consensus 338 ~~~~~~~~l~~~L~~~-g~~~~~~---~~-g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~--~~~~~ 410 (442)
...+..+++.+.|++. ++++..+ .. -..+.+++.+... .. -+..++...|.++ |..|.. ..+.+ .....
T Consensus 343 ~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~-~~-~~~~~l~~~L~~~-Gw~v~~-~~~p~~~~~~~~ 418 (450)
T d1pmma_ 343 ASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGED-PG-YTLYDLSERLRLR-GWQVPA-FTLGGEATDIVV 418 (450)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCC-CS-SCHHHHHHHHHTT-TCBCCE-EECCTTCTTCEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCccc-CC-CCHHHHHHHHHHc-CCeeec-cCcCCCcCCcEE
Confidence 7888899999999887 5676532 22 2234445443110 01 1355777777655 876532 11111 22357
Q ss_pred EEEEee-cCCHHHHHHHHHHHHHHHHHHHh
Q 046900 411 FRVCFA-NMSEQTLEVALKRIHNFMQKRER 439 (442)
Q Consensus 411 iRls~~-~~~~e~i~~~l~~l~~~l~~~~~ 439 (442)
+|+++. ..++++++++++.|+++++.+++
T Consensus 419 lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~ 448 (450)
T d1pmma_ 419 MRIMCRRGFEMDFAELLLEDYKASLKYLSD 448 (450)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999986 34889999999999999998765
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.70 E-value=4.2e-16 Score=144.93 Aligned_cols=207 Identities=19% Similarity=0.264 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----HhhhcCcEEEEEec
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD----LRWRTGIKIVPIHC 174 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~~G~~v~~v~~ 174 (442)
.|.+.+|+..+ .+..++++++..|+..++.+++++||+|+++.+.|.+.... ++ ..|+++..++.
T Consensus 2 aLE~~la~Leg----------~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~-~~gi~~~~~d~ 70 (331)
T d1pffa_ 2 ALEGKIAKLEH----------AEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLR-KFGVEVDFIDM 70 (331)
T ss_dssp HHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHH-HTTCEEEEECT
T ss_pred HHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHH-hcCeEEEEecc
Confidence 57778888764 56789999999999999999999999999999999765443 44 48999988864
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHH-HhcCcEEEEeccCCcCCCCCCCcc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFA-TRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~-~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
. |.+.+++++++ ++++|++.+|+||+..+.+ ++++++++ +++++++|+|..++...+-
T Consensus 71 ~-------d~~~~~~~i~~------~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~~----- 129 (331)
T d1pffa_ 71 A-------VPGNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT----- 129 (331)
T ss_dssp T-------STTHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC-----
T ss_pred c-------chhhHhhhccc------ccceeeeeccccccccccc---chhhhhhhhcccCceEEeeccccccccc-----
Confidence 3 56888888765 8999999999999999998 55566654 5789999999998742211
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCC-CCceeEEEeecCHHHHHHHHH-cccc--CCCcHHHHHHHHHHhcCchhHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGL-PGFRVGTIYSYNDKVVTTARR-MSSF--TLISSQTQYLLASMLSNKKFTE 329 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~-~G~RiG~i~~~~~~~~~~~~~-~~~~--~~~s~~~q~~~~~~l~~~~~~~ 329 (442)
....+ +--|++.|.+|.++- ...=.|.++..++........ .... ..+++.....+..-+++
T Consensus 130 ~pl~~---------GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T----- 195 (331)
T d1pffa_ 130 NPLDL---------GVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT----- 195 (331)
T ss_dssp CGGGG---------TCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-----
T ss_pred ccccc---------CCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHH-----
Confidence 11122 223889999999853 334457777743333332222 2222 34566666665555543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 330 NYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
+..+.++..++...+.+.|+++
T Consensus 196 --l~~Rm~~~~~nA~~lA~~L~~h 217 (331)
T d1pffa_ 196 --LDMRVKRAAENAQKVAEFLHEH 217 (331)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHHHHHhhhhC
Confidence 3344556667778888999876
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.69 E-value=2.4e-15 Score=144.46 Aligned_cols=296 Identities=15% Similarity=0.153 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCC-cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH--HhHhhhcCcEEEEEec
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLN-RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD--RDLRWRTGIKIVPIHC 174 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~-~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~--~~~~~~~G~~v~~v~~ 174 (442)
.+.|+.++++++ ++.. .|+++.|+|.+++.++..+..+|+.|++..-.+.... ..+. ..+...+.+..
T Consensus 53 ~~~r~~L~~ll~--------~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~~-~~~~~~~~~~~ 123 (388)
T d2ch1a1 53 DEVKDGLRYIFQ--------TENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSE-RYGADVRTIEG 123 (388)
T ss_dssp HHHHHHHHHHHT--------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-HTTCEEEEEEC
T ss_pred HHHHHHHHHHhC--------CCCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccchhhhh-hhccccccccc
Confidence 455555555554 3444 4666778999999999999999999998876664432 2344 47888877776
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCccc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVS 254 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s 254 (442)
.+.. ..+.+.+++..... ++++++++.-+|.||...+ ++++.++|++++.++++|.+.+.. .. ...
T Consensus 124 ~~~~--~~~~~~~~~~~~~~-----~~~~v~~~~~~t~tG~~~~---~~~i~~~~~~~~~~~~vD~~ss~g---~~-pid 189 (388)
T d2ch1a1 124 PPDR--PFSLETLARAIELH-----QPKCLFLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVASLC---GV-PFY 189 (388)
T ss_dssp CTTS--CCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTBT---TB-CCC
T ss_pred cccc--ccchhhhhhhhccC-----Ccceeeeeecccccccccc---hhhhcchhccccceeeeeeeeccc---cc-ccc
Confidence 6533 35667777766543 7889999999999999999 567777888999999999998842 21 222
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc-------------------------ccCC
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS-------------------------SFTL 309 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~-------------------------~~~~ 309 (442)
+.. .+..+++.|-.|.++.| --+|+++.. +...+...... ..+.
T Consensus 190 ~~~---------~~~d~~~~s~~K~~~gp-~G~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 258 (388)
T d2ch1a1 190 MDK---------WEIDAVYTGAQKVLGAP-PGITPISIS-PKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHT 258 (388)
T ss_dssp TTT---------TTCCEEECCCC-CCCCC-SSCEEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCC
T ss_pred hhc---------cCceEEEEccccccCCC-CeEEEEecc-HHHHHhhhcccCccccccccchhhhhhhcccccccccCcc
Confidence 222 24446778889987422 236787774 44333322110 0111
Q ss_pred CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC----CceEEEEEecCCcccccChhhHHHH
Q 046900 310 ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKG----NAGLFCWMNLSPLLEEQTREGELAL 385 (442)
Q Consensus 310 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~l 385 (442)
.+......+...+.... ........+..++........+...++....+ .+...+.+.+|+..+ +.++
T Consensus 259 ~~~~~i~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~~------~~~l 330 (388)
T d2ch1a1 259 VASNLIFALREALAQIA--EEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVD------WWKV 330 (388)
T ss_dssp CCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCC------HHHH
T ss_pred chHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCCCC------HHHH
Confidence 22222223333332111 11122223333333334444444433333221 123355677776433 6688
Q ss_pred HHHHHHcCcEEEeCCCCCCCCCCCEEEEE-eecC-CHHHHHHHHHHHHHHHHHH
Q 046900 386 WDSMLHEVKLNISPGSSCHCSEPGWFRVC-FANM-SEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 386 ~~~l~~~~gi~v~pg~~f~~~~~~~iRls-~~~~-~~e~i~~~l~~l~~~l~~~ 437 (442)
...|++++||.+.+|... ...+.|||| ++.. ++|+++.+++.|+++|+..
T Consensus 331 ~~~l~~~~gI~v~~G~~~--~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~ 382 (388)
T d2ch1a1 331 SQYAMNNFSLEVQGGLGP--TFGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 382 (388)
T ss_dssp HHHHHHHHCBCCBCCCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCEEEeCCCcc--ccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhh
Confidence 888888889999998653 235689999 5533 6899999999999999874
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.69 E-value=1.6e-14 Score=136.86 Aligned_cols=207 Identities=17% Similarity=0.239 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----HhhhcCcEEEEEe
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRD----LRWRTGIKIVPIH 173 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~~G~~v~~v~ 173 (442)
..|.+.+++..+ .+..++++++..|+..++.+++++||+|++....|.+.... +. ..|+++..++
T Consensus 62 ~~le~~la~LEg----------~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~-~~gi~~~~~d 130 (394)
T d1e5ea_ 62 SNLEGKIAFLEK----------TEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALT-KFGIQVDFIN 130 (394)
T ss_dssp HHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHH-HTTCEEEEEC
T ss_pred HHHHHHHHHHhC----------CcceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhh-ccceeeeccC
Confidence 455555555432 56788999999999999999999999999999999765433 34 4899998887
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHH-hcCcEEEEeccCCcCCCCCCCc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFAT-RKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~-~~~~~vi~De~y~~~~~~~~~~ 252 (442)
.. |.+.+++++++ ++++|++..|+||+..+.+ ++++++.+. ++++++|+|..++...+
T Consensus 131 ~~-------d~~~~~~~i~~------~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~~----- 189 (394)
T d1e5ea_ 131 TA-------IPGEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMI----- 189 (394)
T ss_dssp TT-------STTHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTT-----
T ss_pred CC-------CHHHHHHhhcc------cccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCccc-----
Confidence 43 56788888765 8999999999999999998 666666554 56899999999974332
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHH--Hcccc--CCCcHHHHHHHHHHhcCchh
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTAR--RMSSF--TLISSQTQYLLASMLSNKKF 327 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~--~~~~~--~~~s~~~q~~~~~~l~~~~~ 327 (442)
....++ +--|+++|.+|.++ -..+=.|.+++ +.......+ ..... ..+++...+.+..-+++..
T Consensus 190 ~~Pl~~---------GaDiVvhS~TKy~~GhsDv~~G~v~~-~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~TL~- 258 (394)
T d1e5ea_ 190 TNPVDF---------GVDVVVHSATKYINGHTDVVAGLICG-KADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLN- 258 (394)
T ss_dssp CCGGGG---------TCSEEEEETTTTTTCSSCCCCEEEEE-CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHH-
T ss_pred CCchhc---------CCCEEEechhhhcCCCcccccccccc-hhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchhHH-
Confidence 122223 22388999999985 33344566776 454444333 22222 3467777777777777533
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 328 TENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
.+.++..++...+.+.|+++
T Consensus 259 ------lRm~r~~~nA~~lA~~L~~h 278 (394)
T d1e5ea_ 259 ------IRMKAESENAMKVAEYLKSH 278 (394)
T ss_dssp ------HHHHHHHHHHHHHHHHHHTC
T ss_pred ------HHHHHHHHHHHHHHHHHhhc
Confidence 34455567778888999886
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.69 E-value=2.1e-15 Score=144.17 Aligned_cols=295 Identities=15% Similarity=0.168 Sum_probs=186.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCccC-CCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChH--HhHhhhcCcEEEEEe
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFD-LNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFD--RDLRWRTGIKIVPIH 173 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~-~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~--~~~~~~~G~~v~~v~ 173 (442)
+.+.|+.++++++ ++ ...|++++|++.+++.++..+..+|+++++..-.+.... .... ..+.....+.
T Consensus 53 ~~~~r~~l~~ll~--------~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 123 (377)
T d1vjoa_ 53 MDEIQSLLRYVWQ--------TENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAG-RYGADVRTIS 123 (377)
T ss_dssp HHHHHHHHHHHHT--------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhhhhhhhh-hhcccccccc
Confidence 3455555555553 33 346888888999999999999999999998877665432 2233 3566655555
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
..... ..+.+..+....+. +++++.+++-+|.||...+ ++++.++|+++|.++++|.+++.... ..
T Consensus 124 ~~~~~--~~~~~~~~~~~~~~-----~~~~v~~~~~~~~tg~~~~---i~~i~~~~~~~g~~~~vDa~~~~g~~----~~ 189 (377)
T d1vjoa_ 124 KPWGE--VFSLEELRTALETH-----RPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTSLGGV----PI 189 (377)
T ss_dssp CCTTC--CCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTTTTS----CC
T ss_pred cCCCC--cccchhhhhhhhcC-----cceeeeeeeeeccceeeec---hhhhhhhhhhccceEEEecchhhhhh----hh
Confidence 44322 24555555554442 7788888888999999999 77888888899999999999974221 12
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHccc---------------------c-CCCc
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS---------------------F-TLIS 311 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~---------------------~-~~~s 311 (442)
.+..+ +..+++.|..|.++.|+ .+|+++. .+...+....... . ...+
T Consensus 190 ~~~~~---------~~d~~~~s~~K~~~gp~-g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (377)
T d1vjoa_ 190 FLDAW---------GVDLAYSCSQKGLGCSP-GASPFTM-SSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAP 258 (377)
T ss_dssp CTTTT---------TCSEEECCSSSTTCSCS-SCEEEEE-CHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCC
T ss_pred ccccc---------ccceeeecccccccCCC-EEEEecc-hhhHHhhhhccCCCCcceeeccchhhhccCcccccccccc
Confidence 22222 33467788899875333 4677776 4444433221110 0 1111
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC---CceEEEEEecCCcccccChhhHHHHHHH
Q 046900 312 SQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKG---NAGLFCWMNLSPLLEEQTREGELALWDS 388 (442)
Q Consensus 312 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (442)
......+..+... ..........++.+++.+.+.+.+.+.++....+ .....+.+.+|+... ..++...
T Consensus 259 ~~~~~~l~~~~~~--~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~p~~~~------~~~l~~~ 330 (377)
T d1vjoa_ 259 INLYYALREALRL--IAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVD------GKAVARR 330 (377)
T ss_dssp HHHHHHHHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCC------HHHHHHH
T ss_pred eechhhhHHHHhh--hhhcCchHHHHHHHHHhhhhhhhhhccCceeecChHhcCCeEEEEECCCCCC------HHHHHHH
Confidence 2222222222211 1122245566777778888889998877655422 122344556665432 6788888
Q ss_pred HHHcCcEEEeCCCCCCCCCCCEEEEEe-e-cCCHHHHHHHHHHHHHHHH
Q 046900 389 MLHEVKLNISPGSSCHCSEPGWFRVCF-A-NMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 389 l~~~~gi~v~pg~~f~~~~~~~iRls~-~-~~~~e~i~~~l~~l~~~l~ 435 (442)
|++++||.+..|... ...+.||||. + .-++|++++++++|+++++
T Consensus 331 L~~~~gI~v~~G~~~--~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 331 LLNEHNIEVGGGLGE--LAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp HHHHHCEECEECCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred HHhcCCEEEecCccc--ccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 888889999988653 2457899994 5 2268899999999999874
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=4e-15 Score=141.71 Aligned_cols=210 Identities=19% Similarity=0.219 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---hcCcEEEEEec
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---RTGIKIVPIHC 174 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~~G~~v~~v~~ 174 (442)
..|.++||...+ .+..++++++..|+..++.+++++||+|++....|.+....+.. ..|+++..++.
T Consensus 61 ~~LE~~la~LE~----------~~~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~ 130 (421)
T d2ctza1 61 DVLEKRLAALEG----------GKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSR 130 (421)
T ss_dssp HHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCT
T ss_pred HHHHHHHHHHhC----------CCeEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceeccc
Confidence 455555555543 56788999999999999999999999999999999776554331 48999887754
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCC-cCCCCCCCcc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYS-GSAFSSSEFV 253 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~-~~~~~~~~~~ 253 (442)
+. +.+..++.+++ ++++|++.+|+|||..+.+ +++|+++|+++|+++|+|..++ .... ..
T Consensus 131 ~~------~~~~~~~~~~~------~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~----~~ 191 (421)
T d2ctza1 131 EE------RPEEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYL----LR 191 (421)
T ss_dssp TC------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTS----CC
T ss_pred cc------CcchhccccCC------CceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEeccccccccee----cc
Confidence 32 23455555443 8999999999999999988 8888999999999999999997 2111 11
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHH-------------------------------HHHHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDK-------------------------------VVTTA 301 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~-------------------------------~~~~~ 301 (442)
+ ..+ +--|++.|.+|.++-.| .=.|.++..++. +.+..
T Consensus 192 P-l~~---------GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (421)
T d2ctza1 192 P-LAW---------GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKAR 261 (421)
T ss_dssp G-GGG---------TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHH
T ss_pred c-ccc---------CCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHH
Confidence 1 222 33388999999986444 334555543211 11111
Q ss_pred H-Hcccc-CCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 302 R-RMSSF-TLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 302 ~-~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
. ..... ..+++...+.+..-+++.. -+.++..++...+.+.|+++
T Consensus 262 ~~~~~~~G~~~sP~~a~l~~rgl~TL~-------lRm~~~~~nA~~vA~~L~~h 308 (421)
T d2ctza1 262 VDGLRDQGQALGPFEAWVVLLGMETLS-------LRAERHVENTLHLAHWLLEQ 308 (421)
T ss_dssp HTHHHHHCCCCCHHHHHHHHHHHTTHH-------HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccCCCCHHHHHHHhcCCcchh-------hHHHHHHHHHHHHHhhhccC
Confidence 0 11112 3467777777777777533 33445566777888888876
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.69 E-value=2.8e-15 Score=146.97 Aligned_cols=319 Identities=14% Similarity=0.138 Sum_probs=212.4
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCCc-----cCCCcEEEecChHHHHHHHHHhhcC----------CC---------Ce
Q 046900 91 FQDYHGLKSFRQAMASFMEQIRGGRAK-----FDLNRIVVTAGATAANELLTFILAD----------PG---------DA 146 (442)
Q Consensus 91 Y~~~~g~~~lr~~ia~~l~~~~~~~~~-----~~~~~i~~t~G~~~ai~~~~~~l~~----------~g---------d~ 146 (442)
|........+...+.+|+.+..|.+.. .....-++|+|+++++..++.+..+ .| -.
T Consensus 105 ~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~v 184 (476)
T d1js3a_ 105 WAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLV 184 (476)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEE
T ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceE
Confidence 333445688999999999999874321 1123578999999998887654321 11 14
Q ss_pred EEEcCCCCcChHHhHhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHH
Q 046900 147 LLVPTPYYPGFDRDLRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELL 226 (442)
Q Consensus 147 Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~ 226 (442)
|++++-+|..+..++.. .|..+..+|.++ ++.+|+++|++.|++....+..+-+|+.+..++.||.+-+ +++|+
T Consensus 185 v~~s~~~H~Si~ka~~~-lGl~~~~v~~d~--~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp---l~~I~ 258 (476)
T d1js3a_ 185 AYASDQAHSSVERAGLI-GGVKLKAIPSDG--KFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN---LLEVG 258 (476)
T ss_dssp EEEETTCCHHHHHHHHH-HTCEEEEECCCT--TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHH
T ss_pred EEecccccHHHHHHHHh-cCceEEEeccCC--CCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc---HHHHH
Confidence 77888899999999985 899999999875 5689999999999988777777777888889999999988 88888
Q ss_pred HHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHH-HHH--
Q 046900 227 DFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT-ARR-- 303 (442)
Q Consensus 227 ~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~-~~~-- 303 (442)
++|++|++|+.+|.+|+.+..-.........-... -+ -+..+++|.++.| ..+|.++..+...... +..
T Consensus 259 ~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~-----aD--Sit~d~HK~l~~P-~~~g~~l~r~~~~~~~~~~~~~ 330 (476)
T d1js3a_ 259 PICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEF-----AD--SFNFNPHKWLLVN-FDCSAMWVKRRTDLTGAFKLDP 330 (476)
T ss_dssp HHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGG-----CS--EEEECHHHHSSCC-SSCEEEEESCHHHHHGGGC---
T ss_pred HHHHhcCcEEEEecccchhhhhhcchhhhhcCCcc-----cc--eeeecCccccccC-CcceeecccchHHHHHHHhcCh
Confidence 89999999999999998755433332222211111 11 3456899998745 5678888766443321 100
Q ss_pred -----c----------ccc-CC----CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec-CC
Q 046900 304 -----M----------SSF-TL----ISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK-GN 361 (442)
Q Consensus 304 -----~----------~~~-~~----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~ 361 (442)
. ... .. ...+..++....+. .+.+++..+...+..+++.+.|++. ++++.. |.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G-----~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~ 405 (476)
T d1js3a_ 331 VYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG-----VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT 405 (476)
T ss_dssp ---------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCC
T ss_pred hhhccccccccccccccccccccchhhHHHHHHHHHHHHh-----HhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCc
Confidence 0 000 00 11233333333333 3345666677777888999999887 788764 45
Q ss_pred ceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeec--CCHHHHHHHHHHHHHHHHHH
Q 046900 362 AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFAN--MSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 362 ~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~e~i~~~l~~l~~~l~~~ 437 (442)
-+ .+.+++.... .-..++.+++.+...+.+.+... .+..++|+++.+ .++++++.+++.|+++.+++
T Consensus 406 l~-iV~Fr~~~~d-----~~n~~l~~~l~~~G~~~~s~t~~---~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~l 474 (476)
T d1js3a_ 406 LG-LVCFRLKGSD-----GLNEALLERINSARKIHLVPCRL---RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (476)
T ss_dssp SS-EEEEEESSCH-----HHHHHHHHHHHHHTSCBCEEEEE---TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eE-EEEEEccCCh-----HHHHHHHHHHHhcCCEEEeeeeE---CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 55 4545554321 11356777877773344444221 234589999873 27889999999999988765
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=2.5e-15 Score=148.04 Aligned_cols=323 Identities=12% Similarity=0.125 Sum_probs=193.3
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeE---------EEcCCCCcChHHh
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDAL---------LVPTPYYPGFDRD 160 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~V---------l~~~p~y~~~~~~ 160 (442)
.|+...+..+|+++++++++ .+.++.++++++|+..++.+++++||.+ ......|......
T Consensus 69 ~Y~~~~~~~~le~~~a~l~G----------~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~ 138 (467)
T d2v1pa1 69 AFSGSRSYYALAESVKNIFG----------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGH 138 (467)
T ss_dssp CSSSCHHHHHHHHHHHHHTC----------CSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHH
T ss_pred hhcCCchHHHHHHHHHHHHC----------CCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHH
Confidence 47777778899999988864 5678899999999999999987766544 3334444444455
Q ss_pred HhhhcCcEEEEEecCCCC--------CCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC-CcCCCHHHHHHHHHHHHh
Q 046900 161 LRWRTGIKIVPIHCDSSN--------NFQITPQALEAAYKEAESKDMRVRGVLITNPSNPL-GATIQRSVLEELLDFATR 231 (442)
Q Consensus 161 ~~~~~G~~v~~v~~~~~~--------~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPt-G~~~~~~~l~~l~~~~~~ 231 (442)
+.. .|+.++.++.+... ...+|++.|++.+++..+ ..++++++.+.+|.. |.+++.+.+++|.++|++
T Consensus 139 ~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~--~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~ 215 (467)
T d2v1pa1 139 SQI-NGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP--NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHH-TTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCG--GGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred HHH-cCCeeeecccccccccccccccccCCCHHHHHHHHhhcCc--cccceeeecceeeccccccCCHHHHHHHHHHHHH
Confidence 553 89999888765321 346899999999987532 246677777777754 688899999999999999
Q ss_pred cCcEEEEeccCCcCC-------CCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH-
Q 046900 232 KNIHLVSDEIYSGSA-------FSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR- 303 (442)
Q Consensus 232 ~~~~vi~De~y~~~~-------~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~- 303 (442)
||+++++|+++.... ..+....++.....+.. ....++..|.+|.++ |...|+++..++.+....+.
T Consensus 216 ~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~d~~s~s~~K~~~--~~~gg~i~~~~~~~~~~~~~~ 290 (467)
T d2v1pa1 216 YDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY---KYADMLAMSAKKDAM--VPMGGLLCMKDDSFFDVYTEC 290 (467)
T ss_dssp TTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG---GGCSEEEEESSSTTC--CSSCEEEEECSGGGHHHHHHH
T ss_pred cCCEEEEechhhhccccccccccccccCCcccccchhhc---ccCCEEEecCCCCCC--CCCceeEEecchhhhhHHHhh
Confidence 999999999975210 00111223333322210 122345568888775 34567877765554433321
Q ss_pred --c----c---ccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEE-E--ecC
Q 046900 304 --M----S---SFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCW-M--NLS 371 (442)
Q Consensus 304 --~----~---~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~-~--~~~ 371 (442)
. . .....+.....+....+.... ..+++ ++..++.+++.+.|.+.++.+.++.+....+ . .++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~----~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~ 365 (467)
T d2v1pa1 291 RTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM-NLDWL----AYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLP 365 (467)
T ss_dssp HHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTT-CHHHH----HHHHHHHHHHHHHHHHTTCCEEEECSSCEEEEHHHHST
T ss_pred cccccccccCcchhhhHHHHHHHHHHHhHHhh-hHHHH----HHHHHHHHHHHHHHHhcCCcccCCCccceeecchhhcC
Confidence 1 1 112223333333332222111 12222 3334566788888888877665433322221 1 122
Q ss_pred CcccccChhhHHHHHHHHHHcCcEEEeCCCCC-----------CCCCCCEEEEEee--cCCHHHHHHHHHHHHHHHHHH
Q 046900 372 PLLEEQTREGELALWDSMLHEVKLNISPGSSC-----------HCSEPGWFRVCFA--NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 372 ~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f-----------~~~~~~~iRls~~--~~~~e~i~~~l~~l~~~l~~~ 437 (442)
...... + ....+...++.++||.......+ .......+|+++. ..++|+++.++++|++++++.
T Consensus 366 ~~~~~~-~-~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~ 442 (467)
T d2v1pa1 366 HIPADQ-F-PAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_dssp TSCGGG-C-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred Ccchhh-h-hhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 211111 1 23455566666668864321110 0112357999875 348999999999999998643
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.68 E-value=3.2e-15 Score=141.03 Aligned_cols=293 Identities=13% Similarity=0.088 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcC--hHHhHhhhcCcEEEEEecC
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPG--FDRDLRWRTGIKIVPIHCD 175 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~--~~~~~~~~~G~~v~~v~~~ 175 (442)
.++.+.+.+.+.+.++ .+.+.+++++|+|.+++.++..++.+||+|++..-++.+ +...++ .+|.++..+..+
T Consensus 32 ~~i~~~~~~~l~~ll~----~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~~~~~~a~-~~~~~~~~~~~~ 106 (348)
T d1iuga_ 32 REVFLKARGLLREAFR----TEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIAL-EAGLVVERLDYP 106 (348)
T ss_dssp HHHHHHHHHHHHHHHT----CSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH-HTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHhC----CCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHHHHHHHHH-hcCccccccccc
Confidence 3444444444444443 456778899999999999999999999999988766433 334455 488888877765
Q ss_pred CCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhc--CcEEEEeccCCcCCCCCCCcc
Q 046900 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK--NIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 176 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~--~~~vi~De~y~~~~~~~~~~~ 253 (442)
... .++++.+. ..+++.+++++..+.||...+ +++|.++|+++ +.++++|.+.+.. .. ..
T Consensus 107 ~g~--~~~~~~~~---------~~~~~~v~~~h~eTstG~~~~---i~~i~~~~~~~~~~~l~~vDavss~g---~~-~i 168 (348)
T d1iuga_ 107 YGD--TPRPEDVA---------KEGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTSLL---VG-EV 168 (348)
T ss_dssp TTC--CCCTTTSC---------CSSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTTBT---TB-CC
T ss_pred CCC--cccccccc---------ccCCCeeEEEecchhhhhhcc---HHHHHHHHHhhhccceeechhhhccc---cc-cc
Confidence 432 23333321 237788999999999999999 56666777676 4788999988742 21 12
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccC-CCCCceeEEEeecCHHHHHHH-------------H---HccccCCCcHHHHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDL-GLPGFRVGTIYSYNDKVVTTA-------------R---RMSSFTLISSQTQY 316 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~G~RiG~i~~~~~~~~~~~-------------~---~~~~~~~~s~~~q~ 316 (442)
.+... +--+++.|-.|.+ |.|| +|+++.+++ ..+.+ + ....+++.+.....
T Consensus 169 ~~d~~---------~iD~~~~~sqK~l~gppG--~~~v~~s~~-~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~ 236 (348)
T d1iuga_ 169 ALEAM---------GVDAAASGSQKGLMCPPG--LGFVALSPR-ALERLKPRGYYLDLARELKAQKEGESAWTPAINLVL 236 (348)
T ss_dssp CSGGG---------TCSEEEEESSSTTCCCSC--EEEEEECHH-HHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHH
T ss_pred ccccc---------cCCEEEeccccceecCCc--eeeeeechH-HHhhhcccccccchhhhhhhhccCcccccccchHHH
Confidence 22111 2336778999998 7777 699988443 32211 1 11223444445555
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC-ceEEEEEecCCcccccChhhHHHHHHHHHHcCcE
Q 046900 317 LLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGN-AGLFCWMNLSPLLEEQTREGELALWDSMLHEVKL 395 (442)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi 395 (442)
++.+.|+... .+ ..+..+..+..++.+...++..|++..+.. ..-...+.+|+..+ ..++.+.|. ++||
T Consensus 237 ~l~~aL~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~P~g~~------~~~~~~~l~-~~gi 306 (348)
T d1iuga_ 237 AVAAVLEEVL--PR-LEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVP------YARVKEAFA-QRGA 306 (348)
T ss_dssp HHHHHHHHHG--GG-HHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCC------HHHHHHHHH-TTTE
T ss_pred HHHHHHHHHH--HH-HhHHHHHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEECCCCCC------HHHHHHHHH-HCCe
Confidence 5555554211 11 122222333344555555666688765422 11245567776543 567777774 5599
Q ss_pred EEeCCCCCCCCCCCEEEEEe-ecCCHHHHHHHHHHHHHHHHHH
Q 046900 396 NISPGSSCHCSEPGWFRVCF-ANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 396 ~v~pg~~f~~~~~~~iRls~-~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.+.+|.. ......|||+. +..+.++++++++.|++++++.
T Consensus 307 ~i~~G~~--~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 307 VIAGGQG--PLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp ECEECCG--GGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCcc--ccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9988753 23346899975 3458999999999999999874
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=4.2e-15 Score=140.82 Aligned_cols=217 Identities=14% Similarity=0.139 Sum_probs=144.4
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhh---hcC
Q 046900 90 LFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---RTG 166 (442)
Q Consensus 90 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~---~~G 166 (442)
.|+.. | .+-++.+.+.+....+ .+..++++++..|+..++ .++.+||+|++....|.+....+.. ..|
T Consensus 48 ~YsR~-g-nPT~~~lE~~la~LE~------~~~a~~~sSGmaAi~~~l-~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~g 118 (393)
T d1n8pa_ 48 EYSRS-Q-NPNRENLERAVAALEN------AQYGLAFSSGSATTATIL-QSLPQGSHAVSIGDVYGGTHRYFTKVANAHG 118 (393)
T ss_dssp CBTTT-C-CHHHHHHHHHHHHHTT------CSEEEEESCHHHHHHHHH-HTSCSSCEEEEESSCCHHHHHHHHHTSTTTC
T ss_pred eeeCC-C-ChHHHHHHHHHHHHhC------CceEEEecCchhHHHhhh-hcccCCCeeeeeeeecccchhhhhhhhhccc
Confidence 35543 3 2344444444444322 466778888888987665 6668899999999999876555432 367
Q ss_pred cEEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHH----hcCcEEEEeccC
Q 046900 167 IKIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFAT----RKNIHLVSDEIY 242 (442)
Q Consensus 167 ~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~----~~~~~vi~De~y 242 (442)
.++..++ .+.+++++++++ ++++|++..|.||+..+.+ +++|+++|+ ++|+++|+|..+
T Consensus 119 i~~~~~~--------~~~~~~~~~i~~------~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~ 181 (393)
T d1n8pa_ 119 VETSFTN--------DLLNDLPQLIKE------NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTF 181 (393)
T ss_dssp SCCEEES--------SHHHHHHHHSCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTT
T ss_pred ceeEEee--------cchHHHHHHhhh------hcceeEecCcchhhhhccc---hhhhhhhhhhhcccCCceEEEecCc
Confidence 7766653 245678777654 8999999999999999999 666666666 779999999998
Q ss_pred CcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC-CCCceeEEEeecCHHHHHHHHHcccc--CCCcHHHHHHHH
Q 046900 243 SGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARRMSSF--TLISSQTQYLLA 319 (442)
Q Consensus 243 ~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~ 319 (442)
+...+- ....+ +--|++.|++|.++ -..+=.|.++..++.+.+.++..... ..+++...+.+.
T Consensus 182 atP~~~-----~Pl~~---------GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~ 247 (393)
T d1n8pa_ 182 LSPYIS-----NPLNF---------GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTH 247 (393)
T ss_dssp THHHHC-----CGGGG---------TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred cCcccC-----Cchhh---------CCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHH
Confidence 742211 11122 23388999999984 33466688777667666655543332 345777777777
Q ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 046900 320 SMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA 353 (442)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 353 (442)
.-+++.. .+.++..++...+.+.|+..
T Consensus 248 rgl~Tl~-------lR~~~~~~nA~~lA~~L~~~ 274 (393)
T d1n8pa_ 248 RGLKTLH-------LRVRQAALSANKIAEFLAAD 274 (393)
T ss_dssp HHHTTHH-------HHHHHHHHHHHHHHHHHTSC
T ss_pred hCCcchh-------hHHHHHHHHHHHHHHHHHhc
Confidence 7777533 23344455667777888653
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=1.4e-14 Score=138.70 Aligned_cols=301 Identities=11% Similarity=0.061 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc---CCCCeEEEcCCCCcCh--HHhHhhhcCcEEEEEe
Q 046900 99 SFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA---DPGDALLVPTPYYPGF--DRDLRWRTGIKIVPIH 173 (442)
Q Consensus 99 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~---~~gd~Vl~~~p~y~~~--~~~~~~~~G~~v~~v~ 173 (442)
++.+.+.+-+.+..+...+.+++.|++|+|+|++++.++..|. ++||+|++..-.+... ...++ ..|..+..+.
T Consensus 36 ~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~-~~~~~~~~~~ 114 (382)
T d2bkwa1 36 SIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLR-SYGAQVDVVR 114 (382)
T ss_dssp HHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHH-HTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhcc-cccccccccc
Confidence 3333344444444432234567789999999999999999986 5799999987665442 23344 3777776665
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhc--CcEEEEeccCCcCCCCCCC
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRK--NIHLVSDEIYSGSAFSSSE 251 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~--~~~vi~De~y~~~~~~~~~ 251 (442)
..+ .+...+.+.+++.+.+ .++++++++..+|.||...+.+ .+.+.|+++ ++++++|.+.+- +. .
T Consensus 115 ~~~-~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~tg~~~~~~---~~~~~~~~~~~~~~~~vDa~qs~---g~-~ 181 (382)
T d2bkwa1 115 PLK-IGESVPLELITEKLSQ-----NSYGAVTVTHVDTSTAVLSDLK---AISQAIKQTSPETFFVVDAVCSI---GC-E 181 (382)
T ss_dssp CSS-TTSCCCHHHHHHHHHH-----SCCSEEEEESEETTTTEECCHH---HHHHHHHHHCTTSEEEEECTTTT---TT-S
T ss_pred ccC-CCCccchhHHHHHhhh-----ccchheeeeeccccccccccch---hhhhhccccccceeeeeeccccc---cc-c
Confidence 433 2345778888888765 3778899999999999999955 445555444 699999999884 22 2
Q ss_pred cccHHHHHhhhcCCCCCcEEEEecCcccC-CCCCceeEEEeecCHHHHHHHHHc--------------------------
Q 046900 252 FVSIAEILEARQYKDSERVHIVYSLSKDL-GLPGFRVGTIYSYNDKVVTTARRM-------------------------- 304 (442)
Q Consensus 252 ~~s~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~G~RiG~i~~~~~~~~~~~~~~-------------------------- 304 (442)
+..+... +--+++.|-.|.+ |.+| +|+++.. +.+.+.+...
T Consensus 182 pid~~~~---------giD~~~~s~~K~l~gP~G--~g~l~vs-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (382)
T d2bkwa1 182 EFEFDEW---------GVDFALTASQKAIGAPAG--LSISLCS-SRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAG 249 (382)
T ss_dssp CCCTTTT---------TCSEEEEESSSTTCCCSC--EEEEEEC-HHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTT
T ss_pred ccccccc---------CeeEEeecccccCcCCCc--hhhhhcc-HHHHhhhhhcccCCCcccchhhhhhhhhhhhccccc
Confidence 2232222 3347788999998 6666 6999884 4433322110
Q ss_pred --cccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec---CC--ceEEEEEecCCcccc
Q 046900 305 --SSFTLISSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK---GN--AGLFCWMNLSPLLEE 376 (442)
Q Consensus 305 --~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~---~~--~g~~~~~~~~~~~~~ 376 (442)
..+++.+...-.++...|+. ..++-+....++.++.++++.+.+.+. ++.... +. ....+.+.+++
T Consensus 250 ~~~~~~Tp~~~~i~al~~aL~~--~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~---- 323 (382)
T d2bkwa1 250 KGAYFATPPVQLINSLDVALKE--ILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD---- 323 (382)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC----
T ss_pred ccccccCCcHHHHHHHHHHHHH--HHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCC----
Confidence 11123333344444444432 112224445555666677777777653 333221 11 11233455554
Q ss_pred cChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEE-eecC-CHHHHHHHHHHHHHHHHHHH
Q 046900 377 QTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVC-FANM-SEQTLEVALKRIHNFMQKRE 438 (442)
Q Consensus 377 ~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls-~~~~-~~e~i~~~l~~l~~~l~~~~ 438 (442)
..++.+.| +++||.+..|..-. ...+.|||+ ++.. ++++++.+++.|..+...++
T Consensus 324 -----~~~~~~~L-~~~gi~i~~G~~~~-~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~ 380 (382)
T d2bkwa1 324 -----PPDVIAFL-KSHGVVIAGGIHKD-IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 380 (382)
T ss_dssp -----HHHHHHHH-HHTTEECBCCCCTT-TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHH-HHCCeEEECCCChh-hcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34566655 55699999875421 234789998 5521 45667777777765544443
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.63 E-value=3.9e-14 Score=134.83 Aligned_cols=348 Identities=13% Similarity=0.085 Sum_probs=210.1
Q ss_pred ceeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCCcEEEecC
Q 046900 49 GVIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAG 128 (442)
Q Consensus 49 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G 128 (442)
.-|+|-..||..++. +.+++....... +.+| +.....|+...-..++.....+...+.++....+.--+|-.- +
T Consensus 32 ~~l~LIaSEN~~S~~-v~~algS~l~nk-YaeG---~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~-S 105 (470)
T d1rv3a_ 32 VGLELIASENFASRA-VLEALGSCLNNK-YSLG---YPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPY-S 105 (470)
T ss_dssp SSEECCTTCCCCCHH-HHHHHTSGGGTC-CCCE---ETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCS-S
T ss_pred cCceEecCCCcCCHH-HHHHhcchhccc-ccCC---CCCccccCCchhHHHHHHHHHHHHHHHhCCChhhcccccccc-C
Confidence 347888888877643 333333221100 0001 111223444333455655566666776652111111234333 4
Q ss_pred hHHHHHHHHHhhcCCCCeEEEcCCCCcChHHh----------HhhhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcC
Q 046900 129 ATAANELLTFILADPGDALLVPTPYYPGFDRD----------LRWRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKD 198 (442)
Q Consensus 129 ~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~----------~~~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 198 (442)
++.|...++.+|++|||+|+..+....++... +. ....+.+.++++.+ ...+|.|++++..++.
T Consensus 106 Gs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~-~~~~~~~~y~v~~~-~~~IDyd~l~~~a~~~---- 179 (470)
T d1rv3a_ 106 GSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISAT-SIFFESMAYKVNPD-TGYIDYDRLEENARLF---- 179 (470)
T ss_dssp HHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHH-HHHSEEEEECBCTT-TCSBCHHHHHHHHHHH----
T ss_pred CccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccc-cceeEeeEEEEecc-cCcccHHHHHHHHHhh----
Confidence 57788888999999999999987766554321 11 12357888888865 3569999999999875
Q ss_pred CceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcc
Q 046900 199 MRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSK 278 (442)
Q Consensus 199 ~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK 278 (442)
++|+|++..-.+|- .++ .+++.++|.+.+.+++.|-+|......+..+.+.... . -++.+|.+|
T Consensus 180 -kPklIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~---------a-Dvvt~tTHK 243 (470)
T d1rv3a_ 180 -HPKLIIAGTSCYSR--NLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEH---------C-HVVTTTTHK 243 (470)
T ss_dssp -CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGT---------C-SEEEEESSG
T ss_pred -CcceEeechhhccc--cCC---HHHHHHHHhccCCeEEecchhhhhhccccccCChhhe---------e-eeeeeehhh
Confidence 88887775444443 234 6777788889999999999987432223333333322 1 267899999
Q ss_pred cCCCCCceeEEEeecCH--------------HHHHHHHHccccCC-CcH-HHHHH-HHHHhcCchhHHHHHHHHHHHHHH
Q 046900 279 DLGLPGFRVGTIYSYND--------------KVVTTARRMSSFTL-ISS-QTQYL-LASMLSNKKFTENYIKTNRERLQK 341 (442)
Q Consensus 279 ~~g~~G~RiG~i~~~~~--------------~~~~~~~~~~~~~~-~s~-~~q~~-~~~~l~~~~~~~~~~~~~~~~~~~ 341 (442)
+| +|-|.|.|.+..+ .+.+.+.+..-++. .++ ..+.+ .+..+. +......+...++..+
T Consensus 244 tl--rGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~--ea~~~~fk~Ya~qvv~ 319 (470)
T d1rv3a_ 244 TL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALK--QAMTPEFKEYQRQVVA 319 (470)
T ss_dssp GG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHH--HHTSHHHHHHHHHHHH
T ss_pred hc--cCCcceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHH--HhcChHHHHHHHHHHH
Confidence 98 7889999998543 35555655443322 122 11111 111121 1111123566777888
Q ss_pred HHHHHHHHHHhCCCeeec-CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe----CCCCCCCCCCCEEEEEee
Q 046900 342 RYQMIIEGLRSAGIECLK-GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS----PGSSCHCSEPGWFRVCFA 416 (442)
Q Consensus 342 ~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~----pg~~f~~~~~~~iRls~~ 416 (442)
+.+.|.+.|.+.|+++.. ...+..+++++..... ....+++++++.||.+. |+.. .+..+..+||+..
T Consensus 320 NAk~La~~L~~~G~~v~~ggTdnHlvlvdl~~~g~------~g~~ae~~Le~~gI~~Nkn~iP~D~-~~~~~sGiRiGT~ 392 (470)
T d1rv3a_ 320 NCRALSAALVELGYKIVTGGSDNHLILVDLRSKGT------DGGRAEKVLEACSIACNKNTCPGDK-SALRPSGLRLGTP 392 (470)
T ss_dssp HHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTC------CHHHHHHHHHHTTEECEEECCSSCS-CTTSCCEEEEECH
T ss_pred HHHHHHHHHHhCCceeccCCCCCceEEEeecccCC------cHHHHHHHHHHcCcEECCCcCCCCC-CCCCCCeeEecCH
Confidence 899999999999999864 3344567778754211 12345666788899875 5542 1223456999975
Q ss_pred -----cCCHHHHHHHHHHHHHHHH
Q 046900 417 -----NMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 417 -----~~~~e~i~~~l~~l~~~l~ 435 (442)
.+.++++++..+.|.++++
T Consensus 393 alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 393 ALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3478889988888888775
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.63 E-value=5.5e-14 Score=134.51 Aligned_cols=291 Identities=15% Similarity=0.235 Sum_probs=186.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD 175 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~ 175 (442)
...+++.+|+|++ ...++.++++|.|+.+++.+| +++||.|++|..+|+....++.. .|++++.++.+
T Consensus 36 v~~fE~~~a~~~g----------~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai~~-~g~~p~~~d~~ 104 (384)
T d1b9ha_ 36 VNSFEREFAAHHG----------AAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQR-LGAVTVPVDVD 104 (384)
T ss_dssp HHHHHHHHHHHTT----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHH-TTCEEEEECBC
T ss_pred HHHHHHHHHHHHC----------cCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEeccccccccccccc-ccccccccccc
Confidence 5788888888865 556889999999999999988 78999999999999999988884 99999999987
Q ss_pred CCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCC-CCCCccc
Q 046900 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAF-SSSEFVS 254 (442)
Q Consensus 176 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~-~~~~~~s 254 (442)
+ ..+.+|++.+++.+.. ++++|++ .+..|.... +.++.++|++++++||+|.+++.... .+..
T Consensus 105 ~-~~~~~d~~~~~~~i~~------~tk~i~~---~~~~g~~~d---~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~--- 168 (384)
T d1b9ha_ 105 A-ATYNLDPEAVAAAVTP------RTKVIMP---VHMAGLMAD---MDALAKISADTGVPLLQDAAHAHGARWQGKR--- 168 (384)
T ss_dssp T-TTCCBCHHHHHHHCCT------TEEEECC---BCGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTEE---
T ss_pred c-cccccchhhhcccccc------ccccccc---ccccccccc---cccchhhhhhhhhhhhhhhceecccccCCEe---
Confidence 5 4578999999998754 8888764 466666666 67888899999999999999985332 1211
Q ss_pred HHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcccc-------------------CCCcHHHH
Q 046900 255 IAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF-------------------TLISSQTQ 315 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~-------------------~~~s~~~q 315 (442)
...+ .+-.++-.+.+|.++ .| ..|.++++++.+.+.++..... +.++.+..
T Consensus 169 ~g~~--------g~~~~~Sf~~~K~i~-~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~A 238 (384)
T d1b9ha_ 169 VGEL--------DSIATFSFQNGKLMT-AG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSA 238 (384)
T ss_dssp GGGS--------SSCEEEECCTTSSSC-SS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHH
T ss_pred cCcc--------cccceeccccccccc-cc-ccchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchh
Confidence 1111 122333345588875 33 4788888777776665443211 11344433
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec----C-Cc-eEEEEEecCCcccccChhhHHHHHHH
Q 046900 316 YLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK----G-NA-GLFCWMNLSPLLEEQTREGELALWDS 388 (442)
Q Consensus 316 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~----~-~~-g~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (442)
+.+..-|+. +++..+.-+++.+++.+.|.+. ++.... . .. .++..+.++.... ....++.+.
T Consensus 239 aig~~qL~~-------ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~Rd~l~~~ 307 (384)
T d1b9ha_ 239 SVLRAQLAR-------LDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTE----ERRNALVDR 307 (384)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCH----HHHHHHHHH
T ss_pred hhhhhhhhh-------cccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceeccccc----ccHHHHHHH
Confidence 333333432 2233333345566777777764 443221 1 11 1223333443211 124568888
Q ss_pred HHHcCcEEEeCCCC----------CCCCC-----------------CCEEEEEee-cCC-HHHHHHHHHHHHHHHHH
Q 046900 389 MLHEVKLNISPGSS----------CHCSE-----------------PGWFRVCFA-NMS-EQTLEVALKRIHNFMQK 436 (442)
Q Consensus 389 l~~~~gi~v~pg~~----------f~~~~-----------------~~~iRls~~-~~~-~e~i~~~l~~l~~~l~~ 436 (442)
|.++ ||.+.+.-. ++... ...+.|-+. .++ +++++..++.|++++++
T Consensus 308 L~~~-GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 308 LVEA-GLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 383 (384)
T ss_dssp HHHT-TCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHC-CCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 8665 998875311 00000 023555543 445 57899999999998865
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.63 E-value=1.2e-14 Score=140.84 Aligned_cols=341 Identities=14% Similarity=0.151 Sum_probs=193.2
Q ss_pred CCCCCCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|.-+.+...+||+..+ .+.++ ++.+.+.+.++.+. ...+.. ...+...+++.+....+
T Consensus 44 ~~l~D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~------------~~~~~~---~~~~~~~la~~~~~~~~-- 106 (427)
T d2gsaa_ 44 AYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEK------------GTSFGA---PCALENVLAEMVNDAVP-- 106 (427)
T ss_dssp TEEEETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTT------------CSCCSS---CCHHHHHHHHHHHHHST--
T ss_pred CEEEECCCCEEEEechhHHHHhccCCcHHHHHHHHHHHHh------------cCcccc---chhHHHHHHHHHHhhCC--
Confidence 34445667888998765 33343 45666665544321 111111 13455667777765432
Q ss_pred CccCCCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhh-------cCc------------EEEEEec
Q 046900 116 AKFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWR-------TGI------------KIVPIHC 174 (442)
Q Consensus 116 ~~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~-------~G~------------~v~~v~~ 174 (442)
..+.+++++++++|++.+++... .....|+...-+|.+....+... .+. +...++
T Consensus 107 ---~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~- 182 (427)
T d2gsaa_ 107 ---SIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP- 182 (427)
T ss_dssp ---TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC-
T ss_pred ---ccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC-
Confidence 34689999999999999987652 23467888878886643222100 111 112222
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 175 DSSNNFQITPQALEAAYKEAESKDMRVRGVLITNP-SNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 175 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
.-|++.+++.+++. ..++.+|++ -| ..-.|.+ .+.+-+++|.++|++||+++|.||++..+. .+. .
T Consensus 183 ------~~~~~~le~~~~~~---~~~iaavi~-Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r-~g~-~ 250 (427)
T d2gsaa_ 183 ------YNDLEAVKALFAEN---PGEIAGVIL-EPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFR-IAY-G 250 (427)
T ss_dssp ------TTCHHHHHHHHTTS---TTTEEEEEE-CSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTT-TBT-T
T ss_pred ------cchHHHHHHHHHhC---CCCeEEEEE-cCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccce-ecc-c
Confidence 13789999988752 235555555 45 3445654 466679999999999999999999998763 343 2
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHcc-----ccCCCcHHHHHHHHHHhc---C
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS-----SFTLISSQTQYLLASMLS---N 324 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~-----~~~~~s~~~q~~~~~~l~---~ 324 (442)
.....+. ..+.+ -+++|.+| .|+.+|.+++ .+++.+.+.... ..+..++++.+++.+.|+ .
T Consensus 251 ~~~~~~g------i~PDi---~~~gK~lg-gG~p~~a~~~-~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~ 319 (427)
T d2gsaa_ 251 GVQEKFG------VTPDL---TTLGKIIG-GGLPVGAYGG-KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ 319 (427)
T ss_dssp CHHHHTT------CCCSE---EEECGGGG-TTSCCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS
T ss_pred chHHhcC------CCHHH---HhhhhccC-CCcceeeeee-hHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhh
Confidence 2222221 12223 35789998 8899999988 666666554311 224456777666666544 3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec-CCceEEEEEecCCccc------ccChhhHHHHHHHHHHcCcEEE
Q 046900 325 KKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLK-GNAGLFCWMNLSPLLE------EQTREGELALWDSMLHEVKLNI 397 (442)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~gi~v 397 (442)
.+. .+++.++.+.+++.. .+...+.++.+.. ..++++-..-...... ....+....+...|+++ ||.+
T Consensus 320 ~~l-~~~~~~~g~~l~~~L---~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~-Gv~l 394 (427)
T d2gsaa_ 320 PGT-YEYLDQITKRLSDGL---LAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYL 394 (427)
T ss_dssp TTH-HHHHHHHHHHHHHHH---HHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEEC
T ss_pred hhH-HhhhhHHHHHHHHHH---HHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHC-CEEE
Confidence 332 223333333333332 2233344443322 2334332211111110 11122234667778777 9999
Q ss_pred eCCCCCCCCCCCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 046900 398 SPGSSCHCSEPGWFRVCFANMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 398 ~pg~~f~~~~~~~iRls~~~~~~e~i~~~l~~l~~~l~~ 436 (442)
.|+.. .. +-+++.. ++++++++++++++++++
T Consensus 395 ~p~~~-----~~-~~~~l~~-Te~dId~~l~al~~al~~ 426 (427)
T d2gsaa_ 395 APSQF-----EA-GFTSLAH-TEEDIDATLAAARTVMSA 426 (427)
T ss_dssp CSSTT-----SC-EECCTTC-CHHHHHHHHHHHHHHHTC
T ss_pred CCCCC-----cc-eeCCCCC-CHHHHHHHHHHHHHHHHh
Confidence 88532 12 2245544 899999999999999864
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.62 E-value=3.3e-14 Score=134.86 Aligned_cols=346 Identities=14% Similarity=0.125 Sum_probs=195.9
Q ss_pred eeeeecccccccHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCCccCCC----cEEE
Q 046900 50 VIQMGLAENQVSFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRAKFDLN----RIVV 125 (442)
Q Consensus 50 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~----~i~~ 125 (442)
-|+|-..||..++. +.+++....... +.+| ++....|+...-..++..-..+...+.++ ++.. ||-.
T Consensus 29 ~l~LiaSEN~~S~~-v~~algS~l~nk-YaeG---~pg~Ryy~G~~~iD~iE~la~~ra~~lF~----~~~a~w~vNVqp 99 (463)
T d2a7va1 29 GLELIASENFCSRA-ALEALGSCLNNK-YSEG---YPGKRYYGGAEVVDEIELLCQRRALEAFD----LDPAQWGVNVQP 99 (463)
T ss_dssp SEECCTTCCCCCHH-HHHHHTSGGGTC-CCCC---------------CTHHHHHHHHHHHHHTT----CCTTTEEEECCC
T ss_pred CeeEeccCCcCCHH-HHHHhcchhccc-ccCC---CCCccccCCchhHHHHHHHHHHHHHHHhC----CCchhccCCccc
Confidence 37888888877643 333333221100 0011 11122243333345666655666666665 4444 4555
Q ss_pred ecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhH------hh-hcC--cEEEEEecCCCCCCcCCHHHHHHHHHHHHh
Q 046900 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDL------RW-RTG--IKIVPIHCDSSNNFQITPQALEAAYKEAES 196 (442)
Q Consensus 126 t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~------~~-~~G--~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~ 196 (442)
-+ ++.|+..++.+|++|||+|+..++...++...- .. ..| .+.+++.++++ +..+|.+++++..++.
T Consensus 100 ~S-Gs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~-~~~IDyd~~~~~a~~~-- 175 (463)
T d2a7va1 100 YS-GSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLF-- 175 (463)
T ss_dssp SS-HHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTT-TCSBCHHHHHHHHHHH--
T ss_pred cc-cHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCC-CCcCcHHHHHHHHhhc--
Confidence 55 566788888999999999998887766553211 00 012 34556666643 3568999999999886
Q ss_pred cCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecC
Q 046900 197 KDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSL 276 (442)
Q Consensus 197 ~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~ 276 (442)
++|+|++..-.+|- .++ .+++.++|.+.|.+++.|-+|......+..+.+.... . -++.+|.
T Consensus 176 ---kPklIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~---------a-Dvvt~tT 237 (463)
T d2a7va1 176 ---RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH---------A-DIVTTTT 237 (463)
T ss_dssp ---CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT---------C-SEEEEES
T ss_pred ---CCceEEeccccccc--ccC---HHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhh---------h-hhhhchh
Confidence 88887775444443 233 6777788889999999999987433333334443322 1 2678899
Q ss_pred cccCCCCCceeEEEeecCH--------------HHHHHHHHccccCC-CcHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 046900 277 SKDLGLPGFRVGTIYSYND--------------KVVTTARRMSSFTL-ISSQTQYLLASMLSNKKFTENYIKTNRERLQK 341 (442)
Q Consensus 277 SK~~g~~G~RiG~i~~~~~--------------~~~~~~~~~~~~~~-~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 341 (442)
+|+| +|-|.|.|.+.++ .+.+.+.+...++. .++....+++.+..-.+......++..++..+
T Consensus 238 HKTl--rGPrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~ 315 (463)
T d2a7va1 238 HKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLK 315 (463)
T ss_dssp SGGG--CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred hhhh--cCCCceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 9998 7889999998542 44555554333322 22222222211111111112224566777888
Q ss_pred HHHHHHHHHHhCCCeeec-CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEe----CCCCCCCCCCCEEEEEee
Q 046900 342 RYQMIIEGLRSAGIECLK-GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNIS----PGSSCHCSEPGWFRVCFA 416 (442)
Q Consensus 342 ~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~----pg~~f~~~~~~~iRls~~ 416 (442)
+.+.|.+.|.+.|+++.. ...+..+++++..... ....++..+++.||.+. |+.. .+..++.|||+..
T Consensus 316 NAk~La~~L~~~G~~vv~ggTdnHlvlvdl~~~~~------~G~~ae~~Le~~gI~~Nkn~iP~D~-~~~~~sGiRiGT~ 388 (463)
T d2a7va1 316 NARAMADALLERGYSLVSGGTDNHLVLVDLRPKGL------DGARAERVLELVSITANKNTCPGDR-SAITPGGLRLGAP 388 (463)
T ss_dssp HHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTC------CHHHHHHHHHHTTEECEEECCTTCC-CSSSCSEEEEESH
T ss_pred HHHHHHHHHHhCCCeeecCCCCCceeeeeccccCC------CHHHHHHHHHhccCccCCccCCCCC-CCCCCCceEeCCH
Confidence 899999999999999875 3344567788855311 23445666688899886 4432 1123456999975
Q ss_pred -----cCCHHHHHHHHHHHHHHHH
Q 046900 417 -----NMSEQTLEVALKRIHNFMQ 435 (442)
Q Consensus 417 -----~~~~e~i~~~l~~l~~~l~ 435 (442)
.+.++++++..+.|.+++.
T Consensus 389 a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 389 ALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHH
Confidence 2467889988888888765
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2e-14 Score=138.20 Aligned_cols=276 Identities=15% Similarity=0.123 Sum_probs=171.9
Q ss_pred CCcEEEecChHHHHHHHHHhhc----------CCCCeEEEcCCCCcChHHhHhhh-------cC-----cEEEEEecCCC
Q 046900 120 LNRIVVTAGATAANELLTFILA----------DPGDALLVPTPYYPGFDRDLRWR-------TG-----IKIVPIHCDSS 177 (442)
Q Consensus 120 ~~~i~~t~G~~~ai~~~~~~l~----------~~gd~Vl~~~p~y~~~~~~~~~~-------~G-----~~v~~v~~~~~ 177 (442)
.+.+++++++++++..+++... .....++...-+|.......... .+ -.+..+|.
T Consensus 98 ~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~--- 174 (404)
T d2byla1 98 YHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY--- 174 (404)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT---
T ss_pred ccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc---
Confidence 5789999999999999987642 12246666666665432221100 11 12223332
Q ss_pred CCCcCCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccH
Q 046900 178 NNFQITPQALEAAYKEAESKDMRVRGVLITNP-SNPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSI 255 (442)
Q Consensus 178 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~ 255 (442)
.|++.+++.+.+ .++.+|+ ..| ....|. ..+.+-+++|.++|++||+++|.||+...|...+..+. .
T Consensus 175 ----~d~~~l~~~l~~-----~~iAavi-iEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a-~ 243 (404)
T d2byla1 175 ----NDLPALERALQD-----PNVAAFM-VEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLA-V 243 (404)
T ss_dssp ----TCHHHHHHHHTS-----TTEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSG-G
T ss_pred ----cCHHHHHHhcCC-----CCeEEEE-ECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccch-h
Confidence 267889988853 3555555 456 445564 55677799999999999999999999987655554321 1
Q ss_pred HHHHhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHc--cccCCCcHHHHHHHHHHhcCchhHHHHH
Q 046900 256 AEILEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRM--SSFTLISSQTQYLLASMLSNKKFTENYI 332 (442)
Q Consensus 256 ~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~ 332 (442)
..+.- .+| | -+++|.++ .| +.+|.+++ ++.+.+.+... .+.+..++++.+++.+.|+.. ++
T Consensus 244 ~~~gv-----~PD--i--~~~gK~l~-gG~~p~~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i---~~-- 307 (404)
T d2byla1 244 DYENV-----RPD--I--VLLGKALS-GGLYPVSAVLC-DDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVL---EE-- 307 (404)
T ss_dssp GGGTC-----CCS--E--EEECGGGG-TTSSCCEEEEE-CHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHH---HH--
T ss_pred hhcCC-----CCC--E--EEECchhh-CCCccceeeee-chhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHH---Hh--
Confidence 11111 122 2 37899998 66 89999998 66666554432 223455777777777776632 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeee--cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCE
Q 046900 333 KTNRERLQKRYQMIIEGLRSAGIECL--KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGW 410 (442)
Q Consensus 333 ~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~ 410 (442)
....+..++.-+++.+.|.++.-++. ....|++..+.+.+... ....++..+++++ ||++.|. ....
T Consensus 308 ~~l~~~~~~~g~~l~~~l~~l~~~~i~~vRg~Gl~~~i~~~~~~~----~~~~~~~~~l~~~-Gvl~~~~------~~~~ 376 (404)
T d2byla1 308 ENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKD----WDAWKVCLRLRDN-GLLAKPT------HGDI 376 (404)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSCTTTEEEEEEETTEEEEEECCCSS----CCHHHHHHHHHHT-TEECEEE------ETTE
T ss_pred cCchhhhhHhhHHHHHHHHhhccccceeeeecccEEEEEEecCCc----hhHHHHHHHHHhC-CeEEecC------CCCE
Confidence 12334445555666677766421111 12334455555544211 1256788888887 9998862 1357
Q ss_pred EEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 411 FRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 411 iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
+|++.. .++++++++++++|.+++.+
T Consensus 377 i~l~PpL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 377 IRFAPPLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence 999876 45899999999999999864
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.61 E-value=2.5e-14 Score=140.62 Aligned_cols=182 Identities=13% Similarity=0.024 Sum_probs=108.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCccCCCc-EEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHhhhcCcEEEE--E
Q 046900 96 GLKSFRQAMASFMEQIRGGRAKFDLNR-IVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGIKIVP--I 172 (442)
Q Consensus 96 g~~~lr~~ia~~l~~~~~~~~~~~~~~-i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~--v 172 (442)
-..++++.+|++++ .++ +++++|++.++.+++.+++++||.|+++.-+|......+....+..++. .
T Consensus 67 ~i~eae~~~A~~~g----------a~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~ 136 (462)
T d1c4ka2 67 PAVAAEKHAARVYN----------ADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQT 136 (462)
T ss_dssp HHHHHHHHHHHHTT----------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECE
T ss_pred HHHHHHHHHHHHhC----------CCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCceeeec
Confidence 35788888999876 344 5666777888888899999999999999999988776554324444443 3
Q ss_pred ecCCCCC-C-----cCCHHHHHHHHHHH---HhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCC
Q 046900 173 HCDSSNN-F-----QITPQALEAAYKEA---ESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYS 243 (442)
Q Consensus 173 ~~~~~~~-~-----~~d~~~l~~~l~~~---~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~ 243 (442)
+.++.+. . .++.+.+++.+.+. .....+++.+++...+|-+|.+.+ +++|+++|+++|++|++|++|+
T Consensus 137 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~~l~vD~A~~ 213 (462)
T d1c4ka2 137 NRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCDYIEFDSAWV 213 (462)
T ss_dssp EECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGGBSEEEEECTTC
T ss_pred ccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHcCCEEEEechhh
Confidence 4443321 1 12333333222100 011234444555545566899988 7888999999999999999997
Q ss_pred cCCCCCCC-cccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEee
Q 046900 244 GSAFSSSE-FVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYS 292 (442)
Q Consensus 244 ~~~~~~~~-~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~ 292 (442)
........ ..+......+. ....+..+++.|++|.+|.++- .+++..
T Consensus 214 ~~~~~~~~~~~~~~~~g~~~-~~~~~~D~~~~S~HK~lg~~~~-g~ll~~ 261 (462)
T d1c4ka2 214 GYEQFIPMMRNSSPLLIDDL-GPEDPGIIVVQSVHKQQAGFSQ-TSQIHK 261 (462)
T ss_dssp CGGGSSGGGGGGCTTSCCCC-CTTSCEEEEEECHHHHSSCCTT-CEEEEE
T ss_pred ccccccCcCCcchhhccccc-cccCCccEEEEecCcccccccc-eEEEEe
Confidence 53221111 01110000000 0011335788999999974432 344443
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.60 E-value=5.7e-14 Score=135.17 Aligned_cols=346 Identities=13% Similarity=0.104 Sum_probs=188.2
Q ss_pred CCCCCCCCceeeeeccc--ccc--cHHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCC
Q 046900 41 YEESTNPSGVIQMGLAE--NQV--SFDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRA 116 (442)
Q Consensus 41 ~~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 116 (442)
|.-+.....+|||..+. ..+ .++.+.+.+.+..... .|....-.....+.+++.+....
T Consensus 32 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~---- 94 (404)
T d1z7da1 32 FVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNL-------------TICSRAFFSVPLGICERYLTNLL---- 94 (404)
T ss_dssp EEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTC-------------SCCCTTSEEHHHHHHHHHHHHHH----
T ss_pred EEEECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhC-------------CCcccccchHHHHHHHHhhhhcc----
Confidence 33344567889987652 333 3455665555433210 11111111223344455555432
Q ss_pred ccCCCcEEEecChHHHHHHHHHhhc----------CCCCeEEEcCCCCcChHHhHhhhcCcEEE---EEecCCCCCCcC-
Q 046900 117 KFDLNRIVVTAGATAANELLTFILA----------DPGDALLVPTPYYPGFDRDLRWRTGIKIV---PIHCDSSNNFQI- 182 (442)
Q Consensus 117 ~~~~~~i~~t~G~~~ai~~~~~~l~----------~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~---~v~~~~~~~~~~- 182 (442)
..+.+.++++++++...+++... .....++...-+|...........+.... ..|... .-+..
T Consensus 95 --~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 171 (404)
T d1z7da1 95 --GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAP-QFSKVP 171 (404)
T ss_dssp --TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------CEEEEC
T ss_pred --ccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCc-cccccc
Confidence 25779999999999998876542 11235666666666543322211111100 111100 00111
Q ss_pred --CHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHH
Q 046900 183 --TPQALEAAYKEAESKDMRVRGVLITNP-SNPLGATI-QRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEI 258 (442)
Q Consensus 183 --d~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~~~-~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~ 258 (442)
+.+.++..+. +.++.+|++ -| ....|.+. +++-+++|.++|++||+++|.||++..+...+..+. ...+
T Consensus 172 ~~~~~~l~~~~~-----~~~iAavi~-EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~-~e~~ 244 (404)
T d1z7da1 172 YDDLEALEEELK-----DPNVCAFIV-EPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLC-VHHY 244 (404)
T ss_dssp TTCHHHHHHHHT-----STTEEEEEE-CSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSG-GGGG
T ss_pred cchHHHHHHHhc-----CCCEEEEEE-EEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCccccccc-cccc
Confidence 3455555543 235555444 56 55667654 556699999999999999999999987654444321 1111
Q ss_pred HhhhcCCCCCcEEEEecCcccCCCCC-ceeEEEeecCHHHHHHHHHc--cccCCCcHHHHHHHHHHhcCchhHHHHHHHH
Q 046900 259 LEARQYKDSERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRM--SSFTLISSQTQYLLASMLSNKKFTENYIKTN 335 (442)
Q Consensus 259 ~~~~~~~~~~~vi~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 335 (442)
.- .+.+ -+++|.++ .| +.+|.+++ ++.+.+.++.. .+.+..++++..++.+.|+...- +...+..
T Consensus 245 gv------~PDi---vt~gK~l~-gG~~p~~~v~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~-~~~~~~~ 312 (404)
T d1z7da1 245 NV------KPDV---ILLGKALS-GGHYPISAVLA-NDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN-EKLCENA 312 (404)
T ss_dssp TC------CCSE---EEECGGGG-TTSSCCEEEEE-CHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHH
T ss_pred CC------CCCE---EEEccccc-CCCCCcccccc-hHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhc-chhhhhh
Confidence 11 1222 37899998 55 78999998 66666555432 22245577877777777653110 1122223
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEe
Q 046900 336 RERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCF 415 (442)
Q Consensus 336 ~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~ 415 (442)
.+.-...++.+.+.+++.++......-|+++.+.+..... ...++..+++++ ||.+.|. ....+|++.
T Consensus 313 ~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~-----~~~~~~~~l~~~-Gl~~~~~------~~~~ir~~P 380 (404)
T d1z7da1 313 EKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELV-----NVLDICLKLKEN-GLITRDV------HDKTIRLTP 380 (404)
T ss_dssp HHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTC-----CHHHHHHHHHHT-TEECCEE------TTTEEEECC
T ss_pred ccchhHHHHHHHHHHhcCCCeEEEEeeCcEEEEEEcCCcc-----cHHHHHHHHHhC-CeEEecC------CCCEEEEEC
Confidence 2333333444555555554432222344566677654211 256678888777 9998763 235689986
Q ss_pred e-cCCHHHHHHHHHHHHHHHHHH
Q 046900 416 A-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 416 ~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+ .++++++++++++|.++++++
T Consensus 381 pl~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 381 PLCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHHHHhh
Confidence 5 458999999999999999875
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.58 E-value=4.9e-14 Score=134.61 Aligned_cols=332 Identities=15% Similarity=0.105 Sum_probs=197.4
Q ss_pred CCCCCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCC
Q 046900 41 YEESTNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRA 116 (442)
Q Consensus 41 ~~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 116 (442)
|.-+.+.+.+||+..+ .+.++ ++.+.+.+.++... .. +....-..+.+..+++.+.....
T Consensus 30 ~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~------------~~-~~~~~~~~~~~~~la~~l~~~~~--- 93 (387)
T d1vefa1 30 RVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAET------------LM-AMPQTLPTPMRGEFYRTLTAILP--- 93 (387)
T ss_dssp EEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHH------------CC-CCCTTSCCHHHHHHHHHHHHTSC---
T ss_pred EEEECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHh------------hc-ccccccCCchHHHHHHHhhhhcc---
Confidence 3334556788998653 33343 35555555543211 01 11111123566677776665321
Q ss_pred ccCCCcEEEecChHHHHHHHHHhhc--CCCCeEEEcCCCCcChHHhHhhhcC------------cEEEEEecCCCCCCcC
Q 046900 117 KFDLNRIVVTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTG------------IKIVPIHCDSSNNFQI 182 (442)
Q Consensus 117 ~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~G------------~~v~~v~~~~~~~~~~ 182 (442)
..-+.+.+++++++++..+++... .....|+...-+|.+....+....| ..+..+|. -
T Consensus 94 -~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-------~ 165 (387)
T d1vefa1 94 -PELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------N 165 (387)
T ss_dssp -TTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------T
T ss_pred -ccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------C
Confidence 223579999999999999887641 2346788888888664332221122 12333432 2
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCcC-CCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHh
Q 046900 183 TPQALEAAYKEAESKDMRVRGVLITNP-SNPLGAT-IQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILE 260 (442)
Q Consensus 183 d~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~~-~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~ 260 (442)
|.+.|++.+.+ ++.+|++ .| ....|.. .+.+-+++|.++|++||+++|.||+...|...|..+ ....+.-
T Consensus 166 d~~~l~~~~~~------~iAavi~-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~-~~~~~~v 237 (387)
T d1vefa1 166 DVEALKRAVDE------ETAAVIL-EPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF-AFEHFGI 237 (387)
T ss_dssp CHHHHHHHCCT------TEEEEEE-CSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-THHHHTC
T ss_pred CHHHHHHhcCC------CeEEEEE-ECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCc-ccccCCc
Confidence 67888887753 6655554 56 4445654 567779999999999999999999999875455432 2222211
Q ss_pred hhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHH--ccccCCCcHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 046900 261 ARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR--MSSFTLISSQTQYLLASMLSNKKFTENYIKTNRER 338 (442)
Q Consensus 261 ~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 338 (442)
.+. +-+++|.++ .|+.++.++. .+.+...+.. ....+..++++..++.+.|+.. ++ ....++
T Consensus 238 ------~PD---i~~~gK~l~-gG~~~~~~~~-~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l---~~--~~~~~~ 301 (387)
T d1vefa1 238 ------VPD---ILTLAKALG-GGVPLGVAVM-REEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYL---ER--TRLWER 301 (387)
T ss_dssp ------CCS---EEEECGGGG-TTSSCEEEEE-EHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHH---HH--HTTHHH
T ss_pred ------CCc---eeeecccCC-CCcccccccc-ceeeeeccccCCccccCCCCcchhhhcccchhhc---cc--ccccch
Confidence 122 235789998 8888898888 4555444322 2223455777777777766532 11 223445
Q ss_pred HHHHHHHHHHHHHhCCCeee--cCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee
Q 046900 339 LQKRYQMIIEGLRSAGIECL--KGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA 416 (442)
Q Consensus 339 ~~~~~~~l~~~L~~~g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~ 416 (442)
.++.-+++.+.|+++.-+.. ...-|++..+++.+. ....+...++++ |+.+.+. .+..+|++.+
T Consensus 302 v~~~g~~l~~~L~~l~~~~v~~vrg~Gl~~~ie~~~~-------~~~~~~~~~~~~-g~l~~~~------g~~~ir~~Pp 367 (387)
T d1vefa1 302 AAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEK-------AAPYIARLEKEH-RVLALQA------GPTVIRFLPP 367 (387)
T ss_dssp HHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESSC-------SHHHHHHHHHHH-CEECEES------STTEEEECCC
T ss_pred HhhhhHHHHHHHHhcCCCceEEEeecceEEEEEEeCC-------chHHHHHHHHHC-CCeEEec------CCCEEEEECC
Confidence 55556667777766421111 112345666776542 134455555566 8877652 2357898865
Q ss_pred -cCCHHHHHHHHHHHHHHH
Q 046900 417 -NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 417 -~~~~e~i~~~l~~l~~~l 434 (442)
.+++++++++++++++++
T Consensus 368 l~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 368 LVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHh
Confidence 459999999999999886
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=2.3e-13 Score=131.57 Aligned_cols=285 Identities=13% Similarity=0.056 Sum_probs=170.2
Q ss_pred CCCcEEEecChHHHHHHHHHhhc-------CCCCeEEEcCCCCcChHHhHhhhcC-------------cEEEEEecCCC-
Q 046900 119 DLNRIVVTAGATAANELLTFILA-------DPGDALLVPTPYYPGFDRDLRWRTG-------------IKIVPIHCDSS- 177 (442)
Q Consensus 119 ~~~~i~~t~G~~~ai~~~~~~l~-------~~gd~Vl~~~p~y~~~~~~~~~~~G-------------~~v~~v~~~~~- 177 (442)
.-+.+++++++++|++.+++... ....+|+...-+|.+....+....| ......|....
T Consensus 102 ~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
T d1s0aa_ 102 PLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSR 181 (429)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSB
T ss_pred CcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccc
Confidence 45679999999999998876542 2335788887777654322110111 11222221111
Q ss_pred CCCcC---CHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 178 NNFQI---TPQALEAAYKEAESKDMRVRGVLITNP-SNPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 178 ~~~~~---d~~~l~~~l~~~~~~~~~~~~v~l~~P-~NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
..... +.+.+++.+.+ .+.++.++++... ++-.|. ..|++-+++|.++|++||+++|.||++..+...+..+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~---~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~ 258 (429)
T d1s0aa_ 182 MDGEWDERDMVGFARLMAA---HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF 258 (429)
T ss_dssp C-CCCCGGGGHHHHHHHHH---HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred cccccchhhhhhhhhhhhh---cCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccccc
Confidence 11112 34555555443 3446665555532 355555 4688889999999999999999999999875555422
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc-------cccCCCcHHHHHHHHHHhcCc
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM-------SSFTLISSQTQYLLASMLSNK 325 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~-------~~~~~~s~~~q~~~~~~l~~~ 325 (442)
...... ..+. +-+++|.++-.+..+|.+++ .+++.+.+... ...+..++++.+++.+.|+..
T Consensus 259 -~~~~~~------v~PD---i~~~gK~l~gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i 327 (429)
T d1s0aa_ 259 -ACEHAE------IAPD---ILCLGKALTGGTMTLSATLT-TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIL 327 (429)
T ss_dssp -GGGGGT------CCCS---EEEECGGGGTSSSCCEEEEE-CHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHH
T ss_pred -ccccce------eccc---ccccccccccccccccchhh-HHHHHhccCCCCCcceeecCCCCCCcccchhhhcccccc
Confidence 111111 1122 23578999734489999998 67777766431 223445677777776666522
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC---CCeeecCCceEEEEEecCCcccccChhhHHHHHHHHHHcCcEEEeCCCC
Q 046900 326 KFTENYIKTNRERLQKRYQMIIEGLRSA---GIECLKGNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLNISPGSS 402 (442)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~ 402 (442)
+ + ....+..++.-+++.+.|+++ ..--.....|+++.+++.... ....+...++++ |+.+.|+
T Consensus 328 ~---~--~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~~e~~~~~------~~~~~~~~~~~~-Gl~~~~~-- 393 (429)
T d1s0aa_ 328 E---S--GDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPV------NMAALQKFFVEQ-GVWIRPF-- 393 (429)
T ss_dssp H---T--CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCB------CHHHHHHHHHHT-TEECCCB--
T ss_pred c---c--ccccchhhHHHHHHHHHHHHhccCCceEEEeecccEEEEEecCcc------cHHHHHHHHHHC-CcEEEec--
Confidence 1 1 122333444445555555443 211111234456667765432 256788888777 9998763
Q ss_pred CCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 403 CHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 403 f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
.+.+|++.. .++++++++++++|.+++++
T Consensus 394 -----g~~i~~~Ppl~it~~eid~~~~~l~~al~e 423 (429)
T d1s0aa_ 394 -----GKLIYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp -----TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred -----CCEEEEeCCcCCCHHHHHHHHHHHHHHHHh
Confidence 247999865 45899999999999998765
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.53 E-value=1.3e-12 Score=126.73 Aligned_cols=360 Identities=12% Similarity=0.100 Sum_probs=192.0
Q ss_pred CCCCCCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCC
Q 046900 40 PYEESTNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGR 115 (442)
Q Consensus 40 ~~~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 115 (442)
.|.-+.....+||+..+ ...++ ++.+.+.+.+..+.. .|.......+.+..+|+.+.+...
T Consensus 33 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~-------------~~~~~~~~~~~~~~la~~L~~~~~-- 97 (431)
T d1zoda1 33 SFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKL-------------DHLFSEMLSRPVVDLATRLANITP-- 97 (431)
T ss_dssp TEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHC-------------CCCCTTCCCHHHHHHHHHHHHHSC--
T ss_pred CEEEECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhc-------------cccccccccHHHHHHHHHHHHhCC--
Confidence 34444556788998654 34443 355555554432110 011111112334456666665432
Q ss_pred CccCCCcEEEecChHHHHHHHHHhh--cCCCCeEEEcCCCCcChHHhHhhhcC-----------cEEEEEecCCCC----
Q 046900 116 AKFDLNRIVVTAGATAANELLTFIL--ADPGDALLVPTPYYPGFDRDLRWRTG-----------IKIVPIHCDSSN---- 178 (442)
Q Consensus 116 ~~~~~~~i~~t~G~~~ai~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~~G-----------~~v~~v~~~~~~---- 178 (442)
-..+.+++++++++|++.+++.. ....+.|+...-+|.+....+....+ .....++.....
T Consensus 98 --~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (431)
T d1zoda1 98 --PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRF 175 (431)
T ss_dssp --TTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCC
T ss_pred --cccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeeccccccc
Confidence 13478999999999999988764 22346788777777765433321111 112222211100
Q ss_pred ---CCcCCHHHHHHHHHHHHhc-CCceeEEEEeCC-CCCCCc-CCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCc
Q 046900 179 ---NFQITPQALEAAYKEAESK-DMRVRGVLITNP-SNPLGA-TIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEF 252 (442)
Q Consensus 179 ---~~~~d~~~l~~~l~~~~~~-~~~~~~v~l~~P-~NPtG~-~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~ 252 (442)
....+.+.++......... ..++.+ ++.-| ..-.|. ..|.+-+++|.++|++||+++|.||+...+...+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~iAa-vi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~ 254 (431)
T d1zoda1 176 ERNGAYDYLAELDYAFDLIDRQSSGNLAA-FIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF 254 (431)
T ss_dssp EETTEECHHHHHHHHHHHHHHHCCSCEEE-EEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred ccccchhhhhhHHHHHHHHHHhccccccc-eeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccccc
Confidence 0011233344333222222 234444 45556 333455 4577779999999999999999999999865555433
Q ss_pred ccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHHHHHc----cccCCCcHHHHHHHHHHhcC---c
Q 046900 253 VSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM----SSFTLISSQTQYLLASMLSN---K 325 (442)
Q Consensus 253 ~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~----~~~~~~s~~~q~~~~~~l~~---~ 325 (442)
. ...+.- .+. +-+++|.++ .|+.++.+++ .+.+....... ...+..++++..++.+.++- .
T Consensus 255 ~-~~~~gv------~PD---i~~~gK~l~-gG~p~~av~~-~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~ 322 (431)
T d1zoda1 255 A-CQRDGV------TPD---ILTLSKTLG-AGLPLAAIVT-SAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRD 322 (431)
T ss_dssp T-HHHHTC------CCS---EEEECHHHH-TTSSCEEEEE-CHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred c-cccCCC------Ccc---hhccccccc-cccccceeee-eecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhh
Confidence 2 222211 122 235789998 8888999888 45554443321 22245567666666655542 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcc--cccChhhHHHHHHHHHHcCcEEEeCCCCC
Q 046900 326 KFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLL--EEQTREGELALWDSMLHEVKLNISPGSSC 403 (442)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~gi~v~pg~~f 403 (442)
+. .++..+..+.+ ++.+.+.+.+.++......-|+++-+++.... ..........+...++++ |+.+..- .
T Consensus 323 ~~-~~~~~~~g~~l---~~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~-Gl~~~~~--~ 395 (431)
T d1zoda1 323 GL-VARANVMGDRL---RRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNL-GLSMNIV--Q 395 (431)
T ss_dssp TH-HHHHHHHHHHH---HHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHT-TEECCEE--C
T ss_pred hh-hHHHHHHHHHH---hhhhhhhhhcCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHHh-CcccCee--e
Confidence 21 12222222222 33333444444443322233445545542110 001111256678888777 9863210 0
Q ss_pred CCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 404 HCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 404 ~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
.....+.+|++.+ .++++++++++++|.+++++
T Consensus 396 ~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~ 429 (431)
T d1zoda1 396 LPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429 (431)
T ss_dssp CTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1123467999876 45899999999999999886
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.52 E-value=1.5e-12 Score=123.85 Aligned_cols=288 Identities=12% Similarity=0.119 Sum_probs=180.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc-CCC--CeEEEcCCCCcChHHhHhhhcCcEEEEEe
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA-DPG--DALLVPTPYYPGFDRDLRWRTGIKIVPIH 173 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~-~~g--d~Vl~~~p~y~~~~~~~~~~~G~~v~~v~ 173 (442)
...+++.+++|++ ...++.++++|.|+.+++.++- .+| |.|+++.-+|+....++.. .|++++.++
T Consensus 33 v~~fE~~~~~~~g----------~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai~~-~G~~pv~vD 101 (371)
T d2fnua1 33 SLLFEEALCEFLG----------VKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLE-SGYTPVFAG 101 (371)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHH-TTCEEEECC
T ss_pred HHHHHHHHHHHHC----------cCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccceeeec-cCccccccc
Confidence 5788888888875 4568899999999999999983 344 4899999999998888884 999999999
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
++.+. + ++.+.+++.+.. ++++|+++ +.-|...+ +.++.++|++++++||+|.+++....-...
T Consensus 102 i~~~~-~-~~~~~~~~~~~~------~t~avi~v---h~~G~~~~---~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~-- 165 (371)
T d2fnua1 102 IKNDG-N-IDELALEKLINE------RTKAIVSV---DYAGKSVE---VESVQKLCKKHSLSFLSDSSHALGSEYQNK-- 165 (371)
T ss_dssp BCTTS-S-BCGGGSGGGCCT------TEEEEEEE---CGGGCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEETTE--
T ss_pred ccccc-c-ccchhhhhhccc------hhhccccc---cccccccc---cccccccccccchhhccchhhccCceeccc--
Confidence 88654 3 455667666543 88998877 45677666 667788888999999999999853211111
Q ss_pred cHHHHHhhhcCCCCCcEEEEecC--cccCCCCCceeEEEeecCHHHHHHHHHccccC------------------CCcHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSL--SKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT------------------LISSQ 313 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~--SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~------------------~~s~~ 313 (442)
.... .+ .+.+.|| +|.++ +| ..|.++++++.+.+.++.....+ .++.+
T Consensus 166 ~~G~---------~g-~~~~~Sf~~~K~l~-~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel 233 (371)
T d2fnua1 166 KVGG---------FA-LASVFSFHAIKPIT-TA-EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEI 233 (371)
T ss_dssp ETTS---------SS-SEEEEECCTTSSSC-CS-SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHH
T ss_pred cCCc---------cc-cccccccccccccc-cc-cceEEEeechhhhhhcccccccccccccccccccccccccccccch
Confidence 1000 11 1334455 89886 33 37999998888887776543221 12333
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC----Cce-EEEEEecCCcccccChhhHHHHHH
Q 046900 314 TQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKG----NAG-LFCWMNLSPLLEEQTREGELALWD 387 (442)
Q Consensus 314 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~g-~~~~~~~~~~~~~~~~~~~~~l~~ 387 (442)
..+.+..-|+. +++++ +.-++..+++.+.|.+. ++....+ ... ....+.+.... .....++.+
T Consensus 234 ~Aaigl~qL~~---l~~~~----~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~r~~~~~ 302 (371)
T d2fnua1 234 QSALGLSQLKK---APFLM----QKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF----FTCKKLILE 302 (371)
T ss_dssp HHHHHHHHHTT---HHHHH----HHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG----GGGHHHHHH
T ss_pred hhhhhhhhhhh---ccchh----hhhhhhhhhhcccccccccccccccccccccccccccccccccc----hhHHHHHHH
Confidence 33333343432 22222 22233445556667665 3333221 111 11222232211 112456777
Q ss_pred HHHHcCcEEEeCCCCCCC------------CCC---------CEEEEEe-ecCCHHHHHHHHHHHHHHHHHH
Q 046900 388 SMLHEVKLNISPGSSCHC------------SEP---------GWFRVCF-ANMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 388 ~l~~~~gi~v~pg~~f~~------------~~~---------~~iRls~-~~~~~e~i~~~l~~l~~~l~~~ 437 (442)
.|.++ ||.+.+. |.+ ..+ ..+.|-+ ..+++++++..++.|.+++++.
T Consensus 303 ~L~~~-gI~~~~~--y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~~ 371 (371)
T d2fnua1 303 SLHKR-GILAQVH--YKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 371 (371)
T ss_dssp HHHHT-TEECBCC--CCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHC-CCCccee--CcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 77665 9998764 221 111 2354533 2568999999999999998763
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.47 E-value=6.7e-12 Score=119.43 Aligned_cols=171 Identities=19% Similarity=0.253 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh-cCCCCeEEEcCCCCcChHHhHhhhcCcEEEEEecC
Q 046900 97 LKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLRWRTGIKIVPIHCD 175 (442)
Q Consensus 97 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~~G~~v~~v~~~ 175 (442)
...+++.++++++ ....+.++++|.|+.+++.++ +++||.|++|.-+|+....++.. .|++++.++++
T Consensus 23 ~~~fE~~~~~~~~----------~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~~-~g~~pv~~Di~ 91 (374)
T d1o69a_ 23 VNRFEQSVKDYSK----------SENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICY-LKAKPVFIDCD 91 (374)
T ss_dssp HHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHH-TTCEEEEECBC
T ss_pred HHHHHHHHHHHHC----------cCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHHHhh-ccceeEecccc
Confidence 5788888888875 456899999999999999998 78999999999999998888884 99999999988
Q ss_pred CCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCC-CCCCccc
Q 046900 176 SSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAF-SSSEFVS 254 (442)
Q Consensus 176 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~-~~~~~~s 254 (442)
+. .+..+.+..+.. .. ...+++++++++. .|.... +.++.++|+++++.||+|.+++.... .+. .
T Consensus 92 ~~-~~~~~~~~~~~~-~~---~~~~~~aii~~~~---~G~~~d---~~~i~~~~~~~~i~vIED~a~a~g~~~~~~---~ 157 (374)
T d1o69a_ 92 ET-YNIDVDLLKLAI-KE---CEKKPKALILTHL---YGNAAK---MDEIVEICKENDIVLIEDAAEALGSFYKNK---A 157 (374)
T ss_dssp TT-SSBCHHHHHHHH-HH---CSSCCCEEEEECG---GGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE---E
T ss_pred cc-cccccccccccc-hh---ccccccccccccc---ccchhh---hHHHHHHhhccCcchhhhhhhhhcceECCe---e
Confidence 53 233333333322 21 2347888887754 455555 77888899999999999999984221 111 1
Q ss_pred HHHHHhhhcCCCCCcEEEEecC--cccCCCCCceeEEEeecCHHHHHHHHHc
Q 046900 255 IAEILEARQYKDSERVHIVYSL--SKDLGLPGFRVGTIYSYNDKVVTTARRM 304 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~vi~~~S~--SK~~g~~G~RiG~i~~~~~~~~~~~~~~ 304 (442)
+.. .+ .+.+.|| +|.++..| .|.+++.++.+.+.++.+
T Consensus 158 ~G~---------~g-d~~~fSf~~~K~l~tge--GG~i~tnn~~~~~~~~~~ 197 (374)
T d1o69a_ 158 LGT---------FG-EFGVYSYNGNKIITTSG--GGMLIGKNKEKIEKARFY 197 (374)
T ss_dssp TTS---------SS-SEEEEECCTTSSSCCSS--CEEEEESCHHHHHHHHHH
T ss_pred cCC---------CC-ceEEEeccCcccccccc--ceeehhhhHHHHHhhccc
Confidence 100 11 2445666 68886333 588888888887776543
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.40 E-value=4.7e-12 Score=123.49 Aligned_cols=353 Identities=12% Similarity=0.116 Sum_probs=188.5
Q ss_pred CCCCCCCCceeeeecc--ccccc--HHHHHHHHHhCCCCcccCCCCCCCCcccccCCCcchHHHHHHHHHHHHHHhCCCC
Q 046900 41 YEESTNPSGVIQMGLA--ENQVS--FDLLEEYLEQQPEASTWGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGRA 116 (442)
Q Consensus 41 ~~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 116 (442)
|.-+.....+|||..+ .+.++ ++.+.+.+.+....... .....+.. .....+.+.+++.+.....
T Consensus 46 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-------~~~~~~~~-~~~~~~a~~lae~l~~~~~--- 114 (461)
T d1ohwa_ 46 YLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTF-------INRPALGI-LPPENFVEKLRESLLSVAP--- 114 (461)
T ss_dssp EEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHH-------HCCCCTTT-SCBTTHHHHHHHTGGGGCC---
T ss_pred EEEECCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhh-------cccccccc-cchHHHHHHHHHHHHhhhc---
Confidence 3344556678898654 23343 35556666544321000 00001111 1123455667776653221
Q ss_pred ccCCCcEEEecChHHHHHHHHHhhc----------------------------CCCCeEEEcCCCCcChHHhHhhhcCc-
Q 046900 117 KFDLNRIVVTAGATAANELLTFILA----------------------------DPGDALLVPTPYYPGFDRDLRWRTGI- 167 (442)
Q Consensus 117 ~~~~~~i~~t~G~~~ai~~~~~~l~----------------------------~~gd~Vl~~~p~y~~~~~~~~~~~G~- 167 (442)
-.-+.+++++++++|++.+++... .+...|+...-+|.+....+....|-
T Consensus 115 -~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~ 193 (461)
T d1ohwa_ 115 -KGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSK 193 (461)
T ss_dssp -TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSC
T ss_pred -cCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCc
Confidence 234689999999999999876541 22346888888887643322211221
Q ss_pred ------------EEEEEecCCCCCC-----------cCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCc-CCCHHHHH
Q 046900 168 ------------KIVPIHCDSSNNF-----------QITPQALEAAYKEAESKDMRVRGVLITNPSNPLGA-TIQRSVLE 223 (442)
Q Consensus 168 ------------~v~~v~~~~~~~~-----------~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~-~~~~~~l~ 223 (442)
...+.+... ..+ ..+.+.+++.+........++.+|++..-+...|. ..+.+-++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~ 272 (461)
T d1ohwa_ 194 AIHKIDIPSFDWPIAPFPRLK-YPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFR 272 (461)
T ss_dssp HHHHTTCCCCCCCEECCCCCC-SSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHH
T ss_pred ccccccccccCCccccccccc-ccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHH
Confidence 111111000 000 01245666666655444556655555543555564 46777799
Q ss_pred HHHHHHHhcCcEEEEeccCCcCCCCCCCcccHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHHHH-HH
Q 046900 224 ELLDFATRKNIHLVSDEIYSGSAFSSSEFVSIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTT-AR 302 (442)
Q Consensus 224 ~l~~~~~~~~~~vi~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~~~-~~ 302 (442)
+|.++|++||+++|.||++..+...|..+ ....+.- ..... + -+++|.++ . |+... ...+... ..
T Consensus 273 ~lr~lc~~~gillI~DEV~tG~gRtG~~~-~~e~~gi----~~~PD-i--v~~gK~l~-~----g~~~~-~~~~~~~~~~ 338 (461)
T d1ohwa_ 273 KLRDISRKHGCAFLVDEVQTGGGSTGKFW-AHEHWGL----DDPAD-V--MTFSKKMM-T----GGFFH-KEEFRPNAPY 338 (461)
T ss_dssp HHHHHHHHTTCEEEEECTTTCSSTTSSSS-GGGGGCC----SSCCS-E--EEECGGGS-S----EEEEE-CGGGSCSSTT
T ss_pred HHHHHHHhhCcceeccccccccccccccc-ccccccc----ccCch-h--hhhhhccc-c----ccccc-cccccccccc
Confidence 99999999999999999999876555422 2111110 00111 2 26889885 3 34433 2222111 01
Q ss_pred HccccCCCcHHHHHHHHHHhcC---chhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEEEEEecCCcccccCh
Q 046900 303 RMSSFTLISSQTQYLLASMLSN---KKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLFCWMNLSPLLEEQTR 379 (442)
Q Consensus 303 ~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 379 (442)
.....+..++++.+++.+.|+- .+. .++.++..+.++++.+.+.+.... .+.-.. .-|+++-+++++..
T Consensus 339 ~~~~T~~g~p~~~aaa~a~l~~i~~~~l-~~~~~~~g~~l~~~l~~l~~~~~~-~i~~vr-G~Gl~~~ie~~~~~----- 410 (461)
T d1ohwa_ 339 RIFNTWLGDPSKNLLLAEVINIIKREDL-LSNAAHAGKVLLTGLLDLQARYPQ-FISRVR-GRGTFCSFDTPDES----- 410 (461)
T ss_dssp SSCCSCSSCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHCTT-TCEEEE-EETTEEEEECSSHH-----
T ss_pred ccccccccccccchhhcccchhhhhhhH-HHHHHHHHHHHHHHHHHHHhhCCC-ceEEee-eeeEEEEEEcCCHH-----
Confidence 1222345567766666666552 221 222333333333332222222111 122122 33557778876531
Q ss_pred hhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 380 EGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 380 ~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
...+++..++++ ||++.+. ++..||+... .++++++++++++|.+++.+
T Consensus 411 -~~~~i~~~~~~~-Gll~~~~------~~~~ir~~PpL~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 411 -IRNKLISIARNK-GVMLGGC------GDKSIRFRPTLVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp -HHHHHHHHHHHT-TEECEEE------TTTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHC-CeEEeeC------CCCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence 356788888877 9999873 2357998865 45899999999999999875
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.22 E-value=5e-11 Score=112.62 Aligned_cols=290 Identities=13% Similarity=0.117 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHhCCCCccCC-CcEEEecChHH-HHHHHHHhhcCCCCeEEEcCCCCcC--hHHhHhhhcCcEEEEEe
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDL-NRIVVTAGATA-ANELLTFILADPGDALLVPTPYYPG--FDRDLRWRTGIKIVPIH 173 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~-~~i~~t~G~~~-ai~~~~~~l~~~gd~Vl~~~p~y~~--~~~~~~~~~G~~v~~v~ 173 (442)
.++.+.+.+.+.+.++ ++. ..|++++|++. ++.++...+..+|+.+++..-.... +...++ ..|..+..+.
T Consensus 47 ~~~~~~~r~~l~~l~~----~~~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~-~~g~~~~~~~ 121 (361)
T d2c0ra1 47 EAVHNEAQARLLALLG----NPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAK-LIGDTHVAAS 121 (361)
T ss_dssp HHHHHHHHHHHHHHTT----CCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH-HHSCEEEEEE
T ss_pred HHHHHHHHHHHHHHhC----CCCCCEEEEECCCchHHHHHHHhccccCCCceEEEeechhhhhhhhhhh-hcCceeeeec
Confidence 4444555555555544 333 36888887654 4466666788888888766533221 234445 4898888887
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
.+... .++++.+++.+.. .+...+ +|.||...+ +.++.++|+++|+++++|.+.+. ++. ..
T Consensus 122 ~~~~~--~~~~~~~~~~~~~-------~~~~~v---~~~tg~~~~---~~~i~~~~~~~~al~~vDavss~---g~~-~i 182 (361)
T d2c0ra1 122 SEASN--YMTLPKLQEIQLQ-------DNAAYL---HLTSNETIE---GAQFKAFPDTGSVPLIGDMSSDI---LSR-PF 182 (361)
T ss_dssp CGGGT--TCSCCCGGGCCCC-------TTEEEE---EEESEETTT---TEECSSCCCCTTSCEEEECTTTT---TSS-CC
T ss_pred ccccc--ccchhhhhhhccc-------CcceEE---EEeccccee---cceEEEeeccCCceEEEEeeccc---ccc-cc
Confidence 66543 3455666654432 222333 466888877 45667889999999999999874 222 22
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHH-------------HHHHHccccCCCcHHHHHHHHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVV-------------TTARRMSSFTLISSQTQYLLAS 320 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~-------------~~~~~~~~~~~~s~~~q~~~~~ 320 (442)
.+.++ + +.+.|.+|.++.+|.-.+++.. ..+. .............+.....+..
T Consensus 183 d~~~~---------d--i~~~s~~k~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (361)
T d2c0ra1 183 DLNQF---------G--LVYAGAQKNLGPSGVTVVIVRE--DLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNE 249 (361)
T ss_dssp CGGGC---------S--EEEEETTTTTCCSSCEEEEEEG--GGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHH
T ss_pred ccccc---------e--eEEEecccccccccCcEEEEEh--HHhhhCccccccccccccccccccccccccceeeehhhh
Confidence 22211 2 4456789999877743333321 1111 1111111111112211111111
Q ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCee-ec---CCceEEEEEecCCcccccChhhHHHHHHHHHHcCcE
Q 046900 321 MLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIEC-LK---GNAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKL 395 (442)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~---~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi 395 (442)
.... ............+.++++..+....... .... .. ..+...+.+.+++.. ++.++...| +++||
T Consensus 250 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~------~~~~~~~~L-~~~GI 321 (361)
T d2c0ra1 250 VLKW-IEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEE------LEKEFVKAS-EQEGF 321 (361)
T ss_dssp HHHH-HHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHH------HHHHHHHHH-HHTTE
T ss_pred HHHh-hhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCcc------cHHHHHHHH-HHCCC
Confidence 1110 0001112223334444445555555443 1111 11 112234555666532 256677666 45599
Q ss_pred EEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 396 NISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 396 ~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
.+..|... -+.|||++. ..+.|+++++++.|+++.++
T Consensus 322 ~~~~G~~~----~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 322 VGLKGHRS----VGGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp ESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCc----CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 99988432 123999986 34899999999999987654
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=4e-10 Score=105.81 Aligned_cols=289 Identities=7% Similarity=-0.026 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHhCCCCccCC-CcEEEecChHHHHHHH-HHhhcCCCCeEEEcCCCCcC--hHHhHhhhcCcEEEEEe
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDL-NRIVVTAGATAANELL-TFILADPGDALLVPTPYYPG--FDRDLRWRTGIKIVPIH 173 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~-~~i~~t~G~~~ai~~~-~~~l~~~gd~Vl~~~p~y~~--~~~~~~~~~G~~v~~v~ 173 (442)
.+.|+.|+++++ ++. ..|++++|++++...+ ...+..+++.+++..-.+.. +...++ ..|..++.+.
T Consensus 49 ~~~r~~l~~l~~--------~~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 119 (360)
T d1bjna_ 49 EEAEKDFRDLLN--------VPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAK-KYCTPNVFDA 119 (360)
T ss_dssp HHHHHHHHHHHT--------CCTTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHT-TTSEEEEEEC
T ss_pred HHHHHHHHHHhC--------CCCCCEEEEECCchHHHHhhhhhcccccccccceecccchhhhhHHHHh-hcCccceeec
Confidence 455555666654 333 3688888876665555 44566777877777655443 223334 3676666655
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
.+.+.. .+.+.+++.+. .++++++++..+|-||...+...+ .+..+++++++|-+.+.... + .
T Consensus 120 ~~~~~~--~~~~~~~~~~~------~~~~~v~v~~~~~~t~~~~~~~~i-----~~~~~~~~v~vDa~~~~~~~---~-v 182 (360)
T d1bjna_ 120 KVTVDG--LRAVKPMREWQ------LSDNAAYMHYCPNETIDGIAIDET-----PDFGADVVVAADFSSTILSR---P-I 182 (360)
T ss_dssp EEEETT--EEEECCGGGCC------CCSSCSCEEECSEETTTTEECCCC-----CCCCTTCCEEEECTTTTTSS---C-C
T ss_pred cccCCC--cchhhhhhhhc------cCCceeEEEecccccccCccccce-----ecccccceeeeeeeccccce---e-e
Confidence 443322 33344443332 366777777788888887664322 34567889999988774221 1 1
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHH------------HHHHHccccCCCcHH-HHHHHHH
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVV------------TTARRMSSFTLISSQ-TQYLLAS 320 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~------------~~~~~~~~~~~~s~~-~q~~~~~ 320 (442)
... +--+++.|.+|.++.|+. .|+++..+.... ............... ...+...
T Consensus 183 d~~-----------~~dv~~~ss~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (360)
T d1bjna_ 183 DVS-----------RYGVIYAGAQKNIGPAGL-TIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLV 250 (360)
T ss_dssp CGG-----------GCSEEEEETTTTTSSTTC-EEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHH
T ss_pred eec-----------cceeEEEEcccccccCCC-ceeEeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHH
Confidence 111 122567788898875553 444444221111 111111111111211 1111111
Q ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC----CceEEEEEecCCcccccChhhHHHHHHHHHHcCcEE
Q 046900 321 MLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKG----NAGLFCWMNLSPLLEEQTREGELALWDSMLHEVKLN 396 (442)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~ 396 (442)
.+. ...........++..+....+...+...+.....+ .....+.+.+++.. ...++.+.|. ++||.
T Consensus 251 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~------~~~~~~~~l~-~~Gi~ 321 (360)
T d1bjna_ 251 FKW--LKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSA------LDKLFLEESF-AAGLH 321 (360)
T ss_dssp HHH--HHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGG------GHHHHHHHHH-HTTEE
T ss_pred HHH--HhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCCcc------cHHHHHHHHH-HCCCE
Confidence 111 00011122333444444445555555543332211 12224555666543 2556666664 45999
Q ss_pred EeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHHH
Q 046900 397 ISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 397 v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~~ 437 (442)
+..|... -+.||+|+. ..++|+++++++.|+++.+++
T Consensus 322 ~~~G~~~----~g~~Ris~~~~~t~edV~~li~~l~e~~~~~ 359 (360)
T d1bjna_ 322 ALKGHRV----VGGMRASIYNAMPLEGVKALTDFMVEFERRH 359 (360)
T ss_dssp CCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCc----cCeEEEEecCCCCHHHHHHHHHHHHHHHHHc
Confidence 9887432 134999986 348999999999999987665
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.04 E-value=3.9e-08 Score=94.62 Aligned_cols=304 Identities=13% Similarity=0.094 Sum_probs=172.7
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhh---cCCC----CeEEEcCCCCcChHHhHhhhcCc
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFIL---ADPG----DALLVPTPYYPGFDRDLRWRTGI 167 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l---~~~g----d~Vl~~~p~y~~~~~~~~~~~G~ 167 (442)
+|..+..=.....+.+..| ++.-|.=+-.|++..-..+..+. .+.+ ..+++..+.+...........+.
T Consensus 102 QG~LQalfEfQtmi~eLTG----MdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (471)
T d1wyub1 102 QGALRLMWELGEYLKALTG----MDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGY 177 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHT----CSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhC----CCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeeecccc
Confidence 4444333333444555444 44444445567666555443332 1122 34556666666554444434788
Q ss_pred EEEEEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCC
Q 046900 168 KIVPIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAF 247 (442)
Q Consensus 168 ~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~ 247 (442)
.++.++.+..+ ..|.+.+..... .++.++++.+|++..+..- ..+.+++++++.+..+++|-+-.....
T Consensus 178 ~~~~~~~~~~~--~~~~~~~~~~~~------~~~a~v~v~~p~~~g~~e~---~~~~~~~~~h~~g~~~~~~~~~~~~~~ 246 (471)
T d1wyub1 178 QVREIPSGPEG--EVDLEALKRELG------PHVAALMLTNPNTLGLFER---RILEISRLCKEAGVQLYYDGANLNAIM 246 (471)
T ss_dssp EEEEECBCTTS--SBCHHHHHHHCS------TTEEEEEECSSCTTSCCCT---THHHHHHHHHHHTCEEEEEGGGGGGTT
T ss_pred eeecccccccc--cccchhhhhhhh------ccccceeeccCCCcccccc---hhhhhHHHHHhccccccccccchhhhh
Confidence 88888876533 467777776543 3777889999988765543 366777777788887777766443222
Q ss_pred CCCCcccHHHHHhhhcCCCCCcEEEEecCcccCC----CCCceeEEEeecCHHHHHHHH-H------------------c
Q 046900 248 SSSEFVSIAEILEARQYKDSERVHIVYSLSKDLG----LPGFRVGTIYSYNDKVVTTAR-R------------------M 304 (442)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g----~~G~RiG~i~~~~~~~~~~~~-~------------------~ 304 (442)
. ..+..+.. . .+++...++.|| ..|--+|++.+. +.+...+- + .
T Consensus 247 ~---l~~p~~~g--------~-div~vg~~q~~G~P~~~GGP~~G~~a~~-~~~~R~~PGRiV~~~~~~~~~~~~REqhI 313 (471)
T d1wyub1 247 G---WARPGDMG--------F-DVVHLNLHKTFTVPHGGGGPGSGPVGVK-AHLAPYLPVPLVERGEEGFYLDFDRPKSI 313 (471)
T ss_dssp T---TCCHHHHT--------C-SEEECCTTTTTCCCCTTSCCCCCCEEEC-GGGGGGCCSCEEEECSSCEEEECCCTTCC
T ss_pred h---ccccCccc--------c-cccccccccccccccccccccccceeeh-hhhhccCCCceecCCCccccccCCCcccc
Confidence 1 11222221 1 244445555543 345557888884 33332221 1 0
Q ss_pred cccCCCcH--HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCceEE--EEEecCCcccccChh
Q 046900 305 SSFTLISS--QTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSAGIECLKGNAGLF--CWMNLSPLLEEQTRE 380 (442)
Q Consensus 305 ~~~~~~s~--~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~ 380 (442)
+.-..++. +...++..++.. ...+-+++..+...++..++.+.|+..|+++.. .+.+| +.++++...
T Consensus 314 rRe~actnqaL~al~A~vYlsl--lG~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~-~~~ff~EFvv~~~~~~------ 384 (471)
T d1wyub1 314 GRVRSFYGNFLALVRAWAYIRT--LGLEGLKKAAALAVLNARYLKELLKEKGYRVPY-DGPSMHEFVAQPPEGF------ 384 (471)
T ss_dssp CCSSSTTSCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSS-CSSCCSCEEEBCSTTC------
T ss_pred cchhhhhhhHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHHHHHHHhhcCceecc-CcceeeEEeecCCCCC------
Confidence 00011222 222222222322 224567888889999999999999888887643 33333 234554432
Q ss_pred hHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEeec-CCHHHHHHHHHHHHHHHHHH
Q 046900 381 GELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFAN-MSEQTLEVALKRIHNFMQKR 437 (442)
Q Consensus 381 ~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~e~i~~~l~~l~~~l~~~ 437 (442)
++.++.++|++. |+.- +...|....++.+-+++.. -++++||++++.|++++++.
T Consensus 385 ~~~~i~k~L~~~-G~~~-~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~ 440 (471)
T d1wyub1 385 RALDLAKGLLEL-GFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKP 440 (471)
T ss_dssp CHHHHHHHHHHT-TCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHc-CCCC-CcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 256788888887 8853 3334443345678888862 28999999999999998753
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.98 E-value=3.9e-08 Score=93.42 Aligned_cols=291 Identities=15% Similarity=0.149 Sum_probs=175.4
Q ss_pred cchHHHHHHHHHHHHHHhCCCCccCCCcEEEecChHHHHHHHHHhhc-CCCCeEEEcCCCCcChHHhHhh---hcCcEEE
Q 046900 95 HGLKSFRQAMASFMEQIRGGRAKFDLNRIVVTAGATAANELLTFILA-DPGDALLVPTPYYPGFDRDLRW---RTGIKIV 170 (442)
Q Consensus 95 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~~~ai~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~---~~G~~v~ 170 (442)
+|..++.-.+..++.+..| ++.-+.-.-.|++.....+..+.. ...+.++++.-.++.+...... ..|++++
T Consensus 104 QG~Lq~l~e~q~~l~eltG----md~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv 179 (437)
T d1wyua1 104 QGVLQATFEYQTMIAELAG----LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLL 179 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHT----SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHhhC----CCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEE
Confidence 6777777778888888766 455556666787777766654432 2457899998888776554321 3899999
Q ss_pred EEecCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCC
Q 046900 171 PIHCDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSS 250 (442)
Q Consensus 171 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~ 250 (442)
.++.++.+ .+.+++ +.++.+++++|||. .|..- +++++++++++.|.+++.| +.- +....
T Consensus 180 ~v~~~~~~---~~~~~~----------~~~~Aavmi~~Pnt-~G~~e---d~~~i~~~~h~~G~l~~~~-ad~-~al~~- 239 (437)
T d1wyua1 180 TLPLEGGR---TPLPEV----------GEEVGAVVVQNPNF-LGALE---DLGPFAEAAHGAGALFVAV-ADP-LSLGV- 239 (437)
T ss_dssp EECCBTTB---CCCCCC----------CTTEEEEEEESSCT-TSBCC---CHHHHHHHHHHTTCEEEEE-CCT-TGGGT-
T ss_pred eeeccccc---chhhhh----------ccceeEEEEccccc-ccccc---chHHHHHHhhhccceEEee-ech-hhhhc-
Confidence 99987532 222221 23788999999965 68773 4788899999999876665 432 22222
Q ss_pred CcccHHHHHhhhcCCCCCcEEEEecCcccCCC----CCceeEEEeecCHHHHHHH-------------------------
Q 046900 251 EFVSIAEILEARQYKDSERVHIVYSLSKDLGL----PGFRVGTIYSYNDKVVTTA------------------------- 301 (442)
Q Consensus 251 ~~~s~~~~~~~~~~~~~~~vi~~~S~SK~~g~----~G~RiG~i~~~~~~~~~~~------------------------- 301 (442)
..+..++..+ |++++ +|.||. .|--.|++.+. +.+...+
T Consensus 240 -l~~Pg~~GaD---------i~~g~-~q~fg~p~g~GGP~~G~~a~~-~~l~r~lPgrivg~s~d~~G~~~~~l~lqtre 307 (437)
T d1wyua1 240 -LKPPGAYGAD---------IAVGD-GQSLGLPMGFGGPHFGFLATK-KAFVRQLPGRLVSETVDVEGRRGFILTLQARE 307 (437)
T ss_dssp -BCCHHHHTCS---------EEEEE-CTTTTCCCGGGCSCCEEEEEC-GGGGGGCCSCCEEEEEBTTSCEEEEECCGGGS
T ss_pred -cccccccccc---------eEeec-cceeccccCCCcCcccccccc-chhhccccccccccccccCCcccceeeccccc
Confidence 3344445332 55666 565542 23335788774 3322211
Q ss_pred ---HHcccc-CCC--cHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCceEE--EEEecCC
Q 046900 302 ---RRMSSF-TLI--SSQTQYLLASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLKGNAGLF--CWMNLSP 372 (442)
Q Consensus 302 ---~~~~~~-~~~--s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~--~~~~~~~ 372 (442)
++.... ..+ ..+....+..++.. +-.+-+++..+....+..++.+.|.+. |++...+. .+| +.++++.
T Consensus 308 qhIrRekatsnict~q~l~a~~a~~Y~~~--lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~-~~f~ef~v~~~~ 384 (437)
T d1wyua1 308 QYIRRAKAKSNITTNAQLTALMGAMYLAA--LGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK-PFFNEFALALPK 384 (437)
T ss_dssp HHHHGGGSSCCCCSCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS-SBCSEEEEECSS
T ss_pred ccccccccccchhhHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCC-CeeeEEEEECCC
Confidence 111111 111 12222222222221 113447788888888999999999886 77754332 223 2334443
Q ss_pred cccccChhhHHHHHHHHHHcCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHH
Q 046900 373 LLEEQTREGELALWDSMLHEVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFM 434 (442)
Q Consensus 373 ~~~~~~~~~~~~l~~~l~~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l 434 (442)
++.++.++|++. |+.. |-..|....++.+.+++. .-++++|+++++.|++++
T Consensus 385 --------~~~~i~k~L~d~-G~~~-~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 385 --------DPEAVRRALAER-GFHG-ATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp --------CHHHHHHHHHHT-TCCC-CEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred --------CHHHHHHHHHhC-CCCC-CcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 367888888777 8852 111222223578899997 228999999999998874
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=98.88 E-value=1.7e-09 Score=101.62 Aligned_cols=282 Identities=10% Similarity=0.041 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCC-cEEEecChHHHHHHHH-HhhcCCCCeEEEcCCCCcC--hHHhHhhhcCcEEEEEe
Q 046900 98 KSFRQAMASFMEQIRGGRAKFDLN-RIVVTAGATAANELLT-FILADPGDALLVPTPYYPG--FDRDLRWRTGIKIVPIH 173 (442)
Q Consensus 98 ~~lr~~ia~~l~~~~~~~~~~~~~-~i~~t~G~~~ai~~~~-~~l~~~gd~Vl~~~p~y~~--~~~~~~~~~G~~v~~v~ 173 (442)
.+.|+.++++++ ++.+ .|++++|++++...+. ..+..+++.|++....+.. +...+. ..+..++...
T Consensus 51 ~~~r~~l~~l~~--------~~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~-~~~~~~~~~~ 121 (360)
T d1w23a_ 51 EQAQNLLRELLQ--------IPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAK-LLGETHIAAS 121 (360)
T ss_dssp HHHHHHHHHHHT--------CCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH-TTSEEEEEEE
T ss_pred HHHHHHHHHHhC--------CCCCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccchhhhhHHHHH-Hhhhcceeec
Confidence 456666666664 4444 6888888877776554 4456677888877654432 223334 2566665555
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCCcCCCHHHHHHHHHHHHhcCcEEEEeccCCcCCCCCCCcc
Q 046900 174 CDSSNNFQITPQALEAAYKEAESKDMRVRGVLITNPSNPLGATIQRSVLEELLDFATRKNIHLVSDEIYSGSAFSSSEFV 253 (442)
Q Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~~vi~De~y~~~~~~~~~~~ 253 (442)
...... .+.+.+++... ...... -+|-||.+.+ +.++.++|+++++++|+|.+.+-... ..
T Consensus 122 ~~~~~~--~~~~~~~~~~~-------~~~~~~---~~~~tg~~~~---~~~i~~~~~~~g~l~ivDavqs~g~~----~i 182 (360)
T d1w23a_ 122 TKANSY--QSIPDFSEFQL-------NENDAY---LHITSNNTIY---GTQYQNFPEINHAPLIADMSSDILSR----PL 182 (360)
T ss_dssp CGGGTS--CSCCCGGGCCC-------CTTEEE---EEEESEETTT---TEECSSCCCCCSSCEEEECTTTTTSS----CC
T ss_pred cccccc--cchhhhhhccc-------ccccce---eEecCCcccc---ceeeeeccccceeeEEeecccccccc----cc
Confidence 433221 22233332211 122222 2456788877 56778889999999999999884322 22
Q ss_pred cHHHHHhhhcCCCCCcEEEEecCcccCCCCCceeEEEeecCHHHH-------------HHHHHccccCCCcHHHHHH---
Q 046900 254 SIAEILEARQYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVV-------------TTARRMSSFTLISSQTQYL--- 317 (442)
Q Consensus 254 s~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G~RiG~i~~~~~~~~-------------~~~~~~~~~~~~s~~~q~~--- 317 (442)
.+..+ + +.+.+++|.++++|. .|+++.. +... ...+...............
T Consensus 183 d~~~~---------~--vd~~~~~~~k~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (360)
T d1w23a_ 183 KVNQF---------G--MIYAGAQKNLGPSGV-TVVIVKK-DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRN 249 (360)
T ss_dssp CGGGC---------S--EEEEETTTTTSCTTC-EEEEEEH-HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHH
T ss_pred ccccc---------c--ceEEeeccccccCCc-ceeeEec-hhhhcccccCCcchhhhhhhhhhhhcccccceeeechhH
Confidence 22211 2 345677787765553 4554431 1111 0111111111112211111
Q ss_pred -HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec----CCceEEEEEecCCcccccChhhHHHHHHHHHH
Q 046900 318 -LASMLSNKKFTENYIKTNRERLQKRYQMIIEGLRSA-GIECLK----GNAGLFCWMNLSPLLEEQTREGELALWDSMLH 391 (442)
Q Consensus 318 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 391 (442)
...++.... .....+.....+.......... ...... ..+...+.+.+++.. ...++...|.+
T Consensus 250 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~------~~~~~~~~l~~ 318 (360)
T d1w23a_ 250 VLDWIKDLGG-----AEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEE------LNQQFLAKAKE 318 (360)
T ss_dssp HHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHH------HHHHHHHHHHH
T ss_pred HHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEEcCCCc------cHHHHHHHHHH
Confidence 111122211 1112222222333333333322 222211 112224556666532 25567766655
Q ss_pred cCcEEEeCCCCCCCCCCCEEEEEee-cCCHHHHHHHHHHHHHHHHH
Q 046900 392 EVKLNISPGSSCHCSEPGWFRVCFA-NMSEQTLEVALKRIHNFMQK 436 (442)
Q Consensus 392 ~~gi~v~pg~~f~~~~~~~iRls~~-~~~~e~i~~~l~~l~~~l~~ 436 (442)
+||.++.|.... +.+|+|+. ..+.|+++++++.|+++.++
T Consensus 319 -~GI~~~~G~~~~----ggiRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 319 -QGFVGLNGHRSV----GGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp -TTEESCBCCTTT----CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -CCCeeeeCCCcc----CcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 499998875432 23999985 34889999999999988764
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=80.93 E-value=7.4 Score=32.29 Aligned_cols=102 Identities=16% Similarity=0.186 Sum_probs=61.5
Q ss_pred cEEEecChHHHHHHHHHhhcCCCCeEEEcCCCCcChHHhHh---hhcCcEEEEEecCCCCCCcCCHHHHHHHHHHHHhcC
Q 046900 122 RIVVTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLR---WRTGIKIVPIHCDSSNNFQITPQALEAAYKEAESKD 198 (442)
Q Consensus 122 ~i~~t~G~~~ai~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~---~~~G~~v~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 198 (442)
.++||.|++..=..+.+.|.+.|-.|++..-.-........ ...|.++..+..|- -|.+.+++.+++..++.
T Consensus 11 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~ 85 (260)
T d1h5qa_ 11 TIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDV-----SNTDIVTKTIQQIDADL 85 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCT-----TCHHHHHHHHHHHHHHS
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccC-----CCHHHHHHHHHHHHHHh
Confidence 45555554433344567788889778776655444433222 12577888887764 36788888887766555
Q ss_pred CceeEEEEeCC-CCCCCc--CCCHHHHHHHHHHH
Q 046900 199 MRVRGVLITNP-SNPLGA--TIQRSVLEELLDFA 229 (442)
Q Consensus 199 ~~~~~v~l~~P-~NPtG~--~~~~~~l~~l~~~~ 229 (442)
.+...+ ++|. .++.+. -++.++++++.++-
T Consensus 86 g~iDil-VnnAg~~~~~~~~~~~~~~~~~~~~~N 118 (260)
T d1h5qa_ 86 GPISGL-IANAGVSVVKPATELTHEDFAFVYDVN 118 (260)
T ss_dssp CSEEEE-EECCCCCCCSCGGGCCHHHHHHHHHHH
T ss_pred CCCcEe-cccccccccCCHHHhcccccccccccc
Confidence 567754 4444 233332 35777777776643
|