Citrus Sinensis ID: 046902
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 393 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SU30 | 413 | F-box protein CPR30 OS=Ar | yes | no | 0.954 | 0.907 | 0.422 | 1e-86 | |
| Q9SUY0 | 402 | F-box protein At4g22390 O | no | no | 0.944 | 0.922 | 0.361 | 1e-63 | |
| Q8GXC7 | 427 | F-box/kelch-repeat protei | no | no | 0.809 | 0.744 | 0.327 | 1e-40 | |
| Q9SFC7 | 417 | F-box protein At3g07870 O | no | no | 0.702 | 0.661 | 0.272 | 2e-21 | |
| Q9LIR8 | 364 | F-box/kelch-repeat protei | no | no | 0.763 | 0.824 | 0.280 | 1e-20 | |
| Q9LMB0 | 350 | Putative F-box protein At | no | no | 0.786 | 0.882 | 0.282 | 2e-15 | |
| Q2V414 | 436 | F-box/LRR-repeat protein | no | no | 0.816 | 0.736 | 0.275 | 8e-15 | |
| Q9LPW2 | 416 | Putative F-box/kelch-repe | no | no | 0.687 | 0.649 | 0.232 | 1e-14 | |
| Q9FVV8 | 392 | Putative F-box protein At | no | no | 0.702 | 0.704 | 0.255 | 2e-14 | |
| Q9SAF4 | 435 | Putative F-box/kelch-repe | no | no | 0.674 | 0.609 | 0.230 | 7e-14 |
| >sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 320 bits (820), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 254/402 (63%), Gaps = 27/402 (6%)
Query: 5 IPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGAH 64
IP+DI+ IF R P K+L+R R +SK C LI+ DFI+ HL+ + T + ++L+GA
Sbjct: 4 IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGAL 63
Query: 65 DLYALDFDTLTLGTGVQPHHHPLNIGSGTEVLGSCNGLIALCNSVQELALFNPSTRKLKT 124
LY++D D+L + V+ HP+ G TEV GS NGLI L NS +LA+FNPSTR++
Sbjct: 64 RLYSVDLDSLDSVSDVE---HPMKRGGPTEVFGSSNGLIGLSNSPTDLAVFNPSTRQIHR 120
Query: 125 LPLPPCLVGFPSA-----FTFYGFGQDKINDDYKLVRVLHFKGNDGDDV------EVEVY 173
LP P + P + FYG G D ++DDYK+VR++ FK + D++ EV+V+
Sbjct: 121 LP--PSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVF 178
Query: 174 SLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS---TRSVIVAF 230
SLK NSW+RI ++ ++ + + YH L+R+GYGVLAG +LHWV P+ ++IV F
Sbjct: 179 SLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRF 238
Query: 231 DLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWT 290
DL EEF + P++V ++ +D+G L+GCLC+ Y+ YVD+WMMKE+ V++SWT
Sbjct: 239 DLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWT 298
Query: 291 KLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKIDTHGLDF 350
K+F+VQ+P +SF ++RPL YS++ K+LLE+ KLVWFDLE+ + T++I +
Sbjct: 299 KVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTLRIKDCPSSY 358
Query: 351 VDTEICMASLVPLSDKGGGCGGGINGMK-RRNLEEKEKRHKK 391
E+ ++SLV GC G +N +K R+ + KE R K
Sbjct: 359 -SAELVVSSLVL------GCKGDLNNIKYRKEQQAKEAREAK 393
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Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 145/401 (36%), Positives = 221/401 (55%), Gaps = 30/401 (7%)
Query: 6 PLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGAHD 65
P D+I +F R +L++ R +SK C SLIDS +F+ HL + T + ++L+G
Sbjct: 5 PTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILLRGPRL 64
Query: 66 LYALDFDTLTLGTGVQPHHHPLNIGSGTEVLGSCNGLIALCNSVQELALFNPSTRKLKTL 125
L ++ D+ V HPL G TEV GS NG+I LCNS +LA+FNPSTRK+ L
Sbjct: 65 LRTVELDS---PENVSDIPHPLQAGGFTEVFGSFNGVIGLCNSPVDLAIFNPSTRKIHRL 121
Query: 126 PLPPCLVGFPS-----AFTFYGFGQDKINDDYKLVRVLHFKGNDGDD-----VEVEVYSL 175
P+ P + FP + FYG G D + DD+K+VR++ K +G VEV+V+SL
Sbjct: 122 PIEP--IDFPERDITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPVEVKVFSL 179
Query: 176 KTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS---TRSVIVAFDL 232
K NSW+R+ + F + Y YH L R+GYGV+ LHW+ P+ + I+ +DL
Sbjct: 180 KKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNAIIKYDL 239
Query: 233 VAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKL 292
+++ L P + Y ++D+G L+GC+C+ + +VD+W++KE+ +SWTKL
Sbjct: 240 ASDDIGVLSFPQEL---YIEDNMDIGVLDGCVCLMCYDEYSHVDVWVLKEYEDYKSWTKL 296
Query: 293 FSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR-EKLVWFDLETNSLRTVKIDTHGLDFV 351
+ V +P S F+RPL S++ K+LLE+ L+WFDLE+ SL T I+
Sbjct: 297 YRVPKPESVESVEFIRPLICSKDRSKILLEINNAANLMWFDLESQSLTTAGIECDSSFTA 356
Query: 352 DTEICMASLVPLSDKGGGCGGGINGMKRRNLEEKEKRHKKK 392
D I ++SLV GC G +R ++ + K+
Sbjct: 357 D--ILVSSLV------LGCKGDPTQAQRSKDQKMMPKSTKR 389
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 126/385 (32%), Positives = 196/385 (50%), Gaps = 67/385 (17%)
Query: 5 IPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLN---HSITTRSNRRLILK 61
+P +IIT I R P KS+ RFRCVSK C+L F K+HL+ + + RS R ++
Sbjct: 36 LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIV 95
Query: 62 GAHDLYALDFDTLTLGTGVQ-----PHHHPLN-------------IG------------- 90
+H+LY+LDF+++ G G++ H++PL +G
Sbjct: 96 SSHNLYSLDFNSI--GDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKL 153
Query: 91 -------SGTEVLGSCNGLIALCNSVQELALFNPSTRKLKTLP---LPPCLVGFPSAFTF 140
+ E++GS NGL+ + + L+NP+T K LP P + F
Sbjct: 154 NAKSYRRNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQT 213
Query: 141 YGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHS 200
YGFG D + DDYKLV+++ D ++ VYSLK +SWRRI NL + D Y S
Sbjct: 214 YGFGFDGLTDDYKLVKLV---ATSEDILDASVYSLKADSWRRICNLNY---EHNDGSYTS 267
Query: 201 LFRKGYGVLAGGALHWVSPKSS-TRSVIVAFDLVAEEFYQLPLPDSV-NVSYANVHVDVG 258
GV GA+HWV +S + V+VAFD+ EEF ++P+PD + S+ + VG
Sbjct: 268 ------GVHFNGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVG 321
Query: 259 SLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVK 318
SL G LCV V+ D+W+M E+ +SW+++ + ++PL ++N +
Sbjct: 322 SLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRI------RINLLYRSMKPLCSTKNDEE 375
Query: 319 LLLEVRREKLVWFDLETNSLRTVKI 343
+LLE+ + LV ++ ETN+ + I
Sbjct: 376 VLLELDGD-LVLYNFETNASSNLGI 399
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 151/330 (45%), Gaps = 54/330 (16%)
Query: 3 KKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRL---- 58
+ +P DII IF R P+ S+ R V ++ S++ +L + S T+ L
Sbjct: 26 ESLPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHG--RLSSSSSSPTKPCLLLHCDS 83
Query: 59 -ILKGAHDLYALDFDTLTLGTGVQPHHHPLNIGSGT---EVLGSCNGLIALCNSV--QEL 112
I G H L D ++ L S +V+GSCNGL+ L +S+ L
Sbjct: 84 PIRNGLHFL-----DLSEEEKRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSL 138
Query: 113 ALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDD----- 167
L+NP T +L LP C + +GFG ++ +YK++++++F+G+ ++
Sbjct: 139 YLYNPFT--TNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYR 196
Query: 168 ---------VEVEVYSLKTN------SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGG 212
EV++ +L + SWR + P + ++ L G
Sbjct: 197 GRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAP-----------YKFVKRSSEALVNG 245
Query: 213 ALHWVS-PKSSTRS-VIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFY 270
LH+V+ P+ V+FDL EEF ++P PD ++ N + +L+GCLC +
Sbjct: 246 RLHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKPDCGGLNRTNHR--LVNLKGCLCAVVYG 303
Query: 271 NLVYVDMWMMKEHAVKESWTKLFSVQEPTP 300
N +D+W+MK + VKESW K +S+ P
Sbjct: 304 NYGKLDIWVMKTYGVKESWGKEYSIGTYLP 333
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 153/331 (46%), Gaps = 31/331 (9%)
Query: 5 IPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHL------NHSITTRSNRRL 58
+PL+++ I R PVKSL RF+CV + SLI F H + +T+S +
Sbjct: 14 LPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGV 73
Query: 59 ILKGAHDLYALDFDTLTLGTGVQPHHHPLNI--GSGTEVLGSCNGLIAL-CNSVQELALF 115
I + L + +L + V H + +V+G+C+GL+ + + L L+
Sbjct: 74 ITTSRYHLKSCCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVCFHVDYDKSLYLW 133
Query: 116 NPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSL 175
NP+ + + L YGFG D+ DDYK+V +L + +E ++YS
Sbjct: 134 NPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQRHQV--KIETKIYST 191
Query: 176 KTNSWRRISNLPR--FLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLV 233
+ WR ++ P + D + G+ G L+W + SS+ I+++D+
Sbjct: 192 RQKLWRSNTSFPSGVVVAD----------KSRSGIYINGTLNWAATSSSSSWTIISYDMS 241
Query: 234 AEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLF 293
+EF +LP P V + +G L GCL + + D+W+MKE SW+KL
Sbjct: 242 RDEFKELPGP--VCCGRGCFTMTLGDLRGCLSMVCYCKGANADVWVMKEFGEVYSWSKLL 299
Query: 294 SVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR 324
S+ T F+RPL S +G+ +LLE R
Sbjct: 300 SIPGLTD-----FVRPLWIS-DGLVVLLEFR 324
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LMB0|FB10_ARATH Putative F-box protein At1g19160 OS=Arabidopsis thaliana GN=At1g19160 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 155/350 (44%), Gaps = 41/350 (11%)
Query: 5 IPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGAH 64
IP D + I R PVKSL RF CVSK C S+I S+ FI L+ + + T S + +
Sbjct: 2 IPEDPLVEILLRLPVKSLARFLCVSKRCYSIIRSRHFINLYQSRASTRESRVMFAFRDTN 61
Query: 65 DLYALDFDTLTLGTGVQPHHHPLNIGSGTEVLGSC-NGLIALCNSVQELALFNPSTRKLK 123
+ +F +L+ QP NI S + + C NGLI + + L + NP T+K+
Sbjct: 62 TFFRWNFFSLS-----QPPSSVTNIDSTSYCMPVCVNGLICV-EHMFRLWICNPVTKKIT 115
Query: 124 TLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRI 183
P C G FT + G D IN YK++ + VEV + SWR I
Sbjct: 116 L--FPDC--GPRKQFTTWYMGYDPINYQYKVLYLSREHLIAPYIVEVFTFG-DEGSWRMI 170
Query: 184 SNLPRFLRDFYDYLYHSLFRKG---YGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQL 240
D +HS +G +GVL GA + + IV FD+ E+F +
Sbjct: 171 EA---------DENFHSPETRGVCTHGVLYYGAY------TGDGAKIVRFDVRTEKFGKF 215
Query: 241 PLPDSVNVSYANVHVDVGSL---EGCLCVFRFYNLVYVDMWMMKEHAVKESWTK--LFSV 295
+ S V++ + +L +G L + D+W++ E A K W+K +F
Sbjct: 216 IEMPAEACSIHGVYLGLYTLLDYQGKLGLLATQATSTYDLWVL-EDAEKHEWSKVSIFIT 274
Query: 296 QEPTPTRSFLFLRPLGYSRNGVKLLLEVRRE----KLVWFDLETNSLRTV 341
+E P ++ +G+ +L++ R E +++ DL+ N R V
Sbjct: 275 REMCP-YDLIWPGVVGFVAGSGELIVTARDELGQFHILYVDLKKNRSREV 323
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2V414|FBL37_ARATH F-box/LRR-repeat protein At2g40920 OS=Arabidopsis thaliana GN=At2g40920 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 171/367 (46%), Gaps = 46/367 (12%)
Query: 7 LDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLIL----KG 62
LD + I R P+ SL RF+CVSK SLI S+ F +L ++ TR RL + G
Sbjct: 56 LDHVMEILMRFPLTSLTRFKCVSKQWSSLISSRYFC--NLLYTTVTRQQPRLYMCLKDDG 113
Query: 63 AHDLYALDFDTLTLG-TGVQPHHHPLNI-GSGTEVLGSCNGLIALCNSVQELA-LFNPST 119
H + L + + G T L+I G G L GL +C S ++ A ++NPST
Sbjct: 114 GHRVL-LSISSPSRGNTSFVVVEQDLSIPGMGGFFLNVVRGL--MCFSRRKKARIYNPST 170
Query: 120 RKLKTLPLPPCLV----GFPSAFTFYGFGQDKINDDYKLV------RVLHFKGNDGDDVE 169
++L TLP + G Y G D ++D YKLV +L GN E
Sbjct: 171 KQLLTLPAIKSDIVAQQGQTKHHPRYYIGHDPVSDQYKLVCTVAISSLLPRLGNLKS--E 228
Query: 170 VEVYSLKT-NSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIV 228
V++L+ SW+++ L +Y +H+ +G +G + +++ + V+V
Sbjct: 229 HWVFALEAGGSWKKVVPLE-------NYRHHAPSTEGRST-SGSVVRYMAWPDNYNCVVV 280
Query: 229 AFDLVAEEFYQLPLPDSVN----VSYANVHVDVGSLEGCLCVFRFYNLV---YVDMWMMK 281
+FD+ +E+ +P+P ++ V + D+ G + +F NL D+W++
Sbjct: 281 SFDIRSEQLTIIPVPREIHLDEVVPAVTMMADLIEYGGKIAIFYHTNLKDEGSADLWVL- 339
Query: 282 EHAVKESWTKLFSVQEPTPTR--SFLFLRPLGYSRNGVKLLLEVR---REKLVWFDLETN 336
E K W+K V +P + L G +++G +L V R +++++L++N
Sbjct: 340 EDTGKSEWSKKTLVLQPCQRHLVEDIELIVKGTTQDGKVILAPVEMHSRFYILYYNLQSN 399
Query: 337 SLRTVKI 343
LR V+I
Sbjct: 400 DLRKVEI 406
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPW2|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 142/322 (44%), Gaps = 52/322 (16%)
Query: 2 SKKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSN-----R 56
S +P D++ IF + PVK+L+RF+ +SK S ++S F + HL I RS+
Sbjct: 30 SSSLPDDVVEEIFLKLPVKALMRFKSLSKQWRSTLESCYFSQRHLK--IAERSHVDHPKV 87
Query: 57 RLILKGAHDLYALDFDTLTLGTGV----------QPHHHPLNIGSGTEVLGSCNGLIALC 106
+I + + + F T++L + + HHP+ SC+G+ +
Sbjct: 88 MIITEKWNPDIEISFRTISLESVSFLSSALFNFPRGFHHPIYASE------SCDGIFCIH 141
Query: 107 N-SVQELALFNPSTRKLKTLP----------LPPCLVGFPSAFTFYGFGQDKINDDYKLV 155
+ Q++ + NP+TR + LP L P L K DYKLV
Sbjct: 142 SPKTQDIYVVNPATRWFRQLPPARFQIFMHKLNPTLDTLRDMIPVNHLAFVKAT-DYKLV 200
Query: 156 RVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALH 215
+ + + + EV+ K N+WR ++ +P + ++ A G L+
Sbjct: 201 WL--YNSDASRVTKCEVFDFKANAWRYLTCIPSY----------RIYHDQKPASANGTLY 248
Query: 216 WVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFY--NLV 273
W + + ++A D+ E F LP P S+ S H+D+ ++ LC++ +
Sbjct: 249 WFTETYNAEIKVIALDIHTEIFRLLPKP-SLIASSEPSHIDMCIIDNSLCMYETEGDKKI 307
Query: 274 YVDMWMMKEHAVKESWTKLFSV 295
++W +K + +++W K++++
Sbjct: 308 IQEIWRLK--SSEDAWEKIYTI 327
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FVV8|FB87_ARATH Putative F-box protein At1g71320 OS=Arabidopsis thaliana GN=At1g71320 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 146/340 (42%), Gaps = 64/340 (18%)
Query: 5 IPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGAH 64
IP DI GIF P+KSL RF+ +SK S+I+S F L + N + + H
Sbjct: 14 IPDDIAEGIFHHLPIKSLARFKVLSKKWTSMIESTYFSHKRLIRTGLPTPNMKFLHISQH 73
Query: 65 ------DLYA--LDFDTLTLGTGVQPHHHPLNIGSG--TEVLGSCNGLIAL--CNSVQEL 112
+ Y+ + F T Q + + +VLGSC+GL+ L + + +
Sbjct: 74 FTANFVEEYSNSITFLLETFSRDDQNNRKTFDESQNKTIQVLGSCDGLVLLRIHDDFRSI 133
Query: 113 ALFNPSTRKLKTLPLPPCLVGFPSAFTFY------------------------------G 142
L NP+T++ + L P + +P ++ G
Sbjct: 134 YLINPTTKE--HMKLSPEFMQWPFTLSYLTPAMANKPWRQLSQSVLDYDISVKRMPSLAG 191
Query: 143 FGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLF 202
FG+D + YK+V + + + +V SL R + FYD ++H +F
Sbjct: 192 FGKDIVKKSYKVVLIYTRYEIHDHEFKAKVLSLDNGEQRDVG--------FYD-IHHCIF 242
Query: 203 -RKGYGVLAGGALHWVSPK--SSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGS 259
+ V A G+L W++ K S T ++A DL EEF + LP+ + YA ++++ +
Sbjct: 243 CDEQTSVYANGSLFWLTLKKLSQTSYQLLAIDLHTEEFRWILLPE-CDTKYA-TNIEMWN 300
Query: 260 LEGCLC---VFRFYNLVYVDMWMMKEHAVKESWTKLFSVQ 296
L LC V NLV +W + + E W K++S++
Sbjct: 301 LNERLCLSDVLESSNLV---VWSLHQEYPTEKWEKIYSIK 337
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SAF4|FBK3_ARATH Putative F-box/kelch-repeat protein At1g13200 OS=Arabidopsis thaliana GN=At1g13200 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 143/338 (42%), Gaps = 73/338 (21%)
Query: 5 IPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRS---NRRLILK 61
+P D++ IF R PVK+L+R + +SK S I+S+ F + HL +I ++ + +++L
Sbjct: 43 LPNDVLEEIFLRFPVKALIRLKSLSKQWRSTIESRSFEERHL--TIAKKAFVDHPKVMLV 100
Query: 62 GAHDLYALDFDTLTLGTGVQPH---------------------HHPLNIGSGTEVLGSCN 100
G D GTG++P + P + + SC+
Sbjct: 101 GEEDP--------IRGTGIRPDTDIGFRLFCLESASLLSFTRLNFPQGFFNWIYISESCD 152
Query: 101 GLIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKIN---------- 149
GL + + + + NP+TR L+ LP GF + + + N
Sbjct: 153 GLFCIHSPKSHSVYVVNPATRWLRLLPP----AGFQILIHKFNPTEREWNVVMKSIFHLA 208
Query: 150 ----DDYKLV-------RVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLY 198
DYKLV ++ + + E++ + N+WR ++ P
Sbjct: 209 FVKATDYKLVWLYNCDKYIVDASSPNVGVTKCEIFDFRKNAWRYLACTPS---------- 258
Query: 199 HSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVG 258
H +F A G+++W + + R +VAFD+ E F LP + H+D+
Sbjct: 259 HQIFYYQKPASANGSVYWFTEPYNERIEVVAFDIQTETFRLLPKINPAIAGSDPHHIDMC 318
Query: 259 SLEGCLCVF-RFYNLVYVDMWMMKEHAVKESWTKLFSV 295
+L+ LC+ R + + D+W +K +++W K+FS+
Sbjct: 319 TLDNSLCMSKREKDTMIQDIWRLKPS--EDTWEKIFSI 354
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 393 | ||||||
| 30682162 | 413 | F-box protein CPR30 [Arabidopsis thalian | 0.954 | 0.907 | 0.422 | 8e-85 | |
| 110738553 | 413 | hypothetical protein [Arabidopsis thalia | 0.954 | 0.907 | 0.422 | 9e-85 | |
| 4725955 | 408 | putative protein [Arabidopsis thaliana] | 0.954 | 0.919 | 0.422 | 1e-84 | |
| 224137296 | 419 | predicted protein [Populus trichocarpa] | 0.959 | 0.899 | 0.440 | 2e-81 | |
| 297809553 | 414 | F-box family protein [Arabidopsis lyrata | 0.954 | 0.905 | 0.414 | 3e-81 | |
| 255583935 | 395 | conserved hypothetical protein [Ricinus | 0.956 | 0.951 | 0.457 | 5e-80 | |
| 297799772 | 406 | hypothetical protein ARALYDRAFT_329378 [ | 0.949 | 0.918 | 0.412 | 1e-77 | |
| 224089631 | 400 | predicted protein [Populus trichocarpa] | 0.966 | 0.95 | 0.433 | 1e-77 | |
| 224053103 | 408 | predicted protein [Populus trichocarpa] | 0.951 | 0.916 | 0.430 | 3e-73 | |
| 255583943 | 389 | ubiquitin-protein ligase, putative [Rici | 0.921 | 0.930 | 0.408 | 1e-67 |
| >gi|30682162|ref|NP_192993.2| F-box protein CPR30 [Arabidopsis thaliana] gi|145333023|ref|NP_001078377.1| F-box protein CPR30 [Arabidopsis thaliana] gi|142989747|sp|Q9SU30.2|CPR30_ARATH RecName: Full=F-box protein CPR30; AltName: Full=Protein CONSTITUTIVE EXPRESSER OF PR GENES 30 gi|332657747|gb|AEE83147.1| F-box protein CPR30 [Arabidopsis thaliana] gi|332657748|gb|AEE83148.1| F-box protein CPR30 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 320 bits (820), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 254/402 (63%), Gaps = 27/402 (6%)
Query: 5 IPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGAH 64
IP+DI+ IF R P K+L+R R +SK C LI+ DFI+ HL+ + T + ++L+GA
Sbjct: 4 IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGAL 63
Query: 65 DLYALDFDTLTLGTGVQPHHHPLNIGSGTEVLGSCNGLIALCNSVQELALFNPSTRKLKT 124
LY++D D+L + V+ HP+ G TEV GS NGLI L NS +LA+FNPSTR++
Sbjct: 64 RLYSVDLDSLDSVSDVE---HPMKRGGPTEVFGSSNGLIGLSNSPTDLAVFNPSTRQIHR 120
Query: 125 LPLPPCLVGFPSA-----FTFYGFGQDKINDDYKLVRVLHFKGNDGDDV------EVEVY 173
LP P + P + FYG G D ++DDYK+VR++ FK + D++ EV+V+
Sbjct: 121 LP--PSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVF 178
Query: 174 SLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS---TRSVIVAF 230
SLK NSW+RI ++ ++ + + YH L+R+GYGVLAG +LHWV P+ ++IV F
Sbjct: 179 SLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRF 238
Query: 231 DLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWT 290
DL EEF + P++V ++ +D+G L+GCLC+ Y+ YVD+WMMKE+ V++SWT
Sbjct: 239 DLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWT 298
Query: 291 KLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKIDTHGLDF 350
K+F+VQ+P +SF ++RPL YS++ K+LLE+ KLVWFDLE+ + T++I +
Sbjct: 299 KVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTLRIKDCPSSY 358
Query: 351 VDTEICMASLVPLSDKGGGCGGGINGMK-RRNLEEKEKRHKK 391
E+ ++SLV GC G +N +K R+ + KE R K
Sbjct: 359 -SAELVVSSLVL------GCKGDLNNIKYRKEQQAKEAREAK 393
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110738553|dbj|BAF01202.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 320 bits (819), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 254/402 (63%), Gaps = 27/402 (6%)
Query: 5 IPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGAH 64
IP+DI+ IF R P K+L+R R +SK C LI+ DFI+ HL+ + T + ++L+GA
Sbjct: 4 IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGAL 63
Query: 65 DLYALDFDTLTLGTGVQPHHHPLNIGSGTEVLGSCNGLIALCNSVQELALFNPSTRKLKT 124
LY++D D+L + V+ HP+ G TEV GS NGLI L NS +LA+FNPSTR++
Sbjct: 64 RLYSVDLDSLDSVSDVE---HPMKRGGPTEVFGSSNGLIGLSNSPTDLAVFNPSTRQIHR 120
Query: 125 LPLPPCLVGFPSA-----FTFYGFGQDKINDDYKLVRVLHFKGNDGDDV------EVEVY 173
LP P + P + FYG G D ++DDYK+VR++ FK + D++ EV+V+
Sbjct: 121 LP--PSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVF 178
Query: 174 SLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS---TRSVIVAF 230
SLK NSW+RI ++ ++ + + YH L+R+GYGVLAG +LHWV P+ ++IV F
Sbjct: 179 SLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRF 238
Query: 231 DLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWT 290
DL EEF + P++V ++ +D+G L+GCLC+ Y+ YVD+WMMKE+ V++SWT
Sbjct: 239 DLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWT 298
Query: 291 KLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKIDTHGLDF 350
K+F+VQ+P +SF ++RPL YS++ K+LLE+ KLVWFDLE+ + T++I +
Sbjct: 299 KVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTLRIKDCPSSY 358
Query: 351 VDTEICMASLVPLSDKGGGCGGGINGMK-RRNLEEKEKRHKK 391
E+ ++SLV GC G +N +K R+ + KE R K
Sbjct: 359 -SAELVVSSLVL------GCKGDLNNIKYRKEQQAKEAREAK 393
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4725955|emb|CAB41726.1| putative protein [Arabidopsis thaliana] gi|7267958|emb|CAB78299.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 254/402 (63%), Gaps = 27/402 (6%)
Query: 5 IPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGAH 64
IP+DI+ IF R P K+L+R R +SK C LI+ DFI+ HL+ + T + ++L+GA
Sbjct: 4 IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGAL 63
Query: 65 DLYALDFDTLTLGTGVQPHHHPLNIGSGTEVLGSCNGLIALCNSVQELALFNPSTRKLKT 124
LY++D D+L + V+ HP+ G TEV GS NGLI L NS +LA+FNPSTR++
Sbjct: 64 RLYSVDLDSLDSVSDVE---HPMKRGGPTEVFGSSNGLIGLSNSPTDLAVFNPSTRQIHR 120
Query: 125 LPLPPCLVGFPSA-----FTFYGFGQDKINDDYKLVRVLHFKGNDGDDV------EVEVY 173
LP P + P + FYG G D ++DDYK+VR++ FK + D++ EV+V+
Sbjct: 121 LP--PSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVF 178
Query: 174 SLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS---TRSVIVAF 230
SLK NSW+RI ++ ++ + + YH L+R+GYGVLAG +LHWV P+ ++IV F
Sbjct: 179 SLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRF 238
Query: 231 DLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWT 290
DL EEF + P++V ++ +D+G L+GCLC+ Y+ YVD+WMMKE+ V++SWT
Sbjct: 239 DLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWT 298
Query: 291 KLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKIDTHGLDF 350
K+F+VQ+P +SF ++RPL YS++ K+LLE+ KLVWFDLE+ + T++I +
Sbjct: 299 KVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTLRIKDCPSSY 358
Query: 351 VDTEICMASLVPLSDKGGGCGGGINGMK-RRNLEEKEKRHKK 391
E+ ++SLV GC G +N +K R+ + KE R K
Sbjct: 359 -SAELVVSSLVL------GCKGDLNNIKYRKEQQAKEAREAK 393
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137296|ref|XP_002322522.1| predicted protein [Populus trichocarpa] gi|222867152|gb|EEF04283.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 184/418 (44%), Positives = 251/418 (60%), Gaps = 41/418 (9%)
Query: 4 KIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGA 63
KIP +IIT IF + PVKSLLRFR +SK CSLID DFIK HL HSIT +SN +ILK
Sbjct: 3 KIPHEIITDIFQQLPVKSLLRFRSLSKPICSLIDGPDFIKFHLYHSITAKSNHSVILK-E 61
Query: 64 HDLYALDFDTLTLGTGVQPHHHPLNIGSGTEVLGSCNGLIALCNSVQELALFNPSTRKLK 123
DL+ +DFDTL+ V+ HHPL GTEV+GS NGL+ L +S + LA++N STR+ K
Sbjct: 62 WDLFTVDFDTLS--DAVEVKHHPLYAAGGTEVIGSVNGLVFLRHSERNLAVYNLSTREWK 119
Query: 124 ---TLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGD-------------- 166
+ + P + + +YGFG D + DDYK+VR+ F D
Sbjct: 120 KCFVVEIKPPRRDLITGYVYYGFGYDSVGDDYKVVRMAQFVREDEGGGGGGGYGDGGGGL 179
Query: 167 --DVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS--- 221
+ EV VYSLK + W++I +LP L+ +H L R+GYGV AG ALHW+ P+
Sbjct: 180 GCEYEVRVYSLKNDKWKKIEDLPICLKLLSKQFFHVLHRRGYGVFAGHALHWIIPQRRQL 239
Query: 222 STRSVIVAFDLVAEEFYQLPLP--DSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWM 279
R ++ FD+ ++F++LP P +S +S+ VDVG LEG LCV Y V VD+W+
Sbjct: 240 GIRDCVLGFDIRNDKFFELPQPNYESKGMSF---QVDVGVLEGNLCVMCNYEYVCVDVWV 296
Query: 280 MKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLR 339
M+E+ +KESW K+FSVQ +F+FLRPL YS++G K+LLEV EKLVW+D + +
Sbjct: 297 MREYGMKESWCKMFSVQGIKWIGAFMFLRPLIYSKDGGKVLLEVNDEKLVWYDWKNKHAK 356
Query: 340 TVKIDTHGLDFVDTEICMASLVPLSDKGGGCGGGINGMKRRN----LEEKEKRHKKKR 393
VKI G + +E+ + SLV ++D G NG K++ EEK K +KKR
Sbjct: 357 VVKI-RGGPNSYGSEMYVESLVRIND------GDRNGWKKQQEIDEEEEKRKADRKKR 407
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297809553|ref|XP_002872660.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297318497|gb|EFH48919.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 167/403 (41%), Positives = 250/403 (62%), Gaps = 28/403 (6%)
Query: 5 IPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGAH 64
IP+DI+ IF R P K+L+R R +SK C LI+ DFI+ HL+ + + + ++L+GA
Sbjct: 4 IPMDIVNDIFLRLPAKTLVRCRTLSKPCYHLINDPDFIESHLHRVLQSGDHLMILLRGAL 63
Query: 65 DLYALDFDTLTLGTGVQPHHHPLNIGSGTEVLGSCNGLIALCNSVQELALFNPSTRKLKT 124
LY +D D+L + V+ HP+ G TEV GS NGLI L NS +LA+FNPSTR++
Sbjct: 64 RLYTVDLDSLDSVSDVE---HPMKRGGPTEVFGSSNGLIGLSNSPTDLAVFNPSTRQIHR 120
Query: 125 LPLPPCLVGFPSA-----FTFYGFGQDKINDDYKLVRVLHFKGNDGDDV------EVEVY 173
LP P + P + FYGFG D ++DDYK+VR++ FK + D++ EV+V+
Sbjct: 121 LP--PSSIDLPDGSSTRGYVFYGFGYDSVSDDYKVVRMVQFKIDSDDELGCSFPYEVKVF 178
Query: 174 SLKTNSWRRISNLP-RFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS---TRSVIVA 229
SLK NSW+R+ ++ +R + + YH L+R+GYGVLAG +LHWV P+ ++IV
Sbjct: 179 SLKKNSWKRVESVSTSSIRLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVR 238
Query: 230 FDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESW 289
FDL EEF + P++V ++ +D+ L+GCLC+ Y+ YVD+WMMKE+ V+ SW
Sbjct: 239 FDLALEEFGIVRFPETVANGNVDIQMDISVLDGCLCLMCNYDQEYVDVWMMKEYNVRSSW 298
Query: 290 TKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKIDTHGLD 349
TK+F+VQ+P +SF ++RPL YS++ K+LLE+ KLVWFD+ + + T++I
Sbjct: 299 TKVFTVQKPKSVKSFAYMRPLVYSKDKDKVLLELNNTKLVWFDVVSKKMSTLRIKDCPSS 358
Query: 350 FVDTEICMASLVPLSDKGGGCGGGINGMK-RRNLEEKEKRHKK 391
+ E+ ++SLV GC G + +K R+ E KE R K
Sbjct: 359 Y-SAEVVVSSLVL------GCKGDLENIKYRKEQEAKEAREAK 394
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255583935|ref|XP_002532715.1| conserved hypothetical protein [Ricinus communis] gi|223527542|gb|EEF29664.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 186/407 (45%), Positives = 246/407 (60%), Gaps = 31/407 (7%)
Query: 4 KIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGA 63
KIP DI++ + PVK+LLRFRC+SK CSLIDS DFI HL+HS+ TRSN LIL+
Sbjct: 3 KIPDDIVSDVLLLLPVKALLRFRCLSKPLCSLIDSPDFIDHHLSHSLKTRSNLFLILRD- 61
Query: 64 HDLYALDFDTLTLGTGVQPHH-----HPLNIGSGTEVLGSCNGLIALCNSVQELALFNPS 118
+LY LDFD+L+ V P HPL G GTE +GSCNGL+AL NS ++LAL+NP+
Sbjct: 62 WNLYTLDFDSLS---SVSPAAADVLIHPLQKGGGTEAVGSCNGLLALRNSERDLALYNPA 118
Query: 119 TRKLKTLP---LPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGD------DVE 169
TRK K +P + P + + FYGFG D +++DY+L+R+ F G D + +
Sbjct: 119 TRKYKRVPVSEIEPPDRNSKTGYVFYGFGFDSVSEDYRLIRMATFVGEDDRCESFDYEYQ 178
Query: 170 VEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSV--- 226
V+VYSLK +SW+RI LP +LR Y + L R+GYGV A ALHWV P V
Sbjct: 179 VQVYSLKNDSWKRIKGLPYYLRFLYKPFFQVLHRRGYGVFACNALHWVMPHWPELGVNNS 238
Query: 227 IVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVK 286
I+AFD+V E F Q+P P+ + + N VD G LEG LC +D+W+M+E+ VK
Sbjct: 239 IIAFDIVNETFQQVPQPNWSD-NQLNFQVDAGVLEGRLCAMCNCGHECIDLWVMEEYGVK 297
Query: 287 ESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKIDTH 346
ESW KLFS + + +FLRPL YS++ K+LLEV KLVW+D S+RTVK+
Sbjct: 298 ESWIKLFSFRLSKSMSNLMFLRPLCYSKDREKMLLEVNDHKLVWYDWNKTSVRTVKVKGG 357
Query: 347 GLDFVDTEICMASLVPLSDKGGGCGGGINGMKRRNLEEKEKRHKKKR 393
F +C+ SLVPL D GG N K + +EK K + K R
Sbjct: 358 PRSF-GAAMCVGSLVPLDD------GGENEQKLK--KEKRKTNTKMR 395
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799772|ref|XP_002867770.1| hypothetical protein ARALYDRAFT_329378 [Arabidopsis lyrata subsp. lyrata] gi|297313606|gb|EFH44029.1| hypothetical protein ARALYDRAFT_329378 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 168/407 (41%), Positives = 245/407 (60%), Gaps = 34/407 (8%)
Query: 5 IPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGAH 64
IP+DIIT +F R P +L+R R +SK C SLIDS +FI+ HLN ++ + + ++L+G
Sbjct: 4 IPMDIITDLFLRLPATTLVRCRILSKPCFSLIDSPNFIESHLNQTLQSGDHLMILLRGPR 63
Query: 65 DLYALDFDTLTLGTGVQPHHHPLNIGSGTEVLGSCNGLIALCNSVQELALFNPSTRKLKT 124
L ++ D+ T V+ HPL G TEV GSCNGLI L NS ++A+FNPSTR++
Sbjct: 64 LLCTVNLDSPDKVTDVE---HPLKTGGLTEVFGSCNGLIGLSNSPTDIAIFNPSTRQIHR 120
Query: 125 LPLPPCLVGFPSA-----FTFYGFGQDKINDDYKLVRVLHFKGNDGDDV------EVEVY 173
LP V FP + FYGFG D +NDDYK+VR++ KG D++ E++V+
Sbjct: 121 LPAES--VDFPEGSTTRGYVFYGFGYDSVNDDYKVVRMVQCKGGKADELVFGFPYEIKVF 178
Query: 174 SLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS---TRSVIVAF 230
SLK NSW+RI+ + ++ + + YH L+R+GYGVLA +LHWV P+ + I+ F
Sbjct: 179 SLKKNSWKRITRVIPAIQLLFYFYYHLLYRRGYGVLASNSLHWVLPRRPGLIAFNAIIRF 238
Query: 231 DLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWT 290
DL EEF L P+ + A+ ++D+G L+GCLC+ + YVD+W+MKE+ V+ SW+
Sbjct: 239 DLDTEEFGILDFPEDL----AHENIDIGVLDGCLCLMCNHEFSYVDVWIMKEYKVEGSWS 294
Query: 291 KLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKIDTHGLDF 350
KLF V +P SF F+RPL YS+ K+LLE+ KLVWFDL++ RT++I +
Sbjct: 295 KLFRVPKPKSVESFDFMRPLLYSKERDKILLEINNAKLVWFDLKSKRFRTLRIKDCDSSY 354
Query: 351 VDTEICMASLVPLSDKGGGCGGGINGMKRRN----LEEKEKRHKKKR 393
E+ ++SLV GC G + RR E+K + + KR
Sbjct: 355 -SAELLVSSLVL------GCKGDPTEVMRRKERLAREDKIMQERNKR 394
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224089631|ref|XP_002308788.1| predicted protein [Populus trichocarpa] gi|222854764|gb|EEE92311.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 177/408 (43%), Positives = 244/408 (59%), Gaps = 28/408 (6%)
Query: 4 KIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGA 63
+IP ++I I + PVKSL+RFR +SK CSLID +FI LHLNHSITT+SN +ILK
Sbjct: 3 RIPHEVIHDILLQLPVKSLVRFRSLSKPICSLIDGPNFINLHLNHSITTKSNHSIILK-E 61
Query: 64 HDLYALDFDTLTLGTGVQPHHHPLNIGSGTEVLGSCNGLIALCNSVQELALFNPSTRKLK 123
DL+A+DFD L+ V+ HHPL G GTEV+GS NGL+ L S +A++N STR+ K
Sbjct: 62 WDLFAVDFDALS--DAVEVKHHPLYSGGGTEVIGSVNGLVFLRRSETNIAVYNLSTRECK 119
Query: 124 TLPLPPCLV---GFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGD--------DVEVEV 172
+ + + + +YGFG D DDYK+VR+ F DG + EV+V
Sbjct: 120 KCYVAETEIPRRDMTTGYVYYGFGYDSYGDDYKVVRMAQFVREDGGGDGGGLGCEYEVKV 179
Query: 173 YSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS---STRSVIVA 229
YSLK + W++I LP LR +H L R+GYGV AG ALHW+ P+ R ++
Sbjct: 180 YSLKNDKWKKIEGLPIRLRLLSKPFFHILNRRGYGVFAGHALHWIVPQRRELGIRDCVLG 239
Query: 230 FDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESW 289
FD+ ++F++LP PD N N HVDVG LEG LCV Y V VD+W+MKE+ VKESW
Sbjct: 240 FDIRDDKFFELPQPDYENKG-MNFHVDVGVLEGNLCVMCNYEHVCVDVWVMKEYGVKESW 298
Query: 290 TKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKIDTHGLD 349
K+FSV +F+FLRPL YS+ G +LLEV EKL+W+D + + V++ G
Sbjct: 299 CKMFSVHAIKWISAFMFLRPLVYSKGGDMVLLEVNGEKLLWYDWKNKHAKVVRVRG-GPS 357
Query: 350 FVDTEICMASLVPLSDKGGGCGGGINGMKRRNLE----EKEKRHKKKR 393
+E+ + SL+ ++D G I K++ L+ EK K ++ KR
Sbjct: 358 SFGSEMYVESLIRIND-----GDRIGWKKQQELDEEEEEKRKTNRNKR 400
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053103|ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|222844963|gb|EEE82510.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 173/402 (43%), Positives = 230/402 (57%), Gaps = 28/402 (6%)
Query: 8 DIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGAHDLY 67
+I I R PVKSL RFRCVSK+ C IDS FI HL S ++ LIL+ A +L
Sbjct: 6 EITADILSRLPVKSLKRFRCVSKSWCKEIDSPYFINTHLKRSSQAHTHLNLILRDATNLC 65
Query: 68 ALDFDTLTLGTGVQPHHHPLNIGS-GTEVLGSCNGLIALCNSVQELALFNPSTRKLKTLP 126
+D D+ T ++ ++PL TEV+GSCNGL+AL NS +AL+NPSTR+ K +P
Sbjct: 66 TVDLDSPDF-TSIELKNNPLKSDDCATEVMGSCNGLLALLNSDFSIALYNPSTREKKMIP 124
Query: 127 LPPCLV-------GFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGD---DVEVEVYSLK 176
+ P + S F FYGFG D IN+DYK+VR +HF G+ D EV+VYSLK
Sbjct: 125 VSPLELPNDLDDSKVSSLFNFYGFGHDPINEDYKVVRFIHFYGDSPDGFFHCEVKVYSLK 184
Query: 177 TNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSP-----KSSTRSVIVAFD 231
+NSW+RI + P LR YH R+GYGV A A+HW + K + +IVAFD
Sbjct: 185 SNSWKRIDDYPYDLRFILPPDYHPRCRRGYGVFANSAVHWKATVVGKGKENGSDLIVAFD 244
Query: 232 LVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTK 291
L AEEF +P PD S ++VG L GCLCVF N V++W+MKE+ VKESWT
Sbjct: 245 LGAEEFKIIPQPD---YSSNEHEMNVGVLGGCLCVFCNKNCKQVEIWVMKEYGVKESWTH 301
Query: 292 LFSVQEPTPTRSF-LFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKIDTHGLDF 350
L +V ++F L RPL YS+ G K+LLE+ VW+DL + ++I F
Sbjct: 302 LCTVIAQLQVKAFWLHARPLAYSKGGDKILLELDNRFFVWYDLRRRKSKIIRIRGAPPIF 361
Query: 351 VDTEICMASLVPLSDKGGGCGGGINGMKRRNLEEKEKRHKKK 392
+ EIC+ SLV L+ GGG ++ +EK K KK+
Sbjct: 362 I-AEICVGSLVTLN------GGGEGQTSGKDTQEKRKTRKKR 396
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255583943|ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 164/401 (40%), Positives = 233/401 (58%), Gaps = 39/401 (9%)
Query: 5 IPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGAH 64
+PL++I I CR K LL RCVSK +LIDS FI LHLNHSI + N +ILK +
Sbjct: 4 LPLEMIAEILCRLTAKKLLCCRCVSKRWRTLIDSPTFIYLHLNHSIESPCNLSIILKSS- 62
Query: 65 DLYALDFDTLTLGTGVQPHHHPLNI-GSGTEVLGSCNGLIALCNSVQELALFNPSTRKLK 123
+LY+L FD L +QP HPL G ++LGSCNGL+ +CN V ++AL+NPS R +
Sbjct: 63 ELYSLSFDLL---DNIQPLDHPLMCYNHGVKILGSCNGLLCICNIVDDIALWNPSIRAHR 119
Query: 124 TLPLPPCLV----GFPSA-FTFYGFGQDKINDDYKLVRVLHFKGNDGD--DVEVEVYSLK 176
+P P + G S + +GFG D NDDYKLVR+ F G D + EV+V+SL+
Sbjct: 120 VVPYLPVELKRYFGMCSCRVSVFGFGYDLSNDDYKLVRIAQFGGVDRKSFESEVKVFSLR 179
Query: 177 TNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWV---SPKSSTRSVIVAFDLV 233
NSWRRI+++P Y L+ G+ A GALHW+ P S+ IVA DL
Sbjct: 180 KNSWRRIADMP----------YCVLYPGENGIYANGALHWLVSQDPDSTVADTIVALDLG 229
Query: 234 AEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLF 293
E+++ +P P+ V++ N ++ VG L+GCL + + VD+W+M+E+ VKESW+KLF
Sbjct: 230 VEDYHVVPKPEFVDM---NCNMGVGVLQGCLSLLAYARSERVDVWVMEEYMVKESWSKLF 286
Query: 294 SVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKIDTHGLDFVDT 353
SV L+PL YS++G ++L+E L W+DL+ + V I + F +
Sbjct: 287 SVARLEVIGILRSLKPLAYSKSGNEVLIEHDNVNLFWYDLKRKEVVNVWIQGVPITF-EA 345
Query: 354 EICMASLVPLSDKGGGCGGGINGMKRR-NLEEKEKRHKKKR 393
EIC+ SLVPL+ N ++RR E KE +++KKR
Sbjct: 346 EICVGSLVPLN---------ANRLRRRPKHEHKETKNRKKR 377
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 393 | ||||||
| TAIR|locus:2135615 | 413 | CPR1 "AT4G12560" [Arabidopsis | 0.893 | 0.849 | 0.431 | 3.8e-78 | |
| TAIR|locus:2127465 | 402 | AT4G22390 "AT4G22390" [Arabido | 0.880 | 0.860 | 0.378 | 3e-62 | |
| TAIR|locus:2082410 | 427 | AT3G06240 "AT3G06240" [Arabido | 0.572 | 0.526 | 0.365 | 1.8e-44 | |
| TAIR|locus:2076196 | 364 | AT3G23880 "AT3G23880" [Arabido | 0.768 | 0.829 | 0.291 | 4e-26 | |
| TAIR|locus:2077452 | 417 | AT3G07870 "AT3G07870" [Arabido | 0.712 | 0.671 | 0.278 | 5.6e-21 | |
| TAIR|locus:2058480 | 436 | AT2G40920 "AT2G40920" [Arabido | 0.821 | 0.740 | 0.276 | 4.8e-17 | |
| TAIR|locus:2119787 | 411 | AT4G19940 "AT4G19940" [Arabido | 0.837 | 0.800 | 0.261 | 5.7e-15 | |
| TAIR|locus:2058470 | 449 | AT2G40910 "AT2G40910" [Arabido | 0.832 | 0.728 | 0.25 | 1.3e-14 | |
| TAIR|locus:504955955 | 403 | AT2G40925 "AT2G40925" [Arabido | 0.829 | 0.808 | 0.259 | 1.6e-14 | |
| TAIR|locus:2032308 | 392 | AT1G71320 [Arabidopsis thalian | 0.356 | 0.357 | 0.290 | 4.8e-14 |
| TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 160/371 (43%), Positives = 240/371 (64%)
Query: 5 IPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGAH 64
IP+DI+ IF R P K+L+R R +SK C LI+ DFI+ HL+ + T + ++L+GA
Sbjct: 4 IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGAL 63
Query: 65 DLYALDFDTLTLGTGVQPHHHPLNIGSGTEVLGSCNGLIALCNSVQELALFNPSTRKLKT 124
LY++D D+L + V+ HP+ G TEV GS NGLI L NS +LA+FNPSTR++
Sbjct: 64 RLYSVDLDSLDSVSDVE---HPMKRGGPTEVFGSSNGLIGLSNSPTDLAVFNPSTRQIHR 120
Query: 125 LPLPPCLVGFPSA-----FTFYGFGQDKINDDYKLVRVLHFKGNDGDDV------EVEVY 173
LP P + P + FYG G D ++DDYK+VR++ FK + D++ EV+V+
Sbjct: 121 LP--PSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVF 178
Query: 174 SLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS---TRSVIVAF 230
SLK NSW+RI ++ ++ + + YH L+R+GYGVLAG +LHWV P+ ++IV F
Sbjct: 179 SLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRF 238
Query: 231 DLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWT 290
DL EEF + P++V ++ +D+G L+GCLC+ Y+ YVD+WMMKE+ V++SWT
Sbjct: 239 DLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWT 298
Query: 291 KLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKIDTHGLDF 350
K+F+VQ+P +SF ++RPL YS++ K+LLE+ KLVWFDLE+ + T++I +
Sbjct: 299 KVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTLRIKDCPSSY 358
Query: 351 VDTEICMASLV 361
E+ ++SLV
Sbjct: 359 -SAELVVSSLV 368
|
|
| TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 140/370 (37%), Positives = 212/370 (57%)
Query: 6 PLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGAHD 65
P D+I +F R +L++ R +SK C SLIDS +F+ HL + T + ++L+G
Sbjct: 5 PTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILLRGPRL 64
Query: 66 LYALDFDTLTLGTGVQPHHHPLNIGSGTEVLGSCNGLIALCNSVQELALFNPSTRKLKTL 125
L ++ D+ V HPL G TEV GS NG+I LCNS +LA+FNPSTRK+ L
Sbjct: 65 LRTVELDS---PENVSDIPHPLQAGGFTEVFGSFNGVIGLCNSPVDLAIFNPSTRKIHRL 121
Query: 126 PLPPCLVGFPSA-----FTFYGFGQDKINDDYKLVRVLHFKGNDGDD-----VEVEVYSL 175
P+ P + FP + FYG G D + DD+K+VR++ K +G VEV+V+SL
Sbjct: 122 PIEP--IDFPERDITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPVEVKVFSL 179
Query: 176 KTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS---TRSVIVAFDL 232
K NSW+R+ + F + Y YH L R+GYGV+ LHW+ P+ + I+ +DL
Sbjct: 180 KKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNAIIKYDL 239
Query: 233 VAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKL 292
+++ L P + Y ++D+G L+GC+C+ + +VD+W++KE+ +SWTKL
Sbjct: 240 ASDDIGVLSFPQEL---YIEDNMDIGVLDGCVCLMCYDEYSHVDVWVLKEYEDYKSWTKL 296
Query: 293 FSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRRE-KLVWFDLETNSLRTVKIDTHGLDFV 351
+ V +P S F+RPL S++ K+LLE+ L+WFDLE+ SL T I+ F
Sbjct: 297 YRVPKPESVESVEFIRPLICSKDRSKILLEINNAANLMWFDLESQSLTTAGIECDS-SFT 355
Query: 352 DTEICMASLV 361
+I ++SLV
Sbjct: 356 -ADILVSSLV 364
|
|
| TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 91/249 (36%), Positives = 138/249 (55%)
Query: 94 EVLGSCNGLIALCNSVQELALFNPSTRKLKTLP--LPPCLVGFP-SAFTFYGFGQDKIND 150
E++GS NGL+ + + L+NP+T K LP P V + F YGFG D + D
Sbjct: 164 EIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTD 223
Query: 151 DYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA 210
DYKLV+++ D ++ VYSLK +SWRRI NL + D Y S GV
Sbjct: 224 DYKLVKLV---ATSEDILDASVYSLKADSWRRICNLNY---EHNDGSYTS------GVHF 271
Query: 211 GGALHWVSPKSS-TRSVIVAFDLVAEEFYQLPLPDSV-NVSYANVHVDVGSLEGCLCVFR 268
GA+HWV +S + V+VAFD+ EEF ++P+PD + S+ + VGSL G LCV
Sbjct: 272 NGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVN 331
Query: 269 FYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKL 328
V+ D+W+M E+ +SW++ ++ RS ++PL ++N ++LLE+ + L
Sbjct: 332 SCYDVHDDIWVMSEYGEAKSWSR---IRINLLYRS---MKPLCSTKNDEEVLLELDGD-L 384
Query: 329 VWFDLETNS 337
V ++ ETN+
Sbjct: 385 VLYNFETNA 393
|
|
| TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 96/329 (29%), Positives = 154/329 (46%)
Query: 5 IPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLH---LNHSITTRSNRR---L 58
+PL+++ I R PVKSL RF+CV + SLI F H L S T S + +
Sbjct: 14 LPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGV 73
Query: 59 ILKGAHDLYALDFDTLTLGTGVQPHHHPLNI-GSGT-EVLGSCNGLIAL-CNSVQELALF 115
I + L + +L + V H + G +V+G+C+GL+ + + L L+
Sbjct: 74 ITTSRYHLKSCCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVCFHVDYDKSLYLW 133
Query: 116 NPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSL 175
NP+ + + L YGFG D+ DDYK+V +L + +E ++YS
Sbjct: 134 NPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQRHQV--KIETKIYST 191
Query: 176 KTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAE 235
+ WR ++ P + + R G + G L+W + SS+ I+++D+ +
Sbjct: 192 RQKLWRSNTSFPSGV------VVADKSRSG--IYINGTLNWAATSSSSSWTIISYDMSRD 243
Query: 236 EFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSV 295
EF +LP P V + +G L GCL + + D+W+MKE SW+KL S+
Sbjct: 244 EFKELPGP--VCCGRGCFTMTLGDLRGCLSMVCYCKGANADVWVMKEFGEVYSWSKLLSI 301
Query: 296 QEPTPTRSFLFLRPLGYSRNGVKLLLEVR 324
T F+RPL S +G+ +LLE R
Sbjct: 302 PGLTD-----FVRPLWIS-DGLVVLLEFR 324
|
|
| TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 260 (96.6 bits), Expect = 5.6e-21, P = 5.6e-21
Identities = 88/316 (27%), Positives = 153/316 (48%)
Query: 3 KKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKG 62
+ +P DII IF R P+ S+ R V ++ S++ L+ S ++ + L+L
Sbjct: 26 ESLPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHG----RLSSSSSSPTKPCLLLHC 81
Query: 63 AHDLY-ALDF-DTLTLGTGVQPHHHPLNIGSGT---EVLGSCNGLIALCNSV--QELALF 115
+ L F D ++ L S +V+GSCNGL+ L +S+ L L+
Sbjct: 82 DSPIRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSLYLY 141
Query: 116 NPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKG----NDG------ 165
NP T +L LP C + +GFG ++ +YK++++++F+G N+G
Sbjct: 142 NPFTTN--SLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRG 199
Query: 166 ----DDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVS-PK 220
EV++ +L + + + + + Y ++ ++ L G LH+V+ P+
Sbjct: 200 RIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFV-----KRSSEALVNGRLHFVTRPR 254
Query: 221 SSTRS-VIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWM 279
V+FDL EEF ++P PD ++ N H V +L+GCLC + N +D+W+
Sbjct: 255 RHVPDRKFVSFDLEDEEFKEIPKPDCGGLNRTN-HRLV-NLKGCLCAVVYGNYGKLDIWV 312
Query: 280 MKEHAVKESWTKLFSV 295
MK + VKESW K +S+
Sbjct: 313 MKTYGVKESWGKEYSI 328
|
|
| TAIR|locus:2058480 AT2G40920 "AT2G40920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 231 (86.4 bits), Expect = 4.8e-17, P = 4.8e-17
Identities = 101/365 (27%), Positives = 174/365 (47%)
Query: 7 LDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLI--LK--G 62
LD + I R P+ SL RF+CVSK SLI S+ F +L ++ TR RL LK G
Sbjct: 56 LDHVMEILMRFPLTSLTRFKCVSKQWSSLISSRYFC--NLLYTTVTRQQPRLYMCLKDDG 113
Query: 63 AHDLYALDFDTLTLG-TGVQPHHHPLNI-GSGTEVLGSCNGLIALCNSVQELA-LFNPST 119
H + L + + G T L+I G G L GL +C S ++ A ++NPST
Sbjct: 114 GHRVL-LSISSPSRGNTSFVVVEQDLSIPGMGGFFLNVVRGL--MCFSRRKKARIYNPST 170
Query: 120 RKLKTLP-LPPCLV---GFPSAFTFYGFGQDKINDDYKLVRVLHFKG---NDGD-DVEVE 171
++L TLP + +V G Y G D ++D YKLV + G+ E
Sbjct: 171 KQLLTLPAIKSDIVAQQGQTKHHPRYYIGHDPVSDQYKLVCTVAISSLLPRLGNLKSEHW 230
Query: 172 VYSLKTN-SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAF 230
V++L+ SW+++ L +Y +H+ +G +G + +++ + V+V+F
Sbjct: 231 VFALEAGGSWKKVVPLE-------NYRHHAPSTEGRST-SGSVVRYMAWPDNYNCVVVSF 282
Query: 231 DLVAEEFYQLPLPDSVN----VSYANVHVDVGSLEGCLCVFRFYNLV---YVDMWMMKEH 283
D+ +E+ +P+P ++ V + D+ G + +F NL D+W++++
Sbjct: 283 DIRSEQLTIIPVPREIHLDEVVPAVTMMADLIEYGGKIAIFYHTNLKDEGSADLWVLEDT 342
Query: 284 AVKESWTKLFSVQEPTPTRSF--LFLRPLGYSRNGVKLLLEVR---REKLVWFDLETNSL 338
K W+K V +P + L G +++G +L V R +++++L++N L
Sbjct: 343 G-KSEWSKKTLVLQPCQRHLVEDIELIVKGTTQDGKVILAPVEMHSRFYILYYNLQSNDL 401
Query: 339 RTVKI 343
R V+I
Sbjct: 402 RKVEI 406
|
|
| TAIR|locus:2119787 AT4G19940 "AT4G19940" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 213 (80.0 bits), Expect = 5.7e-15, P = 5.7e-15
Identities = 95/363 (26%), Positives = 161/363 (44%)
Query: 4 KIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILK-G 62
+IP D++ I R P KSL+RF+ VSK SLI S++F L S R L
Sbjct: 34 EIPFDLVIEILTRLPAKSLMRFKSVSKLWSSLICSRNFTNRLLKLSSPPRLFMCLSSSDN 93
Query: 63 AH---DLYAL----DFDTLTLGTGVQPHHHPLNIGSGTEVLGSCNGLIALCNSVQELALF 115
+H L +L D D +T+ + V + G ++ GL+ L ++
Sbjct: 94 SHLKTVLLSLSSPPDSD-ITMSSSVIDQDLTMPGMKGYQISHVFRGLMCLVKK-SSAQIY 151
Query: 116 NPSTRKLKTLP-LPPCLV---GFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVE 171
N +TR+L LP + + S Y G D + D YK+V ++ + +D EVE
Sbjct: 152 NTTTRQLVVLPDIEESTILAEEHKSKKIMYHIGHDPVYDQYKVVCIVS-RASD----EVE 206
Query: 172 VYSLKTNSWRRI---SNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVS-PKSSTRSVI 227
Y+ + W + R+ + Y H G G+ G +H+++ + S V+
Sbjct: 207 EYTFLSEHWVLLLEGEGSRRWRKISCKYPPHVPL--GQGLTLSGRMHYLAWVRVSDNRVL 264
Query: 228 VAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKE 287
V FD +EEF L +P + Y N ++ G L + +++W++++ K
Sbjct: 265 VIFDTHSEEFSMLQVPGDIFWKY-NGLLEYGGKIAILNYTKVDIEGVMELWVVEDEE-KN 322
Query: 288 SWTKLFSVQEPTPTR---SFLFLRPLGYSRNGVKLLLEVRREKLVW----FDLETNSLRT 340
W+ V P + S + L LG +RNG +L+ +K V+ +DL+ N +R
Sbjct: 323 LWSSKILVVNPLQLQMVNSIISLTVLGTTRNGEVILVPGPEDKTVFNILLYDLQKNHIRK 382
Query: 341 VKI 343
++I
Sbjct: 383 IEI 385
|
|
| TAIR|locus:2058470 AT2G40910 "AT2G40910" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 91/364 (25%), Positives = 170/364 (46%)
Query: 4 KIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRL---IL 60
+IP D++ I R P KS++RF+C+SK SLI + F L S+T + + ++
Sbjct: 68 EIPPDLLMEIVMRLPAKSMVRFKCISKQWSSLISCRYFCN-SLFTSVTRKKQPHIHMCLV 126
Query: 61 KGAHDLYALDFDTLTLGTGVQPHHHPLNI-GSGTEVLGSCNGLIALCNSVQELA-LFNPS 118
L + + L++ G G L GL LC SV+E A ++NP+
Sbjct: 127 DHGGQRVLLSLSSTSPDNTCYVVDQDLSLTGMGGFFLNLVRGL--LCFSVREKACIYNPT 184
Query: 119 TRKLKTLP-LPPCLVGFPSA---FTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVE--V 172
TR+ TLP + ++ +Y G D +ND YKLV + +++ E V
Sbjct: 185 TRQRLTLPAIKSDIIALKDERKDIRYY-IGHDPVNDQYKLVCTIGISSAFFTNLKSEHWV 243
Query: 173 YSLKTN-SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFD 231
+ L+ SWR++ R L ++ H+ G + G +++++ +V+FD
Sbjct: 244 FVLEAGGSWRKV----RTLESYHP---HAPSTVGQ-FINGSVVYYMAWLDMDTCAVVSFD 295
Query: 232 LVAEEFYQLPLP-DSVNVSYANVHVDVGSLE--GCLCVFRFYNL---VYVDMWMMKEHAV 285
+ +EE + + ++ +V+ + G ++ G + VF +L VD+W++K+ +
Sbjct: 296 ITSEELTTIIVTLEAGDVALPAGRMKAGLIQYHGEIAVFDHTHLKEKFLVDLWVLKDAGM 355
Query: 286 KESWTKLFSVQEPTP---TRSFLFLRPLGYSRNGVKLLLEVR---REKLVWFDLETNSLR 339
K+ W+K V +P + L G +++G +L V + ++ +D+ +N LR
Sbjct: 356 KK-WSKKRLVLQPCQKHLVHDDIELVVKGTTQDGKVILAPVNMCSQLYILCYDMGSNDLR 414
Query: 340 TVKI 343
V+I
Sbjct: 415 KVEI 418
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| TAIR|locus:504955955 AT2G40925 "AT2G40925" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 209 (78.6 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 94/362 (25%), Positives = 168/362 (46%)
Query: 4 KIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGA 63
+IP D++ I R P KS +RF+CVSK LI + F L +T + ++ L
Sbjct: 26 EIPPDLMIEILIRLPTKSFMRFKCVSKQWSPLISGRYFCN-RLFTCVTRQQQQQPRLYMC 84
Query: 64 HDLYALDFDTLTLGTGVQPHHHPLNIGSGTEVLG----SCNGLIALCNSVQELA-LFNPS 118
L A D + L + + + + + G S GL LC A ++NPS
Sbjct: 85 --LVAKDKQCVLLSSTSPDNTCFVLVDQDLSIPGYFFASVPGL--LCFQFGTKACIYNPS 140
Query: 119 TRKLKTLPLPPCLVGFPSA---FTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVE--VY 173
T++L TLP + T Y G+D +ND YKLV + ++ E V+
Sbjct: 141 TKQLLTLPSVKSDITAQQGQLKTTQYYIGRDPVNDQYKLVCTILIYSKLFANMSSEHWVF 200
Query: 174 SLKTN-SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDL 232
+L+ SW+++ +P L +++ H+ G + G +H+++ + +V+F++
Sbjct: 201 TLELGGSWKKV--VP--LGNYHP---HAPATAGRSI--DGVVHYLAWVDLYKCAVVSFNI 251
Query: 233 VAEEFYQLPLPDS---VNVSYANVHVDVGSLEGCLCVFRFYNLV---YVDMWMMKEHAVK 286
+EE LP V V + D+ +G L +F L V++W++K+ A K
Sbjct: 252 RSEEVTTFLLPRKIWDVPVPALMMKADLIEYDGKLAIFSHSYLKDEGLVELWVLKDAAGK 311
Query: 287 ESWTKLFSVQEPTPTRSF--LFLRPLGYSRNGVKLL--LEVRRE-KLVWFDLETNSLRTV 341
+ W+ + V +P + L G +++G +L LE+R + ++ +D++ N LR V
Sbjct: 312 KKWSNMILVLQPCQRHLVHGIDLIVKGTTQDGKVILSPLEMRSQFYILCYDVQNNDLRKV 371
Query: 342 KI 343
+I
Sbjct: 372 EI 373
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| TAIR|locus:2032308 AT1G71320 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 142 (55.0 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 47/162 (29%), Positives = 82/162 (50%)
Query: 142 GFGQDKINDDYKLVRVL-HFKGNDGDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHS 200
GFG+D + YK+V + ++ +D + + +V SL R + FYD ++H
Sbjct: 191 GFGKDIVKKSYKVVLIYTRYEIHD-HEFKAKVLSLDNGEQRDVG--------FYD-IHHC 240
Query: 201 LF-RKGYGVLAGGALHWVSPK--SSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDV 257
+F + V A G+L W++ K S T ++A DL EEF + LP+ + YA ++++
Sbjct: 241 IFCDEQTSVYANGSLFWLTLKKLSQTSYQLLAIDLHTEEFRWILLPEC-DTKYAT-NIEM 298
Query: 258 GSLEGCLC---VFRFYNLVYVDMWMMKEHAVKESWTKLFSVQ 296
+L LC V NLV +W + + E W K++S++
Sbjct: 299 WNLNERLCLSDVLESSNLV---VWSLHQEYPTEKWEKIYSIK 337
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SU30 | CPR30_ARATH | No assigned EC number | 0.4228 | 0.9541 | 0.9079 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT4G12560 | F-box family protein; F-box family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Cyclin-like F-box (InterPro-IPR001810), F-box associated (InterPro-IPR006527), F-box associated type 1 (InterPro-IPR017451); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G22390.1); Has 1046 Blast hits to 1041 proteins in 43 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1044; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (413 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | AT1G43720 | unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (314 aa) | • | 0.790 | |||||||
 | LCR46 | LCR46 (Low-molecular-weight cysteine-rich 46); Encodes a member of a family of small,secreted, [...] (91 aa) | • | 0.788 | |||||||
 | AT1G15680 | F-box family protein; F-box family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED [...] (410 aa) | • | 0.788 | |||||||
 | AT1G09320 | agenet domain-containing protein; agenet domain-containing protein; FUNCTIONS IN- RNA binding; [...] (517 aa) | • | 0.599 | |||||||
 | AT5G36125 | transposable element gene; copia-like retrotransposon family, has a 0. P-value blast match to G [...] (1291 aa) | • | 0.562 | |||||||
 | AT4G08100 | transposable element gene; gypsy-like retrotransposon family, has a 1.2e-123 P-value blast matc [...] (1289 aa) | • | 0.562 | |||||||
 | AT4G07850 | transposable element gene; gypsy-like retrotransposon family, has a 3.2e-135 P-value blast matc [...] (1358 aa) | • | 0.562 | |||||||
 | AT4G07500 | transposable element gene; similar to unknown protein [Arabidopsis thaliana] (TAIR-AT2G09865.1) [...] (239 aa) | • | 0.562 | |||||||
 | AT4G04410 | transposable element gene; copia-like retrotransposon family, has a 1.7e-176 P-value blast matc [...] (1354 aa) | • | 0.562 | |||||||
 | AT4G04380 | transposable element gene; copia-like retrotransposon family, has a 7.5e-248 P-value blast matc [...] (1163 aa) | • | 0.562 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 393 | |||
| TIGR01640 | 230 | TIGR01640, F_box_assoc_1, F-box protein interactio | 2e-25 | |
| pfam00646 | 48 | pfam00646, F-box, F-box domain | 3e-05 | |
| smart00256 | 41 | smart00256, FBOX, A Receptor for Ubiquitination Ta | 6e-05 | |
| pfam07734 | 159 | pfam07734, FBA_1, F-box associated | 0.003 |
| >gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-25
Identities = 65/249 (26%), Positives = 111/249 (44%), Gaps = 27/249 (10%)
Query: 96 LGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLV 155
+ C+GLI + + L ++NPST + + LP P Y G D I YK++
Sbjct: 1 VVPCDGLIC-FSYGKRLVVWNPSTGQSRWLPTPKSRRSNK-ESDTYFLGYDPIEKQYKVL 58
Query: 156 RVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALH 215
GN E +VY+L +NSWR I +H L + GV G L+
Sbjct: 59 CFSDRSGNRNQS-EHQVYTLGSNSWRTIEC---------SPPHHPLKSR--GVCINGVLY 106
Query: 216 WV--SPKSSTRSVIVAFDLVAEEFY---QLPLPDSVNVSYANVHVDVGSLEGCLCVFRFY 270
++ + K++ IV+FD+ +E F LP +S +V Y + + + +G L V +
Sbjct: 107 YLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDY----LSLINYKGKLAVLKQK 162
Query: 271 NLVY-VDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLL-EVRREKL 328
D+W++ + A K+ W+KLF+V P G++ G +L E
Sbjct: 163 KDTNNFDLWVLND-AGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFY 221
Query: 329 VW-FDLETN 336
++ +++ N
Sbjct: 222 IFYYNVGEN 230
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This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230 |
| >gnl|CDD|201368 pfam00646, F-box, F-box domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 3e-05
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 4 KIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLN 47
+P D++ I R K LLR VSK SL+DS K L
Sbjct: 5 DLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48
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This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48 |
| >gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 6e-05
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 5 IPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLH 45
+P +I+ I + K LLR R VS+ SLIDS DF
Sbjct: 1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41
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Length = 41 |
| >gnl|CDD|219544 pfam07734, FBA_1, F-box associated | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.003
Identities = 36/163 (22%), Positives = 60/163 (36%), Gaps = 27/163 (16%)
Query: 212 GALHWVSPKSSTRS--VIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVDVGSL----EGCL 264
G +W++ + T +++FD E F LPLP + + +D SL E L
Sbjct: 6 GNTYWLASEKETNEEDFLLSFDFTTERFGPRLPLP------FQSPDLDTVSLSVVREEKL 59
Query: 265 CVFRFYNLVY-VDMWMMK---EHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLL 320
V + +++W+ +AV SW+K +V P F + + K +
Sbjct: 60 AVLLQCDDTSKIEIWVTTKIEPNAV--SWSKFLTVDMPPLPGLFFHFCAGSFFIDEEKKV 117
Query: 321 LEVRREKLVWFDLETNSLRTVKIDTHGLDFVDTEICMASLVPL 363
V D +T I G D E+ + PL
Sbjct: 118 -------AVVCDKDTEKKTN-TIYIIGEDGYFKEVDSSYCDPL 152
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Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination. Length = 159 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 393 | |||
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 100.0 | |
| PF07734 | 164 | FBA_1: F-box associated; InterPro: IPR006527 This | 99.73 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 99.67 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 99.58 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 99.43 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 99.38 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 99.3 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 99.25 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 99.24 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.22 | |
| PLN02153 | 341 | epithiospecifier protein | 99.16 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 99.07 | |
| PLN02193 | 470 | nitrile-specifier protein | 99.05 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 99.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 98.98 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 98.94 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 98.93 | |
| PLN02153 | 341 | epithiospecifier protein | 98.89 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 98.82 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 98.75 | |
| PLN02193 | 470 | nitrile-specifier protein | 98.72 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 98.64 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 98.61 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 98.46 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 98.34 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 98.26 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 98.06 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 97.93 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 97.52 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 97.43 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 97.42 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.27 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 96.93 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 96.53 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 96.34 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.16 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 95.73 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 95.55 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 95.52 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 94.72 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 94.23 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 94.0 | |
| smart00612 | 47 | Kelch Kelch domain. | 93.96 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 93.84 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 93.81 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 93.51 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 92.77 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 92.71 | |
| PF07762 | 131 | DUF1618: Protein of unknown function (DUF1618); In | 92.42 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 91.73 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 91.6 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 91.47 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 90.08 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 89.66 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 89.54 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 88.81 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 88.65 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 88.62 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 88.46 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 87.87 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 87.81 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 87.81 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 87.71 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 87.56 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 87.53 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 87.48 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 87.44 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 86.85 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 86.48 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 86.26 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 85.67 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 85.39 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 85.37 | |
| PLN02772 | 398 | guanylate kinase | 84.52 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 83.37 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 82.55 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 82.52 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 81.91 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 81.58 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 81.16 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 81.13 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 80.8 | |
| smart00612 | 47 | Kelch Kelch domain. | 80.3 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 80.14 |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=263.57 Aligned_cols=224 Identities=27% Similarity=0.427 Sum_probs=163.6
Q ss_pred eeeeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEe
Q 046902 96 LGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSL 175 (393)
Q Consensus 96 ~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss 175 (393)
+++||||||+... ..++||||+||+++.||+++...... ....++||||+.+++||||++...... .....++||++
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~-~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~ 77 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNK-ESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTL 77 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCccccc-ccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEe
Confidence 4799999998864 78999999999999999876210111 122689999999999999999864321 24568999999
Q ss_pred CCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCC-CC-cEEEEEECCCceee-eecCCCcccccCCc
Q 046902 176 KTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS-TR-SVIVAFDLVAEEFY-QLPLPDSVNVSYAN 252 (393)
Q Consensus 176 ~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~-~~-~~il~fD~~~e~~~-~i~lP~~~~~~~~~ 252 (393)
++++||.+...+. ... ....+|++||++||++.... .. ..|++||+.+|+|+ .+++|.... ...
T Consensus 78 ~~~~Wr~~~~~~~----------~~~-~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~--~~~ 144 (230)
T TIGR01640 78 GSNSWRTIECSPP----------HHP-LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNS--DSV 144 (230)
T ss_pred CCCCccccccCCC----------Ccc-ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccc--ccc
Confidence 9999999874331 111 22238999999999986522 22 37999999999999 589997643 122
Q ss_pred eeEEEEEeCCeEEEEEEcCC-CeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc--CcEEE
Q 046902 253 VHVDVGSLEGCLCVFRFYNL-VYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR--REKLV 329 (393)
Q Consensus 253 ~~~~l~~~~G~L~~~~~~~~-~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~--~~~l~ 329 (393)
....|++++|+||++..... ..++||+|++++. ..|+|.++|+............|+++..+|++++...+ ...++
T Consensus 145 ~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~ 223 (230)
T TIGR01640 145 DYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIF 223 (230)
T ss_pred cceEEEEECCEEEEEEecCCCCcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEE
Confidence 24689999999999987643 4799999998874 55999999986432222122558888888654444432 22399
Q ss_pred EEECCCC
Q 046902 330 WFDLETN 336 (393)
Q Consensus 330 ~yd~~t~ 336 (393)
+||++++
T Consensus 224 ~y~~~~~ 230 (230)
T TIGR01640 224 YYNVGEN 230 (230)
T ss_pred EEeccCC
Confidence 9999986
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This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-16 Score=129.82 Aligned_cols=150 Identities=29% Similarity=0.505 Sum_probs=99.8
Q ss_pred eeEeCceEEEeccCCCCCc--EEEEEECCCcee-eeecCCCcccccCCceeEEEEE-eCCeEEEEEEcCC-CeEEEEEEe
Q 046902 207 GVLAGGALHWVSPKSSTRS--VIVAFDLVAEEF-YQLPLPDSVNVSYANVHVDVGS-LEGCLCVFRFYNL-VYVDMWMMK 281 (393)
Q Consensus 207 ~v~~~G~lyw~~~~~~~~~--~il~fD~~~e~~-~~i~lP~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~-~~~~iW~l~ 281 (393)
+|++||++||++....... .|++||+++|+| ..+++|.... .......|++ .+|+||++..... ..++||+|+
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~--~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~ 78 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCND--DDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMK 78 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccC--ccCCEEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence 5899999999998633322 799999999999 8899998764 1233457754 4789999975433 379999999
Q ss_pred ecCC-CCCeEEEEEeeCCCCCCCcce-eeEEEEEeCCcEEEEEEc-C------cEEEEEECCCCcEEEEEEecCCCCeee
Q 046902 282 EHAV-KESWTKLFSVQEPTPTRSFLF-LRPLGYSRNGVKLLLEVR-R------EKLVWFDLETNSLRTVKIDTHGLDFVD 352 (393)
Q Consensus 282 ~~~~-~~~W~~~~~i~~~~~~~~~~~-~~~~~~~~~g~~i~l~~~-~------~~l~~yd~~t~~~~~v~~~~~~~~~~~ 352 (393)
+++. .++|+|.++|+.......... ..+..+..+++.+++..+ . ..++.|+ +++..+++.+.....-...
T Consensus 79 ~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~~~ 157 (164)
T PF07734_consen 79 KYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCWPS 157 (164)
T ss_pred eeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCCCC
Confidence 7653 689999999997543322111 122222333334555432 1 3477887 7778888866211112666
Q ss_pred eEEEEec
Q 046902 353 TEICMAS 359 (393)
Q Consensus 353 ~~~y~~S 359 (393)
++.|+||
T Consensus 158 ~~~YvpS 164 (164)
T PF07734_consen 158 ICNYVPS 164 (164)
T ss_pred EEEECCC
Confidence 7799987
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=121.73 Aligned_cols=112 Identities=22% Similarity=0.422 Sum_probs=84.7
Q ss_pred eeEeCceEEEeccC-CCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCC---eEEEEEEee
Q 046902 207 GVLAGGALHWVSPK-SSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLV---YVDMWMMKE 282 (393)
Q Consensus 207 ~v~~~G~lyw~~~~-~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~---~~~iW~l~~ 282 (393)
|+++||.+||++.. ......|++||+.+|+|+.+++|.... .......|.+++|+|+++...... .++||+|+|
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~--~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD 78 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPY--SSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED 78 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeec--cccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence 58999999999876 445689999999999999999992221 233356999999999999876543 599999999
Q ss_pred cCCCCCeEEEEEeeCCCCCCC--cceeeEEEEEeCCcEEEE
Q 046902 283 HAVKESWTKLFSVQEPTPTRS--FLFLRPLGYSRNGVKLLL 321 (393)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~~~~--~~~~~~~~~~~~g~~i~l 321 (393)
++ +++|++++.+-+...... .....+.++..+|++|+.
T Consensus 79 ~~-k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 79 YE-KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred cc-cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 87 588998876544322111 135678899888876666
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.1e-13 Score=121.38 Aligned_cols=322 Identities=12% Similarity=0.107 Sum_probs=160.7
Q ss_pred CCCCcHHHHHHHhccCC-ccceeeeeecccchhhhcCChHHHHHHHhcccCCCCceEEEeecCCCeeeecCCCCCCCCc-
Q 046902 2 SKKIPLDIITGIFCRQP-VKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGAHDLYALDFDTLTLGTG- 79 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP-~~sl~r~r~VcK~W~~li~s~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (393)
|++||+||+..|..||| ..+++|||+||++||+.+.... ...... ..+.++..... +..++.....
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~-----~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~ 71 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG-----KKNPFR--TRPLILFNPIN-----PSETLTDDRSY 71 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc-----ccCCcc--cccccccCccc-----CCCCccccccc
Confidence 67899999999999998 6699999999999999876421 000011 11111111100 0000000000
Q ss_pred ccccCCCCCCCCccEE---eeeeeceEEEeeC---CceEEEEeccccceeccCCCCCCCCCCC-C----ceEEEE-eeeC
Q 046902 80 VQPHHHPLNIGSGTEV---LGSCNGLIALCNS---VQELALFNPSTRKLKTLPLPPCLVGFPS-A----FTFYGF-GQDK 147 (393)
Q Consensus 80 ~~~~~~p~~~~~~~~~---~~s~~GLl~~~~~---~~~~~V~NP~T~~~~~LP~~~~~~~~~~-~----~~~~~~-g~d~ 147 (393)
.......+....-+.+ .++..|.|.-.+. ...+.+.||+++.-..+|+-. .+.-. . ...+.+ +.+.
T Consensus 72 ~~~~~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~--lnll~f~v~ei~~~y~l~~~~~ 149 (373)
T PLN03215 72 ISRPGAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSES--VDLLEFTVSEIREAYQVLDWAK 149 (373)
T ss_pred cccccceeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCcc--ceeeeeEEEEccceEEEEeccc
Confidence 0000000000001111 1356788776653 367999999999977776422 12111 0 011111 1110
Q ss_pred C---CCCe--EEEEEEEeecCCC-CccEEEEEE------eCCCCeEEccccCcccccccccccccccccCceeEeCceEE
Q 046902 148 I---NDDY--KLVRVLHFKGNDG-DDVEVEVYS------LKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALH 215 (393)
Q Consensus 148 ~---~~~y--kVv~~~~~~~~~~-~~~~~~Vys------s~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~ly 215 (393)
. ...| |++.. ....++ ....+-|+. -..++|..++... .....-|+.+|++|
T Consensus 150 ~~~~~~~~~~~~~~~--~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~--------------~~~~DIi~~kGkfY 213 (373)
T PLN03215 150 RRETRPGYQRSALVK--VKEGDNHRDGVLGIGRDGKINYWDGNVLKALKQMG--------------YHFSDIIVHKGQTY 213 (373)
T ss_pred ccccccceeEEEEEE--eecCCCcceEEEEEeecCcEeeecCCeeeEccCCC--------------ceeeEEEEECCEEE
Confidence 0 0012 22211 111111 001111111 1147888886432 12445689999999
Q ss_pred EeccCCCCCcEEEEEECCCceeeeecCCCc--ccccCCceeEEEEEeCCeEEEEEEcC----------------CCeEEE
Q 046902 216 WVSPKSSTRSVIVAFDLVAEEFYQLPLPDS--VNVSYANVHVDVGSLEGCLCVFRFYN----------------LVYVDM 277 (393)
Q Consensus 216 w~~~~~~~~~~il~fD~~~e~~~~i~lP~~--~~~~~~~~~~~l~~~~G~L~~~~~~~----------------~~~~~i 277 (393)
.+... ..+.++|..-+ .+.+..+.. ...........|+++.|.|+||...- ...+.|
T Consensus 214 AvD~~----G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~V 288 (373)
T PLN03215 214 ALDSI----GIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKV 288 (373)
T ss_pred EEcCC----CeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEE
Confidence 98433 46777774321 122211110 00000112457999999999997531 125788
Q ss_pred EEEeecCCCCCeEEEEEeeCCCCCCCcc-eeeEEE--E-EeCCcEEEEEEcCcEEEEEECCCCcEEEEEEecCCCCeeee
Q 046902 278 WMMKEHAVKESWTKLFSVQEPTPTRSFL-FLRPLG--Y-SRNGVKLLLEVRREKLVWFDLETNSLRTVKIDTHGLDFVDT 353 (393)
Q Consensus 278 W~l~~~~~~~~W~~~~~i~~~~~~~~~~-~~~~~~--~-~~~g~~i~l~~~~~~l~~yd~~t~~~~~v~~~~~~~~~~~~ 353 (393)
+.++.. ...|+++.+++-..++-... .....+ + .-.+|.||+..+ ....+||++.++...+.........-.+
T Consensus 289 fklD~~--~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd-~~~~v~~~~dg~~~~~~~~~~~~~~~~~ 365 (373)
T PLN03215 289 YKFDDE--LAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTED-TMPKVFKLDNGNGSSIETTISESSQSSF 365 (373)
T ss_pred EEEcCC--CCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECC-CcceEEECCCCCccceEeecCccccchh
Confidence 888742 46899999887433221111 000000 0 013578998854 4588999999998877542122113334
Q ss_pred EEEEeccc
Q 046902 354 EICMASLV 361 (393)
Q Consensus 354 ~~y~~SL~ 361 (393)
.+|++|++
T Consensus 366 ~~~~~~~~ 373 (373)
T PLN03215 366 EMFVPSFL 373 (373)
T ss_pred eeeccccC
Confidence 56777763
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-11 Score=120.60 Aligned_cols=210 Identities=10% Similarity=0.089 Sum_probs=132.0
Q ss_pred eeeeeceEEEeeC-------CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCcc
Q 046902 96 LGSCNGLIALCNS-------VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDV 168 (393)
Q Consensus 96 ~~s~~GLl~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~ 168 (393)
++..+|-|.+.+. ...+..+||.+++|..+|+++ ... ....... ++ =||.+++.... .....
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~--~~R-~~~~~~~--~~-----g~IYviGG~~~-~~~~~ 367 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI--KNR-CRFSLAV--ID-----DTIYAIGGQNG-TNVER 367 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc--chh-hceeEEE--EC-----CEEEEECCcCC-CCCCc
Confidence 4445565554432 135889999999999999987 221 1111111 12 25666654321 11245
Q ss_pred EEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCC--------------------CCcEEE
Q 046902 169 EVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS--------------------TRSVIV 228 (393)
Q Consensus 169 ~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--------------------~~~~il 228 (393)
.+++|++.+++|+.++.+|. .......+.++|.+|.+++... ....+.
T Consensus 368 sve~Ydp~~~~W~~~~~mp~------------~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve 435 (557)
T PHA02713 368 TIECYTMGDDKWKMLPDMPI------------ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVI 435 (557)
T ss_pred eEEEEECCCCeEEECCCCCc------------ccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEE
Confidence 79999999999999988872 2234456789999999986421 124699
Q ss_pred EEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCC-C-CCeEEEEEeeCCCCCCCcc
Q 046902 229 AFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAV-K-ESWTKLFSVQEPTPTRSFL 305 (393)
Q Consensus 229 ~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~-~-~~W~~~~~i~~~~~~~~~~ 305 (393)
+||+.+++|+.++ +|.... ...+++.+|+||++++........=..+.|+. . +.|+.+..++....
T Consensus 436 ~YDP~td~W~~v~~m~~~r~------~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~----- 504 (557)
T PHA02713 436 RYDTVNNIWETLPNFWTGTI------RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS----- 504 (557)
T ss_pred EECCCCCeEeecCCCCcccc------cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-----
Confidence 9999999999874 443322 34678999999999875422111112344544 3 47999887664321
Q ss_pred eeeEEEEEeCCcEEEEEEc-Cc--EEEEEECCCCcEEEEE
Q 046902 306 FLRPLGYSRNGVKLLLEVR-RE--KLVWFDLETNSLRTVK 342 (393)
Q Consensus 306 ~~~~~~~~~~g~~i~l~~~-~~--~l~~yd~~t~~~~~v~ 342 (393)
...+++. + +.|++... +. .+-+||++|++|..+.
T Consensus 505 -~~~~~~~-~-~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 505 -ALHTILH-D-NTIMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred -cceeEEE-C-CEEEEEeeecceeehhhcCcccccccchh
Confidence 1222332 3 45665432 22 4889999999999883
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-11 Score=118.07 Aligned_cols=210 Identities=18% Similarity=0.242 Sum_probs=140.3
Q ss_pred EEeeeeeceEEEeeC-------CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCC
Q 046902 94 EVLGSCNGLIALCNS-------VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGD 166 (393)
Q Consensus 94 ~~~~s~~GLl~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~ 166 (393)
..++..+|.|...+. ...+..+||.+++|..+|++. .. ...++++. . ..+|.+++.... ...
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~--~~----R~~~~v~~--l--~g~iYavGG~dg-~~~ 394 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN--TK----RSDFGVAV--L--DGKLYAVGGFDG-EKS 394 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCcc--Cc----cccceeEE--E--CCEEEEEecccc-ccc
Confidence 345566666665541 246899999999999999987 21 11222221 1 246666665432 224
Q ss_pred ccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCC---cEEEEEECCCceeeee-cC
Q 046902 167 DVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTR---SVIVAFDLVAEEFYQL-PL 242 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~---~~il~fD~~~e~~~~i-~l 242 (393)
...+|.|++.++.|..++.++. .+.....+.++|.+|-+++.+... ..+.+||+.+++|+.+ ++
T Consensus 395 l~svE~YDp~~~~W~~va~m~~------------~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M 462 (571)
T KOG4441|consen 395 LNSVECYDPVTNKWTPVAPMLT------------RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM 462 (571)
T ss_pred cccEEEecCCCCcccccCCCCc------------ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc
Confidence 5579999999999999988771 234555678999999998863333 6899999999999997 46
Q ss_pred CCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCC-CCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEE
Q 046902 243 PDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAV-KESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLL 321 (393)
Q Consensus 243 P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l 321 (393)
+.... ...+++++|+||++++... .-.+=..+-|+. .+.|+.+..+.... ...++...++.+|+
T Consensus 463 ~~~R~------~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~~m~~~r--------s~~g~~~~~~~ly~ 527 (571)
T KOG4441|consen 463 NTRRS------GFGVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMVAPMTSPR--------SAVGVVVLGGKLYA 527 (571)
T ss_pred ccccc------cceEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEcccCcccc--------ccccEEEECCEEEE
Confidence 65442 3568999999999997654 211222343433 57899986565532 12233333456666
Q ss_pred EEcC------cEEEEEECCCCcEEEE
Q 046902 322 EVRR------EKLVWFDLETNSLRTV 341 (393)
Q Consensus 322 ~~~~------~~l~~yd~~t~~~~~v 341 (393)
.... ..+-.||+++++|+.+
T Consensus 528 vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 528 VGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred EecccCccccceeEEcCCCCCceeeC
Confidence 5321 2599999999999987
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-10 Score=111.97 Aligned_cols=235 Identities=9% Similarity=0.034 Sum_probs=139.0
Q ss_pred eEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCccc
Q 046902 111 ELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFL 190 (393)
Q Consensus 111 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~~ 190 (393)
.+..+||.+++|..+++++ .... ....+. ++ -+|+.++...........++.|++.++.|..++.+|.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp--~~r~-~~~~a~--l~-----~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~-- 340 (557)
T PHA02713 273 CILVYNINTMEYSVISTIP--NHII-NYASAI--VD-----NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK-- 340 (557)
T ss_pred CEEEEeCCCCeEEECCCCC--cccc-ceEEEE--EC-----CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc--
Confidence 4678999999999999887 2211 111111 11 2555555422111124578999999999999988772
Q ss_pred ccccccccccccccCceeEeCceEEEeccCCC--CCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEE
Q 046902 191 RDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS--TRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVF 267 (393)
Q Consensus 191 ~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~ 267 (393)
.+.....+.++|++|.+++... ....+.+||+.+++|+.++ +|.... ....++++|+||++
T Consensus 341 ----------~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~------~~~~~~~~g~IYvi 404 (557)
T PHA02713 341 ----------NRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS------SYGMCVLDQYIYII 404 (557)
T ss_pred ----------hhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc------cccEEEECCEEEEE
Confidence 2234456889999999987522 2346999999999999874 554432 34677899999999
Q ss_pred EEcCCCe-----------------EEEEEEeecCC-CCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC----
Q 046902 268 RFYNLVY-----------------VDMWMMKEHAV-KESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---- 325 (393)
Q Consensus 268 ~~~~~~~-----------------~~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---- 325 (393)
++..... ...-.++.|+. .+.|+.+..+..... ...+++. +| .||+....
T Consensus 405 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~------~~~~~~~-~~-~IYv~GG~~~~~ 476 (557)
T PHA02713 405 GGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI------RPGVVSH-KD-DIYVVCDIKDEK 476 (557)
T ss_pred eCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc------cCcEEEE-CC-EEEEEeCCCCCC
Confidence 8753210 00112333433 467988765544321 1122332 44 55554321
Q ss_pred ---cEEEEEECCC-CcEEEEEEecCCCC--eeeeEEEEeccccCCCCCCCCCCCCCccccccchHHHhh
Q 046902 326 ---EKLVWFDLET-NSLRTVKIDTHGLD--FVDTEICMASLVPLSDKGGGCGGGINGMKRRNLEEKEKR 388 (393)
Q Consensus 326 ---~~l~~yd~~t-~~~~~v~~~~~~~~--~~~~~~y~~SL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
..+..||+++ ++|+.+.- -..+ ...+..+-..|.-+..... ....|.=+.+..+|.
T Consensus 477 ~~~~~ve~Ydp~~~~~W~~~~~--m~~~r~~~~~~~~~~~iyv~Gg~~~-----~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 477 NVKTCIFRYNTNTYNGWELITT--TESRLSALHTILHDNTIMMLHCYES-----YMLQDTFNVYTYEWN 538 (557)
T ss_pred ccceeEEEecCCCCCCeeEccc--cCcccccceeEEECCEEEEEeeecc-----eeehhhcCccccccc
Confidence 2367999999 89998832 1112 3445555555554443322 123455555555553
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.1e-10 Score=109.63 Aligned_cols=197 Identities=16% Similarity=0.127 Sum_probs=133.8
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..+..+||.+++|..+.+++ .... .++.+.-. -+|.+++....+......+++|++.+++|..++.|.
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~--~~r~----~~~~~~~~----~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~-- 368 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMP--SPRC----RVGVAVLN----GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN-- 368 (571)
T ss_pred ceeEEecCCcCcEeecCCCC--cccc----cccEEEEC----CEEEEEccccCCCcccceEEEecCCCCceeccCCcc--
Confidence 45778999999999999988 2211 22222221 166666554322234578999999999999988776
Q ss_pred cccccccccccccccCceeEeCceEEEeccCCC--CCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS--TRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCV 266 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~ 266 (393)
..+.....+.++|.+|.+++.++ .-..+..||+.+++|..+. ++... .....++.+|+||+
T Consensus 369 ----------~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r------~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 369 ----------TKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR------SGHGVAVLGGKLYI 432 (571)
T ss_pred ----------CccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce------eeeEEEEECCEEEE
Confidence 22344556789999999987632 2256999999999999985 66533 24688999999999
Q ss_pred EEEcCCCeEEEEEEeecCC-CCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC------cEEEEEECCCCcEE
Q 046902 267 FRFYNLVYVDMWMMKEHAV-KESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR------EKLVWFDLETNSLR 339 (393)
Q Consensus 267 ~~~~~~~~~~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------~~l~~yd~~t~~~~ 339 (393)
+++.....-.+=.++.|++ .+.|+.+..|..... ...+++. + +.||..... ..+-.||+++++|.
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~------~~g~a~~-~-~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS------GFGVAVL-N-GKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccccc------cceEEEE-C-CEEEEECCccCCCccceEEEEcCCCCcee
Confidence 9986543323333444544 578999887776431 2224443 3 456665331 24888999999999
Q ss_pred EEE
Q 046902 340 TVK 342 (393)
Q Consensus 340 ~v~ 342 (393)
.+.
T Consensus 505 ~v~ 507 (571)
T KOG4441|consen 505 MVA 507 (571)
T ss_pred Ecc
Confidence 994
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-09 Score=107.38 Aligned_cols=192 Identities=16% Similarity=0.104 Sum_probs=121.4
Q ss_pred eEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCccc
Q 046902 111 ELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFL 190 (393)
Q Consensus 111 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~~ 190 (393)
.++.+||.|++|..+|+++ ... .....+.+ + =+|..++.... ......+++|+..+++|+.++.+|.
T Consensus 312 ~v~~yd~~~~~W~~~~~~~--~~R-~~~~~~~~--~-----~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~lp~-- 378 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELI--YPR-KNPGVTVF--N-----NRIYVIGGIYN-SISLNTVESWKPGESKWREEPPLIF-- 378 (534)
T ss_pred cEEEEeCCCCeeeECCCCC--ccc-ccceEEEE--C-----CEEEEEeCCCC-CEecceEEEEcCCCCceeeCCCcCc--
Confidence 6899999999999999877 221 11222221 1 14555554321 1234578999999999999887771
Q ss_pred ccccccccccccccCceeEeCceEEEeccCC---CCCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEE
Q 046902 191 RDFYDYLYHSLFRKGYGVLAGGALHWVSPKS---STRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCV 266 (393)
Q Consensus 191 ~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~---~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~ 266 (393)
.+.....+.++|.+|.+++.. .....+..||+.+++|+.+. +|.... ....+..+|+|++
T Consensus 379 ----------~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~------~~~~~~~~~~iyv 442 (534)
T PHA03098 379 ----------PRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY------GGCAIYHDGKIYV 442 (534)
T ss_pred ----------CCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc------CceEEEECCEEEE
Confidence 223445678999999998741 12357999999999999874 443322 2356778999999
Q ss_pred EEEcCCC-----eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc------CcEEEEEECCC
Q 046902 267 FRFYNLV-----YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR------REKLVWFDLET 335 (393)
Q Consensus 267 ~~~~~~~-----~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~------~~~l~~yd~~t 335 (393)
+++.... .-.+|..+- ..+.|+.+..++.+. .....++. ++ .|++... ...+..||+++
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~r------~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNP--VTNKWTELSSLNFPR------INASLCIF-NN-KIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ECCccCCCCCcccceEEEecC--CCCceeeCCCCCccc------ccceEEEE-CC-EEEEEcCCcCCcccceeEEEeCCC
Confidence 9865321 123555553 246899875444321 11112222 44 4555432 13599999999
Q ss_pred CcEEEE
Q 046902 336 NSLRTV 341 (393)
Q Consensus 336 ~~~~~v 341 (393)
++|+.+
T Consensus 513 ~~W~~~ 518 (534)
T PHA03098 513 NTWTLF 518 (534)
T ss_pred CEEEec
Confidence 999988
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-09 Score=104.39 Aligned_cols=184 Identities=13% Similarity=0.009 Sum_probs=118.1
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..+..+||.+++|..+|+++ ... .....+. .+ -+|.+++... ....++.|+..+++|..++.+|.
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~--~~r-~~~~~v~--~~-----~~iYviGG~~----~~~sve~ydp~~n~W~~~~~l~~- 351 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMN--SPR-LYASGVP--AN-----NKLYVVGGLP----NPTSVERWFHGDAAWVNMPSLLK- 351 (480)
T ss_pred CeEEEEECCCCEEEECCCCC--chh-hcceEEE--EC-----CEEEEECCcC----CCCceEEEECCCCeEEECCCCCC-
Confidence 35778999999999999987 221 1111211 11 2555555321 12458999999999999988772
Q ss_pred cccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVFR 268 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~~ 268 (393)
.+.....+.++|.+|.+++.......+..||+.+++|+.++ +|.... ....++.+|+|++++
T Consensus 352 -----------~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~------~~~~~~~~~~IYv~G 414 (480)
T PHA02790 352 -----------PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHY------KSCALVFGRRLFLVG 414 (480)
T ss_pred -----------CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccc------cceEEEECCEEEEEC
Confidence 22345578899999999875333356889999999999974 333221 346678999999998
Q ss_pred EcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC------cEEEEEECCCCcEEEE
Q 046902 269 FYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR------EKLVWFDLETNSLRTV 341 (393)
Q Consensus 269 ~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------~~l~~yd~~t~~~~~v 341 (393)
+. .++. +.. .+.|+.+..++.+. ....+++. +| .||+.... ..+..||+++++|+.-
T Consensus 415 G~----~e~y---dp~-~~~W~~~~~m~~~r------~~~~~~v~-~~-~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 415 RN----AEFY---CES-SNTWTLIDDPIYPR------DNPELIIV-DN-KLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred Cc----eEEe---cCC-CCcEeEcCCCCCCc------cccEEEEE-CC-EEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 52 2221 222 46899876554322 11122332 44 56664321 3588999999999754
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-08 Score=94.13 Aligned_cols=210 Identities=11% Similarity=0.011 Sum_probs=118.9
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..++++||.+++|..+|++. .........+++... . =+|+.++..... .....+++|++.+++|+.++.++..
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~--~~p~~~~~~~~~~~~--~--~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~ 122 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANG--DVPRISCLGVRMVAV--G--TKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEE 122 (341)
T ss_pred CcEEEEECCCCEEEEcCccC--CCCCCccCceEEEEE--C--CEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCC
Confidence 36899999999999988654 111110101111111 1 255555542211 1234689999999999988755210
Q ss_pred cccccccccccccccCceeEeCceEEEeccCCCC--------CcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeC
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSST--------RSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLE 261 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~--------~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~ 261 (393)
. ....+.....+..+|++|.+++.... -..+.+||+.+.+|..++.+.... .......++..+
T Consensus 123 ~-------~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~--~~r~~~~~~~~~ 193 (341)
T PLN02153 123 G-------GPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF--EKRGGAGFAVVQ 193 (341)
T ss_pred C-------CCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC--CCCCcceEEEEC
Confidence 0 01122345567899999999875211 135889999999999876432110 011123567789
Q ss_pred CeEEEEEEcCC---------C-eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC------
Q 046902 262 GCLCVFRFYNL---------V-YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR------ 325 (393)
Q Consensus 262 G~L~~~~~~~~---------~-~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------ 325 (393)
|+|+++..... . .-++++++- ....|+++........ .. ......+. + +.||+-...
T Consensus 194 ~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~--~~~~W~~~~~~g~~P~-~r--~~~~~~~~-~-~~iyv~GG~~~~~~~ 266 (341)
T PLN02153 194 GKIWVVYGFATSILPGGKSDYESNAVQFFDP--ASGKWTEVETTGAKPS-AR--SVFAHAVV-G-KYIIIFGGEVWPDLK 266 (341)
T ss_pred CeEEEEeccccccccCCccceecCceEEEEc--CCCcEEeccccCCCCC-Cc--ceeeeEEE-C-CEEEEECcccCCccc
Confidence 99999865321 0 124666653 2467998765421110 01 11112222 3 445553221
Q ss_pred ---------cEEEEEECCCCcEEEEE
Q 046902 326 ---------EKLVWFDLETNSLRTVK 342 (393)
Q Consensus 326 ---------~~l~~yd~~t~~~~~v~ 342 (393)
..++.||+++++|+.+.
T Consensus 267 ~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 267 GHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred cccccccccccEEEEEcCccEEEecc
Confidence 25899999999999884
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.6e-08 Score=90.77 Aligned_cols=217 Identities=14% Similarity=0.076 Sum_probs=123.3
Q ss_pred eeeceEEEee--CCceEEEEec--cccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCC-----CCcc
Q 046902 98 SCNGLIALCN--SVQELALFNP--STRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGND-----GDDV 168 (393)
Q Consensus 98 s~~GLl~~~~--~~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~-----~~~~ 168 (393)
..++-|.+.. ....+++.++ .+++|..+|+++ .........+. .+ =+|.+++...... ....
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p--~~~R~~~~~~~--~~-----~~iYv~GG~~~~~~~~~~~~~~ 85 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFP--GGPRNQAVAAA--ID-----GKLYVFGGIGKANSEGSPQVFD 85 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCC--CCCcccceEEE--EC-----CEEEEEeCCCCCCCCCcceecc
Confidence 4445554433 2245777774 778999999876 21111111111 11 2566555432111 0234
Q ss_pred EEEEEEeCCCCeEEccc-cCcccccccccccccccccCcee-EeCceEEEeccCCCC-----------------------
Q 046902 169 EVEVYSLKTNSWRRISN-LPRFLRDFYDYLYHSLFRKGYGV-LAGGALHWVSPKSST----------------------- 223 (393)
Q Consensus 169 ~~~Vyss~t~~W~~~~~-~p~~~~~~~~~~~~~~~~~~~~v-~~~G~lyw~~~~~~~----------------------- 223 (393)
.++.|++.+++|+.++. +| ........+ .++|+||.+++....
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p------------~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSP------------VGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLI 153 (346)
T ss_pred cEEEEECCCCEEecCCCCCC------------CcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhH
Confidence 69999999999999863 23 111122233 589999999764211
Q ss_pred -------------CcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEEEEcCC---CeEEEEEEeecCCC
Q 046902 224 -------------RSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVFRFYNL---VYVDMWMMKEHAVK 286 (393)
Q Consensus 224 -------------~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~---~~~~iW~l~~~~~~ 286 (393)
...+.+||+.+++|+.+. +|.... ....++..+|+|++++.... ...++|..+-....
T Consensus 154 ~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r-----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~ 228 (346)
T TIGR03547 154 AAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGT-----AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGK 228 (346)
T ss_pred HHHhCCChhHcCccceEEEEECCCCceeECccCCCCcC-----CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCC
Confidence 157999999999999984 553221 13467888999999987532 13456665521124
Q ss_pred CCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC-----------------------cEEEEEECCCCcEEEE
Q 046902 287 ESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR-----------------------EKLVWFDLETNSLRTV 341 (393)
Q Consensus 287 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-----------------------~~l~~yd~~t~~~~~v 341 (393)
..|+.+..++.+............++.-+| .|++.... ..+-+||+++++|+.+
T Consensus 229 ~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~ 305 (346)
T TIGR03547 229 LEWNKLPPLPPPKSSSQEGLAGAFAGISNG-VLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKV 305 (346)
T ss_pred ceeeecCCCCCCCCCccccccEEeeeEECC-EEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccccc
Confidence 579987766532210000001111222244 55554321 1367899999999988
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.8e-08 Score=94.64 Aligned_cols=206 Identities=11% Similarity=0.080 Sum_probs=121.4
Q ss_pred eEEEEeccccceeccCCCCCCCCCCC-CceEEEE-eeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCc
Q 046902 111 ELALFNPSTRKLKTLPLPPCLVGFPS-AFTFYGF-GQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPR 188 (393)
Q Consensus 111 ~~~V~NP~T~~~~~LP~~~~~~~~~~-~~~~~~~-g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~ 188 (393)
.++++||.+++|..+|+.. ..+. ....+++ .++ =+++.++.... ......+++|++.+++|+.+..++.
T Consensus 194 ~v~~yD~~~~~W~~~~~~g---~~P~~~~~~~~~v~~~-----~~lYvfGG~~~-~~~~ndv~~yD~~t~~W~~l~~~~~ 264 (470)
T PLN02193 194 HLYVFDLETRTWSISPATG---DVPHLSCLGVRMVSIG-----STLYVFGGRDA-SRQYNGFYSFDTTTNEWKLLTPVEE 264 (470)
T ss_pred cEEEEECCCCEEEeCCCCC---CCCCCcccceEEEEEC-----CEEEEECCCCC-CCCCccEEEEECCCCEEEEcCcCCC
Confidence 5899999999999887542 1111 1111111 111 14554443221 1123568999999999999875521
Q ss_pred ccccccccccccccccCceeEeCceEEEeccCCC--CCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEE
Q 046902 189 FLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS--TRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCV 266 (393)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~ 266 (393)
. ...+.....+.+++++|.++.... ....+.+||+.+.+|+.++.|.... .......++..+|++++
T Consensus 265 ~---------P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~--~~R~~~~~~~~~gkiyv 333 (470)
T PLN02193 265 G---------PTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSF--SIRGGAGLEVVQGKVWV 333 (470)
T ss_pred C---------CCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCC--CCCCCcEEEEECCcEEE
Confidence 0 012234456778999999986521 2346899999999999887543221 11123466778999999
Q ss_pred EEEcCCC-eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC---------------cEEEE
Q 046902 267 FRFYNLV-YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---------------EKLVW 330 (393)
Q Consensus 267 ~~~~~~~-~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---------------~~l~~ 330 (393)
+...... .-++|+++-. ...|+++..+..... ... ....++. ++ .|++-... ..++.
T Consensus 334 iGG~~g~~~~dv~~yD~~--t~~W~~~~~~g~~P~-~R~--~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 334 VYGFNGCEVDDVHYYDPV--QDKWTQVETFGVRPS-ERS--VFASAAV-GK-HIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred EECCCCCccCceEEEECC--CCEEEEeccCCCCCC-Ccc--eeEEEEE-CC-EEEEECCccCCccccccCccceeccEEE
Confidence 9865322 3467887742 467998765522111 111 1122222 33 45543211 14899
Q ss_pred EECCCCcEEEEEE
Q 046902 331 FDLETNSLRTVKI 343 (393)
Q Consensus 331 yd~~t~~~~~v~~ 343 (393)
||++|++|+.+..
T Consensus 407 ~D~~t~~W~~~~~ 419 (470)
T PLN02193 407 LDTETLQWERLDK 419 (470)
T ss_pred EEcCcCEEEEccc
Confidence 9999999998853
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-07 Score=89.03 Aligned_cols=258 Identities=13% Similarity=0.019 Sum_probs=138.5
Q ss_pred eeeeeceEEEee--CCceEEEEecc--ccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeec-CC----CC
Q 046902 96 LGSCNGLIALCN--SVQELALFNPS--TRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKG-ND----GD 166 (393)
Q Consensus 96 ~~s~~GLl~~~~--~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~-~~----~~ 166 (393)
.+..++-|.+.. ....++++++. +++|..+|+++ .........+.+ + + +|..++.... .. ..
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p--~~~r~~~~~v~~--~---~--~IYV~GG~~~~~~~~~~~~ 104 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFP--GGPREQAVAAFI--D---G--KLYVFGGIGKTNSEGSPQV 104 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCC--CCCcccceEEEE--C---C--EEEEEcCCCCCCCCCceeE
Confidence 344566555432 22457777765 57899999765 111111111111 1 2 4444443221 00 11
Q ss_pred ccEEEEEEeCCCCeEEcccc-CcccccccccccccccccCceeE-eCceEEEeccCCC----------------------
Q 046902 167 DVEVEVYSLKTNSWRRISNL-PRFLRDFYDYLYHSLFRKGYGVL-AGGALHWVSPKSS---------------------- 222 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~-p~~~~~~~~~~~~~~~~~~~~v~-~~G~lyw~~~~~~---------------------- 222 (393)
...+++|+..+++|+.+... | ........+. .+|+||.+++...
T Consensus 105 ~~~v~~YD~~~n~W~~~~~~~p------------~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~ 172 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDTRSP------------VGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDK 172 (376)
T ss_pred cccEEEEeCCCCEEEeCCCCCC------------CcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhh
Confidence 34699999999999998742 3 1112223344 7999999987421
Q ss_pred --------------CCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEEEEcC---CCeEEEEEEeecC
Q 046902 223 --------------TRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVFRFYN---LVYVDMWMMKEHA 284 (393)
Q Consensus 223 --------------~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~---~~~~~iW~l~~~~ 284 (393)
....+.+||+.+++|+.+. +|.... ....++..+++|++++... ....++|..+-+.
T Consensus 173 i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~-----~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~ 247 (376)
T PRK14131 173 INDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGT-----AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTG 247 (376)
T ss_pred hHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCC-----CcceEEEECCEEEEEeeeECCCcCChhheEEEecC
Confidence 1246999999999999874 553221 1336677899999998742 2246677665322
Q ss_pred CCCCeEEEEEeeCCCCCC-CcceeeEEEEEeCCcEEEEEEcC-----------------------cEEEEEECCCCcEEE
Q 046902 285 VKESWTKLFSVQEPTPTR-SFLFLRPLGYSRNGVKLLLEVRR-----------------------EKLVWFDLETNSLRT 340 (393)
Q Consensus 285 ~~~~W~~~~~i~~~~~~~-~~~~~~~~~~~~~g~~i~l~~~~-----------------------~~l~~yd~~t~~~~~ 340 (393)
....|+++..++...... ........++.-++ .||+.... ..+-.||+++++|+.
T Consensus 248 ~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~ 326 (376)
T PRK14131 248 NNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNG-VLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQK 326 (376)
T ss_pred CCcceeecCCCCCCCcCCcCCccceEeceeECC-EEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccc
Confidence 246899887665422100 00011111222343 55554321 024579999999998
Q ss_pred EEEecCCCC--eeeeEEEEeccccCCCCCCCCCCCCCccccccch
Q 046902 341 VKIDTHGLD--FVDTEICMASLVPLSDKGGGCGGGINGMKRRNLE 383 (393)
Q Consensus 341 v~~~~~~~~--~~~~~~y~~SL~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
+.- ...+ ...+...-..|+-+... ...+...+.....+.+
T Consensus 327 ~~~--lp~~r~~~~av~~~~~iyv~GG~-~~~~~~~~~v~~~~~~ 368 (376)
T PRK14131 327 VGE--LPQGLAYGVSVSWNNGVLLIGGE-TAGGKAVSDVTLLSWD 368 (376)
T ss_pred cCc--CCCCccceEEEEeCCEEEEEcCC-CCCCcEeeeEEEEEEc
Confidence 732 1112 33444455555555432 2233333344333333
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-07 Score=87.29 Aligned_cols=155 Identities=18% Similarity=0.209 Sum_probs=95.2
Q ss_pred eEEEE-ecccc-ceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCe----EEcc
Q 046902 111 ELALF-NPSTR-KLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSW----RRIS 184 (393)
Q Consensus 111 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W----~~~~ 184 (393)
.+++. +|..+ +|..+++++ .... .... ..++ =+|+.++.... ......++.|+..++.| +.++
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp--~~r~-~~~~--~~~~-----~~lyviGG~~~-~~~~~~v~~~d~~~~~w~~~~~~~~ 108 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLP--YEAA-YGAS--VSVE-----NGIYYIGGSNS-SERFSSVYRITLDESKEELICETIG 108 (323)
T ss_pred eeEEEecCCCceeEEEcccCC--cccc-ceEE--EEEC-----CEEEEEcCCCC-CCCceeEEEEEEcCCceeeeeeEcC
Confidence 45655 45433 799888776 2111 1111 2221 14555553221 12345789999999988 6666
Q ss_pred ccCcccccccccccccccccCceeEeCceEEEeccC--CCCCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeC
Q 046902 185 NLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK--SSTRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLE 261 (393)
Q Consensus 185 ~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~--~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~ 261 (393)
.+| . ......++.++|++|.+++. ......+.+||+.+++|+.++ +|.... ....++..+
T Consensus 109 ~lp----------~--~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r-----~~~~~~~~~ 171 (323)
T TIGR03548 109 NLP----------F--TFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR-----VQPVCVKLQ 171 (323)
T ss_pred CCC----------c--CccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC-----CcceEEEEC
Confidence 666 1 12345567899999999864 122357999999999999985 664221 123557889
Q ss_pred CeEEEEEEcCCC-eEEEEEEeecCCCCCeEEEEEe
Q 046902 262 GCLCVFRFYNLV-YVDMWMMKEHAVKESWTKLFSV 295 (393)
Q Consensus 262 G~L~~~~~~~~~-~~~iW~l~~~~~~~~W~~~~~i 295 (393)
|+|++++..... ..++|+.+- ....|+++..+
T Consensus 172 ~~iYv~GG~~~~~~~~~~~yd~--~~~~W~~~~~~ 204 (323)
T TIGR03548 172 NELYVFGGGSNIAYTDGYKYSP--KKNQWQKVADP 204 (323)
T ss_pred CEEEEEcCCCCccccceEEEec--CCCeeEECCCC
Confidence 999999875432 345666553 14679886544
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.8e-08 Score=97.98 Aligned_cols=235 Identities=10% Similarity=-0.014 Sum_probs=136.9
Q ss_pred eEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCccc
Q 046902 111 ELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFL 190 (393)
Q Consensus 111 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~~ 190 (393)
.+.-+|+.+++|..++..+ .. .....+ ..+ -+|+.++...........+..|+..+++|..++.+|.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~--~~--~~~~~~--~~~-----~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-- 331 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIH--YV--YCFGSV--VLN-----NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY-- 331 (534)
T ss_pred eeeecchhhhhcccccCcc--cc--ccceEE--EEC-----CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCc--
Confidence 3556788999999887655 11 111111 111 2455554332222223468999999999999887761
Q ss_pred ccccccccccccccCceeEeCceEEEeccCC--CCCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEE
Q 046902 191 RDFYDYLYHSLFRKGYGVLAGGALHWVSPKS--STRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVF 267 (393)
Q Consensus 191 ~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~--~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~ 267 (393)
.+.....+.++|.+|.+++.. .....+..||+.+.+|+.++ +|.... ....+..+|+++++
T Consensus 332 ----------~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~------~~~~~~~~~~iYv~ 395 (534)
T PHA03098 332 ----------PRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRY------NPCVVNVNNLIYVI 395 (534)
T ss_pred ----------ccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCc------cceEEEECCEEEEE
Confidence 223455678999999998752 12356899999999999874 554332 33567889999999
Q ss_pred EEcCCC---eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC---------cEEEEEECCC
Q 046902 268 RFYNLV---YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---------EKLVWFDLET 335 (393)
Q Consensus 268 ~~~~~~---~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---------~~l~~yd~~t 335 (393)
++.... .-.+++.+- ..+.|+....++... . .....+ -+ +.|++.... ..+..||+++
T Consensus 396 GG~~~~~~~~~~v~~yd~--~t~~W~~~~~~p~~r----~--~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 396 GGISKNDELLKTVECFSL--NTNKWSKGSPLPISH----Y--GGCAIY-HD-GKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CCcCCCCcccceEEEEeC--CCCeeeecCCCCccc----c--CceEEE-EC-CEEEEECCccCCCCCcccceEEEecCCC
Confidence 874221 124555553 146798865444321 1 111222 23 456554321 2489999999
Q ss_pred CcEEEEEEecCCCC--eeeeEEEEeccccCCCCCCCCCCCCCccccccchHHHhh
Q 046902 336 NSLRTVKIDTHGLD--FVDTEICMASLVPLSDKGGGCGGGINGMKRRNLEEKEKR 388 (393)
Q Consensus 336 ~~~~~v~~~~~~~~--~~~~~~y~~SL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
++|+.+.- ...+ ...++.+-..+.-+..... ....+..+.-+.+..+|.
T Consensus 466 ~~W~~~~~--~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 466 NKWTELSS--LNFPRINASLCIFNNKIYVVGGDKY--EYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CceeeCCC--CCcccccceEEEECCEEEEEcCCcC--CcccceeEEEeCCCCEEE
Confidence 99998832 2222 3345555555555433221 122345555555555554
|
|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-10 Score=74.25 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=36.6
Q ss_pred CCCCcHHHHHHHhccCCccceeeeeecccchhhhcCChHHHH
Q 046902 2 SKKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIK 43 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~ 43 (393)
|..||+|++.+||++||++++.++++|||+|+.++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 578999999999999999999999999999999998885543
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.6e-07 Score=84.29 Aligned_cols=178 Identities=11% Similarity=0.111 Sum_probs=105.0
Q ss_pred eeeeeceEEEeeC------CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCC-----
Q 046902 96 LGSCNGLIALCNS------VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGND----- 164 (393)
Q Consensus 96 ~~s~~GLl~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~----- 164 (393)
+++.+|.|.+... ...++++||.|++|..++++.. ...+.....++.... .+ |++.++......
T Consensus 81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~-~~~p~~R~~~~~~~~--~~--~iyv~GG~~~~~~~~~~ 155 (341)
T PLN02153 81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDE-EGGPEARTFHSMASD--EN--HVYVFGGVSKGGLMKTP 155 (341)
T ss_pred EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCC-CCCCCCceeeEEEEE--CC--EEEEECCccCCCccCCC
Confidence 3445555544431 2368999999999999986521 000111112222211 11 455554322111
Q ss_pred CCccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCC----------CCCcEEEEEECCC
Q 046902 165 GDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS----------STRSVIVAFDLVA 234 (393)
Q Consensus 165 ~~~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~----------~~~~~il~fD~~~ 234 (393)
.....+++|+..+++|+.++.+... ...+.....+.++|++|.+.+.. .....+.+||+.+
T Consensus 156 ~~~~~v~~yd~~~~~W~~l~~~~~~---------~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~ 226 (341)
T PLN02153 156 ERFRTIEAYNIADGKWVQLPDPGEN---------FEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPAS 226 (341)
T ss_pred cccceEEEEECCCCeEeeCCCCCCC---------CCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCC
Confidence 0124689999999999988654200 01122334577999999886431 1124699999999
Q ss_pred ceeeeec----CCCcccccCCceeEEEEEeCCeEEEEEEcCC---------C--eEEEEEEeecCCCCCeEEEEEe
Q 046902 235 EEFYQLP----LPDSVNVSYANVHVDVGSLEGCLCVFRFYNL---------V--YVDMWMMKEHAVKESWTKLFSV 295 (393)
Q Consensus 235 e~~~~i~----lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~---------~--~~~iW~l~~~~~~~~W~~~~~i 295 (393)
.+|+.++ +|.... ....+..+++|++++.... . .-++|+++-. ...|+++...
T Consensus 227 ~~W~~~~~~g~~P~~r~------~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--~~~W~~~~~~ 294 (341)
T PLN02153 227 GKWTEVETTGAKPSARS------VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--TLVWEKLGEC 294 (341)
T ss_pred CcEEeccccCCCCCCcc------eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC--ccEEEeccCC
Confidence 9999975 343321 3456788999999987421 1 1278998852 4689987643
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.2e-07 Score=90.86 Aligned_cols=184 Identities=13% Similarity=0.062 Sum_probs=116.8
Q ss_pred ccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeee-cCCCc
Q 046902 167 DVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQL-PLPDS 245 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i-~lP~~ 245 (393)
...++.|++.+++|..++.++. .+.....+.++|.+|.+++... ...+..||+.+++|..+ ++|..
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~------------~r~~~~~v~~~~~iYviGG~~~-~~sve~ydp~~n~W~~~~~l~~~ 352 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNS------------PRLYASGVPANNKLYVVGGLPN-PTSVERWFHGDAAWVNMPSLLKP 352 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCc------------hhhcceEEEECCEEEEECCcCC-CCceEEEECCCCeEEECCCCCCC
Confidence 3568899999999999988772 1223456789999999987522 25689999999999987 45543
Q ss_pred ccccCCceeEEEEEeCCeEEEEEEcCCC--eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE
Q 046902 246 VNVSYANVHVDVGSLEGCLCVFRFYNLV--YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV 323 (393)
Q Consensus 246 ~~~~~~~~~~~l~~~~G~L~~~~~~~~~--~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~ 323 (393)
.. ....++++|+||++++.... .++.+ + .. .+.|+.+..++.+. ....++.-+ +.||+..
T Consensus 353 r~------~~~~~~~~g~IYviGG~~~~~~~ve~y--d-p~-~~~W~~~~~m~~~r-------~~~~~~~~~-~~IYv~G 414 (480)
T PHA02790 353 RC------NPAVASINNVIYVIGGHSETDTTTEYL--L-PN-HDQWQFGPSTYYPH-------YKSCALVFG-RRLFLVG 414 (480)
T ss_pred Cc------ccEEEEECCEEEEecCcCCCCccEEEE--e-CC-CCEEEeCCCCCCcc-------ccceEEEEC-CEEEEEC
Confidence 32 34778999999999875432 23332 2 11 46798865544322 111222223 5677764
Q ss_pred cCcEEEEEECCCCcEEEEEEecCCCC--eeeeEEEEeccccCCCCCCCCCCCCCccccccchHHHh
Q 046902 324 RREKLVWFDLETNSLRTVKIDTHGLD--FVDTEICMASLVPLSDKGGGCGGGINGMKRRNLEEKEK 387 (393)
Q Consensus 324 ~~~~l~~yd~~t~~~~~v~~~~~~~~--~~~~~~y~~SL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
. ...+||+++++|+.+.- ...+ ...+..+-..+.-+.+... +..++..|.-+.+..+|
T Consensus 415 G--~~e~ydp~~~~W~~~~~--m~~~r~~~~~~v~~~~IYviGG~~~--~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 415 R--NAEFYCESSNTWTLIDD--PIYPRDNPELIIVDNKLLLIGGFYR--GSYIDTIEVYNNRTYSW 474 (480)
T ss_pred C--ceEEecCCCCcEeEcCC--CCCCccccEEEEECCEEEEECCcCC--CcccceEEEEECCCCeE
Confidence 2 37789999999998832 1222 4566667667766654332 12234455555555544
|
|
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-09 Score=70.69 Aligned_cols=44 Identities=34% Similarity=0.385 Sum_probs=37.5
Q ss_pred CCCCcHHHHHHHhccCCccceeeeeecccchhhhcCChHHHHHH
Q 046902 2 SKKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLH 45 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~ 45 (393)
+.+||+|++.+||.+||.+++++++.|||+|++++.++.+...+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 35799999999999999999999999999999999999887654
|
This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=98.72 E-value=6e-06 Score=80.62 Aligned_cols=176 Identities=13% Similarity=0.132 Sum_probs=106.4
Q ss_pred eeeeeceEEEeeC------CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccE
Q 046902 96 LGSCNGLIALCNS------VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVE 169 (393)
Q Consensus 96 ~~s~~GLl~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~ 169 (393)
++..++.|.+... ...++++||.|++|..++++. .. +.....+++... +=+++.+..... ......
T Consensus 224 ~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~--~~-P~~R~~h~~~~~----~~~iYv~GG~~~-~~~~~~ 295 (470)
T PLN02193 224 MVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVE--EG-PTPRSFHSMAAD----EENVYVFGGVSA-TARLKT 295 (470)
T ss_pred EEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCC--CC-CCCccceEEEEE----CCEEEEECCCCC-CCCcce
Confidence 3445665554431 246899999999999998763 11 111111122111 124555543221 113356
Q ss_pred EEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCC-CCCcEEEEEECCCceeeeecC----CC
Q 046902 170 VEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS-STRSVIVAFDLVAEEFYQLPL----PD 244 (393)
Q Consensus 170 ~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~-~~~~~il~fD~~~e~~~~i~l----P~ 244 (393)
+++|+..+++|+.++.... . ...+.....+.++|++|.+.... .....+.+||+.+.+|+.++. |.
T Consensus 296 ~~~yd~~t~~W~~~~~~~~-~--------~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~ 366 (470)
T PLN02193 296 LDSYNIVDKKWFHCSTPGD-S--------FSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPS 366 (470)
T ss_pred EEEEECCCCEEEeCCCCCC-C--------CCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCC
Confidence 8999999999998754210 0 01123344567899999987642 123579999999999998752 32
Q ss_pred cccccCCceeEEEEEeCCeEEEEEEcCC---------Ce--EEEEEEeecCCCCCeEEEEEee
Q 046902 245 SVNVSYANVHVDVGSLEGCLCVFRFYNL---------VY--VDMWMMKEHAVKESWTKLFSVQ 296 (393)
Q Consensus 245 ~~~~~~~~~~~~l~~~~G~L~~~~~~~~---------~~--~~iW~l~~~~~~~~W~~~~~i~ 296 (393)
.. .....+..+++|++++.... .. -++|.++-. ...|+++..+.
T Consensus 367 ~R------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~--t~~W~~~~~~~ 421 (470)
T PLN02193 367 ER------SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE--TLQWERLDKFG 421 (470)
T ss_pred Cc------ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC--cCEEEEcccCC
Confidence 21 13456788999999986421 11 268999852 46799876554
|
|
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Probab=98.64 E-value=5e-09 Score=65.18 Aligned_cols=39 Identities=46% Similarity=0.668 Sum_probs=36.7
Q ss_pred CcHHHHHHHhccCCccceeeeeecccchhhhcCChHHHH
Q 046902 5 IPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIK 43 (393)
Q Consensus 5 LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~ 43 (393)
||+|++.+||.+||++++.++++|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988753
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.5e-05 Score=74.20 Aligned_cols=155 Identities=19% Similarity=0.201 Sum_probs=88.3
Q ss_pred cEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCC---CC--CcEEEEEECCCceeeeec-
Q 046902 168 VEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS---ST--RSVIVAFDLVAEEFYQLP- 241 (393)
Q Consensus 168 ~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~---~~--~~~il~fD~~~e~~~~i~- 241 (393)
..+++|+..++.|+.++.+| .. .......+.++++||.+++.. .. ......||+.+.+|..+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p----------~~-~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 257 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESP----------FL-GTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD 257 (376)
T ss_pred ceEEEEECCCCeeeECCcCC----------CC-CCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC
Confidence 46999999999999988776 11 112334567899999998641 11 123456678899999874
Q ss_pred CCCcccc-cCCc-eeEEEEEeCCeEEEEEEcCCC---------e-------EEEEEEeecCC-CCCeEEEEEeeCCCCCC
Q 046902 242 LPDSVNV-SYAN-VHVDVGSLEGCLCVFRFYNLV---------Y-------VDMWMMKEHAV-KESWTKLFSVQEPTPTR 302 (393)
Q Consensus 242 lP~~~~~-~~~~-~~~~l~~~~G~L~~~~~~~~~---------~-------~~iW~l~~~~~-~~~W~~~~~i~~~~~~~ 302 (393)
+|..... .... .....+..+|+|++++..... . -.+|..+-|.. ...|++...++.+.
T Consensus 258 ~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r--- 334 (376)
T PRK14131 258 LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL--- 334 (376)
T ss_pred CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc---
Confidence 5543210 0011 122356789999999864310 0 12343332321 46798876554321
Q ss_pred CcceeeEEEEEeCCcEEEEEEcC------cEEEEEECCCCcEEE
Q 046902 303 SFLFLRPLGYSRNGVKLLLEVRR------EKLVWFDLETNSLRT 340 (393)
Q Consensus 303 ~~~~~~~~~~~~~g~~i~l~~~~------~~l~~yd~~t~~~~~ 340 (393)
... .++.-++.++++.... ..+..|+++++++..
T Consensus 335 ---~~~-~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 335 ---AYG-VSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred ---cce-EEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 111 2333344444443221 258888888877653
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=98.46 E-value=4e-05 Score=71.27 Aligned_cols=140 Identities=11% Similarity=0.022 Sum_probs=84.7
Q ss_pred ceEEEEeccccce----eccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccc
Q 046902 110 QELALFNPSTRKL----KTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISN 185 (393)
Q Consensus 110 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~ 185 (393)
..++.+|+.+++| ..+|+++ .... .... ..++ =+|..++.... ......+++|++.+++|+.++.
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp--~~~~-~~~~--~~~~-----~~iYv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~ 156 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLP--FTFE-NGSA--CYKD-----GTLYVGGGNRN-GKPSNKSYLFNLETQEWFELPD 156 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCC--cCcc-CceE--EEEC-----CEEEEEeCcCC-CccCceEEEEcCCCCCeeECCC
Confidence 4688899999987 6778776 2211 1111 1122 15555543211 1134579999999999999987
Q ss_pred cCcccccccccccccccccCceeEeCceEEEeccCCC-CCcEEEEEECCCceeeeecC-CCcccccCCceeEEEEEeCCe
Q 046902 186 LPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS-TRSVIVAFDLVAEEFYQLPL-PDSVNVSYANVHVDVGSLEGC 263 (393)
Q Consensus 186 ~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~-~~~~il~fD~~~e~~~~i~l-P~~~~~~~~~~~~~l~~~~G~ 263 (393)
+|. . .+.....+.++|.||.+++... ....+.+||+.+++|+.++. +.............++..+|+
T Consensus 157 ~p~----------~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~ 225 (323)
T TIGR03548 157 FPG----------E-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESL 225 (323)
T ss_pred CCC----------C-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCE
Confidence 662 1 1223345679999999986521 12347899999999998753 211100000112345566899
Q ss_pred EEEEEEcC
Q 046902 264 LCVFRFYN 271 (393)
Q Consensus 264 L~~~~~~~ 271 (393)
|++++...
T Consensus 226 iyv~GG~~ 233 (323)
T TIGR03548 226 LLCIGGFN 233 (323)
T ss_pred EEEECCcC
Confidence 99998653
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.9e-05 Score=69.30 Aligned_cols=142 Identities=14% Similarity=0.133 Sum_probs=85.3
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEe--CCCCeEEccccC
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSL--KTNSWRRISNLP 187 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss--~t~~W~~~~~~p 187 (393)
..+.++||.|++|..+++++ .........+ .++ -||..++...........+++|+. +++.|..+..+|
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p--~~~r~~~~~~--~~~-----~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~ 238 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENP--FLGTAGSAIV--HKG-----NKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLP 238 (346)
T ss_pred ceEEEEECCCCceeECccCC--CCcCCCceEE--EEC-----CEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCC
Confidence 46889999999999999876 2111111111 122 255555543221112234556665 667999998776
Q ss_pred cccccccccccccccccCceeEeCceEEEeccCCC-------------------CCcEEEEEECCCceeeee-cCCCccc
Q 046902 188 RFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS-------------------TRSVIVAFDLVAEEFYQL-PLPDSVN 247 (393)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~-------------------~~~~il~fD~~~e~~~~i-~lP~~~~ 247 (393)
..... ..........+.++|.||.+++... ....+.+||+.+++|+.+ ++|....
T Consensus 239 ~~r~~-----~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~ 313 (346)
T TIGR03547 239 PPKSS-----SQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLA 313 (346)
T ss_pred CCCCC-----ccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCce
Confidence 21000 0000011225678999999986421 012578999999999887 4665432
Q ss_pred ccCCceeEEEEEeCCeEEEEEEcC
Q 046902 248 VSYANVHVDVGSLEGCLCVFRFYN 271 (393)
Q Consensus 248 ~~~~~~~~~l~~~~G~L~~~~~~~ 271 (393)
....+.++|+|++++...
T Consensus 314 ------~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 314 ------YGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred ------eeEEEEcCCEEEEEeccC
Confidence 345678899999999754
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0001 Score=63.63 Aligned_cols=222 Identities=13% Similarity=0.164 Sum_probs=127.5
Q ss_pred eeeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCC-----CceEEE---EeeeCCCCCeEEEEEEEeecCCCCcc
Q 046902 97 GSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPS-----AFTFYG---FGQDKINDDYKLVRVLHFKGNDGDDV 168 (393)
Q Consensus 97 ~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~-----~~~~~~---~g~d~~~~~ykVv~~~~~~~~~~~~~ 168 (393)
+-|.|-..=....-++.|.|..+-+|..+|+--....... .+..+| ..|+ =|+..-+....++....
T Consensus 31 GYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~-----d~~yvWGGRND~egaCN 105 (392)
T KOG4693|consen 31 GYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ-----DKAYVWGGRNDDEGACN 105 (392)
T ss_pred CcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEc-----ceEEEEcCccCcccccc
Confidence 3455554433345579999999999999998320011111 111111 1121 13433333333334556
Q ss_pred EEEEEEeCCCCeEEcc---ccCcccccccccccccccccCceeEeCceEEEeccC----CCCCcEEEEEECCCceeeeec
Q 046902 169 EVEVYSLKTNSWRRIS---NLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK----SSTRSVIVAFDLVAEEFYQLP 241 (393)
Q Consensus 169 ~~~Vyss~t~~W~~~~---~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~----~~~~~~il~fD~~~e~~~~i~ 241 (393)
...-|+.+++.|...+ .+| ..+...++++++..+|-+++. .....-+.+||+.+++|+.+.
T Consensus 106 ~Ly~fDp~t~~W~~p~v~G~vP------------gaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~ 173 (392)
T KOG4693|consen 106 LLYEFDPETNVWKKPEVEGFVP------------GARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMH 173 (392)
T ss_pred eeeeeccccccccccceeeecC------------CccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehh
Confidence 7788999999998764 234 234566778899999998764 223356999999999999974
Q ss_pred ---CCCcccccCCceeEEEEEeCCeEEEEEEcCCC-----------eEEEEEEeecCCCCCeEEEEEeeCCCCCCCccee
Q 046902 242 ---LPDSVNVSYANVHVDVGSLEGCLCVFRFYNLV-----------YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFL 307 (393)
Q Consensus 242 ---lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~-----------~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~ 307 (393)
.|+.-. .++ ...+++|..++++...+. .-.|=.|+- ..+.|..-..-.... .+. +-.
T Consensus 174 Tkg~PprwR----DFH-~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~--~T~aW~r~p~~~~~P-~GR-RSH 244 (392)
T KOG4693|consen 174 TKGDPPRWR----DFH-TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL--ATGAWTRTPENTMKP-GGR-RSH 244 (392)
T ss_pred ccCCCchhh----hhh-hhhhccceEEEeccccccCCCccchhhhhcceeEEEec--cccccccCCCCCcCC-Ccc-ccc
Confidence 455432 222 456678999998764321 223334442 145687642221110 000 011
Q ss_pred eEEEEEeCCcEEEEEEcC-------cEEEEEECCCCcEEEEEEecCCC
Q 046902 308 RPLGYSRNGVKLLLEVRR-------EKLVWFDLETNSLRTVKIDTHGL 348 (393)
Q Consensus 308 ~~~~~~~~g~~i~l~~~~-------~~l~~yd~~t~~~~~v~~~~~~~ 348 (393)
. .+.-||...++.... +.|+.||++|..|..|.. .|.
T Consensus 245 S--~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~--~Gk 288 (392)
T KOG4693|consen 245 S--TFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV--RGK 288 (392)
T ss_pred c--eEEEcceEEEecccchhhhhhhcceeecccccchheeeec--cCC
Confidence 1 222266555554321 259999999999999987 553
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0003 Score=64.44 Aligned_cols=210 Identities=18% Similarity=0.155 Sum_probs=120.8
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEE-EeecCC----CCccEEEEEEeCCCCeEEcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVL-HFKGND----GDDVEVEVYSLKTNSWRRIS 184 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~~~~----~~~~~~~Vyss~t~~W~~~~ 184 (393)
..+|++|--+.+|+.+-.+. ... ..+.+.+...|+. .+..++ ...... +.-..+++|++.++.|..+.
T Consensus 98 ndLy~Yn~k~~eWkk~~spn--~P~--pRsshq~va~~s~---~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~ 170 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPN--APP--PRSSHQAVAVPSN---ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLE 170 (521)
T ss_pred eeeeEEeccccceeEeccCC--CcC--CCccceeEEeccC---eEEEeccccCCcchhhhhhhhheeeeeeccchheeec
Confidence 47999999999999875543 111 1222333334433 122222 111111 12345789999999999986
Q ss_pred c--cCcccccccccccccccccCceeEeCceEEEeccC-CCC-----CcEEEEEECCCceeeeecCCCcccccCCceeEE
Q 046902 185 N--LPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK-SST-----RSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVD 256 (393)
Q Consensus 185 ~--~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~-~~~-----~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~ 256 (393)
. .| ..++.++.|.....|.-+++- ... -+-+.+||+.+=+|+.+..+-. .. .....++
T Consensus 171 ~~g~P------------S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga-~P-tpRSGcq 236 (521)
T KOG1230|consen 171 FGGGP------------SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGA-GP-TPRSGCQ 236 (521)
T ss_pred cCCCC------------CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCC-CC-CCCCcce
Confidence 2 33 223344445544444443321 111 1358999999999999876432 11 1112235
Q ss_pred EEEe-CCeEEEEEEcC-----------CCeEEEEEEeecC---CCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEE
Q 046902 257 VGSL-EGCLCVFRFYN-----------LVYVDMWMMKEHA---VKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLL 321 (393)
Q Consensus 257 l~~~-~G~L~~~~~~~-----------~~~~~iW~l~~~~---~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l 321 (393)
+.+. +|.++|.+++. ...-++|.|+... ++-.|+++..+.... .++ ..--+++++++..+++
T Consensus 237 ~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kP-spR--sgfsv~va~n~kal~F 313 (521)
T KOG1230|consen 237 FSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKP-SPR--SGFSVAVAKNHKALFF 313 (521)
T ss_pred EEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCC-CCC--CceeEEEecCCceEEe
Confidence 5666 89998887642 1256899997432 134577776665532 112 2234667777777777
Q ss_pred EEc--------------CcEEEEEECCCCcEEEEEE
Q 046902 322 EVR--------------REKLVWFDLETNSLRTVKI 343 (393)
Q Consensus 322 ~~~--------------~~~l~~yd~~t~~~~~v~~ 343 (393)
..- .+.|+.||+..++|..-.+
T Consensus 314 GGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 314 GGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred cceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 531 0249999999999886654
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00027 Score=63.09 Aligned_cols=44 Identities=18% Similarity=0.108 Sum_probs=39.2
Q ss_pred CCCCc----HHHHHHHhccCCccceeeeeecccchhhhcCChHHHHHH
Q 046902 2 SKKIP----LDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLH 45 (393)
Q Consensus 2 ~~~LP----~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~ 45 (393)
+..|| +++.+.||+.|...+|+.|..|||+|+++++++..-+..
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 45789 999999999999999999999999999999998764443
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.021 Score=55.97 Aligned_cols=207 Identities=16% Similarity=0.071 Sum_probs=119.9
Q ss_pred eEEEEeccccceeccCCCCCCCCCC-CCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 111 ELALFNPSTRKLKTLPLPPCLVGFP-SAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 111 ~~~V~NP~T~~~~~LP~~~~~~~~~-~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
+++|+|--+..|........ ...+ .....++++ =+++.++...........++.|+..|+.|+.+.....
T Consensus 89 dl~~~d~~~~~w~~~~~~g~-~p~~r~g~~~~~~~-------~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~- 159 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGD-EPSPRYGHSLSAVG-------DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGD- 159 (482)
T ss_pred eeEEeecCCcccccccccCC-CCCcccceeEEEEC-------CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCC-
Confidence 59999999988887654330 1111 122222222 2444444322211134578999999999998753220
Q ss_pred cccccccccccccccCceeEeCceEEEeccCC---CCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS---STRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCV 266 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~---~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~ 266 (393)
....+..+..+.++.++|.+++.. .....+.+||+++.+|..+......- .......+++.++++++
T Consensus 160 --------~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P--~pR~gH~~~~~~~~~~v 229 (482)
T KOG0379|consen 160 --------PPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAP--SPRYGHAMVVVGNKLLV 229 (482)
T ss_pred --------CCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCC--CCCCCceEEEECCeEEE
Confidence 012234566677888888887652 23468999999999999976432221 12223477888999999
Q ss_pred EEEcC-CC--eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEE-EEc-------CcEEEEEECCC
Q 046902 267 FRFYN-LV--YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLL-EVR-------REKLVWFDLET 335 (393)
Q Consensus 267 ~~~~~-~~--~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l-~~~-------~~~l~~yd~~t 335 (393)
+.... .. -=++|.|+-. ...|.++....- .+..+......+. |+.+++ ... -..++.||+++
T Consensus 230 ~gG~~~~~~~l~D~~~ldl~--~~~W~~~~~~g~---~p~~R~~h~~~~~--~~~~~l~gG~~~~~~~~l~~~~~l~~~~ 302 (482)
T KOG0379|consen 230 FGGGDDGDVYLNDVHILDLS--TWEWKLLPTGGD---LPSPRSGHSLTVS--GDHLLLFGGGTDPKQEPLGDLYGLDLET 302 (482)
T ss_pred EeccccCCceecceEeeecc--cceeeeccccCC---CCCCcceeeeEEE--CCEEEEEcCCcccccccccccccccccc
Confidence 88654 22 3478999852 256764332221 1111122233333 334444 321 12488899999
Q ss_pred CcEEEEEE
Q 046902 336 NSLRTVKI 343 (393)
Q Consensus 336 ~~~~~v~~ 343 (393)
+.|..+.-
T Consensus 303 ~~w~~~~~ 310 (482)
T KOG0379|consen 303 LVWSKVES 310 (482)
T ss_pred cceeeeec
Confidence 99998854
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0089 Score=58.57 Aligned_cols=180 Identities=18% Similarity=0.102 Sum_probs=106.9
Q ss_pred eeeeceEEEeeCC------ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEE
Q 046902 97 GSCNGLIALCNSV------QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEV 170 (393)
Q Consensus 97 ~s~~GLl~~~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~ 170 (393)
+..+.|+++.... ..+..+|+.|++|..+.+.. . .+.....+.+..+. =||+.++...........+
T Consensus 120 ~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~--~-~P~~r~~Hs~~~~g----~~l~vfGG~~~~~~~~ndl 192 (482)
T KOG0379|consen 120 AVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTG--D-PPPPRAGHSATVVG----TKLVVFGGIGGTGDSLNDL 192 (482)
T ss_pred EECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcC--C-CCCCcccceEEEEC----CEEEEECCccCcccceeee
Confidence 3335566665533 27999999999999987655 1 11111122222111 1555554432222245679
Q ss_pred EEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCC-C--CCcEEEEEECCCceeeeecCCCccc
Q 046902 171 EVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS-S--TRSVIVAFDLVAEEFYQLPLPDSVN 247 (393)
Q Consensus 171 ~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~-~--~~~~il~fD~~~e~~~~i~lP~~~~ 247 (393)
+||+..+.+|..+..... ....+..+..+.+++.++-+.+.. . .-.-+..||+.+.+|..+. +....
T Consensus 193 ~i~d~~~~~W~~~~~~g~---------~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~-~~g~~ 262 (482)
T KOG0379|consen 193 HIYDLETSTWSELDTQGE---------APSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP-TGGDL 262 (482)
T ss_pred eeeccccccceecccCCC---------CCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeecc-ccCCC
Confidence 999999999999863221 012233455567777777766542 1 2246999999999998432 11111
Q ss_pred ccCCceeEEEEEeCCeEEEEEEcCC----CeEEEEEEeecCCCCCeEEEEEee
Q 046902 248 VSYANVHVDVGSLEGCLCVFRFYNL----VYVDMWMMKEHAVKESWTKLFSVQ 296 (393)
Q Consensus 248 ~~~~~~~~~l~~~~G~L~~~~~~~~----~~~~iW~l~~~~~~~~W~~~~~i~ 296 (393)
. .......++..+..+++++.... .--++|.|+.. ...|.++....
T Consensus 263 p-~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~--~~~w~~~~~~~ 312 (482)
T KOG0379|consen 263 P-SPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLE--TLVWSKVESVG 312 (482)
T ss_pred C-CCcceeeeEEECCEEEEEcCCccccccccccccccccc--ccceeeeeccc
Confidence 0 12234466678888888886644 24467888753 46799987776
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0013 Score=56.84 Aligned_cols=158 Identities=16% Similarity=0.240 Sum_probs=93.7
Q ss_pred eEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccc--cCc
Q 046902 111 ELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISN--LPR 188 (393)
Q Consensus 111 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~--~p~ 188 (393)
-++-++|-|.+|.+---............++.+| +...|+.-.. ...+.....+++++..|-.|+.+.. .|+
T Consensus 106 ~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g-----n~MyiFGGye-~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pp 179 (392)
T KOG4693|consen 106 LLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG-----NQMYIFGGYE-EDAQRFSQDTHVLDFATMTWREMHTKGDPP 179 (392)
T ss_pred eeeeeccccccccccceeeecCCccCCceeeEEC-----cEEEEecChH-HHHHhhhccceeEeccceeeeehhccCCCc
Confidence 4788899999998622110000011123333333 2222222111 0011134567888999999999853 231
Q ss_pred ccccccccccccccccCceeEeCceEEEeccCC---------C--CCcEEEEEECCCceeeeec----CCCcccccCCce
Q 046902 189 FLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS---------S--TRSVIVAFDLVAEEFYQLP----LPDSVNVSYANV 253 (393)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~---------~--~~~~il~fD~~~e~~~~i~----lP~~~~~~~~~~ 253 (393)
.-+....++.++|.+|-+++.. . -...|++||+.++.|...+ +|.+. .
T Consensus 180 -----------rwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GR------R 242 (392)
T KOG4693|consen 180 -----------RWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGR------R 242 (392)
T ss_pred -----------hhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcc------c
Confidence 1124566788899999998651 1 1257999999999998752 23222 1
Q ss_pred eEEEEEeCCeEEEEEEcCCC----eEEEEEEeecCCCCCeEEEE
Q 046902 254 HVDVGSLEGCLCVFRFYNLV----YVDMWMMKEHAVKESWTKLF 293 (393)
Q Consensus 254 ~~~l~~~~G~L~~~~~~~~~----~~~iW~l~~~~~~~~W~~~~ 293 (393)
....-+.+|++++++.+... --++|..+- ....|.++.
T Consensus 243 SHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP--~t~~W~~I~ 284 (392)
T KOG4693|consen 243 SHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP--KTSMWSVIS 284 (392)
T ss_pred ccceEEEcceEEEecccchhhhhhhcceeeccc--ccchheeee
Confidence 23667899999999876431 347888874 246798764
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.27 E-value=5e-05 Score=66.92 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=36.3
Q ss_pred CCCCcHHHHHHHhccCCccceeeeeecccchhhhcCChH
Q 046902 2 SKKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQD 40 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~ 40 (393)
+.+|||||++.||+.||.|+|++...|||+|+++.++.+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 468999999999999999999999999999999988765
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.048 Score=50.46 Aligned_cols=149 Identities=14% Similarity=0.156 Sum_probs=91.7
Q ss_pred EEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeC-ceEEEeccC--CCC------CcEEEEEECCCceeee
Q 046902 169 EVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAG-GALHWVSPK--SST------RSVIVAFDLVAEEFYQ 239 (393)
Q Consensus 169 ~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~-G~lyw~~~~--~~~------~~~il~fD~~~e~~~~ 239 (393)
.+.+|+.+++.|+.+.... ....+.....|.+- |.+|.++++ +.+ .--+-.||+.+.+|..
T Consensus 99 dLy~Yn~k~~eWkk~~spn----------~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweq 168 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPN----------APPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQ 168 (521)
T ss_pred eeeEEeccccceeEeccCC----------CcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchhee
Confidence 4678999999999886422 11223344455544 766655554 111 1237899999999999
Q ss_pred ecCCCcccccCCceeEEEEEeCCeEEEEEEcCC-C-----eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEE
Q 046902 240 LPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNL-V-----YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYS 313 (393)
Q Consensus 240 i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~-~-----~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~ 313 (393)
+.++.+.. ......++....+|.++++..+ + --+||..+-+ ...|.++.. +- ..+..+-.+-+.+.
T Consensus 169 l~~~g~PS---~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLd--tykW~Klep-sg--a~PtpRSGcq~~vt 240 (521)
T KOG1230|consen 169 LEFGGGPS---PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLD--TYKWSKLEP-SG--AGPTPRSGCQFSVT 240 (521)
T ss_pred eccCCCCC---CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecc--ceeeeeccC-CC--CCCCCCCcceEEec
Confidence 99887553 2223478888999999875422 1 2367887642 467999765 21 11111122345667
Q ss_pred eCCcEEEEEEcC--------------cEEEEEECCC
Q 046902 314 RNGVKLLLEVRR--------------EKLVWFDLET 335 (393)
Q Consensus 314 ~~g~~i~l~~~~--------------~~l~~yd~~t 335 (393)
++|++|+..... ..++..++++
T Consensus 241 pqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 241 PQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred CCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCc
Confidence 777777765321 1489999988
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.57 Score=46.51 Aligned_cols=236 Identities=17% Similarity=0.127 Sum_probs=117.0
Q ss_pred CCCCcHHHHHHHhccCCccceeeeeecccchhhhcCChHHHHHHHhcc-cCCCC--ceEEEeecC-----C-CeeeecCC
Q 046902 2 SKKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHS-ITTRS--NRRLILKGA-----H-DLYALDFD 72 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~~~~~-~~~~~--~~~~~~~~~-----~-~~~~~~~~ 72 (393)
+..||.++...||..|+.++++++++||+.|+.++.+........... ....+ ....-.... + .++.-.+
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~~~~- 186 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYRRRF- 186 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhhhhhh-
Confidence 567999999999999999999999999999999999877655332222 11100 000000000 0 0010000
Q ss_pred CCCCCCcccccC----CCCCC--CCccEEeeeeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeee
Q 046902 73 TLTLGTGVQPHH----HPLNI--GSGTEVLGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQD 146 (393)
Q Consensus 73 ~~~~~~~~~~~~----~p~~~--~~~~~~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d 146 (393)
..... +.... ..+.. ...+....-..|.+........+.+|+..+++...-+... . ....-++.+.
T Consensus 187 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G----H--~g~V~~l~~~ 258 (537)
T KOG0274|consen 187 RLSKN--WRKLFRRGYKVLLGTDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVG----H--FGGVWGLAFP 258 (537)
T ss_pred hcccc--ccccccccceeecccCcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccC----C--CCCceeEEEe
Confidence 00000 00000 00000 1111111122444444434455679999999876653322 1 2223344444
Q ss_pred CCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcE
Q 046902 147 KINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSV 226 (393)
Q Consensus 147 ~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~ 226 (393)
. .+.+++-.. ....+.|.+..+|.=..+- . ++. .....+... ..+-.+ +...+.
T Consensus 259 ~--~~~~lvsgS-------~D~t~rvWd~~sg~C~~~l--~----------gh~--stv~~~~~~-~~~~~s--gs~D~t 312 (537)
T KOG0274|consen 259 S--GGDKLVSGS-------TDKTERVWDCSTGECTHSL--Q----------GHT--SSVRCLTID-PFLLVS--GSRDNT 312 (537)
T ss_pred c--CCCEEEEEe-------cCCcEEeEecCCCcEEEEe--c----------CCC--ceEEEEEcc-CceEee--ccCCce
Confidence 3 445655443 2345666666665432221 0 000 000111121 222222 224578
Q ss_pred EEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEe
Q 046902 227 IVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMK 281 (393)
Q Consensus 227 il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~ 281 (393)
|.++|+.+...-.+. .+.. ...-+.+++.+.+.+..+. .+.||-..
T Consensus 313 VkVW~v~n~~~l~l~~~h~~--------~V~~v~~~~~~lvsgs~d~-~v~VW~~~ 359 (537)
T KOG0274|consen 313 VKVWDVTNGACLNLLRGHTG--------PVNCVQLDEPLLVSGSYDG-TVKVWDPR 359 (537)
T ss_pred EEEEeccCcceEEEeccccc--------cEEEEEecCCEEEEEecCc-eEEEEEhh
Confidence 999999977765543 2222 2234555677777776666 89999765
|
|
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.001 Score=59.09 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=40.6
Q ss_pred CCCCcHHHHHHHhccCC-----ccceeeeeecccchhhhcCChHHHHHHHhc
Q 046902 2 SKKIPLDIITGIFCRQP-----VKSLLRFRCVSKTCCSLIDSQDFIKLHLNH 48 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP-----~~sl~r~r~VcK~W~~li~s~~F~~~~~~~ 48 (393)
|..||+|++.+||.++= ..+|.++.+|||.|+-...+|+|-+..+..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~K 158 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLK 158 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHH
Confidence 46799999999999864 489999999999999999999997766543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.85 Score=40.31 Aligned_cols=202 Identities=17% Similarity=0.162 Sum_probs=108.0
Q ss_pred eeeceEEEee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeC
Q 046902 98 SCNGLIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLK 176 (393)
Q Consensus 98 s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~ 176 (393)
..+|-|++.+ ....++.++|.+++...+..+. ..++.++...+. ++... .....+++..
T Consensus 9 ~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----------~~G~~~~~~~g~--l~v~~--------~~~~~~~d~~ 68 (246)
T PF08450_consen 9 PRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----------PNGMAFDRPDGR--LYVAD--------SGGIAVVDPD 68 (246)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----------EEEEEEECTTSE--EEEEE--------TTCEEEEETT
T ss_pred CCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----------CceEEEEccCCE--EEEEE--------cCceEEEecC
Confidence 3366666666 4568999999999876544332 356666633332 22222 2345667999
Q ss_pred CCCeEEccccCcccccccccccccccccCceeEeCceEEEeccC---CCCC--cEEEEEECCCceeeee----cCCCccc
Q 046902 177 TNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK---SSTR--SVIVAFDLVAEEFYQL----PLPDSVN 247 (393)
Q Consensus 177 t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~---~~~~--~~il~fD~~~e~~~~i----~lP~~~~ 247 (393)
++.++.+...+... ........-.+--+|.+|.-... .... ..|..+|.. .+...+ ..|..
T Consensus 69 ~g~~~~~~~~~~~~-------~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNG-- 138 (246)
T PF08450_consen 69 TGKVTVLADLPDGG-------VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNG-- 138 (246)
T ss_dssp TTEEEEEEEEETTC-------SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEE--
T ss_pred CCcEEEEeeccCCC-------cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccc--
Confidence 99998876542100 01111222234567887776543 1111 579999999 554443 22221
Q ss_pred ccCCceeEEEEEeCCe-EEEEEEcCCCeEEEEEEeecCCCCCeEEEEEe-eCCCCCCCcceeeEEEEEeCCcEEEEE-Ec
Q 046902 248 VSYANVHVDVGSLEGC-LCVFRFYNLVYVDMWMMKEHAVKESWTKLFSV-QEPTPTRSFLFLRPLGYSRNGVKLLLE-VR 324 (393)
Q Consensus 248 ~~~~~~~~~l~~~~G~-L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i-~~~~~~~~~~~~~~~~~~~~g~~i~l~-~~ 324 (393)
+. ..-+|+ |++...... . ||+++-......+.....+ .+... .....-+++..+|+ |++. ..
T Consensus 139 -------i~-~s~dg~~lyv~ds~~~-~--i~~~~~~~~~~~~~~~~~~~~~~~~---~g~pDG~~vD~~G~-l~va~~~ 203 (246)
T PF08450_consen 139 -------IA-FSPDGKTLYVADSFNG-R--IWRFDLDADGGELSNRRVFIDFPGG---PGYPDGLAVDSDGN-LWVADWG 203 (246)
T ss_dssp -------EE-EETTSSEEEEEETTTT-E--EEEEEEETTTCCEEEEEEEEE-SSS---SCEEEEEEEBTTS--EEEEEET
T ss_pred -------eE-ECCcchheeecccccc-e--eEEEeccccccceeeeeeEEEcCCC---CcCCCcceEcCCCC-EEEEEcC
Confidence 11 223554 566554433 3 6666643322335544333 33221 11234466666776 5555 34
Q ss_pred CcEEEEEECCCCcEEEEEEe
Q 046902 325 REKLVWFDLETNSLRTVKID 344 (393)
Q Consensus 325 ~~~l~~yd~~t~~~~~v~~~ 344 (393)
..++..||++.+.+..|.++
T Consensus 204 ~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 204 GGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp TTEEEEEETTSCEEEEEE-S
T ss_pred CCEEEEECCCccEEEEEcCC
Confidence 56899999998878888773
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.69 Score=41.02 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=80.4
Q ss_pred ccCceeEeCceEEEeccCCCCCcEEEEEECCCceee-eecCCCccccc------CCceeEEEEEeCCeEEEEEEcCCC--
Q 046902 203 RKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFY-QLPLPDSVNVS------YANVHVDVGSLEGCLCVFRFYNLV-- 273 (393)
Q Consensus 203 ~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~~------~~~~~~~l~~~~G~L~~~~~~~~~-- 273 (393)
.....|+.||.+|+.... ...|+.||+.+++-. ...+|...... .....+.+++.+..|.++......
T Consensus 70 ~GtG~vVYngslYY~~~~---s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g 146 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKYN---SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG 146 (250)
T ss_pred ccCCeEEECCcEEEEecC---CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC
Confidence 345568899999999653 578999999999988 77888765320 112246889999999999865432
Q ss_pred eEEEEEEeecC--CCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-c----CcEEEEEECCCCcEEEEEEe
Q 046902 274 YVDMWMMKEHA--VKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-R----REKLVWFDLETNSLRTVKID 344 (393)
Q Consensus 274 ~~~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~----~~~l~~yd~~t~~~~~v~~~ 344 (393)
.+.|-.|+... ..+.|..-+ . . ... .. +|.-.| +++... . ..--+.||+.+++-+.+.|+
T Consensus 147 ~ivvskld~~tL~v~~tw~T~~--~--k--~~~--~n--aFmvCG-vLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 147 NIVVSKLDPETLSVEQTWNTSY--P--K--RSA--GN--AFMVCG-VLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred cEEEEeeCcccCceEEEEEecc--C--c--hhh--cc--eeeEee-EEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 58888887532 234565321 1 1 010 11 111123 344332 1 22467899999988877764
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.046 Score=35.05 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=31.9
Q ss_pred cCceeEeCceEEEeccCCC---CCcEEEEEECCCceeeeec-CC
Q 046902 204 KGYGVLAGGALHWVSPKSS---TRSVIVAFDLVAEEFYQLP-LP 243 (393)
Q Consensus 204 ~~~~v~~~G~lyw~~~~~~---~~~~il~fD~~~e~~~~i~-lP 243 (393)
....|.++|.||.+++... ....+..||+++.+|+.++ +|
T Consensus 4 ~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred cCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 3456889999999987632 2468999999999999984 44
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.48 Score=41.87 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=77.6
Q ss_pred ccCceeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccc----c--CCceeEEEEEeCCeEEEEEEcCC--C
Q 046902 203 RKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNV----S--YANVHVDVGSLEGCLCVFRFYNL--V 273 (393)
Q Consensus 203 ~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~----~--~~~~~~~l~~~~G~L~~~~~~~~--~ 273 (393)
.....|+.||.+|+.... ...|+.||+.+++... -.+|..... . .....+.|++.+..|.++..... .
T Consensus 75 ~GtG~VVYngslYY~~~~---s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g 151 (255)
T smart00284 75 QGTGVVVYNGSLYFNKFN---SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG 151 (255)
T ss_pred ccccEEEECceEEEEecC---CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC
Confidence 355679999999997543 4679999999999864 457753211 0 11224689999999999876532 3
Q ss_pred eEEEEEEeecC--CCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-----cCcEEEEEECCCCcEEEEEEe
Q 046902 274 YVDMWMMKEHA--VKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-----RREKLVWFDLETNSLRTVKID 344 (393)
Q Consensus 274 ~~~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-----~~~~l~~yd~~t~~~~~v~~~ 344 (393)
.|.|-.|+... ..+.|..-+ + .... .. +|.-.| +++... ..+--+.||..|++-+.+.|+
T Consensus 152 ~ivvSkLnp~tL~ve~tW~T~~--~----k~sa--~n--aFmvCG-vLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~ 218 (255)
T smart00284 152 KIVISKLNPATLTIENTWITTY--N----KRSA--SN--AFMICG-ILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP 218 (255)
T ss_pred CEEEEeeCcccceEEEEEEcCC--C----cccc--cc--cEEEee-EEEEEccCCCCCcEEEEEEECCCCccceeeee
Confidence 78888887532 234565421 1 1111 01 111123 344332 123477899999887777664
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=94.72 E-value=2.1 Score=40.06 Aligned_cols=156 Identities=20% Similarity=0.189 Sum_probs=84.1
Q ss_pred cEEeeeeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCC-C---cc
Q 046902 93 TEVLGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDG-D---DV 168 (393)
Q Consensus 93 ~~~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~-~---~~ 168 (393)
..+++..+.-|++.+...+..|+++.|+....+|.+.. .......+.+| + +|.++........ . ..
T Consensus 69 ~~F~al~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~---pk~~pisv~VG-----~--~LY~m~~~~~~~~~~~~~~~ 138 (342)
T PF07893_consen 69 MDFFALHGSKIVAVDQSGRTLVYDTDTRAVATGPRLHS---PKRCPISVSVG-----D--KLYAMDRSPFPEPAGRPDFP 138 (342)
T ss_pred eEEEEecCCeEEEEcCCCCeEEEECCCCeEeccCCCCC---CCcceEEEEeC-----C--eEEEeeccCccccccCccce
Confidence 34444445555555555779999999999999998761 11112222222 2 3555554322111 1 01
Q ss_pred EEEEE--Ee--------CCCCeEEccccCccccccccccccccc------ccCceeEeCceEEEeccCCCCCcEEEEEEC
Q 046902 169 EVEVY--SL--------KTNSWRRISNLPRFLRDFYDYLYHSLF------RKGYGVLAGGALHWVSPKSSTRSVIVAFDL 232 (393)
Q Consensus 169 ~~~Vy--ss--------~t~~W~~~~~~p~~~~~~~~~~~~~~~------~~~~~v~~~G~lyw~~~~~~~~~~il~fD~ 232 (393)
.+|++ +. .+-+|+.++.+| . .... ....+|+ +|.--|++.... ...-.+||+
T Consensus 139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~PP-f---------~~~~~~~~~~i~sYavv-~g~~I~vS~~~~-~~GTysfDt 206 (342)
T PF07893_consen 139 CFEALVYRPPPDDPSPEESWSWRSLPPPP-F---------VRDRRYSDYRITSYAVV-DGRTIFVSVNGR-RWGTYSFDT 206 (342)
T ss_pred eEEEeccccccccccCCCcceEEcCCCCC-c---------cccCCcccceEEEEEEe-cCCeEEEEecCC-ceEEEEEEc
Confidence 45555 31 123788876644 1 1111 2344555 888888854411 136899999
Q ss_pred CCceeeee---cCCCcccc-cCCceeEEEE--EeC--CeEEEEEEc
Q 046902 233 VAEEFYQL---PLPDSVNV-SYANVHVDVG--SLE--GCLCVFRFY 270 (393)
Q Consensus 233 ~~e~~~~i---~lP~~~~~-~~~~~~~~l~--~~~--G~L~~~~~~ 270 (393)
++.+|+.. .||-.... ........++ ..+ |.||.+...
T Consensus 207 ~~~~W~~~GdW~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~ 252 (342)
T PF07893_consen 207 ESHEWRKHGDWMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDVS 252 (342)
T ss_pred CCcceeeccceecCcCCccEECCCcCeEEEeccCCCCcEEEEEecc
Confidence 99999996 57865432 0111222333 334 477776643
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.1 Score=32.75 Aligned_cols=35 Identities=31% Similarity=0.646 Sum_probs=26.6
Q ss_pred EEEEEEEeecCCCCccEEEEEEeCCCCeEEccccC
Q 046902 153 KLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLP 187 (393)
Q Consensus 153 kVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p 187 (393)
+|+.++...........+++|+..+++|+.++.||
T Consensus 13 ~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 13 KIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 56666655443446788999999999999987765
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.8 Score=38.19 Aligned_cols=175 Identities=18% Similarity=0.154 Sum_probs=91.9
Q ss_pred ccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCC--ceeeeecCCC
Q 046902 167 DVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVA--EEFYQLPLPD 244 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~--e~~~~i~lP~ 244 (393)
.....+||+.+++++.+.... ... .....+.-||.+.-.++.......+-.|+..+ ......+.|.
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~t-----------d~F-CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~ 112 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQT-----------DTF-CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPN 112 (243)
T ss_pred eEEEEEEecCCCcEEeccCCC-----------CCc-ccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcc
Confidence 345678999999999875322 111 12234557888876666544445688888765 2222333443
Q ss_pred cccccCCceeEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCC-CCCeEEEEEeeCCCCCCCcceeeEE-EEEeCCcEEEE
Q 046902 245 SVNVSYANVHVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAV-KESWTKLFSVQEPTPTRSFLFLRPL-GYSRNGVKLLL 321 (393)
Q Consensus 245 ~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~-~~~~~g~~i~l 321 (393)
... ...++.....+ ||++.+++.......+.|=-+.... ...|........ .......|. .+.++|+ ||+
T Consensus 113 ~m~--~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~----~~~~nlYP~~~llPdG~-lFi 185 (243)
T PF07250_consen 113 DMQ--SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSD----TLPNNLYPFVHLLPDGN-LFI 185 (243)
T ss_pred ccc--CCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhc----cCccccCceEEEcCCCC-EEE
Confidence 332 34455555555 9999999877644555543221110 111211111110 011123454 4457876 555
Q ss_pred EEcCcEEEEEECCCCcE-EEEEEecCCCC-eeeeEEEEeccccCCC
Q 046902 322 EVRREKLVWFDLETNSL-RTVKIDTHGLD-FVDTEICMASLVPLSD 365 (393)
Q Consensus 322 ~~~~~~l~~yd~~t~~~-~~v~~~~~~~~-~~~~~~y~~SL~~~~~ 365 (393)
..+. .-..||.+++++ +.+ ...| ..+.++...|-|-++.
T Consensus 186 ~an~-~s~i~d~~~n~v~~~l----P~lPg~~R~YP~sgssvmLPl 226 (243)
T PF07250_consen 186 FANR-GSIIYDYKTNTVVRTL----PDLPGGPRNYPASGSSVMLPL 226 (243)
T ss_pred EEcC-CcEEEeCCCCeEEeeC----CCCCCCceecCCCcceEEecC
Confidence 4443 367789999976 444 3333 3445555655554443
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.11 Score=32.41 Aligned_cols=21 Identities=38% Similarity=0.732 Sum_probs=18.4
Q ss_pred ccEEEEEEeCCCCeEEccccC
Q 046902 167 DVEVEVYSLKTNSWRRISNLP 187 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p 187 (393)
...+++|++++++|+.++.++
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~ 34 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMP 34 (47)
T ss_pred eeeEEEECCCCCeEccCCCCC
Confidence 457899999999999988777
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.15 Score=32.00 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=30.3
Q ss_pred cCceeEeCceEEEeccCC---CCCcEEEEEECCCceeeeec
Q 046902 204 KGYGVLAGGALHWVSPKS---STRSVIVAFDLVAEEFYQLP 241 (393)
Q Consensus 204 ~~~~v~~~G~lyw~~~~~---~~~~~il~fD~~~e~~~~i~ 241 (393)
....+.++|.+|.+++.. .....+..||+.+.+|..++
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred cCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 345688999999998762 23368999999999999873
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=93.81 E-value=4.1 Score=35.40 Aligned_cols=194 Identities=16% Similarity=0.133 Sum_probs=97.1
Q ss_pred eeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCC
Q 046902 99 CNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTN 178 (393)
Q Consensus 99 ~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~ 178 (393)
.+|.++.......++.+|+.|++...-...+ .... .. . .. .+-+|+... ....+..++..++
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~--~~~~-~~-~--~~-----~~~~v~v~~-------~~~~l~~~d~~tG 96 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLP--GPIS-GA-P--VV-----DGGRVYVGT-------SDGSLYALDAKTG 96 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECS--SCGG-SG-E--EE-----ETTEEEEEE-------TTSEEEEEETTTS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecc--cccc-ce-e--ee-----ccccccccc-------ceeeeEecccCCc
Confidence 6788877767788999999999854322222 0100 01 0 11 112333332 1126777776665
Q ss_pred --CeEE-ccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCce--eee-ecCCCcccc--cC
Q 046902 179 --SWRR-ISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEE--FYQ-LPLPDSVNV--SY 250 (393)
Q Consensus 179 --~W~~-~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~--~~~-i~lP~~~~~--~~ 250 (393)
.|+. ....+. ............++.+|..... ..|.++|+.+.+ |.. +..|..... ..
T Consensus 97 ~~~W~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 162 (238)
T PF13360_consen 97 KVLWSIYLTSSPP----------AGVRSSSSPAVDGDRLYVGTSS----GKLVALDPKTGKLLWKYPVGEPRGSSPISSF 162 (238)
T ss_dssp CEEEEEEE-SSCT----------CSTB--SEEEEETTEEEEEETC----SEEEEEETTTTEEEEEEESSTT-SS--EEEE
T ss_pred ceeeeeccccccc----------cccccccCceEecCEEEEEecc----CcEEEEecCCCcEEEEeecCCCCCCcceeee
Confidence 6883 432220 0111222334446667666533 689999998664 444 333332110 00
Q ss_pred CceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEE
Q 046902 251 ANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVW 330 (393)
Q Consensus 251 ~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ 330 (393)
......+...+|.+++...... .+.+ -++. ....|++. +.- .... ...+++.|++...+..++.
T Consensus 163 ~~~~~~~~~~~~~v~~~~~~g~-~~~~-d~~t--g~~~w~~~--~~~---------~~~~-~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 163 SDINGSPVISDGRVYVSSGDGR-VVAV-DLAT--GEKLWSKP--ISG---------IYSL-PSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp TTEEEEEECCTTEEEEECCTSS-EEEE-ETTT--TEEEEEEC--SS----------ECEC-EECCCTEEEEEETTTEEEE
T ss_pred cccccceEEECCEEEEEcCCCe-EEEE-ECCC--CCEEEEec--CCC---------ccCC-ceeeCCEEEEEeCCCEEEE
Confidence 1112344545776666654432 2332 2221 12236321 111 1111 2345678888876678999
Q ss_pred EECCCCcEEE
Q 046902 331 FDLETNSLRT 340 (393)
Q Consensus 331 yd~~t~~~~~ 340 (393)
+|++|++...
T Consensus 227 ~d~~tG~~~W 236 (238)
T PF13360_consen 227 LDLKTGKVVW 236 (238)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCCEEe
Confidence 9999998654
|
... |
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.11 Score=33.13 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=25.2
Q ss_pred EEEEEEEeecCCCCccEEEEEEeCCCCeEEccccC
Q 046902 153 KLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLP 187 (393)
Q Consensus 153 kVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p 187 (393)
+|..++...........+++|+.++++|+.++.+|
T Consensus 13 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 13 KIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 55555543321224578999999999999998877
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=92.77 E-value=5.5 Score=37.29 Aligned_cols=110 Identities=14% Similarity=0.149 Sum_probs=62.6
Q ss_pred cEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCC---------eEEEEEEee----cCCCCCeEE
Q 046902 225 SVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLV---------YVDMWMMKE----HAVKESWTK 291 (393)
Q Consensus 225 ~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~---------~~~iW~l~~----~~~~~~W~~ 291 (393)
...+.||.++...... |.... .......+..+|+||+....... .+++=.... ......|.-
T Consensus 86 ~~t~vyDt~t~av~~~--P~l~~---pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W 160 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATG--PRLHS---PKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSW 160 (342)
T ss_pred CCeEEEECCCCeEecc--CCCCC---CCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceE
Confidence 4589999988877744 43221 11122334458889998754211 333322221 112344543
Q ss_pred EEEeeCCCCCCCcce----eeEEEEEeCCcEEEEEEcCc--EEEEEECCCCcEEEE
Q 046902 292 LFSVQEPTPTRSFLF----LRPLGYSRNGVKLLLEVRRE--KLVWFDLETNSLRTV 341 (393)
Q Consensus 292 ~~~i~~~~~~~~~~~----~~~~~~~~~g~~i~l~~~~~--~l~~yd~~t~~~~~v 341 (393)
.. ++.+.+...... ..--++. +|..|++...+. .-+.||.++.+|+++
T Consensus 161 ~~-LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 161 RS-LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred Ec-CCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeec
Confidence 22 443333221111 3344556 788999987654 699999999999998
|
|
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.44 Score=30.24 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=30.7
Q ss_pred cCceeEeCceEEEeccC-----CCCCcEEEEEECCCceeeeecC
Q 046902 204 KGYGVLAGGALHWVSPK-----SSTRSVIVAFDLVAEEFYQLPL 242 (393)
Q Consensus 204 ~~~~v~~~G~lyw~~~~-----~~~~~~il~fD~~~e~~~~i~l 242 (393)
....+.++|+||.+++. ......+..||+++.+|+.++.
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 45578899999999865 2234679999999999998754
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.3 Score=35.03 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=53.2
Q ss_pred cEEEEEECCCc--eeeeecCCCccccc--------CCceeEEEEEeCCeEEEEEEcC---------CCeEEEEEEeec-C
Q 046902 225 SVIVAFDLVAE--EFYQLPLPDSVNVS--------YANVHVDVGSLEGCLCVFRFYN---------LVYVDMWMMKEH-A 284 (393)
Q Consensus 225 ~~il~fD~~~e--~~~~i~lP~~~~~~--------~~~~~~~l~~~~G~L~~~~~~~---------~~~~~iW~l~~~-~ 284 (393)
..|+.+|+-++ .++.++||...... .......+++.+|+|-++.... .-.+.+|+|... +
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 45888998865 67778998765321 0122347888999998887532 227899999974 2
Q ss_pred CCCCeEEEEEeeCCCC
Q 046902 285 VKESWTKLFSVQEPTP 300 (393)
Q Consensus 285 ~~~~W~~~~~i~~~~~ 300 (393)
....|++.+++....+
T Consensus 86 ~~~~W~~d~~v~~~di 101 (131)
T PF07762_consen 86 SSWEWKKDCEVDLSDI 101 (131)
T ss_pred CCCCEEEeEEEEhhhc
Confidence 2578999999987644
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.73 E-value=11 Score=34.75 Aligned_cols=146 Identities=14% Similarity=0.055 Sum_probs=86.6
Q ss_pred CcEEEEEECCCceeeee---cCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeC-CC
Q 046902 224 RSVIVAFDLVAEEFYQL---PLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQE-PT 299 (393)
Q Consensus 224 ~~~il~fD~~~e~~~~i---~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~-~~ 299 (393)
.+.|..||+........ .++++.. -+.-+..-+|+++++...-..++.+|..+.. .++-+.+.+|.. +.
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~G-----PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~--~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAG-----PRHIVFHPNGKYAYLVNELNSTVDVLEYNPA--VGKFEELQTIDTLPE 238 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCC-----cceEEEcCCCcEEEEEeccCCEEEEEEEcCC--CceEEEeeeeccCcc
Confidence 35677777776555442 3444432 1223445589998887766669999998863 244556655552 22
Q ss_pred CCCCcceeeEEEEEeCCcEEEEEEcCc---EEEEEECCCCcEEEEEE-ecCCC-CeeeeEEEEeccccCCCCCCCCCCCC
Q 046902 300 PTRSFLFLRPLGYSRNGVKLLLEVRRE---KLVWFDLETNSLRTVKI-DTHGL-DFVDTEICMASLVPLSDKGGGCGGGI 374 (393)
Q Consensus 300 ~~~~~~~~~~~~~~~~g~~i~l~~~~~---~l~~yd~~t~~~~~v~~-~~~~~-~~~~~~~y~~SL~~~~~~~~~~~~~~ 374 (393)
.+.......-+-+.++|..++.+.++. .++..|+.+++++.+.+ +.+|. |+...+...++++-. .+|+.+.|
T Consensus 239 dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia---a~q~sd~i 315 (346)
T COG2706 239 DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA---ANQKSDNI 315 (346)
T ss_pred ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE---EccCCCcE
Confidence 222223455677788988777765433 47778999999988854 33454 555555555555432 25555555
Q ss_pred Ccccc
Q 046902 375 NGMKR 379 (393)
Q Consensus 375 ~~~~~ 379 (393)
...++
T Consensus 316 ~vf~~ 320 (346)
T COG2706 316 TVFER 320 (346)
T ss_pred EEEEE
Confidence 44443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=91.60 E-value=13 Score=35.48 Aligned_cols=192 Identities=9% Similarity=0.099 Sum_probs=98.5
Q ss_pred eeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 98 SCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 98 s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
..+|.|.+...+..++..|+.|++.+.--..+ .... ....+ .+ + +|+... ..-.+..++..+
T Consensus 118 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~-ssP~v---~~----~-~v~v~~-------~~g~l~ald~~t 179 (394)
T PRK11138 118 VAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA--GEAL-SRPVV---SD----G-LVLVHT-------SNGMLQALNESD 179 (394)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCCcccccCC--Ccee-cCCEE---EC----C-EEEEEC-------CCCEEEEEEccC
Confidence 34677777666677899999998743311111 0000 00011 11 1 333221 123567778777
Q ss_pred C--CeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCce--eee-ecCCCccccc--C
Q 046902 178 N--SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEE--FYQ-LPLPDSVNVS--Y 250 (393)
Q Consensus 178 ~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~--~~~-i~lP~~~~~~--~ 250 (393)
| .|+.-...|. . .......++..+|.+|+-... ..+.++|..+.+ |+. +..|...... .
T Consensus 180 G~~~W~~~~~~~~---------~-~~~~~~sP~v~~~~v~~~~~~----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 180 GAVKWTVNLDVPS---------L-TLRGESAPATAFGGAIVGGDN----GRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CCEeeeecCCCCc---------c-cccCCCCCEEECCEEEEEcCC----CEEEEEEccCChhhheeccccCCCccchhcc
Confidence 6 4876543221 0 011234567788888886543 579999998754 543 2333221100 0
Q ss_pred CceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEE
Q 046902 251 ANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVW 330 (393)
Q Consensus 251 ~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ 330 (393)
......-+..+|.|++..... .+..++-...+..|.... . . ...|. + +++.||+...+..++.
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g----~l~ald~~tG~~~W~~~~--~--~------~~~~~-~--~~~~vy~~~~~g~l~a 308 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNG----NLVALDLRSGQIVWKREY--G--S------VNDFA-V--DGGRIYLVDQNDRVYA 308 (394)
T ss_pred cccCCCcEEECCEEEEEEcCC----eEEEEECCCCCEEEeecC--C--C------ccCcE-E--ECCEEEEEcCCCeEEE
Confidence 000112234578887766432 234444322245686531 1 1 01222 2 3567888777778999
Q ss_pred EECCCCcE
Q 046902 331 FDLETNSL 338 (393)
Q Consensus 331 yd~~t~~~ 338 (393)
+|.++++.
T Consensus 309 ld~~tG~~ 316 (394)
T PRK11138 309 LDTRGGVE 316 (394)
T ss_pred EECCCCcE
Confidence 99999864
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.47 E-value=13 Score=35.35 Aligned_cols=118 Identities=16% Similarity=0.233 Sum_probs=70.1
Q ss_pred eEeCce-EEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCcee-EEEEEeCCeEEEEEEcCCCeEEEEEEeecCC
Q 046902 208 VLAGGA-LHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVH-VDVGSLEGCLCVFRFYNLVYVDMWMMKEHAV 285 (393)
Q Consensus 208 v~~~G~-lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~-~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~ 285 (393)
..-+|. .-+.++ ...++.+||+.+.+...+..|.... ...+. +.+.. +|...++.+... .|.+=..+
T Consensus 265 f~p~G~~~i~~s~---rrky~ysyDle~ak~~k~~~~~g~e--~~~~e~FeVSh-d~~fia~~G~~G-~I~lLhak---- 333 (514)
T KOG2055|consen 265 FAPNGHSVIFTSG---RRKYLYSYDLETAKVTKLKPPYGVE--EKSMERFEVSH-DSNFIAIAGNNG-HIHLLHAK---- 333 (514)
T ss_pred ecCCCceEEEecc---cceEEEEeeccccccccccCCCCcc--cchhheeEecC-CCCeEEEcccCc-eEEeehhh----
Confidence 334565 333332 2468999999999999999887764 22222 22222 333333333322 55554433
Q ss_pred CCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEEEEEe
Q 046902 286 KESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKID 344 (393)
Q Consensus 286 ~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~v~~~ 344 (393)
...|..-..|.- ...-+.+..+|..|+.....+.++.+|+..+.......+
T Consensus 334 T~eli~s~KieG--------~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D 384 (514)
T KOG2055|consen 334 TKELITSFKIEG--------VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD 384 (514)
T ss_pred hhhhhheeeecc--------EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee
Confidence 234544444432 345566777887777776666899999999976655443
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=90.08 E-value=9.4 Score=36.94 Aligned_cols=90 Identities=19% Similarity=0.292 Sum_probs=50.4
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCe--EEcc---
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSW--RRIS--- 184 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W--~~~~--- 184 (393)
+++.|+|.+|+||. +|... -+.+.....+||.+|. -|+++++.-.+- ..+.=+.|.+...+| +.+.
T Consensus 57 DELHvYNTatnqWf-~Pavr--GDiPpgcAA~GfvcdG----trilvFGGMvEY--GkYsNdLYELQasRWeWkrlkp~~ 127 (830)
T KOG4152|consen 57 DELHVYNTATNQWF-APAVR--GDIPPGCAAFGFVCDG----TRILVFGGMVEY--GKYSNDLYELQASRWEWKRLKPKT 127 (830)
T ss_pred hhhhhhccccceee-cchhc--CCCCCchhhcceEecC----ceEEEEccEeee--ccccchHHHhhhhhhhHhhcCCCC
Confidence 57999999999997 55544 2333334455555553 266665532211 344556777777665 4442
Q ss_pred ---ccCcccccccccccccccccCceeEeCceEEEecc
Q 046902 185 ---NLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSP 219 (393)
Q Consensus 185 ---~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~ 219 (393)
..|++.+ ..++=+.++.+.|.+++
T Consensus 128 p~nG~pPCPR-----------lGHSFsl~gnKcYlFGG 154 (830)
T KOG4152|consen 128 PKNGPPPCPR-----------LGHSFSLVGNKCYLFGG 154 (830)
T ss_pred CCCCCCCCCc-----------cCceeEEeccEeEEecc
Confidence 2232221 22333456678888864
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.45 Score=30.10 Aligned_cols=35 Identities=14% Similarity=0.384 Sum_probs=18.5
Q ss_pred EEEEEEEeecCCCCccEEEEEEeCCCCeEEccccC
Q 046902 153 KLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLP 187 (393)
Q Consensus 153 kVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p 187 (393)
+|+.++...........+++|+..+++|+.++.+|
T Consensus 14 ~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 14 SIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred eEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 45555543332224457899999999999997666
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.54 E-value=3.4 Score=37.02 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=50.2
Q ss_pred CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEE
Q 046902 261 EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRT 340 (393)
Q Consensus 261 ~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~ 340 (393)
.+.|..+...+. .++||.+++.+.-.. +....+.. ..--++..++|.++|....++.+-.||+.+++...
T Consensus 39 ~~~~~~A~SWD~-tVR~wevq~~g~~~~---ka~~~~~~------PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 39 ADNLLAAGSWDG-TVRIWEVQNSGQLVP---KAQQSHDG------PVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ 108 (347)
T ss_pred cCceEEecccCC-ceEEEEEecCCcccc---hhhhccCC------CeEEEEEccCCceEEeeccCCceEEEEccCCCeee
Confidence 445555555555 999999998542111 11112111 11123455789999998877789999999999999
Q ss_pred EEEecCCCC
Q 046902 341 VKIDTHGLD 349 (393)
Q Consensus 341 v~~~~~~~~ 349 (393)
|.. +..|
T Consensus 109 v~~--Hd~p 115 (347)
T KOG0647|consen 109 VAA--HDAP 115 (347)
T ss_pred eee--cccc
Confidence 976 6555
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=88.81 E-value=8 Score=34.46 Aligned_cols=124 Identities=17% Similarity=0.268 Sum_probs=73.1
Q ss_pred EEeeeeeceEEEee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEE
Q 046902 94 EVLGSCNGLIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEV 172 (393)
Q Consensus 94 ~~~~s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~V 172 (393)
-+++.-+|-|-... ....+.-.||.++.-..+|.+. ..... . =...-|+... +.+.. ...-.+..
T Consensus 193 Gi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~--~~~~g-s--Rriwsdpig~----~witt-----wg~g~l~r 258 (353)
T COG4257 193 GICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPN--ALKAG-S--RRIWSDPIGR----AWITT-----WGTGSLHR 258 (353)
T ss_pred ceEECCCCcEEEEeccccceEEcccccCCcceecCCC--ccccc-c--cccccCccCc----EEEec-----cCCceeeE
Confidence 35566666665553 2345777899999777788776 11111 1 1233344322 22221 13567889
Q ss_pred EEeCCCCeEEccccCcccccccccccccccccCceeEeCc-eEEEeccCCCCCcEEEEEECCCceeeeecCCCcc
Q 046902 173 YSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSV 246 (393)
Q Consensus 173 yss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~ 246 (393)
|+..+.+|.+-. +|. .. ....+++++. -.-|+..- ....|..||.++++|+.+++|...
T Consensus 259 fdPs~~sW~eyp-LPg----------s~--arpys~rVD~~grVW~sea--~agai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 259 FDPSVTSWIEYP-LPG----------SK--ARPYSMRVDRHGRVWLSEA--DAGAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred eCcccccceeee-CCC----------CC--CCcceeeeccCCcEEeecc--ccCceeecCcccceEEEecCCCCC
Confidence 999999999764 331 11 1222344332 23455432 346899999999999999988654
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.65 E-value=20 Score=33.17 Aligned_cols=116 Identities=19% Similarity=0.283 Sum_probs=63.6
Q ss_pred CccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCce-EEEeccC-----CCCCcEEEEEECCCceeee
Q 046902 166 DDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPK-----SSTRSVIVAFDLVAEEFYQ 239 (393)
Q Consensus 166 ~~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~-----~~~~~~il~fD~~~e~~~~ 239 (393)
....+-+|++.++.|+.....| + .....+++...|. +-.+..+ ....-...-|.-...+|..
T Consensus 194 ~n~ev~sy~p~~n~W~~~G~~p----------f--~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~ 261 (381)
T COG3055 194 FNKEVLSYDPSTNQWRNLGENP----------F--YGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLK 261 (381)
T ss_pred ccccccccccccchhhhcCcCc----------c--cCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeee
Confidence 4557888999999999998777 1 1223344554444 3333332 1122345555566788988
Q ss_pred e-cCCCcccccCCce-eEEEEEeCCeEEEEEEc---------------CCC------eEEEEEEeecCCCCCeEEEEEee
Q 046902 240 L-PLPDSVNVSYANV-HVDVGSLEGCLCVFRFY---------------NLV------YVDMWMMKEHAVKESWTKLFSVQ 296 (393)
Q Consensus 240 i-~lP~~~~~~~~~~-~~~l~~~~G~L~~~~~~---------------~~~------~~~iW~l~~~~~~~~W~~~~~i~ 296 (393)
+ ++|.....+.... ...-+..+|.+-+.... ... +-+||.+++ .+|..+..++
T Consensus 262 l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~----g~Wk~~GeLp 337 (381)
T COG3055 262 LSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN----GSWKIVGELP 337 (381)
T ss_pred ccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC----CceeeecccC
Confidence 6 5665543100111 11223445555554321 011 457888873 6799888777
Q ss_pred C
Q 046902 297 E 297 (393)
Q Consensus 297 ~ 297 (393)
.
T Consensus 338 ~ 338 (381)
T COG3055 338 Q 338 (381)
T ss_pred C
Confidence 5
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=88.62 E-value=21 Score=33.36 Aligned_cols=175 Identities=14% Similarity=0.155 Sum_probs=90.8
Q ss_pred ceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCC--eEEccc--cCcccccccccccccccccCceeEeCce
Q 046902 138 FTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNS--WRRISN--LPRFLRDFYDYLYHSLFRKGYGVLAGGA 213 (393)
Q Consensus 138 ~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~--W~~~~~--~p~~~~~~~~~~~~~~~~~~~~v~~~G~ 213 (393)
...+.+.++|..+.. .+. .. ..-++.+|+...+. ...... +|.. ...++-...-+|.
T Consensus 144 ~h~H~v~~~pdg~~v-~v~--dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G-----------~GPRh~~f~pdg~ 204 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFV-YVP--DL-----GADRVYVYDIDDDTGKLTPVDSIKVPPG-----------SGPRHLAFSPDGK 204 (345)
T ss_dssp TCEEEEEE-TTSSEE-EEE--ET-----TTTEEEEEEE-TTS-TEEEEEEEECSTT-----------SSEEEEEE-TTSS
T ss_pred ccceeEEECCCCCEE-EEE--ec-----CCCEEEEEEEeCCCceEEEeeccccccC-----------CCCcEEEEcCCcC
Confidence 345567777764432 221 11 24578899887765 544321 2210 0011111223555
Q ss_pred EEEeccCCCCCcEEEEEECC--Cceeeee----cCCCcccccCCceeEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCC
Q 046902 214 LHWVSPKSSTRSVIVAFDLV--AEEFYQL----PLPDSVNVSYANVHVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVK 286 (393)
Q Consensus 214 lyw~~~~~~~~~~il~fD~~--~e~~~~i----~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~ 286 (393)
.-++..+ ....|.+|++. +..++.+ .+|.... .......+... +|+..++.....+.|.++.++.. .
T Consensus 205 ~~Yv~~e--~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~--~ 278 (345)
T PF10282_consen 205 YAYVVNE--LSNTVSVFDYDPSDGSLTEIQTISTLPEGFT--GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA--T 278 (345)
T ss_dssp EEEEEET--TTTEEEEEEEETTTTEEEEEEEEESCETTSC--SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT--T
T ss_pred EEEEecC--CCCcEEEEeecccCCceeEEEEeeecccccc--ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC--C
Confidence 4444433 24567777766 6666554 2554332 12122344444 67655555555559999998643 2
Q ss_pred CCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC-cEEEE--EECCCCcEEEEE
Q 046902 287 ESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR-EKLVW--FDLETNSLRTVK 342 (393)
Q Consensus 287 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-~~l~~--yd~~t~~~~~v~ 342 (393)
+.-+.+..++... ...+-+.+.++|+.+++.... +.+.. .|.+|++++.+.
T Consensus 279 g~l~~~~~~~~~G-----~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 279 GTLTLVQTVPTGG-----KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTEEEEEEEEESS-----SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CceEEEEEEeCCC-----CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 3455666665421 124556677899988887643 34554 477899988874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.46 E-value=24 Score=33.82 Aligned_cols=185 Identities=18% Similarity=0.222 Sum_probs=100.2
Q ss_pred eccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEE-ccccCccccccc
Q 046902 116 NPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRR-ISNLPRFLRDFY 194 (393)
Q Consensus 116 NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~-~~~~p~~~~~~~ 194 (393)
+|-++.|...-.++ ..........+.|.|..- |-+++. ...++.+|++.+.+=+. +..+.
T Consensus 8 t~e~~~w~~~~~~~---~~ke~~~vssl~fsp~~P-~d~aVt--------~S~rvqly~~~~~~~~k~~srFk------- 68 (487)
T KOG0310|consen 8 TPEIRYWRQETFPP---VHKEHNSVSSLCFSPKHP-YDFAVT--------SSVRVQLYSSVTRSVRKTFSRFK------- 68 (487)
T ss_pred Cccchhhhhhcccc---cccccCcceeEecCCCCC-CceEEe--------cccEEEEEecchhhhhhhHHhhc-------
Confidence 45556666654443 112233444566666532 332222 24689999998754322 21111
Q ss_pred ccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCce-eeee---cCCCcccccCCceeEEEEEeCCeEEEEEEc
Q 046902 195 DYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEE-FYQL---PLPDSVNVSYANVHVDVGSLEGCLCVFRFY 270 (393)
Q Consensus 195 ~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~-~~~i---~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~ 270 (393)
.. ...-.+..+|.+...+.. ...|-+||+.+.. .+.+ ..|... ......++.+.+.+.+
T Consensus 69 ----~~--v~s~~fR~DG~LlaaGD~---sG~V~vfD~k~r~iLR~~~ah~apv~~--------~~f~~~d~t~l~s~sD 131 (487)
T KOG0310|consen 69 ----DV--VYSVDFRSDGRLLAAGDE---SGHVKVFDMKSRVILRQLYAHQAPVHV--------TKFSPQDNTMLVSGSD 131 (487)
T ss_pred ----cc--eeEEEeecCCeEEEccCC---cCcEEEeccccHHHHHHHhhccCceeE--------EEecccCCeEEEecCC
Confidence 00 011123466999887554 5789999966522 1222 233222 2344557777766665
Q ss_pred CCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-cCcEEEEEECCCCcEEEEEEecCCCC
Q 046902 271 NLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-RREKLVWFDLETNSLRTVKIDTHGLD 349 (393)
Q Consensus 271 ~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~~~~l~~yd~~t~~~~~v~~~~~~~~ 349 (393)
+. ...+|.+.... + ...+.-.. +..+-..+.+..+.|++.. .++++-.||..+.+-..++++ +|.|
T Consensus 132 d~-v~k~~d~s~a~-----v-~~~l~~ht-----DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~p 198 (487)
T KOG0310|consen 132 DK-VVKYWDLSTAY-----V-QAELSGHT-----DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCP 198 (487)
T ss_pred Cc-eEEEEEcCCcE-----E-EEEecCCc-----ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCc
Confidence 54 89999988521 2 33333211 2345556666556677653 456899999999874444554 6665
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.87 E-value=5.2 Score=36.85 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=73.1
Q ss_pred cEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCc-eEEEeccCC-------------------------
Q 046902 168 VEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKS------------------------- 221 (393)
Q Consensus 168 ~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~------------------------- 221 (393)
..+..|++.+++|..++...+ .......++..++ .+|+...-.
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP-----------~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSP-----------TGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred eeeEEecCCCChhheeccccc-----------cccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 467899999999999874321 1123444566666 777776420
Q ss_pred -----------CCCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEEEEcC---CCeEEEEEEeecCCC
Q 046902 222 -----------STRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVFRFYN---LVYVDMWMMKEHAVK 286 (393)
Q Consensus 222 -----------~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~---~~~~~iW~l~~~~~~ 286 (393)
.....+++||+.+++|+..- .|-.... ....+.-+++|.++...- -++-.+|+.+-.+..
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~a-----Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~ 256 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNA-----GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDN 256 (381)
T ss_pred HHHhCCCHHHhcccccccccccccchhhhcCcCcccCcc-----CcceeecCCeEEEEcceecCCccccceeEEEeccCc
Confidence 12256999999999999984 6655431 123444566688887542 235566666644345
Q ss_pred CCeEEEEEeeCC
Q 046902 287 ESWTKLFSVQEP 298 (393)
Q Consensus 287 ~~W~~~~~i~~~ 298 (393)
..|.+....+.+
T Consensus 257 ~~w~~l~~lp~~ 268 (381)
T COG3055 257 LKWLKLSDLPAP 268 (381)
T ss_pred eeeeeccCCCCC
Confidence 789988666543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=87.81 E-value=24 Score=33.01 Aligned_cols=123 Identities=16% Similarity=0.169 Sum_probs=71.2
Q ss_pred CceEEEeccCCCCCcEEEEEECCCce--eee---ecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCC
Q 046902 211 GGALHWVSPKSSTRSVIVAFDLVAEE--FYQ---LPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAV 285 (393)
Q Consensus 211 ~G~lyw~~~~~~~~~~il~fD~~~e~--~~~---i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~ 285 (393)
+|...|...- ..+.|..|++..+. ... +.+|.... ..++. ..-+|+.+++.......+.+..++..
T Consensus 154 dg~~v~v~dl--G~D~v~~~~~~~~~~~l~~~~~~~~~~G~G----PRh~~-f~pdg~~~Yv~~e~s~~v~v~~~~~~-- 224 (345)
T PF10282_consen 154 DGRFVYVPDL--GADRVYVYDIDDDTGKLTPVDSIKVPPGSG----PRHLA-FSPDGKYAYVVNELSNTVSVFDYDPS-- 224 (345)
T ss_dssp TSSEEEEEET--TTTEEEEEEE-TTS-TEEEEEEEECSTTSS----EEEEE-E-TTSSEEEEEETTTTEEEEEEEETT--
T ss_pred CCCEEEEEec--CCCEEEEEEEeCCCceEEEeeccccccCCC----CcEEE-EcCCcCEEEEecCCCCcEEEEeeccc--
Confidence 4555555433 34678888887665 433 56666543 11222 22366555554444558888888732
Q ss_pred CCCeEEEEEeeCCCC-CCCcceeeEEEEEeCCcEEEEEEcC-cEEEEEEC--CCCcEEEEE
Q 046902 286 KESWTKLFSVQEPTP-TRSFLFLRPLGYSRNGVKLLLEVRR-EKLVWFDL--ETNSLRTVK 342 (393)
Q Consensus 286 ~~~W~~~~~i~~~~~-~~~~~~~~~~~~~~~g~~i~l~~~~-~~l~~yd~--~t~~~~~v~ 342 (393)
...++.+.++..... ........-+.++++|..+|+.... ..+..|++ ++++++.+.
T Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 225 DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE
T ss_pred CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE
Confidence 346888777775321 1111134557788899988887644 45777776 667888874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=87.81 E-value=25 Score=33.21 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=53.4
Q ss_pred eeceEEEeeCCceEEEEeccccceec---cCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEe
Q 046902 99 CNGLIALCNSVQELALFNPSTRKLKT---LPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSL 175 (393)
Q Consensus 99 ~~GLl~~~~~~~~~~V~NP~T~~~~~---LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss 175 (393)
.+|.|.+......++.+|+.|++... ++... . . +...+ +. +|+... ....+..++.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~-----~---~--~p~v~---~~-~v~v~~-------~~g~l~ald~ 122 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERL-----S---G--GVGAD---GG-LVFVGT-------EKGEVIALDA 122 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCc-----c---c--ceEEc---CC-EEEEEc-------CCCEEEEEEC
Confidence 36677666556678899999987442 22211 0 0 01111 11 232211 1235666776
Q ss_pred CCC--CeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCce
Q 046902 176 KTN--SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEE 236 (393)
Q Consensus 176 ~t~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~ 236 (393)
.++ .|+.-..-+ ....++..+|.+|..... ..|.++|..+.+
T Consensus 123 ~tG~~~W~~~~~~~---------------~~~~p~v~~~~v~v~~~~----g~l~a~d~~tG~ 166 (377)
T TIGR03300 123 EDGKELWRAKLSSE---------------VLSPPLVANGLVVVRTND----GRLTALDAATGE 166 (377)
T ss_pred CCCcEeeeeccCce---------------eecCCEEECCEEEEECCC----CeEEEEEcCCCc
Confidence 665 587532111 123456678888876443 579999997654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=87.71 E-value=13 Score=32.45 Aligned_cols=140 Identities=17% Similarity=0.201 Sum_probs=70.5
Q ss_pred EeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEe--CC--eEEEEEEc----CCCeEEEEEE
Q 046902 209 LAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSL--EG--CLCVFRFY----NLVYVDMWMM 280 (393)
Q Consensus 209 ~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~--~G--~L~~~~~~----~~~~~~iW~l 280 (393)
.+||-+ .+... ..+.+.|+.|+++..++.|+............++-. .+ ++..+... ....++|..+
T Consensus 3 sCnGLl-c~~~~----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~ 77 (230)
T TIGR01640 3 PCDGLI-CFSYG----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTL 77 (230)
T ss_pred ccceEE-EEecC----CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEe
Confidence 467877 34322 479999999999999986654210001101122211 12 12111111 1125666666
Q ss_pred eecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCc-----EEEEEECCCCcEEE-EEEecCCC-C--ee
Q 046902 281 KEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRRE-----KLVWFDLETNSLRT-VKIDTHGL-D--FV 351 (393)
Q Consensus 281 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~-----~l~~yd~~t~~~~~-v~~~~~~~-~--~~ 351 (393)
.. ++|..+... .... . .... ++.-+|.+.++..... .++.||+++++++. +..+.... . ..
T Consensus 78 ~~----~~Wr~~~~~-~~~~-~---~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~ 147 (230)
T TIGR01640 78 GS----NSWRTIECS-PPHH-P---LKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYL 147 (230)
T ss_pred CC----CCccccccC-CCCc-c---ccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccce
Confidence 53 479876522 1111 1 1111 4444665555543221 69999999999995 65531111 1 23
Q ss_pred eeEEEEeccccC
Q 046902 352 DTEICMASLVPL 363 (393)
Q Consensus 352 ~~~~y~~SL~~~ 363 (393)
....+...|.-+
T Consensus 148 ~L~~~~G~L~~v 159 (230)
T TIGR01640 148 SLINYKGKLAVL 159 (230)
T ss_pred EEEEECCEEEEE
Confidence 455555555443
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=87.56 E-value=18 Score=31.31 Aligned_cols=112 Identities=21% Similarity=0.196 Sum_probs=64.7
Q ss_pred eeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEe-ecC
Q 046902 207 GVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMK-EHA 284 (393)
Q Consensus 207 ~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~-~~~ 284 (393)
.+..+|.+|..... ..|.++|..+.+-.. ..++..... . ....+|.+++..... .|+.++ ..|
T Consensus 32 ~~~~~~~v~~~~~~----~~l~~~d~~tG~~~W~~~~~~~~~~--~-----~~~~~~~v~v~~~~~----~l~~~d~~tG 96 (238)
T PF13360_consen 32 AVPDGGRVYVASGD----GNLYALDAKTGKVLWRFDLPGPISG--A-----PVVDGGRVYVGTSDG----SLYALDAKTG 96 (238)
T ss_dssp EEEETTEEEEEETT----SEEEEEETTTSEEEEEEECSSCGGS--G-----EEEETTEEEEEETTS----EEEEEETTTS
T ss_pred EEEeCCEEEEEcCC----CEEEEEECCCCCEEEEeeccccccc--e-----eeeccccccccccee----eeEecccCCc
Confidence 44578888877433 689999987665332 344544321 1 366688887776322 566666 333
Q ss_pred CCCCeEE-EEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEE
Q 046902 285 VKESWTK-LFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRT 340 (393)
Q Consensus 285 ~~~~W~~-~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~ 340 (393)
+..|+. ...-+... ...+....-.++.+++...+..++.+|++|++...
T Consensus 97 -~~~W~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 97 -KVLWSIYLTSSPPAG------VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp -CEEEEEEE-SSCTCS------TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred -ceeeeeccccccccc------cccccCceEecCEEEEEeccCcEEEEecCCCcEEE
Confidence 456874 32211111 11111222236778888766789999999998643
|
... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=87.53 E-value=27 Score=33.30 Aligned_cols=108 Identities=17% Similarity=0.242 Sum_probs=59.7
Q ss_pred CceeEeCceEEEeccCCCCCcEEEEEECCCc--eeeeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEee
Q 046902 205 GYGVLAGGALHWVSPKSSTRSVIVAFDLVAE--EFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKE 282 (393)
Q Consensus 205 ~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e--~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~ 282 (393)
..++..+|.+|..... ..+.++|+.+. .|+. +++.. ..++..+|.||+..... . +..++-
T Consensus 250 ~sP~v~~~~vy~~~~~----g~l~ald~~tG~~~W~~-~~~~~---------~~~~~~~~~vy~~~~~g--~--l~ald~ 311 (394)
T PRK11138 250 TTPVVVGGVVYALAYN----GNLVALDLRSGQIVWKR-EYGSV---------NDFAVDGGRIYLVDQND--R--VYALDT 311 (394)
T ss_pred CCcEEECCEEEEEEcC----CeEEEEECCCCCEEEee-cCCCc---------cCcEEECCEEEEEcCCC--e--EEEEEC
Confidence 4567889999987644 57999999865 4654 22110 12344566777665332 2 222332
Q ss_pred cCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEE
Q 046902 283 HAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRT 340 (393)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~ 340 (393)
......|.... ..-. ....|+.. ++.|++...+..++.+|.+|++...
T Consensus 312 ~tG~~~W~~~~-~~~~------~~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 312 RGGVELWSQSD-LLHR------LLTAPVLY---NGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred CCCcEEEcccc-cCCC------cccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEE
Confidence 11123464311 0000 01334432 3577877777779999999987543
|
|
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=87.48 E-value=0.98 Score=28.60 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=23.8
Q ss_pred EEEEEEEe--ecCCCCccEEEEEEeCCCCeEEcccc
Q 046902 153 KLVRVLHF--KGNDGDDVEVEVYSLKTNSWRRISNL 186 (393)
Q Consensus 153 kVv~~~~~--~~~~~~~~~~~Vyss~t~~W~~~~~~ 186 (393)
|++.++.. .........+++|+.++.+|+.++.+
T Consensus 13 kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 13 KIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred EEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 66666554 12223567899999999999998754
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=87.44 E-value=1.2 Score=28.06 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=21.8
Q ss_pred CceeEe-CceEEEeccCC---CCCcEEEEEECCCceeeee
Q 046902 205 GYGVLA-GGALHWVSPKS---STRSVIVAFDLVAEEFYQL 240 (393)
Q Consensus 205 ~~~v~~-~G~lyw~~~~~---~~~~~il~fD~~~e~~~~i 240 (393)
..++.+ ++.+|.+++.. .....+..||+++++|+.+
T Consensus 5 h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 5 HSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp -EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 334555 57888887651 1234689999999999998
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=86.85 E-value=32 Score=33.52 Aligned_cols=186 Identities=13% Similarity=0.097 Sum_probs=96.6
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..++++|..|++...+...+ ... ....+.|..+ +++..... .....+.+++..++..+.+.....
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~------g~~--~~~~wSPDG~--~La~~~~~----~g~~~Iy~~dl~tg~~~~lt~~~~- 306 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFP------GIN--GAPRFSPDGK--KLALVLSK----DGQPEIYVVDIATKALTRITRHRA- 306 (448)
T ss_pred cEEEEEECCCCCeEEecCCC------CCc--CCeeECCCCC--EEEEEEeC----CCCeEEEEEECCCCCeEECccCCC-
Confidence 47999999998877665433 011 1244555433 23222211 123567788888888877643220
Q ss_pred cccccccccccccccCceeEeCc-eEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCe-EEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGC-LCVF 267 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~-L~~~ 267 (393)
........-+| .+++.... .....|..+|+.+.+...+...... ....... -+|+ |++.
T Consensus 307 ------------~~~~p~wSpDG~~I~f~s~~-~g~~~Iy~~dl~~g~~~~Lt~~g~~-----~~~~~~S-pDG~~l~~~ 367 (448)
T PRK04792 307 ------------IDTEPSWHPDGKSLIFTSER-GGKPQIYRVNLASGKVSRLTFEGEQ-----NLGGSIT-PDGRSMIMV 367 (448)
T ss_pred ------------CccceEECCCCCEEEEEECC-CCCceEEEEECCCCCEEEEecCCCC-----CcCeeEC-CCCCEEEEE
Confidence 00111122344 34444332 2335799999988877766432111 1111222 2554 4444
Q ss_pred EEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC---cEEEEEECCCCcEEEE
Q 046902 268 RFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETNSLRTV 341 (393)
Q Consensus 268 ~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---~~l~~yd~~t~~~~~v 341 (393)
.. ......||+++-.+ .....+ ..... ...| .+.++|..|++.... ..++.+|.+.+..+.+
T Consensus 368 ~~-~~g~~~I~~~dl~~--g~~~~l---t~~~~-----d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 368 NR-TNGKFNIARQDLET--GAMQVL---TSTRL-----DESP-SVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARL 432 (448)
T ss_pred Ee-cCCceEEEEEECCC--CCeEEc---cCCCC-----CCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 33 33367899887432 223222 11110 1233 567788888876532 2478888877766655
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=86.48 E-value=27 Score=32.23 Aligned_cols=138 Identities=8% Similarity=0.078 Sum_probs=71.3
Q ss_pred cEEEEEEeCC-CCeEEccccCcccccccccccccccccCceeEe--Cce-EEEeccCCCCCcEEEEEECC-Cceeeeec-
Q 046902 168 VEVEVYSLKT-NSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA--GGA-LHWVSPKSSTRSVIVAFDLV-AEEFYQLP- 241 (393)
Q Consensus 168 ~~~~Vyss~t-~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~-lyw~~~~~~~~~~il~fD~~-~e~~~~i~- 241 (393)
..+.+|+..+ +.++.+...+. . .....+.+ +|. +|.-... ...|.+|++. +..++.+.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~----------~---~~~~~l~~spd~~~lyv~~~~---~~~i~~~~~~~~g~l~~~~~ 75 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDV----------P---GQVQPMVISPDKRHLYVGVRP---EFRVLSYRIADDGALTFAAE 75 (330)
T ss_pred CCEEEEEECCCCceeeeeEEec----------C---CCCccEEECCCCCEEEEEECC---CCcEEEEEECCCCceEEeee
Confidence 4577788764 67776654431 0 11112322 454 4544322 3578888886 45565443
Q ss_pred CCCcccccCCceeEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEE
Q 046902 242 LPDSVNVSYANVHVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLL 320 (393)
Q Consensus 242 lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~ 320 (393)
.|... .. ..++.. +|+..++.......+.+|.+++++. .......+... ....-+.+.++|+.+|
T Consensus 76 ~~~~~----~p--~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~--~~~~~~~~~~~------~~~~~~~~~p~g~~l~ 141 (330)
T PRK11028 76 SPLPG----SP--THISTDHQGRFLFSASYNANCVSVSPLDKDGI--PVAPIQIIEGL------EGCHSANIDPDNRTLW 141 (330)
T ss_pred ecCCC----Cc--eEEEECCCCCEEEEEEcCCCeEEEEEECCCCC--CCCceeeccCC------CcccEeEeCCCCCEEE
Confidence 22111 11 133333 5655444444445899999975442 12222222110 1123356677888887
Q ss_pred EEEc-CcEEEEEECCC
Q 046902 321 LEVR-REKLVWFDLET 335 (393)
Q Consensus 321 l~~~-~~~l~~yd~~t 335 (393)
+... ...+..||+++
T Consensus 142 v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 142 VPCLKEDRIRLFTLSD 157 (330)
T ss_pred EeeCCCCEEEEEEECC
Confidence 7654 35799999976
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=86.26 E-value=34 Score=33.16 Aligned_cols=188 Identities=13% Similarity=0.125 Sum_probs=94.8
Q ss_pred CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCc
Q 046902 109 VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPR 188 (393)
Q Consensus 109 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~ 188 (393)
...++++|+.|++...+...+ . ...+..+.|..+ +++..... .....+.+++..++.-+.+...+.
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~------g--~~~~~~~SPDG~--~la~~~~~----~g~~~Iy~~d~~~~~~~~Lt~~~~ 290 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFP------G--MTFAPRFSPDGR--KVVMSLSQ----GGNTDIYTMDLRSGTTTRLTDSPA 290 (435)
T ss_pred CCEEEEEECCCCcEEEeecCC------C--cccCcEECCCCC--EEEEEEec----CCCceEEEEECCCCceEEccCCCC
Confidence 357999999999887765433 0 112334444332 22222211 123567777888887766643220
Q ss_pred ccccccccccccccccCceeEeCce-EEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEE
Q 046902 189 FLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVF 267 (393)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~ 267 (393)
. .......-+|. +++.... .....|..+|+.+...+.+....... ..+.....+..|+++
T Consensus 291 ~-------------~~~~~~spDG~~i~f~s~~-~g~~~Iy~~d~~g~~~~~lt~~~~~~-----~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 291 I-------------DTSPSYSPDGSQIVFESDR-SGSPQLYVMNADGSNPRRISFGGGRY-----STPVWSPRGDLIAFT 351 (435)
T ss_pred c-------------cCceeEcCCCCEEEEEECC-CCCCeEEEEECCCCCeEEeecCCCcc-----cCeEECCCCCEEEEE
Confidence 0 01112223443 4444322 22357888998877666654221110 012222223445554
Q ss_pred EEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC------cEEEEEECCCCcEEEE
Q 046902 268 RFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR------EKLVWFDLETNSLRTV 341 (393)
Q Consensus 268 ~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------~~l~~yd~~t~~~~~v 341 (393)
.... ....||+++-.+ +.. +. +.... . .....+.+||..|++.... ..|+.+|+.+++.+.+
T Consensus 352 ~~~~-~~~~i~~~d~~~--~~~-~~--lt~~~-----~-~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 352 KQGG-GQFSIGVMKPDG--SGE-RI--LTSGF-----L-VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred EcCC-CceEEEEEECCC--Cce-Ee--ccCCC-----C-CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEc
Confidence 4332 256777766422 222 21 11111 1 1223567788888775431 3699999998887765
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.67 E-value=27 Score=31.78 Aligned_cols=109 Identities=16% Similarity=0.135 Sum_probs=59.7
Q ss_pred ceeEeCceEEEeccCCCCCcEEEEEECCCceee-eecCCCcccccCCceeEEEEEeCCeE---EEEEEcCCCeEEEEEEe
Q 046902 206 YGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFY-QLPLPDSVNVSYANVHVDVGSLEGCL---CVFRFYNLVYVDMWMMK 281 (393)
Q Consensus 206 ~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~~~~~~~~~l~~~~G~L---~~~~~~~~~~~~iW~l~ 281 (393)
.+|.++|-.-.-+ .....|-.||+.+..=. .+--|.+. .......+.+ .++...++..|.||..+
T Consensus 47 tavAVs~~~~aSG---ssDetI~IYDm~k~~qlg~ll~Hags--------itaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 47 TALAVSGPYVASG---SSDETIHIYDMRKRKQLGILLSHAGS--------ITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred eEEEecceeEecc---CCCCcEEEEeccchhhhcceeccccc--------eEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 3566776533222 23578999999865432 23333221 2223333333 45555555689999866
Q ss_pred ecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEE-EcCcEEEEEECCCCc
Q 046902 282 EHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLE-VRREKLVWFDLETNS 337 (393)
Q Consensus 282 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~-~~~~~l~~yd~~t~~ 337 (393)
+|+.+.++....- ...-++++|.|. +-+. ..++.+-.+|+-+++
T Consensus 116 ------~W~~~~slK~H~~-----~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 116 ------SWELLKSLKAHKG-----QVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ------CeEEeeeeccccc-----ccceeEecCCCc-eEEEEcCCceeeeehhhcCc
Confidence 4988888876421 244567777654 4333 333345555555544
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.39 E-value=30 Score=31.87 Aligned_cols=157 Identities=11% Similarity=0.116 Sum_probs=86.0
Q ss_pred ccEEEEEEeCCCCeEEccc--cCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeec---
Q 046902 167 DVEVEVYSLKTNSWRRISN--LPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLP--- 241 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~--~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~--- 241 (393)
.-++.+|+...|.-..... +++ ....++-...-||++-++..+-++.-.++.+|....++..++
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~-----------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~ 234 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKP-----------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID 234 (346)
T ss_pred CceEEEEEcccCccccccccccCC-----------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec
Confidence 4578899998876655432 110 111122223356777666655444445566666667887754
Q ss_pred -CCCcccccCCceeEEEEE-eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEE
Q 046902 242 -LPDSVNVSYANVHVDVGS-LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKL 319 (393)
Q Consensus 242 -lP~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i 319 (393)
+|.+.. .......+-. -+|+..++.-...+.|.+..+++.+ +.=+.+...+.... ..+-+.+.+.|+.+
T Consensus 235 tlP~dF~--g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~--g~L~~~~~~~teg~-----~PR~F~i~~~g~~L 305 (346)
T COG2706 235 TLPEDFT--GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG--GKLELVGITPTEGQ-----FPRDFNINPSGRFL 305 (346)
T ss_pred cCccccC--CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC--CEEEEEEEeccCCc-----CCccceeCCCCCEE
Confidence 787765 2333333332 3777666665554466666666543 22233333333221 12334555667766
Q ss_pred EEEEcC-c--EEEEEECCCCcEEEEEE
Q 046902 320 LLEVRR-E--KLVWFDLETNSLRTVKI 343 (393)
Q Consensus 320 ~l~~~~-~--~l~~yd~~t~~~~~v~~ 343 (393)
+....+ . .++.-|.+|+++..+..
T Consensus 306 iaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 306 IAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EEEccCCCcEEEEEEcCCCceEEeccc
Confidence 655432 1 47788999999988844
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.37 E-value=18 Score=35.32 Aligned_cols=118 Identities=13% Similarity=0.191 Sum_probs=63.1
Q ss_pred eeeceEEEeeC-CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeC
Q 046902 98 SCNGLIALCNS-VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLK 176 (393)
Q Consensus 98 s~~GLl~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~ 176 (393)
..+|-++++++ +.++.||||..++... ... ..+....+..-|.|.+++=.|+... ....+.+|+..
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~~~Kllh--sI~----TgHtaNIFsvKFvP~tnnriv~sgA-------gDk~i~lfdl~ 125 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPFEYKLLH--SIS----TGHTANIFSVKFVPYTNNRIVLSGA-------GDKLIKLFDLD 125 (758)
T ss_pred cCCCCEEeecCCcceEEeecchhcceee--eee----cccccceeEEeeeccCCCeEEEecc-------CcceEEEEecc
Confidence 46788888764 4589999999554332 222 1223345666778887776665433 34678888876
Q ss_pred CCCeEEccc-cCcccccccccccccccccCceeEeCc-eEEEeccCCCCCcEEEEEECCC
Q 046902 177 TNSWRRISN-LPRFLRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIVAFDLVA 234 (393)
Q Consensus 177 t~~W~~~~~-~p~~~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~ 234 (393)
.-+=+..+. +..-..+|. .+..+...-++.-+| ..+|.+.+ ...|.-+|+..
T Consensus 126 ~~~~~~~d~~~~~~~~~~~---cht~rVKria~~p~~PhtfwsasE---DGtirQyDiRE 179 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWS---CHTDRVKRIATAPNGPHTFWSASE---DGTIRQYDIRE 179 (758)
T ss_pred cccccccccCccchhhhhh---hhhhhhhheecCCCCCceEEEecC---CcceeeecccC
Confidence 422121111 110000000 111111222334455 68888766 35688888764
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=84.52 E-value=6.9 Score=37.06 Aligned_cols=74 Identities=9% Similarity=0.073 Sum_probs=52.0
Q ss_pred cCceeEeCceEEEeccCCC---CCcEEEEEECCCceeeeec----CCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEE
Q 046902 204 KGYGVLAGGALHWVSPKSS---TRSVIVAFDLVAEEFYQLP----LPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVD 276 (393)
Q Consensus 204 ~~~~v~~~G~lyw~~~~~~---~~~~il~fD~~~e~~~~i~----lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~ 276 (393)
...+|.+++++|.+++..+ ....+.+||..+.+|..-. .|... ++ +..+..-+++|.++.......-+
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r----~G-hSa~v~~~~rilv~~~~~~~~~~ 101 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPC----KG-YSAVVLNKDRILVIKKGSAPDDS 101 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCC----Cc-ceEEEECCceEEEEeCCCCCccc
Confidence 4567889999999987522 3358999999999998732 33322 11 23445558999999865544678
Q ss_pred EEEEee
Q 046902 277 MWMMKE 282 (393)
Q Consensus 277 iW~l~~ 282 (393)
||.|+-
T Consensus 102 ~w~l~~ 107 (398)
T PLN02772 102 IWFLEV 107 (398)
T ss_pred eEEEEc
Confidence 999974
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.37 E-value=0.31 Score=45.63 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=35.0
Q ss_pred CCCcHHHHHHHhccCCccceeeeeecccchhhhcCChH
Q 046902 3 KKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQD 40 (393)
Q Consensus 3 ~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~ 40 (393)
-.||.+++..||+-|..++++|++.+|+.|+-+..+..
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 46999999999999999999999999999999877654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=82.55 E-value=48 Score=31.94 Aligned_cols=187 Identities=14% Similarity=0.075 Sum_probs=96.7
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..++++|..|++...+...+. . .....+.|..+ +++..... .....+.+++..++..+.+...+.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g------~--~~~~~~SpDG~--~la~~~~~----~g~~~Iy~~d~~~~~~~~lt~~~~- 287 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG------L--NGAPAWSPDGS--KLAFVLSK----DGNPEIYVMDLASRQLSRVTNHPA- 287 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC------C--cCCeEECCCCC--EEEEEEcc----CCCceEEEEECCCCCeEEcccCCC-
Confidence 479999999998877765431 1 11234444332 33222211 123567888999988877653220
Q ss_pred cccccccccccccccCceeEeCc-eEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFR 268 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~ 268 (393)
. .......-+| .+++.... .....|..+|+.+.+...+....... ........+..|++..
T Consensus 288 ----------~--~~~~~~spDg~~i~f~s~~-~g~~~iy~~d~~~g~~~~lt~~~~~~-----~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 288 ----------I--DTEPFWGKDGRTLYFTSDR-GGKPQIYKVNVNGGRAERVTFVGNYN-----ARPRLSADGKTLVMVH 349 (430)
T ss_pred ----------C--cCCeEECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCc-----cceEECCCCCEEEEEE
Confidence 0 0111122244 45655432 23357888999887776654322111 1122222234444444
Q ss_pred EcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC---cEEEEEECCCCcEEEE
Q 046902 269 FYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETNSLRTV 341 (393)
Q Consensus 269 ~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---~~l~~yd~~t~~~~~v 341 (393)
... ....||.++-.+ .....+. .... ...| .+.++|..|++.... ..++..+..++..+.+
T Consensus 350 ~~~-~~~~l~~~dl~t--g~~~~lt---~~~~-----~~~p-~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 350 RQD-GNFHVAAQDLQR--GSVRILT---DTSL-----DESP-SVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred ccC-CceEEEEEECCC--CCEEEcc---CCCC-----CCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 332 356777777422 2333322 1110 1233 567788888876532 3588888877765555
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=82.52 E-value=44 Score=31.49 Aligned_cols=193 Identities=16% Similarity=0.136 Sum_probs=96.0
Q ss_pred eeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 98 SCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 98 s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
..+|.+.+...+..++.+|+.|++.+.--... .. ... ....+ ++ +|+... ....+..++..+
T Consensus 103 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~---~~~--~p~v~---~~-~v~v~~-------~~g~l~a~d~~t 164 (377)
T TIGR03300 103 ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SE---VLS--PPLVA---NG-LVVVRT-------NDGRLTALDAAT 164 (377)
T ss_pred EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ce---eec--CCEEE---CC-EEEEEC-------CCCeEEEEEcCC
Confidence 34677777656678899999998744321111 00 000 00001 12 333322 123567777776
Q ss_pred C--CeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCc--eeee-ecCCCcccccC--
Q 046902 178 N--SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAE--EFYQ-LPLPDSVNVSY-- 250 (393)
Q Consensus 178 ~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e--~~~~-i~lP~~~~~~~-- 250 (393)
+ .|+.-...+. .. ......++..+|.+|.-... ..+.++|+.++ .|+. +..|.......
T Consensus 165 G~~~W~~~~~~~~---------~~-~~~~~sp~~~~~~v~~~~~~----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~ 230 (377)
T TIGR03300 165 GERLWTYSRVTPA---------LT-LRGSASPVIADGGVLVGFAG----GKLVALDLQTGQPLWEQRVALPKGRTELERL 230 (377)
T ss_pred CceeeEEccCCCc---------ee-ecCCCCCEEECCEEEEECCC----CEEEEEEccCCCEeeeeccccCCCCCchhhh
Confidence 5 5875432220 00 11124457778877764432 57999999765 4543 23332111000
Q ss_pred CceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEE
Q 046902 251 ANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVW 330 (393)
Q Consensus 251 ~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ 330 (393)
..........+|.+++..... .+..+.++. + +..|... ... ...|. + .++.||+...+..++.
T Consensus 231 ~~~~~~p~~~~~~vy~~~~~g--~l~a~d~~t-G-~~~W~~~----~~~------~~~p~-~--~~~~vyv~~~~G~l~~ 293 (377)
T TIGR03300 231 VDVDGDPVVDGGQVYAVSYQG--RVAALDLRS-G-RVLWKRD----ASS------YQGPA-V--DDNRLYVTDADGVVVA 293 (377)
T ss_pred hccCCccEEECCEEEEEEcCC--EEEEEECCC-C-cEEEeec----cCC------ccCce-E--eCCEEEEECCCCeEEE
Confidence 000112233477777655432 444444432 2 3457653 111 12232 2 3467887766678999
Q ss_pred EECCCCcEE
Q 046902 331 FDLETNSLR 339 (393)
Q Consensus 331 yd~~t~~~~ 339 (393)
+|..+++..
T Consensus 294 ~d~~tG~~~ 302 (377)
T TIGR03300 294 LDRRSGSEL 302 (377)
T ss_pred EECCCCcEE
Confidence 999988643
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=81.91 E-value=2.9 Score=26.37 Aligned_cols=22 Identities=45% Similarity=0.811 Sum_probs=18.6
Q ss_pred CccEEEEEEeCCCCeEEccccC
Q 046902 166 DDVEVEVYSLKTNSWRRISNLP 187 (393)
Q Consensus 166 ~~~~~~Vyss~t~~W~~~~~~p 187 (393)
....+.+|+..+++|+.+..+|
T Consensus 17 ~~nd~~~~~~~~~~W~~~~~~P 38 (49)
T PF13415_consen 17 RLNDVWVFDLDTNTWTRIGDLP 38 (49)
T ss_pred EecCEEEEECCCCEEEECCCCC
Confidence 3457899999999999997766
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=81.58 E-value=45 Score=30.96 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=66.0
Q ss_pred CceEEEeccCCCCCcEEEEEECCCceeeee---cCCCcccccCCceeE---EEE---EeCCeEEEEEEcC------CCeE
Q 046902 211 GGALHWVSPKSSTRSVIVAFDLVAEEFYQL---PLPDSVNVSYANVHV---DVG---SLEGCLCVFRFYN------LVYV 275 (393)
Q Consensus 211 ~G~lyw~~~~~~~~~~il~fD~~~e~~~~i---~lP~~~~~~~~~~~~---~l~---~~~G~L~~~~~~~------~~~~ 275 (393)
+|.+||.+.+ ..|...|++.+.-... .+-..... ...+.+ ++. .-.|+||+.-... ...-
T Consensus 195 ~~~~~F~Sy~----G~v~~~dlsg~~~~~~~~~~~~t~~e~-~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 195 GGRLYFVSYE----GNVYSADLSGDSAKFGKPWSLLTDAEK-ADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp TTEEEEEBTT----SEEEEEEETTSSEEEEEEEESS-HHHH-HTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred CCeEEEEecC----CEEEEEeccCCcccccCcccccCcccc-ccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 3678998776 6899999987754332 12111100 122322 222 2378898875321 2377
Q ss_pred EEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE--cCcEEEEEECCCCcEEE
Q 046902 276 DMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV--RREKLVWFDLETNSLRT 340 (393)
Q Consensus 276 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~--~~~~l~~yd~~t~~~~~ 340 (393)
+||+++-. .=.++.+|++.. ....+++..+..=+++.. .+..|+.||..|++...
T Consensus 270 eVWv~D~~----t~krv~Ri~l~~------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 270 EVWVYDLK----THKRVARIPLEH------PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEETT----TTEEEEEEEEEE------EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred EEEEEECC----CCeEEEEEeCCC------ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 99999842 225778888742 233577887655455543 23579999999987544
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=81.16 E-value=52 Score=31.40 Aligned_cols=188 Identities=15% Similarity=0.135 Sum_probs=93.1
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..+++++.-.+.-+.|-... .......+.|.. .+ ++.... . .....+.+++..++.-+.+...+.
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~--------~~~~~p~~Spdg-~~-la~~~~-~---~~~~~i~v~d~~~g~~~~~~~~~~- 234 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSR--------EPILSPAWSPDG-QK-LAYVSF-E---SGKPEIYVQDLATGQREKVASFPG- 234 (417)
T ss_pred ceEEEEcCCCCCCEEeecCC--------CceecccCCCCC-CE-EEEEEc-C---CCCcEEEEEECCCCCEEEeecCCC-
Confidence 46888887665545444322 011222344432 23 222221 1 123568889988887665543320
Q ss_pred cccccccccccccccCceeEeCce-EEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFR 268 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~ 268 (393)
. .......-+|. +++.... .....|..+|+.+.....+....... . ..... -+|+-.++.
T Consensus 235 ---------~---~~~~~~spDg~~l~~~~~~-~~~~~i~~~d~~~~~~~~l~~~~~~~---~--~~~~s-~dg~~l~~~ 295 (417)
T TIGR02800 235 ---------M---NGAPAFSPDGSKLAVSLSK-DGNPDIYVMDLDGKQLTRLTNGPGID---T--EPSWS-PDGKSIAFT 295 (417)
T ss_pred ---------C---ccceEECCCCCEEEEEECC-CCCccEEEEECCCCCEEECCCCCCCC---C--CEEEC-CCCCEEEEE
Confidence 0 01112223453 5444332 22356889999887766553211111 0 11111 256544443
Q ss_pred EcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCc---EEEEEECCCCcEEEE
Q 046902 269 FYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRRE---KLVWFDLETNSLRTV 341 (393)
Q Consensus 269 ~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~---~l~~yd~~t~~~~~v 341 (393)
........||.++-.+ ..+..+ .... .......+.++|+.|++..... .++.||+.++..+.+
T Consensus 296 s~~~g~~~iy~~d~~~--~~~~~l---~~~~-----~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l 361 (417)
T TIGR02800 296 SDRGGSPQIYMMDADG--GEVRRL---TFRG-----GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVL 361 (417)
T ss_pred ECCCCCceEEEEECCC--CCEEEe---ecCC-----CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEc
Confidence 3333345788776432 334332 2111 0112235667888888876543 699999999877665
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.13 E-value=37 Score=29.66 Aligned_cols=186 Identities=18% Similarity=0.192 Sum_probs=93.8
Q ss_pred eeceEEEee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 99 CNGLIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 99 ~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
.+|-.|+.. +++.+-+|||..+...+-=... .....-.+..+|. -|+.. + .....+.+++..|
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-----G~EVlD~~~s~Dn----skf~s-~------GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-----GHEVLDAALSSDN----SKFAS-C------GGDKAVQVWDVNT 90 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecCC-----Cceeeeccccccc----ccccc-C------CCCceEEEEEccc
Confidence 455555554 5667999999998765421111 0011112222332 22211 1 1345788899888
Q ss_pred C----CeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCce
Q 046902 178 N----SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANV 253 (393)
Q Consensus 178 ~----~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~ 253 (393)
| +|+....-- ....+...++|.+.|.+ ...+-++|-.+..+..|+.-.... +.
T Consensus 91 Gkv~Rr~rgH~aqV----------NtV~fNeesSVv~Sgsf---------D~s~r~wDCRS~s~ePiQildea~---D~- 147 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQV----------NTVRFNEESSVVASGSF---------DSSVRLWDCRSRSFEPIQILDEAK---DG- 147 (307)
T ss_pred Ceeeeeccccccee----------eEEEecCcceEEEeccc---------cceeEEEEcccCCCCccchhhhhc---Cc-
Confidence 6 465432111 11223345566666553 357899999999998887655543 11
Q ss_pred eEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEEC
Q 046902 254 HVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDL 333 (393)
Q Consensus 254 ~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~ 333 (393)
..-....+..-+.+..+. +++..-+..- ++....+.. ...-+.+.++|+..+...-+..+-..|-
T Consensus 148 -V~Si~v~~heIvaGS~DG-tvRtydiR~G----------~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk 212 (307)
T KOG0316|consen 148 -VSSIDVAEHEIVAGSVDG-TVRTYDIRKG----------TLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDK 212 (307)
T ss_pred -eeEEEecccEEEeeccCC-cEEEEEeecc----------eeehhhcCC---cceeEEecCCCCEEEEeeccceeeeccc
Confidence 223344555555554433 4444333320 011101000 1234566667776666554445666666
Q ss_pred CCCcE
Q 046902 334 ETNSL 338 (393)
Q Consensus 334 ~t~~~ 338 (393)
+|+++
T Consensus 213 ~tGkl 217 (307)
T KOG0316|consen 213 ETGKL 217 (307)
T ss_pred chhHH
Confidence 66553
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=80.80 E-value=40 Score=29.91 Aligned_cols=119 Identities=15% Similarity=0.182 Sum_probs=62.4
Q ss_pred eCceEEEeccCCCCCcEEEEEECCCcee-eeecCCC-cccccCCceeEEEE-EeCCeEEEEEEcCCCeEEEEEEeecCCC
Q 046902 210 AGGALHWVSPKSSTRSVIVAFDLVAEEF-YQLPLPD-SVNVSYANVHVDVG-SLEGCLCVFRFYNLVYVDMWMMKEHAVK 286 (393)
Q Consensus 210 ~~G~lyw~~~~~~~~~~il~fD~~~e~~-~~i~lP~-~~~~~~~~~~~~l~-~~~G~L~~~~~~~~~~~~iW~l~~~~~~ 286 (393)
-+|...+.... ....|..+|+.+.+. ..+.... .... .......+. .-+|+..++.......+.+|-++
T Consensus 166 ~dg~~l~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~----- 237 (300)
T TIGR03866 166 ADGKELWVSSE--IGGTVSVIDVATRKVIKKITFEIPGVHP-EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK----- 237 (300)
T ss_pred CCCCEEEEEcC--CCCEEEEEEcCcceeeeeeeeccccccc-ccCCccceEECCCCCEEEEEcCCCCeEEEEECC-----
Confidence 35654444332 235789999987654 3232211 1000 000011222 23565544433333478888554
Q ss_pred CCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-cCcEEEEEECCCCc-EEEEEE
Q 046902 287 ESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-RREKLVWFDLETNS-LRTVKI 343 (393)
Q Consensus 287 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~~~~l~~yd~~t~~-~~~v~~ 343 (393)
.|.....+.... ....+.+.++|+.|+... .+..+..||+++.+ .+.+.+
T Consensus 238 -~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 238 -TYEVLDYLLVGQ------RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred -CCcEEEEEEeCC------CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 244444443221 233567788888777653 35679999999988 466655
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=80.30 E-value=4.7 Score=24.55 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=17.9
Q ss_pred ceEEEEeccccceeccCCCC
Q 046902 110 QELALFNPSTRKLKTLPLPP 129 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~ 129 (393)
..+.++||.|++|..+|+++
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~ 34 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMP 34 (47)
T ss_pred eeEEEECCCCCeEccCCCCC
Confidence 46889999999999999877
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=80.14 E-value=43 Score=29.88 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=70.5
Q ss_pred eCceEEEeccCCCCCcEEEEEECCCceee-eecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCC
Q 046902 210 AGGALHWVSPKSSTRSVIVAFDLVAEEFY-QLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKES 288 (393)
Q Consensus 210 ~~G~lyw~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~ 288 (393)
.+|.+|=-++. .....|..+|+.+++.. ..++|+... .=.++..+++|+.+.-.+. ..-++-. ..
T Consensus 54 ~~g~LyESTG~-yG~S~l~~~d~~tg~~~~~~~l~~~~F------gEGit~~~d~l~qLTWk~~-~~f~yd~------~t 119 (264)
T PF05096_consen 54 DDGTLYESTGL-YGQSSLRKVDLETGKVLQSVPLPPRYF------GEGITILGDKLYQLTWKEG-TGFVYDP------NT 119 (264)
T ss_dssp ETTEEEEEECS-TTEEEEEEEETTTSSEEEEEE-TTT--------EEEEEEETTEEEEEESSSS-EEEEEET------TT
T ss_pred CCCEEEEeCCC-CCcEEEEEEECCCCcEEEEEECCcccc------ceeEEEECCEEEEEEecCC-eEEEEcc------cc
Confidence 46777765543 34578999999998765 578987653 2267788999999987654 3333222 23
Q ss_pred eEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCc-EEEEEEecCCCC
Q 046902 289 WTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNS-LRTVKIDTHGLD 349 (393)
Q Consensus 289 W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~-~~~v~~~~~~~~ 349 (393)
.+++.++..+. .-=|+..+|+.++++..+.+|...|+++-+ .+.|.+...|.|
T Consensus 120 l~~~~~~~y~~--------EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p 173 (264)
T PF05096_consen 120 LKKIGTFPYPG--------EGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP 173 (264)
T ss_dssp TEEEEEEE-SS--------S--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE
T ss_pred ceEEEEEecCC--------cceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEE
Confidence 56666666532 112333577888888777789999999854 445555323433
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 393 | |||
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 99.47 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 99.44 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 99.43 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 99.39 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 99.38 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 99.37 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 99.32 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 99.32 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 99.28 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 99.26 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 99.26 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 99.24 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 99.17 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 99.07 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 99.05 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 99.05 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.03 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 98.99 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.98 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.86 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.57 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 98.47 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.07 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 97.95 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 97.41 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 96.93 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 96.73 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.64 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 96.54 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 96.28 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 95.98 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 95.79 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 95.72 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 95.56 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 95.45 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 95.25 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 95.1 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 94.9 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 94.65 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 94.61 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 94.38 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 94.3 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 94.16 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 94.15 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 94.14 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 94.05 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 93.98 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 93.9 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 93.85 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 93.73 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 93.67 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 93.5 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 93.37 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 93.24 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 93.21 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 93.04 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 93.01 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 92.89 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.82 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 92.79 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 92.49 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 92.4 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 92.15 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 91.95 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 91.85 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 91.76 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 91.68 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 91.38 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 91.36 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 91.13 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 91.08 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 91.05 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 90.83 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 90.77 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 90.59 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 90.55 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 90.03 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 89.88 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 89.85 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 89.72 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 89.54 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 89.53 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 89.19 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 89.16 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 88.97 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 88.87 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 88.83 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 88.75 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 88.26 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 88.22 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 88.11 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 87.78 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 87.71 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 87.69 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 87.28 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 87.08 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 87.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 86.99 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 86.94 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 86.86 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 86.58 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 86.45 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 86.3 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 86.1 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 86.03 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 85.95 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 85.89 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 85.82 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 85.17 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 84.61 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 84.6 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 84.55 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 84.35 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 84.09 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 83.88 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 83.82 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 83.61 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 83.53 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 83.36 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 83.36 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 83.28 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 83.26 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 83.11 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 82.81 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 82.73 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 82.72 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 82.63 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 82.36 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 82.34 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 81.81 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 81.37 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 80.58 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 80.1 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 80.05 |
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=4e-11 Score=109.68 Aligned_cols=194 Identities=11% Similarity=0.030 Sum_probs=126.7
Q ss_pred eEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeec--CCCCccEEEEEEeCCCCeEEccccCc
Q 046902 111 ELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKG--NDGDDVEVEVYSLKTNSWRRISNLPR 188 (393)
Q Consensus 111 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~--~~~~~~~~~Vyss~t~~W~~~~~~p~ 188 (393)
.++++||.|++|..+|+++ ... .....+. . . =+|+.++.... .......+++|+..+++|+.++.+|.
T Consensus 68 ~~~~~d~~~~~W~~~~~~p--~~r-~~~~~~~---~--~--~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~ 137 (315)
T 4asc_A 68 YFLQFDHLDSEWLGMPPLP--SPR-CLFGLGE---A--L--NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY 137 (315)
T ss_dssp EEEEEETTTTEEEECCCBS--SCE-ESCEEEE---E--T--TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS
T ss_pred ceEEecCCCCeEEECCCCC--cch-hceeEEE---E--C--CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC
Confidence 4899999999999999877 211 1111211 1 1 15666554331 22345679999999999999987772
Q ss_pred ccccccccccccccccCceeEeCceEEEeccC-C--CCCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeE
Q 046902 189 FLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK-S--STRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCL 264 (393)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~-~--~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L 264 (393)
.+.....+.++|.+|.+++. . .....+.+||+.+.+|+.++ +|.... ....+..+|+|
T Consensus 138 ------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~------~~~~~~~~~~i 199 (315)
T 4asc_A 138 ------------VVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS------LFGATVHDGRI 199 (315)
T ss_dssp ------------CCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCB------SCEEEEETTEE
T ss_pred ------------cccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchh------ceEEEEECCEE
Confidence 23455678899999999865 1 12357999999999999984 554332 23567789999
Q ss_pred EEEEEcCCC--eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC--------------cEE
Q 046902 265 CVFRFYNLV--YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR--------------EKL 328 (393)
Q Consensus 265 ~~~~~~~~~--~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~--------------~~l 328 (393)
++++..... .-++|+++-. ...|+.+..++... ....+.+. ++.++++.... ..+
T Consensus 200 yv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v 270 (315)
T 4asc_A 200 IVAAGVTDTGLTSSAEVYSIT--DNKWAPFEAFPQER------SSLSLVSL-VGTLYAIGGFATLETESGELVPTELNDI 270 (315)
T ss_dssp EEEEEECSSSEEEEEEEEETT--TTEEEEECCCSSCC------BSCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEeccCCCCccceEEEEECC--CCeEEECCCCCCcc------cceeEEEE-CCEEEEECCccccCcCCccccccccCcE
Confidence 999876433 3468888742 46899876443321 11122222 44434443211 248
Q ss_pred EEEECCCCcEEEE
Q 046902 329 VWFDLETNSLRTV 341 (393)
Q Consensus 329 ~~yd~~t~~~~~v 341 (393)
..||+++++|+.+
T Consensus 271 ~~yd~~~~~W~~~ 283 (315)
T 4asc_A 271 WRYNEEEKKWEGV 283 (315)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEecCCCChhhhh
Confidence 8999999999998
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-10 Score=106.12 Aligned_cols=192 Identities=11% Similarity=0.100 Sum_probs=125.8
Q ss_pred EEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeec-CCCCccEEEEEEeCCCCeEEccccCccc
Q 046902 112 LALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKG-NDGDDVEVEVYSLKTNSWRRISNLPRFL 190 (393)
Q Consensus 112 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~-~~~~~~~~~Vyss~t~~W~~~~~~p~~~ 190 (393)
++++||.|++|..+|+++ ... .......+ + =+|+.++.... .......+++|++.+++|+.++.+|.
T Consensus 80 ~~~~d~~~~~W~~~~~~p--~~r-~~~~~~~~--~-----~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-- 147 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLP--SAR-CLFGLGEV--D-----DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI-- 147 (318)
T ss_dssp EEEEETTTTEEEECSCBS--SCB-CSCEEEEE--T-----TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS--
T ss_pred EEEEeCCCCcEEECCCCC--ccc-cccceEEE--C-----CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC--
Confidence 889999999999999877 221 12222221 1 25666655432 22234679999999999999987772
Q ss_pred ccccccccccccccCceeEeCceEEEeccCC---CCCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEE
Q 046902 191 RDFYDYLYHSLFRKGYGVLAGGALHWVSPKS---STRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCV 266 (393)
Q Consensus 191 ~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~---~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~ 266 (393)
.+.....+.++|.+|.+++.. .....+..||+.+++|+.++ +|.... ...++..+|+|++
T Consensus 148 ----------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~------~~~~~~~~~~iyv 211 (318)
T 2woz_A 148 ----------KVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS------MFGVAIHKGKIVI 211 (318)
T ss_dssp ----------CEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCB------SCEEEEETTEEEE
T ss_pred ----------cccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcc------cceEEEECCEEEE
Confidence 224455678999999998641 12356999999999999984 443322 2356778999999
Q ss_pred EEEcCCC--eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-c--------------CcEEE
Q 046902 267 FRFYNLV--YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-R--------------REKLV 329 (393)
Q Consensus 267 ~~~~~~~--~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~--------------~~~l~ 329 (393)
++..... .-++|+++-. ...|+++..++... ....+.+ -++ .|++.. . ...+.
T Consensus 212 ~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~-~~~-~i~v~GG~~~~~~~~~~~~~~~~~~v~ 281 (318)
T 2woz_A 212 AGGVTEDGLSASVEAFDLK--TNKWEVMTEFPQER------SSISLVS-LAG-SLYAIGGFAMIQLESKEFAPTEVNDIW 281 (318)
T ss_dssp EEEEETTEEEEEEEEEETT--TCCEEECCCCSSCC------BSCEEEE-ETT-EEEEECCBCCBC----CCBCCBCCCEE
T ss_pred EcCcCCCCccceEEEEECC--CCeEEECCCCCCcc------cceEEEE-ECC-EEEEECCeeccCCCCceeccceeeeEE
Confidence 9875432 3467877642 46799875444321 1112222 244 455432 1 13599
Q ss_pred EEECCCCcEEEE
Q 046902 330 WFDLETNSLRTV 341 (393)
Q Consensus 330 ~yd~~t~~~~~v 341 (393)
.||+++++|+.+
T Consensus 282 ~yd~~~~~W~~~ 293 (318)
T 2woz_A 282 KYEDDKKEWAGM 293 (318)
T ss_dssp EEETTTTEEEEE
T ss_pred EEeCCCCEehhh
Confidence 999999999998
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-11 Score=110.71 Aligned_cols=210 Identities=10% Similarity=0.047 Sum_probs=133.5
Q ss_pred eeeeeceEEEee-----CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEE
Q 046902 96 LGSCNGLIALCN-----SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEV 170 (393)
Q Consensus 96 ~~s~~GLl~~~~-----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~ 170 (393)
++..+|.|++.. ....+.++||.|++|..+|+++ ... .....+. ++ -+|+.++...........+
T Consensus 51 ~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r-~~~~~~~--~~-----~~iyv~GG~~~~~~~~~~~ 120 (306)
T 3ii7_A 51 CVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP--TPR-DSLAACA--AE-----GKIYTSGGSEVGNSALYLF 120 (306)
T ss_dssp EEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS--SCC-BSCEEEE--ET-----TEEEEECCBBTTBSCCCCE
T ss_pred EEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC--ccc-cceeEEE--EC-----CEEEEECCCCCCCcEeeeE
Confidence 334566555443 2357999999999999999877 221 1222222 11 2566655433222244679
Q ss_pred EEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCC--CC----CcEEEEEECCCceeeeec-CC
Q 046902 171 EVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS--ST----RSVIVAFDLVAEEFYQLP-LP 243 (393)
Q Consensus 171 ~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~--~~----~~~il~fD~~~e~~~~i~-lP 243 (393)
++|++.+++|+.++.+|. .+.....+.++|.+|.+++.. .. ...+.+||+.+++|+.++ +|
T Consensus 121 ~~~d~~~~~W~~~~~~p~------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p 188 (306)
T 3ii7_A 121 ECYDTRTESWHTKPSMLT------------QRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI 188 (306)
T ss_dssp EEEETTTTEEEEECCCSS------------CCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCS
T ss_pred EEEeCCCCceEeCCCCcC------------CcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCcc
Confidence 999999999999987772 224455678999999998641 11 467999999999999984 44
Q ss_pred CcccccCCceeEEEEEeCCeEEEEEEcCCC--eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEE
Q 046902 244 DSVNVSYANVHVDVGSLEGCLCVFRFYNLV--YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLL 321 (393)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~--~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l 321 (393)
.... ...++..+|+|++++..... .-++|+++-. ...|+.+..++... ......+. ++.++++
T Consensus 189 ~~r~------~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~~-~~~i~v~ 253 (306)
T 3ii7_A 189 EARK------NHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIK--LNEWKMVSPMPWKG------VTVKCAAV-GSIVYVL 253 (306)
T ss_dssp SCCB------SCEEEEETTEEEEECCEETTEEBCCEEEEETT--TTEEEECCCCSCCB------SCCEEEEE-TTEEEEE
T ss_pred chhh------cceEEEECCEEEEEeCCCCCCCCceEEEeeCC--CCcEEECCCCCCCc------cceeEEEE-CCEEEEE
Confidence 4332 34667789999999765332 2357777742 46799875443321 11122222 4444444
Q ss_pred EEc-----CcEEEEEECCCCcEEEEE
Q 046902 322 EVR-----REKLVWFDLETNSLRTVK 342 (393)
Q Consensus 322 ~~~-----~~~l~~yd~~t~~~~~v~ 342 (393)
... ...+..||+++++|+.+.
T Consensus 254 GG~~~~~~~~~~~~yd~~~~~W~~~~ 279 (306)
T 3ii7_A 254 AGFQGVGRLGHILEYNTETDKWVANS 279 (306)
T ss_dssp ECBCSSSBCCEEEEEETTTTEEEEEE
T ss_pred eCcCCCeeeeeEEEEcCCCCeEEeCC
Confidence 321 136999999999999984
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.5e-11 Score=106.41 Aligned_cols=206 Identities=15% Similarity=0.157 Sum_probs=131.9
Q ss_pred eeeeceEEEeeC------CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEE
Q 046902 97 GSCNGLIALCNS------VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEV 170 (393)
Q Consensus 97 ~s~~GLl~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~ 170 (393)
+..+|.|++... ...+.++||.|++|..+|+++ ... .....+. ++ + +++.++.... ......+
T Consensus 58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r-~~~~~~~--~~---~--~iyv~GG~~~-~~~~~~~ 126 (302)
T 2xn4_A 58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMR--DRR-STLGAAV--LN---G--LLYAVGGFDG-STGLSSV 126 (302)
T ss_dssp EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCS--SCC-BSCEEEE--ET---T--EEEEEEEECS-SCEEEEE
T ss_pred EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCC--ccc-cceEEEE--EC---C--EEEEEcCCCC-CccCceE
Confidence 344665555431 246999999999999999877 221 1222222 11 1 5555554322 1234579
Q ss_pred EEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCC----CcEEEEEECCCceeeeec-CCCc
Q 046902 171 EVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSST----RSVIVAFDLVAEEFYQLP-LPDS 245 (393)
Q Consensus 171 ~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~----~~~il~fD~~~e~~~~i~-lP~~ 245 (393)
++|++.+++|+.++.+|. .+.....+.++|.+|.+++.... ...+..||+.+++|+.+. +|..
T Consensus 127 ~~~d~~~~~W~~~~~~p~------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 194 (302)
T 2xn4_A 127 EAYNIKSNEWFHVAPMNT------------RRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR 194 (302)
T ss_dssp EEEETTTTEEEEECCCSS------------CCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC
T ss_pred EEEeCCCCeEeecCCCCC------------cccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc
Confidence 999999999999987772 22345567899999999764211 356999999999999984 4443
Q ss_pred ccccCCceeEEEEEeCCeEEEEEEcCCC--eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE
Q 046902 246 VNVSYANVHVDVGSLEGCLCVFRFYNLV--YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV 323 (393)
Q Consensus 246 ~~~~~~~~~~~l~~~~G~L~~~~~~~~~--~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~ 323 (393)
.. ...++..+|+|++++..... .-++|+++-. ...|+.+..++... ....+.+ -++ .|++..
T Consensus 195 r~------~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~r------~~~~~~~-~~~-~i~v~G 258 (302)
T 2xn4_A 195 RS------GAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPT--TNAWRQVADMNMCR------RNAGVCA-VNG-LLYVVG 258 (302)
T ss_dssp CB------SCEEEEETTEEEEECCBSSSSBCCCEEEEETT--TTEEEEECCCSSCC------BSCEEEE-ETT-EEEEEC
T ss_pred cc------cccEEEECCEEEEECCCCCCcccceEEEEeCC--CCCEeeCCCCCCcc------ccCeEEE-ECC-EEEEEC
Confidence 32 23667889999999865432 3367777742 46799876444321 1112222 244 455542
Q ss_pred c-C-----cEEEEEECCCCcEEEE
Q 046902 324 R-R-----EKLVWFDLETNSLRTV 341 (393)
Q Consensus 324 ~-~-----~~l~~yd~~t~~~~~v 341 (393)
. + ..+..||+++++|+.+
T Consensus 259 G~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 259 GDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CcCCCcccccEEEEcCCCCeEEEC
Confidence 1 1 2499999999999987
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=99.38 E-value=6.6e-11 Score=107.86 Aligned_cols=194 Identities=13% Similarity=0.099 Sum_probs=125.6
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..++++||.|++|..+|+++ ... .....+. ++ =+|+.++..... .....+++|++.+++|+.++.+|.
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p--~~r-~~~~~~~--~~-----~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~- 157 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMS--VPR-NRIGVGV--ID-----GHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLT- 157 (308)
T ss_dssp CCEEEEETTTTEEEECCCCS--SCC-BTCEEEE--ET-----TEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSS-
T ss_pred ceEEEECCCCCeEeECCCCC--cCc-cccEEEE--EC-----CEEEEEcCCCCC-cccccEEEECCCCCeEeECCCCCc-
Confidence 36899999999999999877 221 1222222 11 156555443221 123568999999999999987772
Q ss_pred cccccccccccccccCceeEeCceEEEeccCCC--CCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS--TRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCV 266 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~ 266 (393)
.+.....+.++|.+|.+++... ....+..||+.+++|+.++ +|.... ...++..+|+|++
T Consensus 158 -----------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~------~~~~~~~~~~iyv 220 (308)
T 1zgk_A 158 -----------RRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS------GAGVCVLHNCIYA 220 (308)
T ss_dssp -----------CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB------SCEEEEETTEEEE
T ss_pred -----------cccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc------cceEEEECCEEEE
Confidence 2234556788999999986521 1357999999999999984 443321 2356778999999
Q ss_pred EEEcCCC--eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc------CcEEEEEECCCCcE
Q 046902 267 FRFYNLV--YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR------REKLVWFDLETNSL 338 (393)
Q Consensus 267 ~~~~~~~--~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~------~~~l~~yd~~t~~~ 338 (393)
++..... .-++|+++-. ...|+++..++... ...-+.+ -++ .|++... ...+..||+++++|
T Consensus 221 ~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~p~~r------~~~~~~~-~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 221 AGGYDGQDQLNSVERYDVE--TETWTFVAPMKHRR------SALGITV-HQG-RIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp ECCBCSSSBCCCEEEEETT--TTEEEECCCCSSCC------BSCEEEE-ETT-EEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred EeCCCCCCccceEEEEeCC--CCcEEECCCCCCCc------cceEEEE-ECC-EEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 9865432 3567777742 46799876443321 1112222 244 4555421 23699999999999
Q ss_pred EEEE
Q 046902 339 RTVK 342 (393)
Q Consensus 339 ~~v~ 342 (393)
+.+.
T Consensus 291 ~~~~ 294 (308)
T 1zgk_A 291 SEVT 294 (308)
T ss_dssp EEEE
T ss_pred eecC
Confidence 9984
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-10 Score=104.58 Aligned_cols=207 Identities=12% Similarity=0.127 Sum_probs=131.8
Q ss_pred eeeeeceEEEeeC------CceEEEEeccccc---eeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCC
Q 046902 96 LGSCNGLIALCNS------VQELALFNPSTRK---LKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGD 166 (393)
Q Consensus 96 ~~s~~GLl~~~~~------~~~~~V~NP~T~~---~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~ 166 (393)
.+..+|.|++... ...++++||.|++ |..+|+++ ... .....+. ++ -+|+.++.... ...
T Consensus 58 ~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p--~~r-~~~~~~~--~~-----~~lyv~GG~~~-~~~ 126 (301)
T 2vpj_A 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN--VRR-GLAGATT--LG-----DMIYVSGGFDG-SRR 126 (301)
T ss_dssp EEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS--SCC-BSCEEEE--ET-----TEEEEECCBCS-SCB
T ss_pred EEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC--CCc-cceeEEE--EC-----CEEEEEcccCC-Ccc
Confidence 3344565554431 2469999999999 99998877 221 1222221 11 25665554322 123
Q ss_pred ccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCC--CCcEEEEEECCCceeeeec-CC
Q 046902 167 DVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS--TRSVIVAFDLVAEEFYQLP-LP 243 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~il~fD~~~e~~~~i~-lP 243 (393)
...+++|++.+++|+.++.+|. .+.....+.++|.+|.+++... ....+.+||+.+.+|+.+. +|
T Consensus 127 ~~~~~~~d~~~~~W~~~~~~p~------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p 194 (301)
T 2vpj_A 127 HTSMERYDPNIDQWSMLGDMQT------------AREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA 194 (301)
T ss_dssp CCEEEEEETTTTEEEEEEECSS------------CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS
T ss_pred cceEEEEcCCCCeEEECCCCCC------------CcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC
Confidence 4579999999999999987762 2234556788999999976522 2357999999999999984 44
Q ss_pred CcccccCCceeEEEEEeCCeEEEEEEcCCC--eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEE
Q 046902 244 DSVNVSYANVHVDVGSLEGCLCVFRFYNLV--YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLL 321 (393)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~--~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l 321 (393)
.... ...++..+|+|++++..... .-++|.++-. ...|+.+..++... ......+. ++ .|++
T Consensus 195 ~~r~------~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~p~~r------~~~~~~~~-~~-~i~v 258 (301)
T 2vpj_A 195 TKRS------GAGVALLNDHIYVVGGFDGTAHLSSVEAYNIR--TDSWTTVTSMTTPR------CYVGATVL-RG-RLYA 258 (301)
T ss_dssp SCCB------SCEEEEETTEEEEECCBCSSSBCCCEEEEETT--TTEEEEECCCSSCC------BSCEEEEE-TT-EEEE
T ss_pred cccc------cceEEEECCEEEEEeCCCCCcccceEEEEeCC--CCcEEECCCCCCcc------cceeEEEE-CC-EEEE
Confidence 4332 23667789999999865432 3457777642 46799875443321 11122222 44 4555
Q ss_pred EEc-C-----cEEEEEECCCCcEEEE
Q 046902 322 EVR-R-----EKLVWFDLETNSLRTV 341 (393)
Q Consensus 322 ~~~-~-----~~l~~yd~~t~~~~~v 341 (393)
... + ..+..||+++++|+.+
T Consensus 259 ~GG~~~~~~~~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 259 IAGYDGNSLLSSIECYDPIIDSWEVV 284 (301)
T ss_dssp ECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred EcCcCCCcccccEEEEcCCCCeEEEc
Confidence 421 1 3589999999999988
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-10 Score=105.95 Aligned_cols=237 Identities=14% Similarity=0.074 Sum_probs=144.1
Q ss_pred CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCc
Q 046902 109 VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPR 188 (393)
Q Consensus 109 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~ 188 (393)
...+.++||.+++|..+++++ ... .....+. ++ + +|+.++... ......+++|+..+++|+.+..+|.
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p--~~r-~~~~~~~--~~----~-~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPF--EKR-RDAACVF--WD----N-VVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCS--CCC-BSCEEEE--ET----T-EEEEECCBS--SSBCCEEEEEETTTTEEEEEECCSS
T ss_pred CceEEEecCCCCCEecCCCCC--ccc-ceeEEEE--EC----C-EEEEEeCCC--CCCcceEEEEeCCCCeEEECCCCCc
Confidence 457899999999999999877 221 1222222 11 1 455554332 2245689999999999999987772
Q ss_pred ccccccccccccccccCceeEeCceEEEeccCC---CCCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeE
Q 046902 189 FLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS---STRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCL 264 (393)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~---~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L 264 (393)
.+.....+.++|.+|.+++.. .....+..||+.+.+|+.++ +|.... ...++..+|+|
T Consensus 91 ------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------~~~~~~~~~~i 152 (306)
T 3ii7_A 91 ------------PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC------SHGMVEANGLI 152 (306)
T ss_dssp ------------CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB------SCEEEEETTEE
T ss_pred ------------cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc------eeEEEEECCEE
Confidence 223455678899999998642 12356999999999999984 454332 23567789999
Q ss_pred EEEEEcCCC------eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc------CcEEEEEE
Q 046902 265 CVFRFYNLV------YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR------REKLVWFD 332 (393)
Q Consensus 265 ~~~~~~~~~------~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~------~~~l~~yd 332 (393)
++++..... .-++|+++-. ...|+++..++... ...-+.+. ++ .|++... ...+..||
T Consensus 153 yv~GG~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~~-~~-~i~v~GG~~~~~~~~~~~~yd 222 (306)
T 3ii7_A 153 YVCGGSLGNNVSGRVLNSCEVYDPA--TETWTELCPMIEAR------KNHGLVFV-KD-KIFAVGGQNGLGGLDNVEYYD 222 (306)
T ss_dssp EEECCEESCTTTCEECCCEEEEETT--TTEEEEECCCSSCC------BSCEEEEE-TT-EEEEECCEETTEEBCCEEEEE
T ss_pred EEECCCCCCCCcccccceEEEeCCC--CCeEEECCCccchh------hcceEEEE-CC-EEEEEeCCCCCCCCceEEEee
Confidence 999864321 3457777642 46799876443321 11122222 44 4555421 13599999
Q ss_pred CCCCcEEEEEEecCCCC--eeeeEEEEeccccCCCCCCCCCCCCCccccccchHHHhhh
Q 046902 333 LETNSLRTVKIDTHGLD--FVDTEICMASLVPLSDKGGGCGGGINGMKRRNLEEKEKRH 389 (393)
Q Consensus 333 ~~t~~~~~v~~~~~~~~--~~~~~~y~~SL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
+++++|+.+.- ...+ ...+..+-..|+-+.... .....+.+..-+++..+|+.
T Consensus 223 ~~~~~W~~~~~--~p~~r~~~~~~~~~~~i~v~GG~~--~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 223 IKLNEWKMVSP--MPWKGVTVKCAAVGSIVYVLAGFQ--GVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp TTTTEEEECCC--CSCCBSCCEEEEETTEEEEEECBC--SSSBCCEEEEEETTTTEEEE
T ss_pred CCCCcEEECCC--CCCCccceeEEEECCEEEEEeCcC--CCeeeeeEEEEcCCCCeEEe
Confidence 99999998832 1112 344555545554443322 11233455556666655543
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.4e-10 Score=103.68 Aligned_cols=236 Identities=10% Similarity=0.108 Sum_probs=143.4
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCC---eEEcccc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNS---WRRISNL 186 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~---W~~~~~~ 186 (393)
..++++||.|++|..+|.++ ... .....+. ++ =+|+.++.... ......+++|+..+++ |+.+..+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p--~~r-~~~~~~~--~~-----~~l~v~GG~~~-~~~~~~~~~~d~~~~~~~~W~~~~~~ 99 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSIT--RKR-RYVASVS--LH-----DRIYVIGGYDG-RSRLSSVECLDYTADEDGVWYSVAPM 99 (301)
T ss_dssp CCEEEEETTTTEEEECCCCS--SCC-BSCEEEE--ET-----TEEEEECCBCS-SCBCCCEEEEETTCCTTCCCEEECCC
T ss_pred eEEEEEcCCCCeEEeCCCCC--hhh-ccccEEE--EC-----CEEEEEcCCCC-CccCceEEEEECCCCCCCeeEECCCC
Confidence 46899999999999999876 211 1122221 11 15555554321 2234578999999999 9999877
Q ss_pred CcccccccccccccccccCceeEeCceEEEeccCCC--CCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCe
Q 046902 187 PRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS--TRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGC 263 (393)
Q Consensus 187 p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~ 263 (393)
|. .+.....+.++|.+|.+++... ....+..||+.+.+|+.++ +|.... ....+..+|+
T Consensus 100 p~------------~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------~~~~~~~~~~ 161 (301)
T 2vpj_A 100 NV------------RRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTARE------GAGLVVASGV 161 (301)
T ss_dssp SS------------CCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCB------SCEEEEETTE
T ss_pred CC------------CccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcc------cceEEEECCE
Confidence 72 2344556788999999986522 2357999999999999974 554332 2356778999
Q ss_pred EEEEEEcCCC--eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc------CcEEEEEECCC
Q 046902 264 LCVFRFYNLV--YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR------REKLVWFDLET 335 (393)
Q Consensus 264 L~~~~~~~~~--~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~------~~~l~~yd~~t 335 (393)
|++++..... .-++|+++-. ...|+++..++... . .....+ -++ .|++... ...+..||+++
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~--~~~W~~~~~~p~~r----~--~~~~~~-~~~-~i~v~GG~~~~~~~~~v~~yd~~~ 231 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPH--TGHWTNVTPMATKR----S--GAGVAL-LND-HIYVVGGFDGTAHLSSVEAYNIRT 231 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETT--TTEEEEECCCSSCC----B--SCEEEE-ETT-EEEEECCBCSSSBCCCEEEEETTT
T ss_pred EEEECCCCCCcccceEEEEeCC--CCcEEeCCCCCccc----c--cceEEE-ECC-EEEEEeCCCCCcccceEEEEeCCC
Confidence 9999865432 3457777742 46899875443221 1 111222 244 5555421 13599999999
Q ss_pred CcEEEEEEecCCCC--eeeeEEEEeccccCCCCCCCCCCCCCccccccchHHHhh
Q 046902 336 NSLRTVKIDTHGLD--FVDTEICMASLVPLSDKGGGCGGGINGMKRRNLEEKEKR 388 (393)
Q Consensus 336 ~~~~~v~~~~~~~~--~~~~~~y~~SL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
++|+.+.- ...+ .+.++.+-..|.-+.... .....+.++.-+.+..+|.
T Consensus 232 ~~W~~~~~--~p~~r~~~~~~~~~~~i~v~GG~~--~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 232 DSWTTVTS--MTTPRCYVGATVLRGRLYAIAGYD--GNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp TEEEEECC--CSSCCBSCEEEEETTEEEEECCBC--SSSBEEEEEEEETTTTEEE
T ss_pred CcEEECCC--CCCcccceeEEEECCEEEEEcCcC--CCcccccEEEEcCCCCeEE
Confidence 99998832 1112 344555555554443321 1123345555566555554
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=99.28 E-value=9.7e-11 Score=106.76 Aligned_cols=238 Identities=11% Similarity=0.057 Sum_probs=142.8
Q ss_pred CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEee---cCCCCccEEEEEEeCCCCeEEccc
Q 046902 109 VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFK---GNDGDDVEVEVYSLKTNSWRRISN 185 (393)
Q Consensus 109 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~---~~~~~~~~~~Vyss~t~~W~~~~~ 185 (393)
...+.++||.|++|..++.++ .... ....+.+ + + +|+.++... ........+++|+..+++|+.++.
T Consensus 38 ~~~~~~~d~~~~~W~~~~~~p--~~r~-~~~~~~~--~---~--~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 107 (308)
T 1zgk_A 38 LSYLEAYNPSNGTWLRLADLQ--VPRS-GLAGCVV--G---G--LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP 107 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCS--SCCB-SCEEEEE--T---T--EEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC
T ss_pred cceEEEEcCCCCeEeECCCCC--cccc-cceEEEE--C---C--EEEEECCCcCCCCCCeecceEEEECCCCCeEeECCC
Confidence 346999999999999998877 2211 1222111 1 1 455444321 111123468999999999999987
Q ss_pred cCcccccccccccccccccCceeEeCceEEEeccCCC--CCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCC
Q 046902 186 LPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS--TRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEG 262 (393)
Q Consensus 186 ~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G 262 (393)
+|. .+.....+.++|.+|.+++... ....+..||+.+.+|+.++ +|.... ....+..+|
T Consensus 108 ~p~------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~------~~~~~~~~~ 169 (308)
T 1zgk_A 108 MSV------------PRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRI------GVGVAVLNR 169 (308)
T ss_dssp CSS------------CCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCB------SCEEEEETT
T ss_pred CCc------------CccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcccc------ceEEEEECC
Confidence 772 2234556788999999976411 1246999999999999984 554332 235667799
Q ss_pred eEEEEEEcCCC--eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-c-----CcEEEEEECC
Q 046902 263 CLCVFRFYNLV--YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-R-----REKLVWFDLE 334 (393)
Q Consensus 263 ~L~~~~~~~~~--~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~-----~~~l~~yd~~ 334 (393)
+|++++..... .-++|+++-. ...|+.+..++... . ..-..+. ++ .|++.. . ...+..||++
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r----~--~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPE--RNEWRMITAMNTIR----S--GAGVCVL-HN-CIYAAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETT--TTEEEECCCCSSCC----B--SCEEEEE-TT-EEEEECCBCSSSBCCCEEEEETT
T ss_pred EEEEEeCCCCCCcCceEEEEeCC--CCeEeeCCCCCCcc----c--cceEEEE-CC-EEEEEeCCCCCCccceEEEEeCC
Confidence 99999865432 3457777642 46899875443321 1 1122222 44 555543 1 1359999999
Q ss_pred CCcEEEEEEecCCCC--eeeeEEEEeccccCCCCCCCCCCCCCccccccchHHHhh
Q 046902 335 TNSLRTVKIDTHGLD--FVDTEICMASLVPLSDKGGGCGGGINGMKRRNLEEKEKR 388 (393)
Q Consensus 335 t~~~~~v~~~~~~~~--~~~~~~y~~SL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
+++|+.+.- ...+ ...+..+-..|.-+.... .....+.++.-+.+..+|.
T Consensus 240 ~~~W~~~~~--~p~~r~~~~~~~~~~~i~v~GG~~--~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 240 TETWTFVAP--MKHRRSALGITVHQGRIYVLGGYD--GHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp TTEEEECCC--CSSCCBSCEEEEETTEEEEECCBC--SSCBCCEEEEEETTTTEEE
T ss_pred CCcEEECCC--CCCCccceEEEEECCEEEEEcCcC--CCcccceEEEEcCCCCEEe
Confidence 999998831 1112 344555555555443321 1233455566666666664
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-10 Score=103.06 Aligned_cols=236 Identities=14% Similarity=0.141 Sum_probs=142.7
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..+.++||.+++|..++.++ ... .....+. ++ -+|+.++.... ......+++|+..+++|+.++.+|.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p--~~r-~~~~~~~--~~-----~~lyv~GG~~~-~~~~~~~~~~d~~~~~W~~~~~~p~- 97 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELP--SRR-CRAGMVY--MA-----GLVFAVGGFNG-SLRVRTVDSYDPVKDQWTSVANMRD- 97 (302)
T ss_dssp CCEEEEETTTTEEEEECCCS--SCC-BSCEEEE--ET-----TEEEEESCBCS-SSBCCCEEEEETTTTEEEEECCCSS-
T ss_pred CcEEEEcCcCCcEeEcccCC--ccc-ccceEEE--EC-----CEEEEEeCcCC-CccccceEEECCCCCceeeCCCCCc-
Confidence 46899999999999998776 221 1122221 11 24555543221 1234568999999999999987772
Q ss_pred cccccccccccccccCceeEeCceEEEeccCCC--CCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS--TRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCV 266 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~ 266 (393)
.+.....+.++|.+|.+++... ....+..||+.+.+|+.++ +|.... ....+..+|+|++
T Consensus 98 -----------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------~~~~~~~~~~iyv 160 (302)
T 2xn4_A 98 -----------RRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRS------SVGVGVVGGLLYA 160 (302)
T ss_dssp -----------CCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCB------SCEEEEETTEEEE
T ss_pred -----------cccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCccc------CceEEEECCEEEE
Confidence 2234556788999999986422 1246899999999999984 443322 2356778999999
Q ss_pred EEEcCCC----eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc------CcEEEEEECCCC
Q 046902 267 FRFYNLV----YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR------REKLVWFDLETN 336 (393)
Q Consensus 267 ~~~~~~~----~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~------~~~l~~yd~~t~ 336 (393)
++..... .-++|+++-. ...|+.+..++... ......+ -++ .|++... ...+..||++++
T Consensus 161 ~GG~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 161 VGGYDVASRQCLSTVECYNAT--TNEWTYIAEMSTRR------SGAGVGV-LNN-LLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp ECCEETTTTEECCCEEEEETT--TTEEEEECCCSSCC------BSCEEEE-ETT-EEEEECCBSSSSBCCCEEEEETTTT
T ss_pred EeCCCCCCCccccEEEEEeCC--CCcEEECCCCcccc------ccccEEE-ECC-EEEEECCCCCCcccceEEEEeCCCC
Confidence 9864321 2357777742 46799875443321 1112222 244 5555421 135999999999
Q ss_pred cEEEEEEecCCCC--eeeeEEEEeccccCCCCCCCCCCCCCccccccchHHHhh
Q 046902 337 SLRTVKIDTHGLD--FVDTEICMASLVPLSDKGGGCGGGINGMKRRNLEEKEKR 388 (393)
Q Consensus 337 ~~~~v~~~~~~~~--~~~~~~y~~SL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
+|+.+.- ...+ ...++.+...|.-+.... .....+..+.-+.+..+|.
T Consensus 231 ~W~~~~~--~~~~r~~~~~~~~~~~i~v~GG~~--~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 231 AWRQVAD--MNMCRRNAGVCAVNGLLYVVGGDD--GSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp EEEEECC--CSSCCBSCEEEEETTEEEEECCBC--SSSBCCCEEEEETTTTEEE
T ss_pred CEeeCCC--CCCccccCeEEEECCEEEEECCcC--CCcccccEEEEcCCCCeEE
Confidence 9998832 1122 344555555555443321 1223445566566655554
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=7e-11 Score=109.97 Aligned_cols=262 Identities=11% Similarity=0.011 Sum_probs=148.5
Q ss_pred eeeeeceEEEee--CCceEEEEeccc--cceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeec--C--CCCc
Q 046902 96 LGSCNGLIALCN--SVQELALFNPST--RKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKG--N--DGDD 167 (393)
Q Consensus 96 ~~s~~GLl~~~~--~~~~~~V~NP~T--~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~--~--~~~~ 167 (393)
.+..+|.|.+.. ....++++||.+ ++|..+|+++ .........+. ++ + +|+.++.... . ....
T Consensus 15 ~~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p--~~~R~~~~~~~--~~---~--~lyv~GG~~~~~~~~~~~~ 85 (357)
T 2uvk_A 15 GAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFP--GGPRDQATSAF--ID---G--NLYVFGGIGKNSEGLTQVF 85 (357)
T ss_dssp EEEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCT--TCCCBSCEEEE--ET---T--EEEEECCEEECTTSCEEEC
T ss_pred EEEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCC--CCcCccceEEE--EC---C--EEEEEcCCCCCCCccceee
Confidence 334467665544 235799999984 9999998866 11111222222 22 1 4555554311 1 1123
Q ss_pred cEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCC-------------------------
Q 046902 168 VEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS------------------------- 222 (393)
Q Consensus 168 ~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~------------------------- 222 (393)
..+++|++.+++|+.+..+++ ..+.....+.++|.+|.+++...
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p-----------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAP-----------MGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINA 154 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCS-----------SCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccEEEEeCCCCcEEECCCCCC-----------cccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhh
Confidence 568999999999999976551 11233445679999999986421
Q ss_pred -----------CCcEEEEEECCCceeeee-cCCCcccccCCceeEEEEEeCCeEEEEEEcCC---CeEEEEEEeecCCCC
Q 046902 223 -----------TRSVIVAFDLVAEEFYQL-PLPDSVNVSYANVHVDVGSLEGCLCVFRFYNL---VYVDMWMMKEHAVKE 287 (393)
Q Consensus 223 -----------~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~---~~~~iW~l~~~~~~~ 287 (393)
....+.+||+.+.+|+.+ ++|.... ....++..+|+|++++.... ..-++|.++-+....
T Consensus 155 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~-----~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~ 229 (357)
T 2uvk_A 155 HYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGT-----AGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNL 229 (357)
T ss_dssp HHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCC-----BSCEEEEETTEEEEECCEEETTEECCCEEEEECC---C
T ss_pred hhccccccccCCcccEEEEeCCCCcEEECCCCCCCCc-----ccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCC
Confidence 125899999999999997 4553321 12467788999999975421 134577775211246
Q ss_pred CeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC-----------------------cEEEEEECCCCcEEEEEEe
Q 046902 288 SWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR-----------------------EKLVWFDLETNSLRTVKID 344 (393)
Q Consensus 288 ~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-----------------------~~l~~yd~~t~~~~~v~~~ 344 (393)
.|+.+..++.+.. . ....++..++ .|++.... ..+..||+++++|+.+.-
T Consensus 230 ~W~~~~~~~~~~~--~---~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~- 302 (357)
T 2uvk_A 230 KWNKLAPVSSPDG--V---AGGFAGISND-SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE- 302 (357)
T ss_dssp EEEECCCSSTTTC--C---BSCEEEEETT-EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE-
T ss_pred cEEecCCCCCCcc--c---ccceEEEECC-EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC-
Confidence 7998765532211 1 1111222244 45553220 147899999999999843
Q ss_pred cCCCC--eeeeEEEEeccccCCCCCCCCCCCCCccccccchHHHhhhhc
Q 046902 345 THGLD--FVDTEICMASLVPLSDKGGGCGGGINGMKRRNLEEKEKRHKK 391 (393)
Q Consensus 345 ~~~~~--~~~~~~y~~SL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (393)
...+ ...++.+-..++-+ ......+...+.+....++.+||.+.+
T Consensus 303 -~p~~r~~~~~~~~~~~i~v~-GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 303 -LSQGRAYGVSLPWNNSLLII-GGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp -CSSCCBSSEEEEETTEEEEE-EEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred -CCCCcccceeEEeCCEEEEE-eeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 2222 33444444444443 222333444577777777777776543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-09 Score=99.44 Aligned_cols=196 Identities=12% Similarity=0.055 Sum_probs=121.6
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeec---C--CCCccEEEEEEeCCCCeEEcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKG---N--DGDDVEVEVYSLKTNSWRRIS 184 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~---~--~~~~~~~~Vyss~t~~W~~~~ 184 (393)
..+.++||.|++|.. ++++ ...+ ...++.... .+ +|+.++.... . ......+++|+..+++|+.++
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~--~p~~--r~~~~~~~~--~~--~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLS--SQVP--KNHVSLVTK--EN--QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp TEEEEEETTTTEEEE-EECC--CCSC--SSEEEEECT--TC--CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred CceEEECCCCCeEec-CCCC--CCCC--ccceEEEEE--CC--EEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 679999999999986 4333 1111 122222221 22 3444443211 1 112234899999999999998
Q ss_pred ccCcccccccccccccccccCceeEeCceEEEeccC-----CCCCcEEEEEECCCceeeeec-CCCcccccCCceeEEEE
Q 046902 185 NLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK-----SSTRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVG 258 (393)
Q Consensus 185 ~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~-----~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~ 258 (393)
.+|. .+.....+.++|.+|.+++. ......+..||+.+.+|+.+. +|.... ....+
T Consensus 84 ~~p~------------~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------~~~~~ 145 (315)
T 4asc_A 84 PLPS------------PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVY------GHTVL 145 (315)
T ss_dssp CBSS------------CEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCB------SCEEE
T ss_pred CCCc------------chhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCccc------ceeEE
Confidence 7772 23445567899999999873 122356999999999999974 554332 23567
Q ss_pred EeCCeEEEEEEc-CCC--eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC-----cEEEE
Q 046902 259 SLEGCLCVFRFY-NLV--YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR-----EKLVW 330 (393)
Q Consensus 259 ~~~G~L~~~~~~-~~~--~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-----~~l~~ 330 (393)
..+|+|++++.. ... .-++|+++-. ...|+++..++.+. .....++ -++.++++.... ..+..
T Consensus 146 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 216 (315)
T 4asc_A 146 SHMDLVYVIGGKGSDRKCLNKMCVYDPK--KFEWKELAPMQTAR------SLFGATV-HDGRIIVAAGVTDTGLTSSAEV 216 (315)
T ss_dssp EETTEEEEECCBCTTSCBCCCEEEEETT--TTEEEECCCCSSCC------BSCEEEE-ETTEEEEEEEECSSSEEEEEEE
T ss_pred EECCEEEEEeCCCCCCcccceEEEEeCC--CCeEEECCCCCCch------hceEEEE-ECCEEEEEeccCCCCccceEEE
Confidence 799999999875 221 3467887742 46799875443321 1112222 244444443321 25999
Q ss_pred EECCCCcEEEE
Q 046902 331 FDLETNSLRTV 341 (393)
Q Consensus 331 yd~~t~~~~~v 341 (393)
||+++++|+.+
T Consensus 217 yd~~~~~W~~~ 227 (315)
T 4asc_A 217 YSITDNKWAPF 227 (315)
T ss_dssp EETTTTEEEEE
T ss_pred EECCCCeEEEC
Confidence 99999999998
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-09 Score=97.72 Aligned_cols=224 Identities=15% Similarity=0.151 Sum_probs=131.7
Q ss_pred ceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeec--CC---CCccEEEEEEe
Q 046902 101 GLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKG--ND---GDDVEVEVYSL 175 (393)
Q Consensus 101 GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~--~~---~~~~~~~Vyss 175 (393)
+.|++... ..+.++||.|++|...|.+. ..+.. .++.... . -+|+.++.... .. .....+++|+.
T Consensus 16 ~~i~~~GG-~~~~~yd~~~~~W~~~~~~~---~~~r~--~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~~~~~~~d~ 85 (318)
T 2woz_A 16 DLILLVND-TAAVAYDPMENECYLTALAE---QIPRN--HSSIVTQ--Q--NQVYVVGGLYVDEENKDQPLQSYFFQLDN 85 (318)
T ss_dssp EEEEEECS-SEEEEEETTTTEEEEEEECT---TSCSS--EEEEECS--S--SCEEEEESSCC-------CCCBEEEEEET
T ss_pred chhhhccc-cceEEECCCCCceecccCCc---cCCcc--ceEEEEE--C--CEEEEECCcccCccccCCCccccEEEEeC
Confidence 34444332 34789999999999844321 11111 1222211 1 24454543210 00 11234899999
Q ss_pred CCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCC----CCCcEEEEEECCCceeeeec-CCCcccccC
Q 046902 176 KTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS----STRSVIVAFDLVAEEFYQLP-LPDSVNVSY 250 (393)
Q Consensus 176 ~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~----~~~~~il~fD~~~e~~~~i~-lP~~~~~~~ 250 (393)
.+++|+.++.+|. .+.....+.++|.+|.+++.. .....+.+||+.+.+|+.+. +|....
T Consensus 86 ~~~~W~~~~~~p~------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--- 150 (318)
T 2woz_A 86 VSSEWVGLPPLPS------------ARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVY--- 150 (318)
T ss_dssp TTTEEEECSCBSS------------CBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEE---
T ss_pred CCCcEEECCCCCc------------cccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccc---
Confidence 9999999987772 223455678899999998642 12256999999999999984 554432
Q ss_pred CceeEEEEEeCCeEEEEEEcCC---CeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc---
Q 046902 251 ANVHVDVGSLEGCLCVFRFYNL---VYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR--- 324 (393)
Q Consensus 251 ~~~~~~l~~~~G~L~~~~~~~~---~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~--- 324 (393)
...++..+|+|++++.... ..-++|+++-. ...|+.+..++... . ....++ -++.++++...
T Consensus 151 ---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r----~--~~~~~~-~~~~iyv~GG~~~~ 218 (318)
T 2woz_A 151 ---GHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPK--KGDWKDLAPMKTPR----S--MFGVAI-HKGKIVIAGGVTED 218 (318)
T ss_dssp ---SCEEEEETTEEEEECCEESSSCBCCCEEEEETT--TTEEEEECCCSSCC----B--SCEEEE-ETTEEEEEEEEETT
T ss_pred ---ccEEEEECCEEEEEcCCCCCCCccceEEEEcCC--CCEEEECCCCCCCc----c--cceEEE-ECCEEEEEcCcCCC
Confidence 2356678999999986421 13457887742 46799875443221 1 112222 24444444321
Q ss_pred --CcEEEEEECCCCcEEEEEEecCCCC----eeeeEEEEeccccCCC
Q 046902 325 --REKLVWFDLETNSLRTVKIDTHGLD----FVDTEICMASLVPLSD 365 (393)
Q Consensus 325 --~~~l~~yd~~t~~~~~v~~~~~~~~----~~~~~~y~~SL~~~~~ 365 (393)
...+..||+++++|+.+. ..| ...+..+-..|.-+..
T Consensus 219 ~~~~~~~~yd~~~~~W~~~~----~~p~~r~~~~~~~~~~~i~v~GG 261 (318)
T 2woz_A 219 GLSASVEAFDLKTNKWEVMT----EFPQERSSISLVSLAGSLYAIGG 261 (318)
T ss_dssp EEEEEEEEEETTTCCEEECC----CCSSCCBSCEEEEETTEEEEECC
T ss_pred CccceEEEEECCCCeEEECC----CCCCcccceEEEEECCEEEEECC
Confidence 125889999999999983 233 3445555555555433
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
Probab=99.07 E-value=2.1e-11 Score=79.76 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=38.7
Q ss_pred CCCCcHHHHHHHhccCCccceeeeeecccchhhhcCChHHH
Q 046902 2 SKKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFI 42 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~ 42 (393)
+..||+|++.+||++||+++++++++|||+|+.++.++.|-
T Consensus 9 ~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW 49 (53)
T 1fs1_A 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 49 (53)
T ss_dssp CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred HHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHH
Confidence 67899999999999999999999999999999999998864
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.4e-08 Score=90.28 Aligned_cols=199 Identities=12% Similarity=0.036 Sum_probs=116.9
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCC-------------------------
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGND------------------------- 164 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~------------------------- 164 (393)
..++++||.|++|..+++++ . .+....... .++ =+|+.++......
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~--p-~~r~~~~~~-~~~-----~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHA--P-MGMAGHVTF-VHN-----GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHY 156 (357)
T ss_dssp CCEEEEETTTTEEEECSCCC--S-SCCSSEEEE-EET-----TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccEEEEeCCCCcEEECCCCC--C-cccccceEE-EEC-----CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhh
Confidence 36999999999999998765 1 111111111 122 1566665421100
Q ss_pred --------CCccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCC---CCCcEEEEEEC-
Q 046902 165 --------GDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS---STRSVIVAFDL- 232 (393)
Q Consensus 165 --------~~~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~---~~~~~il~fD~- 232 (393)
.....+++|+..+++|+.+..+|. .. ......+.++|.+|.+++.. .....+..||+
T Consensus 157 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~----------~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d 225 (357)
T 2uvk_A 157 FDKKAEDYFFNKFLLSFDPSTQQWSYAGESPW----------YG-TAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFT 225 (357)
T ss_dssp HSSCGGGGCCCCEEEEEETTTTEEEEEEECSS----------CC-CBSCEEEEETTEEEEECCEEETTEECCCEEEEECC
T ss_pred ccccccccCCcccEEEEeCCCCcEEECCCCCC----------CC-cccccEEEECCEEEEEeeecCCCcccCceEEEEec
Confidence 013589999999999999987762 11 12255678999999997641 11345788887
Q ss_pred -CCceeeeec-CCCcccccCCceeEEEEEeCCeEEEEEEcCC-------------------CeEEEEEEeecCCCCCeEE
Q 046902 233 -VAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVFRFYNL-------------------VYVDMWMMKEHAVKESWTK 291 (393)
Q Consensus 233 -~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~-------------------~~~~iW~l~~~~~~~~W~~ 291 (393)
.+.+|+.+. +|.... .....++..+|+|++++.... ...++|+++-. ...|++
T Consensus 226 ~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~--~~~W~~ 299 (357)
T 2uvk_A 226 GNNLKWNKLAPVSSPDG----VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH--NGKWDK 299 (357)
T ss_dssp ---CEEEECCCSSTTTC----CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEE
T ss_pred CCCCcEEecCCCCCCcc----cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecC--CCceee
Confidence 899999874 433221 112357888999999986321 12456776642 468999
Q ss_pred EEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC------cEEEEEECCCCcEEEE
Q 046902 292 LFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR------EKLVWFDLETNSLRTV 341 (393)
Q Consensus 292 ~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------~~l~~yd~~t~~~~~v 341 (393)
+..++.... . ..++.-++.++++...+ ..++.++++++++.+.
T Consensus 300 ~~~~p~~r~------~-~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 300 SGELSQGRA------Y-GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EEECSSCCB------S-SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred CCCCCCCcc------c-ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 876654321 1 11222355555554321 2588899999998876
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.8e-11 Score=106.58 Aligned_cols=48 Identities=17% Similarity=0.287 Sum_probs=45.7
Q ss_pred CCCCcHHHHHHHhccCCcccee-eeeecccchhhhcCChHHHHHHHhcc
Q 046902 2 SKKIPLDIITGIFCRQPVKSLL-RFRCVSKTCCSLIDSQDFIKLHLNHS 49 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~~sl~-r~r~VcK~W~~li~s~~F~~~~~~~~ 49 (393)
+..||+||+.+||+|||+++|+ ||++|||+|+++++++.|.+.++.+.
T Consensus 51 ~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 51 LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp TTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 6789999999999999999999 99999999999999999999988766
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-07 Score=88.45 Aligned_cols=275 Identities=12% Similarity=0.088 Sum_probs=138.4
Q ss_pred CCCCCcHHHHHHHhccCCccceeeeeecccchhhhcCChHHHHHHHhcccCCCCceEEEeecCCCeeeecCCCCCCCC--
Q 046902 1 MSKKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKGAHDLYALDFDTLTLGT-- 78 (393)
Q Consensus 1 ~~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (393)
+++.||+|++..||++|++++|+++.+|||+|+.++.++.+-+....+.....+.. .- . .. ...........
T Consensus 18 ~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~-~--~~--~~~~~~~~~~wk~ 91 (445)
T 2ovr_B 18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-IK-R--RK--VIKPGFIHSPWKS 91 (445)
T ss_dssp TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCC-CC-C------CCSSCCCCCHHHH
T ss_pred hhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccc-cc-c--ce--ecCCCccCCcHHH
Confidence 36789999999999999999999999999999999999988776654432110000 00 0 00 00000000000
Q ss_pred ----------cccccCC-C---CCC-CC-ccEEeeeeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEE
Q 046902 79 ----------GVQPHHH-P---LNI-GS-GTEVLGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYG 142 (393)
Q Consensus 79 ----------~~~~~~~-p---~~~-~~-~~~~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~ 142 (393)
.+..-.. + +.. .. -...+...+.+|+....+..+.|||..+++....-... .....+
T Consensus 92 ~~~~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-------~~~v~~ 164 (445)
T 2ovr_B 92 AYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH-------TGGVWS 164 (445)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCC-------SSCEEE
T ss_pred HHhhhhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCC-------CCCEEE
Confidence 0000000 0 000 11 12344455566666666788999999988754321111 122344
Q ss_pred EeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCC
Q 046902 143 FGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS 222 (393)
Q Consensus 143 ~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~ 222 (393)
+.+++ + .++... ....+.+|+..++.-.. .+. .+. ..-.++..+|.....+..
T Consensus 165 ~~~~~---~-~l~s~~-------~dg~i~vwd~~~~~~~~--~~~----------~h~--~~v~~~~~~~~~l~s~s~-- 217 (445)
T 2ovr_B 165 SQMRD---N-IIISGS-------TDRTLKVWNAETGECIH--TLY----------GHT--STVRCMHLHEKRVVSGSR-- 217 (445)
T ss_dssp EEEET---T-EEEEEE-------TTSCEEEEETTTTEEEE--EEC----------CCS--SCEEEEEEETTEEEEEET--
T ss_pred EEecC---C-EEEEEe-------CCCeEEEEECCcCcEEE--EEC----------CCC--CcEEEEEecCCEEEEEeC--
Confidence 55552 2 222222 23468889988764221 111 000 111233344444333332
Q ss_pred CCcEEEEEECCCceeee-ecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCC
Q 046902 223 TRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPT 301 (393)
Q Consensus 223 ~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (393)
...|..+|+.+.+... +..... ...-...+|...+++..+. .+.+|-++. ...+..+....
T Consensus 218 -dg~i~~wd~~~~~~~~~~~~~~~--------~v~~~~~~~~~l~~~~~dg-~i~iwd~~~------~~~~~~~~~~~-- 279 (445)
T 2ovr_B 218 -DATLRVWDIETGQCLHVLMGHVA--------AVRCVQYDGRRVVSGAYDF-MVKVWDPET------ETCLHTLQGHT-- 279 (445)
T ss_dssp -TSEEEEEESSSCCEEEEEECCSS--------CEEEEEECSSCEEEEETTS-CEEEEEGGG------TEEEEEECCCS--
T ss_pred -CCEEEEEECCCCcEEEEEcCCcc--------cEEEEEECCCEEEEEcCCC-EEEEEECCC------CcEeEEecCCC--
Confidence 3579999988765432 222111 1122233777666665544 888887653 12233332111
Q ss_pred CCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcE
Q 046902 302 RSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSL 338 (393)
Q Consensus 302 ~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~ 338 (393)
..+.++.-++..++....++.+..||+++++.
T Consensus 280 -----~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 311 (445)
T 2ovr_B 280 -----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC 311 (445)
T ss_dssp -----SCEEEEEECSSEEEEEETTSCEEEEETTTCCE
T ss_pred -----CceEEEEECCCEEEEEeCCCeEEEEECCCCCE
Confidence 01112222555555555555566677666553
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-08 Score=101.36 Aligned_cols=216 Identities=12% Similarity=0.075 Sum_probs=126.1
Q ss_pred eeceEEEeeC-----CceEEEEeccccceeccC-CCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEE
Q 046902 99 CNGLIALCNS-----VQELALFNPSTRKLKTLP-LPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEV 172 (393)
Q Consensus 99 ~~GLl~~~~~-----~~~~~V~NP~T~~~~~LP-~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~V 172 (393)
.+|.|++... ...++++||.|++|..++ +.+. ...+.....++...... +-+|+.++...........+++
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~-~~~p~~R~~hs~~~~~~--~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSS-SEVPVARMCHTFTTISR--NNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCC-SCCCCCCBSCEEEEETT--TTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCC-CCCCccccceEEEEEcc--CCEEEEEcCCCCCCCccccEEE
Confidence 4555544432 246999999999999998 5210 00111111112222210 1146666543322223456999
Q ss_pred EEeCCCCeEEccccCcccccccccccccccccCceeEe-CceEEEeccCCCCCcEEEEEECCCceeeeec----CCCccc
Q 046902 173 YSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA-GGALHWVSPKSSTRSVIVAFDLVAEEFYQLP----LPDSVN 247 (393)
Q Consensus 173 yss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~-~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~----lP~~~~ 247 (393)
|+..+++|+.+..+|. .+.....+.+ +|.+|.+++..... .+.+||+.+.+|+.+. +|....
T Consensus 473 yd~~t~~W~~~~~~p~------------~R~~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~t~~W~~~~~~g~~p~~r~ 539 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSH------------TRFRHSACSLPDGNVLILGGVTEGP-AMLLYNVTEEIFKDVTPKDEFFQNSL 539 (695)
T ss_dssp EETTTTEEEECCCCSB------------CCBSCEEEECTTSCEEEECCBCSSC-SEEEEETTTTEEEECCCSSGGGGSCC
T ss_pred EeCCCCcEEECCCCCC------------CcccceEEEEcCCEEEEECCCCCCC-CEEEEECCCCceEEccCCCCCCCccc
Confidence 9999999999987772 2234555665 99999998763333 7999999999999986 343322
Q ss_pred ccCCceeEEEEEeC---CeEEEEEEcCC----CeEEEEEEeecCCCCC------eEEEEEeeCCCCCCCcceeeEEEEEe
Q 046902 248 VSYANVHVDVGSLE---GCLCVFRFYNL----VYVDMWMMKEHAVKES------WTKLFSVQEPTPTRSFLFLRPLGYSR 314 (393)
Q Consensus 248 ~~~~~~~~~l~~~~---G~L~~~~~~~~----~~~~iW~l~~~~~~~~------W~~~~~i~~~~~~~~~~~~~~~~~~~ 314 (393)
....++++ |+|+++++... ..-++|+++-. ... |+++..++... . ...-..+..
T Consensus 540 ------~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~--~~~w~~~~~W~~~~~~p~~~---R--~~~~~~~~~ 606 (695)
T 2zwa_A 540 ------VSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYD--AENATEPITVIKKLQHPLFQ---R--YGSQIKYIT 606 (695)
T ss_dssp ------BSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEEC--TTCSSCCEEEEEEEECGGGC---C--BSCEEEEEE
T ss_pred ------ceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEcc--CCccccceEEEEcCCCCCCC---c--ccceEEEeC
Confidence 12323334 89999987521 13467777642 244 88877643211 1 112233333
Q ss_pred CCcEEEEEEc--------CcEEEEEECCCCcEEEEEE
Q 046902 315 NGVKLLLEVR--------REKLVWFDLETNSLRTVKI 343 (393)
Q Consensus 315 ~g~~i~l~~~--------~~~l~~yd~~t~~~~~v~~ 343 (393)
++.++++... ...+..||+++++|+.+.+
T Consensus 607 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 643 (695)
T 2zwa_A 607 PRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPI 643 (695)
T ss_dssp TTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCC
T ss_pred CCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEeec
Confidence 3444444321 2359999999999996644
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=6.4e-07 Score=85.79 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=37.9
Q ss_pred CCCCcHHHHHHHhccCCccceeeeeecccchhhhcCC-hHHHHH
Q 046902 2 SKKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDS-QDFIKL 44 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s-~~F~~~ 44 (393)
++.||+|++.+||+.||+++|+++.+|||+|+.++.+ +..-+.
T Consensus 15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~ 58 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKK 58 (464)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHH
T ss_pred hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3569999999999999999999999999999999998 654333
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-07 Score=89.47 Aligned_cols=284 Identities=13% Similarity=0.088 Sum_probs=141.2
Q ss_pred CCCCcHH----HHHHHhccCCccceeeeeecccchhhhcCChHHHHHHHhcccCC---------CCce-EEEeecCCCee
Q 046902 2 SKKIPLD----IITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITT---------RSNR-RLILKGAHDLY 67 (393)
Q Consensus 2 ~~~LP~D----ll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~~~~~~~~---------~~~~-~~~~~~~~~~~ 67 (393)
++.||+| |+..||+.|++++|+++.+|||+|+.++.++.+-+....+.... ...+ ..++.......
T Consensus 11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 90 (435)
T 1p22_A 11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDG 90 (435)
T ss_dssp HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC-------
T ss_pred HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCCCC
Confidence 3569999 99999999999999999999999999999887655544332100 0000 00000000000
Q ss_pred eecC-------------------CCCCCCC-cccccCCCCCCCCccEEeeeeeceEEEeeCCceEEEEeccccceeccCC
Q 046902 68 ALDF-------------------DTLTLGT-GVQPHHHPLNIGSGTEVLGSCNGLIALCNSVQELALFNPSTRKLKTLPL 127 (393)
Q Consensus 68 ~~~~-------------------~~~~~~~-~~~~~~~p~~~~~~~~~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~ 127 (393)
.... ..+.... ....+.........+..++..+.+++....+..+.|||..|++....-.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 170 (435)
T 1p22_A 91 NAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT 170 (435)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC
T ss_pred CCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc
Confidence 0000 0000000 0000000000012233444445555555567789999999887554322
Q ss_pred CCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcccccccccccccccccCce
Q 046902 128 PPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYG 207 (393)
Q Consensus 128 ~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~ 207 (393)
.. .....++.+|. . .++... ....+.+|+..++.-... +. .+ ...-.+
T Consensus 171 ~h-------~~~v~~l~~~~---~-~l~sg~-------~dg~i~vwd~~~~~~~~~--~~----------~h--~~~v~~ 218 (435)
T 1p22_A 171 GH-------TGSVLCLQYDE---R-VIITGS-------SDSTVRVWDVNTGEMLNT--LI----------HH--CEAVLH 218 (435)
T ss_dssp CC-------SSCEEEEECCS---S-EEEEEE-------TTSCEEEEESSSCCEEEE--EC----------CC--CSCEEE
T ss_pred CC-------CCcEEEEEECC---C-EEEEEc-------CCCeEEEEECCCCcEEEE--Ec----------CC--CCcEEE
Confidence 11 12234455532 2 233222 234688999887753221 11 00 011123
Q ss_pred eEeCceEEEeccCCCCCcEEEEEECCCceeeee-cCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCC
Q 046902 208 VLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQL-PLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVK 286 (393)
Q Consensus 208 v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~ 286 (393)
+..++.....+.. ...|..+|+.+..-... ...... .. .......+|...+++..+. .+.||-++..
T Consensus 219 l~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~---~~--~v~~~~~~~~~l~s~~~dg-~i~vwd~~~~--- 286 (435)
T 1p22_A 219 LRFNNGMMVTCSK---DRSIAVWDMASPTDITLRRVLVGH---RA--AVNVVDFDDKYIVSASGDR-TIKVWNTSTC--- 286 (435)
T ss_dssp EECCTTEEEEEET---TSCEEEEECSSSSCCEEEEEECCC---SS--CEEEEEEETTEEEEEETTS-EEEEEETTTC---
T ss_pred EEEcCCEEEEeeC---CCcEEEEeCCCCCCceeeeEecCC---CC--cEEEEEeCCCEEEEEeCCC-eEEEEECCcC---
Confidence 3344444333332 35788999876543211 111111 01 1122233666666665544 8999987631
Q ss_pred CCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEE
Q 046902 287 ESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLR 339 (393)
Q Consensus 287 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~ 339 (393)
..+..+.... ..+.++..+++.++....++.+..||+++++..
T Consensus 287 ---~~~~~~~~~~-------~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 287 ---EFVRTLNGHK-------RGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 329 (435)
T ss_dssp ---CEEEEEECCS-------SCEEEEEEETTEEEEEETTSCEEEEETTTCCEE
T ss_pred ---cEEEEEcCCC-------CcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEE
Confidence 2344444211 112233335677777777778999999987643
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-06 Score=87.87 Aligned_cols=106 Identities=10% Similarity=0.056 Sum_probs=70.9
Q ss_pred eEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCccc
Q 046902 111 ELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFL 190 (393)
Q Consensus 111 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~~ 190 (393)
.+.++||.|++|..++.++ ..........++..| =+|+.++.. ....+++|++.+++|+.+..++.
T Consensus 220 ~~~~yd~~t~~w~~~~~~~--~~~~~~~~~~~~~~~-----g~lyv~GG~-----~~~~v~~yd~~t~~W~~~~~~~~-- 285 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTV--TKHDMFCPGISMDGN-----GQIVVTGGN-----DAKKTSLYDSSSDSWIPGPDMQV-- 285 (656)
T ss_dssp EEEEECTTTCCBCCCEEEE--CSCCCSSCEEEECTT-----SCEEEECSS-----STTCEEEEEGGGTEEEECCCCSS--
T ss_pred EEEEEeCCCCcEEeCcccC--CCCCCccccccCCCC-----CCEEEeCCC-----CCCceEEecCcCCceeECCCCCc--
Confidence 6899999999999998765 211111111222211 245555432 12369999999999999987761
Q ss_pred ccccccccccccccCceeEe-CceEEEeccC-C--CCCcEEEEEECCCceeeee
Q 046902 191 RDFYDYLYHSLFRKGYGVLA-GGALHWVSPK-S--STRSVIVAFDLVAEEFYQL 240 (393)
Q Consensus 191 ~~~~~~~~~~~~~~~~~v~~-~G~lyw~~~~-~--~~~~~il~fD~~~e~~~~i 240 (393)
.+.....+.+ +|++|.+++. . .....+..||+.+++|..+
T Consensus 286 ----------~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~ 329 (656)
T 1k3i_A 286 ----------ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 329 (656)
T ss_dssp ----------CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred ----------cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence 2234455677 9999999873 1 1225689999999999986
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.6e-06 Score=86.16 Aligned_cols=204 Identities=10% Similarity=-0.003 Sum_probs=119.2
Q ss_pred CccEEEEEEeCCCCeEEcc-ccCcccccccccccccccccCceeEe--CceEEEeccCCC---CCcEEEEEECCCceeee
Q 046902 166 DDVEVEVYSLKTNSWRRIS-NLPRFLRDFYDYLYHSLFRKGYGVLA--GGALHWVSPKSS---TRSVIVAFDLVAEEFYQ 239 (393)
Q Consensus 166 ~~~~~~Vyss~t~~W~~~~-~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~lyw~~~~~~---~~~~il~fD~~~e~~~~ 239 (393)
....+++|+..+++|+.+. .+|... ....+.....+.+ +|.+|.+++... ....+..||+.+.+|+.
T Consensus 410 ~~~~v~~yd~~~~~W~~~~~~~p~~~-------~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~ 482 (695)
T 2zwa_A 410 RVNEILQLSIHYDKIDMKNIEVSSSE-------VPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSM 482 (695)
T ss_dssp BCCCEEEEEECSSCEEEEECCCCCSC-------CCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEE
T ss_pred CcCcEEEEECCCCeEEEeccCCCCCC-------CCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEE
Confidence 3456899999999999987 422100 0022345566788 999999987522 12469999999999999
Q ss_pred ec-CCCcccccCCceeEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCc
Q 046902 240 LP-LPDSVNVSYANVHVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGV 317 (393)
Q Consensus 240 i~-lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~ 317 (393)
+. +|.... ....+.+ +|+|+++++..... ++|+.+-. ...|+.+...... ..... ....+.+..+.+
T Consensus 483 ~~~~p~~R~------~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~--t~~W~~~~~~g~~-p~~r~-~~~a~v~~~~~~ 551 (695)
T 2zwa_A 483 IKSLSHTRF------RHSACSLPDGNVLILGGVTEGP-AMLLYNVT--EEIFKDVTPKDEF-FQNSL-VSAGLEFDPVSK 551 (695)
T ss_dssp CCCCSBCCB------SCEEEECTTSCEEEECCBCSSC-SEEEEETT--TTEEEECCCSSGG-GGSCC-BSCEEEEETTTT
T ss_pred CCCCCCCcc------cceEEEEcCCEEEEECCCCCCC-CEEEEECC--CCceEEccCCCCC-CCccc-ceeEEEEeCCCC
Confidence 84 554332 2355664 99999998765444 78888742 4679886542100 00111 122233333324
Q ss_pred EEEEEEc--------CcEEEEEECCCCc------EEEEEEecCCCC--eeeeEEEE-eccccCCCCCCCCC-CCCCcccc
Q 046902 318 KLLLEVR--------REKLVWFDLETNS------LRTVKIDTHGLD--FVDTEICM-ASLVPLSDKGGGCG-GGINGMKR 379 (393)
Q Consensus 318 ~i~l~~~--------~~~l~~yd~~t~~------~~~v~~~~~~~~--~~~~~~y~-~SL~~~~~~~~~~~-~~~~~~~~ 379 (393)
.||+... ...+..||+++++ |+.+.-. ...+ ...++.+- ..|+-+........ ...+.++.
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~-p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH-PLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC-GGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC-CCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 5555431 1359999999999 8877431 1122 34455566 56655543321111 23455555
Q ss_pred ccchHHHhh
Q 046902 380 RNLEEKEKR 388 (393)
Q Consensus 380 ~~~~~~~~~ 388 (393)
-+.+..+|.
T Consensus 631 yd~~t~~W~ 639 (695)
T 2zwa_A 631 LDPLSETLT 639 (695)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 555555554
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2e-05 Score=79.19 Aligned_cols=198 Identities=7% Similarity=0.011 Sum_probs=111.3
Q ss_pred EEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCC-----CCccEEEEEEeCCCCeEEcccc
Q 046902 112 LALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGND-----GDDVEVEVYSLKTNSWRRISNL 186 (393)
Q Consensus 112 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~-----~~~~~~~Vyss~t~~W~~~~~~ 186 (393)
+..++|.+++|..++++| . . .. +..+.+. +=+|+.++...... .....+++|+..+++|+.+..+
T Consensus 168 ~~~~dp~~~~W~~~~~~P--~-~--~~---~~av~~~--~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~ 237 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLP--I-V--PA---AAAIEPT--SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT 237 (656)
T ss_dssp CCCCCTTSCEEEEEEECS--S-C--CS---EEEEETT--TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE
T ss_pred cccCCCCCCeeeeeccCC--C-C--ce---eEEEEec--CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc
Confidence 445689999999888777 2 1 11 1222221 22566665432211 1234789999999999988766
Q ss_pred CcccccccccccccccccCc--eeEeCceEEEeccCCCCCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEe-CC
Q 046902 187 PRFLRDFYDYLYHSLFRKGY--GVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSL-EG 262 (393)
Q Consensus 187 p~~~~~~~~~~~~~~~~~~~--~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~-~G 262 (393)
|. ... ..+. .+..+|.+|.+++... ..+..||+.+.+|..+. +|... .....+.+ +|
T Consensus 238 ~~----------~~~-~~~~~~~~~~~g~lyv~GG~~~--~~v~~yd~~t~~W~~~~~~~~~R------~~~s~~~~~dg 298 (656)
T 1k3i_A 238 VT----------KHD-MFCPGISMDGNGQIVVTGGNDA--KKTSLYDSSSDSWIPGPDMQVAR------GYQSSATMSDG 298 (656)
T ss_dssp EC----------SCC-CSSCEEEECTTSCEEEECSSST--TCEEEEEGGGTEEEECCCCSSCC------SSCEEEECTTS
T ss_pred CC----------CCC-CccccccCCCCCCEEEeCCCCC--CceEEecCcCCceeECCCCCccc------cccceEEecCC
Confidence 51 111 1222 2346899999987522 36999999999999874 44332 23466777 99
Q ss_pred eEEEEEEc-CCC--eEEEEEEeecCCCCCeEEEEEeeCCCCCCC-c-----ceeeEEEEE-eCCcEEEEEEcCcEEEEEE
Q 046902 263 CLCVFRFY-NLV--YVDMWMMKEHAVKESWTKLFSVQEPTPTRS-F-----LFLRPLGYS-RNGVKLLLEVRREKLVWFD 332 (393)
Q Consensus 263 ~L~~~~~~-~~~--~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~-~-----~~~~~~~~~-~~g~~i~l~~~~~~l~~yd 332 (393)
+|++++.. ... .-++|+.+- ....|+.+........... . ....+..+. .+| .++.......+..||
T Consensus 299 ~iyv~GG~~~~~~~~~~~e~yd~--~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g-~~~~~~~~~~v~~yd 375 (656)
T 1k3i_A 299 RVFTIGGSWSGGVFEKNGEVYSP--SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKG-SVFQAGPSTAMNWYY 375 (656)
T ss_dssp CEEEECCCCCSSSCCCCEEEEET--TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGG-CEEECCSSSEEEEEE
T ss_pred eEEEEeCcccCCcccccceEeCC--CCCcceeCCCccccccccccccceeecCCceEEEECCCC-cEEEecCccceeeee
Confidence 99999873 211 123444442 1367987632111000000 0 000111121 233 233333335699999
Q ss_pred CCCCcEEEE
Q 046902 333 LETNSLRTV 341 (393)
Q Consensus 333 ~~t~~~~~v 341 (393)
+++++|...
T Consensus 376 ~~~~~w~~~ 384 (656)
T 1k3i_A 376 TSGSGDVKS 384 (656)
T ss_dssp CSTTCEEEE
T ss_pred cCCcceeec
Confidence 999997654
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.95 E-value=9e-07 Score=77.67 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=45.0
Q ss_pred CCCCcHHHHHHHhccCCccceeeeeecccchhhhcCChHHHHHHHhccc
Q 046902 2 SKKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSI 50 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~~~~~~ 50 (393)
++.||+|++..||+.|++++|+|+.+|||+||.+..++..-+.+..+..
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~ 53 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL 53 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSG
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccC
Confidence 4579999999999999999999999999999999999998888877763
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=97.41 E-value=2.3e-05 Score=71.64 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=36.6
Q ss_pred CCCCcHHHHHHHhccCCccceeeeeecccchhhhcCChH
Q 046902 2 SKKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQD 40 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~ 40 (393)
++.||+|++.+||.+||.+++.+++.|||+|+.++.+|.
T Consensus 9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~ 47 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES 47 (336)
T ss_dssp SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCST
T ss_pred hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCch
Confidence 678999999999999999999999999999999987765
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00011 Score=72.59 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=29.5
Q ss_pred CCCCCcHHHHHHHhccCC-ccceeeeeecccchhhh
Q 046902 1 MSKKIPLDIITGIFCRQP-VKSLLRFRCVSKTCCSL 35 (393)
Q Consensus 1 ~~~~LP~Dll~eIL~rLP-~~sl~r~r~VcK~W~~l 35 (393)
+++.||+|++.+||++|| .+++.+++.|||+|+.+
T Consensus 5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 367899999999999999 99999999999999988
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.31 Score=43.81 Aligned_cols=200 Identities=13% Similarity=0.021 Sum_probs=103.4
Q ss_pred eceEEEeeC-----CceEEEEeccccceec-cCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEE
Q 046902 100 NGLIALCNS-----VQELALFNPSTRKLKT-LPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVY 173 (393)
Q Consensus 100 ~GLl~~~~~-----~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vy 173 (393)
+|++.+... ...+.++||.|++... ++... ..........++.++. + ++..... ..-.+.|+
T Consensus 2 ~g~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~--n~~~lg~~~~~i~~~~---~-~lyv~~~------~~~~v~vi 69 (328)
T 3dsm_A 2 SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRA--NGFKLGDVAQSMVIRD---G-IGWIVVN------NSHVIFAI 69 (328)
T ss_dssp CEEEEEECCCTTSCCBEEEEEETTTTEEECSHHHHH--HSSCCBSCEEEEEEET---T-EEEEEEG------GGTEEEEE
T ss_pred CeEEEEecCCCCCCCceEEEEECCCCEEhhhhHhhh--cCcccCccceEEEEEC---C-EEEEEEc------CCCEEEEE
Confidence 466555542 5679999999998653 21100 0000011123344442 2 3333321 23478899
Q ss_pred EeCCCCe-EEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceee-eecCCCcccccCC
Q 046902 174 SLKTNSW-RRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFY-QLPLPDSVNVSYA 251 (393)
Q Consensus 174 ss~t~~W-~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~~~~ 251 (393)
+..+++- +.++... . ...-.+.-+|.+|..... ...|.++|+.+.+.. .++++........
T Consensus 70 D~~t~~~~~~i~~~~------------~--p~~i~~~~~g~lyv~~~~---~~~v~~iD~~t~~~~~~i~~g~~~~~~~~ 132 (328)
T 3dsm_A 70 DINTFKEVGRITGFT------------S--PRYIHFLSDEKAYVTQIW---DYRIFIINPKTYEITGYIECPDMDMESGS 132 (328)
T ss_dssp ETTTCCEEEEEECCS------------S--EEEEEEEETTEEEEEEBS---CSEEEEEETTTTEEEEEEECTTCCTTTCB
T ss_pred ECcccEEEEEcCCCC------------C--CcEEEEeCCCeEEEEECC---CCeEEEEECCCCeEEEEEEcCCccccCCC
Confidence 9988765 2332111 0 011112257888877522 368999999988765 4666541100001
Q ss_pred ceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC------
Q 046902 252 NVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR------ 325 (393)
Q Consensus 252 ~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------ 325 (393)
. ..++..+|+|++........+.++-++. . ..+.++.... ...-+.+.++|. +++....
T Consensus 133 p--~~i~~~~~~lyv~~~~~~~~v~viD~~t----~--~~~~~i~~g~------~p~~i~~~~dG~-l~v~~~~~~~~~~ 197 (328)
T 3dsm_A 133 T--EQMVQYGKYVYVNCWSYQNRILKIDTET----D--KVVDELTIGI------QPTSLVMDKYNK-MWTITDGGYEGSP 197 (328)
T ss_dssp C--CCEEEETTEEEEEECTTCCEEEEEETTT----T--EEEEEEECSS------CBCCCEECTTSE-EEEEBCCBCTTCS
T ss_pred c--ceEEEECCEEEEEcCCCCCEEEEEECCC----C--eEEEEEEcCC------CccceEEcCCCC-EEEEECCCccCCc
Confidence 1 1333478899888652233555443321 2 2334444321 122345566765 5555432
Q ss_pred -----cEEEEEECCCCcEE-EEEE
Q 046902 326 -----EKLVWFDLETNSLR-TVKI 343 (393)
Q Consensus 326 -----~~l~~yd~~t~~~~-~v~~ 343 (393)
..++.+|++|+++. .+.+
T Consensus 198 ~~~~~~~v~~id~~t~~v~~~~~~ 221 (328)
T 3dsm_A 198 YGYEAPSLYRIDAETFTVEKQFKF 221 (328)
T ss_dssp SCBCCCEEEEEETTTTEEEEEEEC
T ss_pred cccCCceEEEEECCCCeEEEEEec
Confidence 47999999999876 3444
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.14 Score=46.31 Aligned_cols=196 Identities=12% Similarity=0.122 Sum_probs=99.8
Q ss_pred eEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeE
Q 046902 102 LIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWR 181 (393)
Q Consensus 102 Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~ 181 (393)
+|+....+..+.|||..++....+.... .+......+.+.+..+.-.++... ....+.+|+..++.|.
T Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~-------~dg~v~iwd~~~~~~~ 92 (379)
T 3jrp_A 25 RLATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGTILASCS-------YDGKVLIWKEENGRWS 92 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCGGGCSEEEEEE-------TTSCEEEEEEETTEEE
T ss_pred EEEEEECCCcEEEEecCCCcceeeeEec-----CCCCcEEEEEeCCCCCCCEEEEec-------cCCEEEEEEcCCCcee
Confidence 3333334567888887743332222211 011223445555432222333332 2346889999999887
Q ss_pred EccccCcccccccccccccccccCceeEeC----ceEEEeccCCCCCcEEEEEECCCcee-eeecCCCcccccCCceeEE
Q 046902 182 RISNLPRFLRDFYDYLYHSLFRKGYGVLAG----GALHWVSPKSSTRSVIVAFDLVAEEF-YQLPLPDSVNVSYANVHVD 256 (393)
Q Consensus 182 ~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~----G~lyw~~~~~~~~~~il~fD~~~e~~-~~i~lP~~~~~~~~~~~~~ 256 (393)
.+..... +. ..-..+.++ |.+...+.. ...|..+|+.+..- ..+.+.... .. -..
T Consensus 93 ~~~~~~~----------~~--~~v~~~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~----~~-v~~ 152 (379)
T 3jrp_A 93 QIAVHAV----------HS--ASVNSVQWAPHEYGPLLLVASS---DGKVSVVEFKENGTTSPIIIDAHA----IG-VNS 152 (379)
T ss_dssp EEEEECC----------CS--SCEEEEEECCGGGCSEEEEEET---TSEEEEEECCTTSCCCEEEEECCT----TC-EEE
T ss_pred EeeeecC----------CC--cceEEEEeCCCCCCCEEEEecC---CCcEEEEecCCCCceeeEEecCCC----Cc-eEE
Confidence 6643321 00 111122222 333333332 35788888876532 111111111 00 112
Q ss_pred EEEe--------------CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeC---CcEE
Q 046902 257 VGSL--------------EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRN---GVKL 319 (393)
Q Consensus 257 l~~~--------------~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~---g~~i 319 (393)
+.-. +|.+.+++..+. .+.||-+... ...|.....+.... ....-+.+.++ +..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~--~~~~~~~~~~~~h~-----~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 153 ASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSD--AQTYVLESTLEGHS-----DWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp EEECCCC----------CTTCEEEEEETTS-CEEEEEEETT--TTEEEEEEEECCCS-----SCEEEEEECCCCSSSEEE
T ss_pred EEEcCccccccccccCCCCCCEEEEEeCCC-eEEEEEecCC--CcceeeEEEEeccc-----CcEeEEEECCCCCCCCeE
Confidence 2222 477766666554 8999999852 34576666665321 12345667777 6666
Q ss_pred EEEEcCcEEEEEECCCCc
Q 046902 320 LLEVRREKLVWFDLETNS 337 (393)
Q Consensus 320 ~l~~~~~~l~~yd~~t~~ 337 (393)
+....++.+..||+.+.+
T Consensus 225 ~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 225 ASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp EEEETTSCEEEEEESSTT
T ss_pred EEEeCCCEEEEEeCCCCC
Confidence 666666679999988863
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.44 Score=43.33 Aligned_cols=195 Identities=10% Similarity=0.081 Sum_probs=104.2
Q ss_pred eEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeE
Q 046902 102 LIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWR 181 (393)
Q Consensus 102 Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~ 181 (393)
+|+....+..+.|||..+++....-... .......++.+.|..+. .++ ... ....+.+|+..+...+
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~-~l~-s~~------~d~~i~iwd~~~~~~~ 154 (383)
T 3ei3_B 88 TVAVGSKGGDIILWDYDVQNKTSFIQGM-----GPGDAITGMKFNQFNTN-QLF-VSS------IRGATTLRDFSGSVIQ 154 (383)
T ss_dssp EEEEEEBTSCEEEEETTSTTCEEEECCC-----STTCBEEEEEEETTEEE-EEE-EEE------TTTEEEEEETTSCEEE
T ss_pred EEEEEcCCCeEEEEeCCCcccceeeecC-----CcCCceeEEEeCCCCCC-EEE-EEe------CCCEEEEEECCCCceE
Confidence 4444445678999999988766543321 11233455666653222 222 222 2457889998876655
Q ss_pred EccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEe-
Q 046902 182 RISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSL- 260 (393)
Q Consensus 182 ~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~- 260 (393)
.+..... .......-...-+|.....+.. ...|..+|+..+....+...... -..+.-.
T Consensus 155 ~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~h~~~-------v~~~~~~~ 214 (383)
T 3ei3_B 155 VFAKTDS----------WDYWYCCVDVSVSRQMLATGDS---TGRLLLLGLDGHEIFKEKLHKAK-------VTHAEFNP 214 (383)
T ss_dssp EEECCCC----------SSCCEEEEEEETTTTEEEEEET---TSEEEEEETTSCEEEEEECSSSC-------EEEEEECS
T ss_pred EEeccCC----------CCCCeEEEEECCCCCEEEEECC---CCCEEEEECCCCEEEEeccCCCc-------EEEEEECC
Confidence 5432210 0000011112224444433332 35799999966555554432211 1123222
Q ss_pred CCe-EEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEe-CCcEEEEEEcCcEEEEEECCCCcE
Q 046902 261 EGC-LCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSR-NGVKLLLEVRREKLVWFDLETNSL 338 (393)
Q Consensus 261 ~G~-L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~-~g~~i~l~~~~~~l~~yd~~t~~~ 338 (393)
+|. +.+.+..+. .+.||-+....... ..+..+.... ...-+.+.+ +|..|+....++.+..||+.+.+.
T Consensus 215 ~~~~~l~s~~~d~-~i~iwd~~~~~~~~--~~~~~~~~~~------~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 215 RCDWLMATSSVDA-TVKLWDLRNIKDKN--SYIAEMPHEK------PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp SCTTEEEEEETTS-EEEEEEGGGCCSTT--CEEEEEECSS------CEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred CCCCEEEEEeCCC-EEEEEeCCCCCccc--ceEEEecCCC------ceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 455 555555444 99999987532112 2333333221 244567778 888887777777899999998653
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.00062 Score=67.23 Aligned_cols=33 Identities=12% Similarity=0.008 Sum_probs=31.4
Q ss_pred CCCcHHHHHHHhccC-Cccceeeeeecccchhhh
Q 046902 3 KKIPLDIITGIFCRQ-PVKSLLRFRCVSKTCCSL 35 (393)
Q Consensus 3 ~~LP~Dll~eIL~rL-P~~sl~r~r~VcK~W~~l 35 (393)
..||+|++.+||++| |.+++.+++.|||+|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 479999999999999 899999999999999987
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.48 Score=48.02 Aligned_cols=196 Identities=12% Similarity=0.123 Sum_probs=100.7
Q ss_pred eEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeE
Q 046902 102 LIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWR 181 (393)
Q Consensus 102 Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~ 181 (393)
+|+....++.+.|||..++....+.... .+.....++.+.+..+.-.++... ....+.+|+..++.|.
T Consensus 23 ~latg~~dg~I~vwd~~~~~~~~~~~l~-----~h~~~V~~l~~s~~~~~~~l~s~s-------~Dg~I~vwd~~~~~~~ 90 (753)
T 3jro_A 23 RLATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGTILASCS-------YDGKVLIWKEENGRWS 90 (753)
T ss_dssp CEEEEETTTEEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCTTSCSEEEEEE-------TTSCEEEEEEETTEEE
T ss_pred eEEEEECCCcEEEEecCCCCCccceecc-----CCcCceEEEEecCCCCCCEEEEEe-------CCCeEEEEECCCCccc
Confidence 3333334567888887644333322222 012234456666553223333333 2346889999999887
Q ss_pred EccccCcccccccccccccccccCceeEeC----ceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCceeEE
Q 046902 182 RISNLPRFLRDFYDYLYHSLFRKGYGVLAG----GALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVD 256 (393)
Q Consensus 182 ~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~----G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~ 256 (393)
.+..... +. ..-.++.++ |.+...+.. ...|..+|+.+..-.. ..+.... .. -..
T Consensus 91 ~~~~~~~----------h~--~~V~~v~~sp~~~~~~l~sgs~---dg~I~vwdl~~~~~~~~~~~~~~~----~~-v~~ 150 (753)
T 3jro_A 91 QIAVHAV----------HS--ASVNSVQWAPHEYGPLLLVASS---DGKVSVVEFKENGTTSPIIIDAHA----IG-VNS 150 (753)
T ss_dssp EEEEECC----------CS--SCEEEEEECCGGGCSEEEEEET---TSEEEEEECCSSSCCCCEEEECCS----SC-EEE
T ss_pred ccccccC----------CC--CCeEEEEECCCCCCCEEEEEeC---CCcEEEEEeecCCCcceeEeecCC----Cc-eEE
Confidence 6643321 10 111122221 444444332 3578888887652211 1111110 00 112
Q ss_pred EEEe--------------CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeC---CcEE
Q 046902 257 VGSL--------------EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRN---GVKL 319 (393)
Q Consensus 257 l~~~--------------~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~---g~~i 319 (393)
+... +|.+.+++..+. .+.||-+... ...+.....+.... ....-+.+.++ |..+
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg-~I~iwd~~~~--~~~~~~~~~~~~h~-----~~V~~l~~sp~~~~~~~l 222 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSD--AQTYVLESTLEGHS-----DWVRDVAWSPTVLLRSYL 222 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTS-CEEEEEEETT--TTEEEEEEEECCCS-----SCEEEEEECCCCSSSEEE
T ss_pred EEecCcccccccccccCCCCCEEEEEECCC-eEEEEeccCC--cccceeeeeecCCC-----CcEEEEEeccCCCCCCEE
Confidence 2221 466666666544 8999999853 24566666555321 12345667777 6666
Q ss_pred EEEEcCcEEEEEECCCCc
Q 046902 320 LLEVRREKLVWFDLETNS 337 (393)
Q Consensus 320 ~l~~~~~~l~~yd~~t~~ 337 (393)
+....++.+..||+.+++
T Consensus 223 ~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 223 ASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp EEEESSSCEEEEEESSSS
T ss_pred EEEecCCEEEEecCCCCC
Confidence 666666679999998863
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.46 Score=40.75 Aligned_cols=113 Identities=13% Similarity=0.133 Sum_probs=75.8
Q ss_pred EeCceEEEeccCCCCCcEEEEEECCCcee-eeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCC
Q 046902 209 LAGGALHWVSPKSSTRSVIVAFDLVAEEF-YQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKE 287 (393)
Q Consensus 209 ~~~G~lyw~~~~~~~~~~il~fD~~~e~~-~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~ 287 (393)
+.+|.+|.-.+. .....|..+|+.+.+- ..+++|.... ...+...+++|+++...+. .+|+.+- .
T Consensus 28 ~~~~~LyestG~-~g~S~v~~vD~~tgkv~~~~~l~~~~f------geGi~~~~~~ly~ltw~~~---~v~v~D~----~ 93 (243)
T 3mbr_X 28 YLRGHLYESTGE-TGRSSVRKVDLETGRILQRAEVPPPYF------GAGIVAWRDRLIQLTWRNH---EGFVYDL----A 93 (243)
T ss_dssp EETTEEEEEECC-TTSCEEEEEETTTCCEEEEEECCTTCC------EEEEEEETTEEEEEESSSS---EEEEEET----T
T ss_pred EECCEEEEECCC-CCCceEEEEECCCCCEEEEEeCCCCcc------eeEEEEeCCEEEEEEeeCC---EEEEEEC----C
Confidence 456677665443 2346899999998766 4478876542 2356777999999864433 4455553 2
Q ss_pred CeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcE-EEEEE
Q 046902 288 SWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSL-RTVKI 343 (393)
Q Consensus 288 ~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~-~~v~~ 343 (393)
.-.++.+|+... .+.++..+|+.+++...+.++..+|++|.+. +.|.+
T Consensus 94 tl~~~~ti~~~~--------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 94 TLTPRARFRYPG--------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp TTEEEEEEECSS--------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred cCcEEEEEeCCC--------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 356777887642 2456667788888887677899999999664 45554
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.72 E-value=1.1 Score=40.40 Aligned_cols=198 Identities=12% Similarity=0.029 Sum_probs=97.6
Q ss_pred eeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 98 SCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 98 s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
+.++.|+....+..+.|||..+++........ . ..+.....++.|.|..+ + ++... ....+.+++.++
T Consensus 91 s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~--~-~~H~~~V~~v~~spdg~-~-l~sgs-------~d~~i~iwd~~~ 158 (344)
T 4gqb_B 91 VGERGILVASDSGAVELWELDENETLIVSKFC--K-YEHDDIVSTVSVLSSGT-Q-AVSGS-------KDICIKVWDLAQ 158 (344)
T ss_dssp ETTTEEEEEETTSEEEEEEECTTSSCEEEEEE--E-ECCSSCEEEEEECTTSS-E-EEEEE-------TTSCEEEEETTT
T ss_pred eCCCeEEEEECCCEEEEEeccCCCceeEeecc--c-cCCCCCEEEEEECCCCC-E-EEEEe-------CCCeEEEEECCC
Confidence 34566666656778999999998754432211 0 01122344566666432 2 22222 234578888877
Q ss_pred CCeEEccccCcccccccccccccccccCceeE--eCce-EEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCce
Q 046902 178 NSWRRISNLPRFLRDFYDYLYHSLFRKGYGVL--AGGA-LHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANV 253 (393)
Q Consensus 178 ~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~-lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~ 253 (393)
+.= +..+. .+. ..-..+. -+|. +...+.. ...|..+|+.+.+... +..+.... .
T Consensus 159 ~~~--~~~~~----------~h~--~~V~~~~~~~~~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~---~-- 216 (344)
T 4gqb_B 159 QVV--LSSYR----------AHA--AQVTCVAASPHKDSVFLSCSE---DNRILLWDTRCPKPASQIGCSAPGY---L-- 216 (344)
T ss_dssp TEE--EEEEC----------CCS--SCEEEEEECSSCTTEEEEEET---TSCEEEEETTSSSCEEECC----CC---C--
T ss_pred CcE--EEEEc----------CcC--CceEEEEecCCCCCceeeecc---ccccccccccccceeeeeecceeec---c--
Confidence 632 11111 000 0001111 2232 2222222 2468889998765433 33222111 0
Q ss_pred eEEEEE--eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEE-EEcCcEEEE
Q 046902 254 HVDVGS--LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLL-EVRREKLVW 330 (393)
Q Consensus 254 ~~~l~~--~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l-~~~~~~l~~ 330 (393)
...+.. .++.+.+.+..+. .+.||-++.. ..+.++.... ....-+++.++|..++. ...++.+..
T Consensus 217 ~~~~~~~p~~~~~l~sg~~dg-~v~~wd~~~~------~~~~~~~~h~-----~~v~~v~fsp~g~~~lasgs~D~~i~v 284 (344)
T 4gqb_B 217 PTSLAWHPQQSEVFVFGDENG-TVSLVDTKST------SCVLSSAVHS-----QCVTGLVFSPHSVPFLASLSEDCSLAV 284 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTS-EEEEEESCC--------CCEEEECCS-----SCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred ceeeeecCCCCcceEEeccCC-cEEEEECCCC------cEEEEEcCCC-----CCEEEEEEccCCCeEEEEEeCCCeEEE
Confidence 112332 2556666555444 8999976531 2223333211 12345677787755444 455667999
Q ss_pred EECCCCcEEEE
Q 046902 331 FDLETNSLRTV 341 (393)
Q Consensus 331 yd~~t~~~~~v 341 (393)
||.+++++...
T Consensus 285 wd~~~~~~~~~ 295 (344)
T 4gqb_B 285 LDSSLSELFRS 295 (344)
T ss_dssp ECTTCCEEEEE
T ss_pred EECCCCcEEEE
Confidence 99999976544
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=95.56 E-value=1.1 Score=39.30 Aligned_cols=197 Identities=11% Similarity=0.057 Sum_probs=102.9
Q ss_pred eeeceEEEeeCCceEEEEeccccceec-cCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeC
Q 046902 98 SCNGLIALCNSVQELALFNPSTRKLKT-LPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLK 176 (393)
Q Consensus 98 s~~GLl~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~ 176 (393)
+.+|-+++...+..+.|||..+++... +.... ..........+.+.+.. . .++... ....+.+|+..
T Consensus 60 ~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~-~-~l~~~~-------~d~~i~~~d~~ 127 (337)
T 1gxr_A 60 SNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLD---CLNRDNYIRSCKLLPDG-C-TLIVGG-------EASTLSIWDLA 127 (337)
T ss_dssp CSSSSEEEEECBSEEEEEETTSTTCCSCSEEEE---CSCTTSBEEEEEECTTS-S-EEEEEE-------SSSEEEEEECC
T ss_pred ecCCcEEEEcCCCeEEEEECCCCCceeeeeccc---ccCCCCcEEEEEEcCCC-C-EEEEEc-------CCCcEEEEECC
Confidence 345544444346789999988765322 11100 00112334556677643 2 222222 23578999998
Q ss_pred CCCeEEccccCcccccccccccccccccCceeE--eCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCce
Q 046902 177 TNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVL--AGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANV 253 (393)
Q Consensus 177 t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~ 253 (393)
++.......+. .+. .....+. -+|.....+.. ...|..+|+.+.+... +..... .
T Consensus 128 ~~~~~~~~~~~----------~~~--~~i~~~~~~~~~~~l~~~~~---dg~v~~~d~~~~~~~~~~~~~~~------~- 185 (337)
T 1gxr_A 128 APTPRIKAELT----------SSA--PACYALAISPDSKVCFSCCS---DGNIAVWDLHNQTLVRQFQGHTD------G- 185 (337)
T ss_dssp CC--EEEEEEE----------CSS--SCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCCSS------C-
T ss_pred CCCcceeeecc----------cCC--CceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCceeeeeecccC------c-
Confidence 88754432221 000 0011111 24544444433 2468899998765433 332111 1
Q ss_pred eEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEE
Q 046902 254 HVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFD 332 (393)
Q Consensus 254 ~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd 332 (393)
-..+... +|...++...+. .+.+|-++. ......+.... ...-+.+.++|..++....++.+..||
T Consensus 186 i~~~~~~~~~~~l~~~~~dg-~i~~~d~~~------~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~~~~~i~~~~ 252 (337)
T 1gxr_A 186 ASCIDISNDGTKLWTGGLDN-TVRSWDLRE------GRQLQQHDFTS------QIFSLGYCPTGEWLAVGMESSNVEVLH 252 (337)
T ss_dssp EEEEEECTTSSEEEEEETTS-EEEEEETTT------TEEEEEEECSS------CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eEEEEECCCCCEEEEEecCC-cEEEEECCC------CceEeeecCCC------ceEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 1123332 666666655444 899997763 12333343321 234566778888888887777799999
Q ss_pred CCCCcEEEE
Q 046902 333 LETNSLRTV 341 (393)
Q Consensus 333 ~~t~~~~~v 341 (393)
+++++...+
T Consensus 253 ~~~~~~~~~ 261 (337)
T 1gxr_A 253 VNKPDKYQL 261 (337)
T ss_dssp TTSSCEEEE
T ss_pred CCCCCeEEE
Confidence 999876544
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.45 E-value=1 Score=38.56 Aligned_cols=201 Identities=11% Similarity=0.019 Sum_probs=99.6
Q ss_pred eeeceEEEeeCCceEEEEeccc-cceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeC
Q 046902 98 SCNGLIALCNSVQELALFNPST-RKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLK 176 (393)
Q Consensus 98 s~~GLl~~~~~~~~~~V~NP~T-~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~ 176 (393)
+.+|-.++......++++|..+ ++...+.... . ......+.+.|..+ .++.... . ......+.+++..
T Consensus 50 spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~--~----~~~~~~~~~spdg~--~l~~~~~-~--~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 50 SPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGF--A----TICNNDHGISPDGA--LYAISDK-V--EFGKSAIYLLPST 118 (297)
T ss_dssp CTTSSEEEEEETTEEEEEESSSCCSCEECCCTT--C----CCBCSCCEECTTSS--EEEEEEC-T--TTSSCEEEEEETT
T ss_pred CCCCCEEEEEcCCeEEEEeCCCCCCceEecccc--c----cccccceEECCCCC--EEEEEEe-C--CCCcceEEEEECC
Confidence 3345433333466899999999 8776665332 0 01112234455432 2222221 0 1134567777777
Q ss_pred CCCeEEccccCcccccccccccccccccCceeEeCce-EEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeE
Q 046902 177 TNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHV 255 (393)
Q Consensus 177 t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~ 255 (393)
++.-+.+..... .......-+|. +++.... .....|..+|+.+.....+...... ..
T Consensus 119 ~~~~~~~~~~~~--------------~~~~~~spdg~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~-------~~ 176 (297)
T 2ojh_A 119 GGTPRLMTKNLP--------------SYWHGWSPDGKSFTYCGIR-DQVFDIYSMDIDSGVETRLTHGEGR-------ND 176 (297)
T ss_dssp CCCCEECCSSSS--------------EEEEEECTTSSEEEEEEEE-TTEEEEEEEETTTCCEEECCCSSSC-------EE
T ss_pred CCceEEeecCCC--------------ccceEECCCCCEEEEEECC-CCceEEEEEECCCCcceEcccCCCc-------cc
Confidence 766555432220 00001112443 3333322 1224577777776665544322111 11
Q ss_pred EEEE-eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC---------
Q 046902 256 DVGS-LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR--------- 325 (393)
Q Consensus 256 ~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~--------- 325 (393)
.+.- -+|...++.......+.||.++..+ ... ..+.... .....+.+.++|..|++...+
T Consensus 177 ~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~---~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 246 (297)
T 2ojh_A 177 GPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSV---ERITDSA-----YGDWFPHPSPSGDKVVFVSYDADVFDHPRD 246 (297)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTS--SCE---EECCCCS-----EEEEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred cceECCCCCEEEEEecCCCCccEEEECCCC--CCc---EEEecCC-----cccCCeEECCCCCEEEEEEcCCCCCccccc
Confidence 2222 3676555544334488999988422 222 2222111 123345677888877776532
Q ss_pred --cEEEEEECCCCcEEEE
Q 046902 326 --EKLVWFDLETNSLRTV 341 (393)
Q Consensus 326 --~~l~~yd~~t~~~~~v 341 (393)
..++.||+++++.+.+
T Consensus 247 ~~~~l~~~d~~~~~~~~~ 264 (297)
T 2ojh_A 247 LDVRVQLMDMDGGNVETL 264 (297)
T ss_dssp EEEEEEEEETTSCSCEEE
T ss_pred CceEEEEEecCCCCceee
Confidence 4599999999887666
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=95.25 E-value=1.5 Score=38.74 Aligned_cols=192 Identities=6% Similarity=0.010 Sum_probs=101.7
Q ss_pred eceEEEee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCC
Q 046902 100 NGLIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTN 178 (393)
Q Consensus 100 ~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~ 178 (393)
.+.+++.. ....+.++|+.|++....-... .... ++.+++..+ .++.... ....+.+|+..++
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-------~~~~-~~~~s~dg~--~l~~~~~------~~~~i~~~d~~~~ 72 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLG-------YDFV-DTAITSDCS--NVVVTSD------FCQTLVQIETQLE 72 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECC-------CCEE-EEEECSSSC--EEEEEES------TTCEEEEEECSSS
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEcc-------CCcc-eEEEcCCCC--EEEEEeC------CCCeEEEEECCCC
Confidence 34444443 3568999999998875432222 1122 667777554 2333221 2347889999887
Q ss_pred Ce-E-EccccCcccccccccccccccccC-ceeEeCce-EEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCce
Q 046902 179 SW-R-RISNLPRFLRDFYDYLYHSLFRKG-YGVLAGGA-LHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANV 253 (393)
Q Consensus 179 ~W-~-~~~~~p~~~~~~~~~~~~~~~~~~-~~v~~~G~-lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~ 253 (393)
.- . .+.... . ... -.+.-+|. +| ..........|..+|+.+.+... ++.....
T Consensus 73 ~~~~~~~~~~~-------------~-~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~------- 130 (331)
T 3u4y_A 73 PPKVVAIQEGQ-------------S-SMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDA------- 130 (331)
T ss_dssp SCEEEEEEECS-------------S-CCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTE-------
T ss_pred ceeEEecccCC-------------C-CccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCc-------
Confidence 64 1 111100 0 011 12223454 44 43332122289999998776543 3332211
Q ss_pred eEEEEE-eCCe-EEEEEEcCCCeEEEEEEeecCCCCCeEE-EEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc-CcEEE
Q 046902 254 HVDVGS-LEGC-LCVFRFYNLVYVDMWMMKEHAVKESWTK-LFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REKLV 329 (393)
Q Consensus 254 ~~~l~~-~~G~-L~~~~~~~~~~~~iW~l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~l~ 329 (393)
..+.. -+|+ |++........+.+|.++..+ ..... ...+... ....-+.+.++|..+++... +..+.
T Consensus 131 -~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g--~~~~~~~~~~~~~------~~~~~~~~spdg~~l~v~~~~~~~v~ 201 (331)
T 3u4y_A 131 -VGIAISPNGNGLILIDRSSANTVRRFKIDADG--VLFDTGQEFISGG------TRPFNITFTPDGNFAFVANLIGNSIG 201 (331)
T ss_dssp -EEEEECTTSSCEEEEEETTTTEEEEEEECTTC--CEEEEEEEEECSS------SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred -cceEECCCCCEEEEEecCCCceEEEEEECCCC--cEeecCCccccCC------CCccceEECCCCCEEEEEeCCCCeEE
Confidence 12333 2665 666665544239999998533 11111 1222211 12345677788887777653 45799
Q ss_pred EEECCCCcE
Q 046902 330 WFDLETNSL 338 (393)
Q Consensus 330 ~yd~~t~~~ 338 (393)
.||+++++.
T Consensus 202 v~d~~~~~~ 210 (331)
T 3u4y_A 202 ILETQNPEN 210 (331)
T ss_dssp EEECSSTTS
T ss_pred EEECCCCcc
Confidence 999998874
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=95.10 E-value=1.9 Score=39.10 Aligned_cols=188 Identities=10% Similarity=0.097 Sum_probs=101.3
Q ss_pred eeec-eEEEee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEe
Q 046902 98 SCNG-LIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSL 175 (393)
Q Consensus 98 s~~G-Ll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss 175 (393)
+.+| .|++.. .+..+.+||+.|++....-... ....++.++|..+ .++.... ....+.+|+.
T Consensus 40 s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~--------~~v~~~~~spdg~--~l~~~~~------~~~~v~v~d~ 103 (391)
T 1l0q_A 40 SPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--------SSPQGVAVSPDGK--QVYVTNM------ASSTLSVIDT 103 (391)
T ss_dssp CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--------SSEEEEEECTTSS--EEEEEET------TTTEEEEEET
T ss_pred CCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC--------CCccceEECCCCC--EEEEEEC------CCCEEEEEEC
Confidence 3344 443443 4568999999998765433222 1334566776543 2322221 2357899999
Q ss_pred CCCCeEEccccCcccccccccccccccccCceeE--eCce-EEEeccCCCCCcEEEEEECCCceeeee-cCCCcccccCC
Q 046902 176 KTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVL--AGGA-LHWVSPKSSTRSVIVAFDLVAEEFYQL-PLPDSVNVSYA 251 (393)
Q Consensus 176 ~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~-lyw~~~~~~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~ 251 (393)
.++.-...-... ....++. -+|. +|..... ...|..+|+.+.+.... ......
T Consensus 104 ~~~~~~~~~~~~---------------~~~~~~~~s~dg~~l~~~~~~---~~~v~~~d~~~~~~~~~~~~~~~~----- 160 (391)
T 1l0q_A 104 TSNTVAGTVKTG---------------KSPLGLALSPDGKKLYVTNNG---DKTVSVINTVTKAVINTVSVGRSP----- 160 (391)
T ss_dssp TTTEEEEEEECS---------------SSEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECCSSE-----
T ss_pred CCCeEEEEEeCC---------------CCcceEEECCCCCEEEEEeCC---CCEEEEEECCCCcEEEEEecCCCc-----
Confidence 887543221111 0111222 3455 4444332 35899999988765442 322111
Q ss_pred ceeEEEEE-eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE---cCcE
Q 046902 252 NVHVDVGS-LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV---RREK 327 (393)
Q Consensus 252 ~~~~~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~---~~~~ 327 (393)
..+.. -+|+..++.......+.+|-+.. ...+..+.... ...-+.+.++|..++... .+..
T Consensus 161 ---~~~~~~~dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~~~~ 225 (391)
T 1l0q_A 161 ---KGIAVTPDGTKVYVANFDSMSISVIDTVT------NSVIDTVKVEA------APSGIAVNPEGTKAYVTNVDKYFNT 225 (391)
T ss_dssp ---EEEEECTTSSEEEEEETTTTEEEEEETTT------TEEEEEEECSS------EEEEEEECTTSSEEEEEEECSSCCE
T ss_pred ---ceEEECCCCCEEEEEeCCCCEEEEEECCC------CeEEEEEecCC------CccceEECCCCCEEEEEecCcCCCc
Confidence 12222 25554434434444888887653 23344444321 234466777888888776 3567
Q ss_pred EEEEECCCCcEE
Q 046902 328 LVWFDLETNSLR 339 (393)
Q Consensus 328 l~~yd~~t~~~~ 339 (393)
+..||+++++..
T Consensus 226 v~~~d~~~~~~~ 237 (391)
T 1l0q_A 226 VSMIDTGTNKIT 237 (391)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCeEE
Confidence 999999987644
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.57 Score=40.58 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=73.2
Q ss_pred EeCceEEEeccCCCCCcEEEEEECCCcee-eeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCC
Q 046902 209 LAGGALHWVSPKSSTRSVIVAFDLVAEEF-YQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKE 287 (393)
Q Consensus 209 ~~~G~lyw~~~~~~~~~~il~fD~~~e~~-~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~ 287 (393)
+.+|.+|.-.+. .....|..+|+.+.+- ..+++|.... ...+...+++|+++...+. .+|+.+- .
T Consensus 50 ~~~~~LyestG~-~g~S~v~~vD~~Tgkv~~~~~l~~~~F------geGit~~g~~ly~ltw~~~---~v~v~D~----~ 115 (262)
T 3nol_A 50 YRNGYFYESTGL-NGRSSIRKVDIESGKTLQQIELGKRYF------GEGISDWKDKIVGLTWKNG---LGFVWNI----R 115 (262)
T ss_dssp EETTEEEEEEEE-TTEEEEEEECTTTCCEEEEEECCTTCC------EEEEEEETTEEEEEESSSS---EEEEEET----T
T ss_pred EECCEEEEECCC-CCCceEEEEECCCCcEEEEEecCCccc------eeEEEEeCCEEEEEEeeCC---EEEEEEC----c
Confidence 457777766543 2235899999998765 4467775432 2356777999999865433 3455553 2
Q ss_pred CeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCc-EEEEEE
Q 046902 288 SWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNS-LRTVKI 343 (393)
Q Consensus 288 ~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~-~~~v~~ 343 (393)
.-..+.+|+... ...++..+|+.+++...+.++..+|++|.+ ...|.+
T Consensus 116 t~~~~~ti~~~~--------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 116 NLRQVRSFNYDG--------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp TCCEEEEEECSS--------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred cCcEEEEEECCC--------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 345667777632 234555678888887656689999999865 445554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=94.65 E-value=1.7 Score=38.81 Aligned_cols=122 Identities=12% Similarity=0.037 Sum_probs=67.3
Q ss_pred eCceEEEeccCCCCCcEEEEEECCCceeeeecC-CCcccccCCceeEEEEE-eCCeEEEEEEcCCCeEEEEEEeecCCCC
Q 046902 210 AGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPL-PDSVNVSYANVHVDVGS-LEGCLCVFRFYNLVYVDMWMMKEHAVKE 287 (393)
Q Consensus 210 ~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~l-P~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~ 287 (393)
-+|.+|..... .....|..||+.+.+.+.+.. +.... .. ..++. -+|+..++.......+.+|.++..+
T Consensus 49 pdg~l~~~~~~-~~~~~v~~~~~~~g~~~~~~~~~~~~~---~p--~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g--- 119 (347)
T 3hfq_A 49 AKDCLYSVDKE-DDEGGIAAWQIDGQTAHKLNTVVAPGT---PP--AYVAVDEARQLVYSANYHKGTAEVMKIAADG--- 119 (347)
T ss_dssp TTCEEEEEEEE-TTEEEEEEEEEETTEEEEEEEEEEESC---CC--SEEEEETTTTEEEEEETTTTEEEEEEECTTS---
T ss_pred cCCeEEEEEec-CCCceEEEEEecCCcEEEeeeeecCCC---CC--EEEEECCCCCEEEEEeCCCCEEEEEEeCCCC---
Confidence 36887776542 123579999998777766532 21111 11 12333 3666444444344489999997533
Q ss_pred CeEEEEEeeCCCCCC----CcceeeEEEEEeCCcEEEEEEc-CcEEEEEECC-CCcEEEE
Q 046902 288 SWTKLFSVQEPTPTR----SFLFLRPLGYSRNGVKLLLEVR-REKLVWFDLE-TNSLRTV 341 (393)
Q Consensus 288 ~W~~~~~i~~~~~~~----~~~~~~~~~~~~~g~~i~l~~~-~~~l~~yd~~-t~~~~~v 341 (393)
....+..+......+ ......-+++.++|. +++... +..+..||++ ++++..+
T Consensus 120 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~ 178 (347)
T 3hfq_A 120 ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQ 178 (347)
T ss_dssp CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEE
T ss_pred CeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEe
Confidence 344555554321100 011233467788888 665543 4579999998 6666544
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=94.61 E-value=2.5 Score=38.21 Aligned_cols=188 Identities=13% Similarity=0.097 Sum_probs=100.6
Q ss_pred ceEEEee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCC
Q 046902 101 GLIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNS 179 (393)
Q Consensus 101 GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~ 179 (393)
..|++.. ....+.++|+.+++....-... ....++.+++..+ + ++.... ....+.+|+..++.
T Consensus 86 ~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--------~~~~~~~~s~dg~-~-l~~~~~------~~~~v~~~d~~~~~ 149 (391)
T 1l0q_A 86 KQVYVTNMASSTLSVIDTTSNTVAGTVKTG--------KSPLGLALSPDGK-K-LYVTNN------GDKTVSVINTVTKA 149 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECS--------SSEEEEEECTTSS-E-EEEEET------TTTEEEEEETTTTE
T ss_pred CEEEEEECCCCEEEEEECCCCeEEEEEeCC--------CCcceEEECCCCC-E-EEEEeC------CCCEEEEEECCCCc
Confidence 3444444 3468999999998765433222 1234566666543 2 222221 24578899988876
Q ss_pred eEEccccCcccccccccccccccccCceeE--eCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCceeEE
Q 046902 180 WRRISNLPRFLRDFYDYLYHSLFRKGYGVL--AGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVD 256 (393)
Q Consensus 180 W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~ 256 (393)
....-... .....+. -+|...+++.. ....|..+|+.+.+... +..... ...
T Consensus 150 ~~~~~~~~---------------~~~~~~~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~--------~~~ 204 (391)
T 1l0q_A 150 VINTVSVG---------------RSPKGIAVTPDGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAA--------PSG 204 (391)
T ss_dssp EEEEEECC---------------SSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSE--------EEE
T ss_pred EEEEEecC---------------CCcceEEECCCCCEEEEEeC--CCCEEEEEECCCCeEEEEEecCCC--------ccc
Confidence 54321111 0011222 24543333322 23579999998876543 232211 112
Q ss_pred EEEe-CCeEEEEEEc--CCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-cCcEEEEEE
Q 046902 257 VGSL-EGCLCVFRFY--NLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-RREKLVWFD 332 (393)
Q Consensus 257 l~~~-~G~L~~~~~~--~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~~~~l~~yd 332 (393)
+... +|...++... ....+.+|-++. ...+..+.... ...-+.+.++|..|++.. .+..+..||
T Consensus 205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~------~~~~~~~~~~~------~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGT------NKITARIPVGP------DPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEETTT------TEEEEEEECCS------SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEECCCCCEEEEEecCcCCCcEEEEECCC------CeEEEEEecCC------CccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 2222 5554444432 334888887653 23445555422 123456778888887764 456799999
Q ss_pred CCCCcEEEE
Q 046902 333 LETNSLRTV 341 (393)
Q Consensus 333 ~~t~~~~~v 341 (393)
+++++....
T Consensus 273 ~~~~~~~~~ 281 (391)
T 1l0q_A 273 TATNTITAT 281 (391)
T ss_dssp TTTTEEEEE
T ss_pred CCCCcEEEE
Confidence 999876543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.38 E-value=2.4 Score=37.84 Aligned_cols=202 Identities=11% Similarity=0.064 Sum_probs=100.0
Q ss_pred ceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCe
Q 046902 101 GLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSW 180 (393)
Q Consensus 101 GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W 180 (393)
.+|+....+..+.|||..++++..+-... ........+.+.+....-.++... ....+.+|+..++.-
T Consensus 70 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~-------~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 70 TILASCSYDGKVLIWKEENGRWSQIAVHA-----VHSASVNSVQWAPHEYGPLLLVAS-------SDGKVSVVEFKENGT 137 (379)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCGGGCSEEEEEE-------TTSEEEEEECCTTSC
T ss_pred CEEEEeccCCEEEEEEcCCCceeEeeeec-----CCCcceEEEEeCCCCCCCEEEEec-------CCCcEEEEecCCCCc
Confidence 34444445678999999998644433222 012234456666653122333322 345788899887632
Q ss_pred EEccccCcccccccccccccccccCceeEe---------------CceEEEeccCCCCCcEEEEEECCCce--eeee-cC
Q 046902 181 RRISNLPRFLRDFYDYLYHSLFRKGYGVLA---------------GGALHWVSPKSSTRSVIVAFDLVAEE--FYQL-PL 242 (393)
Q Consensus 181 ~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~---------------~G~lyw~~~~~~~~~~il~fD~~~e~--~~~i-~l 242 (393)
.....+. .+. ..-..+.. +|.+...+.. ...|..+|+.+.. +..+ .+
T Consensus 138 ~~~~~~~----------~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~ 202 (379)
T 3jrp_A 138 TSPIIID----------AHA--IGVNSASWAPATIEEDGEHNGTKESRKFVTGGA---DNLVKIWKYNSDAQTYVLESTL 202 (379)
T ss_dssp CCEEEEE----------CCT--TCEEEEEECCCC----------CTTCEEEEEET---TSCEEEEEEETTTTEEEEEEEE
T ss_pred eeeEEec----------CCC--CceEEEEEcCccccccccccCCCCCCEEEEEeC---CCeEEEEEecCCCcceeeEEEE
Confidence 1110000 000 00001111 3444444332 2468888876543 3332 22
Q ss_pred CCcccccCCceeEEEEEe-C---CeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcE
Q 046902 243 PDSVNVSYANVHVDVGSL-E---GCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVK 318 (393)
Q Consensus 243 P~~~~~~~~~~~~~l~~~-~---G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~ 318 (393)
.... .. -..+.-. + |.+.+....+. .+.||-++... ..+... .+.... ......-+.+.++|..
T Consensus 203 ~~h~----~~-v~~~~~sp~~~~~~~l~s~~~dg-~i~iwd~~~~~--~~~~~~-~~~~~~---~~~~v~~~~~s~~g~~ 270 (379)
T 3jrp_A 203 EGHS----DW-VRDVAWSPTVLLRSYLASVSQDR-TCIIWTQDNEQ--GPWKKT-LLKEEK---FPDVLWRASWSLSGNV 270 (379)
T ss_dssp CCCS----SC-EEEEEECCCCSSSEEEEEEETTS-CEEEEEESSTT--SCCEEE-ESSSSC---CSSCEEEEEECSSSCC
T ss_pred eccc----Cc-EeEEEECCCCCCCCeEEEEeCCC-EEEEEeCCCCC--ccceee-eecccc---CCCcEEEEEEcCCCCE
Confidence 2111 11 1133332 3 66666665544 89999988532 223222 122111 1112345677788887
Q ss_pred EEEEEcCcEEEEEECCC-CcEEEE
Q 046902 319 LLLEVRREKLVWFDLET-NSLRTV 341 (393)
Q Consensus 319 i~l~~~~~~l~~yd~~t-~~~~~v 341 (393)
|+....++.+..||+.+ ++++.+
T Consensus 271 l~~~~~dg~i~iw~~~~~~~~~~~ 294 (379)
T 3jrp_A 271 LALSGGDNKVTLWKENLEGKWEPA 294 (379)
T ss_dssp EEEEESSSSEEEEEEEETTEEEEE
T ss_pred EEEecCCCcEEEEeCCCCCccccc
Confidence 87777777799999984 556665
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=94.30 E-value=2.6 Score=37.12 Aligned_cols=199 Identities=14% Similarity=0.010 Sum_probs=99.8
Q ss_pred eEEEeeCCceEEEEec-cccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCC-
Q 046902 102 LIALCNSVQELALFNP-STRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNS- 179 (393)
Q Consensus 102 Ll~~~~~~~~~~V~NP-~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~- 179 (393)
+|+....+..+.+||. .+++...+.... .......+.+.+ +.+ ++... ....+.+|+.++..
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------~~~~v~~l~~~~--~~~-l~s~~-------~d~~i~iwd~~~~~~ 134 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPSFQALTNNE------ANLGICRICKYG--DDK-LIAAS-------WDGLIEVIDPRNYGD 134 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSSEEECBSCC------CCSCEEEEEEET--TTE-EEEEE-------TTSEEEEECHHHHTT
T ss_pred EEEEEcCCCeEEEEEeccCCceEeccccC------CCCceEEEEeCC--CCE-EEEEc-------CCCeEEEEccccccc
Confidence 4555556778999999 888876665411 112344566777 333 33222 23467788766400
Q ss_pred ------eEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCC-ce--eeeecCCCcccccC
Q 046902 180 ------WRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVA-EE--FYQLPLPDSVNVSY 250 (393)
Q Consensus 180 ------W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~-e~--~~~i~lP~~~~~~~ 250 (393)
.+.+..+. . .....++..++.-...+.. ...|..+|+.+ .. ......+...
T Consensus 135 ~~~~~~~~~~~~~~------------~-~~~v~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~---- 194 (342)
T 1yfq_A 135 GVIAVKNLNSNNTK------------V-KNKIFTMDTNSSRLIVGMN---NSQVQWFRLPLCEDDNGTIEESGLKY---- 194 (342)
T ss_dssp BCEEEEESCSSSSS------------S-CCCEEEEEECSSEEEEEES---TTEEEEEESSCCTTCCCEEEECSCSS----
T ss_pred ccccccCCeeeEEe------------e-CCceEEEEecCCcEEEEeC---CCeEEEEECCccccccceeeecCCCC----
Confidence 11111111 0 0111123232222222222 35799999987 33 3333322211
Q ss_pred CceeEEEEEe--CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCC----CCcceeeEEEEEeCCcEEEEEEc
Q 046902 251 ANVHVDVGSL--EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPT----RSFLFLRPLGYSRNGVKLLLEVR 324 (393)
Q Consensus 251 ~~~~~~l~~~--~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~----~~~~~~~~~~~~~~g~~i~l~~~ 324 (393)
. -..+... +|.+.++...+. .+.||.++..+..........+...... .......-+.+.++|..|+....
T Consensus 195 -~-i~~i~~~~~~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 271 (342)
T 1yfq_A 195 -Q-IRDVALLPKEQEGYACSSIDG-RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS 271 (342)
T ss_dssp -C-EEEEEECSGGGCEEEEEETTS-EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET
T ss_pred -c-eeEEEECCCCCCEEEEEecCC-cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC
Confidence 1 1233433 567666666544 9999998754111001122222221100 00112345677778887777776
Q ss_pred CcEEEEEECCCCcEE
Q 046902 325 REKLVWFDLETNSLR 339 (393)
Q Consensus 325 ~~~l~~yd~~t~~~~ 339 (393)
++.+..||+++++..
T Consensus 272 dg~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 272 DGIISCWNLQTRKKI 286 (342)
T ss_dssp TSCEEEEETTTTEEE
T ss_pred CceEEEEcCccHhHh
Confidence 778999999988753
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.77 Score=41.50 Aligned_cols=189 Identities=13% Similarity=0.066 Sum_probs=87.1
Q ss_pred CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCC-eEEcccc
Q 046902 108 SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNS-WRRISNL 186 (393)
Q Consensus 108 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~-W~~~~~~ 186 (393)
.+..+.|||..++.+..+-... .+......+.+.+..+ + ++... ....+.+|+..++. |.....+
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~s~~~~-~-l~s~s-------~d~~v~vwd~~~~~~~~~~~~~ 96 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFS-----DHDKIVTCVDWAPKSN-R-IVTCS-------QDRNAYVYEKRPDGTWKQTLVL 96 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBC-----CCSSCEEEEEECTTTC-C-EEEEE-------TTSSEEEC------CCCCEEEC
T ss_pred CCCEEEEEEccCCceEEEEEEe-----cCCceEEEEEEeCCCC-E-EEEEe-------CCCeEEEEEcCCCCceeeeeEe
Confidence 4567889999887544443332 1122345566766532 2 22222 23357888888776 5433222
Q ss_pred CcccccccccccccccccCceeEe--CceEEEeccCCCCCcEEEEEECCCce----eeeecCCCcccccCCceeEEEEEe
Q 046902 187 PRFLRDFYDYLYHSLFRKGYGVLA--GGALHWVSPKSSTRSVIVAFDLVAEE----FYQLPLPDSVNVSYANVHVDVGSL 260 (393)
Q Consensus 187 p~~~~~~~~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~il~fD~~~e~----~~~i~lP~~~~~~~~~~~~~l~~~ 260 (393)
. .+. ..-..+.+ +|.....+.. ...|..+|+.+.+ ...+..|.. .. -..+.-.
T Consensus 97 ~----------~~~--~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~h~-----~~-v~~~~~~ 155 (377)
T 3dwl_C 97 L----------RLN--RAATFVRWSPNEDKFAVGSG---ARVISVCYFEQENDWWVSKHLKRPLR-----ST-ILSLDWH 155 (377)
T ss_dssp C----------CCS--SCEEEEECCTTSSCCEEEES---SSCEEECCC-----CCCCEEECSSCC-----SC-EEEEEEC
T ss_pred c----------ccC--CceEEEEECCCCCEEEEEec---CCeEEEEEECCcccceeeeEeecccC-----CC-eEEEEEc
Confidence 1 000 00111111 3433323222 2467888887664 233333211 11 1133322
Q ss_pred -CCeEEEEEEcCCCeEEEEEEeecCC-----CCCe-------EEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcE
Q 046902 261 -EGCLCVFRFYNLVYVDMWMMKEHAV-----KESW-------TKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREK 327 (393)
Q Consensus 261 -~G~L~~~~~~~~~~~~iW~l~~~~~-----~~~W-------~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~ 327 (393)
+|.+.+....+. .+.||-+...+. ...| ..+..+ .......-+.+.++|..|+....++.
T Consensus 156 ~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~~~~~d~~ 228 (377)
T 3dwl_C 156 PNNVLLAAGCADR-KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY------PSGGWVHAVGFSPSGNALAYAGHDSS 228 (377)
T ss_dssp TTSSEEEEEESSS-CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC------CCSSSEEEEEECTTSSCEEEEETTTE
T ss_pred CCCCEEEEEeCCC-EEEEEEEEecccCCCccccccccccchhhhhhcc------cCCceEEEEEECCCCCEEEEEeCCCc
Confidence 666666555544 899999853210 1122 122222 11112445677788887777777778
Q ss_pred EEEEECCCCcE
Q 046902 328 LVWFDLETNSL 338 (393)
Q Consensus 328 l~~yd~~t~~~ 338 (393)
+..||+.+++.
T Consensus 229 i~iwd~~~~~~ 239 (377)
T 3dwl_C 229 VTIAYPSAPEQ 239 (377)
T ss_dssp EC-CEECSTTS
T ss_pred EEEEECCCCCC
Confidence 99999998764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=94.15 E-value=3.3 Score=37.80 Aligned_cols=191 Identities=9% Similarity=0.073 Sum_probs=98.7
Q ss_pred eceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCC
Q 046902 100 NGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNS 179 (393)
Q Consensus 100 ~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~ 179 (393)
++.++....+..+.|||..+++...+-... .......+.+.+.. .+ ++... ....+.+|+..++.
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~------~~~~v~~v~~s~~~-~~--l~~~~------~dg~i~iwd~~~~~ 167 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVSALAETD------ESTYVASVKWSHDG-SF--LSVGL------GNGLVDIYDVESQT 167 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEEEEEECC------TTCCEEEEEECTTS-SE--EEEEE------TTSCEEEEETTTCC
T ss_pred CCCEEEEECCCeEEEeeCCCCcEeEeeecC------CCCCEEEEEECCCC-CE--EEEEC------CCCeEEEEECcCCe
Confidence 344444445778999999999876544332 12234556676633 33 22222 23468899988765
Q ss_pred eEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEE
Q 046902 180 WRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGS 259 (393)
Q Consensus 180 W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~ 259 (393)
-... +. .+ ...-..+..+|.+...+.. ...|..+|+....-....+.... .. -..+..
T Consensus 168 ~~~~--~~----------~~--~~~v~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~----~~-v~~~~~ 225 (401)
T 4aez_A 168 KLRT--MA----------GH--QARVGCLSWNRHVLSSGSR---SGAIHHHDVRIANHQIGTLQGHS----SE-VCGLAW 225 (401)
T ss_dssp EEEE--EC----------CC--SSCEEEEEEETTEEEEEET---TSEEEEEETTSSSCEEEEEECCS----SC-EEEEEE
T ss_pred EEEE--ec----------CC--CCceEEEEECCCEEEEEcC---CCCEEEEecccCcceeeEEcCCC----CC-eeEEEE
Confidence 3221 11 00 0111234445654444433 36899999974332221111111 11 112322
Q ss_pred e-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE---cCcEEEEEECCC
Q 046902 260 L-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV---RREKLVWFDLET 335 (393)
Q Consensus 260 ~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~---~~~~l~~yd~~t 335 (393)
. +|.+.+++..+. .+.||-+... .....+.... ....-+.+.+++..++... .++.+..||+.+
T Consensus 226 ~~~~~~l~s~~~d~-~v~iwd~~~~------~~~~~~~~~~-----~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 226 RSDGLQLASGGNDN-VVQIWDARSS------IPKFTKTNHN-----AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293 (401)
T ss_dssp CTTSSEEEEEETTS-CEEEEETTCS------SEEEEECCCS-----SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred cCCCCEEEEEeCCC-eEEEccCCCC------CccEEecCCc-----ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence 2 666666665544 8999987641 1222332111 1234567777665555543 356799999988
Q ss_pred CcEE
Q 046902 336 NSLR 339 (393)
Q Consensus 336 ~~~~ 339 (393)
++..
T Consensus 294 ~~~~ 297 (401)
T 4aez_A 294 GARV 297 (401)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 7644
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=94.14 E-value=2.7 Score=36.72 Aligned_cols=201 Identities=10% Similarity=0.065 Sum_probs=98.1
Q ss_pred eceEEEee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCC
Q 046902 100 NGLIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTN 178 (393)
Q Consensus 100 ~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~ 178 (393)
+|-|+..+ ....++.++|.|++...+..+. ...++.+++..+ ++... ...+.+|+..++
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~---------~~~~i~~~~dG~---l~v~~--------~~~l~~~d~~~g 83 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQRVTMDA---------PVSSVALRQSGG---YVATI--------GTKFCALNWKEQ 83 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEEEEECSS---------CEEEEEEBTTSS---EEEEE--------TTEEEEEETTTT
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEeCCC---------ceEEEEECCCCC---EEEEE--------CCeEEEEECCCC
Confidence 45555554 4568999999998765543322 124566776544 22211 236888999999
Q ss_pred CeEEccccCcccccccccccccccccCceeEeCceEEEeccCC--------CCCcEEEEEECCCceeeeecCCCcccccC
Q 046902 179 SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS--------STRSVIVAFDLVAEEFYQLPLPDSVNVSY 250 (393)
Q Consensus 179 ~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~--------~~~~~il~fD~~~e~~~~i~lP~~~~~~~ 250 (393)
.++.+...+... .......-.+.-+|.+|+-.... .....|..+|.... ...+. ....
T Consensus 84 ~~~~~~~~~~~~--------~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~--~~~~--- 149 (297)
T 3g4e_A 84 SAVVLATVDNDK--------KNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYF--DQVD--- 149 (297)
T ss_dssp EEEEEEECCTTC--------SSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEE--EEES---
T ss_pred cEEEEEecCCCC--------CCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEe--eccc---
Confidence 887764332100 00001111122368866543211 12357888887532 22211 0110
Q ss_pred CceeEEEEEe-CCe-EEEEEEcCCCeEEEEEEeecCCCCCeEEEEEe-eCCCCCCCcceeeEEEEEeCCcEEEEEE-cCc
Q 046902 251 ANVHVDVGSL-EGC-LCVFRFYNLVYVDMWMMKEHAVKESWTKLFSV-QEPTPTRSFLFLRPLGYSRNGVKLLLEV-RRE 326 (393)
Q Consensus 251 ~~~~~~l~~~-~G~-L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i-~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~~~ 326 (393)
. .-.++.. +|+ |+++..... .+.+|.++.. .........+ .... ......-+++.++|. |++.. .+.
T Consensus 150 ~--pngi~~spdg~~lyv~~~~~~-~i~~~~~d~~--~G~~~~~~~~~~~~~---~~~~p~g~~~d~~G~-lwva~~~~~ 220 (297)
T 3g4e_A 150 I--SNGLDWSLDHKIFYYIDSLSY-SVDAFDYDLQ--TGQISNRRSVYKLEK---EEQIPDGMCIDAEGK-LWVACYNGG 220 (297)
T ss_dssp B--EEEEEECTTSCEEEEEEGGGT-EEEEEEECTT--TCCEEEEEEEEECCG---GGCEEEEEEEBTTSC-EEEEEETTT
T ss_pred c--ccceEEcCCCCEEEEecCCCC-cEEEEeccCC--CCcccCcEEEEECCC---CCCCCCeeEECCCCC-EEEEEcCCC
Confidence 0 1123333 554 666654433 5655555311 1223221111 1111 011223355566775 66554 456
Q ss_pred EEEEEECCCCc-EEEEEE
Q 046902 327 KLVWFDLETNS-LRTVKI 343 (393)
Q Consensus 327 ~l~~yd~~t~~-~~~v~~ 343 (393)
.+..||++|++ ...+..
T Consensus 221 ~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp EEEEECTTTCCEEEEEEC
T ss_pred EEEEEcCCCceEEEEEEC
Confidence 79999999765 455544
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=94.05 E-value=2.9 Score=36.72 Aligned_cols=98 Identities=9% Similarity=0.082 Sum_probs=49.7
Q ss_pred cEEEEEECCCceeee-ecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCC---
Q 046902 225 SVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTP--- 300 (393)
Q Consensus 225 ~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~--- 300 (393)
..|..+|+.+..... +...... ..+....+...++...+ ..+.||-++.. .....+.....
T Consensus 237 g~i~iwd~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~~~~~d-~~i~iwd~~~~------~~~~~~~~~~~~~~ 301 (340)
T 4aow_A 237 GQAMLWDLNEGKHLYTLDGGDII--------NALCFSPNRYWLCAATG-PSIKIWDLEGK------IIVDELKQEVISTS 301 (340)
T ss_dssp CEEEEEETTTTEEEEEEECSSCE--------EEEEECSSSSEEEEEET-TEEEEEETTTT------EEEEEECCC-----
T ss_pred CeEEEEEeccCceeeeecCCceE--------EeeecCCCCceeeccCC-CEEEEEECCCC------eEEEeccccceeee
Confidence 578889988765432 2222111 12333333333333333 38888876521 12222221110
Q ss_pred -CCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCc
Q 046902 301 -TRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNS 337 (393)
Q Consensus 301 -~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~ 337 (393)
........-+++.++|..|+-...++.+..||++|++
T Consensus 302 ~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 302 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 0011123446777888877777777789999999875
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=93.98 E-value=3.2 Score=36.96 Aligned_cols=196 Identities=8% Similarity=-0.099 Sum_probs=103.3
Q ss_pred eeceEEEee-CCceEEEEeccccce-eccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeC
Q 046902 99 CNGLIALCN-SVQELALFNPSTRKL-KTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLK 176 (393)
Q Consensus 99 ~~GLl~~~~-~~~~~~V~NP~T~~~-~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~ 176 (393)
.++.+.+.. ....+.|+|+.|++. ..+|... ...++.+++. . ++..... ....+.+++..
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~---------~p~~i~~~~~--g-~lyv~~~------~~~~v~~iD~~ 113 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFT---------SPRYIHFLSD--E-KAYVTQI------WDYRIFIINPK 113 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCS---------SEEEEEEEET--T-EEEEEEB------SCSEEEEEETT
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCC---------CCcEEEEeCC--C-eEEEEEC------CCCeEEEEECC
Confidence 455555444 346799999999886 4565322 1234555443 2 4544331 13468889988
Q ss_pred CCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCceeE
Q 046902 177 TNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHV 255 (393)
Q Consensus 177 t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~ 255 (393)
+++-...-..... .........-+..+|.+|..... ....|.++|+.+.+... ++...... .+
T Consensus 114 t~~~~~~i~~g~~--------~~~~~~p~~i~~~~~~lyv~~~~--~~~~v~viD~~t~~~~~~i~~g~~p~------~i 177 (328)
T 3dsm_A 114 TYEITGYIECPDM--------DMESGSTEQMVQYGKYVYVNCWS--YQNRILKIDTETDKVVDELTIGIQPT------SL 177 (328)
T ss_dssp TTEEEEEEECTTC--------CTTTCBCCCEEEETTEEEEEECT--TCCEEEEEETTTTEEEEEEECSSCBC------CC
T ss_pred CCeEEEEEEcCCc--------cccCCCcceEEEECCEEEEEcCC--CCCEEEEEECCCCeEEEEEEcCCCcc------ce
Confidence 8753321111100 00000111122367788776431 13589999999876543 44432221 11
Q ss_pred EEEEeCCeEEEEEEcCCC-------eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEE
Q 046902 256 DVGSLEGCLCVFRFYNLV-------YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKL 328 (393)
Q Consensus 256 ~l~~~~G~L~~~~~~~~~-------~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l 328 (393)
. ..-+|+++++...... .-.|++++.. .. +.+.++....- ....-+++.++|+.+|+... .+
T Consensus 178 ~-~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~--t~--~v~~~~~~~~g----~~p~~la~~~d~~~lyv~~~--~v 246 (328)
T 3dsm_A 178 V-MDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE--TF--TVEKQFKFKLG----DWPSEVQLNGTRDTLYWINN--DI 246 (328)
T ss_dssp E-ECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT--TT--EEEEEEECCTT----CCCEEEEECTTSCEEEEESS--SE
T ss_pred E-EcCCCCEEEEECCCccCCccccCCceEEEEECC--CC--eEEEEEecCCC----CCceeEEEecCCCEEEEEcc--EE
Confidence 1 2237888877643200 1345555531 12 23334443210 12345677777888888644 69
Q ss_pred EEEECCCCcEE
Q 046902 329 VWFDLETNSLR 339 (393)
Q Consensus 329 ~~yd~~t~~~~ 339 (393)
+.+|++++++.
T Consensus 247 ~~~d~~t~~~~ 257 (328)
T 3dsm_A 247 WRMPVEADRVP 257 (328)
T ss_dssp EEEETTCSSCC
T ss_pred EEEECCCCcee
Confidence 99999998763
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=93.90 E-value=4 Score=37.76 Aligned_cols=186 Identities=10% Similarity=0.044 Sum_probs=97.9
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..++++|..|++...+.... ....++.+.|..+ +++.... ......+.+++..++..+.+......
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~--------~~~~~~~~spdg~--~la~~~~----~~g~~~i~~~d~~~~~~~~l~~~~~~ 268 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFP--------RHNGAPAFSPDGS--KLAFALS----KTGSLNLYVMDLASGQIRQVTDGRSN 268 (415)
T ss_dssp CEEEEEETTTCCEEEEECCS--------SCEEEEEECTTSS--EEEEEEC----TTSSCEEEEEETTTCCEEECCCCSSC
T ss_pred cEEEEEECCCCcEEEeecCC--------CcccCEEEcCCCC--EEEEEEe----cCCCceEEEEECCCCCEEeCcCCCCc
Confidence 47999999999887665433 1234566666533 2332221 11345788899988877665432200
Q ss_pred cccccccccccccccCceeEeCce-EEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEE-eCCeEEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGS-LEGCLCVF 267 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~-~~G~L~~~ 267 (393)
.......-+|. +++.+.. .....|..+|+.+.+...+..... ....+.- -+|+..++
T Consensus 269 -------------~~~~~~spdg~~l~~~s~~-~g~~~i~~~d~~~~~~~~l~~~~~-------~~~~~~~spdG~~l~~ 327 (415)
T 2hqs_A 269 -------------NTEPTWFPDSQNLAFTSDQ-AGRPQVYKVNINGGAPQRITWEGS-------QNQDADVSSDGKFMVM 327 (415)
T ss_dssp -------------EEEEEECTTSSEEEEEECT-TSSCEEEEEETTSSCCEECCCSSS-------EEEEEEECTTSSEEEE
T ss_pred -------------ccceEECCCCCEEEEEECC-CCCcEEEEEECCCCCEEEEecCCC-------cccCeEECCCCCEEEE
Confidence 00111112554 4444322 233578899998876554432211 1112222 26664444
Q ss_pred EEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCc---EEEEEECCCCcEEEE
Q 046902 268 RFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRRE---KLVWFDLETNSLRTV 341 (393)
Q Consensus 268 ~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~---~l~~yd~~t~~~~~v 341 (393)
.........|++++-.. .... .+.... ....+.+.++|..|++...+. .|+.+|++++..+.+
T Consensus 328 ~~~~~g~~~i~~~d~~~--~~~~---~l~~~~------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l 393 (415)
T 2hqs_A 328 VSSNGGQQHIAKQDLAT--GGVQ---VLSSTF------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 393 (415)
T ss_dssp EEECSSCEEEEEEETTT--CCEE---ECCCSS------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred EECcCCceEEEEEECCC--CCEE---EecCCC------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEe
Confidence 43322233444444211 2222 222111 234567788988777765443 699999999988776
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=93.85 E-value=3.9 Score=37.51 Aligned_cols=192 Identities=15% Similarity=0.105 Sum_probs=102.3
Q ss_pred eeeceEEEee-CCceEEEEeccccceec-cCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEe
Q 046902 98 SCNGLIALCN-SVQELALFNPSTRKLKT-LPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSL 175 (393)
Q Consensus 98 s~~GLl~~~~-~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss 175 (393)
+.+|-+++.. .+..+.+||+.+++... ++... ....++.+++..+ .++.... ....+.+|+.
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~l~~~~~------~~~~i~~~d~ 241 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG--------KWSKILLYDPIRD--LVYCSNW------ISEDISVIDR 241 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS--------SSEEEEEEETTTT--EEEEEET------TTTEEEEEET
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC--------CCeeEEEEcCCCC--EEEEEec------CCCcEEEEEC
Confidence 4466555554 35689999998876443 33211 1234566776543 2322221 2347889999
Q ss_pred CCCCeEEccccCcccccccccccccccccCceeE--eCceEEEeccC-CC----CCcEEEEEECCCceeeee-cCCCccc
Q 046902 176 KTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVL--AGGALHWVSPK-SS----TRSVIVAFDLVAEEFYQL-PLPDSVN 247 (393)
Q Consensus 176 ~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lyw~~~~-~~----~~~~il~fD~~~e~~~~i-~lP~~~~ 247 (393)
+++.....-... . ...++. -+|...+.+.. .. ....|..+|+.+.+.... ..+..
T Consensus 242 ~~~~~~~~~~~~------------~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~-- 304 (433)
T 3bws_A 242 KTKLEIRKTDKI------------G---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGN-- 304 (433)
T ss_dssp TTTEEEEECCCC------------S---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEEC--
T ss_pred CCCcEEEEecCC------------C---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCC--
Confidence 887543321111 0 011222 24544444432 11 235799999987755432 11111
Q ss_pred ccCCceeEEEEE-eCC-eEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC
Q 046902 248 VSYANVHVDVGS-LEG-CLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR 325 (393)
Q Consensus 248 ~~~~~~~~~l~~-~~G-~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~ 325 (393)
...+.. -+| .|++.... ...+.+|-++. ...+..+.... ...-+++.++|..++.....
T Consensus 305 ------~~~~~~~~~g~~l~~~~~~-~~~v~v~d~~~------~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 305 ------KRHIVSGNTENKIYVSDMC-CSKIEVYDLKE------KKVQKSIPVFD------KPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp ------EEEEEECSSTTEEEEEETT-TTEEEEEETTT------TEEEEEEECSS------SEEEEEECTTSSEEEEEECC
T ss_pred ------cceEEECCCCCEEEEEecC-CCEEEEEECCC------CcEEEEecCCC------CCCeEEEcCCCCEEEEEecC
Confidence 112222 255 45555443 44899997763 23444444321 23456777888878877643
Q ss_pred ---------------cEEEEEECCCCcEEEE
Q 046902 326 ---------------EKLVWFDLETNSLRTV 341 (393)
Q Consensus 326 ---------------~~l~~yd~~t~~~~~v 341 (393)
+.+..||+++++....
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF 396 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEETTTTEEEEE
T ss_pred CCccccccccccccceEEEEEECCCCcEEEE
Confidence 3799999999875543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=93.73 E-value=3 Score=35.86 Aligned_cols=203 Identities=10% Similarity=0.083 Sum_probs=102.1
Q ss_pred eeeceEEEee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeC
Q 046902 98 SCNGLIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLK 176 (393)
Q Consensus 98 s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~ 176 (393)
+.+|-+.+.+ ....+.++||..+....++... ..........++.+++..+ +++..... ....+.+|+..
T Consensus 38 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~--~~~~~~~~p~~i~~~~~~g--~l~v~~~~-----~~~~i~~~d~~ 108 (286)
T 1q7f_A 38 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECG--KRDSQLLYPNRVAVVRNSG--DIIVTERS-----PTHQIQIYNQY 108 (286)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBS--SSTTCBSSEEEEEEETTTT--EEEEEECG-----GGCEEEEECTT
T ss_pred CCCCCEEEEECCCCEEEEECCCCcEEEEecccC--CCcccccCceEEEEEcCCC--eEEEEcCC-----CCCEEEEECCC
Confidence 3456665554 3457999998866655555422 1111122345666653333 23322210 13467788843
Q ss_pred CCCeEEccccCcccccccccccccccccCceeE--eCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCcee
Q 046902 177 TNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVL--AGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVH 254 (393)
Q Consensus 177 t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~ 254 (393)
...-+.+.... . ....++. -+|.+|..... ...|..||...+....+..+.... . .
T Consensus 109 g~~~~~~~~~~------------~--~~~~~i~~~~~g~l~v~~~~---~~~i~~~~~~g~~~~~~~~~~~~~---~--p 166 (286)
T 1q7f_A 109 GQFVRKFGATI------------L--QHPRGVTVDNKGRIIVVECK---VMRVIIFDQNGNVLHKFGCSKHLE---F--P 166 (286)
T ss_dssp SCEEEEECTTT------------C--SCEEEEEECTTSCEEEEETT---TTEEEEECTTSCEEEEEECTTTCS---S--E
T ss_pred CcEEEEecCcc------------C--CCceEEEEeCCCCEEEEECC---CCEEEEEcCCCCEEEEeCCCCccC---C--c
Confidence 32222221111 0 1112233 36887765432 357999998776666554432221 1 1
Q ss_pred EEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-cCc-EEEEE
Q 046902 255 VDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-RRE-KLVWF 331 (393)
Q Consensus 255 ~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~~~-~l~~y 331 (393)
..++.. +|.|++...... .+.+|-.+ ... +..+.... ......-+++.++|. +++.. .+. .+..|
T Consensus 167 ~~i~~~~~g~l~v~~~~~~-~i~~~~~~-----g~~--~~~~~~~g---~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~ 234 (286)
T 1q7f_A 167 NGVVVNDKQEIFISDNRAH-CVKVFNYE-----GQY--LRQIGGEG---ITNYPIGVGINSNGE-ILIADNHNNFNLTIF 234 (286)
T ss_dssp EEEEECSSSEEEEEEGGGT-EEEEEETT-----CCE--EEEESCTT---TSCSEEEEEECTTCC-EEEEECSSSCEEEEE
T ss_pred EEEEECCCCCEEEEECCCC-EEEEEcCC-----CCE--EEEEccCC---ccCCCcEEEECCCCC-EEEEeCCCCEEEEEE
Confidence 234443 688877665433 77776432 122 22333211 011233456666775 55554 333 79999
Q ss_pred ECCCCcEEEEEE
Q 046902 332 DLETNSLRTVKI 343 (393)
Q Consensus 332 d~~t~~~~~v~~ 343 (393)
|.+++.+..+..
T Consensus 235 ~~~g~~~~~~~~ 246 (286)
T 1q7f_A 235 TQDGQLISALES 246 (286)
T ss_dssp CTTSCEEEEEEE
T ss_pred CCCCCEEEEEcc
Confidence 998887777754
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=93.67 E-value=1.4 Score=38.17 Aligned_cols=110 Identities=9% Similarity=0.006 Sum_probs=71.4
Q ss_pred EeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCC
Q 046902 209 LAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKE 287 (393)
Q Consensus 209 ~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~ 287 (393)
+.+|.||.-... ...|..+|+++.+-.. + +|.... .-.+...+++|+++...+. .+|+.+- .
T Consensus 62 ~~~~~Ly~stG~---~g~v~~iD~~Tgkv~~~~-l~~~~F------geGit~~g~~Ly~ltw~~~---~v~V~D~----~ 124 (268)
T 3nok_A 62 FHQGHFFESTGH---QGTLRQLSLESAQPVWME-RLGNIF------AEGLASDGERLYQLTWTEG---LLFTWSG----M 124 (268)
T ss_dssp EETTEEEEEETT---TTEEEECCSSCSSCSEEE-ECTTCC------EEEEEECSSCEEEEESSSC---EEEEEET----T
T ss_pred EECCEEEEEcCC---CCEEEEEECCCCcEEeEE-CCCCcc------eeEEEEeCCEEEEEEccCC---EEEEEEC----C
Confidence 346777766544 2359999999876543 5 665432 2346777899998865433 4556653 2
Q ss_pred CeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcE-EEEEE
Q 046902 288 SWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSL-RTVKI 343 (393)
Q Consensus 288 ~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~-~~v~~ 343 (393)
.-+.+.+|+... ...++..+|+.+++...+.++..+|++|.+. +.|.+
T Consensus 125 Tl~~~~ti~~~~--------eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 125 PPQRERTTRYSG--------EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp TTEEEEEEECSS--------CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred cCcEEEEEeCCC--------ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 346777777632 2345556788888887667899999999664 45554
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.75 Score=42.87 Aligned_cols=197 Identities=12% Similarity=0.125 Sum_probs=96.4
Q ss_pred ec-eEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCC
Q 046902 100 NG-LIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTN 178 (393)
Q Consensus 100 ~G-Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~ 178 (393)
++ +|.....+..+.|||..+++...+-... . +.....++.|.|..+.+ ++... ....+.+++.+++
T Consensus 131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~---g--H~~~V~~l~f~p~~~~~-l~s~s-------~D~~v~iwd~~~~ 197 (435)
T 4e54_B 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI---G--AGGSITGLKFNPLNTNQ-FYASS-------MEGTTRLQDFKGN 197 (435)
T ss_dssp CTTCEEEEETTSCEEEECSSCCSCCEEECCC---S--SSCCCCEEEECSSCTTE-EEEEC-------SSSCEEEEETTSC
T ss_pred CCCEEEEEeCCCEEEEEECCCCCceeEEEcc---C--CCCCEEEEEEeCCCCCE-EEEEe-------CCCEEEEeeccCC
Confidence 44 5555556778999999988654332221 1 11223456666654443 33221 2235788888776
Q ss_pred CeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEE
Q 046902 179 SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVG 258 (393)
Q Consensus 179 ~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~ 258 (393)
.-+....... .......-...-+|.+...+.. ...|..+|+..+....+..-. ... ..+.
T Consensus 198 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~g~~---dg~i~~wd~~~~~~~~~~~h~------~~v-~~v~ 257 (435)
T 4e54_B 198 ILRVFASSDT----------INIWFCSLDVSASSRMVVTGDN---VGNVILLNMDGKELWNLRMHK------KKV-THVA 257 (435)
T ss_dssp EEEEEECCSS----------CSCCCCCEEEETTTTEEEEECS---SSBEEEEESSSCBCCCSBCCS------SCE-EEEE
T ss_pred ceeEEeccCC----------CCccEEEEEECCCCCEEEEEeC---CCcEeeeccCcceeEEEeccc------ceE-Eeee
Confidence 5544322110 0000011112234554444332 356888998765433332111 111 1233
Q ss_pred Ee-CCe-EEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCC
Q 046902 259 SL-EGC-LCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETN 336 (393)
Q Consensus 259 ~~-~G~-L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~ 336 (393)
-. +|. +.+.+.. +..+.||-+......... . ..........-+++.++|..|+....++.+..||+.+.
T Consensus 258 ~~p~~~~~~~s~s~-d~~v~iwd~~~~~~~~~~------~--~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 258 LNPCCDWFLATASV-DQTVKIWDLRQVRGKASF------L--YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp ECTTCSSEEEEEET-TSBCCEEETTTCCSSSCC------S--BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred ecCCCceEEEEecC-cceeeEEecccccccceE------E--EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 22 444 4444444 348999977642211110 0 00000011233455678887777777777999999886
Q ss_pred cE
Q 046902 337 SL 338 (393)
Q Consensus 337 ~~ 338 (393)
+.
T Consensus 329 ~~ 330 (435)
T 4e54_B 329 DC 330 (435)
T ss_dssp SS
T ss_pred cc
Confidence 53
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=93.37 E-value=4 Score=36.19 Aligned_cols=171 Identities=14% Similarity=0.107 Sum_probs=89.6
Q ss_pred EEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeC-CCCeEEccccCcccccccccccccccccCceeEeCce-EEEe
Q 046902 140 FYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLK-TNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGA-LHWV 217 (393)
Q Consensus 140 ~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~-t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~-lyw~ 217 (393)
..++.++|..+ ++.... ....+.+|+.. ++........... . ......-.+.-+|. +|..
T Consensus 143 ~~~~~~spdg~---l~v~~~------~~~~v~~~~~~~~g~~~~~~~~~~~--------~-g~~p~~~~~spdg~~l~v~ 204 (347)
T 3hfq_A 143 IHYTDLTPDNR---LAVIDL------GSDKVYVYNVSDAGQLSEQSVLTME--------A-GFGPRHLVFSPDGQYAFLA 204 (347)
T ss_dssp EEEEEECTTSC---EEEEET------TTTEEEEEEECTTSCEEEEEEEECC--------T-TCCEEEEEECTTSSEEEEE
T ss_pred ceEEEECCCCc---EEEEeC------CCCEEEEEEECCCCcEEEeeeEEcC--------C-CCCCceEEECCCCCEEEEE
Confidence 45577787655 333221 23478899988 6666544321100 0 00001112234676 5544
Q ss_pred ccCCCCCcEEEEEECC--Cceeeee----cCCCcccccCCceeEEEEE-eCCe-EEEEEEcCCCeEEEEEEeecCCCCCe
Q 046902 218 SPKSSTRSVIVAFDLV--AEEFYQL----PLPDSVNVSYANVHVDVGS-LEGC-LCVFRFYNLVYVDMWMMKEHAVKESW 289 (393)
Q Consensus 218 ~~~~~~~~~il~fD~~--~e~~~~i----~lP~~~~~~~~~~~~~l~~-~~G~-L~~~~~~~~~~~~iW~l~~~~~~~~W 289 (393)
... ...|..||+. +.++..+ ..|.... .......++. -+|+ |++.... ...+.+|.++.. ..+
T Consensus 205 ~~~---~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~i~~spdG~~l~v~~~~-~~~v~v~~~~~~---g~~ 275 (347)
T 3hfq_A 205 GEL---SSQIASLKYDTQTGAFTQLGIVKTIPADYT--AHNGAAAIRLSHDGHFLYVSNRG-YNTLAVFAVTAD---GHL 275 (347)
T ss_dssp ETT---TTEEEEEEEETTTTEEEEEEEEESSCTTCC--SCCEEEEEEECTTSCEEEEEEET-TTEEEEEEECGG---GCE
T ss_pred eCC---CCEEEEEEecCCCCceEEeeeeeecCCCCC--CCCcceeEEECCCCCEEEEEeCC-CCEEEEEEECCC---CcE
Confidence 322 2355555554 4565432 2343221 0111123333 3676 5555443 448999999852 356
Q ss_pred EEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC-cEEEEE--ECCCCcEEEEE
Q 046902 290 TKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR-EKLVWF--DLETNSLRTVK 342 (393)
Q Consensus 290 ~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-~~l~~y--d~~t~~~~~v~ 342 (393)
..+..+.... ....-+++.++|..|++...+ ..+..| |.++++++.+.
T Consensus 276 ~~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~ 326 (347)
T 3hfq_A 276 TLIQQISTEG-----DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQ 326 (347)
T ss_dssp EEEEEEECSS-----SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred EEeEEEecCC-----CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEecc
Confidence 6666666421 123457788899888887643 456666 88899988774
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=3.6 Score=35.28 Aligned_cols=192 Identities=10% Similarity=0.048 Sum_probs=97.6
Q ss_pred EeeeeeceEEEee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEE
Q 046902 95 VLGSCNGLIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVY 173 (393)
Q Consensus 95 ~~~s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vy 173 (393)
+....+|.|.+.. ....++++|| +++...+..+. ......++.+|+.. ++..... ....+.+|
T Consensus 104 i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~------~~~~~~~i~~~~~g---~l~v~~~------~~~~i~~~ 167 (299)
T 2z2n_A 104 ITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPN------KGSYPSFITLGSDN---ALWFTEN------QNNAIGRI 167 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS------TTCCEEEEEECTTS---CEEEEET------TTTEEEEE
T ss_pred eEECCCCCEEEEecCCceEEEECC-CCCEEEecCCC------CCCCCceEEEcCCC---CEEEEeC------CCCEEEEE
Confidence 3334467776654 3467999999 77766544322 01223566677653 2222221 23467778
Q ss_pred EeCCCCeEEccccCcccccccccccccccccCceeEe--CceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCC
Q 046902 174 SLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA--GGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYA 251 (393)
Q Consensus 174 ss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~ 251 (393)
+. ++...... .+. .. ....++.+ +|.+|+.... ...|..||. +.++..+.+|.... .
T Consensus 168 ~~-~g~~~~~~-~~~----------~~--~~~~~i~~~~~g~l~v~~~~---~~~i~~~~~-~g~~~~~~~~~~~~---~ 226 (299)
T 2z2n_A 168 TE-SGDITEFK-IPT----------PA--SGPVGITKGNDDALWFVEII---GNKIGRITT-SGEITEFKIPTPNA---R 226 (299)
T ss_dssp CT-TCCEEEEE-CSS----------TT--CCEEEEEECTTSSEEEEETT---TTEEEEECT-TCCEEEEECSSTTC---C
T ss_pred cC-CCcEEEee-CCC----------CC--CcceeEEECCCCCEEEEccC---CceEEEECC-CCcEEEEECCCCCC---C
Confidence 87 77666542 110 00 11123333 5787665432 357999999 77777766663221 1
Q ss_pred ceeEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEE
Q 046902 252 NVHVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVW 330 (393)
Q Consensus 252 ~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ 330 (393)
...+... +|.|++...... .+.+|-. . .. ...+.... ......-+.+ ++| .|++......+..
T Consensus 227 --~~~i~~~~~g~l~v~~~~~~-~i~~~d~--~---g~---~~~~~~~~---~~~~~~~i~~-~~g-~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 227 --PHAITAGAGIDLWFTEWGAN-KIGRLTS--N---NI---IEEYPIQI---KSAEPHGICF-DGE-TIWFAMECDKIGK 290 (299)
T ss_dssp --EEEEEECSTTCEEEEETTTT-EEEEEET--T---TE---EEEEECSS---SSCCEEEEEE-CSS-CEEEEETTTEEEE
T ss_pred --ceeEEECCCCCEEEeccCCc-eEEEECC--C---Cc---eEEEeCCC---CCCccceEEe-cCC-CEEEEecCCcEEE
Confidence 1244443 788877764333 5554432 1 11 12222211 0112334455 555 5777765567999
Q ss_pred EECCCCcEE
Q 046902 331 FDLETNSLR 339 (393)
Q Consensus 331 yd~~t~~~~ 339 (393)
||+++++++
T Consensus 291 ~~~~~~~~~ 299 (299)
T 2z2n_A 291 LTLIKDNME 299 (299)
T ss_dssp EEEC-----
T ss_pred EEcCcccCC
Confidence 999998753
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=4.2 Score=35.91 Aligned_cols=204 Identities=9% Similarity=0.033 Sum_probs=103.0
Q ss_pred eeeceEEEee-CCceEEEEecccccee-ccCCCCCCC-CCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEE
Q 046902 98 SCNGLIALCN-SVQELALFNPSTRKLK-TLPLPPCLV-GFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYS 174 (393)
Q Consensus 98 s~~GLl~~~~-~~~~~~V~NP~T~~~~-~LP~~~~~~-~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vys 174 (393)
..++.+++.. ....+.++|+.|++.. .++...... .........++.+++..+. ++.... . ....+.+|+
T Consensus 98 ~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~-~----~~~~i~~~d 170 (353)
T 3vgz_A 98 NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT--VYISGI-G----KESVIWVVD 170 (353)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE--EEEEEE-S----SSCEEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCE--EEEEec-C----CCceEEEEc
Confidence 3344454444 3568999999998753 343321000 0011123456778876542 222221 0 234688888
Q ss_pred eCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCce
Q 046902 175 LKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANV 253 (393)
Q Consensus 175 s~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~ 253 (393)
..++.=... ++. .......-.+.-+|...+.+.. ...|..+|+.+.+... +..+.... ...
T Consensus 171 ~~~~~~~~~--~~~----------~~~~~~~~~~s~dg~~l~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~---~~~ 232 (353)
T 3vgz_A 171 GGNIKLKTA--IQN----------TGKMSTGLALDSEGKRLYTTNA---DGELITIDTADNKILSRKKLLDDGK---EHF 232 (353)
T ss_dssp TTTTEEEEE--ECC----------CCTTCCCCEEETTTTEEEEECT---TSEEEEEETTTTEEEEEEECCCSSS---CCC
T ss_pred CCCCceEEE--ecC----------CCCccceEEECCCCCEEEEEcC---CCeEEEEECCCCeEEEEEEcCCCCC---Ccc
Confidence 877642211 110 0000111123335554344332 3578899998876543 44432211 111
Q ss_pred eEEEEEe-CCe-EEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-cCcEEEE
Q 046902 254 HVDVGSL-EGC-LCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-RREKLVW 330 (393)
Q Consensus 254 ~~~l~~~-~G~-L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~~~~l~~ 330 (393)
...+... +|+ |++.. .....+.+|-++. .+.+..+.... ..-+.+.++|+.+++.. .+..+..
T Consensus 233 ~~~~~~s~dg~~l~~~~-~~~~~v~~~d~~~------~~~~~~~~~~~-------~~~~~~s~dg~~l~v~~~~~~~v~~ 298 (353)
T 3vgz_A 233 FINISLDTARQRAFITD-SKAAEVLVVDTRN------GNILAKVAAPE-------SLAVLFNPARNEAYVTHRQAGKVSV 298 (353)
T ss_dssp EEEEEEETTTTEEEEEE-SSSSEEEEEETTT------CCEEEEEECSS-------CCCEEEETTTTEEEEEETTTTEEEE
T ss_pred cceEEECCCCCEEEEEe-CCCCEEEEEECCC------CcEEEEEEcCC-------CceEEECCCCCEEEEEECCCCeEEE
Confidence 1123333 454 55554 3334777775542 22334444322 12367788888788776 3567999
Q ss_pred EECCCCcEEE
Q 046902 331 FDLETNSLRT 340 (393)
Q Consensus 331 yd~~t~~~~~ 340 (393)
||+++++...
T Consensus 299 ~d~~~~~~~~ 308 (353)
T 3vgz_A 299 IDAKSYKVVK 308 (353)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCeEEE
Confidence 9999987654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=93.04 E-value=2.8 Score=36.66 Aligned_cols=98 Identities=13% Similarity=0.063 Sum_probs=55.9
Q ss_pred EEEEEECCCceeeeecCCCcccccCCceeEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCc
Q 046902 226 VIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSF 304 (393)
Q Consensus 226 ~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 304 (393)
.|..+|+.+.+...+.++.... . ...+... +|+..++. ...+.+|-++. ...+..+....
T Consensus 220 ~v~~~d~~~~~~~~~~~~~~~~---~--~~~~~~s~dg~~l~~~---~~~v~~~d~~~------~~~~~~~~~~~----- 280 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVRIMDV---F--YFSTAVNPAKTRAFGA---YNVLESFDLEK------NASIKRVPLPH----- 280 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECSS---C--EEEEEECTTSSEEEEE---ESEEEEEETTT------TEEEEEEECSS-----
T ss_pred ceEEEeCCCCCceEeecCCCCC---c--eeeEEECCCCCEEEEe---CCeEEEEECCC------CcCcceecCCC-----
Confidence 5889999987765444322211 1 1122222 55443333 23777776542 23444454321
Q ss_pred ceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEE-EEEE
Q 046902 305 LFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLR-TVKI 343 (393)
Q Consensus 305 ~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~-~v~~ 343 (393)
...-+++.++|+.++....+..+..||+++++.. .+..
T Consensus 281 -~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 281 -SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp -CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred -ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 1334677788888888766678999999987643 3433
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=93.01 E-value=2.3 Score=38.44 Aligned_cols=198 Identities=12% Similarity=0.011 Sum_probs=89.5
Q ss_pred eeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 98 SCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 98 s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
+.+|.++....+..+.|||..+++........ ...+.....++.+.|..+ + ++... ....+.+|+.++
T Consensus 103 s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~---~~~h~~~V~~v~~spdg~-~-l~sgs-------~dg~v~iwd~~~ 170 (357)
T 4g56_B 103 VSEKGILVASDSGAVELWEILEKESLLVNKFA---KYEHDDIVKTLSVFSDGT-Q-AVSGG-------KDFSVKVWDLSQ 170 (357)
T ss_dssp ETTTEEEEEETTSCEEEC--------CCCCEE---ECCCSSCEEEEEECSSSS-E-EEEEE-------TTSCEEEEETTT
T ss_pred cCCCCEEEEECCCEEEEeeccccceeEEEeec---cCCCCCCEEEEEECCCCC-E-EEEEe-------CCCeEEEEECCC
Confidence 34555555556678999999998755433322 011122344566666432 2 23222 234578888887
Q ss_pred CCeEEccccCcccccccccccccccccCceeEe--Cce-EEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCce
Q 046902 178 NSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA--GGA-LHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANV 253 (393)
Q Consensus 178 ~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~-lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~ 253 (393)
+.-... +. .+. ..-.++.+ +|. +...+.. ...|..+|+.+.+... +...... ..
T Consensus 171 ~~~~~~--~~----------~h~--~~v~~v~~s~~~~~~~~s~~~---dg~v~~wd~~~~~~~~~~~~~~~~-----~~ 228 (357)
T 4g56_B 171 KAVLKS--YN----------AHS--SEVNCVAACPGKDTIFLSCGE---DGRILLWDTRKPKPATRIDFCASD-----TI 228 (357)
T ss_dssp TEEEEE--EC----------CCS--SCEEEEEECTTCSSCEEEEET---TSCEEECCTTSSSCBCBCCCTTCC-----SC
T ss_pred CcEEEE--Ec----------CCC--CCEEEEEEccCCCceeeeecc---CCceEEEECCCCceeeeeeecccc-----cc
Confidence 643221 11 000 01111211 222 2222221 2467888887654332 2221111 11
Q ss_pred eEEEEEe--CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEE-EEcCcEEEE
Q 046902 254 HVDVGSL--EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLL-EVRREKLVW 330 (393)
Q Consensus 254 ~~~l~~~--~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l-~~~~~~l~~ 330 (393)
...+.-. ++.+.++...+ ..+.||-+.... .+..+.... ....-+++.++|..++. ...+..+..
T Consensus 229 v~~v~~sp~~~~~la~g~~d-~~i~~wd~~~~~------~~~~~~~~~-----~~v~~l~~sp~~~~~lasgs~D~~i~i 296 (357)
T 4g56_B 229 PTSVTWHPEKDDTFACGDET-GNVSLVNIKNPD------SAQTSAVHS-----QNITGLAYSYHSSPFLASISEDCTVAV 296 (357)
T ss_dssp EEEEEECTTSTTEEEEEESS-SCEEEEESSCGG------GCEEECCCS-----SCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred ccchhhhhcccceEEEeecc-cceeEEECCCCc------EeEEEeccc-----eeEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 1123322 45565555443 389999876421 112222111 12345667777655444 455567999
Q ss_pred EECCCCcEEEE
Q 046902 331 FDLETNSLRTV 341 (393)
Q Consensus 331 yd~~t~~~~~v 341 (393)
||+++++....
T Consensus 297 wd~~~~~~~~~ 307 (357)
T 4g56_B 297 LDADFSEVFRD 307 (357)
T ss_dssp ECTTSCEEEEE
T ss_pred EECCCCcEeEE
Confidence 99999876543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=4.3 Score=35.18 Aligned_cols=111 Identities=13% Similarity=0.055 Sum_probs=71.4
Q ss_pred ceEEEeccCCCCCcEEEEEECCCceee-eecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeE
Q 046902 212 GALHWVSPKSSTRSVIVAFDLVAEEFY-QLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWT 290 (393)
Q Consensus 212 G~lyw~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~ 290 (393)
|.+|..... .....|..+|+.+.+-. .+++|.... ...++..+++|++....+. . +++.+- ..-+
T Consensus 32 g~Lyvstg~-~~~s~v~~iD~~tg~v~~~i~l~~~~f------geGi~~~g~~lyv~t~~~~-~--v~viD~----~t~~ 97 (266)
T 2iwa_A 32 DTLFESTGL-YGRSSVRQVALQTGKVENIHKMDDSYF------GEGLTLLNEKLYQVVWLKN-I--GFIYDR----RTLS 97 (266)
T ss_dssp TEEEEEECS-TTTCEEEEEETTTCCEEEEEECCTTCC------EEEEEEETTEEEEEETTCS-E--EEEEET----TTTE
T ss_pred CeEEEECCC-CCCCEEEEEECCCCCEEEEEecCCCcc------eEEEEEeCCEEEEEEecCC-E--EEEEEC----CCCc
Confidence 677765432 23468999999987654 467765432 2245556888888875433 3 455553 2356
Q ss_pred EEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCc-EEEEEE
Q 046902 291 KLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNS-LRTVKI 343 (393)
Q Consensus 291 ~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~-~~~v~~ 343 (393)
.+.+|+.. . ....++..+|+.+|+...+..+..+|++|.+ ...|.+
T Consensus 98 v~~~i~~g--~-----~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V 144 (266)
T 2iwa_A 98 NIKNFTHQ--M-----KDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNV 144 (266)
T ss_dssp EEEEEECC--S-----SSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred EEEEEECC--C-----CCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEE
Confidence 77777753 1 1235566788888887766789999999966 445544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.82 E-value=8.8 Score=38.57 Aligned_cols=191 Identities=10% Similarity=0.030 Sum_probs=98.1
Q ss_pred eec-eEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 99 CNG-LIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 99 ~~G-Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
.+| +|.....+..+.|||..+++....-... ......+.+.|... .++... ....+.+|+..+
T Consensus 65 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~--~l~~~~-------~dg~i~vw~~~~ 128 (814)
T 3mkq_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH-------PDYIRSIAVHPTKP--YVLSGS-------DDLTVKLWNWEN 128 (814)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEEEEECC-------SSCEEEEEECSSSS--EEEEEE-------TTSEEEEEEGGG
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEecC-------CCCEEEEEEeCCCC--EEEEEc-------CCCEEEEEECCC
Confidence 344 4555556778999999988754322111 12234556665433 233222 245688998876
Q ss_pred CCeEEccccCcccccccccccccccccCceeEe---CceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCce
Q 046902 178 NSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA---GGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANV 253 (393)
Q Consensus 178 ~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~ 253 (393)
+ |.....+. .+. ..-.++.. +|.....+.. ...|..+|+.+..... +..+... ..
T Consensus 129 ~-~~~~~~~~----------~~~--~~v~~~~~~p~~~~~l~~~~~---dg~v~vwd~~~~~~~~~~~~~~~~-----~v 187 (814)
T 3mkq_A 129 N-WALEQTFE----------GHE--HFVMCVAFNPKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQER-----GV 187 (814)
T ss_dssp T-SEEEEEEE----------CCS--SCEEEEEEETTEEEEEEEEET---TSEEEEEETTCSSCSEEEECCCTT-----CC
T ss_pred C-ceEEEEEc----------CCC--CcEEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCcceeEEecCCCC-----CE
Confidence 5 22211111 000 01112222 3444444332 3578899987654322 2222111 01
Q ss_pred eEEEEEe---CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEE
Q 046902 254 HVDVGSL---EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVW 330 (393)
Q Consensus 254 ~~~l~~~---~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ 330 (393)
. .+.-. +|.+.++...+. .+.+|-++. ......+.... ....-+.+.++|..++....++.+..
T Consensus 188 ~-~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~------~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~v~v 254 (814)
T 3mkq_A 188 N-YVDYYPLPDKPYMITASDDL-TIKIWDYQT------KSCVATLEGHM-----SNVSFAVFHPTLPIIISGSEDGTLKI 254 (814)
T ss_dssp C-EEEECCSTTCCEEEEECTTS-EEEEEETTT------TEEEEEEECCS-----SCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred E-EEEEEECCCCCEEEEEeCCC-EEEEEECCC------CcEEEEEcCCC-----CCEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 1 22222 566655555444 899997653 22334443211 12445677788887777776677999
Q ss_pred EECCCCcEE
Q 046902 331 FDLETNSLR 339 (393)
Q Consensus 331 yd~~t~~~~ 339 (393)
||+.+.+..
T Consensus 255 wd~~~~~~~ 263 (814)
T 3mkq_A 255 WNSSTYKVE 263 (814)
T ss_dssp EETTTCSEE
T ss_pred EECCCCcEE
Confidence 999986644
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.79 E-value=5.1 Score=35.74 Aligned_cols=185 Identities=12% Similarity=0.164 Sum_probs=92.8
Q ss_pred eeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccc
Q 046902 106 CNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISN 185 (393)
Q Consensus 106 ~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~ 185 (393)
...+..+.|||..++++....... . .+......+.+.|.. .+ ++... ....+.+|+..++.++.+..
T Consensus 34 ~~~D~~i~iw~~~~~~~~~~~~~~--~--~h~~~v~~~~~sp~g-~~-l~s~s-------~D~~v~iw~~~~~~~~~~~~ 100 (345)
T 3fm0_A 34 CGGDRRIRIWGTEGDSWICKSVLS--E--GHQRTVRKVAWSPCG-NY-LASAS-------FDATTCIWKKNQDDFECVTT 100 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEEC--S--SCSSCEEEEEECTTS-SE-EEEEE-------TTSCEEEEEECCC-EEEEEE
T ss_pred EcCCCeEEEEEcCCCcceeeeeec--c--ccCCcEEEEEECCCC-CE-EEEEE-------CCCcEEEEEccCCCeEEEEE
Confidence 335667889998887654221111 0 112234456676643 22 32222 23457788888877655433
Q ss_pred cCcccccccccccccccccCceeE--eCceEEEeccCCCCCcEEEEEECCCce-eeeec-CCCcccccCCceeEEEEE-e
Q 046902 186 LPRFLRDFYDYLYHSLFRKGYGVL--AGGALHWVSPKSSTRSVIVAFDLVAEE-FYQLP-LPDSVNVSYANVHVDVGS-L 260 (393)
Q Consensus 186 ~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~il~fD~~~e~-~~~i~-lP~~~~~~~~~~~~~l~~-~ 260 (393)
+. .+. ..-.++. -+|.+...+.. ...|..+|+.++. ...+. +.... ... ..+.- -
T Consensus 101 ~~----------~h~--~~v~~v~~sp~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~h~----~~v-~~~~~~p 160 (345)
T 3fm0_A 101 LE----------GHE--NEVKSVAWAPSGNLLATCSR---DKSVWVWEVDEEDEYECVSVLNSHT----QDV-KHVVWHP 160 (345)
T ss_dssp EC----------CCS--SCEEEEEECTTSSEEEEEET---TSCEEEEEECTTSCEEEEEEECCCC----SCE-EEEEECS
T ss_pred cc----------CCC--CCceEEEEeCCCCEEEEEEC---CCeEEEEECCCCCCeEEEEEecCcC----CCe-EEEEECC
Confidence 22 100 0011121 13444333332 2468888876542 22221 11111 111 12222 2
Q ss_pred CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEEC
Q 046902 261 EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDL 333 (393)
Q Consensus 261 ~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~ 333 (393)
+|.+.+....+. .+.||.++. ..|....++.-.. ....-+.+.++|..|+....++.+..||.
T Consensus 161 ~~~~l~s~s~d~-~i~~w~~~~----~~~~~~~~~~~h~-----~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 161 SQELLASASYDD-TVKLYREEE----DDWVCCATLEGHE-----STVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp SSSCEEEEETTS-CEEEEEEET----TEEEEEEEECCCS-----SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEeCCC-cEEEEEecC----CCEEEEEEecCCC-----CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 566655555444 899998874 4576666554321 12445677788887777766667888875
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=92.49 E-value=6.5 Score=36.26 Aligned_cols=187 Identities=13% Similarity=0.114 Sum_probs=99.9
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..+.++|..++..+.|.... .....+.+.|..+ +++.... +.....+.+++..++..+.+...+.
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~--------~~v~~~~~Spdg~--~la~~s~----~~~~~~i~~~d~~tg~~~~l~~~~~- 223 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP--------QPLMSPAWSPDGS--KLAYVTF----ESGRSALVIQTLANGAVRQVASFPR- 223 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES--------SCEEEEEECTTSS--EEEEEEC----TTSSCEEEEEETTTCCEEEEECCSS-
T ss_pred ceEEEEcCCCCCCEEEeCCC--------CcceeeEEcCCCC--EEEEEEe----cCCCcEEEEEECCCCcEEEeecCCC-
Confidence 68999998876655554322 1234556666543 3333221 1123578999999988766543220
Q ss_pred cccccccccccccccCceeEeCce-EEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEE-eCCeEEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGS-LEGCLCVF 267 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~-~~G~L~~~ 267 (393)
. .......-+|. +.+.... .....|..+|+.+.+...+...... ...+.- -+|+..++
T Consensus 224 ---------~---~~~~~~spdg~~la~~~~~-~g~~~i~~~d~~~~~~~~l~~~~~~-------~~~~~~spdg~~l~~ 283 (415)
T 2hqs_A 224 ---------H---NGAPAFSPDGSKLAFALSK-TGSLNLYVMDLASGQIRQVTDGRSN-------NTEPTWFPDSQNLAF 283 (415)
T ss_dssp ---------C---EEEEEECTTSSEEEEEECT-TSSCEEEEEETTTCCEEECCCCSSC-------EEEEEECTTSSEEEE
T ss_pred ---------c---ccCEEEcCCCCEEEEEEec-CCCceEEEEECCCCCEEeCcCCCCc-------ccceEECCCCCEEEE
Confidence 0 01111122564 4444332 2235799999988776554321111 112222 26765444
Q ss_pred EEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC---cEEEEEECCCCcEEEE
Q 046902 268 RFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETNSLRTV 341 (393)
Q Consensus 268 ~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---~~l~~yd~~t~~~~~v 341 (393)
.........||.++-.+ .. ...+.... ....-+.+.++|+.|++.... ..++.+|+++++.+.+
T Consensus 284 ~s~~~g~~~i~~~d~~~--~~---~~~l~~~~-----~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l 350 (415)
T 2hqs_A 284 TSDQAGRPQVYKVNING--GA---PQRITWEG-----SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL 350 (415)
T ss_dssp EECTTSSCEEEEEETTS--SC---CEECCCSS-----SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC
T ss_pred EECCCCCcEEEEEECCC--CC---EEEEecCC-----CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe
Confidence 44433356777776432 11 11222111 123345677899888776543 4799999999988655
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=92.40 E-value=4.5 Score=34.23 Aligned_cols=188 Identities=10% Similarity=0.062 Sum_probs=95.3
Q ss_pred eeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 98 SCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 98 s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
..+|-|.+......++++||.++....++... .....++.+|+... ++.... ....+.+|+.++
T Consensus 75 ~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~-------~~~p~~i~~~~~g~---l~v~~~------~~~~i~~~~~~~ 138 (270)
T 1rwi_B 75 DGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-------LNYPEGLAVDTQGA---VYVADR------GNNRVVKLAAGS 138 (270)
T ss_dssp CTTCCEEEEETTTEEEEECTTCSCCEECCCCS-------CSSEEEEEECTTCC---EEEEEG------GGTEEEEECTTC
T ss_pred CCCCCEEEEcCCCEEEEEeCCCceEeeeecCC-------cCCCcceEECCCCC---EEEEEC------CCCEEEEEECCC
Confidence 34566665554668999999888766554322 12235677777432 332221 233566776555
Q ss_pred CCeEEccccCcccccccccccccccccCceeE--eCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeE
Q 046902 178 NSWRRISNLPRFLRDFYDYLYHSLFRKGYGVL--AGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHV 255 (393)
Q Consensus 178 ~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~ 255 (393)
.......... . ....++. -+|.+|+.... ...|..||..+............ . ..
T Consensus 139 ~~~~~~~~~~------------~--~~p~~i~~~~~g~l~v~~~~---~~~i~~~~~~~~~~~~~~~~~~~----~--p~ 195 (270)
T 1rwi_B 139 KTQTVLPFTG------------L--NDPDGVAVDNSGNVYVTDTD---NNRVVKLEAESNNQVVLPFTDIT----A--PW 195 (270)
T ss_dssp CSCEECCCCS------------C--CSCCCEEECTTCCEEEEEGG---GTEEEEECTTTCCEEECCCSSCC----S--EE
T ss_pred ceeEeecccc------------C--CCceeEEEeCCCCEEEEECC---CCEEEEEecCCCceEeecccCCC----C--ce
Confidence 4433221100 0 1122333 35887776432 35799999987665443221111 1 12
Q ss_pred EEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-cCcEEEEEEC
Q 046902 256 DVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-RREKLVWFDL 333 (393)
Q Consensus 256 ~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~~~~l~~yd~ 333 (393)
.++.. +|.|++...... .+.+|..+ + ..... +.... .....-+++.++|. |++.. .+..+..|++
T Consensus 196 ~i~~d~~g~l~v~~~~~~-~v~~~~~~--~-~~~~~----~~~~~----~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 196 GIAVDEAGTVYVTEHNTN-QVVKLLAG--S-TTSTV----LPFTG----LNTPLAVAVDSDRT-VYVADRGNDRVVKLTS 262 (270)
T ss_dssp EEEECTTCCEEEEETTTS-CEEEECTT--C-SCCEE----CCCCS----CSCEEEEEECTTCC-EEEEEGGGTEEEEECC
T ss_pred EEEECCCCCEEEEECCCC-cEEEEcCC--C-Cccee----eccCC----CCCceeEEECCCCC-EEEEECCCCEEEEEcC
Confidence 34443 678877765433 55554332 1 11111 11111 11233455566776 55554 4457888988
Q ss_pred CCCc
Q 046902 334 ETNS 337 (393)
Q Consensus 334 ~t~~ 337 (393)
..++
T Consensus 263 ~~~~ 266 (270)
T 1rwi_B 263 LEHH 266 (270)
T ss_dssp CGGG
T ss_pred CCcc
Confidence 7654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=92.15 E-value=7.2 Score=35.97 Aligned_cols=188 Identities=11% Similarity=0.033 Sum_probs=96.8
Q ss_pred EeeeeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEE
Q 046902 95 VLGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYS 174 (393)
Q Consensus 95 ~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vys 174 (393)
.++..+.+|+....+..+.|||..+++...--... .....++.+++ + .++... ....+.+|+
T Consensus 178 ~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-------~~~v~~l~~~~---~-~l~s~s-------~dg~i~vwd 239 (435)
T 1p22_A 178 CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHH-------CEAVLHLRFNN---G-MMVTCS-------KDRSIAVWD 239 (435)
T ss_dssp EEECCSSEEEEEETTSCEEEEESSSCCEEEEECCC-------CSCEEEEECCT---T-EEEEEE-------TTSCEEEEE
T ss_pred EEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCC-------CCcEEEEEEcC---C-EEEEee-------CCCcEEEEe
Confidence 33444445555556778999999988754322111 12234455543 2 333322 234688898
Q ss_pred eCCCCeEEc-cccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCc
Q 046902 175 LKTNSWRRI-SNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYAN 252 (393)
Q Consensus 175 s~t~~W~~~-~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~ 252 (393)
..++.-... .... .+ .....++..+|.....+.. ...|..+|+.+.+... +.....
T Consensus 240 ~~~~~~~~~~~~~~----------~~--~~~v~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~------- 297 (435)
T 1p22_A 240 MASPTDITLRRVLV----------GH--RAAVNVVDFDDKYIVSASG---DRTIKVWNTSTCEFVRTLNGHKR------- 297 (435)
T ss_dssp CSSSSCCEEEEEEC----------CC--SSCEEEEEEETTEEEEEET---TSEEEEEETTTCCEEEEEECCSS-------
T ss_pred CCCCCCceeeeEec----------CC--CCcEEEEEeCCCEEEEEeC---CCeEEEEECCcCcEEEEEcCCCC-------
Confidence 877542111 0011 00 0111234445655444433 3579999998765433 221111
Q ss_pred eeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEE
Q 046902 253 VHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFD 332 (393)
Q Consensus 253 ~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd 332 (393)
.......+|.+.+++..+. .+.||-+.. ...+.++.... ..+.++.-+++.++....++.+..||
T Consensus 298 -~v~~~~~~~~~l~~g~~dg-~i~iwd~~~------~~~~~~~~~h~-------~~v~~~~~~~~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 298 -GIACLQYRDRLVVSGSSDN-TIRLWDIEC------GACLRVLEGHE-------ELVRCIRFDNKRIVSGAYDGKIKVWD 362 (435)
T ss_dssp -CEEEEEEETTEEEEEETTS-CEEEEETTT------CCEEEEECCCS-------SCEEEEECCSSEEEEEETTSCEEEEE
T ss_pred -cEEEEEeCCCEEEEEeCCC-eEEEEECCC------CCEEEEEeCCc-------CcEEEEEecCCEEEEEeCCCcEEEEE
Confidence 1122233566666665544 899998763 12334443211 11223333677777777777899999
Q ss_pred CCCCc
Q 046902 333 LETNS 337 (393)
Q Consensus 333 ~~t~~ 337 (393)
+.+.+
T Consensus 363 ~~~~~ 367 (435)
T 1p22_A 363 LVAAL 367 (435)
T ss_dssp HHHHT
T ss_pred CCCCC
Confidence 87654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=91.95 E-value=5.8 Score=34.51 Aligned_cols=176 Identities=15% Similarity=0.098 Sum_probs=87.8
Q ss_pred eeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccc
Q 046902 106 CNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISN 185 (393)
Q Consensus 106 ~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~ 185 (393)
...+..+.+||..+++....-... ......+.++|.. . .++... ....+.+|+.+++.-...-.
T Consensus 159 ~~~dg~v~~~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~-~-~l~~~~-------~dg~i~~~d~~~~~~~~~~~ 222 (337)
T 1gxr_A 159 CCSDGNIAVWDLHNQTLVRQFQGH-------TDGASCIDISNDG-T-KLWTGG-------LDNTVRSWDLREGRQLQQHD 222 (337)
T ss_dssp EETTSCEEEEETTTTEEEEEECCC-------SSCEEEEEECTTS-S-EEEEEE-------TTSEEEEEETTTTEEEEEEE
T ss_pred EeCCCcEEEEeCCCCceeeeeecc-------cCceEEEEECCCC-C-EEEEEe-------cCCcEEEEECCCCceEeeec
Confidence 334556888888776544321111 1223455666543 2 222222 23468888887764322111
Q ss_pred cCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEe-CCeE
Q 046902 186 LPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSL-EGCL 264 (393)
Q Consensus 186 ~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L 264 (393)
.+ .. ...-...-+|.....+.. ...|..+|+.+.....+..... . -..+.-. +|.+
T Consensus 223 ~~----------~~---v~~~~~s~~~~~l~~~~~---~~~i~~~~~~~~~~~~~~~~~~------~-v~~~~~~~~~~~ 279 (337)
T 1gxr_A 223 FT----------SQ---IFSLGYCPTGEWLAVGME---SSNVEVLHVNKPDKYQLHLHES------C-VLSLKFAYCGKW 279 (337)
T ss_dssp CS----------SC---EEEEEECTTSSEEEEEET---TSCEEEEETTSSCEEEECCCSS------C-EEEEEECTTSSE
T ss_pred CC----------Cc---eEEEEECCCCCEEEEEcC---CCcEEEEECCCCCeEEEcCCcc------c-eeEEEECCCCCE
Confidence 11 00 001011124544444432 3468889998776544332111 1 1123333 6776
Q ss_pred EEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEEC
Q 046902 265 CVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDL 333 (393)
Q Consensus 265 ~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~ 333 (393)
.+....+. .+.+|.++... .+....... ...-+.+.++|..++....++.+..||+
T Consensus 280 l~~~~~dg-~i~~~~~~~~~------~~~~~~~~~------~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 280 FVSTGKDN-LLNAWRTPYGA------SIFQSKESS------SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEETTS-EEEEEETTTCC------EEEEEECSS------CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEecCCC-cEEEEECCCCe------EEEEecCCC------cEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 66555544 89999876421 122222211 2344566778887777777667888875
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.85 E-value=12 Score=37.96 Aligned_cols=178 Identities=15% Similarity=0.064 Sum_probs=97.3
Q ss_pred EEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEe---CceEEEe
Q 046902 141 YGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA---GGALHWV 217 (393)
Q Consensus 141 ~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~---~G~lyw~ 217 (393)
.++++|...+ +|++... ....++++++....-+.+..-. + ....++.+ +|.|||.
T Consensus 474 ~GLAvD~~~~--~LY~tD~------~~~~I~v~~ldG~~~~~l~~~~------------l--~~P~gIaVDp~~g~LYwt 531 (791)
T 3m0c_C 474 DGLAVDWIHS--NIYWTDS------VLGTVSVADTKGVKRKTLFREN------------G--SKPRAIVVDPVHGFMYWT 531 (791)
T ss_dssp CEEEEETTTT--EEEEEET------TTTEEEEEETTSSSEEEEEECT------------T--CCEEEEEEETTTTEEEEE
T ss_pred ceeeeeecCC--cEEEEec------CCCeEEEEeCCCCeEEEEEeCC------------C--CCcceEEEecCCCCEEEe
Confidence 4677787654 3333221 2447888888765544442111 0 12234554 5899998
Q ss_pred ccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEE--eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEe
Q 046902 218 SPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGS--LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSV 295 (393)
Q Consensus 218 ~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~--~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i 295 (393)
-.. ....|..+++....-..+.. .... . ...|+. .+|+||++.... -.||+.+-.| ......+
T Consensus 532 D~g--~~~~I~~~~~dG~~~~~lv~-~~l~---~--P~GLavD~~~~~LYwaD~~~---~~I~~~d~dG-~~~~~v~--- 596 (791)
T 3m0c_C 532 DWG--TPAKIKKGGLNGVDIYSLVT-ENIQ---W--PNGITLDLLSGRLYWVDSKL---HSISSIDVNG-GNRKTIL--- 596 (791)
T ss_dssp ECS--SSCEEEEEETTSCCEEEEEC-SSCS---C--EEEEEEETTTTEEEEEETTT---TEEEEEETTS-CSCEEEE---
T ss_pred cCC--CCCeEEEEecCCCceEEEEe-CCCC---C--ceEEEEecCCCeEEEEeCCC---CcEEEEecCC-CceEEEe---
Confidence 543 22579999997654443321 1111 1 123444 489999987543 2566666444 2222221
Q ss_pred eCCCCCCCcceeeEEEEEeCCcEEEEEEc-CcEEEEEECCCCcEEEEEEecCCCC-eeeeEEEEecccc
Q 046902 296 QEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REKLVWFDLETNSLRTVKIDTHGLD-FVDTEICMASLVP 362 (393)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~l~~yd~~t~~~~~v~~~~~~~~-~~~~~~y~~SL~~ 362 (393)
.... ....|+++...++.||+... ...|..+|..+++-..+-. .+.. -+.+.+|.+..-+
T Consensus 597 ~~~~-----~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~--~~l~~P~~i~v~h~~~Qp 658 (791)
T 3m0c_C 597 EDEK-----RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA--ENLLSPEDMVLFHNLTQP 658 (791)
T ss_dssp ECTT-----TTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEE--CSCSCCCCEEEESGGGSC
T ss_pred cCCC-----ccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEee--cCCCCceeEeeeccccCC
Confidence 1110 12457777666678888753 3579999987775433323 3443 5566777776644
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=91.76 E-value=7.4 Score=35.33 Aligned_cols=205 Identities=14% Similarity=0.052 Sum_probs=102.7
Q ss_pred ec-eEEEeeCCceEEEEeccccceeccC-CCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 100 NG-LIALCNSVQELALFNPSTRKLKTLP-LPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 100 ~G-Ll~~~~~~~~~~V~NP~T~~~~~LP-~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
+| +|+....+..+.|||..+++...-. .+..... .+......+.+.|.... .++... ....+.+|+.++
T Consensus 93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~-~l~s~~-------~dg~i~iwd~~~ 163 (402)
T 2aq5_A 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIVAWHPTAQN-VLLSAG-------CDNVILVWDVGT 163 (402)
T ss_dssp CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSSBTT-EEEEEE-------TTSCEEEEETTT
T ss_pred CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec-CCCCeEEEEEECcCCCC-EEEEEc-------CCCEEEEEECCC
Confidence 44 4444445678999999887532210 0000000 11223445666665433 233222 234588999888
Q ss_pred CCeEEccccCcccccccccccccccccCceeEe--CceEEEeccCCCCCcEEEEEECCCceeee-e-cCCCcccccCCce
Q 046902 178 NSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA--GGALHWVSPKSSTRSVIVAFDLVAEEFYQ-L-PLPDSVNVSYANV 253 (393)
Q Consensus 178 ~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i-~lP~~~~~~~~~~ 253 (393)
+.....-... .+. ..-.++.+ +|.....+.. ...|..+|+.+.+... + ...... ..
T Consensus 164 ~~~~~~~~~~----------~~~--~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~-----~~ 223 (402)
T 2aq5_A 164 GAAVLTLGPD----------VHP--DTIYSVDWSRDGALICTSCR---DKRVRVIEPRKGTVVAEKDRPHEGT-----RP 223 (402)
T ss_dssp TEEEEEECTT----------TCC--SCEEEEEECTTSSCEEEEET---TSEEEEEETTTTEEEEEEECSSCSS-----SC
T ss_pred CCccEEEecC----------CCC--CceEEEEECCCCCEEEEEec---CCcEEEEeCCCCceeeeeccCCCCC-----cc
Confidence 7543221001 000 01112222 4544444332 3579999998766433 2 222111 01
Q ss_pred eEEEEEeCCeEEEEEE--cCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-cCcEEEE
Q 046902 254 HVDVGSLEGCLCVFRF--YNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-RREKLVW 330 (393)
Q Consensus 254 ~~~l~~~~G~L~~~~~--~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~~~~l~~ 330 (393)
......-+|.+.+++. ..+..+.||-+.... .. .....+.... ...-+.+.++|..+++.. .++.+.+
T Consensus 224 ~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~--~~-~~~~~~~~~~------~v~~~~~s~~~~~l~~~g~~dg~i~i 294 (402)
T 2aq5_A 224 VHAVFVSEGKILTTGFSRMSERQVALWDTKHLE--EP-LSLQELDTSS------GVLLPFFDPDTNIVYLCGKGDSSIRY 294 (402)
T ss_dssp CEEEECSTTEEEEEEECTTCCEEEEEEETTBCS--SC-SEEEECCCCS------SCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred eEEEEcCCCcEEEEeccCCCCceEEEEcCcccc--CC-ceEEeccCCC------ceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence 1112223677666663 234489999887522 11 1122222211 234467778888887765 3567999
Q ss_pred EECCCCc--EEEEE
Q 046902 331 FDLETNS--LRTVK 342 (393)
Q Consensus 331 yd~~t~~--~~~v~ 342 (393)
||+.+++ +..+.
T Consensus 295 ~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 295 FEITSEAPFLHYLS 308 (402)
T ss_dssp EEECSSTTCEEEEE
T ss_pred EEecCCCcceEeec
Confidence 9999987 66653
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.68 E-value=7.2 Score=35.02 Aligned_cols=102 Identities=10% Similarity=-0.009 Sum_probs=51.9
Q ss_pred cEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCc
Q 046902 225 SVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSF 304 (393)
Q Consensus 225 ~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 304 (393)
..|..+|+.+.+-........................+...++...+ ..+.+|-+.. ...+..+....
T Consensus 267 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~d~~~------~~~~~~~~~~~----- 334 (408)
T 4a11_B 267 NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG-STIAVYTVYS------GEQITMLKGHY----- 334 (408)
T ss_dssp SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET-TEEEEEETTT------CCEEEEECCCS-----
T ss_pred CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC-CEEEEEECcC------CcceeeeccCC-----
Confidence 56899999876543321111000001111112222222333333333 3888887763 22344443211
Q ss_pred ceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcE
Q 046902 305 LFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSL 338 (393)
Q Consensus 305 ~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~ 338 (393)
....-+++.++|..|+....++.+..||+++.+.
T Consensus 335 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 335 KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 1244577888888787777777899999999764
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=91.38 E-value=7.5 Score=34.64 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=67.6
Q ss_pred eCceEEEeccCCCCCcEEEEEECCCceeeeec----CCCcccccCCceeEEEEEe-CCeEEEEEEcC-CCeEEEEEEeec
Q 046902 210 AGGALHWVSPKSSTRSVIVAFDLVAEEFYQLP----LPDSVNVSYANVHVDVGSL-EGCLCVFRFYN-LVYVDMWMMKEH 283 (393)
Q Consensus 210 ~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~----lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~-~~~~~iW~l~~~ 283 (393)
-+|...+.... ....|..||+.+.++..+. .|.... . ...+... +|+..++.... ...+.||.++..
T Consensus 220 pdg~~l~v~~~--~~~~v~v~~~~~g~~~~~~~~~~~~~~~~----~-~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~ 292 (361)
T 3scy_A 220 SDGKFAYLINE--IGGTVIAFRYADGMLDEIQTVAADTVNAQ----G-SGDIHLSPDGKYLYASNRLKADGVAIFKVDET 292 (361)
T ss_dssp TTSSEEEEEET--TTCEEEEEEEETTEEEEEEEEESCSSCCC----C-EEEEEECTTSSEEEEEECSSSCEEEEEEECTT
T ss_pred CCCCEEEEEcC--CCCeEEEEEecCCceEEeEEEecCCCCCC----C-cccEEECCCCCEEEEECCCCCCEEEEEEEcCC
Confidence 35653333332 2357889998877665432 232211 1 1233333 77654444444 458999999732
Q ss_pred CCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc-CcE--EEEEECCCCcEEEE
Q 046902 284 AVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REK--LVWFDLETNSLRTV 341 (393)
Q Consensus 284 ~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~--l~~yd~~t~~~~~v 341 (393)
...+..+..+.... ...-+++.++|..|+.... +.. ++.+|+++++++.+
T Consensus 293 --~g~~~~~~~~~~g~------~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 293 --NGTLTKVGYQLTGI------HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp --TCCEEEEEEEECSS------CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred --CCcEEEeeEecCCC------CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 24566666666411 2345778889887888763 344 44478889988776
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=91.36 E-value=7.4 Score=34.51 Aligned_cols=197 Identities=15% Similarity=0.181 Sum_probs=97.3
Q ss_pred eEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeE
Q 046902 102 LIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWR 181 (393)
Q Consensus 102 Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~ 181 (393)
+|+....+..+.|||..++++..+-... .+.....++.+.+.. .+ ++... ....+.+|+..++.+.
T Consensus 22 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~-~~-l~~~~-------~dg~i~vwd~~~~~~~ 87 (372)
T 1k8k_C 22 QIAICPNNHEVHIYEKSGNKWVQVHELK-----EHNGQVTGVDWAPDS-NR-IVTCG-------TDRNAYVWTLKGRTWK 87 (372)
T ss_dssp EEEEECSSSEEEEEEEETTEEEEEEEEE-----CCSSCEEEEEEETTT-TE-EEEEE-------TTSCEEEEEEETTEEE
T ss_pred EEEEEeCCCEEEEEeCCCCcEEeeeeec-----CCCCcccEEEEeCCC-CE-EEEEc-------CCCeEEEEECCCCeee
Confidence 3333335678999999888533222211 011234456677643 33 22222 2346889999888776
Q ss_pred EccccCcccccccccccccccccCceeE--eCceEEEeccCCCCCcEEEEEECCCce-e---eeecCCCcccccCCceeE
Q 046902 182 RISNLPRFLRDFYDYLYHSLFRKGYGVL--AGGALHWVSPKSSTRSVIVAFDLVAEE-F---YQLPLPDSVNVSYANVHV 255 (393)
Q Consensus 182 ~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~il~fD~~~e~-~---~~i~lP~~~~~~~~~~~~ 255 (393)
....... +. ..-..+. -+|.....+.. ...|..+|+.+.. + ..+..+.. .. -.
T Consensus 88 ~~~~~~~----------~~--~~v~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~~~-----~~-i~ 146 (372)
T 1k8k_C 88 PTLVILR----------IN--RAARCVRWAPNEKKFAVGSG---SRVISICYFEQENDWWVCKHIKKPIR-----ST-VL 146 (372)
T ss_dssp EEEECCC----------CS--SCEEEEEECTTSSEEEEEET---TSSEEEEEEETTTTEEEEEEECTTCC-----SC-EE
T ss_pred eeEEeec----------CC--CceeEEEECCCCCEEEEEeC---CCEEEEEEecCCCcceeeeeeecccC-----CC-ee
Confidence 5432110 00 0011111 23444444332 2456677766543 2 22222211 11 11
Q ss_pred EEEEe-CCeEEEEEEcCCCeEEEEEEeecCC-----CCCe-------EEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEE
Q 046902 256 DVGSL-EGCLCVFRFYNLVYVDMWMMKEHAV-----KESW-------TKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLE 322 (393)
Q Consensus 256 ~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~-----~~~W-------~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~ 322 (393)
.+... +|.+.++...+. .+.+|-+..... ...| ..+..+... .....-+.+.++|..|+..
T Consensus 147 ~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~ 220 (372)
T 1k8k_C 147 SLDWHPNSVLLAAGSCDF-KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS-----CGWVHGVCFSANGSRVAWV 220 (372)
T ss_dssp EEEECTTSSEEEEEETTS-CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC-----SSCEEEEEECSSSSEEEEE
T ss_pred EEEEcCCCCEEEEEcCCC-CEEEEEcccccccccccccccccccchhhheEecCCC-----CCeEEEEEECCCCCEEEEE
Confidence 33332 666666555444 899998642110 0112 222333211 1123456677788888887
Q ss_pred EcCcEEEEEECCCCcEE
Q 046902 323 VRREKLVWFDLETNSLR 339 (393)
Q Consensus 323 ~~~~~l~~yd~~t~~~~ 339 (393)
..++.+..||+++++..
T Consensus 221 ~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 221 SHDSTVCLADADKKMAV 237 (372)
T ss_dssp ETTTEEEEEEGGGTTEE
T ss_pred eCCCEEEEEECCCCcee
Confidence 77778999999887643
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=91.13 E-value=9.3 Score=35.25 Aligned_cols=188 Identities=12% Similarity=0.067 Sum_probs=100.9
Q ss_pred EeeeeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEE
Q 046902 95 VLGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYS 174 (393)
Q Consensus 95 ~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vys 174 (393)
.++..+.+++....+..+.|||..+++....-... .....++.+++ ++ ++... ....+.+|+
T Consensus 164 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h-------~~~v~~~~~~~---~~-l~s~s-------~dg~i~~wd 225 (445)
T 2ovr_B 164 SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGH-------TSTVRCMHLHE---KR-VVSGS-------RDATLRVWD 225 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC-------SSCEEEEEEET---TE-EEEEE-------TTSEEEEEE
T ss_pred EEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCC-------CCcEEEEEecC---CE-EEEEe-------CCCEEEEEE
Confidence 34444566666666788999999988654321111 11233455553 23 33322 345788999
Q ss_pred eCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCce
Q 046902 175 LKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANV 253 (393)
Q Consensus 175 s~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~ 253 (393)
..++.-... +. . .......+..+|.....+.. ...|..+|+.+.+... +.....
T Consensus 226 ~~~~~~~~~--~~----------~--~~~~v~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~-------- 280 (445)
T 2ovr_B 226 IETGQCLHV--LM----------G--HVAAVRCVQYDGRRVVSGAY---DFMVKVWDPETETCLHTLQGHTN-------- 280 (445)
T ss_dssp SSSCCEEEE--EE----------C--CSSCEEEEEECSSCEEEEET---TSCEEEEEGGGTEEEEEECCCSS--------
T ss_pred CCCCcEEEE--Ec----------C--CcccEEEEEECCCEEEEEcC---CCEEEEEECCCCcEeEEecCCCC--------
Confidence 887643211 11 0 00111234446665555443 3578899988765432 332111
Q ss_pred eEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEEC
Q 046902 254 HVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDL 333 (393)
Q Consensus 254 ~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~ 333 (393)
...-...+|...++...+. .+.+|-+... ..+..+.... ..+.++..+++.++....++.+..||+
T Consensus 281 ~v~~~~~~~~~l~~~~~d~-~i~i~d~~~~------~~~~~~~~~~-------~~v~~~~~~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 281 RVYSLQFDGIHVVSGSLDT-SIRVWDVETG------NCIHTLTGHQ-------SLTSGMELKDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp CEEEEEECSSEEEEEETTS-CEEEEETTTC------CEEEEECCCC-------SCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ceEEEEECCCEEEEEeCCC-eEEEEECCCC------CEEEEEcCCc-------ccEEEEEEeCCEEEEEeCCCeEEEEEC
Confidence 1122223777766665544 8999987641 2333333211 123344446677777777778999999
Q ss_pred CCCcEE
Q 046902 334 ETNSLR 339 (393)
Q Consensus 334 ~t~~~~ 339 (393)
++++..
T Consensus 347 ~~~~~~ 352 (445)
T 2ovr_B 347 KTGQCL 352 (445)
T ss_dssp TTCCEE
T ss_pred CCCcEE
Confidence 887643
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=91.08 E-value=6.3 Score=33.26 Aligned_cols=193 Identities=11% Similarity=0.051 Sum_probs=90.8
Q ss_pred EeeeeeceEEE-ee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEE
Q 046902 95 VLGSCNGLIAL-CN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEV 172 (393)
Q Consensus 95 ~~~s~~GLl~~-~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~V 172 (393)
+....+|-|.+ .+ ....+.++|+-++....++... .. ...++.+|+... ++... ....+.+
T Consensus 29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~--~~-----~p~~i~~~~~g~---l~v~~-------~~~~i~~ 91 (270)
T 1rwi_B 29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG--LY-----QPQGLAVDGAGT---VYVTD-------FNNRVVT 91 (270)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECC-----EECCCCS--CC-----SCCCEEECTTCC---EEEEE-------TTTEEEE
T ss_pred eEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCC--cC-----CcceeEECCCCC---EEEEc-------CCCEEEE
Confidence 33344566655 43 4567889999887766554322 11 123456676432 32222 1236777
Q ss_pred EEeCCCCeEEccccCcccccccccccccccccCceeE--eCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccC
Q 046902 173 YSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVL--AGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSY 250 (393)
Q Consensus 173 yss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~ 250 (393)
|+..++.-..+.... . ....++. -+|.+|+.... ...|..+|..+......... ...
T Consensus 92 ~d~~~~~~~~~~~~~------------~--~~p~~i~~~~~g~l~v~~~~---~~~i~~~~~~~~~~~~~~~~-~~~--- 150 (270)
T 1rwi_B 92 LAAGSNNQTVLPFDG------------L--NYPEGLAVDTQGAVYVADRG---NNRVVKLAAGSKTQTVLPFT-GLN--- 150 (270)
T ss_dssp ECTTCSCCEECCCCS------------C--SSEEEEEECTTCCEEEEEGG---GTEEEEECTTCCSCEECCCC-SCC---
T ss_pred EeCCCceEeeeecCC------------c--CCCcceEECCCCCEEEEECC---CCEEEEEECCCceeEeeccc-cCC---
Confidence 877665444332111 0 1112233 36787776432 35788888766544332211 110
Q ss_pred CceeEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc-CcEE
Q 046902 251 ANVHVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REKL 328 (393)
Q Consensus 251 ~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~l 328 (393)
. ...++.. +|+|++...... .+.+|-.+ + .. ... ..... .....-+++.++| .+++... +..+
T Consensus 151 ~--p~~i~~~~~g~l~v~~~~~~-~i~~~~~~--~-~~---~~~-~~~~~----~~~p~~i~~d~~g-~l~v~~~~~~~v 215 (270)
T 1rwi_B 151 D--PDGVAVDNSGNVYVTDTDNN-RVVKLEAE--S-NN---QVV-LPFTD----ITAPWGIAVDEAG-TVYVTEHNTNQV 215 (270)
T ss_dssp S--CCCEEECTTCCEEEEEGGGT-EEEEECTT--T-CC---EEE-CCCSS----CCSEEEEEECTTC-CEEEEETTTSCE
T ss_pred C--ceeEEEeCCCCEEEEECCCC-EEEEEecC--C-Cc---eEe-ecccC----CCCceEEEECCCC-CEEEEECCCCcE
Confidence 1 1123333 688777765433 55554332 1 11 111 11111 1123345555666 5666653 4569
Q ss_pred EEEECCCCcEEE
Q 046902 329 VWFDLETNSLRT 340 (393)
Q Consensus 329 ~~yd~~t~~~~~ 340 (393)
..||++++....
T Consensus 216 ~~~~~~~~~~~~ 227 (270)
T 1rwi_B 216 VKLLAGSTTSTV 227 (270)
T ss_dssp EEECTTCSCCEE
T ss_pred EEEcCCCCccee
Confidence 999998876544
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=91.05 E-value=8.4 Score=34.63 Aligned_cols=196 Identities=9% Similarity=0.087 Sum_probs=97.4
Q ss_pred EeeeeeceEEEeeCCceEEEEeccccceec-cCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEE
Q 046902 95 VLGSCNGLIALCNSVQELALFNPSTRKLKT-LPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVY 173 (393)
Q Consensus 95 ~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vy 173 (393)
.....+|.|.+......++.+|+.|++.+. .+... ... ....+ + +. +|+... ....+..|
T Consensus 98 ~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~---~~~-~~p~~----~---~~-~v~v~~-------~~g~l~~~ 158 (376)
T 3q7m_A 98 GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG---EAL-SRPVV----S---DG-LVLIHT-------SNGQLQAL 158 (376)
T ss_dssp EEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSS---CCC-SCCEE----E---TT-EEEEEC-------TTSEEEEE
T ss_pred CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC---ceE-cCCEE----E---CC-EEEEEc-------CCCeEEEE
Confidence 345567888887666789999999987442 11111 000 01111 1 11 333221 23467888
Q ss_pred EeCCCC--eEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCce--eee-ecCCCcccc
Q 046902 174 SLKTNS--WRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEE--FYQ-LPLPDSVNV 248 (393)
Q Consensus 174 ss~t~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~--~~~-i~lP~~~~~ 248 (393)
+..++. |+.-...+. ........++..+|.+|.-.. ...|.++|..+.+ |+. ...|.....
T Consensus 159 d~~tG~~~W~~~~~~~~----------~~~~~~~~~~~~~~~v~~g~~----~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 224 (376)
T 3q7m_A 159 NEADGAVKWTVNLDMPS----------LSLRGESAPTTAFGAAVVGGD----NGRVSAVLMEQGQMIWQQRISQATGSTE 224 (376)
T ss_dssp ETTTCCEEEEEECCC---------------CCCCCCEEETTEEEECCT----TTEEEEEETTTCCEEEEEECCC------
T ss_pred ECCCCcEEEEEeCCCCc----------eeecCCCCcEEECCEEEEEcC----CCEEEEEECCCCcEEEEEecccCCCCcc
Confidence 887774 876532220 001112345667888776433 2589999997654 443 222321100
Q ss_pred --cCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCc
Q 046902 249 --SYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRRE 326 (393)
Q Consensus 249 --~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~ 326 (393)
............+|.+++..... .+. .++-...+..|... ... ...| .+ +++.|++...+.
T Consensus 225 ~~~~~~~~~~p~~~~~~v~~~~~~g--~l~--~~d~~tG~~~w~~~----~~~------~~~~-~~--~~~~l~~~~~~g 287 (376)
T 3q7m_A 225 IDRLSDVDTTPVVVNGVVFALAYNG--NLT--ALDLRSGQIMWKRE----LGS------VNDF-IV--DGNRIYLVDQND 287 (376)
T ss_dssp -----CCCCCCEEETTEEEEECTTS--CEE--EEETTTCCEEEEEC----CCC------EEEE-EE--ETTEEEEEETTC
T ss_pred cccccccCCCcEEECCEEEEEecCc--EEE--EEECCCCcEEeecc----CCC------CCCc-eE--ECCEEEEEcCCC
Confidence 00000112234577777665322 332 33321113346532 111 1122 22 356788887766
Q ss_pred EEEEEECCCCcEEE
Q 046902 327 KLVWFDLETNSLRT 340 (393)
Q Consensus 327 ~l~~yd~~t~~~~~ 340 (393)
.++.+|++|++...
T Consensus 288 ~l~~~d~~tG~~~w 301 (376)
T 3q7m_A 288 RVMALTIDGGVTLW 301 (376)
T ss_dssp CEEEEETTTCCEEE
T ss_pred eEEEEECCCCcEEE
Confidence 79999999998654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=90.83 E-value=5.8 Score=34.81 Aligned_cols=56 Identities=7% Similarity=0.245 Sum_probs=34.6
Q ss_pred CCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCC----cEEEEEEcCcEEEEEECCC
Q 046902 272 LVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNG----VKLLLEVRREKLVWFDLET 335 (393)
Q Consensus 272 ~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g----~~i~l~~~~~~l~~yd~~t 335 (393)
+..+.||-++. ...|.....+.-.. ....-+++.+++ ..|+-...++.+..||+++
T Consensus 188 D~~v~lWd~~~---~~~~~~~~~l~~h~-----~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 188 DNLIKLWKEEE---DGQWKEEQKLEAHS-----DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp TSBCCEEEECT---TSCEEEEECCBCCS-----SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred CCeEEEEEeCC---CCccceeeecccCC-----CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 44899998863 24577665443211 123445666654 4566666677899999876
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=90.77 E-value=9.7 Score=34.87 Aligned_cols=199 Identities=12% Similarity=0.075 Sum_probs=95.4
Q ss_pred eeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 98 SCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 98 s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
|.+++|... .+..++|||..|++...+-... .+.....++.|.+.. .|-+ .+. ....+.+|+..+
T Consensus 114 S~~n~lAvg-ld~tV~lWd~~tg~~~~~~~~~-----~~~~~V~sv~fspdg-~~la--sgs------~Dg~v~iWd~~~ 178 (420)
T 4gga_A 114 SSGNVLAVA-LDNSVYLWSASSGDILQLLQME-----QPGEYISSVAWIKEG-NYLA--VGT------SSAEVQLWDVQQ 178 (420)
T ss_dssp CTTSEEEEE-ETTEEEEEETTTCCEEEEEECC-----STTCCEEEEEECTTS-SEEE--EEE------TTSCEEEEETTT
T ss_pred CCCCEEEEE-eCCEEEEEECCCCCEEEEEEec-----CCCCcEEEEEECCCC-CEEE--EEE------CCCeEEEEEcCC
Confidence 456666554 3678999999999876654332 112234456676643 3322 222 234688999887
Q ss_pred CCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEE
Q 046902 178 NSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDV 257 (393)
Q Consensus 178 ~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l 257 (393)
+.-. ..+. .+ .....++..+|.+-..+.. ...+..+|..........+.... .......
T Consensus 179 ~~~~--~~~~----------~h--~~~v~~~s~~~~~l~sgs~---d~~i~~~d~~~~~~~~~~~~~h~----~~~~~~~ 237 (420)
T 4gga_A 179 QKRL--RNMT----------SH--SARVGSLSWNSYILSSGSR---SGHIHHHDVRVAEHHVATLSGHS----QEVCGLR 237 (420)
T ss_dssp TEEE--EEEC----------CC--SSCEEEEEEETTEEEEEET---TSEEEEEETTSSSCEEEEEECCS----SCEEEEE
T ss_pred CcEE--EEEe----------CC--CCceEEEeeCCCEEEEEeC---CCceeEeeecccceeeEEecccc----cceeeee
Confidence 6421 1111 00 0112234455554433332 35677788765443332222111 1111122
Q ss_pred EEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCC-cEEEEEE--cCcEEEEEECC
Q 046902 258 GSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNG-VKLLLEV--RREKLVWFDLE 334 (393)
Q Consensus 258 ~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g-~~i~l~~--~~~~l~~yd~~ 334 (393)
...+|...+....+. .+.||-+.... ..+..+....... .....+++.+++ ..+.... .++.+..||+.
T Consensus 238 ~~~~g~~l~s~~~D~-~v~i~~~~~~~--~~~~~~~~~~~~~-----~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~ 309 (420)
T 4gga_A 238 WAPDGRHLASGGNDN-LVNVWPSAPGE--GGWVPLQTFTQHQ-----GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 309 (420)
T ss_dssp ECTTSSEEEEEETTS-CEEEEESSCCS--SCSCCSEEECCCS-----SCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred ecCCCCeeeeeeccc-cceEEeecccc--ccceeeeeecccC-----CceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence 223666655555444 88899876422 1122212111110 112334444433 3333332 23567888888
Q ss_pred CCcEEE
Q 046902 335 TNSLRT 340 (393)
Q Consensus 335 t~~~~~ 340 (393)
+++...
T Consensus 310 t~~~~~ 315 (420)
T 4gga_A 310 SGACLS 315 (420)
T ss_dssp TTEEEE
T ss_pred ccccce
Confidence 776443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=90.59 E-value=8.7 Score=34.01 Aligned_cols=142 Identities=13% Similarity=0.083 Sum_probs=77.7
Q ss_pred ccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeee-cCCCc
Q 046902 167 DVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQL-PLPDS 245 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i-~lP~~ 245 (393)
...+.+|+..++.|+.+..+.. +......-...-+|.+...+.. ...|..+|+.+.++... .+...
T Consensus 29 d~~v~i~~~~~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~ 95 (372)
T 1k8k_C 29 NHEVHIYEKSGNKWVQVHELKE----------HNGQVTGVDWAPDSNRIVTCGT---DRNAYVWTLKGRTWKPTLVILRI 95 (372)
T ss_dssp SSEEEEEEEETTEEEEEEEEEC----------CSSCEEEEEEETTTTEEEEEET---TSCEEEEEEETTEEEEEEECCCC
T ss_pred CCEEEEEeCCCCcEEeeeeecC----------CCCcccEEEEeCCCCEEEEEcC---CCeEEEEECCCCeeeeeEEeecC
Confidence 4578999999887765543320 0000011111224544444332 24688899988775443 22222
Q ss_pred ccccCCceeEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc
Q 046902 246 VNVSYANVHVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR 324 (393)
Q Consensus 246 ~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~ 324 (393)
. ... ..+.-. +|...++...+. .+.+|.++. ...|.....+.... .....-+.+.+++..++....
T Consensus 96 ~----~~v-~~~~~~~~~~~l~~~~~d~-~v~i~d~~~---~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 96 N----RAA-RCVRWAPNEKKFAVGSGSR-VISICYFEQ---ENDWWVCKHIKKPI----RSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp S----SCE-EEEEECTTSSEEEEEETTS-SEEEEEEET---TTTEEEEEEECTTC----CSCEEEEEECTTSSEEEEEET
T ss_pred C----Cce-eEEEECCCCCEEEEEeCCC-EEEEEEecC---CCcceeeeeeeccc----CCCeeEEEEcCCCCEEEEEcC
Confidence 1 111 123322 566655555444 899999985 23465555443321 112445677778887777776
Q ss_pred CcEEEEEECC
Q 046902 325 REKLVWFDLE 334 (393)
Q Consensus 325 ~~~l~~yd~~ 334 (393)
++.+..||+.
T Consensus 163 dg~i~~~d~~ 172 (372)
T 1k8k_C 163 DFKCRIFSAY 172 (372)
T ss_dssp TSCEEEEECC
T ss_pred CCCEEEEEcc
Confidence 7779999964
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.55 E-value=9.5 Score=34.38 Aligned_cols=194 Identities=7% Similarity=-0.003 Sum_probs=96.5
Q ss_pred eeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 98 SCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 98 s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
+.+|.++....+..+.+|+..+++....-... ......+.+.+... .++... ....+.+|+..+
T Consensus 215 ~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~--~l~~~~-------~d~~i~i~d~~~ 278 (425)
T 1r5m_A 215 VDDDKFVIPGPKGAIFVYQITEKTPTGKLIGH-------HGPISVLEFNDTNK--LLLSAS-------DDGTLRIWHGGN 278 (425)
T ss_dssp EETTEEEEECGGGCEEEEETTCSSCSEEECCC-------SSCEEEEEEETTTT--EEEEEE-------TTSCEEEECSSS
T ss_pred cCCCEEEEEcCCCeEEEEEcCCCceeeeeccC-------CCceEEEEECCCCC--EEEEEc-------CCCEEEEEECCC
Confidence 34566666666778999999887543221111 12344566776543 222222 234578888776
Q ss_pred CCeEE-ccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCceeE
Q 046902 178 NSWRR-ISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHV 255 (393)
Q Consensus 178 ~~W~~-~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~ 255 (393)
+.-.. +.... .....-...-+| ....+.. ...|..+|+.+.+... +...... -.
T Consensus 279 ~~~~~~~~~~~-------------~~i~~~~~~~~~-~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~-------i~ 334 (425)
T 1r5m_A 279 GNSQNCFYGHS-------------QSIVSASWVGDD-KVISCSM---DGSVRLWSLKQNTLLALSIVDGVP-------IF 334 (425)
T ss_dssp BSCSEEECCCS-------------SCEEEEEEETTT-EEEEEET---TSEEEEEETTTTEEEEEEECTTCC-------EE
T ss_pred CccceEecCCC-------------ccEEEEEECCCC-EEEEEeC---CCcEEEEECCCCcEeEecccCCcc-------EE
Confidence 53211 11000 000111112245 3333222 3589999998765433 2221111 11
Q ss_pred EEEE-eCCeEEEEEEcCCCeEEEEEEeecCC---------CCCe-----EEEEEeeCCCCCCCcceeeEEEEEeCCcEEE
Q 046902 256 DVGS-LEGCLCVFRFYNLVYVDMWMMKEHAV---------KESW-----TKLFSVQEPTPTRSFLFLRPLGYSRNGVKLL 320 (393)
Q Consensus 256 ~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~---------~~~W-----~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~ 320 (393)
.+.. -+|.+.++...+. .+.||-++.... ...| ..+..+..... .....-+.+.++|..|+
T Consensus 335 ~~~~s~~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~ 410 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDG-QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD---NDYIFDLSWNCAGNKIS 410 (425)
T ss_dssp EEEECTTSSEEEEEETTS-CEEEEECHHHHC--------------CEECCEEEEECCTTC---CCCEEEEEECTTSSEEE
T ss_pred EEEEcCCCCEEEEEECCC-eEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc---CCceEEEEccCCCceEE
Confidence 2222 2566666555444 899998864220 0011 13333332110 00244567778888777
Q ss_pred EEEcCcEEEEEECCC
Q 046902 321 LEVRREKLVWFDLET 335 (393)
Q Consensus 321 l~~~~~~l~~yd~~t 335 (393)
....++.+..||++.
T Consensus 411 ~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 411 VAYSLQEGSVVAIPG 425 (425)
T ss_dssp EEESSSCCEEEECCC
T ss_pred EEecCceEEEEeecC
Confidence 777777799999863
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=90.03 E-value=8.8 Score=33.17 Aligned_cols=191 Identities=14% Similarity=0.064 Sum_probs=90.6
Q ss_pred ceEEEeeCCceEEEEeccccceec-cCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCC-
Q 046902 101 GLIALCNSVQELALFNPSTRKLKT-LPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTN- 178 (393)
Q Consensus 101 GLl~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~- 178 (393)
.+|.....+..++++|+.|++... ++... . . . .....++|.. +++. . ....+..|+. ++
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~--~--~-~--~~~~~~~pdG---~ilv-s-------~~~~V~~~d~-~G~ 66 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEK--G--W-E--CNSVAATKAG---EILF-S-------YSKGAKMITR-DGR 66 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCT--T--C-C--CCEEEECTTS---CEEE-E-------CBSEEEEECT-TSC
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCc--c--C-C--CcCeEECCCC---CEEE-e-------CCCCEEEECC-CCC
Confidence 344444456789999998987443 33321 0 0 0 1122334432 2333 2 1235777777 44
Q ss_pred -CeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEE
Q 046902 179 -SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDV 257 (393)
Q Consensus 179 -~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l 257 (393)
.|+.-..-. . ......+..+|.++..... ....|+.||...+....+.+..............-
T Consensus 67 ~~W~~~~~~~------------~-~~~~~~~~~dG~~lv~~~~--~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~ 131 (276)
T 3no2_A 67 ELWNIAAPAG------------C-EMQTARILPDGNALVAWCG--HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQIN 131 (276)
T ss_dssp EEEEEECCTT------------C-EEEEEEECTTSCEEEEEES--TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred EEEEEcCCCC------------c-cccccEECCCCCEEEEecC--CCCEEEEEeCCCCEEEEEeccCCCCcccccccCce
Confidence 466432100 0 0112234467777665332 13578899986554444443322100000001011
Q ss_pred EEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCc
Q 046902 258 GSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNS 337 (393)
Q Consensus 258 ~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~ 337 (393)
...+|.+.++..... .+..|-.+ | +..|+... .. . ..-....++|+.++....+.+++.+|++|++
T Consensus 132 ~~~~G~~lv~~~~~~-~v~~~d~~--G-~~~w~~~~--~~-~-------~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 132 KNKKGNYLVPLFATS-EVREIAPN--G-QLLNSVKL--SG-T-------PFSSAFLDNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp ECTTSCEEEEETTTT-EEEEECTT--S-CEEEEEEC--SS-C-------CCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred ECCCCCEEEEecCCC-EEEEECCC--C-CEEEEEEC--CC-C-------ccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence 233677665554333 55444332 3 34465322 11 0 1113334577767666666689999999766
Q ss_pred EE
Q 046902 338 LR 339 (393)
Q Consensus 338 ~~ 339 (393)
+.
T Consensus 198 ~~ 199 (276)
T 3no2_A 198 IV 199 (276)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=89.88 E-value=11 Score=34.16 Aligned_cols=99 Identities=10% Similarity=0.029 Sum_probs=57.0
Q ss_pred CcEEEEEECCCceeee-ecCCCcccccCCceeEEEEE-eCCeEEEEE-EcCCCeEEEEEEeecCCCCCeEEEEEeeCCCC
Q 046902 224 RSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVDVGS-LEGCLCVFR-FYNLVYVDMWMMKEHAVKESWTKLFSVQEPTP 300 (393)
Q Consensus 224 ~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~l~~-~~G~L~~~~-~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~ 300 (393)
...|..+|+.+.+... +..+... ..+.- -+|...++. ...+..+.||.+.. ........+....
T Consensus 283 d~~i~i~d~~~~~~~~~~~~~~~v--------~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~----~~~~~~~~~~~h~- 349 (401)
T 4aez_A 283 DKQIHFWNAATGARVNTVDAGSQV--------TSLIWSPHSKEIMSTHGFPDNNLSIWSYSS----SGLTKQVDIPAHD- 349 (401)
T ss_dssp TCEEEEEETTTCCEEEEEECSSCE--------EEEEECSSSSEEEEEECTTTCEEEEEEEET----TEEEEEEEEECCS-
T ss_pred CCEEEEEECCCCCEEEEEeCCCcE--------EEEEECCCCCeEEEEeecCCCcEEEEecCC----ccceeEEEecCCC-
Confidence 3578889987765433 3322111 12222 255555554 33445999999884 2355555444321
Q ss_pred CCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEE
Q 046902 301 TRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLR 339 (393)
Q Consensus 301 ~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~ 339 (393)
....-+.+.++|..|+....++.+..||+.+++..
T Consensus 350 ----~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 350 ----TRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp ----SCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred ----CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 12344677788887877777778999999987644
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.85 E-value=9.8 Score=33.45 Aligned_cols=202 Identities=8% Similarity=0.014 Sum_probs=92.8
Q ss_pred ec-eEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCC
Q 046902 100 NG-LIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTN 178 (393)
Q Consensus 100 ~G-Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~ 178 (393)
+| +|+....+..+.|||..+++...+.... .....+.+.+..+.-.++... ....+.+|+.+++
T Consensus 97 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~l~~~~-------~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 97 DGSKVFTASCDKTAKMWDLSSNQAIQIAQHD--------APVKTIHWIKAPNYSCVMTGS-------WDKTLKFWDTRSS 161 (368)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECS--------SCEEEEEEEECSSCEEEEEEE-------TTSEEEEECSSCS
T ss_pred CCCEEEEEcCCCcEEEEEcCCCCceeecccc--------CceEEEEEEeCCCCCEEEEcc-------CCCcEEEEECCCC
Confidence 44 4444445678999999998876643322 123344553222222333322 2356888988776
Q ss_pred CeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCcee--eeecCCCcccccCCceeEE
Q 046902 179 SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEF--YQLPLPDSVNVSYANVHVD 256 (393)
Q Consensus 179 ~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~--~~i~lP~~~~~~~~~~~~~ 256 (393)
.-...-..+ .....+...+.....+.. ...+..+|+.+..- ..+..+... ......
T Consensus 162 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 219 (368)
T 3mmy_A 162 NPMMVLQLP---------------ERCYCADVIYPMAVVATA---ERGLIVYQLENQPSEFRRIESPLKH----QHRCVA 219 (368)
T ss_dssp SCSEEEECS---------------SCEEEEEEETTEEEEEEG---GGCEEEEECSSSCEEEEECCCSCSS----CEEEEE
T ss_pred cEEEEEecC---------------CCceEEEecCCeeEEEeC---CCcEEEEEeccccchhhhccccccC----CCceEE
Confidence 421110111 001111112222222222 24688888876543 333333221 111112
Q ss_pred EEEeC---CeEEEEEEcCCCeEEEEEEeecCC-CCCeEEEEEeeCCCC---CCCcceeeEEEEEeCCcEEEEEEcCcEEE
Q 046902 257 VGSLE---GCLCVFRFYNLVYVDMWMMKEHAV-KESWTKLFSVQEPTP---TRSFLFLRPLGYSRNGVKLLLEVRREKLV 329 (393)
Q Consensus 257 l~~~~---G~L~~~~~~~~~~~~iW~l~~~~~-~~~W~~~~~i~~~~~---~~~~~~~~~~~~~~~g~~i~l~~~~~~l~ 329 (393)
+.... ... ++....+..+.||.++.... .........-..... ........-+.+.++|..++....++.+.
T Consensus 220 ~~~~~~~~~~~-~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~ 298 (368)
T 3mmy_A 220 IFKDKQNKPTG-FALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFS 298 (368)
T ss_dssp EEECTTSCEEE-EEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEE
T ss_pred EcccCCCCCCe-EEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEE
Confidence 22111 112 33333344899998875321 111111110000000 00000133456677887777777777899
Q ss_pred EEECCCCcEE
Q 046902 330 WFDLETNSLR 339 (393)
Q Consensus 330 ~yd~~t~~~~ 339 (393)
.||+++++..
T Consensus 299 iwd~~~~~~~ 308 (368)
T 3mmy_A 299 FWDKDARTKL 308 (368)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCcEE
Confidence 9999987654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=89.72 E-value=11 Score=34.04 Aligned_cols=197 Identities=8% Similarity=0.055 Sum_probs=101.5
Q ss_pred eec-eEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 99 CNG-LIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 99 ~~G-Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
.+| +|+....+..+.|||..+++....-... ......+.+.|..+ .++... ....+.+|+..+
T Consensus 107 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~--~l~s~s-------~d~~i~iwd~~~ 170 (420)
T 3vl1_A 107 LQMRRFILGTTEGDIKVLDSNFNLQREIDQAH-------VSEITKLKFFPSGE--ALISSS-------QDMQLKIWSVKD 170 (420)
T ss_dssp SSSCEEEEEETTSCEEEECTTSCEEEEETTSS-------SSCEEEEEECTTSS--EEEEEE-------TTSEEEEEETTT
T ss_pred cCCCEEEEEECCCCEEEEeCCCcceeeecccc-------cCccEEEEECCCCC--EEEEEe-------CCCeEEEEeCCC
Confidence 344 4444445678999999988766543222 22345667776533 233222 245788999876
Q ss_pred CCe-EEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCceeE
Q 046902 178 NSW-RRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHV 255 (393)
Q Consensus 178 ~~W-~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~ 255 (393)
+.= +.+..-. .....-...-+|.....+.. ...|..+|+.+.+... +..+.... ... .
T Consensus 171 ~~~~~~~~~h~-------------~~v~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~---~~v-~ 230 (420)
T 3vl1_A 171 GSNPRTLIGHR-------------ATVTDIAIIDRGRNVLSASL---DGTIRLWECGTGTTIHTFNRKENPH---DGV-N 230 (420)
T ss_dssp CCCCEEEECCS-------------SCEEEEEEETTTTEEEEEET---TSCEEEEETTTTEEEEEECBTTBTT---CCE-E
T ss_pred CcCceEEcCCC-------------CcEEEEEEcCCCCEEEEEcC---CCcEEEeECCCCceeEEeecCCCCC---CCc-c
Confidence 531 1111000 00000011124443333332 2468889988765433 33322111 110 1
Q ss_pred EEEE----------------------eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEE
Q 046902 256 DVGS----------------------LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYS 313 (393)
Q Consensus 256 ~l~~----------------------~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~ 313 (393)
.+.. -+|.+.++...+. .+.||-+... .....+.... .....-+.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~------~~~~~~~~~~----~~~v~~~~~~ 299 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG-VITVHNVFSK------EQTIQLPSKF----TCSCNSLTVD 299 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS-CEEEEETTTC------CEEEEECCTT----SSCEEEEEEC
T ss_pred EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC-eEEEEECCCC------ceeEEccccc----CCCceeEEEe
Confidence 1111 2566666655544 8999987631 1223332211 1124456777
Q ss_pred eCCc-EEEEEEcCcEEEEEECCCCc--EEEEE
Q 046902 314 RNGV-KLLLEVRREKLVWFDLETNS--LRTVK 342 (393)
Q Consensus 314 ~~g~-~i~l~~~~~~l~~yd~~t~~--~~~v~ 342 (393)
++|. .++....++.+..||+++.+ +..+.
T Consensus 300 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 331 (420)
T 3vl1_A 300 GNNANYIYAGYENGMLAQWDLRSPECPVGEFL 331 (420)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh
Confidence 7777 77777777789999999864 44443
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=89.54 E-value=13 Score=34.37 Aligned_cols=199 Identities=13% Similarity=0.092 Sum_probs=95.3
Q ss_pred EeeeeeceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEE
Q 046902 95 VLGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYS 174 (393)
Q Consensus 95 ~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vys 174 (393)
.+...+++|+....+..+.|||..+++...--.. +......+.+.+.. .++... ....+.+++
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~-------h~~~V~~l~~~~~~---~l~s~s-------~dg~i~vwd 189 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSG-------HDGGVWALKYAHGG---ILVSGS-------TDRTVRVWD 189 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECC-------CSSCEEEEEECSTT---EEEEEE-------TTSCEEEEE
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeC-------CCcCEEEEEEcCCC---EEEEEe-------CCCCEEEEE
Confidence 3444556666666677899999988874432111 11233445555433 344333 234688899
Q ss_pred eCCCCeEEccccCcccccccccccccccccCceeEe----CceEEEeccCCCCCcEEEEEECCCceeeeec---------
Q 046902 175 LKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA----GGALHWVSPKSSTRSVIVAFDLVAEEFYQLP--------- 241 (393)
Q Consensus 175 s~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~----~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~--------- 241 (393)
.+++.-... +. .+. ..-.++.+ +|.....+.. ...|..+|+.+..-....
T Consensus 190 ~~~~~~~~~--~~----------~h~--~~v~~l~~~~~~~~~~l~s~s~---d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 190 IKKGCCTHV--FE----------GHN--STVRCLDIVEYKNIKYIVTGSR---DNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp TTTTEEEEE--EC----------CCS--SCEEEEEEEESSSCEEEEEEET---TSCEEEEECCCCCCC------CCSSEE
T ss_pred CCCCcEEEE--EC----------CCC--CccEEEEEecCCCCCEEEEEcC---CCcEEEeeCCCCcccccccccCCcceE
Confidence 887742211 11 000 00011111 2333333222 246788888765422110
Q ss_pred --CCCcc----cc-cCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEe
Q 046902 242 --LPDSV----NV-SYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSR 314 (393)
Q Consensus 242 --lP~~~----~~-~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~ 314 (393)
.|... .. ........-...+|.+.++...+. .+.+|-+.. -..+..+.... .....+.+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~-~i~vwd~~~------~~~~~~~~~~~-----~~v~~~~~~~ 320 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN-TLIVWDVAQ------MKCLYILSGHT-----DRIYSTIYDH 320 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTS-CEEEEETTT------TEEEEEECCCS-----SCEEEEEEET
T ss_pred eeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCC-eEEEEECCC------CcEEEEecCCC-----CCEEEEEEcC
Confidence 00000 00 000001112234555555555444 889997653 12333333211 1234566677
Q ss_pred CCcEEEEEEcCcEEEEEECCCCcEE
Q 046902 315 NGVKLLLEVRREKLVWFDLETNSLR 339 (393)
Q Consensus 315 ~g~~i~l~~~~~~l~~yd~~t~~~~ 339 (393)
+|..++....++.+..||+++++..
T Consensus 321 ~~~~l~sg~~dg~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 321 ERKRCISASMDTTIRIWDLENGELM 345 (464)
T ss_dssp TTTEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEE
Confidence 7777777766667888888877643
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=89.53 E-value=11 Score=33.53 Aligned_cols=77 Identities=10% Similarity=0.050 Sum_probs=44.8
Q ss_pred CCeEEEEEEcCCCeEEEEEEeecCCCC--C-eEEE---EEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-cCcEEEEEEC
Q 046902 261 EGCLCVFRFYNLVYVDMWMMKEHAVKE--S-WTKL---FSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-RREKLVWFDL 333 (393)
Q Consensus 261 ~G~L~~~~~~~~~~~~iW~l~~~~~~~--~-W~~~---~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~~~~l~~yd~ 333 (393)
+|+..++.......+.+|.++...... . .... ..+..... ....-+++.++|..+++.. .+..+..||+
T Consensus 165 dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 240 (361)
T 3scy_A 165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG----SGPRHLIFNSDGKFAYLINEIGGTVIAFRY 240 (361)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT----CCEEEEEECTTSSEEEEEETTTCEEEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCC----CCCeEEEEcCCCCEEEEEcCCCCeEEEEEe
Confidence 776444444444489999988532100 1 2222 22222111 1234567788988888776 3567999999
Q ss_pred CCCcEEEE
Q 046902 334 ETNSLRTV 341 (393)
Q Consensus 334 ~t~~~~~v 341 (393)
++++++.+
T Consensus 241 ~~g~~~~~ 248 (361)
T 3scy_A 241 ADGMLDEI 248 (361)
T ss_dssp ETTEEEEE
T ss_pred cCCceEEe
Confidence 98887666
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=89.19 E-value=11 Score=32.92 Aligned_cols=119 Identities=13% Similarity=0.067 Sum_probs=66.2
Q ss_pred Cce-EEEeccCCCCCcEEEEEECC--Cceee---ee-cCCCcccccCCceeEEEEEe-CCeEEEEEEcCCCeEEEEEEee
Q 046902 211 GGA-LHWVSPKSSTRSVIVAFDLV--AEEFY---QL-PLPDSVNVSYANVHVDVGSL-EGCLCVFRFYNLVYVDMWMMKE 282 (393)
Q Consensus 211 ~G~-lyw~~~~~~~~~~il~fD~~--~e~~~---~i-~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~ 282 (393)
+|. +|..... ...|..+|+. +.++. .+ .+|.... .......+... +|+..++.......+.+|.++.
T Consensus 188 dg~~l~~~~~~---~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 188 NEQYAYCVNEL---NSSVDVWELKDPHGNIECVQTLDMMPENFS--DTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp TSSEEEEEETT---TTEEEEEESSCTTSCCEEEEEEECSCTTCC--SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEEeCC---CCEEEEEEecCCCCcEEEEeeccccCcccc--ccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 455 4444322 3578889984 34432 22 2443321 11111123332 5644444444445899999874
Q ss_pred cCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc-CcEEEEE--ECCCCcEEEEE
Q 046902 283 HAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REKLVWF--DLETNSLRTVK 342 (393)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~l~~y--d~~t~~~~~v~ 342 (393)
. ...+..+..+.... ...-+++.++|..+++... +..+..| |+++++++.+.
T Consensus 263 ~--~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 263 D--GSVLSKEGFQPTET------QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp T--SCCEEEEEEEECSS------SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEE
T ss_pred C--CCceEEeeeecCCC------ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcc
Confidence 2 24567776666432 1334677888888888763 3556666 88888888773
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=89.16 E-value=11 Score=33.25 Aligned_cols=189 Identities=14% Similarity=0.129 Sum_probs=95.8
Q ss_pred ec-eEEEeeCCceEEEEeccccceec-cCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 100 NG-LIALCNSVQELALFNPSTRKLKT-LPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 100 ~G-Ll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
+| +|+....+..+.|||..+++... ++... .....+.+.|.. .+ ++... ....+.+|+..+
T Consensus 66 d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~--------~~v~~~~~s~~~-~~-l~s~~-------~d~~v~iw~~~~ 128 (340)
T 1got_B 66 DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS--------SWVMTCAYAPSG-NY-VACGG-------LDNICSIYNLKT 128 (340)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECSS--------SCEEEEEECTTS-SE-EEEEE-------TTCEEEEEETTT
T ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEeecCC--------ccEEEEEECCCC-CE-EEEEe-------CCCeEEEEECcc
Confidence 44 33334456789999998876443 33221 223455666643 22 22222 235688888876
Q ss_pred CC--eEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCcee
Q 046902 178 NS--WRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVH 254 (393)
Q Consensus 178 ~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~ 254 (393)
+. .+....+. .+......-...-+|.+.- +. ....|..+|+.+.+... +.... .. -
T Consensus 129 ~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~l~s-~s---~d~~i~~wd~~~~~~~~~~~~h~------~~-v 187 (340)
T 1got_B 129 REGNVRVSRELA----------GHTGYLSCCRFLDDNQIVT-SS---GDTTCALWDIETGQQTTTFTGHT------GD-V 187 (340)
T ss_dssp CSBSCEEEEEEE----------CCSSCEEEEEEEETTEEEE-EE---TTSCEEEEETTTTEEEEEECCCS------SC-E
T ss_pred CCCcceeEEEec----------CCCccEEEEEECCCCcEEE-EE---CCCcEEEEECCCCcEEEEEcCCC------Cc-e
Confidence 42 22111111 0000000001112344322 11 13568899998766433 22111 11 1
Q ss_pred EEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEEC
Q 046902 255 VDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDL 333 (393)
Q Consensus 255 ~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~ 333 (393)
..+... +|.+.+.+..+. .+.||-+... ....++.... ....-+++.++|..++....++.+..||+
T Consensus 188 ~~~~~~~~~~~l~sg~~d~-~v~~wd~~~~------~~~~~~~~h~-----~~v~~v~~~p~~~~l~s~s~d~~v~iwd~ 255 (340)
T 1got_B 188 MSLSLAPDTRLFVSGACDA-SAKLWDVREG------MCRQTFTGHE-----SDINAICFFPNGNAFATGSDDATCRLFDL 255 (340)
T ss_dssp EEEEECTTSSEEEEEETTS-CEEEEETTTC------SEEEEECCCS-----SCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEECCCCCEEEEEeCCC-cEEEEECCCC------eeEEEEcCCc-----CCEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 123332 667666665544 8999977531 1223333211 12445677788887777777778999999
Q ss_pred CCCcE
Q 046902 334 ETNSL 338 (393)
Q Consensus 334 ~t~~~ 338 (393)
.+++.
T Consensus 256 ~~~~~ 260 (340)
T 1got_B 256 RADQE 260 (340)
T ss_dssp TTTEE
T ss_pred CCCcE
Confidence 98763
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=88.97 E-value=19 Score=35.63 Aligned_cols=193 Identities=12% Similarity=0.025 Sum_probs=101.2
Q ss_pred eEEEEeccccce--eccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCc
Q 046902 111 ELALFNPSTRKL--KTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPR 188 (393)
Q Consensus 111 ~~~V~NP~T~~~--~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~ 188 (393)
.+++++.-|++- +.+-..+ .......+..+.+.. .|-++.... .. ....+.+++..++.|+.+..-.
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~-----~~~~~~~~~~~SpDG-~~l~~~~~~--~~--~~~~l~~~~~~~~~~~~l~~~~- 271 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERT-----GDPTTFLQSDLSRDG-KYLFVYILR--GW--SENDVYWKRPGEKDFRLLVKGV- 271 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCC-----CCTTCEEEEEECTTS-CCEEEEEEE--TT--TEEEEEEECTTCSSCEEEEECS-
T ss_pred EEEEEECCCCchhceEEEecC-----CCCEEEEEEEECCCC-CEEEEEEeC--CC--CceEEEEEcCCCCceEEeecCC-
Confidence 489999888763 2222211 011223455566544 444443321 10 2334555555567787764321
Q ss_pred ccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCce---eeeecCCCcccccCCceeEEEEEeCCeEE
Q 046902 189 FLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEE---FYQLPLPDSVNVSYANVHVDVGSLEGCLC 265 (393)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~---~~~i~lP~~~~~~~~~~~~~l~~~~G~L~ 265 (393)
. .....+..+|.+|+.+........|..+|+.+.. |..+-.+... .. -..+...+|.|.
T Consensus 272 ---------~----~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~----~~-l~~~~~~~~~lv 333 (695)
T 2bkl_A 272 ---------G----AKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSS----AS-LLSVSIVGGHLS 333 (695)
T ss_dssp ---------S----CCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSS----CE-EEEEEEETTEEE
T ss_pred ---------C----ceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCC----Ce-EEEEEEECCEEE
Confidence 0 1112344566666665433335789999997654 6665332211 11 113344488887
Q ss_pred EEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC----cEEEEEECCCCcEEEE
Q 046902 266 VFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR----EKLVWFDLETNSLRTV 341 (393)
Q Consensus 266 ~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~----~~l~~yd~~t~~~~~v 341 (393)
+....+. ...||+++-.+ . ....+..... .....+++.++++.+++...+ ..++.||+++++.+.+
T Consensus 334 ~~~~~dg-~~~l~~~~~~g--~---~~~~l~~~~~----~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 334 LEYLKDA-TSEVRVATLKG--K---PVRTVQLPGV----GAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp EEEEETT-EEEEEEEETTC--C---EEEECCCSSS----SEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred EEEEECC-EEEEEEEeCCC--C---eeEEecCCCC----eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 7766544 78899887422 1 2334443210 011223344567777766432 3699999999887666
Q ss_pred E
Q 046902 342 K 342 (393)
Q Consensus 342 ~ 342 (393)
.
T Consensus 404 ~ 404 (695)
T 2bkl_A 404 A 404 (695)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=88.87 E-value=11 Score=32.77 Aligned_cols=109 Identities=9% Similarity=0.043 Sum_probs=59.3
Q ss_pred cEEEEEECCC-ceeee-----ecCCCcccccCCceeEEEEE-eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeC
Q 046902 225 SVIVAFDLVA-EEFYQ-----LPLPDSVNVSYANVHVDVGS-LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQE 297 (393)
Q Consensus 225 ~~il~fD~~~-e~~~~-----i~lP~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~ 297 (393)
..|..||+.+ .+... +..+.... ...+.. -+|+..++.......+.+|.++.. ...+.....+..
T Consensus 151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~--~g~~~~~~~~~~ 222 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVAQDPAEVTTVEGAG------PRHMVFHPNEQYAYCVNELNSSVDVWELKDP--HGNIECVQTLDM 222 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECSTTCC------EEEEEECTTSSEEEEEETTTTEEEEEESSCT--TSCCEEEEEEEC
T ss_pred CEEEEEEecCCCceeeecccccccCCCCC------cceEEECCCCCEEEEEeCCCCEEEEEEecCC--CCcEEEEeeccc
Confidence 5799999987 55542 23332211 112222 266633333333448999998642 234554444442
Q ss_pred C-CCCCCcceeeEEEEEeCCcEEEEEE-cCcEEEEEECC--CCcEEEE
Q 046902 298 P-TPTRSFLFLRPLGYSRNGVKLLLEV-RREKLVWFDLE--TNSLRTV 341 (393)
Q Consensus 298 ~-~~~~~~~~~~~~~~~~~g~~i~l~~-~~~~l~~yd~~--t~~~~~v 341 (393)
. ..........-+.+.++|..+++.. .+..+..||++ +++.+.+
T Consensus 223 ~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~ 270 (343)
T 1ri6_A 223 MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE 270 (343)
T ss_dssp SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred cCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence 1 1111111223467778888787665 34579999998 6666665
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=88.83 E-value=17 Score=34.80 Aligned_cols=71 Identities=13% Similarity=-0.004 Sum_probs=42.6
Q ss_pred CCe-EEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeC-CcEEEEEEcCcEEEEEECCCCcE
Q 046902 261 EGC-LCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRN-GVKLLLEVRREKLVWFDLETNSL 338 (393)
Q Consensus 261 ~G~-L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~-g~~i~l~~~~~~l~~yd~~t~~~ 338 (393)
+|. +.+.... +..+.+|-++. ...+..+..... ......-+.+.++ |+.++....++.+..||+++++.
T Consensus 171 ~~~~~l~~~~~-d~~v~vwd~~~------~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 241 (615)
T 1pgu_A 171 SRPMRSMTVGD-DGSVVFYQGPP------FKFSASDRTHHK--QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF 241 (615)
T ss_dssp SSSCEEEEEET-TTEEEEEETTT------BEEEEEECSSSC--TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE
T ss_pred CCCcEEEEEeC-CCcEEEEeCCC------cceeeeecccCC--CCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE
Confidence 454 4444444 34899997542 345555543210 0002345677788 88777777777799999998775
Q ss_pred EE
Q 046902 339 RT 340 (393)
Q Consensus 339 ~~ 340 (393)
..
T Consensus 242 ~~ 243 (615)
T 1pgu_A 242 LK 243 (615)
T ss_dssp EE
T ss_pred eE
Confidence 43
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=88.75 E-value=12 Score=32.83 Aligned_cols=208 Identities=8% Similarity=0.012 Sum_probs=102.1
Q ss_pred eeeceEEEee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeC
Q 046902 98 SCNGLIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLK 176 (393)
Q Consensus 98 s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~ 176 (393)
+.+|-|.+.+ ....++++||.+++...+.... .....++.+++... ++.... . .......+.+|+..
T Consensus 53 ~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~~~~i~~~~dg~---l~v~~~-~-~~~~~~~i~~~d~~ 120 (333)
T 2dg1_A 53 DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH-------KANPAAIKIHKDGR---LFVCYL-G-DFKSTGGIFAATEN 120 (333)
T ss_dssp CTTSCEEEEETTTCEEEEECTTTCCEEEEEECS-------SSSEEEEEECTTSC---EEEEEC-T-TSSSCCEEEEECTT
T ss_pred CCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC-------CCCcceEEECCCCc---EEEEeC-C-CCCCCceEEEEeCC
Confidence 3456665543 3567999999998877653211 11245667776542 322221 0 00012467788887
Q ss_pred CCCeEEc-cccCcccccccccccccccccCceeEeCceEEEeccCC---CCCcEEEEEECCCceeeeecCCCcccccCCc
Q 046902 177 TNSWRRI-SNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS---STRSVIVAFDLVAEEFYQLPLPDSVNVSYAN 252 (393)
Q Consensus 177 t~~W~~~-~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~---~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~ 252 (393)
++.-+.+ ..... ......-.+.-+|.+|...... .....|..+|..+.++..+.- ... .
T Consensus 121 ~~~~~~~~~~~~~-----------~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~---~- 183 (333)
T 2dg1_A 121 GDNLQDIIEDLST-----------AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NIS---V- 183 (333)
T ss_dssp SCSCEEEECSSSS-----------CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EES---S-
T ss_pred CCEEEEEEccCcc-----------CCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCC---c-
Confidence 7765422 11110 0000111122357776544320 113579999988766655421 110 1
Q ss_pred eeEEEEE-eCCe-EEEEEEcCCCeEEEEEEeecCCCCCeEEEE-Ee--eCCCCCCCcceeeEEEEEeCCcEEEEEE-cCc
Q 046902 253 VHVDVGS-LEGC-LCVFRFYNLVYVDMWMMKEHAVKESWTKLF-SV--QEPTPTRSFLFLRPLGYSRNGVKLLLEV-RRE 326 (393)
Q Consensus 253 ~~~~l~~-~~G~-L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~-~i--~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~~~ 326 (393)
...++. -+|+ |++..... ..+.+|.++..+ ....... .+ .... .....-+++.++|. |++.. .+.
T Consensus 184 -~~~i~~~~dg~~l~v~~~~~-~~i~~~d~~~~g--~~~~~~~~~~~~~~~~----~~~~~~i~~d~~G~-l~v~~~~~~ 254 (333)
T 2dg1_A 184 -ANGIALSTDEKVLWVTETTA-NRLHRIALEDDG--VTIQPFGATIPYYFTG----HEGPDSCCIDSDDN-LYVAMYGQG 254 (333)
T ss_dssp -EEEEEECTTSSEEEEEEGGG-TEEEEEEECTTS--SSEEEEEEEEEEECCS----SSEEEEEEEBTTCC-EEEEEETTT
T ss_pred -ccceEECCCCCEEEEEeCCC-CeEEEEEecCCC--cCcccccceEEEecCC----CCCCCceEECCCCC-EEEEEcCCC
Confidence 112333 2565 66655433 367777665322 2222111 11 1111 01233456666776 55554 345
Q ss_pred EEEEEECCCCcEEEEEE
Q 046902 327 KLVWFDLETNSLRTVKI 343 (393)
Q Consensus 327 ~l~~yd~~t~~~~~v~~ 343 (393)
.+..||++++.++.+..
T Consensus 255 ~v~~~d~~g~~~~~~~~ 271 (333)
T 2dg1_A 255 RVLVFNKRGYPIGQILI 271 (333)
T ss_dssp EEEEECTTSCEEEEEEC
T ss_pred EEEEECCCCCEEEEEEc
Confidence 79999998777777754
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=88.26 E-value=13 Score=32.66 Aligned_cols=148 Identities=12% Similarity=-0.005 Sum_probs=78.1
Q ss_pred ccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCce-EEEeccCCCCCcEEEEEECCCcee-eeecCCC
Q 046902 167 DVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIVAFDLVAEEF-YQLPLPD 244 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~e~~-~~i~lP~ 244 (393)
...+.+++..++.-...-... . ....-.+.-+|. +|..... ...|..+|+.+.+. ..++.+.
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~------------~-~~~~~~~s~dg~~l~v~~~~---~~~v~~~d~~~~~~~~~~~~~~ 131 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHND------------L-KPFGATINNTTQTLWFGNTV---NSAVTAIDAKTGEVKGRLVLDD 131 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEES------------S-CCCSEEEETTTTEEEEEETT---TTEEEEEETTTCCEEEEEESCC
T ss_pred CccEEEEcCCCCeEEEEEecC------------C-CcceEEECCCCCEEEEEecC---CCEEEEEeCCCCeeEEEEecCC
Confidence 346788888776533221111 0 011223344666 5554332 35899999987765 4455543
Q ss_pred ccccc-CCcee-EEEEEe-CCe-EEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEE
Q 046902 245 SVNVS-YANVH-VDVGSL-EGC-LCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLL 320 (393)
Q Consensus 245 ~~~~~-~~~~~-~~l~~~-~G~-L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~ 320 (393)
..... ..... ..+... +|+ |++........+.+|-++ ....+..+..... ....+.+.++|+.++
T Consensus 132 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~------~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~ 200 (353)
T 3vgz_A 132 RKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG------NIKLKTAIQNTGK-----MSTGLALDSEGKRLY 200 (353)
T ss_dssp CCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT------TTEEEEEECCCCT-----TCCCCEEETTTTEEE
T ss_pred CccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC------CCceEEEecCCCC-----ccceEEECCCCCEEE
Confidence 22100 00111 123332 554 555554333356665433 2345555552111 123467788888888
Q ss_pred EEEcCcEEEEEECCCCcEEEE
Q 046902 321 LEVRREKLVWFDLETNSLRTV 341 (393)
Q Consensus 321 l~~~~~~l~~yd~~t~~~~~v 341 (393)
+...+..+..||+++++....
T Consensus 201 ~~~~~~~i~~~d~~~~~~~~~ 221 (353)
T 3vgz_A 201 TTNADGELITIDTADNKILSR 221 (353)
T ss_dssp EECTTSEEEEEETTTTEEEEE
T ss_pred EEcCCCeEEEEECCCCeEEEE
Confidence 887777899999999876543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.22 E-value=13 Score=32.68 Aligned_cols=70 Identities=9% Similarity=0.079 Sum_probs=44.1
Q ss_pred CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEE
Q 046902 261 EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRT 340 (393)
Q Consensus 261 ~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~ 340 (393)
+|.+.++...+. .+.+|-+... ...+..+.... ....-+.+.++|..++....++.+..||+++.+...
T Consensus 186 ~~~~l~~~~~dg-~i~i~d~~~~-----~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 186 KGKYIIAGHKDG-KISKYDVSNN-----YEYVDSIDLHE-----KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp GGCEEEEEETTS-EEEEEETTTT-----TEEEEEEECCS-----SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEcCCC-EEEEEECCCC-----cEeEEEEecCC-----CceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 566555554443 8999977631 23444444321 123456777788888877777789999999877554
Q ss_pred E
Q 046902 341 V 341 (393)
Q Consensus 341 v 341 (393)
.
T Consensus 255 ~ 255 (369)
T 3zwl_B 255 K 255 (369)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=88.11 E-value=11 Score=34.53 Aligned_cols=115 Identities=13% Similarity=0.047 Sum_probs=68.0
Q ss_pred eCceEEEeccCCCCCcEEEEEECCCceeeee---cC-C-----CcccccCCceeEEEEEeCCeEEEEEEcC------CCe
Q 046902 210 AGGALHWVSPKSSTRSVIVAFDLVAEEFYQL---PL-P-----DSVNVSYANVHVDVGSLEGCLCVFRFYN------LVY 274 (393)
Q Consensus 210 ~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i---~l-P-----~~~~~~~~~~~~~l~~~~G~L~~~~~~~------~~~ 274 (393)
.+|.++|.+.. ..+.++|+.++.-..+ .+ . ..... .......+-.-+++||+..... ...
T Consensus 236 ~dG~~~~vs~~----g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p-~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~ 310 (386)
T 3sjl_D 236 KAGRLVWPTYT----GKIHQIDLSSGDAKFLPAVEALTEAERADGWRP-GGWQQVAYHRALDRIYLLVDQRDEWRHKTAS 310 (386)
T ss_dssp TTTEEEEEBTT----SEEEEEECTTSSCEECCCEESSCHHHHHTTEEE-CSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred CCCcEEEEeCC----CEEEEEECCCCcceeecceeccccccccccccC-CCcceeeECCCCCeEEEEeccccccccCCCC
Confidence 47889998764 5799999987653222 10 0 01000 0000122222367778775421 225
Q ss_pred EEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCc-EEEEEEc-CcEEEEEECCCCcEE
Q 046902 275 VDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGV-KLLLEVR-REKLVWFDLETNSLR 339 (393)
Q Consensus 275 ~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~-~i~l~~~-~~~l~~yd~~t~~~~ 339 (393)
-.||+++- ..+..+.+|.+.. ...-+++.++|. .+|.... ++.+..||..|++..
T Consensus 311 ~~V~viD~----~t~kv~~~i~vg~------~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 311 RFVVVLDA----KTGERLAKFEMGH------EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp EEEEEEET----TTCCEEEEEEEEE------EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CEEEEEEC----CCCeEEEEEECCC------CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 68999984 4567777777632 234578888875 5665443 467999999998743
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=87.78 E-value=13 Score=32.39 Aligned_cols=72 Identities=8% Similarity=0.088 Sum_probs=41.7
Q ss_pred eEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECC-CCcEEEE
Q 046902 263 CLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLE-TNSLRTV 341 (393)
Q Consensus 263 ~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~-t~~~~~v 341 (393)
.+.+.+..+ ..+.||.++... ...|.....-... ....-+++.++|..|.....++.+..||.. .++|..+
T Consensus 229 ~~las~s~D-~~v~iw~~~~~~-~~~~~~~~~~~~~------~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~ 300 (316)
T 3bg1_A 229 STIASCSQD-GRVFIWTCDDAS-SNTWSPKLLHKFN------DVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCI 300 (316)
T ss_dssp CEEEEEETT-CEEEEEECSSTT-CCCCBCCEEEECS------SCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEE
T ss_pred ceEEEEcCC-CeEEEEEccCcc-ccchhhhhhhcCC------CcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEe
Confidence 444444444 499999987522 1234321101111 124456777888877777767778889876 4567766
Q ss_pred E
Q 046902 342 K 342 (393)
Q Consensus 342 ~ 342 (393)
.
T Consensus 301 ~ 301 (316)
T 3bg1_A 301 S 301 (316)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=87.71 E-value=16 Score=33.27 Aligned_cols=193 Identities=10% Similarity=0.035 Sum_probs=99.1
Q ss_pred eceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCC
Q 046902 100 NGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNS 179 (393)
Q Consensus 100 ~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~ 179 (393)
.+.|++.. ...+...++.+++...+.... ....++.+|+..+ +|+.... ....+..++..++.
T Consensus 87 ~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~--------~~~~gl~~d~~~~--~ly~~D~------~~~~I~r~~~~g~~ 149 (386)
T 3v65_B 87 EPVLLFAN-RIDIRQVLPHRSEYTLLLNNL--------ENAIALDFHHRRE--LVFWSDV------TLDRILRANLNGSN 149 (386)
T ss_dssp CCEEEEEC-BSCEEEECTTSCCCEEEECSC--------SCEEEEEEETTTT--EEEEEET------TTTEEEEEETTSCC
T ss_pred cceeEeec-CccceeeccCCCcEEEEecCC--------CccEEEEEecCCC--eEEEEeC------CCCcEEEEecCCCC
Confidence 45555553 345777777666554433221 2356788887655 3333221 23467777777665
Q ss_pred eEEccccCcccccccccccccccccCceeE-eCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEE
Q 046902 180 WRRISNLPRFLRDFYDYLYHSLFRKGYGVL-AGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVG 258 (393)
Q Consensus 180 W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~-~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~ 258 (393)
.+.+.... ......-.+- .+|.|||.-.. ...|.++|+....-..+. ..... . ...++
T Consensus 150 ~~~~~~~~------------~~~p~glavd~~~g~lY~~d~~---~~~I~~~~~dg~~~~~l~-~~~l~---~--P~gia 208 (386)
T 3v65_B 150 VEEVVSTG------------LESPGGLAVDWVHDKLYWTDSG---TSRIEVANLDGAHRKVLL-WQSLE---K--PRAIA 208 (386)
T ss_dssp EEEEECSS------------CSCCCCEEEETTTTEEEEEETT---TTEEEECBTTSCSCEEEE-CSSCS---C--EEEEE
T ss_pred cEEEEeCC------------CCCccEEEEEeCCCeEEEEcCC---CCeEEEEeCCCCceEEee-cCCCC---C--CcEEE
Confidence 55442111 1001111232 46899998543 458999998765433322 11111 1 12444
Q ss_pred Ee--CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc-CcEEEEEECCC
Q 046902 259 SL--EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REKLVWFDLET 335 (393)
Q Consensus 259 ~~--~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~l~~yd~~t 335 (393)
+. +|.||+..... .-.|++.+-.+. .. . .+.... .....-+++.++++.||+... ...+..+|+++
T Consensus 209 vdp~~g~ly~td~~~--~~~I~r~~~dG~-~~--~--~~~~~~----~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 209 LHPMEGTIYWTDWGN--TPRIEASSMDGS-GR--R--IIADTH----LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp EETTTTEEEEEECSS--SCEEEEEETTSC-SC--E--EEECSS----CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred EEcCCCeEEEeccCC--CCEEEEEeCCCC-Cc--E--EEEECC----CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 43 78888876433 245666664332 11 1 111111 112334556655667777653 34688888887
Q ss_pred CcEEEE
Q 046902 336 NSLRTV 341 (393)
Q Consensus 336 ~~~~~v 341 (393)
...+.+
T Consensus 278 ~~~~~~ 283 (386)
T 3v65_B 278 SHRKAV 283 (386)
T ss_dssp CSCEEE
T ss_pred CeeEEE
Confidence 655444
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=87.69 E-value=12 Score=31.60 Aligned_cols=185 Identities=15% Similarity=0.090 Sum_probs=97.5
Q ss_pred CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC-CCeEEccccC
Q 046902 109 VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT-NSWRRISNLP 187 (393)
Q Consensus 109 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t-~~W~~~~~~p 187 (393)
...++++|+.+++...+.... ....++.+.|..+ +-++ .. ...+.+++..+ +....+....
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~--------~~v~~~~~spdg~-~l~~--~~-------~~~i~~~d~~~~~~~~~~~~~~ 82 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTP--------ELFEAPNWSPDGK-YLLL--NS-------EGLLYRLSLAGDPSPEKVDTGF 82 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEES--------SCCEEEEECTTSS-EEEE--EE-------TTEEEEEESSSCCSCEECCCTT
T ss_pred ceeEEEEeCCCCceeeeccCC--------cceEeeEECCCCC-EEEE--Ec-------CCeEEEEeCCCCCCceEecccc
Confidence 457999999999877665433 1123455666543 2222 21 23788999988 7766553221
Q ss_pred cccccccccccccccccCceeEeCceEEEecc-CCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEe-CCeEE
Q 046902 188 RFLRDFYDYLYHSLFRKGYGVLAGGALHWVSP-KSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSL-EGCLC 265 (393)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~-~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~ 265 (393)
. ..........-+|....... .......|..+|+.+.....+...... ..+.-. +|+..
T Consensus 83 ~-----------~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~spdg~~l 143 (297)
T 2ojh_A 83 A-----------TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPS--------YWHGWSPDGKSF 143 (297)
T ss_dssp C-----------CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSE--------EEEEECTTSSEE
T ss_pred c-----------cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCc--------cceEECCCCCEE
Confidence 0 00011112223454333333 222346788889887665544332211 122222 56644
Q ss_pred E-EEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc-C--cEEEEEECCCCcEEEE
Q 046902 266 V-FRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-R--EKLVWFDLETNSLRTV 341 (393)
Q Consensus 266 ~-~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~--~~l~~yd~~t~~~~~v 341 (393)
+ ..... ..+.||.++..+ .... .+.... ....-+.+.++|..|++... + ..++.+++.+++.+.+
T Consensus 144 ~~~~~~~-~~~~l~~~~~~~--~~~~---~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 144 TYCGIRD-QVFDIYSMDIDS--GVET---RLTHGE-----GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp EEEEEET-TEEEEEEEETTT--CCEE---ECCCSS-----SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred EEEECCC-CceEEEEEECCC--Ccce---EcccCC-----CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence 4 44333 478999987532 2221 121110 12344566778887776653 2 3588888888777655
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.28 E-value=16 Score=32.68 Aligned_cols=203 Identities=10% Similarity=0.028 Sum_probs=95.1
Q ss_pred eEEEeeCCceEEEEeccccceeccCCCCC------CCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEe
Q 046902 102 LIALCNSVQELALFNPSTRKLKTLPLPPC------LVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSL 175 (393)
Q Consensus 102 Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~------~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss 175 (393)
+|+....+..+.|||..+++......... ............+.+.+..+.+-+. .. ....+.+|+.
T Consensus 58 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~-------~d~~i~iwd~ 129 (408)
T 4a11_B 58 YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS-SS-------FDKTLKVWDT 129 (408)
T ss_dssp EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE-EE-------TTSEEEEEET
T ss_pred EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE-Ee-------CCCeEEEeeC
Confidence 33333446678888888765443221100 0000122334566676644433222 22 2356888988
Q ss_pred CCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCcee
Q 046902 176 KTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVH 254 (393)
Q Consensus 176 ~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~ 254 (393)
.++.-...-..+... .... -.+..-++.+...+.. ...|..+|+.+..... +.... .. -
T Consensus 130 ~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~---~~~v~~~d~~~~~~~~~~~~~~------~~-v 189 (408)
T 4a11_B 130 NTLQTADVFNFEETV-------YSHH---MSPVSTKHCLVAVGTR---GPKVQLCDLKSGSCSHILQGHR------QE-I 189 (408)
T ss_dssp TTTEEEEEEECSSCE-------EEEE---ECSSCSSCCEEEEEES---SSSEEEEESSSSCCCEEECCCC------SC-E
T ss_pred CCCccceeccCCCce-------eeeE---eecCCCCCcEEEEEcC---CCeEEEEeCCCcceeeeecCCC------Cc-E
Confidence 876543322111000 0000 0000112333333332 3468889987654322 22111 11 1
Q ss_pred EEEEEe-CCe-EEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCC---------C-CCCCcceeeEEEEEeCCcEEEEE
Q 046902 255 VDVGSL-EGC-LCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEP---------T-PTRSFLFLRPLGYSRNGVKLLLE 322 (393)
Q Consensus 255 ~~l~~~-~G~-L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~---------~-~~~~~~~~~~~~~~~~g~~i~l~ 322 (393)
..+... +|. +.+.+..+. .+.+|-+.... ... ..+... . .........-+.+.++|..++..
T Consensus 190 ~~~~~~~~~~~ll~~~~~dg-~i~i~d~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 190 LAVSWSPRYDYILATASADS-RVKLWDVRRAS--GCL---ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp EEEEECSSCTTEEEEEETTS-CEEEEETTCSS--CCS---EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCCcEEEEEcCCC-cEEEEECCCCC--ccc---ccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence 123322 444 555555444 89999886422 111 111100 0 00111124456777788878877
Q ss_pred EcCcEEEEEECCCCcE
Q 046902 323 VRREKLVWFDLETNSL 338 (393)
Q Consensus 323 ~~~~~l~~yd~~t~~~ 338 (393)
..++.+..||+.+++.
T Consensus 264 ~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 264 GTDNRMRLWNSSNGEN 279 (408)
T ss_dssp ETTSCEEEEETTTCCB
T ss_pred cCCCeEEEEECCCCcc
Confidence 7777899999998653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=87.08 E-value=14 Score=32.03 Aligned_cols=190 Identities=9% Similarity=0.018 Sum_probs=93.2
Q ss_pred eEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCC-eEEcc--ccC
Q 046902 111 ELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNS-WRRIS--NLP 187 (393)
Q Consensus 111 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~-W~~~~--~~p 187 (393)
.+.++++.+++....-+.. ....++.++|..+ + ++..... ....+.+|+...+. -.... ..+
T Consensus 109 ~i~v~d~~~~~~~~~~~~~--------~~~~~~~~spdg~-~-l~~~~~~-----~~~~i~~~~~~~~g~~~~~~~~~~~ 173 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPIP--------YDAVGIAISPNGN-G-LILIDRS-----SANTVRRFKIDADGVLFDTGQEFIS 173 (331)
T ss_dssp EEEEEETTTTEEEEEEECC--------TTEEEEEECTTSS-C-EEEEEET-----TTTEEEEEEECTTCCEEEEEEEEEC
T ss_pred cEEEEECCCCCeEEEEECC--------CCccceEECCCCC-E-EEEEecC-----CCceEEEEEECCCCcEeecCCcccc
Confidence 7999999998765432211 1124677777654 3 3222210 12237778776432 11110 001
Q ss_pred cccccccccccccccccCceeEeCce-EEEeccCCCCCcEEEEEECCCcee----eeecCCCcccccCCceeEEEEE-eC
Q 046902 188 RFLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIVAFDLVAEEF----YQLPLPDSVNVSYANVHVDVGS-LE 261 (393)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~e~~----~~i~lP~~~~~~~~~~~~~l~~-~~ 261 (393)
. ......-.+.-+|. +|..... ...|..+|+.+.+. ..++...... .+.. -+
T Consensus 174 ----------~-~~~~~~~~~spdg~~l~v~~~~---~~~v~v~d~~~~~~~~~~~~~~~~~~~~--------~~~~spd 231 (331)
T 3u4y_A 174 ----------G-GTRPFNITFTPDGNFAFVANLI---GNSIGILETQNPENITLLNAVGTNNLPG--------TIVVSRD 231 (331)
T ss_dssp ----------S-SSSEEEEEECTTSSEEEEEETT---TTEEEEEECSSTTSCEEEEEEECSSCCC--------CEEECTT
T ss_pred ----------C-CCCccceEECCCCCEEEEEeCC---CCeEEEEECCCCcccceeeeccCCCCCc--------eEEECCC
Confidence 0 00001112223566 4444322 35799999987664 2233221111 1222 36
Q ss_pred CeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCC-CCC-CcceeeEEEEEeCCcEEEEEEcC-cEEEEEECCCCcE
Q 046902 262 GCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPT-PTR-SFLFLRPLGYSRNGVKLLLEVRR-EKLVWFDLETNSL 338 (393)
Q Consensus 262 G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~-~~~-~~~~~~~~~~~~~g~~i~l~~~~-~~l~~yd~~t~~~ 338 (393)
|+..++.......+.+|-++. .....+..+...- ..+ .......+++.++|..+++.... +.+..||++++..
T Consensus 232 g~~l~v~~~~~~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 232 GSTVYVLTESTVDVFNFNQLS----GTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp SSEEEEECSSEEEEEEEETTT----TEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred CCEEEEEEcCCCEEEEEECCC----CceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 664333333333566655432 2333344444220 001 11112346888899888887653 4799999999887
Q ss_pred EEE
Q 046902 339 RTV 341 (393)
Q Consensus 339 ~~v 341 (393)
..+
T Consensus 308 ~~~ 310 (331)
T 3u4y_A 308 GYV 310 (331)
T ss_dssp EEC
T ss_pred cce
Confidence 765
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=87.00 E-value=14 Score=31.76 Aligned_cols=197 Identities=12% Similarity=0.016 Sum_probs=95.5
Q ss_pred EeeeeeceEEEeeC-CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEe-ec----------
Q 046902 95 VLGSCNGLIALCNS-VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHF-KG---------- 162 (393)
Q Consensus 95 ~~~s~~GLl~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~-~~---------- 162 (393)
+.-+.+|-+++... ...+.++||.+++...+.... .... ......+.+|+... ++..... ..
T Consensus 74 l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~--~~~~-~~~~~~i~~d~~G~---l~vtd~~~g~~~~~~~~~~~ 147 (296)
T 3e5z_A 74 HCLNKQGHLIACSHGLRRLERQREPGGEWESIADSF--EGKK-LNSPNDVCLAPDGS---LWFSDPTYGIDKPEEGYGGE 147 (296)
T ss_dssp EEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEE--TTEE-CCCCCCEEECTTSC---EEEEECSHHHHCGGGSSCCC
T ss_pred eeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc--CCCC-CCCCCCEEECCCCC---EEEECCcccccccccccccc
Confidence 33345676665553 467999999999877664322 0000 01112355666432 2221100 00
Q ss_pred CCCCccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeE--eCceEEEeccCCCCCcEEEEEECC-Ccee-e
Q 046902 163 NDGDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVL--AGGALHWVSPKSSTRSVIVAFDLV-AEEF-Y 238 (393)
Q Consensus 163 ~~~~~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~il~fD~~-~e~~-~ 238 (393)
.+.....+..|+.. +.-+.+.... ....++. -+|.+++... ....|..||+. +.++ .
T Consensus 148 ~~~~~~~l~~~~~~-g~~~~~~~~~---------------~~~~gi~~s~dg~~lv~~~---~~~~i~~~~~~~~g~~~~ 208 (296)
T 3e5z_A 148 MELPGRWVFRLAPD-GTLSAPIRDR---------------VKPNGLAFLPSGNLLVSDT---GDNATHRYCLNARGETEY 208 (296)
T ss_dssp CCSSSCEEEEECTT-SCEEEEECCC---------------SSEEEEEECTTSCEEEEET---TTTEEEEEEECSSSCEEE
T ss_pred ccCCCcEEEEECCC-CCEEEeecCC---------------CCCccEEECCCCCEEEEeC---CCCeEEEEEECCCCcCcC
Confidence 00012245555544 4443332110 1112333 3577664432 23579999986 4444 1
Q ss_pred ---eecCCCcccccCCceeEEEEE-eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEE-E
Q 046902 239 ---QLPLPDSVNVSYANVHVDVGS-LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGY-S 313 (393)
Q Consensus 239 ---~i~lP~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~-~ 313 (393)
.+..... . ...++. .+|.|++.. . ..+.+|-.+ + . ....+..... ..-+++ .
T Consensus 209 ~~~~~~~~~~-----~--p~~i~~d~~G~l~v~~--~-~~v~~~~~~--g---~--~~~~~~~~~~------~~~~~f~~ 265 (296)
T 3e5z_A 209 QGVHFTVEPG-----K--TDGLRVDAGGLIWASA--G-DGVHVLTPD--G---D--ELGRVLTPQT------TSNLCFGG 265 (296)
T ss_dssp EEEEECCSSS-----C--CCSEEEBTTSCEEEEE--T-TEEEEECTT--S---C--EEEEEECSSC------CCEEEEES
T ss_pred CCeEeeCCCC-----C--CCeEEECCCCCEEEEc--C-CeEEEECCC--C---C--EEEEEECCCC------ceeEEEEC
Confidence 1211110 0 012333 488888877 2 356555432 2 2 2233333221 223445 3
Q ss_pred eCCcEEEEEEcCcEEEEEECCCCcEEE
Q 046902 314 RNGVKLLLEVRREKLVWFDLETNSLRT 340 (393)
Q Consensus 314 ~~g~~i~l~~~~~~l~~yd~~t~~~~~ 340 (393)
++++.|++...+ .++.+++++++++.
T Consensus 266 ~d~~~L~v~t~~-~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 266 PEGRTLYMTVST-EFWSIETNVRGLEH 291 (296)
T ss_dssp TTSCEEEEEETT-EEEEEECSCCBCCC
T ss_pred CCCCEEEEEcCC-eEEEEEcccccccc
Confidence 577778887764 69999999998764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=86.99 E-value=16 Score=32.59 Aligned_cols=118 Identities=12% Similarity=0.110 Sum_probs=60.5
Q ss_pred CceEEEeccCCCCCcEEEEEECCCcee-eeecCCCccc--------ccCCceeEEEEEe-CCeEEEEEEcCCCeEEEEEE
Q 046902 211 GGALHWVSPKSSTRSVIVAFDLVAEEF-YQLPLPDSVN--------VSYANVHVDVGSL-EGCLCVFRFYNLVYVDMWMM 280 (393)
Q Consensus 211 ~G~lyw~~~~~~~~~~il~fD~~~e~~-~~i~lP~~~~--------~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l 280 (393)
+|.+...+..+.....|..+|+.+.+. ..+..|.... . ... -..+.-. +|.+.+....+. .+.||-+
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-v~~~~~~~~~~~l~~~~~dg-~i~iwd~ 320 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSW-VMSLSFNDSGETLCSAGWDG-KLRFWDV 320 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSC-EEEEEECSSSSEEEEEETTS-EEEEEET
T ss_pred CCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc-CCc-EEEEEECCCCCEEEEEeCCC-eEEEEEc
Confidence 455444443311115799999876543 3344321100 0 111 1233332 566655555444 8999977
Q ss_pred eecCCCCCeEEEEEeeCCCCC-CC---------------cceeeEEEEEeCC----------cEEEEEEcCcEEEEEECC
Q 046902 281 KEHAVKESWTKLFSVQEPTPT-RS---------------FLFLRPLGYSRNG----------VKLLLEVRREKLVWFDLE 334 (393)
Q Consensus 281 ~~~~~~~~W~~~~~i~~~~~~-~~---------------~~~~~~~~~~~~g----------~~i~l~~~~~~l~~yd~~ 334 (393)
+. ...+..+...... .. .....-+.+.++| ..|+....++.+..||++
T Consensus 321 ~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 321 KT------KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TT------TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred CC------CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 53 3445555521000 00 1124456777776 567777777789999998
Q ss_pred CCc
Q 046902 335 TNS 337 (393)
Q Consensus 335 t~~ 337 (393)
+++
T Consensus 395 ~g~ 397 (397)
T 1sq9_A 395 GGK 397 (397)
T ss_dssp C--
T ss_pred CCC
Confidence 764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.94 E-value=15 Score=32.10 Aligned_cols=197 Identities=11% Similarity=0.067 Sum_probs=94.9
Q ss_pred eEEEeeCCceEEEEeccccc--eeccCCCCCCCCCCCCceEEEEeeeCC-CCCeEEEEEEEeecCCCCccEEEEEEeCCC
Q 046902 102 LIALCNSVQELALFNPSTRK--LKTLPLPPCLVGFPSAFTFYGFGQDKI-NDDYKLVRVLHFKGNDGDDVEVEVYSLKTN 178 (393)
Q Consensus 102 Ll~~~~~~~~~~V~NP~T~~--~~~LP~~~~~~~~~~~~~~~~~g~d~~-~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~ 178 (393)
+|+....+..+.|||..+++ ...+.... .. .......+.+.+. +.+-+.+.... ....+.+|+.+++
T Consensus 131 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~--~~--~~~~v~~~~~~~~~~~~~~~l~~~~------~d~~i~i~d~~~~ 200 (357)
T 3i2n_A 131 EIVTGSRDGTVKVWDPRQKDDPVANMEPVQ--GE--NKRDCWTVAFGNAYNQEERVVCAGY------DNGDIKLFDLRNM 200 (357)
T ss_dssp EEEEEETTSCEEEECTTSCSSCSEEECCCT--TS--CCCCEEEEEEECCCC-CCCEEEEEE------TTSEEEEEETTTT
T ss_pred EEEEEeCCCeEEEEeCCCCCCcceeccccC--CC--CCCceEEEEEEeccCCCCCEEEEEc------cCCeEEEEECccC
Confidence 44444456789999998875 33333222 10 0112233332221 11112233222 2357889998876
Q ss_pred CeEEccccCcccccccccccccccccCceeEe-----CceEEEeccCCCCCcEEEEEECCCceeee-ec---CCCccccc
Q 046902 179 SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA-----GGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LP---LPDSVNVS 249 (393)
Q Consensus 179 ~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~-----~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~---lP~~~~~~ 249 (393)
.=....... ....++.. +|.....+.. ...|..+|+.+..... +. +....
T Consensus 201 ~~~~~~~~~---------------~~v~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~--- 259 (357)
T 3i2n_A 201 ALRWETNIK---------------NGVCSLEFDRKDISMNKLVATSL---EGKFHVFDMRTQHPTKGFASVSEKAHK--- 259 (357)
T ss_dssp EEEEEEECS---------------SCEEEEEESCSSSSCCEEEEEES---TTEEEEEEEEEEETTTEEEEEEEECCS---
T ss_pred ceeeecCCC---------------CceEEEEcCCCCCCCCEEEEECC---CCeEEEEeCcCCCcccceeeeccCCCc---
Confidence 532221111 01111222 4454444433 3578888887643211 11 11111
Q ss_pred CCceeEEEEEe-CCe-EEEEEEcCCCeEEEEEEeecCC-------------CCCeEEEEEeeCCCCCCCcceeeEEEEEe
Q 046902 250 YANVHVDVGSL-EGC-LCVFRFYNLVYVDMWMMKEHAV-------------KESWTKLFSVQEPTPTRSFLFLRPLGYSR 314 (393)
Q Consensus 250 ~~~~~~~l~~~-~G~-L~~~~~~~~~~~~iW~l~~~~~-------------~~~W~~~~~i~~~~~~~~~~~~~~~~~~~ 314 (393)
.. -..+.-. +|. +.+.... +..+.||.++.... ...+..+..+.... ....-+++.+
T Consensus 260 -~~-v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~v~~~~~s~ 331 (357)
T 3i2n_A 260 -ST-VWQVRHLPQNRELFLTAGG-AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST-----QPISSLDWSP 331 (357)
T ss_dssp -SC-EEEEEEETTEEEEEEEEET-TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS-----SCEEEEEECS
T ss_pred -CC-EEEEEECCCCCcEEEEEeC-CCcEEEeecCCCcccccccCCCCccccccccceeeccccCC-----CCeeEEEEcC
Confidence 11 1133333 566 4444444 44999999985321 12355565555321 1234567778
Q ss_pred CCcEEEE-EEcCcEEEEEECCCCc
Q 046902 315 NGVKLLL-EVRREKLVWFDLETNS 337 (393)
Q Consensus 315 ~g~~i~l-~~~~~~l~~yd~~t~~ 337 (393)
+|..+++ ...++.+..||+.+.+
T Consensus 332 ~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 332 DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCeEEEEecCCCcEEEEECCCcc
Confidence 8877764 5556789999988643
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.86 E-value=14 Score=33.19 Aligned_cols=200 Identities=9% Similarity=-0.021 Sum_probs=95.7
Q ss_pred ceEEEeeCCceEEEEeccccc------eeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEE
Q 046902 101 GLIALCNSVQELALFNPSTRK------LKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYS 174 (393)
Q Consensus 101 GLl~~~~~~~~~~V~NP~T~~------~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vys 174 (393)
.+|+....+..+.|||..+++ ........ .........+.+.+..+.+ ++... ....+.+|+
T Consensus 127 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~-l~~~~-------~dg~v~iwd 194 (416)
T 2pm9_A 127 NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS----MSSVDEVISLAWNQSLAHV-FASAG-------SSNFASIWD 194 (416)
T ss_dssp TBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS----CCSSCCCCEEEECSSCTTE-EEEES-------SSSCEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCccccccccccccccc----cCCCCCeeEEEeCCCCCcE-EEEEc-------CCCCEEEEE
Confidence 345444456789999998876 22211110 0111223345566553333 22221 234588899
Q ss_pred eCCCCeEEccccCcccccccccccccccccCceeEe--Cc-eEEEeccCCCCCcEEEEEECCCceeeeecCC-CcccccC
Q 046902 175 LKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA--GG-ALHWVSPKSSTRSVIVAFDLVAEEFYQLPLP-DSVNVSY 250 (393)
Q Consensus 175 s~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G-~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP-~~~~~~~ 250 (393)
.+++.-...-..... ..........+.+ +| .+...+..+.....|..+|+.+..-....+. ...
T Consensus 195 ~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~---- 262 (416)
T 2pm9_A 195 LKAKKEVIHLSYTSP--------NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQ---- 262 (416)
T ss_dssp TTTTEEEEEECCCCC--------SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCS----
T ss_pred CCCCCcceEEecccc--------ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCcc----
Confidence 887654322111100 0000001111222 23 3343333311112688889887432111121 111
Q ss_pred CceeEEEEEe--CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCC-cEEEEEEcCcE
Q 046902 251 ANVHVDVGSL--EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNG-VKLLLEVRREK 327 (393)
Q Consensus 251 ~~~~~~l~~~--~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g-~~i~l~~~~~~ 327 (393)
.. -..+.-. +|.+.+....+. .+.||-++. ...+..+.... ....-+.+.+++ ..++....++.
T Consensus 263 ~~-v~~~~~s~~~~~~l~s~~~dg-~v~~wd~~~------~~~~~~~~~~~-----~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 263 KG-ILSLDWCHQDEHLLLSSGRDN-TVLLWNPES------AEQLSQFPARG-----NWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp SC-EEEEEECSSCSSCEEEEESSS-EEEEECSSS------CCEEEEEECSS-----SCCCCEEECTTCTTEEEECCSSSE
T ss_pred Cc-eeEEEeCCCCCCeEEEEeCCC-CEEEeeCCC------CccceeecCCC-----CceEEEEECCCCCCEEEEEecCCc
Confidence 11 1233332 677766666544 899998764 12344444211 123346777777 56666666678
Q ss_pred EEEEECCCCc
Q 046902 328 LVWFDLETNS 337 (393)
Q Consensus 328 l~~yd~~t~~ 337 (393)
+..||+.+.+
T Consensus 330 i~iw~~~~~~ 339 (416)
T 2pm9_A 330 IEVQTLQNLT 339 (416)
T ss_dssp EEEEESCCCC
T ss_pred EEEEEccCCC
Confidence 9999998865
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=86.58 E-value=17 Score=32.47 Aligned_cols=111 Identities=9% Similarity=0.032 Sum_probs=58.7
Q ss_pred eeceEEEeeCCceEEEEeccccceeccCCCCCCCCC---CCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEe
Q 046902 99 CNGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGF---PSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSL 175 (393)
Q Consensus 99 ~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~---~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss 175 (393)
.+|.|.+......++.+|+.|++.+.--........ ...........+. =+|+... ....+..++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~v~~-------~~g~l~a~d~ 120 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSG----GHVYIGS-------EKAQVYALNT 120 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEET----TEEEEEE-------TTSEEEEEET
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeC----CEEEEEc-------CCCEEEEEEC
Confidence 467777765566789999998875421111100000 0111112222221 1333322 2346788888
Q ss_pred CCC--CeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCce--eee
Q 046902 176 KTN--SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEE--FYQ 239 (393)
Q Consensus 176 ~t~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~--~~~ 239 (393)
.++ .|+.-..-. ....++..+|.+|..... ..|.+||..+.+ |+.
T Consensus 121 ~tG~~~W~~~~~~~---------------~~~~p~~~~~~v~v~~~~----g~l~~~d~~tG~~~W~~ 169 (376)
T 3q7m_A 121 SDGTVAWQTKVAGE---------------ALSRPVVSDGLVLIHTSN----GQLQALNEADGAVKWTV 169 (376)
T ss_dssp TTCCEEEEEECSSC---------------CCSCCEEETTEEEEECTT----SEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEeCCCc---------------eEcCCEEECCEEEEEcCC----CeEEEEECCCCcEEEEE
Confidence 776 476532111 123356778888876543 589999997654 554
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=86.45 E-value=1.5 Score=39.56 Aligned_cols=141 Identities=12% Similarity=0.069 Sum_probs=68.6
Q ss_pred cEEEEEEeCCCCeEEccccCcccccccccccccccccCceeE--eCceEEEeccCCCCCcEEEEEECCCce-eeee-cCC
Q 046902 168 VEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVL--AGGALHWVSPKSSTRSVIVAFDLVAEE-FYQL-PLP 243 (393)
Q Consensus 168 ~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~il~fD~~~e~-~~~i-~lP 243 (393)
..+.+|+..++.|+.+..+.. +.. .-..+. -+|.+...+.. ...|..+|+.+.. +... .+.
T Consensus 33 ~~i~iw~~~~~~~~~~~~~~~----------h~~--~v~~~~~s~~~~~l~s~s~---d~~v~vwd~~~~~~~~~~~~~~ 97 (377)
T 3dwl_C 33 NQVELYEQDGNGWKHARTFSD----------HDK--IVTCVDWAPKSNRIVTCSQ---DRNAYVYEKRPDGTWKQTLVLL 97 (377)
T ss_dssp SCBCEEEEETTEEEECCCBCC----------CSS--CEEEEEECTTTCCEEEEET---TSSEEEC------CCCCEEECC
T ss_pred CEEEEEEccCCceEEEEEEec----------CCc--eEEEEEEeCCCCEEEEEeC---CCeEEEEEcCCCCceeeeeEec
Confidence 457788888888877655431 110 111121 23433333222 2468888888776 3332 121
Q ss_pred CcccccCCceeEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEE
Q 046902 244 DSVNVSYANVHVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLE 322 (393)
Q Consensus 244 ~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~ 322 (393)
... ... ..+.-. +|.+.+.+..+. .+.||-++. ...|.....+.... .....-+.+.++|..++..
T Consensus 98 ~~~----~~v-~~~~~~~~~~~l~~~~~d~-~i~iwd~~~---~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 98 RLN----RAA-TFVRWSPNEDKFAVGSGAR-VISVCYFEQ---ENDWWVSKHLKRPL----RSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp CCS----SCE-EEEECCTTSSCCEEEESSS-CEEECCC--------CCCCEEECSSC----CSCEEEEEECTTSSEEEEE
T ss_pred ccC----Cce-EEEEECCCCCEEEEEecCC-eEEEEEECC---cccceeeeEeeccc----CCCeEEEEEcCCCCEEEEE
Confidence 111 111 122222 666666655544 899998875 23455555554311 1124456777788877777
Q ss_pred EcCcEEEEEECCCC
Q 046902 323 VRREKLVWFDLETN 336 (393)
Q Consensus 323 ~~~~~l~~yd~~t~ 336 (393)
..++.+..||++++
T Consensus 165 ~~d~~i~iwd~~~~ 178 (377)
T 3dwl_C 165 CADRKAYVLSAYVR 178 (377)
T ss_dssp ESSSCEEEEEECCS
T ss_pred eCCCEEEEEEEEec
Confidence 77777999998643
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=86.30 E-value=14 Score=31.23 Aligned_cols=161 Identities=10% Similarity=0.056 Sum_probs=83.0
Q ss_pred EEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEe---CceEEE
Q 046902 140 FYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA---GGALHW 216 (393)
Q Consensus 140 ~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~---~G~lyw 216 (393)
..++.+|+..+. ++.... ....+.+|+..++.-+.+.... . ....++.+ +|.+||
T Consensus 38 ~~gi~~d~~~~~--ly~~d~------~~~~I~~~~~~g~~~~~~~~~~------------~--~~p~~ia~d~~~~~lyv 95 (267)
T 1npe_A 38 IIGLAFDCVDKV--VYWTDI------SEPSIGRASLHGGEPTTIIRQD------------L--GSPEGIALDHLGRTIFW 95 (267)
T ss_dssp EEEEEEETTTTE--EEEEET------TTTEEEEEESSSCCCEEEECTT------------C--CCEEEEEEETTTTEEEE
T ss_pred EEEEEEecCCCE--EEEEEC------CCCEEEEEecCCCCcEEEEECC------------C--CCccEEEEEecCCeEEE
Confidence 467888876543 333221 2346788887665322221100 0 11223433 589999
Q ss_pred eccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEe--CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEE
Q 046902 217 VSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSL--EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFS 294 (393)
Q Consensus 217 ~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~--~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~ 294 (393)
.... ...|..+|+....-..+ .+.... .. ..++.. +|.||+...... .-.|+++.-++. -.+.
T Consensus 96 ~d~~---~~~I~~~~~~g~~~~~~-~~~~~~---~P--~~i~vd~~~g~lyv~~~~~~-~~~I~~~~~dg~---~~~~-- 160 (267)
T 1npe_A 96 TDSQ---LDRIEVAKMDGTQRRVL-FDTGLV---NP--RGIVTDPVRGNLYWTDWNRD-NPKIETSHMDGT---NRRI-- 160 (267)
T ss_dssp EETT---TTEEEEEETTSCSCEEE-ECSSCS---SE--EEEEEETTTTEEEEEECCSS-SCEEEEEETTSC---CCEE--
T ss_pred EECC---CCEEEEEEcCCCCEEEE-EECCCC---Cc--cEEEEeeCCCEEEEEECCCC-CcEEEEEecCCC---CcEE--
Confidence 8543 46899999875443333 122211 11 234443 688888875421 223444443231 1111
Q ss_pred eeCCCCCCCcceeeEEEEEeCCcEEEEEEcC-cEEEEEECCCCcEEEE
Q 046902 295 VQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR-EKLVWFDLETNSLRTV 341 (393)
Q Consensus 295 i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-~~l~~yd~~t~~~~~v 341 (393)
+.... .....-+++.++++.||+.... ..+..+|++++..+.+
T Consensus 161 ~~~~~----~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 204 (267)
T 1npe_A 161 LAQDN----LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV 204 (267)
T ss_dssp EECTT----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred EEECC----CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE
Confidence 11111 1123445666667788887643 5799999998665544
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=86.10 E-value=18 Score=32.25 Aligned_cols=189 Identities=7% Similarity=-0.041 Sum_probs=90.4
Q ss_pred eeeceEEEe-eCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeC
Q 046902 98 SCNGLIALC-NSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLK 176 (393)
Q Consensus 98 s~~GLl~~~-~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~ 176 (393)
+.+|-.++. ..+..+.|||..+++....-... ......+.+.+..+.+ ++... ....+.+|+.+
T Consensus 148 spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h-------~~~v~~v~~s~~~~~~-~~s~~-------~dg~v~~wd~~ 212 (357)
T 4g56_B 148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH-------SSEVNCVAACPGKDTI-FLSCG-------EDGRILLWDTR 212 (357)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTTEEEEEECCC-------SSCEEEEEECTTCSSC-EEEEE-------TTSCEEECCTT
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-------CCCEEEEEEccCCCce-eeeec-------cCCceEEEECC
Confidence 445644443 35667999999988755422211 1123345555544333 22222 23357788877
Q ss_pred CCCeEEccccCcccccccccccccccccCceeEe---CceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCc
Q 046902 177 TNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA---GGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYAN 252 (393)
Q Consensus 177 t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~ 252 (393)
++.-....... .......++.. ++.+...+.. ...|..+|+.+.+... +..... .
T Consensus 213 ~~~~~~~~~~~------------~~~~~v~~v~~sp~~~~~la~g~~---d~~i~~wd~~~~~~~~~~~~~~~------~ 271 (357)
T 4g56_B 213 KPKPATRIDFC------------ASDTIPTSVTWHPEKDDTFACGDE---TGNVSLVNIKNPDSAQTSAVHSQ------N 271 (357)
T ss_dssp SSSCBCBCCCT------------TCCSCEEEEEECTTSTTEEEEEES---SSCEEEEESSCGGGCEEECCCSS------C
T ss_pred CCceeeeeeec------------cccccccchhhhhcccceEEEeec---ccceeEEECCCCcEeEEEeccce------e
Confidence 66432111110 00011112222 2333333322 3468889987754322 222211 1
Q ss_pred eeEEEEEe-CC-eEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEe-CCcEEEEEEcCcEEE
Q 046902 253 VHVDVGSL-EG-CLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSR-NGVKLLLEVRREKLV 329 (393)
Q Consensus 253 ~~~~l~~~-~G-~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~-~g~~i~l~~~~~~l~ 329 (393)
-..+.-. +| .+.+.+.. +..+.||-++. -..+..+... ....-+++++ ++..|+-...++.+.
T Consensus 272 -v~~l~~sp~~~~~lasgs~-D~~i~iwd~~~------~~~~~~~~H~------~~V~~vafsP~d~~~l~s~s~Dg~v~ 337 (357)
T 4g56_B 272 -ITGLAYSYHSSPFLASISE-DCTVAVLDADF------SEVFRDLSHR------DFVTGVAWSPLDHSKFTTVGWDHKVL 337 (357)
T ss_dssp -EEEEEECSSSSCCEEEEET-TSCEEEECTTS------CEEEEECCCS------SCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred -EEEEEEcCCCCCEEEEEeC-CCEEEEEECCC------CcEeEECCCC------CCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence 1133332 45 44444443 44899996542 1233333221 1244567776 677666566667799
Q ss_pred EEECCCC
Q 046902 330 WFDLETN 336 (393)
Q Consensus 330 ~yd~~t~ 336 (393)
.||+.++
T Consensus 338 iW~~~~~ 344 (357)
T 4g56_B 338 HHHLPSE 344 (357)
T ss_dssp EEECC--
T ss_pred EEECCCC
Confidence 9998764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=86.03 E-value=16 Score=31.42 Aligned_cols=197 Identities=9% Similarity=-0.029 Sum_probs=103.4
Q ss_pred eEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeE
Q 046902 102 LIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWR 181 (393)
Q Consensus 102 Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~ 181 (393)
|+........++++||.++ ...+..+. ....++.+++... +++... ....+.+|+..++..+
T Consensus 42 l~~~~~~~~~i~~~~~~~~-~~~~~~~~--------~~~~~l~~~~dg~---l~v~~~------~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ-LSPEMHPS--------HHQNGHCLNKQGH---LIACSH------GLRRLERQREPGGEWE 103 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC-EEEEESSC--------SSEEEEEECTTCC---EEEEET------TTTEEEEECSTTCCEE
T ss_pred EEEEeCCCCEEEEEECCCC-eEEEECCC--------CCcceeeECCCCc---EEEEec------CCCeEEEEcCCCCcEE
Confidence 4444434568999999998 55554322 1235677777543 332221 2356888998888877
Q ss_pred EccccCcccccccccccccccccCceeEeCceEEEec----c----------CCCCCcEEEEEECCCceeeeecCCCccc
Q 046902 182 RISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVS----P----------KSSTRSVIVAFDLVAEEFYQLPLPDSVN 247 (393)
Q Consensus 182 ~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~----~----------~~~~~~~il~fD~~~e~~~~i~lP~~~~ 247 (393)
.+...... ........-.+.-+|.+|+.. . .......|..+|.. .+...+.-...
T Consensus 104 ~~~~~~~~--------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~-- 172 (296)
T 3e5z_A 104 SIADSFEG--------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV-- 172 (296)
T ss_dssp EEECEETT--------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS--
T ss_pred EEeeccCC--------CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC--
Confidence 65321100 000001111223468877641 1 00112479999987 55544421111
Q ss_pred ccCCceeEEEEE-eCCeEEEEEEcCCCeEEEEEEeecCCCCCe-EEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC
Q 046902 248 VSYANVHVDVGS-LEGCLCVFRFYNLVYVDMWMMKEHAVKESW-TKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR 325 (393)
Q Consensus 248 ~~~~~~~~~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W-~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~ 325 (393)
. ...++. -+|++. +.......+.+|.++.. ... .....+.. . .....-+++.++|. |++.. .
T Consensus 173 ---~--~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~---g~~~~~~~~~~~-~----~~~p~~i~~d~~G~-l~v~~-~ 236 (296)
T 3e5z_A 173 ---K--PNGLAFLPSGNLL-VSDTGDNATHRYCLNAR---GETEYQGVHFTV-E----PGKTDGLRVDAGGL-IWASA-G 236 (296)
T ss_dssp ---S--EEEEEECTTSCEE-EEETTTTEEEEEEECSS---SCEEEEEEEECC-S----SSCCCSEEEBTTSC-EEEEE-T
T ss_pred ---C--CccEEECCCCCEE-EEeCCCCeEEEEEECCC---CcCcCCCeEeeC-C----CCCCCeEEECCCCC-EEEEc-C
Confidence 0 112333 367766 44444447777777632 334 22233311 1 01123466777876 66666 5
Q ss_pred cEEEEEECCCCcEEEEEE
Q 046902 326 EKLVWFDLETNSLRTVKI 343 (393)
Q Consensus 326 ~~l~~yd~~t~~~~~v~~ 343 (393)
..+..||++++.+..+..
T Consensus 237 ~~v~~~~~~g~~~~~~~~ 254 (296)
T 3e5z_A 237 DGVHVLTPDGDELGRVLT 254 (296)
T ss_dssp TEEEEECTTSCEEEEEEC
T ss_pred CeEEEECCCCCEEEEEEC
Confidence 679999999887777755
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=85.95 E-value=15 Score=31.21 Aligned_cols=190 Identities=11% Similarity=0.131 Sum_probs=96.6
Q ss_pred eeeceEEEeeC--CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEe
Q 046902 98 SCNGLIALCNS--VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSL 175 (393)
Q Consensus 98 s~~GLl~~~~~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss 175 (393)
..+|.|.+... ...+.++|+..+....+.... .....++.+|+... ++.... ....+.+|+.
T Consensus 86 ~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~-------~~~~~~i~~~~~g~---l~v~~~------~~~~i~~~~~ 149 (286)
T 1q7f_A 86 RNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATI-------LQHPRGVTVDNKGR---IIVVEC------KVMRVIIFDQ 149 (286)
T ss_dssp TTTTEEEEEECGGGCEEEEECTTSCEEEEECTTT-------CSCEEEEEECTTSC---EEEEET------TTTEEEEECT
T ss_pred cCCCeEEEEcCCCCCEEEEECCCCcEEEEecCcc-------CCCceEEEEeCCCC---EEEEEC------CCCEEEEEcC
Confidence 35777766653 567999996555444443322 12235677777542 332221 2346777876
Q ss_pred CCCCeEEccccCcccccccccccccccccCceeEe--CceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCce
Q 046902 176 KTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA--GGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANV 253 (393)
Q Consensus 176 ~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~ 253 (393)
....-+.+.... .. ....++.+ +|.+|..... ...|..||...+....+..+.... .
T Consensus 150 ~g~~~~~~~~~~-----------~~--~~p~~i~~~~~g~l~v~~~~---~~~i~~~~~~g~~~~~~~~~g~~~---~-- 208 (286)
T 1q7f_A 150 NGNVLHKFGCSK-----------HL--EFPNGVVVNDKQEIFISDNR---AHCVKVFNYEGQYLRQIGGEGITN---Y-- 208 (286)
T ss_dssp TSCEEEEEECTT-----------TC--SSEEEEEECSSSEEEEEEGG---GTEEEEEETTCCEEEEESCTTTSC---S--
T ss_pred CCCEEEEeCCCC-----------cc--CCcEEEEECCCCCEEEEECC---CCEEEEEcCCCCEEEEEccCCccC---C--
Confidence 543333321101 00 11223433 5787765432 358999998776666554432111 1
Q ss_pred eEEEEE-eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEE
Q 046902 254 HVDVGS-LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFD 332 (393)
Q Consensus 254 ~~~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd 332 (393)
...++. -+|.|++........+.+|-. . ..-. ..+..... .....-+++.++|. +++...+..+..|+
T Consensus 209 p~~i~~d~~G~l~v~~~~~~~~i~~~~~--~---g~~~--~~~~~~~~---~~~~~~i~~~~~g~-l~vs~~~~~v~v~~ 277 (286)
T 1q7f_A 209 PIGVGINSNGEILIADNHNNFNLTIFTQ--D---GQLI--SALESKVK---HAQCFDVALMDDGS-VVLASKDYRLYIYR 277 (286)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECT--T---SCEE--EEEEESSC---CSCEEEEEEETTTE-EEEEETTTEEEEEE
T ss_pred CcEEEECCCCCEEEEeCCCCEEEEEECC--C---CCEE--EEEcccCC---CCcceeEEECCCCc-EEEECCCCeEEEEE
Confidence 123444 378888877543226777742 1 2222 22222110 01123466677774 66665566788887
Q ss_pred CCC
Q 046902 333 LET 335 (393)
Q Consensus 333 ~~t 335 (393)
...
T Consensus 278 ~~~ 280 (286)
T 1q7f_A 278 YVQ 280 (286)
T ss_dssp CSC
T ss_pred ccc
Confidence 754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=85.89 E-value=16 Score=31.48 Aligned_cols=189 Identities=14% Similarity=0.146 Sum_probs=95.8
Q ss_pred EEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEE
Q 046902 103 IALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRR 182 (393)
Q Consensus 103 l~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~ 182 (393)
|+....+..+.||+..+++....-... ......+.+.|..+ .++... ....+.+|+.+++.-..
T Consensus 38 l~s~~~dg~i~iw~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~--~l~s~~-------~d~~i~vwd~~~~~~~~ 101 (312)
T 4ery_A 38 LASSSADKLIKIWGAYDGKFEKTISGH-------KLGISDVAWSSDSN--LLVSAS-------DDKTLKIWDVSSGKCLK 101 (312)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCC-------SSCEEEEEECTTSS--EEEEEE-------TTSEEEEEETTTCCEEE
T ss_pred EEEeeCCCeEEEEeCCCcccchhhccC-------CCceEEEEEcCCCC--EEEEEC-------CCCEEEEEECCCCcEEE
Confidence 333334567889998887755432211 22344566666432 222222 24578899988764221
Q ss_pred ccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCceeEEEEE-e
Q 046902 183 ISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVDVGS-L 260 (393)
Q Consensus 183 ~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~l~~-~ 260 (393)
. +. .+......-...-+|.+...+.. ...|..+|+.+.+... +..... .. ..+.- -
T Consensus 102 ~--~~----------~~~~~v~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~------~v-~~~~~~~ 159 (312)
T 4ery_A 102 T--LK----------GHSNYVFCCNFNPQSNLIVSGSF---DESVRIWDVKTGKCLKTLPAHSD------PV-SAVHFNR 159 (312)
T ss_dssp E--EE----------CCSSCEEEEEECSSSSEEEEEET---TSCEEEEETTTCCEEEEECCCSS------CE-EEEEECT
T ss_pred E--Ec----------CCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCEEEEEecCCCC------cE-EEEEEcC
Confidence 1 11 00000000001112333322222 3568899988765432 222111 11 12222 3
Q ss_pred CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEE
Q 046902 261 EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRT 340 (393)
Q Consensus 261 ~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~ 340 (393)
+|.+.+....+. .+.+|-+.. . .....+.... .....-+.+.++|..++....++.+..||+.+.+...
T Consensus 160 ~~~~l~~~~~d~-~i~~wd~~~----~--~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 228 (312)
T 4ery_A 160 DGSLIVSSSYDG-LCRIWDTAS----G--QCLKTLIDDD----NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 228 (312)
T ss_dssp TSSEEEEEETTS-CEEEEETTT----C--CEEEEECCSS----CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCCEEEEEeCCC-cEEEEECCC----C--ceeeEEeccC----CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 677666665544 899998763 1 1222222111 1123446777888888887777789999999987543
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=85.82 E-value=20 Score=32.38 Aligned_cols=101 Identities=11% Similarity=0.129 Sum_probs=53.5
Q ss_pred cEEEEEECCCcee--eeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCC-CCC
Q 046902 225 SVIVAFDLVAEEF--YQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEP-TPT 301 (393)
Q Consensus 225 ~~il~fD~~~e~~--~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~-~~~ 301 (393)
..|..+|+.+... ..+..... .. ...+...+|.+.+.... +..+.||.+...+.. ... ..+... ...
T Consensus 313 g~i~vwd~~~~~~~~~~~~~~~~-----~~-v~~~~~~~~~~l~s~~~-d~~v~iw~~~~~~~~--~~~-~~~~~~~~~~ 382 (420)
T 3vl1_A 313 GMLAQWDLRSPECPVGEFLINEG-----TP-INNVYFAAGALFVSSGF-DTSIKLDIISDPESE--RPA-IEFETPTFLV 382 (420)
T ss_dssp SEEEEEETTCTTSCSEEEEESTT-----SC-EEEEEEETTEEEEEETT-TEEEEEEEECCTTCC--SCE-ECTTSCEEEC
T ss_pred CeEEEEEcCCCcCchhhhhccCC-----CC-ceEEEeCCCCEEEEecC-CccEEEEeccCCCCC--ccc-eeccCccEEc
Confidence 5799999987542 22322111 11 12334457775555544 449999999863211 111 101100 000
Q ss_pred CCcceeeEEEEEeCCc---EEEEEEcCcEEEEEECCC
Q 046902 302 RSFLFLRPLGYSRNGV---KLLLEVRREKLVWFDLET 335 (393)
Q Consensus 302 ~~~~~~~~~~~~~~g~---~i~l~~~~~~l~~yd~~t 335 (393)
.......-+++.++|. .++.....+.+..|+++.
T Consensus 383 ~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 383 SNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 1111244567777776 677766667788899875
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=85.17 E-value=21 Score=32.20 Aligned_cols=202 Identities=15% Similarity=0.130 Sum_probs=97.6
Q ss_pred eeece-EEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeC
Q 046902 98 SCNGL-IALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLK 176 (393)
Q Consensus 98 s~~GL-l~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~ 176 (393)
+.+|- |+....+..+.|||..+++....-... ......+.+.|... .++... ....+.+|+.+
T Consensus 132 s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-------~~~v~~~~~~p~~~--~l~s~s-------~d~~v~iwd~~ 195 (393)
T 1erj_A 132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGH-------EQDIYSLDYFPSGD--KLVSGS-------GDRTVRIWDLR 195 (393)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-------SSCEEEEEECTTSS--EEEEEE-------TTSEEEEEETT
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC-------CCCEEEEEEcCCCC--EEEEec-------CCCcEEEEECC
Confidence 33553 444445678999999988755432211 22345566766543 233322 24578899988
Q ss_pred CCCeEEccccCcccccccccccccccccCceeEe---CceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCc
Q 046902 177 TNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA---GGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYAN 252 (393)
Q Consensus 177 t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~ 252 (393)
++.-...-... .....+.+ +|.+...+.. ...|..+|+.+..... +..+.........
T Consensus 196 ~~~~~~~~~~~---------------~~v~~~~~~~~~~~~l~~~s~---d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~ 257 (393)
T 1erj_A 196 TGQCSLTLSIE---------------DGVTTVAVSPGDGKYIAAGSL---DRAVRVWDSETGFLVERLDSENESGTGHKD 257 (393)
T ss_dssp TTEEEEEEECS---------------SCEEEEEECSTTCCEEEEEET---TSCEEEEETTTCCEEEEEC------CCCSS
T ss_pred CCeeEEEEEcC---------------CCcEEEEEECCCCCEEEEEcC---CCcEEEEECCCCcEEEeecccccCCCCCCC
Confidence 77543221111 00011111 4544444332 3468889988765432 3222111000011
Q ss_pred eeEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCC------CeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC
Q 046902 253 VHVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKE------SWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR 325 (393)
Q Consensus 253 ~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~------~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~ 325 (393)
.-..+.-. +|.+.+....+. .+.||-++...... .......+.- ......-+++.+++..|+-...+
T Consensus 258 ~v~~v~~~~~g~~l~s~s~d~-~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~sgs~D 331 (393)
T 1erj_A 258 SVYSVVFTRDGQSVVSGSLDR-SVKLWNLQNANNKSDSKTPNSGTCEVTYIG-----HKDFVLSVATTQNDEYILSGSKD 331 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTS-EEEEEEC---------------CEEEEEEC-----CSSCEEEEEECGGGCEEEEEETT
T ss_pred CEEEEEECCCCCEEEEEeCCC-EEEEEECCCCCCcccccCCCCCcceEEEec-----ccCcEEEEEECCCCCEEEEEeCC
Confidence 11133332 666655555444 99999887532100 0011111111 01123345666777777767777
Q ss_pred cEEEEEECCCCcEE
Q 046902 326 EKLVWFDLETNSLR 339 (393)
Q Consensus 326 ~~l~~yd~~t~~~~ 339 (393)
+.+..||+++++..
T Consensus 332 ~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 332 RGVLFWDKKSGNPL 345 (393)
T ss_dssp SEEEEEETTTCCEE
T ss_pred CeEEEEECCCCeEE
Confidence 78999999988754
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=84.61 E-value=31 Score=33.60 Aligned_cols=196 Identities=12% Similarity=-0.017 Sum_probs=99.9
Q ss_pred ceEEEEeccc------cceeccC-CCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCC-CccEEEEEEeC-CCCe
Q 046902 110 QELALFNPST------RKLKTLP-LPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDG-DDVEVEVYSLK-TNSW 180 (393)
Q Consensus 110 ~~~~V~NP~T------~~~~~LP-~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~-~~~~~~Vyss~-t~~W 180 (393)
..++++|..+ ++...|. ... .....+.+.|.. .+ |+.......... ....+.+++.. ++.+
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~SpDG-~~-la~~~~~~~~~~~~~~~i~~~d~~~~g~~ 230 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAH--------RFVTGPRLSPDG-RQ-AVWLAWDHPRMPWEGTELKTARVTEDGRF 230 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCS--------SEECCCEECTTS-SE-EEEEEECTTCCTTTCEEEEEEEECTTSCE
T ss_pred eEEEEEECCCCccccCCceeEEEecCC--------CcccCceECCCC-CE-EEEEECCCCCCCCCCcEEEEEEECCCCcc
Confidence 4799999998 7777665 322 112223445433 22 222222111000 23578899998 5744
Q ss_pred EEccccCcccccccccccccccccCceeE-eCceEEEeccCCCCCcEEEEEECCCceeeeec-CCCcccccCCce---eE
Q 046902 181 RRISNLPRFLRDFYDYLYHSLFRKGYGVL-AGGALHWVSPKSSTRSVIVAFDLVAEEFYQLP-LPDSVNVSYANV---HV 255 (393)
Q Consensus 181 ~~~~~~p~~~~~~~~~~~~~~~~~~~~v~-~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~---~~ 255 (393)
.....+.. ..........+ -+|.+|+.+.. +....|..+|+.+.++..+. ...... ...+ ..
T Consensus 231 ~~~~~l~~----------~~~~~~~~~~~spdg~l~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~--~p~w~~~~~ 297 (662)
T 3azo_A 231 ADTRTLLG----------GPEEAIAQAEWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFA--GPLWTPGMR 297 (662)
T ss_dssp EEEEEEEE----------ETTBCEEEEEECTTSCEEEEECT-TSSCEEEEECTTTCCEEESSCCSSBSS--CCCCSTTCC
T ss_pred cccEEeCC----------CCCceEcceEECCCCeEEEEECC-CCCeEEEEEECCCCceeeccccccccc--CccccccCc
Confidence 33322210 00001111222 37888877654 23458999999887776542 221111 0001 01
Q ss_pred EEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc-C---cEEEE
Q 046902 256 DVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-R---EKLVW 330 (393)
Q Consensus 256 ~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~---~~l~~ 330 (393)
.+... +|++.+.... ....||.++-.+ .. ..++.... .....+. ..+++.+++... . ..++.
T Consensus 298 ~~~~~~~~~~~~~~~~--~~~~l~~~d~~~--~~---~~~l~~~~-----~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~ 364 (662)
T 3azo_A 298 WFAPLANGLIAVVHGK--GAAVLGILDPES--GE---LVDAAGPW-----TEWAATL-TVSGTRAVGVAASPRTAYEVVE 364 (662)
T ss_dssp SEEECTTSCEEEEEBS--SSCEEEEEETTT--TE---EEECCSSC-----CEEEEEE-EEETTEEEEEEEETTEEEEEEE
T ss_pred eEeEeCCCEEEEEEEc--CccEEEEEECCC--Cc---EEEecCCC-----CeEEEEE-ecCCCEEEEEEcCCCCCCEEEE
Confidence 23333 7787766655 588999998532 22 23333211 1122331 445666665532 2 25899
Q ss_pred EECCCCcEEEE
Q 046902 331 FDLETNSLRTV 341 (393)
Q Consensus 331 yd~~t~~~~~v 341 (393)
+|+++++.+.+
T Consensus 365 ~d~~~g~~~~l 375 (662)
T 3azo_A 365 LDTVTGRARTI 375 (662)
T ss_dssp EETTTCCEEEE
T ss_pred EECCCCceEEe
Confidence 99999988776
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=84.60 E-value=22 Score=31.77 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=40.7
Q ss_pred CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCC-CCCCcceeeEEEEEeCCcEEEEEEcC---cEEEEEECCCC
Q 046902 261 EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPT-PTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETN 336 (393)
Q Consensus 261 ~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~-~~~~~~~~~~~~~~~~g~~i~l~~~~---~~l~~yd~~t~ 336 (393)
+| .++....+..+.||-+.. . ..+..+.... .........-+.+.+++..|+....+ ..+..||+.++
T Consensus 197 ~~--~l~~~~~dg~i~i~d~~~----~--~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~ 268 (397)
T 1sq9_A 197 RG--LIATGFNNGTVQISELST----L--RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG 268 (397)
T ss_dssp TS--EEEEECTTSEEEEEETTT----T--EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred Cc--eEEEEeCCCcEEEEECCC----C--ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 45 444444445899998764 1 2333333200 00000124456777788877777666 67999999887
Q ss_pred cEE
Q 046902 337 SLR 339 (393)
Q Consensus 337 ~~~ 339 (393)
+..
T Consensus 269 ~~~ 271 (397)
T 1sq9_A 269 ERI 271 (397)
T ss_dssp CEE
T ss_pred ccc
Confidence 643
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=84.55 E-value=18 Score=30.74 Aligned_cols=196 Identities=13% Similarity=0.113 Sum_probs=100.2
Q ss_pred EeeeeeceEEEeeC-CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEE
Q 046902 95 VLGSCNGLIALCNS-VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVY 173 (393)
Q Consensus 95 ~~~s~~GLl~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vy 173 (393)
+....+|-+.+... ...+.++||. ++...++.+. . .....++.+|+... +..... ....+.+|
T Consensus 20 i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~---~---~~~~~~i~~~~~g~---l~v~~~------~~~~i~~~ 83 (299)
T 2z2n_A 20 ITVSDKGKVWITQHKANMISCINLD-GKITEYPLPT---P---DAKVMCLTISSDGE---VWFTEN------AANKIGRI 83 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSS---T---TCCEEEEEECTTSC---EEEEET------TTTEEEEE
T ss_pred eEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCc---c---cCceeeEEECCCCC---EEEeCC------CCCeEEEE
Confidence 44455676666654 4679999998 7766655332 0 12345666776432 222211 12356667
Q ss_pred EeCCCCeEEccccCcccccccccccccccccCceeEe--CceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCC
Q 046902 174 SLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA--GGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYA 251 (393)
Q Consensus 174 ss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~ 251 (393)
+.. +..+.+. .+. .. ....++.. +|.+|..... ...|..+|. +.+...+..|....
T Consensus 84 ~~~-g~~~~~~-~~~----------~~--~~~~~i~~~~~g~l~v~~~~---~~~i~~~d~-~g~~~~~~~~~~~~---- 141 (299)
T 2z2n_A 84 TKK-GIIKEYT-LPN----------PD--SAPYGITEGPNGDIWFTEMN---GNRIGRITD-DGKIREYELPNKGS---- 141 (299)
T ss_dssp CTT-SCEEEEE-CSS----------TT--CCEEEEEECTTSCEEEEETT---TTEEEEECT-TCCEEEEECSSTTC----
T ss_pred CCC-CcEEEEe-CCC----------cC--CCceeeEECCCCCEEEEecC---CceEEEECC-CCCEEEecCCCCCC----
Confidence 664 4554432 120 00 11223333 5777765432 357999999 66776666553221
Q ss_pred ceeEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc-CcEEE
Q 046902 252 NVHVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REKLV 329 (393)
Q Consensus 252 ~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~l~ 329 (393)
. ...++.. +|.|++...... .+ ++++.. ..... ..+.. . .....-+++.++|. +++... ...+.
T Consensus 142 ~-~~~i~~~~~g~l~v~~~~~~-~i--~~~~~~---g~~~~-~~~~~-~----~~~~~~i~~~~~g~-l~v~~~~~~~i~ 207 (299)
T 2z2n_A 142 Y-PSFITLGSDNALWFTENQNN-AI--GRITES---GDITE-FKIPT-P----ASGPVGITKGNDDA-LWFVEIIGNKIG 207 (299)
T ss_dssp C-EEEEEECTTSCEEEEETTTT-EE--EEECTT---CCEEE-EECSS-T----TCCEEEEEECTTSS-EEEEETTTTEEE
T ss_pred C-CceEEEcCCCCEEEEeCCCC-EE--EEEcCC---CcEEE-eeCCC-C----CCcceeEEECCCCC-EEEEccCCceEE
Confidence 1 1244444 788887664322 44 444431 23332 11211 1 11122345555665 666553 45799
Q ss_pred EEECCCCcEEEEEE
Q 046902 330 WFDLETNSLRTVKI 343 (393)
Q Consensus 330 ~yd~~t~~~~~v~~ 343 (393)
.||+ ++++..+..
T Consensus 208 ~~~~-~g~~~~~~~ 220 (299)
T 2z2n_A 208 RITT-SGEITEFKI 220 (299)
T ss_dssp EECT-TCCEEEEEC
T ss_pred EECC-CCcEEEEEC
Confidence 9999 777766533
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=84.35 E-value=22 Score=32.19 Aligned_cols=71 Identities=7% Similarity=-0.024 Sum_probs=46.5
Q ss_pred CCeEEEEEEcCC------CeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCc-EEEEEE-cCcEEEEEE
Q 046902 261 EGCLCVFRFYNL------VYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGV-KLLLEV-RREKLVWFD 332 (393)
Q Consensus 261 ~G~L~~~~~~~~------~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~-~i~l~~-~~~~l~~yd 332 (393)
+++||+...... ..-.||+++- ...+.+.+|+... ...-+++.++|. .+|... .++.+..||
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~----~t~~vv~~i~~g~------~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTG----LVGQTSSQISLGH------DVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEEC----CCCEEEEEEECCC------CcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 466777654211 1246888874 4577778887643 245678888988 566554 356799999
Q ss_pred CCCCcEEEE
Q 046902 333 LETNSLRTV 341 (393)
Q Consensus 333 ~~t~~~~~v 341 (393)
.+|.+....
T Consensus 348 ~~t~~vv~~ 356 (373)
T 2mad_H 348 AGAGDQDQS 356 (373)
T ss_pred CCCCCEEee
Confidence 999876543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.09 E-value=21 Score=31.25 Aligned_cols=182 Identities=9% Similarity=0.114 Sum_probs=92.5
Q ss_pred eCCceEEEEeccccceec-cCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccc
Q 046902 107 NSVQELALFNPSTRKLKT-LPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISN 185 (393)
Q Consensus 107 ~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~ 185 (393)
..+..+.+||..+++... +...+ .....+.+.|..+ + ++... ....+.+|+.+++.-...-.
T Consensus 99 s~D~~i~lWd~~~~~~~~~~~~~~--------~~~~~~~~spdg~-~--l~~g~------~dg~v~i~~~~~~~~~~~~~ 161 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSIDAGP--------VDAWTLAFSPDSQ-Y--LATGT------HVGKVNIFGVESGKKEYSLD 161 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCT--------TCCCCEEECTTSS-E--EEEEC------TTSEEEEEETTTCSEEEEEE
T ss_pred eCCCcEEEEECCCCCEEEEEeCCC--------ccEEEEEECCCCC-E--EEEEc------CCCcEEEEEcCCCceeEEec
Confidence 356789999998876443 32222 1112345555432 2 22221 23467888887764321100
Q ss_pred cCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCceeEEEEE-eCCe
Q 046902 186 LPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVDVGS-LEGC 263 (393)
Q Consensus 186 ~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~l~~-~~G~ 263 (393)
.. ......-...-+|.....+.. ...|..+|+.+.+... +...... .. .+.- -+|.
T Consensus 162 ~~------------~~~v~~~~~spdg~~lasg~~---dg~i~iwd~~~~~~~~~~~~h~~~------v~-~l~~spd~~ 219 (321)
T 3ow8_A 162 TR------------GKFILSIAYSPDGKYLASGAI---DGIINIFDIATGKLLHTLEGHAMP------IR-SLTFSPDSQ 219 (321)
T ss_dssp CS------------SSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCCSSC------CC-EEEECTTSC
T ss_pred CC------------CceEEEEEECCCCCEEEEEcC---CCeEEEEECCCCcEEEEEcccCCc------ee-EEEEcCCCC
Confidence 00 000000011124444333332 3468889998765432 3321111 11 2222 2666
Q ss_pred EEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEE
Q 046902 264 LCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLR 339 (393)
Q Consensus 264 L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~ 339 (393)
+.+....+ ..+.||-++.. .....+.-.. ....-+++.++|..++....++.+..||+++++..
T Consensus 220 ~l~s~s~d-g~i~iwd~~~~------~~~~~~~~h~-----~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 220 LLVTASDD-GYIKIYDVQHA------NLAGTLSGHA-----SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp EEEEECTT-SCEEEEETTTC------CEEEEECCCS-----SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEEcCC-CeEEEEECCCc------ceeEEEcCCC-----CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence 65555443 48999987631 1233333211 12345677788887777777778999999988644
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=83.88 E-value=20 Score=30.92 Aligned_cols=190 Identities=10% Similarity=0.021 Sum_probs=93.5
Q ss_pred eEEEeeCCceEEEEeccccceec-cCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCe
Q 046902 102 LIALCNSVQELALFNPSTRKLKT-LPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSW 180 (393)
Q Consensus 102 Ll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W 180 (393)
+|+....+..+.|||..|++... +..- ......+.+.|... .++... ....+.+|+.+++.
T Consensus 69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h--------~~~v~~~~~~~~~~--~l~sgs-------~D~~v~lWd~~~~~- 130 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAH--------PDYIRSIAVHPTKP--YVLSGS-------DDLTVKLWNWENNW- 130 (304)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEEEEEECSSSS--EEEEEE-------TTSCEEEEEGGGTT-
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEeCC--------CCcEEEEEEcCCCC--EEEEEC-------CCCeEEEEECCCCc-
Confidence 44444456789999999887543 2211 12234566666532 222222 23457788876541
Q ss_pred EEccccCcccccccccccccccccCceeEe---CceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCcee-E
Q 046902 181 RRISNLPRFLRDFYDYLYHSLFRKGYGVLA---GGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVH-V 255 (393)
Q Consensus 181 ~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~-~ 255 (393)
.....+. .+. ..-.++.. +|.+...+.. ...|..+|+.+..-.. +..... .... .
T Consensus 131 ~~~~~~~----------~h~--~~v~~v~~~p~~~~~l~sgs~---D~~v~iwd~~~~~~~~~~~~~~~-----~~v~~~ 190 (304)
T 2ynn_A 131 ALEQTFE----------GHE--HFVMCVAFNPKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQE-----RGVNYV 190 (304)
T ss_dssp EEEEEEC----------CCC--SCEEEEEECTTCTTEEEEEET---TSEEEEEETTCSSCSEEEECCCT-----TCEEEE
T ss_pred chhhhhc----------ccC--CcEEEEEECCCCCCEEEEEeC---CCeEEEEECCCCCccceeccCCc-----CcEEEE
Confidence 1111111 000 01112222 2333322222 3578888886543221 111110 1111 1
Q ss_pred EEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECC
Q 046902 256 DVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLE 334 (393)
Q Consensus 256 ~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~ 334 (393)
..... ++.+.+.... +..+.||-++. -..+.++.-.. ....-+.+.+++..|+-...++.+..||.+
T Consensus 191 ~~~~~~~~~~l~s~s~-D~~i~iWd~~~------~~~~~~~~~h~-----~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 191 DYYPLPDKPYMITASD-DLTIKIWDYQT------KSCVATLEGHM-----SNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp EECCSTTCCEEEEEET-TSEEEEEETTT------TEEEEEEECCS-----SCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCCEEEEEcC-CCeEEEEeCCC------CccceeeCCCC-----CCEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 11111 4555444444 44999997753 23444444211 123456777888777766777789999999
Q ss_pred CCcEEEE
Q 046902 335 TNSLRTV 341 (393)
Q Consensus 335 t~~~~~v 341 (393)
+.+....
T Consensus 259 ~~~~~~~ 265 (304)
T 2ynn_A 259 TYKVEKT 265 (304)
T ss_dssp TCCEEEE
T ss_pred CCceeee
Confidence 9876543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=83.82 E-value=19 Score=30.46 Aligned_cols=190 Identities=11% Similarity=0.062 Sum_probs=98.1
Q ss_pred eeceEEEeeC-CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 99 CNGLIALCNS-VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 99 ~~GLl~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
.+|.|...+. ...+.++++.++....+-... .....++.+|+..+. ++.... ....+.+++...
T Consensus 46 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-------~~~p~~ia~d~~~~~--lyv~d~------~~~~I~~~~~~g 110 (267)
T 1npe_A 46 VDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-------LGSPEGIALDHLGRT--IFWTDS------QLDRIEVAKMDG 110 (267)
T ss_dssp TTTEEEEEETTTTEEEEEESSSCCCEEEECTT-------CCCEEEEEEETTTTE--EEEEET------TTTEEEEEETTS
T ss_pred CCCEEEEEECCCCEEEEEecCCCCcEEEEECC-------CCCccEEEEEecCCe--EEEEEC------CCCEEEEEEcCC
Confidence 4667766653 457888888776543332211 122356778876442 222221 234677888764
Q ss_pred CCeEEccccCcccccccccccccccccCceeEe---CceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCcee
Q 046902 178 NSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA---GGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVH 254 (393)
Q Consensus 178 ~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~ 254 (393)
..-+.+.... . ....++.+ +|.+||.... .....|..+++.......+.. .... . .
T Consensus 111 ~~~~~~~~~~------------~--~~P~~i~vd~~~g~lyv~~~~-~~~~~I~~~~~dg~~~~~~~~-~~~~---~--P 169 (267)
T 1npe_A 111 TQRRVLFDTG------------L--VNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGTNRRILAQ-DNLG---L--P 169 (267)
T ss_dssp CSCEEEECSS------------C--SSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTSCCCEEEEC-TTCS---C--E
T ss_pred CCEEEEEECC------------C--CCccEEEEeeCCCEEEEEECC-CCCcEEEEEecCCCCcEEEEE-CCCC---C--C
Confidence 4322221100 0 11223333 6899998532 113578899987654433321 1111 1 1
Q ss_pred EEEEEe--CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc-CcEEEEE
Q 046902 255 VDVGSL--EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REKLVWF 331 (393)
Q Consensus 255 ~~l~~~--~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~l~~y 331 (393)
..++.. ++.||++..... . |++++-.+ . .....+.. ...|.++..+++.+++... ...+..+
T Consensus 170 ~gia~d~~~~~lyv~d~~~~-~--I~~~~~~g---~-~~~~~~~~--------~~~P~gi~~d~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 170 NGLTFDAFSSQLCWVDAGTH-R--AECLNPAQ---P-GRRKVLEG--------LQYPFAVTSYGKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp EEEEEETTTTEEEEEETTTT-E--EEEEETTE---E-EEEEEEEC--------CCSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred cEEEEcCCCCEEEEEECCCC-E--EEEEecCC---C-ceEEEecC--------CCCceEEEEeCCEEEEEECCCCeEEEE
Confidence 233433 578888876543 4 44454322 1 11111221 1345666556677888764 3579999
Q ss_pred ECCCCcEE
Q 046902 332 DLETNSLR 339 (393)
Q Consensus 332 d~~t~~~~ 339 (393)
|+++++..
T Consensus 235 d~~~g~~~ 242 (267)
T 1npe_A 235 DLAISKEM 242 (267)
T ss_dssp ETTTTEEE
T ss_pred eCCCCCce
Confidence 99987643
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=83.61 E-value=24 Score=31.55 Aligned_cols=191 Identities=10% Similarity=0.041 Sum_probs=98.7
Q ss_pred eceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCC
Q 046902 100 NGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNS 179 (393)
Q Consensus 100 ~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~ 179 (393)
.+.|++.. ...+...++-+.+...+.... ....++.+|+..+ +|+.... ....+..++..++.
T Consensus 44 ~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~--------~~~~~l~~d~~~~--~ly~~D~------~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 44 EPVLLFAN-RIDIRQVLPHRSEYTLLLNNL--------ENAIALDFHHRRE--LVFWSDV------TLDRILRANLNGSN 106 (349)
T ss_dssp CCEEEEEC-BSCEEEECTTSCCEEEEECSC--------SCEEEEEEETTTT--EEEEEET------TTTEEEEEETTSCS
T ss_pred CceeEeec-ccceEEEeCCCCeeEEeecCC--------CceEEEEEecccc--EEEEEec------cCCceEEEecCCCC
Confidence 45555553 344667777666554432211 1256888887655 3333221 23467777776655
Q ss_pred eEEccccCcccccccccccccccccCceeE---eCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEE
Q 046902 180 WRRISNLPRFLRDFYDYLYHSLFRKGYGVL---AGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVD 256 (393)
Q Consensus 180 W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~---~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~ 256 (393)
-+.+.... . ....++. .+|.+||.... ...|.++|+....-..+. ..... . ...
T Consensus 107 ~~~~~~~~------------~--~~p~glavd~~~g~ly~~d~~---~~~I~~~~~dG~~~~~l~-~~~l~---~--P~~ 163 (349)
T 3v64_C 107 VEEVVSTG------------L--ESPGGLAVDWVHDKLYWTDSG---TSRIEVANLDGAHRKVLL-WQSLE---K--PRA 163 (349)
T ss_dssp CEEEECSS------------C--SCCCEEEEETTTTEEEEEETT---TTEEEEEETTSCSCEEEE-CTTCS---C--EEE
T ss_pred ceEEEeCC------------C--CCccEEEEecCCCeEEEEcCC---CCeEEEEcCCCCceEEEE-eCCCC---C--cce
Confidence 44432111 0 1122333 37899999543 468999998765433332 11211 1 124
Q ss_pred EEEe--CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc-CcEEEEEEC
Q 046902 257 VGSL--EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REKLVWFDL 333 (393)
Q Consensus 257 l~~~--~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~l~~yd~ 333 (393)
+++. +|.||+..... .-.|++.+-++. . .+ .+-.. ......-+++.++++.||+... ..++..+|+
T Consensus 164 iavdp~~g~ly~td~~~--~~~I~r~~~dG~-~--~~--~~~~~----~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~ 232 (349)
T 3v64_C 164 IALHPMEGTIYWTDWGN--TPRIEASSMDGS-G--RR--IIADT----HLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 232 (349)
T ss_dssp EEEETTTTEEEEEECSS--SCEEEEEETTSC-S--CE--ESCCS----SCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEecCcCeEEEeccCC--CCEEEEEeCCCC-C--cE--EEEEC----CCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 4444 78888876543 234566654331 1 11 11111 1112334555555677877653 346888988
Q ss_pred CCCcEEEE
Q 046902 334 ETNSLRTV 341 (393)
Q Consensus 334 ~t~~~~~v 341 (393)
++...+.+
T Consensus 233 dG~~~~~~ 240 (349)
T 3v64_C 233 DGSHRKAV 240 (349)
T ss_dssp TSCSCEEE
T ss_pred CCCceEEE
Confidence 87655544
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=83.53 E-value=22 Score=30.96 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=26.1
Q ss_pred eEEEEEeCCcEEEEEEcCcEEEEEECCCCcE-EEEEE
Q 046902 308 RPLGYSRNGVKLLLEVRREKLVWFDLETNSL-RTVKI 343 (393)
Q Consensus 308 ~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~-~~v~~ 343 (393)
.-+++.++|+.|++...+..+..||+++.+. ..+..
T Consensus 298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 298 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred cceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 3567788888888865566899999998763 34444
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=83.36 E-value=33 Score=32.90 Aligned_cols=198 Identities=12% Similarity=0.066 Sum_probs=102.5
Q ss_pred eeceEEEee-CCceEEEEeccccceec-cCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEe-
Q 046902 99 CNGLIALCN-SVQELALFNPSTRKLKT-LPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSL- 175 (393)
Q Consensus 99 ~~GLl~~~~-~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss- 175 (393)
-+|.++... .+..+.|+|+.|++... ++... . ..++.++|..+ | ++... ..-.+.+|+.
T Consensus 147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~-------~--~~~v~~spdg~-~-l~v~~-------~d~~V~v~D~~ 208 (543)
T 1nir_A 147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-------A--VHISRMSASGR-Y-LLVIG-------RDARIDMIDLW 208 (543)
T ss_dssp GGGEEEEEEGGGTEEEEEETTTCCEEEEEECST-------T--EEEEEECTTSC-E-EEEEE-------TTSEEEEEETT
T ss_pred CCCEEEEEEcCCCeEEEEECCCceEEEEEecCc-------c--cceEEECCCCC-E-EEEEC-------CCCeEEEEECc
Confidence 366666654 34579999999987543 33211 1 34666777543 2 22222 1257889998
Q ss_pred -CCCCeEEccccCcccccccccccccccccCceeE--e----CceEEEeccCCCCCcEEEEEECCCceee-eecCCCccc
Q 046902 176 -KTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVL--A----GGALHWVSPKSSTRSVIVAFDLVAEEFY-QLPLPDSVN 247 (393)
Q Consensus 176 -~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~----~G~lyw~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~ 247 (393)
.++. .+..++. . ....++. - +|..-+.+.. ....|.++|..+.+.. .++.+....
T Consensus 209 ~~t~~--~~~~i~~----------g---~~p~~va~sp~~~~dg~~l~v~~~--~~~~v~v~D~~t~~~~~~i~~~g~~~ 271 (543)
T 1nir_A 209 AKEPT--KVAEIKI----------G---IEARSVESSKFKGYEDRYTIAGAY--WPPQFAIMDGETLEPKQIVSTRGMTV 271 (543)
T ss_dssp SSSCE--EEEEEEC----------C---SEEEEEEECCSTTCTTTEEEEEEE--ESSEEEEEETTTCCEEEEEECCEECS
T ss_pred CCCCc--EEEEEec----------C---CCcceEEeCCCcCCCCCEEEEEEc--cCCeEEEEeccccccceeecccCccc
Confidence 5543 2222220 0 0111222 2 5654444332 1357889998876543 344432100
Q ss_pred cc----CCceeEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEE
Q 046902 248 VS----YANVHVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLE 322 (393)
Q Consensus 248 ~~----~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~ 322 (393)
.. ....-..+... +|..+++...+...+.+|-+.+.. . .++.++.... ...-+++.++|..++..
T Consensus 272 ~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~--~--l~~~~i~~~~------~~~~~~~spdg~~l~va 341 (543)
T 1nir_A 272 DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID--N--LTVTSIGAAP------FLHDGGWDSSHRYFMTA 341 (543)
T ss_dssp SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS--S--CEEEEEECCS------SCCCEEECTTSCEEEEE
T ss_pred CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC--c--ceeEEeccCc------CccCceECCCCCEEEEE
Confidence 00 00011233333 355555555544467666655321 1 1233454322 23457888898877766
Q ss_pred Ec-CcEEEEEECCCCcEEEE
Q 046902 323 VR-REKLVWFDLETNSLRTV 341 (393)
Q Consensus 323 ~~-~~~l~~yd~~t~~~~~v 341 (393)
.. ++.+..+|.+++++...
T Consensus 342 ~~~~~~v~v~D~~tg~l~~~ 361 (543)
T 1nir_A 342 ANNSNKVAVIDSKDRRLSAL 361 (543)
T ss_dssp EGGGTEEEEEETTTTEEEEE
T ss_pred ecCCCeEEEEECCCCeEEEe
Confidence 53 45799999999986553
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=83.36 E-value=24 Score=31.35 Aligned_cols=183 Identities=13% Similarity=0.097 Sum_probs=90.5
Q ss_pred eEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeE
Q 046902 102 LIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWR 181 (393)
Q Consensus 102 Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~ 181 (393)
.|+....+..+.+||..+++....-... ......+.+.+..+.-.++... ....+.+|+.+++...
T Consensus 168 ~l~t~s~D~~v~lwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~g~~l~sgs-------~Dg~v~~wd~~~~~~~ 233 (354)
T 2pbi_B 168 QILTASGDGTCALWDVESGQLLQSFHGH-------GADVLCLDLAPSETGNTFVSGG-------CDKKAMVWDMRSGQCV 233 (354)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECC-------SSCEEEEEECCCSSCCEEEEEE-------TTSCEEEEETTTCCEE
T ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcCC-------CCCeEEEEEEeCCCCCEEEEEe-------CCCeEEEEECCCCcEE
Confidence 3444445678999999888754321111 1123344455543323333322 2346889998887543
Q ss_pred EccccCcccccccccccccccccCceeEe--CceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCceeEEEE
Q 046902 182 RISNLPRFLRDFYDYLYHSLFRKGYGVLA--GGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVDVG 258 (393)
Q Consensus 182 ~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~l~ 258 (393)
.. +. .+. ..-.++.+ +|.....+.. ...|-.+|+.+..-.. +...... .... .+.
T Consensus 234 ~~--~~----------~h~--~~v~~v~~~p~~~~l~s~s~---D~~v~lwd~~~~~~~~~~~~~~~~----~~~~-~~~ 291 (354)
T 2pbi_B 234 QA--FE----------THE--SDVNSVRYYPSGDAFASGSD---DATCRLYDLRADREVAIYSKESII----FGAS-SVD 291 (354)
T ss_dssp EE--EC----------CCS--SCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCTTCC----SCEE-EEE
T ss_pred EE--ec----------CCC--CCeEEEEEeCCCCEEEEEeC---CCeEEEEECCCCcEEEEEcCCCcc----ccee-EEE
Confidence 21 11 000 01112222 3444333332 3568889988764332 2221111 0111 222
Q ss_pred -EeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEE
Q 046902 259 -SLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFD 332 (393)
Q Consensus 259 -~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd 332 (393)
..+|.+.++...+. .+.||-+... ..+..+.-.. ....-+++.++|..|+-...++.+..||
T Consensus 292 ~s~~g~~l~~g~~d~-~i~vwd~~~~------~~~~~l~~h~-----~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 292 FSLSGRLLFAGYNDY-TINVWDVLKG------SRVSILFGHE-----NRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECTTSSEEEEEETTS-CEEEEETTTC------SEEEEECCCS-----SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EeCCCCEEEEEECCC-cEEEEECCCC------ceEEEEECCC-----CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 23677766666544 8999977531 1233332111 1244567788888777766666677664
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=83.28 E-value=26 Score=31.73 Aligned_cols=188 Identities=13% Similarity=0.002 Sum_probs=93.5
Q ss_pred eEEEee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCC-CCccEEEEEEeCCCC
Q 046902 102 LIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGND-GDDVEVEVYSLKTNS 179 (393)
Q Consensus 102 Ll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~-~~~~~~~Vyss~t~~ 179 (393)
.+++.. .+..+.+||+.+++....-... ....++.++|..+ + ++......... .....+.+|+..++.
T Consensus 225 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~g~-~-l~~~~~~~~~~~~~dg~i~~~d~~~~~ 294 (433)
T 3bws_A 225 LVYCSNWISEDISVIDRKTKLEIRKTDKI--------GLPRGLLLSKDGK-E-LYIAQFSASNQESGGGRLGIYSMDKEK 294 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECCCC--------SEEEEEEECTTSS-E-EEEEEEESCTTCSCCEEEEEEETTTTE
T ss_pred EEEEEecCCCcEEEEECCCCcEEEEecCC--------CCceEEEEcCCCC-E-EEEEECCCCccccCCCeEEEEECCCCc
Confidence 443443 3567999999888765432222 1245566776543 2 22222111100 023478899988774
Q ss_pred eEEccccCcccccccccccccccccCceeEeCc-eEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCceeEEE
Q 046902 180 WRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVDV 257 (393)
Q Consensus 180 W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~l 257 (393)
-......+ . ....-...-+| .+|..... ...|..+|+.+.+... ++..... ..+
T Consensus 295 ~~~~~~~~------------~-~~~~~~~~~~g~~l~~~~~~---~~~v~v~d~~~~~~~~~~~~~~~~--------~~~ 350 (433)
T 3bws_A 295 LIDTIGPP------------G-NKRHIVSGNTENKIYVSDMC---CSKIEVYDLKEKKVQKSIPVFDKP--------NTI 350 (433)
T ss_dssp EEEEEEEE------------E-CEEEEEECSSTTEEEEEETT---TTEEEEEETTTTEEEEEEECSSSE--------EEE
T ss_pred EEeeccCC------------C-CcceEEECCCCCEEEEEecC---CCEEEEEECCCCcEEEEecCCCCC--------CeE
Confidence 33221111 0 00011112245 45554332 3689999998765433 3322111 133
Q ss_pred EEe-CCe-EEEEEEcC-------------CCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEE
Q 046902 258 GSL-EGC-LCVFRFYN-------------LVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLE 322 (393)
Q Consensus 258 ~~~-~G~-L~~~~~~~-------------~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~ 322 (393)
... +|+ |++..... +..+.+|-++. .+.+..+.... ...-+++.++|..++..
T Consensus 351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~------~~~~~~~~~~~------~~~~~~~s~dg~~l~~~ 418 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT------DTVKEFWEAGN------QPTGLDVSPDNRYLVIS 418 (433)
T ss_dssp EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT------TEEEEEEECSS------SEEEEEECTTSCEEEEE
T ss_pred EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC------CcEEEEecCCC------CCceEEEcCCCCEEEEE
Confidence 333 565 44443321 12677775542 33444444321 23456777888877776
Q ss_pred Ec-CcEEEEEECCC
Q 046902 323 VR-REKLVWFDLET 335 (393)
Q Consensus 323 ~~-~~~l~~yd~~t 335 (393)
.. +..+..||+++
T Consensus 419 ~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 419 DFLDHQIRVYRRDG 432 (433)
T ss_dssp ETTTTEEEEEEETT
T ss_pred ECCCCeEEEEEecC
Confidence 54 56788888763
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=83.26 E-value=21 Score=30.66 Aligned_cols=67 Identities=7% Similarity=0.120 Sum_probs=40.0
Q ss_pred CeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCC---cEEEEEEcCcEEEEEECCCC
Q 046902 262 GCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNG---VKLLLEVRREKLVWFDLETN 336 (393)
Q Consensus 262 G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g---~~i~l~~~~~~l~~yd~~t~ 336 (393)
+++.+.+..+ ..+.||-++.. ...|.....+.-.. ....-+.+.+++ ..+.-...++.+..||+++.
T Consensus 170 ~~~l~sgs~D-~~v~lwd~~~~--~~~~~~~~~l~~H~-----~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 170 SRKFVTGGAD-NLVKIWKYNSD--AQTYVLESTLEGHS-----DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp CCEEEEEETT-SCEEEEEEETT--TTEEEEEEEECCCS-----SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred cceEEEEcCC-CcEEEEEEcCC--CceEEEEEEecCCC-----CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 4454544444 48999998752 24576666554311 124456677764 44444555667999998874
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=83.11 E-value=27 Score=31.77 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=40.0
Q ss_pred CeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCc
Q 046902 262 GCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNS 337 (393)
Q Consensus 262 G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~ 337 (393)
|.+.+.+..+. .+.||-+.. -..+..+.-.. ....-+.+.++|..|+-...++.+..||.++++
T Consensus 308 g~~l~sgs~D~-~i~iwd~~~------~~~~~~~~~h~-----~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 308 GPFLLSGSRDK-TIKMWDVST------GMCLMTLVGHD-----NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp CCEEEEEETTS-EEEEEETTT------TEEEEEEECCS-----SCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred CCEEEEEeCCC-eEEEEECCC------CceEEEEECCC-----CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 55555555444 899998763 12333333211 123456777888877777777789999998875
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=82.81 E-value=13 Score=37.08 Aligned_cols=128 Identities=13% Similarity=0.046 Sum_probs=62.9
Q ss_pred CceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEE--eCCeEEEEEEcCCCeEEEEEEeecCCCCC
Q 046902 211 GGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGS--LEGCLCVFRFYNLVYVDMWMMKEHAVKES 288 (393)
Q Consensus 211 ~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~--~~G~L~~~~~~~~~~~~iW~l~~~~~~~~ 288 (393)
+|.|||.... ....|.++++....-..+... ... .. ..|+. .+|+||++..... . |++++-.+. .
T Consensus 507 ~g~ly~td~~--~~~~I~~~~~dG~~~~~l~~~-~l~---~P--nGlavd~~~~~LY~aD~~~~-~--I~~~d~dG~-~- 573 (699)
T 1n7d_A 507 HGFMYWTDWG--TPAKIKKGGLNGVDIYSLVTE-NIQ---WP--NGITLDLLSGRLYWVDSKLH-S--ISSIDVNGG-N- 573 (699)
T ss_dssp SSCCEECCCS--SSCCEEBCCSSSCCCCEESCS-SCS---SC--CCEEECTTTCCEEEEETTTT-E--EEEECSSSS-C-
T ss_pred CCcEEEcccC--CCCeEEEEeCCCCCeeEEEeC-CCC---Cc--cEEEEeccCCEEEEEecCCC-e--EEEEccCCC-c-
Confidence 6899998532 125788888765433322110 110 00 12333 3688888875433 3 445543231 1
Q ss_pred eEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc-CcEEEEEECCCCcEEEEEEecCCCC-eeeeEEEEecc
Q 046902 289 WTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REKLVWFDLETNSLRTVKIDTHGLD-FVDTEICMASL 360 (393)
Q Consensus 289 W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~l~~yd~~t~~~~~v~~~~~~~~-~~~~~~y~~SL 360 (393)
-..+ +.... ....|.++..+++.||+... ...|..+|..+++...+-. .+.. -..+.+|.+..
T Consensus 574 ~~~~--~~~~~-----~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~--~~~~~P~~i~v~~~~~ 638 (699)
T 1n7d_A 574 RKTI--LEDEK-----RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA--ENLLSPEDMVLFHQLT 638 (699)
T ss_dssp CEEE--CCCSS-----SCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC--TTCSSCCCCCBCSSSS
T ss_pred eEEE--EecCC-----cCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee--cCCCCCcEEEEeCccc
Confidence 1111 11100 12335555445567777643 3579999998876554311 2222 33444555544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=82.73 E-value=29 Score=31.78 Aligned_cols=212 Identities=13% Similarity=0.040 Sum_probs=108.4
Q ss_pred eeceEEEeeC-CceEEEEeccccc----eeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEE
Q 046902 99 CNGLIALCNS-VQELALFNPSTRK----LKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVY 173 (393)
Q Consensus 99 ~~GLl~~~~~-~~~~~V~NP~T~~----~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vy 173 (393)
.+|.|...+. ...++..++-.+. ...+.... .....++.+|...+. |..... ....++++
T Consensus 122 ~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~-------~~~p~glavD~~~~~--lY~~d~------~~~~I~~~ 186 (400)
T 3p5b_L 122 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-------IQAPDGLAVDWIHSN--IYWTDS------VLGTVSVA 186 (400)
T ss_dssp TTTEEEEEETTTTEEEEEEC------CCCEEEECSS-------CSCEEEEEEETTTTE--EEEEET------TTTEEEEE
T ss_pred ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC-------CCCcccEEEEecCCc--eEEEEC------CCCeEEEE
Confidence 4677776653 3467777775421 22221111 123457888875543 333221 23467788
Q ss_pred EeCCCCeEEccccCcccccccccccccccccCceeEe---CceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccC
Q 046902 174 SLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA---GGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSY 250 (393)
Q Consensus 174 ss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~ 250 (393)
+.....-+.+.... . ....++.+ +|.|||.... ....|..+|+....-..+.. ....
T Consensus 187 ~~~g~~~~~l~~~~------------~--~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~~~~~~~~-~~l~--- 246 (400)
T 3p5b_L 187 DTKGVKRKTLFREN------------G--SKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVDIYSLVT-ENIQ--- 246 (400)
T ss_dssp CTTTCSEEEEEECS------------S--CCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSCSCEEEEC-SSCS---
T ss_pred eCCCCceEEEEeCC------------C--CCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCCccEEEEE-CCCC---
Confidence 77665544332111 0 11223443 6899998543 12579999987544333211 1111
Q ss_pred CceeEEEEEe--CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc-CcE
Q 046902 251 ANVHVDVGSL--EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REK 327 (393)
Q Consensus 251 ~~~~~~l~~~--~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~ 327 (393)
. ...|+.. +|+||++..... .||+.+-.+ ....+.. .... ....|.++.-+++.||+... ...
T Consensus 247 ~--P~glavd~~~~~lY~aD~~~~---~I~~~d~dG-~~~~~~~---~~~~-----~l~~P~gl~v~~~~lywtd~~~~~ 312 (400)
T 3p5b_L 247 W--PNGITLDLLSGRLYWVDSKLH---SISSIDVNG-GNRKTIL---EDEK-----RLAHPFSLAVFEDKVFWTDIINEA 312 (400)
T ss_dssp C--EEEEEEETTTTEEEEEETTTT---EEEEEETTS-CCCEEEE---ECSS-----TTSSEEEEEEETTEEEEEESSSCS
T ss_pred c--eEEEEEEeCCCEEEEEECCCC---EEEEEeCCC-CccEEEE---eCCC-----CCCCCEEEEEeCCEEEEecCCCCe
Confidence 1 1234444 788999875433 466666433 2222221 1111 12456666656677887653 346
Q ss_pred EEEEECCCCc-EEEEEEecCCCC-eeeeEEEEecccc
Q 046902 328 LVWFDLETNS-LRTVKIDTHGLD-FVDTEICMASLVP 362 (393)
Q Consensus 328 l~~yd~~t~~-~~~v~~~~~~~~-~~~~~~y~~SL~~ 362 (393)
+..+|..+++ .+.|. .+.. -+.+.+|.+..-+
T Consensus 313 V~~~~~~~G~~~~~i~---~~~~~p~~i~v~~~~~qp 346 (400)
T 3p5b_L 313 IFSANRLTGSDVNLLA---ENLLSPEDMVLFHNLTQP 346 (400)
T ss_dssp EEEEESSSCCCCEEEE---CSCSCEEEEEEESGGGSC
T ss_pred EEEEEcCCCCceEEEe---cCCCCCceEEEEeeccCC
Confidence 9999966654 44442 3443 5667778777654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=82.72 E-value=38 Score=33.23 Aligned_cols=153 Identities=10% Similarity=0.089 Sum_probs=75.9
Q ss_pred ccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEeCce-EEEeccC-CCCCcEEEEEECCCc-eeeeecCC
Q 046902 167 DVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPK-SSTRSVIVAFDLVAE-EFYQLPLP 243 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~-~~~~~~il~fD~~~e-~~~~i~lP 243 (393)
...+.+++..++.-+.+..... ...........-+|. ++..... ......|..+|+.+. ....+...
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~ 303 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEP----------KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE 303 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSC----------TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred eeEEEEEECCCCceEeeccCCC----------CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc
Confidence 4578888888876554432110 000001111123554 4443322 122357999999887 65554211
Q ss_pred CcccccCCc-eeEEEEEe--CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEE
Q 046902 244 DSVNVSYAN-VHVDVGSL--EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLL 320 (393)
Q Consensus 244 ~~~~~~~~~-~~~~l~~~--~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~ 320 (393)
..... ... ..+. ..- +|++.++.. ......||.++..+ . ....+... .......+++.++|+.|+
T Consensus 304 ~~~~~-~~~~~~~~-~sp~~dg~~l~~~~-~~g~~~l~~~~~~~--~---~~~~l~~~----~~~v~~~~~~spdg~~l~ 371 (706)
T 2z3z_A 304 TDKHY-VEPLHPLT-FLPGSNNQFIWQSR-RDGWNHLYLYDTTG--R---LIRQVTKG----EWEVTNFAGFDPKGTRLY 371 (706)
T ss_dssp ECSSC-CCCCSCCE-ECTTCSSEEEEEEC-TTSSCEEEEEETTS--C---EEEECCCS----SSCEEEEEEECTTSSEEE
T ss_pred cCCCe-ECccCCce-eecCCCCEEEEEEc-cCCccEEEEEECCC--C---EEEecCCC----CeEEEeeeEEcCCCCEEE
Confidence 11000 000 0111 122 777544443 33478899988322 2 22233221 111233467788888887
Q ss_pred EEEcC-----cEEEEEECCCCcEEEE
Q 046902 321 LEVRR-----EKLVWFDLETNSLRTV 341 (393)
Q Consensus 321 l~~~~-----~~l~~yd~~t~~~~~v 341 (393)
+.... ..++.+|+++++.+.+
T Consensus 372 ~~~~~~~~~~~~l~~~d~~~~~~~~l 397 (706)
T 2z3z_A 372 FESTEASPLERHFYCIDIKGGKTKDL 397 (706)
T ss_dssp EEESSSCTTCBEEEEEETTCCCCEES
T ss_pred EEecCCCCceEEEEEEEcCCCCceec
Confidence 76543 2699999998876554
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.63 E-value=30 Score=31.87 Aligned_cols=66 Identities=9% Similarity=-0.063 Sum_probs=40.9
Q ss_pred CeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEE
Q 046902 262 GCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLR 339 (393)
Q Consensus 262 G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~ 339 (393)
|.+.+.+..+ ..+.||-+... .-. ..+.... .....-+.+. +|..++....+..+..||+++++..
T Consensus 210 ~~~l~s~~~d-~~i~vwd~~~~----~~~--~~~~~~h----~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 210 HQFIITSDRD-EHIKISHYPQC----FIV--DKWLFGH----KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNL 275 (450)
T ss_dssp CEEEEEEETT-SCEEEEEESCT----TCE--EEECCCC----SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEE
T ss_pred CcEEEEEcCC-CcEEEEECCCC----cee--eeeecCC----CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEe
Confidence 6666666554 48999998742 111 1111111 1123456677 8888887777778999999998743
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=82.36 E-value=42 Score=33.45 Aligned_cols=187 Identities=9% Similarity=0.051 Sum_probs=93.5
Q ss_pred eEEEeeCCceEEEEeccccceec-cCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCe
Q 046902 102 LIALCNSVQELALFNPSTRKLKT-LPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSW 180 (393)
Q Consensus 102 Ll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W 180 (393)
+|.....+..+.|||..+++... +.... ....++.+.|..+ + ++... ....+.||+..++..
T Consensus 27 ~la~~~~~g~v~iwd~~~~~~~~~~~~~~--------~~v~~~~~s~~~~-~-l~~~~-------~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 27 WVLTTLYSGRVEIWNYETQVEVRSIQVTE--------TPVRAGKFIARKN-W-IIVGS-------DDFRIRVFNYNTGEK 89 (814)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCS--------SCEEEEEEEGGGT-E-EEEEE-------TTSEEEEEETTTCCE
T ss_pred EEEEEeCCCEEEEEECCCCceEEEEecCC--------CcEEEEEEeCCCC-E-EEEEe-------CCCeEEEEECCCCcE
Confidence 33333456678999988876443 32211 2244566666432 2 22222 245789999988765
Q ss_pred EEc-cccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCc-eeee-ecCCCcccccCCceeEEE
Q 046902 181 RRI-SNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAE-EFYQ-LPLPDSVNVSYANVHVDV 257 (393)
Q Consensus 181 ~~~-~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e-~~~~-i~lP~~~~~~~~~~~~~l 257 (393)
... ..-. .....-...-+|..-..+.. ...|..+|+.+. .... +.... .. -..+
T Consensus 90 ~~~~~~~~-------------~~v~~~~~s~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~------~~-v~~~ 146 (814)
T 3mkq_A 90 VVDFEAHP-------------DYIRSIAVHPTKPYVLSGSD---DLTVKLWNWENNWALEQTFEGHE------HF-VMCV 146 (814)
T ss_dssp EEEEECCS-------------SCEEEEEECSSSSEEEEEET---TSEEEEEEGGGTSEEEEEEECCS------SC-EEEE
T ss_pred EEEEecCC-------------CCEEEEEEeCCCCEEEEEcC---CCEEEEEECCCCceEEEEEcCCC------Cc-EEEE
Confidence 332 1111 00000011123433222222 357888998765 3222 22111 11 1133
Q ss_pred EEe--CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEe--CCcEEEEEEcCcEEEEEEC
Q 046902 258 GSL--EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSR--NGVKLLLEVRREKLVWFDL 333 (393)
Q Consensus 258 ~~~--~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~--~g~~i~l~~~~~~l~~yd~ 333 (393)
.-. +|.+.++...+. .+.+|-+.... ..+.. ..... ....-+.+.+ +|..++....++.+..||+
T Consensus 147 ~~~p~~~~~l~~~~~dg-~v~vwd~~~~~--~~~~~----~~~~~----~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDR-TVKVWSLGQST--PNFTL----TTGQE----RGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215 (814)
T ss_dssp EEETTEEEEEEEEETTS-EEEEEETTCSS--CSEEE----ECCCT----TCCCEEEECCSTTCCEEEEECTTSEEEEEET
T ss_pred EEEcCCCCEEEEEeCCC-eEEEEECCCCc--ceeEE----ecCCC----CCEEEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 333 455555555444 89999876421 22222 11110 1233456665 7777777777778999999
Q ss_pred CCCcEE
Q 046902 334 ETNSLR 339 (393)
Q Consensus 334 ~t~~~~ 339 (393)
.+++..
T Consensus 216 ~~~~~~ 221 (814)
T 3mkq_A 216 QTKSCV 221 (814)
T ss_dssp TTTEEE
T ss_pred CCCcEE
Confidence 887643
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=82.34 E-value=30 Score=31.73 Aligned_cols=204 Identities=13% Similarity=0.033 Sum_probs=101.1
Q ss_pred EeeeeeceEEEeeC-CceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEE
Q 046902 95 VLGSCNGLIALCNS-VQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVY 173 (393)
Q Consensus 95 ~~~s~~GLl~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vy 173 (393)
+.-..+|-|++.+. ...+.+++|.+++...+.... . .. . +.+++..+ .++.... .....+.++
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~---~---~~--~-ia~~~~g~--~l~~~d~-----~~~~~I~~~ 199 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF---K---GG--K-PAVTKDKQ--RVYSIGW-----EGTHTVYVY 199 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC---C---BC--B-CEECTTSS--EEEEEBS-----STTCEEEEE
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC---C---CC--c-eeEecCCC--cEEEEec-----CCCceEEEE
Confidence 33345676666653 468999999998877664332 1 11 1 44565543 2222211 011267777
Q ss_pred EeCCCC-eEEccccCcccccccccccccccccCceeE--e-CceEEEeccCCCCCcEEEEEECCCceeeeec---CCCcc
Q 046902 174 SLKTNS-WRRISNLPRFLRDFYDYLYHSLFRKGYGVL--A-GGALHWVSPKSSTRSVIVAFDLVAEEFYQLP---LPDSV 246 (393)
Q Consensus 174 ss~t~~-W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~-~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~---lP~~~ 246 (393)
+..++. .+.+..... ... ....++. - +|.+|+... ...|..+|+.+.....+. .....
T Consensus 200 d~~~~~~~~~~g~~~~---------~~~--~~p~~iav~p~~g~lyv~d~----~~~I~~~d~~~~~~~~~~~~~~~g~~ 264 (409)
T 3hrp_A 200 MKASGWAPTRIGQLGS---------TFS--GKIGAVALDETEEWLYFVDS----NKNFGRFNVKTQEVTLIKQLELSGSL 264 (409)
T ss_dssp EGGGTTCEEEEEECCT---------TSC--SCCCBCEECTTSSEEEEECT----TCEEEEEETTTCCEEEEEECCCCSCC
T ss_pred EcCCCceeEEeeeccc---------hhc--CCcEEEEEeCCCCeEEEEEC----CCcEEEEECCCCCEEEEecccccCCC
Confidence 765432 233311110 000 1112222 2 689999422 357999999877655551 11111
Q ss_pred cccCCceeEEEEEe--CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCC---CCC------CCcceeeEEEEEeC
Q 046902 247 NVSYANVHVDVGSL--EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEP---TPT------RSFLFLRPLGYSRN 315 (393)
Q Consensus 247 ~~~~~~~~~~l~~~--~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~---~~~------~~~~~~~~~~~~~~ 315 (393)
. ...+ ..++.. +|.|++...... . |++++..+ .-... .... ... ..+....-+++.++
T Consensus 265 ~--~~P~-~~ia~~p~~g~lyv~d~~~~-~--I~~~~~~g---~~~~~--~g~~~~~g~~dg~~~~~~~~~P~gia~d~d 333 (409)
T 3hrp_A 265 G--TNPG-PYLIYYFVDSNFYMSDQNLS-S--VYKITPDG---ECEWF--CGSATQKTVQDGLREEALFAQPNGMTVDED 333 (409)
T ss_dssp C--CSSC-CEEEEETTTTEEEEEETTTT-E--EEEECTTC---CEEEE--EECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred C--CCcc-ccEEEeCCCCEEEEEeCCCC-E--EEEEecCC---CEEEE--EeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence 1 1111 034443 688888765433 4 44454322 11111 1111 000 00112333556677
Q ss_pred CcEEEEEE--cCcEEEEEECCCCcEEEE
Q 046902 316 GVKLLLEV--RREKLVWFDLETNSLRTV 341 (393)
Q Consensus 316 g~~i~l~~--~~~~l~~yd~~t~~~~~v 341 (393)
|. |++.. ...++..+|+.++++..+
T Consensus 334 G~-lyvad~~~~~~I~~~~~~~G~v~~~ 360 (409)
T 3hrp_A 334 GN-FYIVDGFKGYCLRKLDILDGYVSTV 360 (409)
T ss_dssp CC-EEEEETTTTCEEEEEETTTTEEEEE
T ss_pred CC-EEEEeCCCCCEEEEEECCCCEEEEE
Confidence 77 66654 456899999888887766
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=81.81 E-value=37 Score=32.46 Aligned_cols=189 Identities=14% Similarity=0.106 Sum_probs=97.2
Q ss_pred eceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCC
Q 046902 100 NGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNS 179 (393)
Q Consensus 100 ~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~ 179 (393)
+++++.........+||..|++.+.|...+ . ..+.++|.. .+ ++....... ....+.+++..++.
T Consensus 122 ~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-------~---~~~~~spDG-~~-la~~~~~~~---~~~~i~~~d~~~g~ 186 (582)
T 3o4h_A 122 EAVVFTGATEDRVALYALDGGGLRELARLP-------G---FGFVSDIRG-DL-IAGLGFFGG---GRVSLFTSNLSSGG 186 (582)
T ss_dssp SCEEEEEECSSCEEEEEEETTEEEEEEEES-------S---CEEEEEEET-TE-EEEEEEEET---TEEEEEEEETTTCC
T ss_pred CeEEEEecCCCCceEEEccCCcEEEeecCC-------C---ceEEECCCC-CE-EEEEEEcCC---CCeEEEEEcCCCCC
Confidence 446666655556679999999888776544 1 234455543 23 222222111 22458888988998
Q ss_pred eEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeE-EE-
Q 046902 180 WRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHV-DV- 257 (393)
Q Consensus 180 W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~-~l- 257 (393)
++.+..-+. . .......-+|...+... ......|..+|+.+.+...+.-............. ..
T Consensus 187 ~~~l~~~~~----------~---~~~~~~SpDG~~l~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T 3o4h_A 187 LRVFDSGEG----------S---FSSASISPGMKVTAGLE-TAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLG 252 (582)
T ss_dssp CEEECCSSC----------E---EEEEEECTTSCEEEEEE-CSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEE
T ss_pred ceEeecCCC----------c---cccceECCCCCEEEEcc-CCCeeEEEEEcCCCCcEEEccCCCcChhhhhhcccccee
Confidence 887753221 0 11112223665544332 22234799999998877632222111000000000 01
Q ss_pred EEeCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcC---cEEEEEECC
Q 046902 258 GSLEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLE 334 (393)
Q Consensus 258 ~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---~~l~~yd~~ 334 (393)
..-+|.+++....+. .+.||.+ +. ... .+. ....-+.+. +|..++..... ..++.+|.+
T Consensus 253 ~spdg~~~~~~~~~g-~~~l~~~---g~---~~~----~~~------~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 253 YLPDGRLAVVARREG-RSAVFID---GE---RVE----APQ------GNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp ECTTSCEEEEEEETT-EEEEEET---TE---EEC----CCS------SEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred EcCCCcEEEEEEcCC-cEEEEEE---CC---eec----cCC------CceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 223777766665544 8999988 31 111 111 123345666 76655544433 258888877
Q ss_pred C
Q 046902 335 T 335 (393)
Q Consensus 335 t 335 (393)
+
T Consensus 315 ~ 315 (582)
T 3o4h_A 315 E 315 (582)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=81.37 E-value=20 Score=32.99 Aligned_cols=114 Identities=4% Similarity=0.038 Sum_probs=63.2
Q ss_pred eCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEEEEcCCCeEEEEEEeecCCCCCe
Q 046902 210 AGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFRFYNLVYVDMWMMKEHAVKESW 289 (393)
Q Consensus 210 ~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W 289 (393)
-+|.+||.... ...|..+|+.+.....+..... .. .+.+...++.|++...... ..||+++..+ .|
T Consensus 140 ~~g~lyv~d~~---~~~I~~id~~~g~~~~~~~~~~-----~~-~ia~~~~g~~l~~~d~~~~--~~I~~~d~~~---~~ 205 (409)
T 3hrp_A 140 GNNTVLAYQRD---DPRVRLISVDDNKVTTVHPGFK-----GG-KPAVTKDKQRVYSIGWEGT--HTVYVYMKAS---GW 205 (409)
T ss_dssp STTEEEEEETT---TTEEEEEETTTTEEEEEEETCC-----BC-BCEECTTSSEEEEEBSSTT--CEEEEEEGGG---TT
T ss_pred CCCCEEEEecC---CCcEEEEECCCCEEEEeeccCC-----CC-ceeEecCCCcEEEEecCCC--ceEEEEEcCC---Cc
Confidence 46899998543 4689999999877766532211 11 1222222334454443322 2677777532 34
Q ss_pred E--EEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCCCcEEEE
Q 046902 290 T--KLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTV 341 (393)
Q Consensus 290 ~--~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t~~~~~v 341 (393)
. ....+.... .....-+++.++++.||+......++.||++++....+
T Consensus 206 ~~~~~g~~~~~~----~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 206 APTRIGQLGSTF----SGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEEEEEECCTTS----CSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEEeeeccchh----cCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 3 221111101 11233467777445677765556799999999886655
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=80.58 E-value=29 Score=30.46 Aligned_cols=183 Identities=12% Similarity=0.113 Sum_probs=91.0
Q ss_pred eceEEEeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCC
Q 046902 100 NGLIALCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNS 179 (393)
Q Consensus 100 ~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~ 179 (393)
+|.++....+..+.|||..+++....-... ......+.+.|... .++. .. ....+.+|+.+++.
T Consensus 154 ~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~--~l~s-g~------~d~~v~~wd~~~~~ 217 (340)
T 1got_B 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGH-------TGDVMSLSLAPDTR--LFVS-GA------CDASAKLWDVREGM 217 (340)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCC-------SSCEEEEEECTTSS--EEEE-EE------TTSCEEEEETTTCS
T ss_pred CCcEEEEECCCcEEEEECCCCcEEEEEcCC-------CCceEEEEECCCCC--EEEE-Ee------CCCcEEEEECCCCe
Confidence 445444445677999999888754322111 12244566666432 2222 21 23468888887764
Q ss_pred eEEccccCcccccccccccccccccCceeE--eCceEEEeccCCCCCcEEEEEECCCceeee-ecCCCcccccCCceeEE
Q 046902 180 WRRISNLPRFLRDFYDYLYHSLFRKGYGVL--AGGALHWVSPKSSTRSVIVAFDLVAEEFYQ-LPLPDSVNVSYANVHVD 256 (393)
Q Consensus 180 W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~~~ 256 (393)
-... +. .+. ..-.++. -+|.....+.. ...|..+|+.+.+-.. +..+... ... ..
T Consensus 218 ~~~~--~~----------~h~--~~v~~v~~~p~~~~l~s~s~---d~~v~iwd~~~~~~~~~~~~~~~~----~~v-~~ 275 (340)
T 1got_B 218 CRQT--FT----------GHE--SDINAICFFPNGNAFATGSD---DATCRLFDLRADQELMTYSHDNII----CGI-TS 275 (340)
T ss_dssp EEEE--EC----------CCS--SCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCTTCC----SCE-EE
T ss_pred eEEE--Ec----------CCc--CCEEEEEEcCCCCEEEEEcC---CCcEEEEECCCCcEEEEEccCCcc----cce-EE
Confidence 3211 11 000 0011122 24544443332 3568899988755322 3322211 111 12
Q ss_pred EEE-eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEE
Q 046902 257 VGS-LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFD 332 (393)
Q Consensus 257 l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd 332 (393)
+.- -+|.+.+++..+. .+.||-+.. ......+.-.. ....-+++.++|..|+-...++.+..||
T Consensus 276 ~~~s~~g~~l~~g~~d~-~i~vwd~~~------~~~~~~~~~h~-----~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDF-NCNVWDALK------ADRAGVLAGHD-----NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECTTSSEEEEEETTS-EEEEEETTT------CCEEEEEECCS-----SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCCEEEEECCCC-eEEEEEccc------CcEeeEeecCC-----CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 222 3677766666544 899997653 22333333211 1234466777877666666666677665
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.10 E-value=51 Score=32.94 Aligned_cols=141 Identities=11% Similarity=0.126 Sum_probs=72.3
Q ss_pred ccEEEEEEeCCCCeEEccccCcccccccccccccccccCceeEe--C--ceEEEeccCCCCCcEEEEEECCCceeeeecC
Q 046902 167 DVEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA--G--GALHWVSPKSSTRSVIVAFDLVAEEFYQLPL 242 (393)
Q Consensus 167 ~~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~--G~lyw~~~~~~~~~~il~fD~~~e~~~~i~l 242 (393)
...+.||+..++.++.+..+. .+. ..-.++.. + |.....+.. ...|..+|+.+..+..+..
T Consensus 30 dg~I~vwd~~~~~~~~~~~l~----------~h~--~~V~~l~~s~~~~~~~l~s~s~---Dg~I~vwd~~~~~~~~~~~ 94 (753)
T 3jro_A 30 DKTIKIFEVEGETHKLIDTLT----------GHE--GPVWRVDWAHPKFGTILASCSY---DGKVLIWKEENGRWSQIAV 94 (753)
T ss_dssp TTEEEEEEEETTEEEEEEEEC----------CCS--SCEEEEEECCTTSCSEEEEEET---TSCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEecCCCCCccceecc----------CCc--CceEEEEecCCCCCCEEEEEeC---CCeEEEEECCCCccccccc
Confidence 457889998887777654333 110 11112322 1 444333332 3568899998887655422
Q ss_pred CCcccccCCceeEEEEEe-C--CeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEe-----
Q 046902 243 PDSVNVSYANVHVDVGSL-E--GCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSR----- 314 (393)
Q Consensus 243 P~~~~~~~~~~~~~l~~~-~--G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~----- 314 (393)
..... .. -..+... + |.+.+++..+. .+.||-+........ ..+.... ....-+.+.+
T Consensus 95 ~~~h~---~~-V~~v~~sp~~~~~~l~sgs~dg-~I~vwdl~~~~~~~~----~~~~~~~-----~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 95 HAVHS---AS-VNSVQWAPHEYGPLLLVASSDG-KVSVVEFKENGTTSP----IIIDAHA-----IGVNSASWAPATIEE 160 (753)
T ss_dssp ECCCS---SC-EEEEEECCGGGCSEEEEEETTS-EEEEEECCSSSCCCC----EEEECCS-----SCEEEEEECCCC---
T ss_pred ccCCC---CC-eEEEEECCCCCCCEEEEEeCCC-cEEEEEeecCCCcce----eEeecCC-----CceEEEEecCccccc
Confidence 11111 11 1123322 3 66666666544 999999875321111 1111100 0122333443
Q ss_pred --------CCcEEEEEEcCcEEEEEECCCC
Q 046902 315 --------NGVKLLLEVRREKLVWFDLETN 336 (393)
Q Consensus 315 --------~g~~i~l~~~~~~l~~yd~~t~ 336 (393)
++..++....++.+..||+.++
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~ 190 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSD 190 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETT
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCC
Confidence 4666777666677888988775
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=80.05 E-value=28 Score=29.88 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=42.1
Q ss_pred eEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECCC-CcEEEE
Q 046902 263 CLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLET-NSLRTV 341 (393)
Q Consensus 263 ~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~t-~~~~~v 341 (393)
.+.+.... +..+.||-++.. ...|.+.. +..... .....-+++.++|..|.....++.+..|+... ++|+.+
T Consensus 220 ~~las~s~-D~~v~iWd~~~~--~~~~~~~~-~~~~~~---~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~~ 292 (297)
T 2pm7_B 220 SYMASVSQ-DRTCIIWTQDNE--QGPWKKTL-LKEEKF---PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA 292 (297)
T ss_dssp EEEEEEET-TSCEEEEEESST--TSCCEEEE-SSSSCC---SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEC
T ss_pred eEEEEEEC-CCcEEEEEeCCC--CCccceee-eecccC---CCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEec
Confidence 44444444 449999998752 23465432 211111 11234567778888777777777788888763 456655
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 393 | ||||
| d1fs1a1 | 41 | a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ | 3e-04 |
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (83), Expect = 3e-04
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 4 KIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDF 41
+P +++ GIF + LL+ V K L +
Sbjct: 3 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 393 | |||
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 99.23 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 98.75 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 98.74 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.67 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 98.51 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.22 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.12 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.99 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.06 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 94.01 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 93.05 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 92.97 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 92.34 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 91.04 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 88.2 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 83.31 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 82.97 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 81.89 |
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=5.9e-13 Score=79.99 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=37.3
Q ss_pred CCCCcHHHHHHHhccCCccceeeeeecccchhhhcCChHH
Q 046902 2 SKKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDF 41 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F 41 (393)
.+.||+|++.+||++||+++++|+++|||+|+.+++++.+
T Consensus 1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l 40 (41)
T d1fs1a1 1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40 (41)
T ss_dssp CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence 3689999999999999999999999999999999998863
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=1.2e-06 Score=75.96 Aligned_cols=196 Identities=13% Similarity=0.096 Sum_probs=119.2
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCCCeEEccccCcc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTNSWRRISNLPRF 189 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~~W~~~~~~p~~ 189 (393)
..+.++||.|++|..+|+++ .... ....+. ++ -|++.+...... .....+++|+..++.|......+.
T Consensus 70 ~~~~~yd~~~~~w~~~~~~p--~~r~-~~~~~~--~~-----~~i~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 137 (288)
T d1zgka1 70 SALDCYNPMTNQWSPCAPMS--VPRN-RIGVGV--ID-----GHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLT- 137 (288)
T ss_dssp CCEEEEETTTTEEEECCCCS--SCCB-TCEEEE--ET-----TEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSS-
T ss_pred chhhhccccccccccccccc--ceec-ceeccc--cc-----eeeEEecceecc-cccceeeeeccccCcccccccccc-
Confidence 46899999999999999877 2211 121211 11 144444332211 133457899999999998876651
Q ss_pred cccccccccccccccCceeEeCceEEEeccC--CCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeEEEE
Q 046902 190 LRDFYDYLYHSLFRKGYGVLAGGALHWVSPK--SSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVF 267 (393)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~--~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~ 267 (393)
.+.....+..++.+|.++.. ......+..||+.+++|.....+.... ........+++++++
T Consensus 138 -----------~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~i~ 201 (288)
T d1zgka1 138 -----------RRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR-----SGAGVCVLHNCIYAA 201 (288)
T ss_dssp -----------CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC-----BSCEEEEETTEEEEE
T ss_pred -----------ccccceeeeeeecceEecCcccccccceEEEeecccccccccccccccc-----ccccccceeeeEEEe
Confidence 12345567788888888654 222356899999999999876544332 123667789999998
Q ss_pred EEcCCC--eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc------CcEEEEEECCCCcEE
Q 046902 268 RFYNLV--YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR------REKLVWFDLETNSLR 339 (393)
Q Consensus 268 ~~~~~~--~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~------~~~l~~yd~~t~~~~ 339 (393)
...... .-.+|..+. ....|+.+..++.. . ...-+++ -++ .||+-.. ...+..||+++++|+
T Consensus 202 GG~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~----r--~~~~~~~-~~~-~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 271 (288)
T d1zgka1 202 GGYDGQDQLNSVERYDV--ETETWTFVAPMKHR----R--SALGITV-HQG-RIYVLGGYDGHTFLDSVECYDPDTDTWS 271 (288)
T ss_dssp CCBCSSSBCCCEEEEET--TTTEEEECCCCSSC----C--BSCEEEE-ETT-EEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred cCccccccccceeeeee--cceeeecccCccCc----c--cceEEEE-ECC-EEEEEecCCCCeecceEEEEECCCCEEE
Confidence 754322 234555543 23567765433221 1 1112222 244 5555321 125899999999999
Q ss_pred EEEE
Q 046902 340 TVKI 343 (393)
Q Consensus 340 ~v~~ 343 (393)
.+..
T Consensus 272 ~~~~ 275 (288)
T d1zgka1 272 EVTR 275 (288)
T ss_dssp EEEE
T ss_pred ECCC
Confidence 9953
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=1.6e-07 Score=81.79 Aligned_cols=238 Identities=12% Similarity=0.060 Sum_probs=134.8
Q ss_pred ceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecC---CCCccEEEEEEeCCCCeEEcccc
Q 046902 110 QELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGN---DGDDVEVEVYSLKTNSWRRISNL 186 (393)
Q Consensus 110 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~---~~~~~~~~Vyss~t~~W~~~~~~ 186 (393)
..+.++||.|++|..+|++| ... .....+.++ + +++.++..... ......+++|+..+++|+.++.+
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p--~~R-~~~~~~~~~------~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~ 88 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQ--VPR-SGLAGCVVG------G-LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM 88 (288)
T ss_dssp CCEEEEETTTTEEEECCCCS--SCC-BSCEEEEET------T-EEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC
T ss_pred ceEEEEECCCCeEEECCCCC--Ccc-ceeEEEEEC------C-EEEEEeCcccCCCCccccchhhhcccccccccccccc
Confidence 46889999999999999877 221 122222221 2 45554432111 11345789999999999999877
Q ss_pred CcccccccccccccccccCceeEeCceEEEeccC--CCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEEEeCCeE
Q 046902 187 PRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK--SSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVGSLEGCL 264 (393)
Q Consensus 187 p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~--~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~~~~G~L 264 (393)
|. .+.....+.++|++|.+... .........+|..++.|...+.+.... .....+..++.+
T Consensus 89 p~------------~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-----~~~~~~~~~~~~ 151 (288)
T d1zgka1 89 SV------------PRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR-----IGVGVAVLNRLL 151 (288)
T ss_dssp SS------------CCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC-----BSCEEEEETTEE
T ss_pred cc------------eecceeccccceeeEEecceecccccceeeeeccccCcccccccccccc-----ccceeeeeeecc
Confidence 72 23445577889999998754 222345788999999998875443321 123567789999
Q ss_pred EEEEEcCCC--eEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-c-----CcEEEEEECCCC
Q 046902 265 CVFRFYNLV--YVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-R-----REKLVWFDLETN 336 (393)
Q Consensus 265 ~~~~~~~~~--~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~-----~~~l~~yd~~t~ 336 (393)
+++...... .-.++.++. ....|.......... ....... .++ .|++.. . ...+..||..++
T Consensus 152 ~~~GG~~~~~~~~~~~~~d~--~~~~~~~~~~~~~~~------~~~~~~~-~~~-~i~i~GG~~~~~~~~~~~~~~~~~~ 221 (288)
T d1zgka1 152 YAVGGFDGTNRLNSAECYYP--ERNEWRMITAMNTIR------SGAGVCV-LHN-CIYAAGGYDGQDQLNSVERYDVETE 221 (288)
T ss_dssp EEECCBCSSCBCCCEEEEET--TTTEEEECCCCSSCC------BSCEEEE-ETT-EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred eEecCcccccccceEEEeec--ccccccccccccccc------ccccccc-eee-eEEEecCccccccccceeeeeecce
Confidence 988754321 234555553 235676543222211 1122222 233 454432 1 125899999999
Q ss_pred cEEEEEEecCCCC--eeeeEEEEeccccCCCCCCCCCCCCCccccccchHHHhh
Q 046902 337 SLRTVKIDTHGLD--FVDTEICMASLVPLSDKGGGCGGGINGMKRRNLEEKEKR 388 (393)
Q Consensus 337 ~~~~v~~~~~~~~--~~~~~~y~~SL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
+|+.+.- .-.+ ...+..+-..|.-+... ......+.++.-+++..+|.
T Consensus 222 ~~~~~~~--~p~~r~~~~~~~~~~~l~v~GG~--~~~~~~~~v~~yd~~~~~W~ 271 (288)
T d1zgka1 222 TWTFVAP--MKHRRSALGITVHQGRIYVLGGY--DGHTFLDSVECYDPDTDTWS 271 (288)
T ss_dssp EEEECCC--CSSCCBSCEEEEETTEEEEECCB--CSSCBCCEEEEEETTTTEEE
T ss_pred eeecccC--ccCcccceEEEEECCEEEEEecC--CCCeecceEEEEECCCCEEE
Confidence 9998832 1112 33444444444443221 11222234455556655554
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.9e-09 Score=79.14 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=43.8
Q ss_pred CCCCcHHHHHHHhccCCccceeeeeecccchhhhcCChHHHHHHHhcc
Q 046902 2 SKKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNHS 49 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~~~~~ 49 (393)
++.||+||+.+||++||+++|+++++|||+|+.++.++.+-+.+..+.
T Consensus 19 i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~ 66 (102)
T d2ovrb1 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE 66 (102)
T ss_dssp TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred hhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 678999999999999999999999999999999999999877766543
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=4.1e-09 Score=76.90 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=37.1
Q ss_pred CCCCcHHHHHHHhccCCccceeeeeecccchhhhcC-ChHHHH
Q 046902 2 SKKIPLDIITGIFCRQPVKSLLRFRCVSKTCCSLID-SQDFIK 43 (393)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~-s~~F~~ 43 (393)
++.||+||+.+||+.|++++|+++++|||+|+.+++ ++.+-+
T Consensus 6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr 48 (100)
T d1nexb1 6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWK 48 (100)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHH
T ss_pred hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 457999999999999999999999999999999985 566533
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=2.5e-08 Score=75.03 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=39.9
Q ss_pred CCCc----HHHHHHHhccCCccceeeeeecccchhhhcCChHHHHHHHhc
Q 046902 3 KKIP----LDIITGIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHLNH 48 (393)
Q Consensus 3 ~~LP----~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~~~~ 48 (393)
+.|| +||+..||+.|++++|+++.+|||+|+.+++++.+-+.+..+
T Consensus 12 ~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~ 61 (118)
T d1p22a1 12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER 61 (118)
T ss_dssp HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred HHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 4566 599999999999999999999999999999998886655443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.12 E-value=2.7e-05 Score=70.25 Aligned_cols=227 Identities=11% Similarity=0.025 Sum_probs=116.1
Q ss_pred eeeeeceEEEee--CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEE
Q 046902 96 LGSCNGLIALCN--SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVY 173 (393)
Q Consensus 96 ~~s~~GLl~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vy 173 (393)
....+|.+++.. ......++||.|++|..+|.++ .. ......++..| =+|+.+............+++|
T Consensus 82 ~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~--~~--r~~~~~~~~~d-----G~v~v~GG~~~~~~~~~~v~~y 152 (387)
T d1k3ia3 82 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ--VA--RGYQSSATMSD-----GRVFTIGGSWSGGVFEKNGEVY 152 (387)
T ss_dssp EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS--SC--CSSCEEEECTT-----SCEEEECCCCCSSSCCCCEEEE
T ss_pred EEecCCcEEEeecCCCcceeEecCccCccccccccc--cc--ccccceeeecC-----Cceeeeccccccccccceeeee
Confidence 334577776654 2356899999999999999887 22 11222222112 2455554322222234578999
Q ss_pred EeCCCCeEEccccCcccccccccccccccccCce-e--EeCceEEEeccCCCCCcEEEEEECCCceeeeec-CCCccc--
Q 046902 174 SLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYG-V--LAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLP-LPDSVN-- 247 (393)
Q Consensus 174 ss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~-v--~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~-lP~~~~-- 247 (393)
+..+++|+.++.++......... .......... + ..+|.+|..... ...+..+|..+..|.... .|....
T Consensus 153 d~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (387)
T d1k3ia3 153 SPSSKTWTSLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPS---TAMNWYYTSGSGDVKSAGKRQSNRGVA 228 (387)
T ss_dssp ETTTTEEEEETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSS---SEEEEEECSTTCEEEEEEECEETTEEC
T ss_pred cCCCCceeecCCCcccccccccc-cceeeccceeEEEEeCCCCEEEecCc---CCcEEecCcccCcEeeccccccCcccC
Confidence 99999999886543211100000 0000001111 1 125777766433 457889999999997752 222111
Q ss_pred c-cCCceeEEEEEeCCeEEEEEEcCC-------CeEEEEEEeecCC-CCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcE
Q 046902 248 V-SYANVHVDVGSLEGCLCVFRFYNL-------VYVDMWMMKEHAV-KESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVK 318 (393)
Q Consensus 248 ~-~~~~~~~~l~~~~G~L~~~~~~~~-------~~~~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~ 318 (393)
. ........+...+|+++++..... ....+..+..+.. ...|.....++.. +......+..+|.+
T Consensus 229 ~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------r~~~~~~~~~dg~i 302 (387)
T d1k3ia3 229 PDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA------RTFHTSVVLPDGST 302 (387)
T ss_dssp CCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC------CBSCEEEECTTSCE
T ss_pred cccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccc------cccceeeeccCCeE
Confidence 0 001112234446899988875421 1333333333321 1223322222211 12233444456664
Q ss_pred EEEEEcC-----------cEEEEEECCCCcEEEE
Q 046902 319 LLLEVRR-----------EKLVWFDLETNSLRTV 341 (393)
Q Consensus 319 i~l~~~~-----------~~l~~yd~~t~~~~~v 341 (393)
+++.... ..+..||+++++|+.+
T Consensus 303 ~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~ 336 (387)
T d1k3ia3 303 FITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 336 (387)
T ss_dssp EEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred EEECCcccCccCCCCcEeceEEEEECCCCeEEEC
Confidence 4443211 1367899999999988
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.99 E-value=1.8e-05 Score=71.41 Aligned_cols=199 Identities=7% Similarity=0.029 Sum_probs=109.2
Q ss_pred eccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecC-----CCCccEEEEEEeCCCCeEEccccCccc
Q 046902 116 NPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGN-----DGDDVEVEVYSLKTNSWRRISNLPRFL 190 (393)
Q Consensus 116 NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~-----~~~~~~~~Vyss~t~~W~~~~~~p~~~ 190 (393)
.|.+++|...++.| .. .. .....+..+ ||+.+...... ......+++|+..+++|+.+..++..
T Consensus 5 ~p~~g~W~~~~~~p--~~---~~---~~a~~~~~g--kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~- 73 (387)
T d1k3ia3 5 QPGLGRWGPTIDLP--IV---PA---AAAIEPTSG--RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK- 73 (387)
T ss_dssp CTTSCEEEEEEECS--SC---CS---EEEEETTTT--EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS-
T ss_pred CCCCCccCCcCCCC--cc---cc---EEEEEeeCC--EEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCC-
Confidence 58899999877666 11 11 112223222 77777654221 11334688999999999876543310
Q ss_pred ccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeec-CCCcccccCCceeEEEEEeCCeEEEEEE
Q 046902 191 RDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCVFRF 269 (393)
Q Consensus 191 ~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~l~~~~G~L~~~~~ 269 (393)
. ........+..+|.+|+.+..+ ...+..||+.+++|+.++ +|... ..+......+|+++++..
T Consensus 74 -------~-~~~~~~~~~~~~g~i~v~Gg~~--~~~~~~yd~~~~~w~~~~~~~~~r-----~~~~~~~~~dG~v~v~GG 138 (387)
T d1k3ia3 74 -------H-DMFCPGISMDGNGQIVVTGGND--AKKTSLYDSSSDSWIPGPDMQVAR-----GYQSSATMSDGRVFTIGG 138 (387)
T ss_dssp -------C-CCSSCEEEECTTSCEEEECSSS--TTCEEEEEGGGTEEEECCCCSSCC-----SSCEEEECTTSCEEEECC
T ss_pred -------c-ccceeEEEEecCCcEEEeecCC--CcceeEecCccCcccccccccccc-----cccceeeecCCceeeecc
Confidence 0 0111122345789999987652 346889999999999874 33322 122233444899999876
Q ss_pred cCCC---eEEEEEEeecCCCCCeEEEEEeeCCCCCCC------cceeeEEEE-EeCCcEEEEEEcCcEEEEEECCCCcEE
Q 046902 270 YNLV---YVDMWMMKEHAVKESWTKLFSVQEPTPTRS------FLFLRPLGY-SRNGVKLLLEVRREKLVWFDLETNSLR 339 (393)
Q Consensus 270 ~~~~---~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~------~~~~~~~~~-~~~g~~i~l~~~~~~l~~yd~~t~~~~ 339 (393)
.... .-+++..+- ....|+....+........ .....+..+ ..+|.++...........||+.+..|.
T Consensus 139 ~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~ 216 (387)
T d1k3ia3 139 SWSGGVFEKNGEVYSP--SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK 216 (387)
T ss_dssp CCCSSSCCCCEEEEET--TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred ccccccccceeeeecC--CCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEe
Confidence 4211 123444442 1467987643332111000 001122222 335543333333346888999999998
Q ss_pred EEE
Q 046902 340 TVK 342 (393)
Q Consensus 340 ~v~ 342 (393)
...
T Consensus 217 ~~~ 219 (387)
T d1k3ia3 217 SAG 219 (387)
T ss_dssp EEE
T ss_pred ecc
Confidence 774
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.06 E-value=0.78 Score=38.35 Aligned_cols=204 Identities=11% Similarity=-0.034 Sum_probs=98.7
Q ss_pred eeeeceEEEee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEe
Q 046902 97 GSCNGLIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSL 175 (393)
Q Consensus 97 ~s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss 175 (393)
...+|-|.+.+ ...+++-++|.|++....+.+. .. .+++.++. + .++... ...+..|++
T Consensus 26 d~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~-------~~--~~i~~~~d-g--~l~va~--------~~gl~~~d~ 85 (295)
T d2ghsa1 26 DPASGTAWWFNILERELHELHLASGRKTVHALPF-------MG--SALAKISD-S--KQLIAS--------DDGLFLRDT 85 (295)
T ss_dssp ETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSS-------CE--EEEEEEET-T--EEEEEE--------TTEEEEEET
T ss_pred ECCCCEEEEEECCCCEEEEEECCCCeEEEEECCC-------Cc--EEEEEecC-C--CEEEEE--------eCccEEeec
Confidence 34466666665 3467999999999877654433 11 23444432 2 223222 236889999
Q ss_pred CCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccC---CCCCcEEEEEECCCceeeeecCCCcccccCCc
Q 046902 176 KTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK---SSTRSVIVAFDLVAEEFYQLPLPDSVNVSYAN 252 (393)
Q Consensus 176 ~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~---~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~ 252 (393)
.++..+.+...+... .........+--+|.+|+-... ......+..+ .+.+...+... .. ..
T Consensus 86 ~tg~~~~l~~~~~~~--------~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~--~~g~~~~~~~~--~~--~~- 150 (295)
T d2ghsa1 86 ATGVLTLHAELESDL--------PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV--AKGKVTKLFAD--IS--IP- 150 (295)
T ss_dssp TTCCEEEEECSSTTC--------TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE--ETTEEEEEEEE--ES--SE-
T ss_pred ccceeeEEeeeecCC--------CcccceeeEECCCCCEEEEeccccccccceeEeee--cCCcEEEEeec--cC--Cc-
Confidence 999998875443111 0111111123356776554322 1112233333 34444433211 10 00
Q ss_pred eeEEEEEe-CC-eEEEEEEcCCCeEEEEEEeecCCCCCeEE--EEEeeCCCCCCCcceeeEEEEEeCCcEEEEE-EcCcE
Q 046902 253 VHVDVGSL-EG-CLCVFRFYNLVYVDMWMMKEHAVKESWTK--LFSVQEPTPTRSFLFLRPLGYSRNGVKLLLE-VRREK 327 (393)
Q Consensus 253 ~~~~l~~~-~G-~L~~~~~~~~~~~~iW~l~~~~~~~~W~~--~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~-~~~~~ 327 (393)
. .++.. ++ .|+++..... . ||+.+-+.....+.. ...+..... .....-+++..+|+ |++. ....+
T Consensus 151 -N-g~~~s~d~~~l~~~dt~~~-~--I~~~~~d~~~~~~~~~~~~~~~~~~~---~g~pdG~~vD~~Gn-lWva~~~~g~ 221 (295)
T d2ghsa1 151 -N-SICFSPDGTTGYFVDTKVN-R--LMRVPLDARTGLPTGKAEVFIDSTGI---KGGMDGSVCDAEGH-IWNARWGEGA 221 (295)
T ss_dssp -E-EEEECTTSCEEEEEETTTC-E--EEEEEBCTTTCCBSSCCEEEEECTTS---SSEEEEEEECTTSC-EEEEEETTTE
T ss_pred -c-eeeecCCCceEEEeecccc-e--eeEeeecccccccccceEEEeccCcc---cccccceEEcCCCC-EEeeeeCCCc
Confidence 1 22222 33 4555554332 3 555542211111111 111222111 11233455666776 5555 35567
Q ss_pred EEEEECCCCcEEEEEEe
Q 046902 328 LVWFDLETNSLRTVKID 344 (393)
Q Consensus 328 l~~yd~~t~~~~~v~~~ 344 (393)
|..||++++.++.|.++
T Consensus 222 V~~~dp~G~~~~~i~lP 238 (295)
T d2ghsa1 222 VDRYDTDGNHIARYEVP 238 (295)
T ss_dssp EEEECTTCCEEEEEECS
T ss_pred eEEecCCCcEeeEecCC
Confidence 99999999999999874
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.01 E-value=1.4 Score=36.73 Aligned_cols=202 Identities=12% Similarity=0.039 Sum_probs=100.6
Q ss_pred eeeceEEEe-eCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeC
Q 046902 98 SCNGLIALC-NSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLK 176 (393)
Q Consensus 98 s~~GLl~~~-~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~ 176 (393)
+-+|-+++. ..+..+.|||..+++...-.... . ......++.+.+..+ + ++.... .....+.|++..
T Consensus 67 sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~---~--~~~~v~~v~~s~d~~-~-l~~~~~-----~~~~~~~v~~~~ 134 (311)
T d1nr0a1 67 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP---V--FSGPVKDISWDSESK-R-IAAVGE-----GRERFGHVFLFD 134 (311)
T ss_dssp CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE---C--SSSCEEEEEECTTSC-E-EEEEEC-----CSSCSEEEEETT
T ss_pred eCCCCeEeccccCceEeeeeeeccccccccccc---c--ccCcccccccccccc-c-cccccc-----cccccccccccc
Confidence 446655544 35678999999887643211111 0 112234566666433 2 222221 122346778777
Q ss_pred CCCeEEccccCcccccccccccccccccCceeEe--CceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCcee
Q 046902 177 TNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA--GGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVH 254 (393)
Q Consensus 177 t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~ 254 (393)
+++-.. .+. .+. ..-.++.+ +|....++.. ....|..||+.+.+......... .. -
T Consensus 135 ~~~~~~--~l~----------~h~--~~v~~v~~~~~~~~~l~sgs--~d~~i~i~d~~~~~~~~~~~~~~-----~~-i 192 (311)
T d1nr0a1 135 TGTSNG--NLT----------GQA--RAMNSVDFKPSRPFRIISGS--DDNTVAIFEGPPFKFKSTFGEHT-----KF-V 192 (311)
T ss_dssp TCCBCB--CCC----------CCS--SCEEEEEECSSSSCEEEEEE--TTSCEEEEETTTBEEEEEECCCS-----SC-E
T ss_pred cccccc--ccc----------ccc--cccccccccccceeeecccc--ccccccccccccccccccccccc-----cc-c
Confidence 654211 111 000 11112222 3443223221 12468889998876544322111 11 1
Q ss_pred EEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCC--CcceeeEEEEEeCCcEEEEEEcCcEEEEE
Q 046902 255 VDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTR--SFLFLRPLGYSRNGVKLLLEVRREKLVWF 331 (393)
Q Consensus 255 ~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~--~~~~~~~~~~~~~g~~i~l~~~~~~l~~y 331 (393)
..+... +|.+.+....+. .+.+|-+.. +.+...+....... ......-+++.++|..|+-...++.+..|
T Consensus 193 ~~v~~~p~~~~l~~~~~d~-~v~~~d~~~------~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iw 265 (311)
T d1nr0a1 193 HSVRYNPDGSLFASTGGDG-TIVLYNGVD------GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 265 (311)
T ss_dssp EEEEECTTSSEEEEEETTS-CEEEEETTT------CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccccCccccccccccccc-ccccccccc------ccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEE
Confidence 122322 677666665544 899997664 23444444322111 11123346677888877777667789999
Q ss_pred ECCCCcEEE
Q 046902 332 DLETNSLRT 340 (393)
Q Consensus 332 d~~t~~~~~ 340 (393)
|.++++...
T Consensus 266 d~~t~~~~~ 274 (311)
T d1nr0a1 266 NVATLKVEK 274 (311)
T ss_dssp ETTTTEEEE
T ss_pred ECCCCcEEE
Confidence 999987543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.05 E-value=1.5 Score=37.33 Aligned_cols=142 Identities=13% Similarity=0.051 Sum_probs=76.5
Q ss_pred cEEEEEEeCCCCeEEccccCcccccccccccccccccCceeE--eCceEEEeccCCCCCcEEEEEECCCceeeee-cCCC
Q 046902 168 VEVEVYSLKTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVL--AGGALHWVSPKSSTRSVIVAFDLVAEEFYQL-PLPD 244 (393)
Q Consensus 168 ~~~~Vyss~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i-~lP~ 244 (393)
..+.||+..++.+..+..+. .+.. .-.++. -+|.+-..+.. ...|..+|+.+..+... .+..
T Consensus 29 ~~i~iw~~~~~~~~~~~~l~----------gH~~--~V~~l~fsp~~~~l~s~s~---D~~i~vWd~~~~~~~~~~~~~~ 93 (371)
T d1k8kc_ 29 HEVHIYEKSGNKWVQVHELK----------EHNG--QVTGVDWAPDSNRIVTCGT---DRNAYVWTLKGRTWKPTLVILR 93 (371)
T ss_dssp SEEEEEEEETTEEEEEEEEE----------CCSS--CEEEEEEETTTTEEEEEET---TSCEEEEEEETTEEEEEEECCC
T ss_pred CEEEEEECCCCCEEEEEEec----------CCCC--CEEEEEECCCCCEEEEEEC---CCeEEEEeeccccccccccccc
Confidence 46889999998887765432 1110 111121 24543222222 24688889988887654 3332
Q ss_pred cccccCCceeEEEEE-eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE
Q 046902 245 SVNVSYANVHVDVGS-LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV 323 (393)
Q Consensus 245 ~~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~ 323 (393)
.. ... ..+.- -+|...+++..+. .+.+|.++... ..|.......... ....-+.++++|..++...
T Consensus 94 ~~----~~v-~~i~~~p~~~~l~~~s~d~-~i~i~~~~~~~--~~~~~~~~~~~~~-----~~v~~v~~~p~~~~l~s~s 160 (371)
T d1k8kc_ 94 IN----RAA-RCVRWAPNEKKFAVGSGSR-VISICYFEQEN--DWWVCKHIKKPIR-----STVLSLDWHPNSVLLAAGS 160 (371)
T ss_dssp CS----SCE-EEEEECTTSSEEEEEETTS-SEEEEEEETTT--TEEEEEEECTTCC-----SCEEEEEECTTSSEEEEEE
T ss_pred cc----ccc-cccccccccccceeecccC-cceeeeeeccc--ccccccccccccc-----cccccccccccccceeccc
Confidence 21 111 12222 2666655555444 89999988632 3333333222111 1123456677887777666
Q ss_pred cCcEEEEEECCCCc
Q 046902 324 RREKLVWFDLETNS 337 (393)
Q Consensus 324 ~~~~l~~yd~~t~~ 337 (393)
.+..+..||+..+.
T Consensus 161 ~D~~v~v~~~~~~~ 174 (371)
T d1k8kc_ 161 CDFKCRIFSAYIKE 174 (371)
T ss_dssp TTSCEEEEECCCTT
T ss_pred cCcEEEEEeeccCc
Confidence 66778889887654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=92.97 E-value=2.2 Score=35.80 Aligned_cols=211 Identities=8% Similarity=-0.003 Sum_probs=102.2
Q ss_pred eeceEEEee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCC
Q 046902 99 CNGLIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKT 177 (393)
Q Consensus 99 ~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t 177 (393)
.+|-|.+.+ ...+++.+||.+++........ .....++.+++... ++.... ........+..++..+
T Consensus 49 ~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~-------~~~p~gla~~~dG~---l~va~~--~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 49 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSH-------KANPAAIKIHKDGR---LFVCYL--GDFKSTGGIFAATENG 116 (319)
T ss_dssp TTSCEEEEETTTCEEEEECTTTCCEEEEEECS-------SSSEEEEEECTTSC---EEEEEC--TTSSSCCEEEEECTTS
T ss_pred CCCCEEEEECCCCEEEEEECCCCeEEEEEeCC-------CCCeeEEEECCCCC---EEEEec--CCCccceeEEEEcCCC
Confidence 356555555 4567888999988654432211 11235677776542 222211 0001233455555555
Q ss_pred CCeEEcc-ccCcccccccccccccccccCceeEeCceEEEeccC---CCCCcEEEEEECCCceeeeecCCCcccccCCce
Q 046902 178 NSWRRIS-NLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK---SSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANV 253 (393)
Q Consensus 178 ~~W~~~~-~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~---~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~ 253 (393)
+...... .... ......-.+.-+|.+|+-... ......+..+|........+.-+ .. .
T Consensus 117 ~~~~~~~~~~~~-----------~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~--~~---~-- 178 (319)
T d2dg1a1 117 DNLQDIIEDLST-----------AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--IS---V-- 178 (319)
T ss_dssp CSCEEEECSSSS-----------CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ES---S--
T ss_pred ceeeeeccCCCc-----------ccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeec--cc---e--
Confidence 5544332 1110 111111123457887765332 11234688888776655543211 00 0
Q ss_pred eEEEEEe-CC-eEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEE-EcCcEEEE
Q 046902 254 HVDVGSL-EG-CLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLE-VRREKLVW 330 (393)
Q Consensus 254 ~~~l~~~-~G-~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~-~~~~~l~~ 330 (393)
.-.++.. +| .||++..... .+..+-++..+ ...+.....+.... .......-+++..+|+ |++. ....++..
T Consensus 179 pnGia~s~dg~~lyvad~~~~-~I~~~d~~~~g-~~~~~~~~~~~~~~--~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~ 253 (319)
T d2dg1a1 179 ANGIALSTDEKVLWVTETTAN-RLHRIALEDDG-VTIQPFGATIPYYF--TGHEGPDSCCIDSDDN-LYVAMYGQGRVLV 253 (319)
T ss_dssp EEEEEECTTSSEEEEEEGGGT-EEEEEEECTTS-SSEEEEEEEEEEEC--CSSSEEEEEEEBTTCC-EEEEEETTTEEEE
T ss_pred eeeeeeccccceEEEecccCC-ceEEEEEcCCC-ceeccccceeeecc--CCccceeeeeEcCCCC-EEEEEcCCCEEEE
Confidence 0123332 45 5777765443 55444444333 12233222222110 0111123356667887 5554 45568999
Q ss_pred EECCCCcEEEEEEe
Q 046902 331 FDLETNSLRTVKID 344 (393)
Q Consensus 331 yd~~t~~~~~v~~~ 344 (393)
||++.+.+.+|.++
T Consensus 254 ~~p~G~~l~~i~~P 267 (319)
T d2dg1a1 254 FNKRGYPIGQILIP 267 (319)
T ss_dssp ECTTSCEEEEEECT
T ss_pred ECCCCcEEEEEeCC
Confidence 99999989999874
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=2.6 Score=35.11 Aligned_cols=201 Identities=10% Similarity=0.021 Sum_probs=101.6
Q ss_pred eeeeceEEEeeCCceEEEEeccccceec-cCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEe
Q 046902 97 GSCNGLIALCNSVQELALFNPSTRKLKT-LPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSL 175 (393)
Q Consensus 97 ~s~~GLl~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss 175 (393)
-+.+|-.+....+..+.|||..+++... +.... ...+......+.+.|.. .+ ++... ....+.+|+.
T Consensus 59 fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~---~~~h~~~I~~v~~s~dg-~~-l~s~~-------~dg~i~iwd~ 126 (337)
T d1gxra_ 59 ISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLD---CLNRDNYIRSCKLLPDG-CT-LIVGG-------EASTLSIWDL 126 (337)
T ss_dssp ECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEE---CSCTTSBEEEEEECTTS-SE-EEEEE-------SSSEEEEEEC
T ss_pred ECCCCCEEEEEECCEEEEEEccCCcccceeEEee---ecCCCCcEEEEEEcCCC-CE-EEEee-------cccccccccc
Confidence 3556766555556679999977654322 11111 01112234456666643 33 33222 2347889998
Q ss_pred CCCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeE
Q 046902 176 KTNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHV 255 (393)
Q Consensus 176 ~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~ 255 (393)
...+.+....+. .+..........-+|.+...+.. ...|..+|+.+.+......... .. -.
T Consensus 127 ~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~s~~~---d~~i~~~~~~~~~~~~~~~~~~-----~~-v~ 187 (337)
T d1gxra_ 127 AAPTPRIKAELT----------SSAPACYALAISPDSKVCFSCCS---DGNIAVWDLHNQTLVRQFQGHT-----DG-AS 187 (337)
T ss_dssp CCC--EEEEEEE----------CSSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCCS-----SC-EE
T ss_pred cccccccccccc----------ccccccccccccccccccccccc---cccccccccccccccccccccc-----cc-cc
Confidence 876665443222 00000000011123444333322 3568899998876544322111 11 11
Q ss_pred EEEE-eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEcCcEEEEEECC
Q 046902 256 DVGS-LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLE 334 (393)
Q Consensus 256 ~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd~~ 334 (393)
.+.. .+|...+++..+. .+.+|-++.. ..+....... ...-+++.++++.++....++.+..||+.
T Consensus 188 ~l~~s~~~~~~~~~~~d~-~v~i~d~~~~------~~~~~~~~~~------~i~~l~~~~~~~~l~~~~~d~~i~i~d~~ 254 (337)
T d1gxra_ 188 CIDISNDGTKLWTGGLDN-TVRSWDLREG------RQLQQHDFTS------QIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp EEEECTTSSEEEEEETTS-EEEEEETTTT------EEEEEEECSS------CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cccccccccccccccccc-cccccccccc------eeeccccccc------ceEEEEEcccccccceecccccccccccc
Confidence 2322 3566655555444 8889876531 1223333321 13345667788888777777779999999
Q ss_pred CCcEEEE
Q 046902 335 TNSLRTV 341 (393)
Q Consensus 335 t~~~~~v 341 (393)
+.+....
T Consensus 255 ~~~~~~~ 261 (337)
T d1gxra_ 255 KPDKYQL 261 (337)
T ss_dssp SSCEEEE
T ss_pred ccccccc
Confidence 8876543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.04 E-value=3.3 Score=33.71 Aligned_cols=205 Identities=10% Similarity=0.057 Sum_probs=104.5
Q ss_pred eeeceEEEee-CCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeC
Q 046902 98 SCNGLIALCN-SVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLK 176 (393)
Q Consensus 98 s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~ 176 (393)
..+|-|.+.+ ...++.++||-......++... ..........++.++...+.+-++... ....+.+++..
T Consensus 31 d~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~ 101 (279)
T d1q7fa_ 31 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECG--KRDSQLLYPNRVAVVRNSGDIIVTERS-------PTHQIQIYNQY 101 (279)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBS--SSTTCBSSEEEEEEETTTTEEEEEECG-------GGCEEEEECTT
T ss_pred cCCCCEEEEECCCCEEEEEeCCCCEEEEecccC--CCcccccccccccccccccccceeccC-------Ccccccccccc
Confidence 3467777765 4567999998755444454432 111112223344555544444332211 23456667766
Q ss_pred CCCeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEE
Q 046902 177 TNSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVD 256 (393)
Q Consensus 177 t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~ 256 (393)
...++...... ......-.+.-+|.+|..... ...+..||........+..+.... . ...
T Consensus 102 g~~~~~~~~~~------------~~~p~~~avd~~G~i~v~~~~---~~~~~~~~~~g~~~~~~g~~~~~~---~--~~~ 161 (279)
T d1q7fa_ 102 GQFVRKFGATI------------LQHPRGVTVDNKGRIIVVECK---VMRVIIFDQNGNVLHKFGCSKHLE---F--PNG 161 (279)
T ss_dssp SCEEEEECTTT------------CSCEEEEEECTTSCEEEEETT---TTEEEEECTTSCEEEEEECTTTCS---S--EEE
T ss_pred ccceeecCCCc------------ccccceeccccCCcEEEEeec---cceeeEeccCCceeeccccccccc---c--cce
Confidence 55555543211 100112233456888877443 457899998776666554443321 1 123
Q ss_pred EEE-eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-c-CcEEEEEEC
Q 046902 257 VGS-LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-R-REKLVWFDL 333 (393)
Q Consensus 257 l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~-~~~l~~yd~ 333 (393)
++. .+|.++++..... . |++.+..+ .+ +.++.... ......-+++.++|+ |++.. . +..+..||+
T Consensus 162 i~~d~~g~i~v~d~~~~-~--V~~~d~~G---~~--~~~~g~~g---~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~ 229 (279)
T d1q7fa_ 162 VVVNDKQEIFISDNRAH-C--VKVFNYEG---QY--LRQIGGEG---ITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQ 229 (279)
T ss_dssp EEECSSSEEEEEEGGGT-E--EEEEETTC---CE--EEEESCTT---TSCSEEEEEECTTCC-EEEEECSSSCEEEEECT
T ss_pred eeeccceeEEeeecccc-c--eeeeecCC---ce--eeeecccc---cccCCcccccccCCe-EEEEECCCCcEEEEECC
Confidence 333 4778887765433 3 44555433 33 23343221 111223345667877 55553 2 336889998
Q ss_pred CCCcEEEEEE
Q 046902 334 ETNSLRTVKI 343 (393)
Q Consensus 334 ~t~~~~~v~~ 343 (393)
+.+-+..+..
T Consensus 230 ~G~~~~~~~~ 239 (279)
T d1q7fa_ 230 DGQLISALES 239 (279)
T ss_dssp TSCEEEEEEE
T ss_pred CCCEEEEEeC
Confidence 8776666644
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.20 E-value=6.5 Score=33.05 Aligned_cols=202 Identities=14% Similarity=0.171 Sum_probs=97.1
Q ss_pred eceEE-EeeCCceEEEEeccccceeccCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCC
Q 046902 100 NGLIA-LCNSVQELALFNPSTRKLKTLPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTN 178 (393)
Q Consensus 100 ~GLl~-~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~ 178 (393)
+|-++ ....+..+.|||..++++..+.... . +......+.+.|.. .| ++... ....+.|++..++
T Consensus 18 dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~---g--H~~~V~~l~fsp~~-~~-l~s~s-------~D~~i~vWd~~~~ 83 (371)
T d1k8kc_ 18 DRTQIAICPNNHEVHIYEKSGNKWVQVHELK---E--HNGQVTGVDWAPDS-NR-IVTCG-------TDRNAYVWTLKGR 83 (371)
T ss_dssp TSSEEEEECSSSEEEEEEEETTEEEEEEEEE---C--CSSCEEEEEEETTT-TE-EEEEE-------TTSCEEEEEEETT
T ss_pred CCCEEEEEeCCCEEEEEECCCCCEEEEEEec---C--CCCCEEEEEECCCC-CE-EEEEE-------CCCeEEEEeeccc
Confidence 45333 3334567889999888765544332 1 12234556677754 33 33322 2346889999999
Q ss_pred CeEEccccCcccccccccccccccccCceeE--eCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEE
Q 046902 179 SWRRISNLPRFLRDFYDYLYHSLFRKGYGVL--AGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVD 256 (393)
Q Consensus 179 ~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~ 256 (393)
.|........ +. ..-..+. -+|.....+.. +..-.+..++..+..+.......... ... ..
T Consensus 84 ~~~~~~~~~~----------~~--~~v~~i~~~p~~~~l~~~s~-d~~i~i~~~~~~~~~~~~~~~~~~~~---~~v-~~ 146 (371)
T d1k8kc_ 84 TWKPTLVILR----------IN--RAARCVRWAPNEKKFAVGSG-SRVISICYFEQENDWWVCKHIKKPIR---STV-LS 146 (371)
T ss_dssp EEEEEEECCC----------CS--SCEEEEEECTTSSEEEEEET-TSSEEEEEEETTTTEEEEEEECTTCC---SCE-EE
T ss_pred cccccccccc----------cc--ccccccccccccccceeecc-cCcceeeeeecccccccccccccccc---ccc-cc
Confidence 9886543320 00 0000111 13332222221 22234444554444443322111111 111 12
Q ss_pred EEEe-CCeEEEEEEcCCCeEEEEEEeecCC-----CCCeEE-------EEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE
Q 046902 257 VGSL-EGCLCVFRFYNLVYVDMWMMKEHAV-----KESWTK-------LFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV 323 (393)
Q Consensus 257 l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~-----~~~W~~-------~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~ 323 (393)
+.-. +|...+.+..+. .+.+|-+..... ...|.. ...... ......-+++.++|+.|+...
T Consensus 147 v~~~p~~~~l~s~s~D~-~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~g~~l~s~~ 220 (371)
T d1k8kc_ 147 LDWHPNSVLLAAGSCDF-KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-----SCGWVHGVCFSANGSRVAWVS 220 (371)
T ss_dssp EEECTTSSEEEEEETTS-CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-----CSSCEEEEEECSSSSEEEEEE
T ss_pred ccccccccceeccccCc-EEEEEeeccCccccccccccccccccceeeeeeccC-----ccCcEEEEEeecccccccccc
Confidence 2222 666655554444 889998753211 011211 011000 011233466778888887777
Q ss_pred cCcEEEEEECCCCcE
Q 046902 324 RREKLVWFDLETNSL 338 (393)
Q Consensus 324 ~~~~l~~yd~~t~~~ 338 (393)
.++.+..||+++++.
T Consensus 221 ~d~~i~iwd~~~~~~ 235 (371)
T d1k8kc_ 221 HDSTVCLADADKKMA 235 (371)
T ss_dssp TTTEEEEEEGGGTTE
T ss_pred cCCcceEEeeecccc
Confidence 777899999988653
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=83.31 E-value=13 Score=32.10 Aligned_cols=204 Identities=13% Similarity=-0.007 Sum_probs=103.9
Q ss_pred ceEEEee-CCceEEEEeccccceec-cCCCCCCCCCCCCceEEEEeeeCCCCCeEEEEEEEeecCCCCccEEEEEEeCCC
Q 046902 101 GLIALCN-SVQELALFNPSTRKLKT-LPLPPCLVGFPSAFTFYGFGQDKINDDYKLVRVLHFKGNDGDDVEVEVYSLKTN 178 (393)
Q Consensus 101 GLl~~~~-~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~Vyss~t~ 178 (393)
.|+.+.. .+..+.|+|+.|++... |+.-. ...++.|.|..+ |-.+. . ..-.+.+++..++
T Consensus 32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~---------~~~~v~fSpDG~-~l~~~-s-------~dg~v~~~d~~t~ 93 (432)
T d1qksa2 32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---------AVHISRLSASGR-YLFVI-G-------RDGKVNMIDLWMK 93 (432)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSS---------CEEEEEECTTSC-EEEEE-E-------TTSEEEEEETTSS
T ss_pred cEEEEEEcCCCEEEEEECCCCcEEEEEeCCC---------CeeEEEECCCCC-EEEEE-c-------CCCCEEEEEeeCC
Confidence 3543333 45689999999988654 33211 245667777543 33322 2 2246889998887
Q ss_pred CeEEccccCcccccccccccccccccCceeEeCceEEEeccCCCCCcEEEEEECCCceeeee-cCCCcc----cccCCce
Q 046902 179 SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQL-PLPDSV----NVSYANV 253 (393)
Q Consensus 179 ~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i-~lP~~~----~~~~~~~ 253 (393)
.-.....++... .+..........-+|+..+.+.. ....|..+|..+.+.... ..+... .......
T Consensus 94 ~~~~~~~i~~~~-------~~~~~~~s~~~SpDG~~l~vs~~--~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
T d1qksa2 94 EPTTVAEIKIGS-------EARSIETSKMEGWEDKYAIAGAY--WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR 164 (432)
T ss_dssp SCCEEEEEECCS-------EEEEEEECCSTTCTTTEEEEEEE--ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC
T ss_pred CceEEEEEecCC-------CCCCeEEecccCCCCCEEEEEcC--CCCeEEEEeCccccceeeeccCCccccceeccCCCc
Confidence 654333222100 00000001111125654333322 235789999988766443 221110 0000111
Q ss_pred eEEEEE-eCCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEEc-CcEEEEE
Q 046902 254 HVDVGS-LEGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REKLVWF 331 (393)
Q Consensus 254 ~~~l~~-~~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~l~~y 331 (393)
...+.. -+|...++.......+.+|-.++ ..=.++.+|.... ...-+++.++|..++.... +..+...
T Consensus 165 ~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~----~~~~~~~~i~~g~------~~~~~~~spdg~~~~va~~~~~~v~v~ 234 (432)
T d1qksa2 165 VAAILASHYRPEFIVNVKETGKILLVDYTD----LNNLKTTEISAER------FLHDGGLDGSHRYFITAANARNKLVVI 234 (432)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEETTC----SSEEEEEEEECCS------SEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred eeEEEECCCCCEEEEEEccCCeEEEEEccC----CCcceEEEEcccC------ccccceECCCCCEEEEeccccceEEEe
Confidence 112222 25666555554444666665443 1123444555422 2345778889887777654 3478889
Q ss_pred ECCCCcEEEE
Q 046902 332 DLETNSLRTV 341 (393)
Q Consensus 332 d~~t~~~~~v 341 (393)
|.++++....
T Consensus 235 d~~~~~~~~~ 244 (432)
T d1qksa2 235 DTKEGKLVAI 244 (432)
T ss_dssp ETTTTEEEEE
T ss_pred ecccceEEEE
Confidence 9998877655
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=82.97 E-value=4.8 Score=32.70 Aligned_cols=107 Identities=15% Similarity=0.061 Sum_probs=60.6
Q ss_pred CcEEEEEECCCcee-eeecCCCcccccCCceeEEEEEe-CCeEEEEEEcCCCeEEEEEEeecCCCCCeEEEEEeeCCCCC
Q 046902 224 RSVIVAFDLVAEEF-YQLPLPDSVNVSYANVHVDVGSL-EGCLCVFRFYNLVYVDMWMMKEHAVKESWTKLFSVQEPTPT 301 (393)
Q Consensus 224 ~~~il~fD~~~e~~-~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (393)
...|.++|+++.+. ..+++|.... .. ..++.. +|+..++.......+.+|-++. .+.+.++......
T Consensus 10 d~~v~v~D~~s~~~~~~i~~~~~~~---~~--~~i~~spDg~~l~v~~~~~~~v~v~D~~t------~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 10 PDKLVVIDTEKMAVDKVITIADAGP---TP--MVPMVAPGGRIAYATVNKSESLVKIDLVT------GETLGRIDLSTPE 78 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCTT---CC--CCEEECTTSSEEEEEETTTTEEEEEETTT------CCEEEEEECCBTT
T ss_pred CCEEEEEECCCCeEEEEEECCCCCC---Cc--cEEEECCCCCEEEEEECCCCeEEEEECCC------CcEEEEEecCCCc
Confidence 36899999998664 4467765432 11 123333 6765444444444888886542 3344455443211
Q ss_pred CCcceeeEEEEEeCCcEEEEEEc------------CcEEEEEECCCCcEEEE
Q 046902 302 RSFLFLRPLGYSRNGVKLLLEVR------------REKLVWFDLETNSLRTV 341 (393)
Q Consensus 302 ~~~~~~~~~~~~~~g~~i~l~~~------------~~~l~~yd~~t~~~~~v 341 (393)
........+++.++|+.++.... ...+..+|..+++....
T Consensus 79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (337)
T d1pbyb_ 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA 130 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE
T ss_pred ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEe
Confidence 11112234677778877776532 23588899999876554
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=81.89 E-value=12 Score=30.49 Aligned_cols=115 Identities=11% Similarity=0.100 Sum_probs=66.6
Q ss_pred eEeCceEEEeccCCCCCcEEEEEECCCceeeeecCCCcccccCCceeEEEE-EeCCeEEEEEEcCCCeEEEEEEeecCCC
Q 046902 208 VLAGGALHWVSPKSSTRSVIVAFDLVAEEFYQLPLPDSVNVSYANVHVDVG-SLEGCLCVFRFYNLVYVDMWMMKEHAVK 286 (393)
Q Consensus 208 v~~~G~lyw~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~l~-~~~G~L~~~~~~~~~~~~iW~l~~~~~~ 286 (393)
+.-+|.||+.... ...|..+|...+.-.....|... ..++ .-+|.|+++..... .+.+|.++.. .
T Consensus 35 v~pdG~l~vt~~~---~~~I~~i~p~g~~~~~~~~~~~~--------~gla~~~dG~l~v~~~~~~-~~~~~~~~~~--~ 100 (302)
T d2p4oa1 35 SAPDGTIFVTNHE---VGEIVSITPDGNQQIHATVEGKV--------SGLAFTSNGDLVATGWNAD-SIPVVSLVKS--D 100 (302)
T ss_dssp ECTTSCEEEEETT---TTEEEEECTTCCEEEEEECSSEE--------EEEEECTTSCEEEEEECTT-SCEEEEEECT--T
T ss_pred ECCCCCEEEEeCC---CCEEEEEeCCCCEEEEEcCCCCc--------ceEEEcCCCCeEEEecCCc-eEEEEEeccc--c
Confidence 4457888876433 46899999887655444555332 1233 34889888876655 5555555432 2
Q ss_pred CCeEEEEEeeCCCCCCCcceeeEEEEEeCCcEEEEEE-cCcEEEEEECCCCcEEEEEE
Q 046902 287 ESWTKLFSVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-RREKLVWFDLETNSLRTVKI 343 (393)
Q Consensus 287 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~~~~l~~yd~~t~~~~~v~~ 343 (393)
..-..+...... ....-+.+.++| .+++.. ....++.+|+.++....+..
T Consensus 101 ~~~~~~~~~~~~------~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~ 151 (302)
T d2p4oa1 101 GTVETLLTLPDA------IFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLE 151 (302)
T ss_dssp SCEEEEEECTTC------SCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cceeeccccCCc------cccceeEEccCC-CEEeeccccccceeeeccCCcceeEec
Confidence 222333332221 123445566676 455553 34579999999998776543
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